RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015335
(408 letters)
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 143 bits (363), Expect = 4e-42
Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 3/167 (1%)
Query: 244 KELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRV 303
+E+ S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ ++L +R V
Sbjct: 2 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 61
Query: 304 ALITNVKPGKLRDVMSEGLVLCASNED-HTNVEPLLPPEGAKIGERISFSGI-DGKPEEV 361
++ N+KP K+R V S+G++LCAS E + VEPL PP G+ GE + G G+P+E
Sbjct: 62 VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEE 121
Query: 362 LNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAGPCTS-SIPKASI 407
L PKKK EK+ + ++ +A +K FMT G + S+ +I
Sbjct: 122 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 168
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 138 bits (350), Expect = 3e-40
Identities = 74/165 (44%), Positives = 111/165 (67%), Gaps = 4/165 (2%)
Query: 246 LSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVAL 305
+ VS L++++G I + KHP ADSL VEE+DVGE R VVSGL + + + NR V L
Sbjct: 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60
Query: 306 ITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLNPK 365
+ N+KP K+R V+S+ +V+CAS+ + +E L PP G+ G+RI+F G+P++ LNPK
Sbjct: 61 LCNLKPAKMRGVLSQAMVMCASSPEK--IEILAPPNGSVPGDRITFDAFPGEPDKELNPK 118
Query: 366 KKQLEKITPNLFTDDKGVATFKGIPF-MTSAGPCTS-SIPKASIK 408
KK E+I P+L T+D+ VAT+KG+PF + G C + ++ + IK
Sbjct: 119 KKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 163
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Escherichia coli [TaxId: 562]}
Length = 111
Score = 85.7 bits (212), Expect = 4e-21
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L ++VG I + +H +AD L + ++DVG+ Q V+ L Y + ++L + V ++ N++
Sbjct: 12 LEMRVGKIVEVKRHENADKLYIVQVDVGQKT-LQTVTSLVPYYSEEELMGKTVVVLCNLQ 70
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
K+R SE ++LCA +D + L P G R+
Sbjct: 71 KAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 107
Score = 82.3 bits (203), Expect = 6e-20
Identities = 37/99 (37%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
L+++VG I + HP+AD L V ++D+G+ R +V+GL KY P++L NR V ++ N++
Sbjct: 11 LDLRVGKIIEVKDHPNADKLYVVKVDLGDEV-RTLVAGLKKYYKPEELLNRYVVVVANLE 69
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
P KLR + S+G++L A + + V L+P + K+G ++
Sbjct: 70 PKKLRGIGSQGMLLAADDGER--VALLMPDKEVKLGAKV 106
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Length = 107
Score = 78.5 bits (193), Expect = 1e-18
Identities = 26/100 (26%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVK 310
++++V + + + ++ LL + +G+ + R VV+G+AKY P++L +++ ++ N+K
Sbjct: 11 VDLRVAKVLSAERVEGSEKLLKLTLSLGDEE-RTVVAGIAKYYTPEELVGKKIVIVANLK 69
Query: 311 PGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERIS 350
P K+ + S+G++L AS+ ++ + ++P K G ++S
Sbjct: 70 PRKIFGIESQGMILAASDGEN--LSVIVPDRDVKEGAKLS 107
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
[TaxId: 274]}
Length = 109
Score = 71.6 bits (175), Expect = 4e-16
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 251 LNIQVGLIRKSWKHPSADSLLVEEI-DVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNV 309
L+++VG + ++ H A + D+G ++Q + + + P+DL R V N+
Sbjct: 10 LDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNL 69
Query: 310 KPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERI 349
++ +SE LVL +E V L P +G ++
Sbjct: 70 GAKRVAGFLSEVLVLGVPDEAG-RVVLLAPDREVPLGGKV 108
>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 118
Score = 58.4 bits (141), Expect = 2e-11
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 38 DIKTLYSDI-----LKSSGKSSNDEVMKWIEFAESFPADSKACFDVLIKLNEELATKSVL 92
D+ T + + S K + + +W +S L +LN L + +
Sbjct: 2 DLVTKFESLIISKYPVSFTKEQSAQAAQWESVLKSGQIQP-----HLDQLNLVLRDNTFI 56
Query: 93 LGNGLRTSEADVIVFSAVHSFVVGL------ANLDQGKMPHVMRWMDYIQSKEAL 141
+ + DV VF + L H++RW+DY+Q+ +
Sbjct: 57 VSTL-YPTSTDVHVFEVALPLIKDLVASSKDVKSTYTTYRHILRWIDYMQNLLEV 110
>d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen
regulation fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 151
