BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015336
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Y175|UBAX1_ARATH UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis
thaliana GN=At4g15410 PE=2 SV=1
Length = 421
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/423 (56%), Positives = 298/423 (70%), Gaps = 26/423 (6%)
Query: 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATA---SPEASQSVA 63
E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN AAA A +
Sbjct: 4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSS 63
Query: 64 TLPAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATG 123
T+ SPS S+SP +PS + + + A Y LRSR G+ ++ + +G
Sbjct: 64 TIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAP-YGLRSRGGAGENKETENPSG 122
Query: 124 --TSR-----GGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVD 176
+SR G IRT ADLNR+P G SD D E +YYTGG+KSGM+VQDP K VD
Sbjct: 123 IRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVD 180
Query: 177 EIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPEN----VSHNITFWR 232
E+F+QARQSAV+RP + S+S +FTG ARLLSGE VSS+P + + H ITFW
Sbjct: 181 ELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWL 240
Query: 233 NGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPP 292
NGFTV+DGPLRG DP NA+F+ SI RSECP ELEPADKK VHV+L+ +R E+++EPP
Sbjct: 241 NGFTVNDGPLRGFSDPENAAFMN-SISRSECPSELEPADKKIPVHVDLV-RRGENFTEPP 298
Query: 293 KRRSAFQGVGRTLGGSDSPASAA-------LNTAPSPSSGLVVDATLPTTSVQLRLADGT 345
K ++ FQGVGRTLG S S +S+A +N AP+PS GLVVD PTTS+QLRLADGT
Sbjct: 299 KPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGT 358
Query: 346 RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVI 405
R+V+RFN+HHT+RD+ FIDASRPG ++ YQL MGFPPKQLT+LDQT+EQAGIAN+VVI
Sbjct: 359 RLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVI 418
Query: 406 QKL 408
QK
Sbjct: 419 QKF 421
>sp|Q54BQ5|NSF1C_DICDI NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c
PE=3 SV=1
Length = 415
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 218/441 (49%), Gaps = 71/441 (16%)
Query: 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAV 68
+S I +F IT ++K+E+ F+LESH W+L+ A TF T E +Q
Sbjct: 4 HSEAIATFQSITGASKEESTFYLESHDWDLEKAAQTF------TTLQEEENQR------- 50
Query: 69 NSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRP-GKKEDKKAATGTSRG 127
++ P R P PA+ R Y S+P K KKA G G
Sbjct: 51 -----NDQPQIEEDYEDEEEEDDHRDPMPAS-RPVY-----SKPVAKTVSKKAPAGGRVG 99
Query: 128 GIRTLADLNRTPPGGADSDDDDDEP----QQYYTGGEKSGMLVQD-PTKGNQ------VD 176
GIRTL+D N D D DD+ QQY+TGGEKSG++V+ P KG V+
Sbjct: 100 GIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVN 159
Query: 177 EIFNQAR--------QSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPEN--VSH 226
++F+ A+ + VE+PD S S + A VS P + V
Sbjct: 160 DVFDSAKRHGAVASNEKKVEKPD---SFDSVGYQLGATDQGNRNVSKPKEKDPNSQVVEV 216
Query: 227 NITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEP-ADKKTRVHVELINKRE 285
+TFW GFT+DDGPLR D+P N L+ I R PREL+ A + V LIN
Sbjct: 217 KVTFWNQGFTIDDGPLRKYDNPENKELLD-DIQRGIVPRELQKKATTPNGLSVTLINNHN 275
Query: 286 EDYSEPPK-RRSAFQGVGRTLGGSDSPASAALNTAPSPSSG----------------LVV 328
+DY EP K + AF G G+TLG S + + N + ++ + V
Sbjct: 276 QDYVEPAKPKYVAFSGGGQTLGSSSTSTNNNNNNNNNNNNRATTTSTTTTSTPNVSSINV 335
Query: 329 DATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT 388
