Query 015336
Match_columns 408
No_of_seqs 319 out of 817
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:49:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ss6_A P47, NSFL1 cofactor P47 100.0 3.7E-35 1.3E-39 246.5 7.8 89 222-311 10-98 (102)
2 1s3s_G P47 protein; AAA ATPase 100.0 1.6E-30 5.3E-35 226.6 8.1 118 290-408 2-126 (127)
3 1vaz_A NSFL1 cofactor P47; bet 99.9 2.2E-28 7.6E-33 199.3 5.4 69 222-291 20-88 (88)
4 2dzk_A UBX domain-containing p 99.8 5.3E-19 1.8E-23 149.9 11.0 78 330-408 9-89 (109)
5 1wj4_A KIAA0794 protein; UBX d 99.8 1.2E-18 4.2E-23 150.9 9.7 82 325-408 34-119 (124)
6 3qx1_A FAS-associated factor 1 99.8 1.9E-18 6.5E-23 139.5 10.0 75 330-406 3-80 (84)
7 2cr5_A Reproduction 8; UBX dom 99.7 1.5E-17 5E-22 141.0 9.6 72 332-405 21-94 (109)
8 1v92_A NSFL1 cofactor P47; 3-h 99.4 1.1E-13 3.7E-18 99.4 5.8 44 6-49 2-45 (46)
9 3e21_A HFAF1, FAS-associated f 99.4 5.3E-14 1.8E-18 101.1 2.9 42 6-47 2-44 (45)
10 2dal_A Protein KIAA0794; FAS a 99.3 1.5E-12 5E-17 99.8 5.9 44 7-50 13-56 (62)
11 2dzl_A Protein FAM100B; UBA-li 99.3 1.7E-12 5.7E-17 100.7 6.1 44 6-49 12-57 (66)
12 2dam_A ETEA protein; KIAA0887, 99.3 2.5E-12 8.7E-17 99.9 5.9 45 6-50 15-60 (67)
13 3bq3_A Defective in cullin ned 98.7 9.4E-09 3.2E-13 99.7 5.4 43 7-49 13-55 (270)
14 2kzr_A Ubiquitin thioesterase 98.7 2.5E-08 8.4E-13 80.1 6.2 70 336-406 2-74 (86)
15 4gew_A 5'-tyrosyl-DNA phosphod 98.1 1.3E-06 4.6E-11 87.0 4.5 44 7-50 43-86 (362)
16 1oai_A Nuclear RNA export fact 97.8 4.1E-05 1.4E-09 57.8 5.8 43 6-48 4-46 (59)
17 2jp7_A MRNA export factor MEX6 97.6 6.6E-05 2.2E-09 56.3 5.3 42 7-48 4-45 (57)
18 1z96_A DNA-damage, UBA-domain 97.5 0.00017 5.9E-09 49.3 5.0 37 9-46 4-40 (40)
19 1wj7_A Hypothetical protein (R 97.4 0.0002 6.8E-09 59.8 6.0 43 7-49 37-79 (104)
20 2dzi_A Ubiquitin-like protein 97.2 0.0015 5E-08 50.4 8.6 68 333-404 6-74 (81)
21 1wju_A NEDD8 ultimate buster-1 97.2 0.0014 4.7E-08 54.4 8.3 69 332-404 13-86 (100)
22 3a9j_A Ubiquitin; protein comp 97.2 0.0011 3.8E-08 50.2 7.1 65 336-404 2-67 (76)
23 2l2d_A OTU domain-containing p 97.1 0.00076 2.6E-08 51.4 5.7 40 7-46 15-54 (73)
24 1ndd_A NEDD8, protein (ubiquit 97.1 0.0013 4.6E-08 49.7 7.3 65 336-404 2-67 (76)
25 3mtn_B UBA80, ubcep1, ubiquiti 97.1 0.002 6.8E-08 50.0 8.0 67 334-404 3-70 (85)
26 1wia_A Hypothetical ubiquitin- 97.0 0.0017 5.8E-08 52.2 7.6 67 332-404 5-72 (95)
27 2pjh_A Protein NPL4, nuclear p 97.0 0.00064 2.2E-08 53.9 4.4 69 335-405 5-76 (80)
28 1yx5_B Ubiquitin; proteasome, 96.9 0.0027 9.2E-08 51.3 7.8 65 336-404 2-67 (98)
29 1wh3_A 59 kDa 2'-5'-oligoadeny 96.9 0.0057 1.9E-07 47.9 9.1 68 333-404 6-74 (87)
30 3phx_B Ubiquitin-like protein 96.8 0.0041 1.4E-07 47.9 7.7 68 333-404 3-71 (79)
31 3v6c_B Ubiquitin; structural g 96.8 0.0046 1.6E-07 49.2 8.1 70 331-404 14-84 (91)
32 2bwf_A Ubiquitin-like protein 96.8 0.0034 1.2E-07 47.8 6.9 65 335-404 5-70 (77)
33 2hj8_A Interferon-induced 17 k 96.7 0.0052 1.8E-07 48.7 8.0 67 334-404 4-71 (88)
34 3dbh_I NEDD8; cell cycle, acti 96.7 0.0049 1.7E-07 48.2 7.7 68 333-404 11-79 (88)
35 1wy8_A NP95-like ring finger p 96.7 0.0092 3.1E-07 46.9 9.3 68 333-404 6-76 (89)
36 2kan_A Uncharacterized protein 96.7 0.0085 2.9E-07 48.4 9.1 70 331-404 12-82 (94)
37 2wyq_A HHR23A, UV excision rep 96.7 0.0071 2.4E-07 47.0 8.2 67 334-404 5-75 (85)
38 3k9o_B Ubiquitin, UBB+1; E2-25 96.7 0.0043 1.5E-07 49.6 7.2 65 336-404 3-68 (96)
39 2uyz_B Small ubiquitin-related 96.7 0.0049 1.7E-07 47.5 7.1 67 334-404 3-70 (79)
40 1uel_A HHR23B, UV excision rep 96.6 0.0084 2.9E-07 48.3 8.7 65 336-404 2-70 (95)
41 3n3k_B Ubiquitin; hydrolase, p 96.6 0.003 1E-07 49.0 5.8 67 334-404 3-70 (85)
42 4dwf_A HLA-B-associated transc 96.6 0.0071 2.4E-07 47.8 7.8 68 333-404 4-71 (90)
43 4hcn_B Polyubiquitin, ubiquiti 96.6 0.0054 1.8E-07 49.7 7.1 67 334-404 22-89 (98)
44 1wx8_A Riken cDNA 4931431F19; 96.5 0.0094 3.2E-07 47.8 8.3 67 333-404 16-83 (96)
45 1sif_A Ubiquitin; hydrophobic 96.5 0.0058 2E-07 48.5 6.8 66 335-404 10-76 (88)
46 4fbj_B NEDD8; effector-HOST ta 96.5 0.0064 2.2E-07 48.3 6.8 65 336-404 2-67 (88)
47 1ttn_A DC-UBP, dendritic cell- 96.5 0.0096 3.3E-07 49.0 8.1 68 333-404 22-90 (106)
48 1wx7_A Ubiquilin 3; ubiquitin- 96.5 0.017 5.7E-07 47.4 9.5 67 333-404 16-83 (106)
49 2ojr_A Ubiquitin; lanthide-bin 96.4 0.0096 3.3E-07 49.4 8.0 68 333-404 34-102 (111)
50 2faz_A Ubiquitin-like containi 96.4 0.0082 2.8E-07 46.0 6.7 67 334-404 2-71 (78)
51 1wyw_B Ubiquitin-like protein 96.4 0.0085 2.9E-07 48.5 7.0 68 333-404 20-88 (97)
52 3plu_A Ubiquitin-like modifier 96.3 0.0091 3.1E-07 48.9 7.0 70 329-402 16-85 (93)
53 1j8c_A Ubiquitin-like protein 96.3 0.028 9.5E-07 47.9 10.3 67 333-404 31-98 (125)
54 3m62_B UV excision repair prot 96.3 0.0081 2.8E-07 49.6 6.7 65 336-404 3-68 (106)
55 2kk8_A Uncharacterized protein 96.3 0.0084 2.9E-07 47.5 6.4 67 334-404 10-78 (84)
56 1v2y_A 3300001G02RIK protein; 96.3 0.0082 2.8E-07 50.1 6.5 68 334-404 7-90 (105)
57 4eew_A Large proline-rich prot 96.2 0.014 4.8E-07 45.8 7.5 68 333-404 16-83 (88)
58 1wxv_A BAG-family molecular ch 96.2 0.029 9.9E-07 44.6 9.2 67 334-404 7-79 (92)
59 3vdz_A Ubiquitin-40S ribosomal 96.2 0.011 3.9E-07 49.1 7.0 67 334-404 35-102 (111)
60 1we6_A Splicing factor, putati 96.1 0.023 7.7E-07 47.1 8.5 68 333-404 26-98 (111)
61 2klc_A Ubiquilin-1; ubiquitin- 96.0 0.018 6E-07 47.1 7.4 67 333-404 24-91 (101)
62 1we7_A SF3A1 protein; structur 96.0 0.022 7.5E-07 47.5 8.1 65 333-401 24-98 (115)
63 1v5o_A 1700011N24RIK protein; 96.0 0.019 6.4E-07 46.9 7.4 68 335-405 8-80 (102)
64 1yqb_A Ubiquilin 3; structural 96.0 0.021 7.3E-07 46.6 7.6 68 332-404 20-88 (100)
65 1wgd_A Homocysteine-responsive 95.9 0.039 1.3E-06 44.0 8.9 68 333-404 6-80 (93)
66 1uh6_A Ubiquitin-like 5; beta- 95.9 0.018 6.2E-07 47.7 6.8 70 331-404 25-95 (100)