Score = 39.1 bits (90), Expect = 2e-04
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 65 AESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGK 124
++ A + + + + L+G+ + + AD+ + N+ +
Sbjct: 74 LDTENAAAYSAGTTPMSQSRFFDYPVWLVGD--KLTIADLAFVPWNNVVDRIGINIKI-E 130
Query: 125 MPHVMRWMDYIQSKEA 140
P V +W ++ + A
Sbjct: 131 FPEVYKWTKHMMRRPA 146
>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-6 [TaxId: 123217]}
Length = 125
Score = 37.7 bits (87), Expect = 5e-04
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 51 GKSSNDEVMKWIEFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAV 110
K D + ++ + + L L + + ++ + + AD+ + V
Sbjct: 21 YKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVTERAYAAAD--HLTVADICLLGTV 78
Query: 111 HSFVVGLANLDQGKMPHVMRWMDYIQS 137
+ D PH+ W++ +++
Sbjct: 79 TALNW--LKHDLEPFPHIRAWLERVRA 103
>d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-5 [TaxId: 123217]}
Length = 129
Score = 36.5 bits (84), Expect = 0.001
Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 4/77 (5%)
Query: 65 AESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGK 124
A + L L N + AD+ + V D
Sbjct: 36 AHLDQTKKAKLAEALGWFEAMLKQYQWSAAN--HFTIADIALCVTVSQIEA--FQFDLHP 91
Query: 125 MPHVMRWMDYIQSKEAL 141
P V W+ + +
Sbjct: 92 YPRVRAWLLKCKDELEG 108
>d1aw9a1 a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays), type
III [TaxId: 4577]}
Length = 135
Score = 35.9 bits (82), Expect = 0.002
Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 29/127 (22%)
Query: 57 EVMKWIEFAES--FPADSKACFDVLIK------------------LNEELATKSVLLGNG 96
++ W+E +P S F +L++ L + L L
Sbjct: 13 KLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARN 72
Query: 97 L-----RTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEALGDLFGTISLE 151
+ AD S + PHV W + I ++ A I
Sbjct: 73 KYLAGDEFTLADANHASYLLYLSKTPKAGLVAARPHVKAWWEAIVARPAFQKTVAAI--- 129
Query: 152 KPGFEPP 158
P PP
Sbjct: 130 -PLPPPP 135
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 126
Score = 35.4 bits (81), Expect = 0.003
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 73 KACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWM 132
VL L L G + D+ A+ + + P V W+
Sbjct: 56 AKLAKVLDVYEARLKEFKYLAGETF--TLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWV 113
Query: 133 DYIQSKEA 140
I + A
Sbjct: 114 AEITKRPA 121
>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-3 [TaxId: 123217]}
Length = 123
Score = 35.1 bits (80), Expect = 0.004
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 24/101 (23%)
Query: 57 EVMKWIEFAESF--------------------PADSKACFDVLIKLNEELATKSVLLGNG 96
V + + F + K D + LN L + G
Sbjct: 8 VVNQRLYFDMGTLYQRFADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDGHKYV--AG 65
Query: 97 LRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQS 137
+ AD+ V + V ++ +A + K PHV W + +
Sbjct: 66 DSLTIADLTVLATVSTYD--VAGFELAKYPHVAAWYERTRK 104
>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas
paucimobilis [TaxId: 13689]}
Length = 121
Score = 33.4 bits (76), Expect = 0.012
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 22/102 (21%)
Query: 57 EVMKWIEFAES-------------FPADSKA-----CFDVLIKLNEELATKSVLLGNGLR 98
++ + F S ++KA + L L++ELA + GN
Sbjct: 13 RLLSRLSFLGSEFHKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAGRDHYAGNAF- 71
Query: 99 TSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
S AD+ ++ + +D P + + I + A
Sbjct: 72 -SVADIYLYVMLGWPA--YVGIDMAAYPALGAYAGKIAQRPA 110
>d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 33.4 bits (76), Expect = 0.013
Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 22/102 (21%)
Query: 57 EVMKWIEFAES-------------FPADSKA-----CFDVLIKLNEELATKSVLLGNGLR 98
+ ++W+ + + P + K L +NE L + + G R
Sbjct: 13 KTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQ--R 70
Query: 99 TSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
+ AD +F+ + L+ + H+ +M + +
Sbjct: 71 FTIADAYLFTVLRWAY--AVKLNLEGLEHIAAFMQRMAERPE 110
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I
[TaxId: 4577]}
Length = 129
Score = 32.9 bits (74), Expect = 0.021