D + PTT+VQ+RLA+G+R+ FNH HT++D+ +I++S GS +++ L GFP K +T
Sbjct: 336 DQSQPTTTVQIRLANGSRLSTTFNHSHTLQDVINYINSSS-GSNQSFDL-LTGFPQKPVT 393
Query: 389 D-LDQTVEQAGIANSVVIQKL 408
+ T++ AG+ N+++IQKL
Sbjct: 394 NPTSTTLKDAGLLNALLIQKL 414
>sp|Q5ZK10|NSF1C_CHICK NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1
Length = 369
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 190/411 (46%), Gaps = 65/411 (15%)
Query: 13 INSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSPS 72
+ FV +T + ++ A FFLES W+L A+++F ++ + + TLP S
Sbjct: 8 LREFVAVTGAEEERARFFLESAGWDLQIALASFYEDG--------GDEDILTLPQPTPSS 59
Query: 73 LSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRTL 132
+S + S S RD + ++ + A G+ R G + +
Sbjct: 60 VSRGTAASDHRVTS-------------FRDLVHAQEDDDEEEEGQRFYAGGSERSGQQIV 106
Query: 133 ADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDL 192
+ P ++ + + G ++ G + D T A+ S
Sbjct: 107 GPPRKKSP--------NELVEDLFKGAKEHGAVAVDRT-----------AKSSG------ 141
Query: 193 RASSSSKAFTGTARLLSGETVSSAPAPPPENVSHN--------ITFWRNGFTVDDGPLRG 244
SS K F G L G T A HN + W+ GF++D G LR
Sbjct: 142 -ESSKPKPFAGGGYRL-GATPEEESAYVAGERRHNSVQDVHVVLKLWKTGFSLDSGELRS 199
Query: 245 MDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRT 304
DP+NA FL+ I R E P EL + +V++++ + R+E+Y +P AF G G+
Sbjct: 200 YQDPSNAQFLD-DIRRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQK 258
Query: 305 LG-------GSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTI 357
LG + SPA A N A + SS + +D + P T++Q+RLADG R+V +FNH+H I
Sbjct: 259 LGSTAPQVLSTSSPAQQAENEAKA-SSAIAIDESEPVTNIQIRLADGGRLVQKFNHNHRI 317
Query: 358 RDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
RDI FI +RP A + FP K+LTD +QT+++A + N+V++Q+L
Sbjct: 318 RDIRLFIVDARPAMAATSFVLMTTFPNKELTDENQTLKEANLLNAVIVQRL 368
>sp|Q9CZ44|NSF1C_MOUSE NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1
Length = 370
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 194/422 (45%), Gaps = 73/422 (17%)
Query: 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATL 65
AE + FV +T + +D A FFLES W+L A+++F ++ + + T+
Sbjct: 2 AEERQDALREFVAVTGTEEDRARFFLESAGWDLQIALASFYEDG--------GDEDIVTI 53
Query: 66 PAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTS 125
S +T S S +PS +R S RD + ++ + A G+
Sbjct: 54 ----------SQATPSSVSRGTAPSDNRVTS---FRDLIHDQDEEEEEEEGQRFYAGGSE 100
Query: 126 RGGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQS 185
R G + + PP + + VD++F A++
Sbjct: 101 RSGQQIVG-----PP--------------------------RKKSPNELVDDLFKGAKEH 129
Query: 186 ---AVERPDLRASSSSK--AFTGTARLLSGETVSSAPAPPPENVSHN-------ITFWRN 233
AVER +SK F G L + E H+ + W+
Sbjct: 130 GAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKT 189
Query: 234 GFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPK 293
GF++D+G LR DP+NA FLE SI R E P EL +V++++ + R+ED+ +P
Sbjct: 190 GFSLDNGDLRSYQDPSNAQFLE-SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKG 248
Query: 294 RRSAFQGVGRTLG-------GSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTR 346
AF G G+ LG + SPA A N A + SS L+ +A PTT++Q+RLADG R
Sbjct: 249 AFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLADGGR 307
Query: 347 MVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQ 406
+V +FNH H I DI FI +RP A + FP K+L D +QT+++A + N+V++Q
Sbjct: 308 LVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 367
Query: 407 KL 408
+L