67 2kc2_A Talin-1, F1; FERM, adhe 95.7 0.023 7.8E-07 49.1 7.1 72 335-407 12-120 (128)
68 1wji_A Tudor domain containing 95.7 0.022 7.4E-07 43.3 6.1 41 9-50 9-49 (63)
69 1v86_A DNA segment, CHR 7, way 95.7 0.031 1.1E-06 45.1 7.3 67 332-404 15-82 (95)
70 1jkg_B TAP; NTF2-like domain, 95.6 0.0019 6.5E-08 61.6 0.0 42 8-49 197-238 (250)
71 2kdi_A Ubiquitin, vacuolar pro 95.6 0.026 8.9E-07 47.2 7.0 68 333-404 8-76 (114)
72 2kdb_A Homocysteine-responsive 95.6 0.041 1.4E-06 45.1 7.8 70 332-405 21-96 (99)
73 2kd0_A LRR repeats and ubiquit 95.5 0.036 1.2E-06 43.7 7.2 69 331-404 9-78 (85)
74 4a20_A Ubiquitin-like protein 95.5 0.042 1.5E-06 45.0 7.6 70 332-405 17-91 (98)
75 2l7r_A Ubiquitin-like protein 95.5 0.03 1E-06 44.9 6.6 64 335-404 20-84 (93)
76 1ify_A HHR23A, UV excision rep 95.5 0.025 8.6E-07 40.7 5.4 41 7-48 6-46 (49)
77 1wgg_A Ubiquitin carboxyl-term 95.4 0.038 1.3E-06 44.7 7.1 67 333-405 6-74 (96)
78 1veg_A NEDD8 ultimate buster-1 95.4 0.023 7.8E-07 45.6 5.5 42 9-51 29-70 (83)
79 1wgh_A Ubiquitin-like 3, HCG-1 95.4 0.11 3.7E-06 44.0 10.0 65 332-400 14-86 (116)
80 3b08_A Polyubiquitin-C, ubiqui 95.4 0.035 1.2E-06 47.4 7.1 62 336-401 2-63 (152)
81 1x1m_A Ubiquitin-like protein 95.4 0.057 2E-06 44.4 8.1 67 334-404 12-94 (107)
82 3u30_A Ubiquitin, linear DI-ub 95.3 0.038 1.3E-06 48.9 7.3 70 331-404 17-87 (172)
83 3b1l_X E3 ubiquitin-protein li 94.3 0.0029 1E-07 48.2 0.0 62 336-401 2-63 (76)
84 1vg5_A RSGI RUH-014, rhomboid 95.3 0.023 7.8E-07 44.5 5.1 42 7-49 27-68 (73)
85 1se9_A Ubiquitin family; ubiqu 95.3 0.096 3.3E-06 45.1 9.5 65 333-401 15-87 (126)
86 2dkl_A Trinucleotide repeat co 95.2 0.043 1.5E-06 44.1 6.6 42 9-51 21-62 (85)
87 2lxa_A Ubiquitin-like protein 95.2 0.04 1.4E-06 44.1 6.4 66 336-406 3-74 (87)
88 2gow_A HCG-1 protein, ubiquiti 95.1 0.076 2.6E-06 45.5 8.2 63 334-400 17-87 (125)
89 2knz_A Ubiquilin-4; cytoplasm, 95.1 0.042 1.4E-06 40.1 5.7 42 6-48 8-50 (53)
90 2g3q_A Protein YBL047C; endocy 95.0 0.037 1.3E-06 38.4 5.0 38 9-47 4-41 (43)
91 3b08_A Polyubiquitin-C, ubiqui 95.0 0.055 1.9E-06 46.1 7.2 67 334-404 76-143 (152)
92 3l0w_B Monoubiquitinated proli 94.8 0.081 2.8E-06 47.2 8.0 65 336-404 2-67 (169)
93 3rt3_B Ubiquitin-like protein 94.8 0.08 2.7E-06 46.0 7.8 67 335-404 3-71 (159)
94 3q3f_A Ribonuclease/ubiquitin 94.8 0.054 1.8E-06 49.6 6.9 67 334-404 105-172 (189)
95 1v5t_A 8430435I17RIK protein; 94.8 0.12 3.9E-06 41.1 8.1 70 333-405 6-78 (90)
96 3m63_B Ubiquitin domain-contai 94.8 0.026 9E-07 46.1 4.3 66 334-404 28-94 (101)
97 2dak_A Ubiquitin carboxyl-term 94.6 0.038 1.3E-06 41.7 4.6 43 8-51 8-50 (63)
98 3rt3_B Ubiquitin-like protein 94.6 0.09 3.1E-06 45.6 7.7 68 333-404 80-148 (159)
99 1wjn_A Tubulin-folding protein 94.5 0.16 5.3E-06 40.9 8.3 72 333-405 8-88 (97)
100 1wf9_A NPL4 family protein; be 94.5 0.098 3.4E-06 43.1 7.2 67 335-405 8-90 (107)
101 2jy5_A Ubiquilin-1; UBA, alter 94.5 0.066 2.3E-06 38.9 5.4 41 7-48 10-51 (52)
102 2dzj_A Synaptic glycoprotein S 94.4 0.13 4.3E-06 41.1 7.4 71 335-407 11-86 (88)
103 2dah_A Ubiquilin-3; UBA domain 94.4 0.072 2.4E-06 39.2 5.4 42 8-50 8-50 (54)
104 1wiv_A UBP14, ubiquitin-specif 94.1 0.094 3.2E-06 40.8 5.9 43 8-51 28-70 (73)
105 2cp9_A EF-TS, EF-TSMT, elongat 93.9 0.051 1.7E-06 41.5 4.0 40 9-48 9-48 (64)
106 1dv0_A DNA repair protein HHR2 93.8 0.019 6.6E-07 41.0 1.4 41 9-50 4-44 (47)
107 1oqy_A HHR23A, UV excision rep 93.8 0.12 3.9E-06 52.1 7.4 67 334-404 7-77 (368)
108 2daf_A FLJ35834 protein; hypot 93.8 0.27 9.3E-06 41.8 8.6 70 331-404 12-82 (118)
109 1vej_A Riken cDNA 4931431F19; 93.6 0.13 4.5E-06 40.3 5.8 42 8-50 28-70 (74)
110 2kjr_A CG11242; UBL, ubiquitin 93.5 0.31 1.1E-05 39.4 8.3 73 331-404 12-90 (95)
111 3u30_A Ubiquitin, linear DI-ub 93.5 0.16 5.5E-06 44.8 7.0 68 333-404 95-163 (172)
112 2dai_A Ubadc1, ubiquitin assoc 93.3 0.18 6.2E-06 40.2 6.4 43 9-52 29-71 (83)
113 3ai5_A Yeast enhanced green fl 93.0 0.21 7.3E-06 49.0 7.7 69 332-404 231-300 (307)
114 3u5e_m 60S ribosomal protein L 92.8 0.019 6.6E-07 48.8 0.0 65 336-404 2-67 (128)
115 2io0_B Small ubiquitin-related 92.1 0.66 2.3E-05 37.3 8.3 64 334-401 5-68 (91)
116 1wz0_A Ubiquitin-like protein 92.0 0.78 2.7E-05 37.8 8.8 65 333-401 23-87 (104)
117 3u5c_f 40S ribosomal protein S 92.0 0.028 9.7E-07 49.7 0.0 65 336-404 2-67 (152)
118 2cpw_A CBL-interacting protein 92.0 0.22 7.4E-06 37.7 4.9 41 10-51 20-61 (64)
119 1wm3_A Ubiquitin-like protein 91.9 0.63 2.1E-05 35.4 7.6 64 335-402 2-65 (72)
120 1whc_A RSGI RUH-027, UBA/UBX 3 91.8 0.13 4.5E-06 38.9 3.6 42 9-51 9-51 (64)
121 1vek_A UBP14, ubiquitin-specif 91.7 0.33 1.1E-05 38.8 6.0 44 7-51 27-71 (84)
122 2dzm_A FAS-associated factor 1 91.6 0.75 2.6E-05 37.7 8.2 67 335-405 10-77 (100)
123 2dag_A Ubiquitin carboxyl-term 91.4 0.33 1.1E-05 37.8 5.5 43 8-51 8-51 (74)
124 1wr1_B Ubiquitin-like protein 91.3 0.37 1.3E-05 35.9 5.5 40 8-48 16-56 (58)
125 2io1_B Small ubiquitin-related 91.2 0.48 1.6E-05 38.2 6.6 64 334-401 7-70 (94)
126 2bwb_A Ubiquitin-like protein 91.1 0.36 1.2E-05 34.1 5.1 39 8-47 6-45 (46)
127 2al3_A TUG long isoform; TUG U 90.8 0.52 1.8E-05 38.2 6.3 65 336-404 11-76 (90)
128 2d07_B Ubiquitin-like protein 90.6 0.76 2.6E-05 36.9 7.2 65 333-401 16-80 (93)
129 3a4r_A Nfatc2-interacting prot 90.6 1.3 4.3E-05 34.4 8.3 64 334-401 7-71 (79)
130 2k8h_A Small ubiquitin protein 90.2 1.2 4.2E-05 37.1 8.4 65 333-401 25-89 (110)
131 2fnj_B Transcription elongatio 89.7 0.49 1.7E-05 40.2 5.5 60 337-400 3-63 (118)
132 2ekk_A UBA domain from E3 ubiq 89.0 0.73 2.5E-05 32.4 5.2 39 8-48 8-46 (47)
133 2daj_A KIAA0977 protein, COBL- 88.4 1.9 6.4E-05 34.8 7.7 68 333-401 9-76 (91)
134 1wgl_A TOLL-interacting protei 88.1 0.73 2.5E-05 34.4 4.9 41 10-50 10-51 (59)
135 1v6e_A Cytoskeleton-associated 87.7 1.8 6.2E-05 34.4 7.5 69 335-404 8-82 (95)
136 1tr8_A Conserved protein (MTH1 87.5 0.75 2.6E-05 38.0 5.1 35 10-44 66-100 (102)