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 100 SEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
S AD+ S PHV W + + +
Sbjct: 81 SLADLNHVSVTLCLFATPYASVLDAYPHVKAWWSGLMERPS 121
>d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis
[TaxId: 584]}
Length = 121
Score = 32.7 bits (74), Expect = 0.025
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 22/102 (21%)
Query: 57 EVMKWIEFAES-------------FPADSKA-----CFDVLIKLNEELATKSVLLGNGLR 98
++W+ F S P + +N+ L+ + + G+
Sbjct: 13 HQIEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHF- 71
Query: 99 TSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
+ AD +F+ LD + H+ ++ I +
Sbjct: 72 -TVADAYLFTLSQWAPH--VALDLTDLSHLQDYLARIAQRPN 110
>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 248
Score = 33.2 bits (76), Expect = 0.040
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 300 NRRVALITNVKPGKLRDVMSEGLVLC----ASNEDHTNVEPLL---------------PP 340
NRR + N + KLR++ E +V E++ +V P L P
Sbjct: 12 NRRKYMNPNYELKKLREIPDEDIVRLMGHREPGEEYPSVHPPLEEMEEPECPIRELVEPT 71
Query: 341 EGAKIGERISF 351
EGAK G+RI +
Sbjct: 72 EGAKAGDRIRY 82
>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 247
Score = 32.8 bits (75), Expect = 0.056
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 19/71 (26%)
Query: 300 NRRVALITNVKPGKLRDVMSEGLVLC----ASNEDHTNVEPLL---------------PP 340
NRR + KLR++ E +V A E++ +V P L P
Sbjct: 13 NRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPI 72
Query: 341 EGAKIGERISF 351
+GAK G+R+ +
Sbjct: 73 DGAKAGDRVRY 83
>d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor
1-gamma {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 144
Score = 31.8 bits (71), Expect = 0.067
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 3/116 (2%)
Query: 44 SDILKSSGKSSNDEVMKWIEFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEAD 103
SD+ + +S + A ++ L + L + AD
Sbjct: 30 SDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLATENIS--LAD 87
Query: 104 VIVFSAVHSFVVGLANLDQ-GKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPP 158
++ S + L + + P ++RW + +++ L D + PP
Sbjct: 88 LVAASIFTRYFESLFGTEWRAQHPAIVRWFNTVRASPFLKDEYKDFKFADKPLSPP 143
>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 381
Score = 31.8 bits (71), Expect = 0.16
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 1 MAANGSKNPTRKQLIVSILCKHLSLDHKDFSSNAAEKDIKTLYSDILKSSGK-----SSN 55
M GS+ T Q + K L + +++ ++L S I S+G +
Sbjct: 40 MVYMGSRGSTEDQ-----MAKVLQFNEVGAAADKIHSSFRSLSSAINASTGNYLLESVNK 94
Query: 56 DEVMKWIEFAESFPADSKACFD 77
K F E + + +
Sbjct: 95 LFGEKSASFREEYIRLCQKYYS 116
>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein
BC3205 {Bacillus cereus [TaxId: 1396]}
Length = 413
Score = 30.7 bits (69), Expect = 0.28
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 32/111 (28%)
Query: 50 SGKSSNDEVMKWI-EFAESFPA-DSKACFDVLIKLNEELATKS-VLLG---------NGL 97
SG+S ++K I A + F+ L L + + V LG +
Sbjct: 1 SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKMIGNAQYVGLGENTHGSSEIFTM 60
Query: 98 RTS----------------EADVIVFSAVHSFVVGLANLDQGKMPHVMRWM 132
+ E D ++ ++ +G ++ +
Sbjct: 61 KFRLVKYLVTEMGFTNFAMEEDWGNGLKLNEYIQT----GKGNPREFLKLL 107
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 29.5 bits (64), Expect = 0.67
Identities = 11/82 (13%), Positives = 18/82 (21%)
Query: 125 MPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTVQSTNHAEKSE 184
+ ++ I L K+ V N K ++ N E
Sbjct: 174 ACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEV 233
Query: 185 APSNLKSGDAKKGDTALQEKKK 206
S + E K
Sbjct: 234 LRKIWSSAQGIESMLKYVENKI 255
>d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles
dirus b), isozyme 1-4 [TaxId: 123217]}
Length = 127
Score = 28.4 bits (63), Expect = 0.82
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 57 EVMKWIEFAESFPADSKACFDVLIK----LNEELATKSVLLGNGLRTSEADVIVFSAVHS 112
E F + P + + LN L + + G + AD+ + + + +
Sbjct: 26 EYYYPQIFGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGD-DPTIADLSILATIAT 84
Query: 113 FVVGLANLDQGKMPHVMRWMDYIQS 137
+ V A D + +V RW + +
Sbjct: 85 YEV--AGYDLRRYENVQRWYERTSA 107
>d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 133