Sbjct: 368 RL 369
>sp|O35987|NSF1C_RAT NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1
Length = 370
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 194/422 (45%), Gaps = 73/422 (17%)
Query: 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATL 65
AE + FV +T + +D A FFLES W+L A+++F ++ + + T+
Sbjct: 2 AEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG--------GDEDIVTI 53
Query: 66 PAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTS 125
S +T S S +PS +R S RD + ++ + A G+
Sbjct: 54 ----------SQATPSSVSRGTAPSDNRVTS---FRDLIHDQDEEEEEEEGQRFYAGGSE 100
Query: 126 RGGIRTLADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQS 185
R G + + PP + + VD++F A++
Sbjct: 101 RSGQQIVG-----PP--------------------------RKKSPNELVDDLFKGAKEH 129
Query: 186 ---AVERPDLRASSSSK--AFTGTARLLSGETVSSAPAPPPENVSHN-------ITFWRN 233
AVER +SK F G L + E H+ + W+
Sbjct: 130 GAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKT 189
Query: 234 GFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPK 293
GF++D+G LR DP+NA FLE SI R E P EL +V++++ + R+ED+ +P
Sbjct: 190 GFSLDNGDLRSYQDPSNAQFLE-SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKG 248
Query: 294 RRSAFQGVGRTLG-------GSDSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTR 346
AF G G+ LG + SPA A N A + SS L+ +A PTT++Q+RLADG R
Sbjct: 249 AFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAE-PTTNIQIRLADGGR 307
Query: 347 MVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQ 406
+V +FNH H I DI FI +RP A + FP K+L D +QT+++A + N+V++Q
Sbjct: 308 LVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 367
Query: 407 KL 408
+L
Sbjct: 368 RL 369
>sp|Q0KL01|UBX2B_MOUSE UBX domain-containing protein 2B OS=Mus musculus GN=Ubxn2b PE=1
SV=2
Length = 331
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 151/272 (55%), Gaps = 17/272 (6%)
Query: 152 PQQYYTGGEK-SGMLVQDPTKGNQVDEIFNQARQ-SAVERPDLRASS---SSKAFTGTAR 206
P + Y+G K G+ + P G V+E+F +AR+ AV + SS +K+FTG
Sbjct: 61 PHRLYSGDHKYDGLHIVQPPTGKIVNELFKEAREHGAVPLNEATRSSREDKTKSFTGGGY 120
Query: 207 LLSGETVSSAPAPPPEN----VSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSE 262
L + EN V + WRNGF++DDG LR DP NA FLE S+ R E
Sbjct: 121 RLGNSFYKRSEYIYGENQLQDVQVLLKLWRNGFSLDDGELRPYSDPTNAQFLE-SVKRGE 179
Query: 263 CPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSP 322
P EL+ +V++++ + ++++Y +P R AF G G+ LG S +P + ++P
Sbjct: 180 TPLELQRLVHGAQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLG-SLTPEIVSTPSSPEE 238
Query: 323 ------SSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQ 376
++ +++D ++PTT +Q+RLADG+R+V RFN H I D+ FI SRP A
Sbjct: 239 EDKSILNAAVLIDDSMPTTKIQIRLADGSRLVQRFNSTHRILDVRDFIVRSRPEFATTDF 298
Query: 377 LQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
+ FP K+LTD T+++A I N+V++Q+L
Sbjct: 299 ILVTSFPSKELTDETVTLQEADILNTVILQQL 330
>sp|Q5RBG3|NSF1C_PONAB NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1
Length = 370
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 150/280 (53%), Gaps = 26/280 (9%)
Query: 153 QQYYTGG-EKSGMLVQDPTKGNQ----VDEIFNQARQS---AVERPDLRASSSSKA--FT 202
Q++Y GG E+SG + P + VD++F A++ AVER +SK F
Sbjct: 92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFA 151
Query: 203 GTARLLSGETVSSAPAPPPENVSHN-------ITFWRNGFTVDDGPLRGMDDPANASFLE 255
G L + E H+ + W++GF++D+G LR DP+NA FLE