137 2eke_C Ubiquitin-like protein 87.3 2.5 8.5E-05 35.0 8.2 64 333-401 30-93 (106)
138 2kj6_A Tubulin folding cofacto 86.8 2.4 8.3E-05 34.3 7.8 73 331-404 11-90 (97)
139 2cwb_A Chimera of immunoglobul 86.4 0.83 2.8E-05 38.2 4.8 40 9-48 66-105 (108)
140 1vdl_A Ubiquitin carboxyl-term 86.4 2.2 7.5E-05 33.4 6.8 40 9-48 24-64 (80)
141 3kyd_D Small ubiquitin-related 85.6 2.5 8.5E-05 35.6 7.4 66 332-401 38-103 (115)
142 1otr_A Protein CUE2; protein-p 85.3 1.5 5.1E-05 31.6 5.0 40 9-48 4-44 (49)
143 2lbc_A Ubiquitin carboxyl-term 83.2 1.8 6.1E-05 36.5 5.6 42 8-50 77-118 (126)
144 2crn_A Ubash3A protein; compac 82.7 1.9 6.4E-05 32.5 4.9 42 10-52 10-52 (64)
145 1t0y_A Tubulin folding cofacto 81.9 4.3 0.00015 33.9 7.4 70 334-404 6-81 (122)
146 2dna_A Unnamed protein product 81.7 3 0.0001 31.9 5.8 43 9-51 19-61 (67)
147 3shq_A UBLCP1; phosphatase, hy 81.7 2.5 8.5E-05 41.4 6.7 70 333-405 4-75 (320)
148 1wgn_A UBAP1, ubiquitin associ 81.2 2.7 9.1E-05 31.8 5.1 41 9-50 19-59 (63)
149 2ooa_A E3 ubiquitin-protein li 80.2 4 0.00014 29.7 5.6 37 10-47 12-48 (52)
150 2cp8_A NEXT to BRCA1 gene 1 pr 80.2 3.5 0.00012 30.3 5.4 42 8-49 8-49 (54)
151 2jxx_A Nfatc2-interacting prot 79.0 12 0.00039 30.5 8.8 68 331-402 22-90 (97)
152 2d9s_A CBL E3 ubiquitin protei 78.9 4.9 0.00017 29.4 5.7 37 11-48 11-47 (53)
153 4ajy_B Transcription elongatio 77.0 3.4 0.00012 35.0 5.2 59 339-401 5-64 (118)
154 2dhy_A CUE domain-containing p 75.7 4.6 0.00016 30.8 5.2 42 8-49 17-59 (67)
155 4b6w_A Tubulin-specific chaper 75.7 5 0.00017 31.6 5.6 68 335-404 3-78 (86)
156 2xzm_9 RPS31E; ribosome, trans 75.3 0.58 2E-05 42.8 0.0 56 336-395 2-57 (189)
157 4dbg_A Ranbp-type and C3HC4-ty 73.9 6.8 0.00023 32.4 6.2 63 334-400 22-88 (105)
158 3tix_A Ubiquitin-like protein 73.8 7.5 0.00026 35.8 7.0 65 332-401 55-119 (207)
159 3pge_A SUMO-modified prolifera 73.5 8.4 0.00029 35.4 7.3 65 332-401 27-91 (200)
160 2lva_A Ubiquitin carboxyl-term 75.0 0.74 2.5E-05 39.3 0.0 42 8-49 17-59 (129)
161 1aip_C EF-TS, elongation facto 68.4 6.6 0.00022 36.1 5.3 40 10-49 4-43 (196)
162 3jyu_A Ubiquitin carboxyl-term 68.2 22 0.00076 32.8 9.1 58 347-405 154-216 (231)
163 2qho_B E3 ubiquitin-protein li 65.7 16 0.00054 26.3 5.7 46 4-49 4-50 (53)
164 1xb2_B EF-TS, elongation facto 65.4 6.8 0.00023 38.0 5.1 38 10-47 5-42 (291)
165 4ae4_A Ubiquitin-associated pr 61.6 13 0.00043 31.3 5.5 37 11-48 78-114 (118)
166 4a3p_A Ubiquitin carboxyl-term 61.5 16 0.00054 33.5 6.6 59 346-405 141-204 (217)
167 2di0_A Activating signal coint 55.3 35 0.0012 26.3 6.5 44 5-48 9-53 (71)
168 3ivf_A Talin-1; FERM domain, c 54.1 28 0.00096 33.9 7.4 68 331-399 82-156 (371)
169 3ivf_A Talin-1; FERM domain, c 49.7 27 0.00091 34.1 6.4 69 334-404 3-79 (371)
170 2bps_A YUKD protein; ubiquitin 46.5 56 0.0019 25.6 6.6 69 336-406 6-79 (81)
171 1wgr_A Growth factor receptor- 45.8 37 0.0013 27.7 5.6 61 335-396 10-75 (100)
172 3qij_A Protein 4.1; cytoskelet 43.2 26 0.00088 33.3 5.0 63 334-397 17-82 (296)
173 1aua_A Phosphatidylinositol tr 39.2 35 0.0012 31.9 5.2 41 6-46 27-74 (296)
174 1oqy_A HHR23A, UV excision rep 37.2 16 0.00055 36.4 2.6 42 8-50 167-208 (368)
175 3q8g_A CRAL-TRIO domain-contai 35.1 52 0.0018 31.6 5.8 41 6-46 36-83 (320)
176 2juj_A E3 ubiquitin-protein li 34.2 69 0.0024 23.5 4.8 38 10-48 8-45 (56)
177 4dxa_B KREV interaction trappe 34.1 30 0.001 33.1 4.0 52 331-384 2-55 (322)
178 3pvl_A Myosin VIIA isoform 1; 32.1 76 0.0026 33.9 6.9 45 334-378 263-308 (655)
179 1p3q_Q VPS9P, vacuolar protein 29.1 32 0.0011 25.1 2.3 39 8-46 11-50 (54)
180 1nri_A Hypothetical protein HI 29.0 26 0.0009 33.4 2.5 36 12-47 247-282 (306)
181 1r5l_A Alpha-TTP, protein (alp 27.5 40 0.0014 30.6 3.4 39 8-46 7-55 (262)
182 3au4_A Myosin-X; protein-prote 27.3 73 0.0025 32.8 5.7 45 334-378 216-262 (555)
183 2oo9_A E3 ubiquitin-protein li 27.1 1.5E+02 0.005 20.9 5.4 37 10-47 5-41 (46)
184 1h4r_A Merlin; FERM, neurofibr 27.1 66 0.0022 30.4 4.9 63 333-398 21-86 (314)
185 4ae4_A Ubiquitin-associated pr 25.0 1.2E+02 0.0042 25.2 5.6 41 8-49 7-47 (118)
186 1ef1_A Moesin; membrane, FERM 24.6 73 0.0025 29.6 4.7 63 335-399 2-67 (294)
187 4atu_I Neuronal migration prot 23.7 40 0.0014 33.7 2.7 44 222-271 62-118 (373)
188 2lbc_A Ubiquitin carboxyl-term 23.6 77 0.0026 26.2 4.2 41 10-51 4-45 (126)
189 1ufz_A Hypothetical protein BA 22.9 1.4E+02 0.0048 23.6 5.2 38 13-50 38-77 (83)
190 2j9u_A VPS28, vacuolar protein 21.0 48 0.0016 27.0 2.2 23 22-48 72-94 (96)
191 1olm_A SEC14-like protein 2; l 20.6 1.3E+02 0.0043 29.4 5.7 42 6-47 9-58 (403)
192 2j9w_A VPS28, VPS28-PROV prote 20.6 49 0.0017 27.2 2.2 23 22-48 77-99 (102)
No 1
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=100.00 E-value=3.7e-35 Score=246.46 Aligned_cols=89 Identities=37% Similarity=0.732 Sum_probs=86.1
Q ss_pred CCceEEEEEecCceeecCCCCCCCCChhhHHHHHHhhhcCCCCCccCCCCCCCcEEEEEeccccccccCCCCCCccccCc
Q 015336 222 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEPPKRRSAFQGV 301 (408)
Q Consensus 222 ~~~~~~it~w~nGF~VdDGplr~ydDP~N~~fL~~~I~~G~~P~EL~~~~~~~~V~v~v~D~~~E~Y~~p~~~~~~F~G~ 301 (408)
+++.|+||||+|||+|||||||+|+||+|++||+ +|++|+||.||+++++++.|+|+|+||++|+|++|++++++|+|+
T Consensus 10 ~~~~~~ltlw~nGFtVdDGplR~ydDP~N~~FL~-~I~~G~~P~EL~~~~~~~~V~v~v~d~~~e~y~~p~~~~~~F~G~ 88 (102)
T 1ss6_A 10 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE-SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGE 88 (102)
T ss_dssp SCEEEEEEEESSEEEETTSCEEETTCTTTHHHHH-HHHHTCCCHHHHTTSCSSCEEEEEEEEETTCCCSSSSSSTTSCSS
T ss_pred CCceEEEEEecCceEecCCCcccCCCHhHHHHHH-HHHhCCCCHHHhcccCCCeEEEEeeeccCccccCCCCcccCCccc
Confidence 6789999999999999999999999999999999 999999999999999999999999999999999998889999999
Q ss_pred ccccCCCCCC
Q 015336 302 GRTLGGSDSP 311 (408)
Q Consensus 302 G~rLGs~~p~ 311 (408)
||+||+++|.
