BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015336
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S3S|G Chain G, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|H Chain H, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|I Chain I, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 127
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 75/126 (59%), Gaps = 8/126 (6%)
Query: 290 EPPKRRSAFQGVGRTLG-------GSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLA 342
+P AF G G+ LG + SPA A N A + SS L+ +A PTT++Q+RLA
Sbjct: 2 KPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLA 60
Query: 343 DGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANS 402
DG R+V +FNH H I DI FI +RP A + FP K+L D +QT+++A + N+
Sbjct: 61 DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA 120
Query: 403 VVIQKL 408
V++Q+L
Sbjct: 121 VIVQRL 126
>pdb|1I42|A Chain A, Nmr Structure Of The Ubx Domain From P47
pdb|1JRU|A Chain A, Nmr Structure Of The Ubx Domain From P47 (Energy Minimised
Average)
Length = 89
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 58/86 (67%)
Query: 323 SSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF 382
SS ++++ PTT++Q+RLADG R+V +FNH H I DI FI +RP A + F
Sbjct: 3 SSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTF 62
Query: 383 PPKQLTDLDQTVEQAGIANSVVIQKL 408
P K+L D +QT+++A + N+V++Q+L
Sbjct: 63 PNKELADENQTLKEANLLNAVIVQRL 88
>pdb|1SS6|A Chain A, Solution Structure Of Sep Domain From Human P47
Length = 102
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 222 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELI 281
++V + W++GF++D+G LR DP+NA FLE SI R E P EL +V++++
Sbjct: 10 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE-SIRRGEVPAELRRLAHGGQVNLDME 68
Query: 282 NKREEDYSEPPKRRSAFQGVGRTLG 306
+ R+ED+ +P AF G G+ LG
Sbjct: 69 DHRDEDFVKPKGAFKAFTGEGQKLG 93
>pdb|1VAZ|A Chain A, Solution Structures Of The P47 Sep Domain
Length = 88
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 222 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELI 281
++V + W+ GF++D+G LR DP+NA FLE SI R E P EL +V++++
Sbjct: 20 QDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLE-SIRRGEVPAELRRLAHGGQVNLDME 78
Query: 282 NKREEDYSEP 291
+ R+ED+ +P
Sbjct: 79 DHRDEDFVKP 88
>pdb|1V92|A Chain A, Solution Structure Of The Uba Domain From P47, A Major
Cofactor Of The Aaa Atpase P97
Length = 46
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48
AE + FV +T + +D A FFLES W+L A+++F ++
Sbjct: 2 AEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44
>pdb|4H6Q|A Chain A, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6Q|C Chain C, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6R|A Chain A, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
pdb|4H6R|C Chain C, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
Length = 312
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 172 GNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSA 216
G+ +D+++ +A + ERP + + K + R ++GE++ SA
Sbjct: 1 GHMIDQLYRKAVLTVAERPQVEQLARQKMWNLAERFVAGESIESA 45
>pdb|2DZL|A Chain A, Solution Structure Of The Uba Domain In Human Protein
Fam100b
Length = 66
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 12 LINSFVEITSSTKDEALFFLESHQWNLDAAVSTFL 46
+IN FV D+A L++ W + A+STF
Sbjct: 20 MINQFVLAAGCAADQAKQLLQAAHWQFETALSTFF 54
>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide
pdb|1WAK|A Chain A, X-Ray Structure Of Srpk1
Length = 397
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 294 RRSAFQGVGRTLGGSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNH 353
RR A + G+ P+ +A++TAP+ + +V+ P + +L++ A + H
Sbjct: 188 RRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVH 247
Query: 354 HHTIRDI 360
H DI
Sbjct: 248 KHFTEDI 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,581,019
Number of Sequences: 62578
Number of extensions: 397427
Number of successful extensions: 708
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 14
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)