Sbjct: 152 GGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE 211
Query: 256 VSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS------- 308
SI R E P EL +V++++ + R+ED+ +P AF G G+ LG +
Sbjct: 212 -SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLST 270
Query: 309 DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR 368
SPA A N A + SS +++D + PTT++Q+RLADG R+V +FNH H I DI FI +R
Sbjct: 271 SSPAQQAENEAKASSS-ILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDAR 329
Query: 369 PGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
P A + FP K+L D QT+++A + N+V++Q+L
Sbjct: 330 PAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 369
>sp|Q9UNZ2|NSF1C_HUMAN NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2
Length = 370
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 150/280 (53%), Gaps = 26/280 (9%)
Query: 153 QQYYTGG-EKSGMLVQDPTKGNQ----VDEIFNQARQS---AVERPDLRASSSSKA--FT 202
Q++Y GG E+SG + P + VD++F A++ AVER +SK F
Sbjct: 92 QRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFA 151
Query: 203 GTARLLSGETVSSAPAPPPENVSHN-------ITFWRNGFTVDDGPLRGMDDPANASFLE 255
G L + E H+ + W++GF++D+G LR DP+NA FLE
Sbjct: 152 GGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE 211
Query: 256 VSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGS------- 308
SI R E P EL +V++++ + R+ED+ +P AF G G+ LG +
Sbjct: 212 -SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLST 270
Query: 309 DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR 368
SPA A N A + SS +++D + PTT++Q+RLADG R+V +FNH H I DI FI +R
Sbjct: 271 SSPAQQAENEAKASSS-ILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDAR 329
Query: 369 PGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
P A + FP K+L D QT+++A + N+V++Q+L
Sbjct: 330 PAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 369
>sp|Q3SZC4|NSF1C_BOVIN NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1
Length = 370
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 149/280 (53%), Gaps = 26/280 (9%)
Query: 153 QQYYTGG-EKSGMLVQDPTK----GNQVDEIFNQARQS---AVERPDLRASSSSKA--FT 202
Q++Y GG E+SG + P + VD++F A++ AVER +SK F
Sbjct: 92 QRFYAGGSERSGQQIVGPPRKRSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFA 151
Query: 203 GTARLLSGETVSSAPAPPPENVSHN-------ITFWRNGFTVDDGPLRGMDDPANASFLE 255
G L + E H+ + W+ GF++D+G LR DP+NA FLE
Sbjct: 152 GGGYRLGAAPEEESAYVAGERRRHSGQDVHVVLKLWKTGFSLDNGELRSYQDPSNAQFLE 211
Query: 256 VSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLG-------GS 308
SI R E P EL +V++++ + R+ED+ +P AF G G+ LG +
Sbjct: 212 -SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQILNT 270
Query: 309 DSPASAALNTAPSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR 368
SPA A N A + SS + +D + PTT++Q+RLADG R+V +FNH H I DI FI +R
Sbjct: 271 SSPAQQAENEAKASSS-ISIDESQPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDAR 329
Query: 369 PGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
P A + FP K+L D +QT+++A + N+V++Q+L
Sbjct: 330 PAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQRL 369
>sp|P0C627|UBX2B_RAT UBX domain-containing protein 2B OS=Rattus norvegicus GN=Ubxn2b
PE=1 SV=1
Length = 331
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 150/272 (55%), Gaps = 17/272 (6%)
Query: 152 PQQYYTGG-EKSGMLVQDPTKGNQVDEIFNQARQ-SAVERPDLRASSS---SKAFTGTAR 206
P + Y+G E G+ + P G V+E+F +AR+ AV + SSS +K+FTG