T Consensus 89 G~~LGs~~p~ 98 (102)
T 1ss6_A 89 GQKLGSTAPQ 98 (102)
T ss_dssp SSSGGGCCSS
T ss_pred CeECCCCCCC
Confidence 9999998874
No 2
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.96 E-value=1.6e-30 Score=226.62 Aligned_cols=118 Identities=39% Similarity=0.664 Sum_probs=93.4
Q ss_pred CCCCCCccccCcccccCCCCCCCcccCCCC------CCCCCCcccCCCCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHH
Q 015336 290 EPPKRRSAFQGVGRTLGGSDSPASAALNTA------PSPSSGLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRF 363 (408)
Q Consensus 290 ~p~~~~~~F~G~G~rLGs~~p~~~~~~~~~------~~~~~~~~vd~s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~f 363 (408)
+||+++++|+|+||||||++|.....+... +.+...+.+|+++++|+|||||+||+|++.|||.+|||+|||+|
T Consensus 2 ~p~~~~~~F~G~G~~Lgs~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~f 81 (127)
T 1s3s_G 2 KPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLF 81 (127)
T ss_dssp --------CCSCCCCCCSSCCCCCCCSCTTHHHHHHHHHHHHSCCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHH
T ss_pred CCCCCCCCceecCeECCCCCCCCCCCCCCccccccccccCCCccccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHH
Confidence 567778999999999999987432111000 00112477999999999999999999999999999999999999
Q ss_pred HHHhCCCC-CCCeEEEecCCCCccCCCccCchhhcCCCCeeEEeeC
Q 015336 364 IDASRPGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQKL 408 (408)
Q Consensus 364 v~~~~~~~-~~~f~L~tt~FP~k~l~D~s~TL~eagL~navvvqk~ 408 (408)
|.+++++. ..+|.|+ ++||+|.|+|.++||+||||+|++|||||
T Consensus 82 V~~~~~~~~~~~f~L~-t~fPrk~l~d~~~TL~eagL~psavl~k~ 126 (127)
T 1s3s_G 82 IVDARPAMAATSFVLM-TTFPNKELADENQTLKEANLLNAVIVQRL 126 (127)
T ss_dssp HHHHCSGGGTSCEEEE-ETTTTEECCSTTCBHHHHTCSSCEEEEEE
T ss_pred HHHhCcCCCCCCeEEe-cCCCCCCCCCCCCcHHHCCCcCceEEEEe
Confidence 99987754 6899999 79999999999999999999999999998
No 3
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1
Probab=99.94 E-value=2.2e-28 Score=199.33 Aligned_cols=69 Identities=39% Similarity=0.799 Sum_probs=66.8
Q ss_pred CCceEEEEEecCceeecCCCCCCCCChhhHHHHHHhhhcCCCCCccCCCCCCCcEEEEEeccccccccCC
Q 015336 222 ENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEVSIMRSECPRELEPADKKTRVHVELINKREEDYSEP 291 (408)
Q Consensus 222 ~~~~~~it~w~nGF~VdDGplr~ydDP~N~~fL~~~I~~G~~P~EL~~~~~~~~V~v~v~D~~~E~Y~~p 291 (408)
+++.++||||+|||+|||||||+|+||+|++||+ +|++|+||.||++++++++|+|+|+||++|+|++|
T Consensus 20 ~~v~~~LtlW~nGFtVdDGpLR~ydDP~N~~FL~-~I~~G~~P~EL~~~~~~~~V~v~l~d~r~E~Y~~P 88 (88)
T 1vaz_A 20 QDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLE-SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKP 88 (88)
T ss_dssp SCCEEEEEEETTEEECTTSCEEETTSSTHHHHHH-HHHHTCCSSHHHHTTSSSCCEEEEEECTTTSSCCC
T ss_pred CCceEEEEEecCceEecCCCCcCCCCHhHHHHHH-HHHcCCCCHHHHcccCCCceEEEeEECCCCccCCc
Confidence 5689999999999999999999999999999999 99999999999999999999999999999999875
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.78 E-value=5.3e-19 Score=149.93 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=69.2
Q ss_pred CCCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCC--CccCchhhcCCCC-eeEEe
Q 015336 330 ATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIAN-SVVIQ 406 (408)
Q Consensus 330 ~s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~--D~s~TL~eagL~n-avvvq 406 (408)
...++|+|||||+||+|++.||+.+|||++||+||.++......+|.|+ ++||+|.|+ |.++||+||||+| ++|++
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~-t~fPrk~l~~~d~~~TL~elgL~psa~L~v 87 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLA-TMFPRREFTREDYKRRLLDLELAPSASVVL 87 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEE-CSSSCCBCCTTTTTSBTGGGTCSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEE-cCCCCcCCcccccCCCHHHCCCCCceEEEE
Confidence 4567899999999999999999999999999999998843336899999 799999998 7899999999998 67777
Q ss_pred eC
Q 015336 407 KL 408 (408)
Q Consensus 407 k~ 408 (408)
+|
T Consensus 88 ~~ 89 (109)
T 2dzk_A 88 LP 89 (109)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 5
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.76 E-value=1.2e-18 Score=150.95 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=72.7
Q ss_pred CcccCCCCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccC--CCccCchhhcCCCC-
Q 015336 325 GLVVDATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQL--TDLDQTVEQAGIAN- 401 (408)
Q Consensus 325 ~~~vd~s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l--~D~s~TL~eagL~n- 401 (408)
.+.+|+..++|+|||||+||+|+++||+.+|||++||+||... .....+|.|+ ++||+|.| +|.++||+||||++
T Consensus 34 ~~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~-t~fPrk~l~~~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 34 VEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELL-TNFPRRKLSHLDYDITLQEAGLCPQ 111 (124)
T ss_dssp CCCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEE-CSSSCCEETSSCSSSCTTTTTCCSS
T ss_pred ccccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEe-cCCCCcCCccCCCCCCHHHCCCCCc
Confidence 4678999999999999999999999999999999999999886 2236899999 79999999 58899999999998
Q ss_pred -eeEEeeC
Q 015336 402 -SVVIQKL 408 (408)
Q Consensus 402 -avvvqk~ 408 (408)
++|||++
T Consensus 112 a~Liv~~~ 119 (124)
T 1wj4_A 112 ETVFVQES 119 (124)
T ss_dssp BCCEEEEC
T ss_pred eEEEEEEc
Confidence 5567653
No 6
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.76 E-value=1.9e-18 Score=139.51 Aligned_cols=75 Identities=16% Similarity=0.323 Sum_probs=66.3
Q ss_pred CCCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCC--CccCchhhcCCCC-eeEEe
Q 015336 330 ATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIAN-SVVIQ 406 (408)
Q Consensus 330 ~s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~--D~s~TL~eagL~n-avvvq 406 (408)
+++|+|+|||||+||+|++.||+.+|||++||+||.... ....+|.|+ ++||+|.|+ |.++||+||||++ ++|++
T Consensus 3 ~~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~-~~~~~f~L~-t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 3 HMEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG-FPWDEYKLL-STFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp -CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTT-CCTTTEEEE-CSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcC-CCCCCeEEE-eCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 368999999999999999999999999999999999853 337899999 799999997 8899999999997 55543
No 7
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.72 E-value=1.5e-17 Score=140.95 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=64.5
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCC-CccCchhhcCCCC-eeEE
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT-DLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~-D~s~TL~eagL~n-avvv 405 (408)
.++|+|||||+||+|+++||+.+|||++||+||.+.. .....|.|+ ++||+|.|. |.++||+||||+| ++|+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~~~~~f~L~-t~fPrk~l~~d~~~TL~e~gL~p~a~L~ 94 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLS-TSFPRRALEVEGGSSLEDIGITVDTVLN 94 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEE-CSSSCCBCCCCSSCBHHHHTCSSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-CCCCCeEEE-eCCCCcCCCCCCCCCHHHcCCCCCeEEE
Confidence 6799999999999999999999999999999999762 336899999 799999998 7899999999998 4443
No 8
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.44 E-value=1.1e-13 Score=99.39 Aligned_cols=44 Identities=36% Similarity=0.718 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 6 ~~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
|++++++|.+||+|||+++.+|++||++++|||+.||+.||+.+
T Consensus 2 M~~~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 2 AEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp TTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 56788999999999999999999999999999999999999864
No 9
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=99.42 E-value=5.3e-14 Score=101.07 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHHHHh
Q 015336 6 AEANSSLINSFVEITSSTK-DEALFFLESHQWNLDAAVSTFLD 47 (408)
Q Consensus 6 ~~~~~~~I~qF~~iTg~s~-~~A~~yLe~~~wdLe~Av~~fy~ 47 (408)
+++++++|++||+|||++. ++|++||+++||||+.||+.||-
T Consensus 2 ~~d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 2 SMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp -CCHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred cccHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 3579999999999999996 99999999999999999999984
No 10
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=99.76 Aligned_cols=44 Identities=34% Similarity=0.480 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
..++++|.|||+|||+++.+|++||++++|||+.||+.||+.+.
T Consensus 13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 45788999999999999999999999999999999999998653
No 11
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=100.72 Aligned_cols=44 Identities=27% Similarity=0.560 Sum_probs=40.4
Q ss_pred hhh-hH-HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 6 AEA-NS-SLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 6 ~~~-~~-~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
|++ ++ ++|.|||+|||+++.+|++||++++|||+.||+.||+..
T Consensus 12 m~~~~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 12 MDELRHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp CHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred hhcCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 455 66 899999999999999999999999999999999999764
No 12
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=99.95 Aligned_cols=45 Identities=27% Similarity=0.514 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHhC-CCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 6 AEANSSLINSFVEITS-STKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 6 ~~~~~~~I~qF~~iTg-~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
..+++++|.|||+||| +++.+|++||+.++|||+.||+.||+.+.
T Consensus 15 s~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred ChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4568899999999999 99999999999999999999999998754
No 13
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=98.71 E-value=9.4e-09 Score=99.69 Aligned_cols=43 Identities=21% Similarity=0.493 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
..++++|+|||+|||+++.+|++||++++|||+.||++||+++
T Consensus 13 ~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~ 55 (270)
T 3bq3_A 13 SPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKE 55 (270)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578899999999999999999999999999999999999764
No 14
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.68 E-value=2.5e-08 Score=80.07 Aligned_cols=70 Identities=21% Similarity=0.385 Sum_probs=57.2
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCC--CccCchhhcCCCC-eeEEe
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLT--DLDQTVEQAGIAN-SVVIQ 406 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~--D~s~TL~eagL~n-avvvq 406 (408)
+|+||+.+|+.++..|+.++||.+|+.+|.....-....+.|+ .+||+|.|+ |.+.||+++||.+ ++|+.
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~-~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRIL-VGYPPECLDLSDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCE-ESSCCCCCCCCCSSCBTTTSSCCTTCEEEC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEE-eCCCCcccccCCCCCCHHHcCCCCCCEEEE
Confidence 5899999998764339999999999999998754335678999 799999985 4689999999996 55543
No 15
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.13 E-value=1.3e-06 Score=87.00 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
...++.+.+|.+|||+++++|++||+.++|+|+.||+.||+...