Score = 28.3 bits (62), Expect = 0.99
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 1/97 (1%)
Query: 44 SDILKSSGKSSNDEVMKWIEFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEAD 103
S I + + + I E + A L + L + G AD
Sbjct: 22 SGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEIYLAD 81
Query: 104 VIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEA 140
+ + +H + ++ P + + + A
Sbjct: 82 LFLAPQIH-GAINRFQINMEPYPTLAKCYESYNELPA 117
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.0 bits (64), Expect = 1.1
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 27/109 (24%)
Query: 8 NPTRKQLIVSILCKHLSLDHKDFSSNAAEKDIKTLYSDILKSSGKSSNDEVMKWIEFAES 67
+ + Q IV+ + +L K + L AE
Sbjct: 390 DRSNAQQIVAEMLSYLETADYSIREEIVLK-VAIL----------------------AEK 426
Query: 68 FPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIV-FSAVHSFVV 115
+ D D ++ L + + + +++ V +
Sbjct: 427 YAVDYTWYVDTILNL---IRIAGDYVSEEVWYRVIQIVINRDDVQGYAA 472
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 247
Score = 28.6 bits (64), Expect = 1.1
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 21/71 (29%)
Query: 300 NRRVALITNVKPGKLRDVMSEGLVLC----ASNEDHTNVEPLL---------------PP 340
NRR + + K KLR++ E L A D+ + P L
Sbjct: 16 NRRKHM--SGKLEKLREISDEDLTAVLGHRAPGSDYPSTHPPLAEMGEPACSTRENVAAT 73
Query: 341 EGAKIGERISF 351
GA G+R+ +
Sbjct: 74 PGAAAGDRVRY 84
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 28.6 bits (63), Expect = 1.2
Identities = 14/87 (16%), Positives = 30/87 (34%)
Query: 120 LDQGKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTVQSTNH 179
+ + + + + + AK +V++ + T+ N
Sbjct: 168 ISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNK 227
Query: 180 AEKSEAPSNLKSGDAKKGDTALQEKKK 206
EK S + D ++G +A EK+K
Sbjct: 228 LEKKLFYSTFATDDRREGMSAFVEKRK 254
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal
domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 161
Score = 28.2 bits (63), Expect = 1.3
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 130 RWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKK 172
+ Y + + F PGF P + G + +
Sbjct: 107 TAVKYFTILQDGINNF-------PGFAPEIQGVYFKQEGDKVV 142
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 171
Score = 27.7 bits (61), Expect = 1.7
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 122 QGKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLHGAKSAVDSNAKKTVQSTNHA 180
+ + H + ++Y + L E+ + L ++A+ K Q+
Sbjct: 55 EEEKEHAEKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALK-LQKSVNQALLDL 112
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 27.8 bits (60), Expect = 2.1
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 159 LHGAKSAVDSNAKKTVQSTNHAEKSEAPSNLKSGDAKKGDTALQEKKK 206
+ G+K + + +V + + S L++ D K A EKK
Sbjct: 219 VQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKD 266
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas
sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 27.8 bits (60), Expect = 2.4
Identities = 5/52 (9%), Positives = 13/52 (25%)
Query: 155 FEPPLHGAKSAVDSNAKKTVQSTNHAEKSEAPSNLKSGDAKKGDTALQEKKK 206
AK + + V+ E +++ T + +
Sbjct: 206 PTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHR 257
>g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 358
Score = 27.1 bits (59), Expect = 3.6
Identities = 10/82 (12%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 1 MAANGSKNPTRKQLIVSILCKHLSLDHKDFSSNAAEKDIKTLYSDILKSSGKSSND---- 56
M + G+ + T+ Q++ + L L+ + S + + L ++ +
Sbjct: 34 MLSLGAGSSTKMQIL-----EGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNA 88
Query: 57 -EVMKWIEFAESFPADSKACFD 77
++ ++F + K +
Sbjct: 89 LFTDLVVDLQDTFVSAMKTLYL 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.128 0.355
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,380,931
Number of extensions: 61430
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 37
Length of query: 408
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,213,086
Effective search space: 389400606
Effective search space used: 389400606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.2 bits)