Sbjct: 61 PLRLYSGDQEYGGLHIAQPPTGKIVNELFKEAREHGAVPLNEATRSSSDDKAKSFTGGGY 120
Query: 207 LLSGETVSSAPAPPPEN----VSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSE 262
L + EN V + W NGF++DDG LR DP NA FLE S+ R E
Sbjct: 121 RLGSSFYKRSEYIYGENQLQDVQILLRLWSNGFSLDDGELRPYSDPTNAQFLE-SVKRGE 179
Query: 263 CPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSP 322
P EL+ ++V +++ + ++++Y +P R AF G G+ LG S +P + ++P
Sbjct: 180 IPLELQRLVHGSQVSLDMEDHQDQEYIKPRLRFKAFSGEGQKLG-SLTPEIVSTPSSPEE 238
Query: 323 ------SSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQ 376
++ +++D ++PTT +Q+RLADG+R++ RFN H I D+ FI SRP A
Sbjct: 239 EDKSILNAAVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRDFIVQSRPEFATTDF 298
Query: 377 LQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
+ FP K+LTD T++ A I N+V++Q+L
Sbjct: 299 ILVTSFPSKELTDESVTLQDADILNTVILQQL 330
>sp|Q14CS0|UBX2B_HUMAN UBX domain-containing protein 2B OS=Homo sapiens GN=UBXN2B PE=1
SV=1
Length = 331
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 149/272 (54%), Gaps = 17/272 (6%)
Query: 152 PQQYYTG-GEKSGMLVQDPTKGNQVDEIFNQARQSAV----ERPDLRASSSSKAFTGTAR 206
PQ++Y+ E SG+ + P+ G V+E+F +AR+ E SK+FTG
Sbjct: 61 PQRFYSSEHEYSGLNIVRPSTGKIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGY 120
Query: 207 LLSGETVSSAPAPPPEN----VSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSE 262
L + EN V + W NGF++DDG LR ++P NA FLE S+ R E
Sbjct: 121 RLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLE-SVKRGE 179
Query: 263 CPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSP 322
P EL+ +V++++ + ++++Y +P R AF G G+ LG S +P + ++P
Sbjct: 180 IPLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLG-SLTPEIVSTPSSPEE 238
Query: 323 ------SSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQ 376
++ +++D ++PTT +Q+RLADG+R++ RFN H I D+ FI SRP A
Sbjct: 239 EDKSILNAVVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRNFIVQSRPEFAALDF 298
Query: 377 LQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
+ FP K+LTD T+ +A I N+V++Q+L
Sbjct: 299 ILVTSFPNKELTDESLTLLEADILNTVLLQQL 330
>sp|Q5ZLK2|UBX2B_CHICK UBX domain-containing protein 2B OS=Gallus gallus GN=UBXN2B PE=2
SV=1
Length = 365
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 153/279 (54%), Gaps = 22/279 (7%)
Query: 148 DDDEPQQYYTG-GEKSGMLV----QDPTKGNQVDEIFNQARQSAVERPDLRASSS----- 197
DD E Q++Y+G E G+ + +P+K V E+F +A++ D + +S
Sbjct: 90 DDKENQRFYSGDSEYRGLQIWGASNNPSK--IVAELFKEAKEHGAVPLDEASRTSGDFSK 147
Query: 198 SKAFTGTARLLSGETVSSAPAPPPEN--VSHNITFWRNGFTVDDGPLRGMDDPANASFLE 255
+K+F+G L + + EN V + WRNGF++DDG LR DP NA FLE
Sbjct: 148 AKSFSGGGYRLGDSSQKHSEYIYGENQDVQILLKLWRNGFSLDDGELRSYSDPINAQFLE 207
Query: 256 VSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAA 315
S+ R E P +L+ +V++++ + +E++Y +P R AF G G+ LG S +P +
Sbjct: 208 -SVKRGEIPVDLQRLVHGGQVNLDMEDHQEQEYVKPRLRFKAFSGEGQKLG-SLTPEIVS 265
Query: 316 LNTAPSPSSG------LVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRP 369
++P +++D ++P T +Q+RLADG+R++ RFN H I+DI FI SRP
Sbjct: 266 TPSSPEEEDKSILNAPVLIDDSVPATKIQIRLADGSRLIQRFNQTHRIKDIRDFIIQSRP 325
Query: 370 GSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
A + FP K+LTD T+ +A I N+V++Q+L
Sbjct: 326 AFATTDFVLVTTFPNKELTDESLTLREADILNTVILQQL 364
>sp|Q0P3R5|UBX2B_XENLA UBX domain-containing protein 2B OS=Xenopus laevis GN=ubxn2b PE=2