T Consensus 43 ~~~~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~~~ 86 (362)
T 4gew_A 43 MSDEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGSEA 86 (362)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCCcc
Confidence 34567899999999999999999999999999999999997654
No 16
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=97.76 E-value=4.1e-05 Score=57.77 Aligned_cols=43 Identities=9% Similarity=0.271 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 6 AEANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 6 ~~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
+..+.++|.+|+..||.+.+-++.+|+.++||++.|+..|-+-
T Consensus 4 s~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 4 SPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999763
No 17
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=97.64 E-value=6.6e-05 Score=56.32 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
..+.++|.+|+..||.+.+-++.+|+.++||++.|+..|-+-
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999764
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.45 E-value=0.00017 Score=49.33 Aligned_cols=37 Identities=30% Similarity=0.237 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFL 46 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy 46 (408)
.++.|++++++ |.++..|++.|..++||++.|++-+|
T Consensus 4 ~~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 46789999998 99999999999999999999998764
No 19
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.43 E-value=0.0002 Score=59.83 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
.+.++.|...+++||++++.|+..|..++|||+.||+.+|+..
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3557889999999999999999999999999999999999764
No 20
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.0015 Score=50.35 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=55.1
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i 74 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL---FKGKALAD-GKRLSDYSIGPNSKL 74 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE---ETTEECCT-TSBGGGGTCCSSBCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 4567889999999999999999999999999987643224566777 66889977 68999999986 444
No 21
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.17 E-value=0.0014 Score=54.45 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCceeEEEEcCC----CcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 332 LPTTSVQLRLAD----GTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 332 ~p~t~IqIRL~d----G~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.+.++|+||+++ |+.+.+.+..++||.+|..-|.....-......|+ |=-|.|.| +.||.+.||.+ ++|
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI---~~GKiL~D-~~TL~~y~I~~gsti 86 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKKQLQL-GKTLEEQGVAHNVKA 86 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE---ETTEECCT-TSBHHHHTCCSSEEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE---eCCeECCC-CCcHHHcCCCCCCEE
Confidence 457899999999 77899999999999999999988643224556777 66999987 58999999995 544
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.15 E-value=0.0011 Score=50.16 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=52.8
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.++++.+.||.+|...|.....-......|+ |..+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d-~~tL~~~~i~~g~~i 67 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQRESTL 67 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTGGGTCCTTCEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 5789999999999999999999999999987632224456676 67899987 68999999986 444
No 23
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=97.12 E-value=0.00076 Score=51.36 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFL 46 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy 46 (408)
-+.+..|+.|+.-||+.+..||..||--||||..||+.|=
T Consensus 15 ~dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~e 54 (73)
T 2l2d_A 15 LDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYE 54 (73)
T ss_dssp CCHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHH
Confidence 3577889999999999999999999999999999999993
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.12 E-value=0.0013 Score=49.69 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=52.4
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+.++.+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d-~~tL~~~~i~~g~~i 67 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVL 67 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 5789999999999999999999999999987632223456666 66889976 68999999986 443
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.07 E-value=0.002 Score=49.96 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=54.5
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+++..+.||.+|...|.....-......|+ |..|.|.| +.||.+.++.+ ++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKWSTL 70 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 457899999999999999999999999999987632224456776 67899987 58999999985 444
No 26
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.04 E-value=0.0017 Score=52.19 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=55.8
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.....|.||..+|+.+.+++..+.||.+|...|.... .....|+ |-.|.|.|.+.||.+.|+.+ ++|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi---~~Gk~L~D~~~tL~~y~i~~g~~i 72 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI---YQGRLLQDPARTLSSLNITNNCVI 72 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE---ETTEECCCSSCBTTTTTCCTTEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE---ECCEEccCCcCCHHHcCCCCCCEE
Confidence 3467889999999999999999999999999997653 4566777 67899998669999999986 444
No 27
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=96.99 E-value=0.00064 Score=53.92 Aligned_cols=69 Identities=7% Similarity=0.156 Sum_probs=54.4
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCC-ccCC-CccCchhhcCCCC-eeEE
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPP-KQLT-DLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~-k~l~-D~s~TL~eagL~n-avvv 405 (408)
-.|+||-++|...+- +..+.||++|++.|....+.....|.|. .+||+ ++|. +.++||+++||.+ ..|.
T Consensus 5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~~i~~~~~~l~-~~~~p~~~l~~~~~~~l~~lgl~hGd~l~ 76 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEFGFQNNGFSVY-INRNKTGEITASSSKSLHLLKIKHGDLLF 76 (80)
T ss_dssp CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHTCCCTTTCCCC-CSCCGGGGSSSCCCCTTTTTCCCTTCCEE
T ss_pred EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHcCCCCCcceEE-ecCCCCCcccCCCCCCHHHcCCCCCCEEE
Confidence 358999999975443 8889999999999998755445678898 79998 6774 5688999999986 4443
No 28
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=96.92 E-value=0.0027 Score=51.31 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=53.1
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 5889999999999999999999999999987643224556676 67899987 68999999986 444
No 29
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.88 E-value=0.0057 Score=47.88 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=55.1
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
+...|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~---~~Gk~L~d-~~tL~~~~i~~g~~i 74 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE---FQGQVLQD-WLGLGIYGIQDSDTL 74 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE---ETTEECCS-SSBHHHHTCCTTEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE---ECCEEccC-CCCHHHCCCCCCCEE
Confidence 4568889999999999999999999999999988643225567777 66788877 68999999986 544
No 30
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.80 E-value=0.0041 Score=47.90 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=54.5
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
+...|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 71 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 3467899999999999999999999999999987532223456776 66789987 68999999996 444
No 31
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.79 E-value=0.0046 Score=49.24 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 331 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 331 s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
......|.||..+|+.+.+++..+.||.+|...|.....-......|+ |=.+.|.| +.||.+.|+.+ ++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 84 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 84 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TCBTGGGTCCTTCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE---ECCeECCC-cCcHHHCCCCCCCEE
Confidence 344678999999999999999999999999999987632223445676 55788887 58999999996 444
No 32
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.77 E-value=0.0034 Score=47.80 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=51.5
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
..|.||. +|+.+.+.+..+.||++|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i 70 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSGKILKD-DQTVESYHIQDGHSV 70 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE---ECCeEcCC-CCCHHHcCCCCCCEE
Confidence 4677888 899999999999999999999987632224456666 67899987 58999999986 544
No 33
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.74 E-value=0.0052 Score=48.74 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=54.1
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 71 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE---SSSSCCCT-TSBHHHHHCSTTCEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 357889999999999999999999999999988643224556776 67889977 68999999986 444
No 34
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.72 E-value=0.0049 Score=48.18 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=54.7
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |=.+.|.| +.||.+.|+.+ ++|
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~i 79 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVL 79 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 4568999999999999999999999999999987632223456676 55688887 79999999985 544
No 35
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.72 E-value=0.0092 Score=46.94 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=54.0
Q ss_pred CceeEEEEcCCC-cEEEE-EeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADG-TRMVA-RFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG-~Rl~~-rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||..+| +.+.+ .+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLF---YRGKQLEN-GYTLFDYDVGLNDII 76 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE---ETTEECCS-SSBHHHHTCCTTCEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE---ECCeECCC-CCCHHHCCCCCCCEE
Confidence 457889999999 68888 59999999999999988643224566777 56788876 68999999986 443
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.69 E-value=0.0085 Score=48.44 Aligned_cols=70 Identities=14% Similarity=0.272 Sum_probs=55.4
Q ss_pred CCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 331 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 331 s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
+.....|.||..+| .+.+.+..+.||.+|...|.....-......|+ |-.|.|.|.+.||.+.|+.+ ++|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D~~~tL~~ygI~~gstl 82 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY---YSGIELADDYRNLNEYGITEFSEI 82 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE---ETTEEECCTTSBHHHHTCCTTEEE
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE---ECCEECCCCcccHHHCCCCCCCEE
Confidence 34567889999888 788899999999999999988632224556776 77899988559999999986 443
No 37
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.68 E-value=0.0071 Score=47.03 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=53.5
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhC--CCC-CCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR--PGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~--~~~-~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+.+..+.||.+|...|.... .+. .....|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~i 75 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILSD-DVPIRDYRIDEKNFV 75 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE---ETTEECCT-TSBGGGGCCCTTSEE
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE---ECCEECcC-CCCHHHcCCCCCCEE
Confidence 45788999999999999999999999999998851 222 3456676 66888977 68999999985 444
No 38
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.67 E-value=0.0043 Score=49.56 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=52.5
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~i 68 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 68 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 6889999999999999999999999999987632223456666 67788987 57999999985 444
No 39
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.65 E-value=0.0049 Score=47.46 Aligned_cols=67 Identities=9% Similarity=0.217 Sum_probs=54.2
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+++..++||.+|.+.|.....-......|+ |-.+.|.| +.||++.++.+ ++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~---~~G~~L~d-~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEEEDVI 70 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCHHHHTCCTTEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE---ECCEEeCC-CCCHHHcCCCCCCEE
Confidence 357889999999999999999999999999987632224556776 78999987 58999999986 444
No 40
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.65 E-value=0.0084 Score=48.26 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=52.7
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhC--CCC-CCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASR--PGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~--~~~-~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+.+..+.||.+|...|.... .+. .....|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI---YAGKILND-DTALKEYKIDEKNFV 70 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE---ETTEECCT-TSBGGGGTCCSSSEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE---ECCEECCC-cCcHHHCCCCCCCEE
Confidence 578999999999999999999999999998761 222 4566776 66899977 58999999986 444
No 41
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.64 E-value=0.003 Score=49.01 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=53.3
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~i 70 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIHNHSAL 70 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETBEECCT-TCBTTTTTCCTTCEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE---ECCeECCC-CCCHHHCCCCCCCEE
Confidence 357889999999999999999999999999987632224456777 66788887 57999999985 444
No 42
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.59 E-value=0.0071 Score=47.79 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=53.8
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCeeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~navv 404 (408)
+...|.||..+|+.+.+.+..++||.+|...|.....-......|+ |=.|.|.| +.||.+.|+-+++|
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi---~~Gk~L~d-~~tL~~~~i~g~~i 71 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQD-DKKLQEYNVGGKVI 71 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCTTEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCeECCC-CCCHHHcCCCCcEE
Confidence 3567899999999999999999999999999987632223445676 66788987 68999999944554
No 43
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0054 Score=49.71 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=54.2
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~i 89 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 89 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TCBSGGGTCCTTEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 468899999999999999999999999999987632223456777 67788976 68999999986 444
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.54 E-value=0.0094 Score=47.78 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=52.9
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||.. |+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI---FTGKILRD-QDILSQRGILDGSTV 83 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE---ETTEECCT-TSCHHHHTCCTTEEE
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-cCCHHHCCCCCCCEE
Confidence 4567888888 99999999999999999999988642224456666 56788876 68999999986 444
No 45
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.51 E-value=0.0058 Score=48.52 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=53.4
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
-.|.||..+|+.+.+.+..+.||.+|..-|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 76 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 76 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBSGGGTCCTTCEE
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 36789999999999999999999999999987632224556776 66889987 69999999986 444
No 46
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.46 E-value=0.0064 Score=48.27 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=52.5
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |=.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~l 67 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVL 67 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTTTTTCCTTCEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 5789999999999999999999999999987632223455776 56788987 78999999986 444
No 47
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.46 E-value=0.0096 Score=48.99 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=54.7
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~g~ti 90 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF---FSGRPLTD-KMKFEELKIPKDYVV 90 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE---ETTEECCT-TSHHHHCCCSSSCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 3467889999999999999999999999999987633224566777 56788976 68999999985 544
No 48
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.46 E-value=0.017 Score=47.40 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=52.4
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||..+|+ +.+.+..++||.+|...|.....-......|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGKILKD-PDSLAQCGVRDGLTV 83 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE---ETTEECCT-TSCHHHHTCCTTEEE
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHcCCCCCCEE
Confidence 3567889988886 78899999999999999987632224566777 56788977 68999999986 443
No 49
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.45 E-value=0.0096 Score=49.42 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=55.0
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||..+|+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 102 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE---ETTEECCS-SCBTTTTTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 4578889999999999999999999999999987632224567777 56788977 69999999985 444
No 50
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.37 E-value=0.0082 Score=45.97 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=52.4
Q ss_pred ceeEEEEcCCCcEE-EEE-eCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRM-VAR-FNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl-~~r-Fn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+ .+. +..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~---~~g~~L~d-~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF---YRGKQMED-GHTLFDYEVRLNDTI 71 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTTTTTCCTTCEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 35788999999985 888 9999999999999987632224456676 66788976 68999999985 444
No 51
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.35 E-value=0.0085 Score=48.55 Aligned_cols=68 Identities=9% Similarity=0.211 Sum_probs=55.2
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||..+|+.+.+++..++||.+|...|.....-......|+ |-.+.|.| +.||.+.+|.+ ++|
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLi---f~Gk~L~d-~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEEEDVI 88 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCHHHHTCCTTCEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE---ECCeEcCC-CCCHHHCCCCCCCEE
Confidence 4567888989999999999999999999999987633224566777 78999987 58999999985 443
No 52
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.32 E-value=0.0091 Score=48.90 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=54.8
Q ss_pred CCCCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCe
Q 015336 329 DATLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANS 402 (408)
Q Consensus 329 d~s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~na 402 (408)
....+...|-|+...|+.+.+.++.++||++|.+-|.....-....-.|. |=.|.|.| ..||++.++.+.
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLi---f~Gk~LkD-~~TL~dY~I~dg 85 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQ---KGGSVLKD-HISLEDYEVHDQ 85 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBTGGGTCCTT
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEE---eCCEEccC-cCCHHHcCCCCC
Confidence 34567788999999999999999999999999999976532223456776 67789988 689999999973
No 53
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.31 E-value=0.028 Score=47.92 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=53.1
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.+..|.||.. |+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstI 98 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI---FAGKILKD-QDTLIQHGIHDGLTV 98 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE---ETTEEEST-TSCGGGTTCSSSEEE
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE---ECCEEcCC-CCCHHHcCCCCCCEE
Confidence 4577888888 99999999999999999999987632224556776 66888976 58999999986 444
No 54
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0081 Score=49.56 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=52.7
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+.+..++||.+|...|.....-....-.|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 3 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~~i~~g~~i 68 (106)
T 3m62_B 3 SLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI---YSGKVLQD-SKTVSECGLKDGDQV 68 (106)
T ss_dssp CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE---ETTEECCT-TSBTTTTTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE---ECCEECCC-cCCHHHcCCCCCCEE
Confidence 5889999999999999999999999999987632223445776 66889988 69999999985 444
No 55
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.27 E-value=0.0084 Score=47.46 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=54.1
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCcc-CCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQ-LTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~-l~D~s~TL~eagL~n-avv 404 (408)
--+|.||..+|+.+.+.+..+.||.+|..-|.....-......|+ |-.|. |+| +.||.+.|+.+ ++|
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~lL~D-~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI---VDGIVILRE-DLTVEQCQIVPTSDI 78 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCCS-SSBHHHHTCCTTSCE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCEEecCC-cCCHHHcCCCCCCEE
Confidence 457899999999999999999999999999987633224456676 67888 776 68999999986 444
No 56
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.26 E-value=0.0082 Score=50.08 Aligned_cols=68 Identities=24% Similarity=0.289 Sum_probs=55.7
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC---C------------CCeEEEecCCCCccCCCccCchhhcC
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS---A------------RNYQLQAMGFPPKQLTDLDQTVEQAG 398 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~---~------------~~f~L~tt~FP~k~l~D~s~TL~eag 398 (408)
..+|.|+..+|+.+.+.+..+.||.+|..-|.....-. . ..|.|. |..|.|.|++.||++.|
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li---~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT---SAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE---SSSCEECCSSSBHHHHT
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE---eCCcCccCCcCCHHHcC
Confidence 36789999999999999999999999999998753110 0 357887 88999988789999999
Q ss_pred CCC-eeE
Q 015336 399 IAN-SVV 404 (408)
Q Consensus 399 L~n-avv 404 (408)
+.+ ++|
T Consensus 84 I~~g~~l 90 (105)
T 1v2y_A 84 IRNRDEV 90 (105)
T ss_dssp CCSSEEE
T ss_pred CCCCCEE
Confidence 996 443
No 57
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.23 E-value=0.014 Score=45.81 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=53.9
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCeeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~navv 404 (408)
....|.||..+|+.+.+.+..++||.+|...|.....-....-.|+ |=.|.|.| +.||.+.|+-+++|
T Consensus 16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~g~~i 83 (88)
T 4eew_A 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQD-DKKLQEYNVGGKVI 83 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCTTEEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-CCcHHHcCCCCcEE
Confidence 4568999999999999999999999999999987632223445666 66788988 78999999944554
No 58
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.17 E-value=0.029 Score=44.56 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=53.0
Q ss_pred ceeEEEEcCCCcEEEEEeCCC-----CCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHH-----HTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s-----~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
..+|.|+. .|+.+.+.+..+ .||.+|...|.....-....-.|+ |-.|.|.|.+.||.+.|+.+ +.|
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~---~~Gk~L~D~~~~L~~~~i~~g~~i 79 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI---FKGKSLKEMETPLSALGIQDGCRV 79 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE---ETTEEECCSSSBHHHHTCCSSEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE---ECCeecCCCcccHHHCCCCCCCEE
Confidence 56788888 588889999985 999999999987642224566777 56899998888999999986 444
No 59
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=96.16 E-value=0.011 Score=49.10 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=53.9
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+++..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 102 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTTTTTCCTTCEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 467889999999999999999999999999987632223456676 67889987 57999999985 444
No 60
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.09 E-value=0.023 Score=47.06 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=54.6
Q ss_pred CceeEEEEcC---CCcEEEEEeCC-CCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLA---DGTRMVARFNH-HHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~---dG~Rl~~rFn~-s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
+..+|.||.+ +|+.+.+.+.. ++||.+|...|.....-....-.|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~---~~Gk~L~D-~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS---GKAGFLKD-NMSLAHYNVGAGEIL 98 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE---CSSSBCCT-TSBTTTTTCSSSCEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 4578899998 89999999997 9999999999988743224566777 56788877 68999999986 444
No 61
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=96.03 E-value=0.018 Score=47.11 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=52.3
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....|.||.. |+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gI~~g~~I 91 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI---FAGKILKD-QDTLSQHGIHDGLTV 91 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE---ETTEEECT-TCCTGGGTCCTTCEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHcCCCCCCEE
Confidence 3567888888 88899999999999999999987632223455666 66788976 68999999986 444
No 62
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=96.02 E-value=0.022 Score=47.49 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=52.8
Q ss_pred CceeEEEEcCC----------CcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 333 PTTSVQLRLAD----------GTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 333 p~t~IqIRL~d----------G~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
+..+|.|++++ |+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~---~~Gk~L~D-~~tL~~y~i~~ 98 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ---YEGIFIKD-SNSLAYYNMAS 98 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE---ETTEEECT-TSBHHHHTCCS
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE---ECCEECCC-CCCHHHCCCCC
Confidence 46789999985 77889999999999999999988643224566777 56888876 68999999986
No 63
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.98 E-value=0.019 Score=46.89 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=52.6
Q ss_pred eeEEEEcCCC----cEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015336 335 TSVQLRLADG----TRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 335 t~IqIRL~dG----~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 405 (408)
..|.||..+| +.+.+.+..+.||.+|...|.....-......|+ |-.|.|.|...||.+.|+.+ ++|+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~gk~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YMEQLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETTEEECCSSSBHHHHTCCTTEEEE
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECCEECCCCcccHHHCCCCCCCEEE
Confidence 5677888755 6788999999999999999998743224456676 55689988778999999986 5543
No 64
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.97 E-value=0.021 Score=46.57 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.....|.||..+|+ ..+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~ygI~~gstI 88 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGKILKD-PDSLAQCGVRDGLTV 88 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBHHHHTCCTTCEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHCCCCCCCEE
Confidence 34678899999886 68899999999999999987632223455666 66888977 68999999986 443
No 65
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.94 E-value=0.039 Score=43.98 Aligned_cols=68 Identities=10% Similarity=0.188 Sum_probs=53.1
Q ss_pred CceeEEEEcCCCc--EEEEEeCCCCCHHHHHHHHHHhCC-CC-CCCeEEEecCCCCccCCCccCchhhc--CCCC-eeE
Q 015336 333 PTTSVQLRLADGT--RMVARFNHHHTIRDIHRFIDASRP-GS-ARNYQLQAMGFPPKQLTDLDQTVEQA--GIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~--Rl~~rFn~s~TV~dv~~fv~~~~~-~~-~~~f~L~tt~FP~k~l~D~s~TL~ea--gL~n-avv 404 (408)
....|.||..+|+ .+.+.+..++||.+|...|....+ .. .....|+ |-.|.|.| +.||.+. ++.+ ++|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi---~~Gk~L~D-~~tL~~~~~~i~~~~~i 80 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI---YSGKLLLD-HQCLRDLLPKQEKRHVL 80 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE---ETTEECCS-SSCHHHHSCSSSCSEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE---ECCEECcC-cCCHHHHhcCCCCCCEE
Confidence 3468999999998 566667799999999999998742 22 4567787 66899987 5899999 9986 443
No 66
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.87 E-value=0.018 Score=47.67 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 331 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 331 s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
..+...|-|+...|+.+.+.+..++||++|...|.....-....-.|. |..|.|.| ..||.+.|+.+ ++|
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi---~~Gk~L~D-~~TL~dygI~~gstl 95 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK---KWYTIFKD-HVSLGDYEIHDGMNL 95 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCS-SCBHHHHTCCTTEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 345578889999999999999999999999999987632113444565 77999977 69999999996 444
No 67
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.72 E-value=0.023 Score=49.11 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=54.4
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCCCCc---------------------------c
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPK---------------------------Q 386 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~FP~k---------------------------~ 386 (408)
-.|.|||+||+...++++.+.||..+-..|...-.-. ...|.|+ ...|.. .