SV=1
Length = 350
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 138/260 (53%), Gaps = 24/260 (9%)
Query: 169 PTKGNQVDEIFNQARQ-SAVERPDLRASSSS----KAFTGTARLLSGETV-------SSA 216
P+ G V+E+F +A++ A+ D SS + + FTG L +
Sbjct: 94 PSPGKIVNELFKEAKEHGAIPIDDTSKSSGAFYRARTFTGRGYKLGDSSKREFEYMQGED 153
Query: 217 PAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRV 276
P + + + W NGF++DDG LR DP NA FLE S+ + E P EL+ +V
Sbjct: 154 PFEQGQEIQILLKLWSNGFSLDDGELRSYSDPINAEFLE-SVKKGEIPVELQRLVHGGQV 212
Query: 277 HVELINKREEDYSEPPKRRSAFQGVGRTLGGSDSPASAALNTAPSP--------SSGLVV 328
++++ + ++++Y +P + AF G G+ LG S ++T SP ++ + +
Sbjct: 213 NLDMEDHQDQEYIKPRLKFKAFSGEGKKLG---SVTPEIISTPSSPEEEHKRFLNAEVDL 269
Query: 329 DATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT 388
D +PTT +Q+RLADGTR++ RFN H I D+ +FI +R A+ FP +LT
Sbjct: 270 DEHVPTTKIQIRLADGTRLIQRFNLSHRIMDVRQFIIHARSDFAQCDFALLTTFPNVELT 329
Query: 389 DLDQTVEQAGIANSVVIQKL 408
D QT+E+A I N+V++Q+L
Sbjct: 330 DETQTLEEADILNTVILQRL 349
>sp|P0C8Q0|UBX1_EMENI UBX domain-containing protein 1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubx1
PE=3 SV=1
Length = 373
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 179/397 (45%), Gaps = 75/397 (18%)
Query: 13 INSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSPS 72
++ F +T + DEA +L ++ W+L+AAV+ F S E
Sbjct: 10 VSQFCAMTRARPDEAQEYLATNGWDLEAAVTEFFAEQDETAGSSE--------------- 54
Query: 73 LSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRTL 132
P+ PSA S S R S SR +P KK TL
Sbjct: 55 ----PTGQPSAKSSSSTPRESS------------SSRKQPPKK-------------FATL 85
Query: 133 ADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDL 192
DL SDDDDDE Q ++ GGEKSG+ VQ+P + +I +AR R L
Sbjct: 86 GDLASG--AADSSDDDDDENQDFFAGGEKSGLAVQNPDDLKK--KIIEKAR-----RTQL 136
Query: 193 RASSSSK----AFTGTARLLSGETVSS-------APAPP--PENVSHNITFWRNGFTVDD 239
AS S+ FTG AR L GE S PA P P V + FW +GF+VDD
Sbjct: 137 PASDDSEPRRNYFTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDD 196
Query: 240 GPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQ 299
G L DDP NA L SI + P + A V VE I + +E Y P + F
Sbjct: 197 GELYRSDDPQNAEILN-SIRQGRAPLSIMNAQHGQDVDVE-IKQHDEKYVRPKPKYQPFA 254
Query: 300 GVGRTLG----GSDSPASAALNTAPSPSSGLV---VDATLPTTSVQLRLADGTRMVARFN 352
G G+ LG G +PA + AP SSG VD + P ++Q+RL DGTR+ +RFN
Sbjct: 255 GKGQRLGSPTPGIRAPAPSEPAPAPQSSSGPPKPNVDESQPVVTLQIRLGDGTRLTSRFN 314
Query: 353 HHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTD 389
HTI D++ F+ A+ P S + FP K+LTD
Sbjct: 315 TTHTIGDVYDFVSAASPQSQARPWVLLTTFPSKELTD 351
>sp|Q9UT81|UBX3_SCHPO UBX domain-containing protein 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubx3 PE=1 SV=1
Length = 410
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 185/440 (42%), Gaps = 81/440 (18%)
Query: 12 LINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAATASPEASQSVATLPAVNSP 71
++ F + + FFLES WN + A + + PE +
Sbjct: 6 ILKEFCNRNNIDVSQGRFFLESTNWNYELATALLHE-----VIPPEEDHGL--------- 51
Query: 72 SLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKAATGTSRGGIRT 131
PS+ +S+ P + S S + D R R + + +GT+ T
Sbjct: 52 --------QPSSDVSKVPEVTGSSSGISGGDQQPPRPLQRQQNTQGQGMKSGTASKKFAT 103
Query: 132 LADLNRTPPGGADSDDDDDEPQQYYTGGEKSGMLVQDPT---KGNQVDEIFNQARQ---S 185
L DL +D+ +E +TGGEKSG+ V+D K V +I +ARQ S
Sbjct: 104 LRDLE-------GNDESAEEKSHLFTGGEKSGLSVEDGDPDPKKQLVRDILEKARQHTIS 156
Query: 186 AVERPDLRASSSSKAFTGTARLLSGETVSSAP-------APPPEN----------VSHNI 228
++ D SS + ++ + L E +S PP EN + +
Sbjct: 157 PLDEQDSGPSSLASSWASVGQRLGTENEASGSTTPVTQSGPPRENPPTESQPEKPLRRTL 216
Query: 229 TFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDY 288
FWRNGF+VDDGP+ DDPAN L I P L + V + ++ +EDY
Sbjct: 217 YFWRNGFSVDDGPIYTYDDPANQEMLRY-INSGRAPLHLLGVSMNQPIDVVVQHRMDEDY 275
Query: 289 SEPPKRRSAFQGVGRTLGG-----------------SDSPASAALNTAP---SPSSGLVV 328
P K F G G+ LG + + +S +N P +P + L +
Sbjct: 276 VAPFK---PFSGKGQRLGSTYMQPRMSQMPGGLYTDTSTSSSVPINVKPNSTTPHASLQI 332
Query: 329 DATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT 388
D PTT +Q+RL++G R V N HT+ DI+ + A PG N+ L ++ FP K L
Sbjct: 333 DENKPTTRIQVRLSNGGRTVLTVNLSHTLHDIYEAVRAVSPG---NFIL-SVPFPAKTLE 388
Query: 389 -DLDQTVEQAGIANSVVIQK 407
D TVE A + N+ ++QK
Sbjct: 389 DDPSVTVEAASLKNASLVQK 408
>sp|P34223|UBX1_YEAST UBX domain-containing protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SHP1 PE=1 SV=1
Length = 423
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 139/290 (47%), Gaps = 27/290 (9%)
Query: 142 GADSDDDDDEPQQYYTGGEKSGMLVQDPTKGNQV-DEIFNQAR---QSAVE---RPDLRA 194
G DDD+D+P+ + GGE SG+ V DP+ N + ++ +AR Q E R D
Sbjct: 135 GQADDDDEDQPRNTFAGGETSGLEVTDPSDPNSLLKDLLEKARRGGQMGAENGFRDDEDH 194
Query: 195 SSSSKAFTGTARLLSGETVSSAPAPP----------PENVSHNITFWRNGFTVDDGPLRG 244
+ FTG L G T+ +A PE V+ ITFW+ GF V DGPL
Sbjct: 195 EMGANRFTGRGFRL-GSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYR 253
Query: 245 MDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRT 304
DDPAN+ +L + + P +L V V + K +E Y P ++ F G G+
Sbjct: 254 YDDPANSFYLS-ELNQGRAPLKLLDVQFGQEVEVNVYKKLDESYKAPTRKLGGFSGQGQR 312
Query: 305 LG----GSDSPASAALNTAPSPSSGLVVDA--TLPTTSVQLRLADGTRMVARFNHHHTIR 358
LG G SPA N P+ + D TS+Q+R A+G R V N T++
Sbjct: 313 LGSPIPGESSPAEVPKNETPAAQEQPMPDNEPKQGDTSIQIRYANGKREVLHCNSTDTVK 372
Query: 359 DIHRFIDA-SRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQK 407
++ + + + +RN+ L FP K +++ + T++ A + NSVV+Q+
Sbjct: 373 FLYEHVTSNANTDPSRNFTLN-YAFPIKPISNDETTLKDADLLNSVVVQR 421
>sp|P68543|UBX2A_HUMAN UBX domain-containing protein 2A OS=Homo sapiens GN=UBXN2A PE=2
SV=1
Length = 259
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 205 ARLLSGETVSSAPAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECP 264
A+ +S + VS PA + V NI W+NGFTV+D R D A+ FL SI + E P
Sbjct: 44 AQKVSSKCVS--PAEQKKQVDVNIKLWKNGFTVNDD-FRSYSDGASQQFLN-SIKKGELP 99
Query: 265 RELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGVGRTLGGSD-SPASAALNTAPSPS 323
EL+ K V V++ +K+ E F G G LG + S A N
Sbjct: 100 SELQGIFDKEEVDVKVEDKKNEICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNIEVENK 159
Query: 324 SGLV---VDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARN--YQLQ 378
+ L ++ P T++Q+ LA+G R+V +FN H + I FI+ + GS R+ + L
Sbjct: 160 NNLSAVPLNNLEPITNIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQ-GSQRSPPFSL- 217
Query: 379 AMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408
A P +L D T+E+A + N+V+IQ+L
Sbjct: 218 ATALPVLRLLDETLTLEEADLQNAVIIQRL 247
>sp|Q99KJ0|UBX2A_MOUSE UBX domain-containing protein 2A OS=Mus musculus GN=Ubxn2a PE=2
SV=1
Length = 258
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 216 APAPPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTR 275
+P + V NI W+NGFTV+D R D A+ FL SI + E P EL K