T Consensus 12 r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 12 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLV-RELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEE-EECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred ccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccccccc-ccccccccccCchhhccccccccchhHHHHHHHH
Confidence 3689999999999999999999999999998763222 3568898 454422 1
Q ss_pred --------CCCccCchhhcCCCC-eeEEee
Q 015336 387 --------LTDLDQTVEQAGIAN-SVVIQK 407 (408)
Q Consensus 387 --------l~D~s~TL~eagL~n-avvvqk 407 (408)
.-|.+.||.|-|+.. .+|+.|
T Consensus 91 L~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred hcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 115589999999994 666665
No 68
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.70 E-value=0.022 Score=43.27 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
.++.|++.++ .|.++..|+.-|..++||++.|++-.|....
T Consensus 9 ~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 9 DEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp CHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4678898887 5999999999999999999999999997654
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.65 E-value=0.031 Score=45.06 Aligned_cols=67 Identities=6% Similarity=0.042 Sum_probs=50.7
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
....+|.|++ .|+.+.+.+..+.||.+|...|.....-....-.|+ |..|.| |+. ||.+.+|.+ +.|
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~---~~Gk~L-dd~-tL~~~~i~~g~~i 82 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM---YKGLVP-EDK-TLREIKVTSGAKI 82 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB---SSSBCC-SSS-BHHHHCCCTTEEE
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCeeC-CcC-cHHHCCCCCCCEE
Confidence 3456788885 688889999999999999999987632223445555 788999 434 999999986 444
No 70
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=95.65 E-value=0.0019 Score=61.59 Aligned_cols=42 Identities=10% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
.++++|.+|+..||...+-++.+|+.++||++.|+..|-+-.
T Consensus 197 ~q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 238 (250)
T 1jkg_B 197 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLK 238 (250)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566899999999999999999999999999999999996543
No 71
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.026 Score=47.19 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=54.3
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
+.-.|.||..+|+.+.+.+..+.||.+|..-|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~gstI 76 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---WAGKQLED-GRTLSDYNIQRESTL 76 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTTTTTCCSSCEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 4457899999999999999999999999999987632223456666 56888976 68999999986 444
No 72
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.56 E-value=0.041 Score=45.11 Aligned_cols=70 Identities=7% Similarity=0.157 Sum_probs=54.2
Q ss_pred CCceeEEEEcCCCc--EEEEEeCCCCCHHHHHHHHHHhCCCC--CCCeEEEecCCCCccCCCccCchhhc--CCCCeeEE
Q 015336 332 LPTTSVQLRLADGT--RMVARFNHHHTIRDIHRFIDASRPGS--ARNYQLQAMGFPPKQLTDLDQTVEQA--GIANSVVI 405 (408)
Q Consensus 332 ~p~t~IqIRL~dG~--Rl~~rFn~s~TV~dv~~fv~~~~~~~--~~~f~L~tt~FP~k~l~D~s~TL~ea--gL~navvv 405 (408)
.....|.||.++|+ .+.+.+..+.||.+|...|....++. .....|+ |-.|.|.| +.||.+. ++.+...|
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI---y~Gk~L~D-~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV---YSGRLLPD-HLQLKDILRKQDEYHMV 96 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE---ETTEEECT-TSBTHHHHTTTCSEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE---ECCEECCC-CCCHHHHhcCCCCCCEE
Confidence 34578999999998 56788899999999999999753332 2567787 67899987 6899999 99874433
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.54 E-value=0.036 Score=43.71 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=51.4
Q ss_pred CCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 331 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 331 s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
+..+..+.+. .+|+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 9 ~~~~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~l 78 (85)
T 2kd0_A 9 SHSTIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI---FKGKVLVE-TSTLKQSDVGSGAKL 78 (85)
T ss_dssp SCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE---ETTEECCT-TCBTTTTTCCTTEEE
T ss_pred cCCcEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCeECCC-cCCHHHCCCCCCCEE
Confidence 3345555444 4889999999999999999999987632224556776 66888976 68999999986 544
No 74
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=95.49 E-value=0.042 Score=44.99 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=52.8
Q ss_pred CCceeEEEEcCCCcEEEE--EeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCCCCccCCCccCchhhcCC-CC-eeEE
Q 015336 332 LPTTSVQLRLADGTRMVA--RFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGI-AN-SVVI 405 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~--rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~FP~k~l~D~s~TL~eagL-~n-avvv 405 (408)
..+..|-||..+|+.+.+ .+..+.||.+|...|.....+. ...-.|+ |-.|.|.| +.||.+.++ .+ ++|+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi---~~Gk~L~D-~~tL~dy~I~~~g~ti~ 91 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL---LKGKVLHD-NLFLSDLKVTPANSTIT 91 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE---ETTEEECT-TCBGGGSCCBTTBCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEE---ECCEECcC-cCCHHHcCcCCCCCEEE
Confidence 456789999999997665 6679999999999994333333 4456777 67899987 589999999 64 5543
No 75
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.49 E-value=0.03 Score=44.89 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=49.2
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
..|.||. |+.+.+.+..+.||.+|...|.....-......|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~y~I~~gstI 84 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL---LAGAPLED-EATLGQCGVEALTTL 84 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE---ETTEECCT-TSBHHHHTCCSSCEE
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 4556665 89899999999999999999987632224456776 56888976 68999999986 443
No 76
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.46 E-value=0.025 Score=40.66 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
...++.|++.+++ |-++..|+.-|..++||++.|++-.|..
T Consensus 6 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4457789999887 9999999999999999999999988863
No 77
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.45 E-value=0.038 Score=44.74 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=51.4
Q ss_pred CceeEEEEcCCCcEE-EEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015336 333 PTTSVQLRLADGTRM-VARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl-~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 405 (408)
...+|.||+ .|+.+ .+.+..++||.+|...|.....-....-.|+ |..|.|.|. ||.+.||.+ +.|+
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi---~~Gk~L~D~--tL~~~~I~~g~~i~ 74 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGGTLKDD--DWGNIKMKNGMTVL 74 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE---ETTEECCSS--CCCSCCCCSSCEEE
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCcCCCCC--CHHHCCCCCCCEEE
Confidence 356777885 67888 5999999999999999988743224555666 788999885 999999986 4443
No 78
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.40 E-value=0.023 Score=45.59 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (408)
.++.|++.+++ |.++.+|+.-|..++||++.|++-.|...++
T Consensus 29 ~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 46889999986 9999999999999999999999999986553
No 79
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.39 E-value=0.11 Score=43.97 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=52.8
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCC--------CCCCeEEEecCCCCccCCCccCchhhcCCC
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPG--------SARNYQLQAMGFPPKQLTDLDQTVEQAGIA 400 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~--------~~~~f~L~tt~FP~k~l~D~s~TL~eagL~ 400 (408)
.....|.||+.+|+.+.+.+..++||.+|...|....+. ......|+ |=-|.|.| +.||.+.++.