Sbjct: 54 SPTEQKKQVDVNIKLWKNGFTVNDD-FRSYSDGASQQFLN-SIKKGELPSELWGIFDKEE 111
Query: 276 VHVELINKREEDYSEPPKRRSAFQGVGRTLGGSD----SPASAALNTAPSPSSGLVVDAT 331
V V++ +K+ E F G G LG + S A + S S + ++
Sbjct: 112 VDVKVEDKKNEVCMSTKPVFQPFSGQGHRLGSATPRIVSKAKSVEVDNKSTLSAVSLNNL 171
Query: 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARN--YQLQAMGFPPKQLTD 389
P T +Q+ LA+G R V RFN H + I FI+ + GS R+ + L A P + D
Sbjct: 172 EPITRIQIWLANGERTVQRFNVSHRVSHIKDFIEKYQ-GSQRSPPFAL-ATALPFLRFLD 229
Query: 390 LDQTVEQAGIANSVVIQKL 408
T+E+A + N+V+IQ+L
Sbjct: 230 ETLTLEEADLKNAVIIQRL 248
>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1
Length = 500
Score = 39.3 bits (90), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 334 TTSVQLRLADGTRMVARFN-HHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTD-LD 391
TT +Q+R DG+R+V RFN T+R I+ I G A + + + L D L+
Sbjct: 419 TTRIQIRTGDGSRLVRRFNALEDTVRTIYEVIKTEMDGFA-DSRFTLNDHQREDLIDKLN 477
Query: 392 QTVEQAGIAN-SVVIQKL 408
T+ AG+ N S++++KL
Sbjct: 478 MTIADAGLKNSSLLLEKL 495
>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1
Length = 427
Score = 38.5 bits (88), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQL-TDLDQ 392
T +Q+R+ +G R + RF+ + ++ ++ G+ + Q ++ F K L T LD
Sbjct: 353 VTRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADK--QPFSLTFQRKSLWTSLDS 410
Query: 393 TVEQAGIANSVV 404
T+++AGI N+ +
Sbjct: 411 TIKEAGIQNTAL 422
>sp|Q6GL77|UBXN1_XENTR UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2
SV=1
Length = 287
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 302 GRTLGGSDS-----PASAAL-NTAPSPSSGLVVDAT---LPTTSVQLRLADGTRMVARFN 352
R GG+ S PA A++ T PSPSS + T +Q+RL DG+ + F
Sbjct: 168 ARRFGGAGSEPISPPAEASIPATTPSPSSPVQEPPTKKEYDQCRIQVRLLDGSALSQTFR 227
Query: 353 HHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIANSVVI 405
+ + +++ + PG A FP + T D+++ +++ G+ S V+
Sbjct: 228 AREQLAAVRLYVELNWPGGAPGPFNLLTSFPRRVFTEEDMEKPLQELGLVPSAVL 282
>sp|P50636|RN19A_MOUSE E3 ubiquitin-protein ligase RNF19A OS=Mus musculus GN=Rnf19a PE=1
SV=2
Length = 840
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 61 SVATLPAVNSPSLSNSPSTSPSASLSRSPSRSRSPSPAAARDPYELRSRSRPGKKEDKKA 120
+V TLP V + L NSP SA LS++ S S P P+ A D +
Sbjct: 756 AVNTLPEVENDRLENSPHQCSSALLSKAASCSDVPQPSHAADEH---------------- 799
Query: 121 ATGTSRGGIRTLADL 135
GTSR G + + DL
Sbjct: 800 --GTSRSGGKPMVDL 812
>sp|Q499N6|UBXN1_RAT UBX domain-containing protein 1 OS=Rattus norvegicus GN=Ubxn1 PE=2
SV=2
Length = 297
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 299 QGVGRTLGGSDSPASAALNTAPSPSSGLVVDAT---LPTTSVQLRLADGTRMVARFNHHH 355
Q G T+G SP A + P PSS T +Q+RL DGT + F
Sbjct: 177 QKYGGTVGSRSSPP--ATDPGPVPSSPRQEPPTKREYDQCRIQVRLPDGTSLTQTFRARE 234
Query: 356 TIRDIHRFIDASR---PGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIANSVVI 405
+ + +++ R PG ++ GFP + + D+++ +++ G+ S V+
Sbjct: 235 QLAAVRLYVELHRGEEPGQDQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVL 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,569,113
Number of Sequences: 539616
Number of extensions: 6933984
Number of successful extensions: 35454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 492
Number of HSP's that attempted gapping in prelim test: 30716
Number of HSP's gapped (non-prelim): 3342
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)