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI---y~GK~LeD-~~TL~~y~I~ 86 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---YQGRFLHG-NVTLGALKLP 86 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE---ETTEEECS-SCBTTTTTCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE---ECCcCCCC-CCcHHHcCCC
Confidence 345788899999999999999999999999999974221 13456776 77899987 5899999985
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.38 E-value=0.035 Score=47.36 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=50.5
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
.|.||..+|+.+.+++..+.||.+|...|.....-......|+ |..+.|.| +.||.+.|+.+
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~---~~g~~L~d-~~tL~~~~i~~ 63 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQK 63 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCT
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEE---ECCeECcC-cccHHHhccCC
Confidence 5789999999999999999999999999987632223445666 56888876 68999999986
No 81
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.36 E-value=0.057 Score=44.39 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=52.5
Q ss_pred ceeEEEEcCCC---cEEEEEeCC---------CCCHHHHHHHHHHhCC-CC-CCC-eEEEecCCCCccCCCccCchhhcC
Q 015336 334 TTSVQLRLADG---TRMVARFNH---------HHTIRDIHRFIDASRP-GS-ARN-YQLQAMGFPPKQLTDLDQTVEQAG 398 (408)
Q Consensus 334 ~t~IqIRL~dG---~Rl~~rFn~---------s~TV~dv~~fv~~~~~-~~-~~~-f~L~tt~FP~k~l~D~s~TL~eag 398 (408)
...|.||..+| +.+.+.|.. +.||.+|...|....+ .. ... ..|+ |-.|.|.| +.||.+.|
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi---~~Gk~L~D-~~tL~~y~ 87 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI---YCGRKLKD-DQTLDFYG 87 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE---ETTEECCT-TCBHHHHT
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE---ECCeECCC-CCcHHHcC
Confidence 46789999999 788888665 5999999999998753 22 445 6676 67899976 58999999
Q ss_pred CCC-eeE
Q 015336 399 IAN-SVV 404 (408)
Q Consensus 399 L~n-avv 404 (408)
+.+ ++|
T Consensus 88 i~~g~~i 94 (107)
T 1x1m_A 88 IQPGSTV 94 (107)
T ss_dssp CCTTCEE
T ss_pred CCCCCEE
Confidence 986 443
No 82
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.33 E-value=0.038 Score=48.93 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=54.4
Q ss_pred CCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 331 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 331 s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
..+...|.||..+|+.+.++++.++||.+|...|.....-......|+ |-.+.|.| +.||.+.||.+ ++|
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~---~~g~~L~d-~~tL~~~~i~~~~~l 87 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 87 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTGGGTCCTTCEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCccccc-cCCHhHcCCccccee
Confidence 345678999999999999999999999999999987632223445666 56788987 68999999985 443
No 83
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.30 E-value=0.0029 Score=48.19 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=49.1
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
.|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~---~~gk~L~d-~~tL~~~~i~~ 63 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI---FAGKELPN-HLTVQNCDLEQ 63 (76)
Confidence 4678889999899999999999999999987532113445555 66788877 68999999986
No 84
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.31 E-value=0.023 Score=44.51 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
...++.|++.+++ |.+++.|+.-|..++||++.||+-.|...
T Consensus 27 ~~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 3457889999985 89999999999999999999999998754
No 85
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.29 E-value=0.096 Score=45.05 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=52.8
Q ss_pred CceeEEEEcCCCcEE-EEEeCCCCCHHHHHHHHHHhCCCC--C-----CCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 333 PTTSVQLRLADGTRM-VARFNHHHTIRDIHRFIDASRPGS--A-----RNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl-~~rFn~s~TV~dv~~fv~~~~~~~--~-----~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
....|.||+.+|+.+ .+.|..++||.+|.+-|....+.. . ..-.|+ |=.|.|.| +.||.+.++..
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI---y~GK~LeD-~~TLsdy~I~~ 87 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI---SAGKVLEN-SKTVKDYRSPV 87 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE---ETTEECCT-TSBGGGGSCCT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE---ECCeECcC-CCcHHHcCCCc
Confidence 577899999999988 699999999999999997754422 1 234565 77899988 58999999985
No 86
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.23 E-value=0.043 Score=44.13 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (408)
.++.|+|++++ |.++..|++-|..++||++.|++-.|+...+
T Consensus 21 n~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 21 MSRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 47889999995 9999999999999999999999999986554
No 87
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.04 Score=44.12 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=52.3
Q ss_pred eEEEEcCCCcEEEEE--eCCCCCHHHHHHHH-HHhCCCC-CCCeEEEecCCCCccCCCccCchhhcCC--CCeeEEe
Q 015336 336 SVQLRLADGTRMVAR--FNHHHTIRDIHRFI-DASRPGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGI--ANSVVIQ 406 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~r--Fn~s~TV~dv~~fv-~~~~~~~-~~~f~L~tt~FP~k~l~D~s~TL~eagL--~navvvq 406 (408)
.|-||..+|+.+.+. +..++||.+|...| ... .+. .....|+ |-.|.|.| +.||.+.++ .+++|..
T Consensus 3 qI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-~gip~~~QrLi---~~Gk~L~D-~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 3 HLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-KASHISEIKLL---LKGKVLHD-NLFLSDLKVTPANSTITV 74 (87)
T ss_dssp EEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTT-SCSSSTTEEEE---ETTEECCT-TCBHHHHCCCGGGCEEEE
T ss_pred EEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHh-cCCChHHEEEE---ECCEECcC-cCCHHHcCCCCCCCEEEE
Confidence 688999999988877 44999999999999 543 333 5667887 77899988 589999999 3566643
No 88
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=95.07 E-value=0.076 Score=45.48 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=51.8
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCC-----C---CCCeEEEecCCCCccCCCccCchhhcCCC
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPG-----S---ARNYQLQAMGFPPKQLTDLDQTVEQAGIA 400 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~-----~---~~~f~L~tt~FP~k~l~D~s~TL~eagL~ 400 (408)
...|.||+.+|+++.+.|..++||.+|.+.|....|. . .....|+ |=.|.|.| +.||.+.++.
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI---y~GK~LeD-~~TL~~y~I~ 87 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---YQGRFLHG-NVTLGALKLP 87 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE---SSSSEEES-SCBTGGGCCC
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE---ECCcCCCC-CCcHHHcCCC
Confidence 4678899999999999999999999999999874321 1 2345666 88899987 5899999997
No 89
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.07 E-value=0.042 Score=40.10 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 6 AEANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 6 ~~~~~~~I~qF~~iTg~-s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
....++.|++.+++ |- ++..|+.-|..++||++.||+-.|..
T Consensus 8 e~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 8 EVRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 34556789999887 66 99999999999999999999998865
No 90
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.01 E-value=0.037 Score=38.38 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~ 47 (408)
.++.|++.+++ |-+++.|+.-|..++||++.|++-.|.
T Consensus 4 ~e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 35789999885 999999999999999999999988775
No 91
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.00 E-value=0.055 Score=46.08 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=54.0
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.|+..+|+.+.+.+..+.||.+|...|.....-......|+ |..+.|.| +.||.+.|+.+ ++|
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~i 143 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 143 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 357889999999999999999999999999987632224566776 67899976 68999999985 444
No 92
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=94.81 E-value=0.081 Score=47.25 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=52.8
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+++..++||.+|...|.....-......|+ |=.|.|.| +.||.+.|+.+ ++|
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~y~I~~gstI 67 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEE---ECCccccC-cCcHHHcCCCCCCEE
Confidence 5889999999999999999999999999987633224556777 56788987 68999999986 443
No 93
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.80 E-value=0.08 Score=45.97 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=52.4
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCC-CCccCCCccCchhhcCCCC-eeE
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF-PPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~F-P~k~l~D~s~TL~eagL~n-avv 404 (408)
-.|.||..+|+.+.+.++.++||.+|..-|.....-....-.|+ .| ..+.|.| +.||.+.|+.+ ++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~--~~~~g~~L~d-~~tL~~y~i~~~~~l 71 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLA--VHPSGVALQD-RVPLASQGLGPGSTV 71 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEE--EETTCCBCCT-TSCGGGGTCCTTCEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE--EcCCCCCCCC-CCCHHHcCCCCCCEE
Confidence 36889999999999999999999999999987632223345665 27 6889966 68999999995 443
No 94
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=94.79 E-value=0.054 Score=49.61 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=54.5
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstI 172 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 172 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TCBGGGGTCCTTCEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE---ECCEECCC-CCCHHHCCCCCCCEE
Confidence 468899999999999999999999999999987632223456676 77899988 68999999986 444
No 95
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.79 E-value=0.12 Score=41.14 Aligned_cols=70 Identities=10% Similarity=0.162 Sum_probs=52.5
Q ss_pred CceeEEEEcCCCcEEEE-EeCCCCCHHHHHHHHHHhCCCCCCCeEEEecC-CCCccCCCccCchhhcCCCC-eeEE
Q 015336 333 PTTSVQLRLADGTRMVA-RFNHHHTIRDIHRFIDASRPGSARNYQLQAMG-FPPKQLTDLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~-rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~-FP~k~l~D~s~TL~eagL~n-avvv 405 (408)
...+|.|++ .|+.+.+ .+..+.||.+|..-|.....-....-.|+ -. |-.|.|.| +.||.+.||.+ +.|+
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi-~~k~~Gk~L~D-~~~L~~~~i~~g~~l~ 78 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL-GLKVKGKPAEN-DVKLGALKLKPNTKIM 78 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE-SCEETTEECCT-TSBHHHHTCCTTEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE-eeccCCcCcCC-CCCHHHcCCCCCCEEE
Confidence 346788886 7888888 88999999999999988643224556676 23 55688876 68999999985 4443
No 96
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.026 Score=46.14 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=51.0
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
..+|.||. +|+.+.+++..+.||.+|...|.....-....-.|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~gI~~g~tI 94 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSGKILKD-DQTVESYHIQDGHSV 94 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE---ETTEECCT-TSBTTTTTCCTTEEE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-cCcHHHCCCCCCCEE
Confidence 34677886 888899999999999999999987632224455676 56788987 69999999996 444
No 97
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.64 E-value=0.038 Score=41.70 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (408)
..++.|++.+++ |-++..|++-|..++||++.|++-.|+..++
T Consensus 8 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 8 PPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 356789999985 9999999999999999999999999987654
No 98
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.61 E-value=0.09 Score=45.62 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=54.7
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
+...|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d-~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 148 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE---ECCeecCC-CCCHHHcCCCCCCEE
Confidence 3467889999999999999999999999999987532224567777 66799988 68999999986 444
No 99
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.52 E-value=0.16 Score=40.88 Aligned_cols=72 Identities=8% Similarity=0.196 Sum_probs=53.5
Q ss_pred CceeEEEEcC---CCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecC---CCCc--cCCCccCchhhcCCCC-ee
Q 015336 333 PTTSVQLRLA---DGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMG---FPPK--QLTDLDQTVEQAGIAN-SV 403 (408)
Q Consensus 333 p~t~IqIRL~---dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~---FP~k--~l~D~s~TL~eagL~n-av 403 (408)
...+|.|+.+ +|..+..||..+.||++|...|...-.-......|. .. +|.+ .|+|++.||..-|+.+ ..
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~-~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLS-YESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEE-EECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEE-EEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 3567888864 788899999999999999999988643224555665 33 5533 3678899999999996 44
Q ss_pred EE
Q 015336 404 VI 405 (408)
Q Consensus 404 vv 405 (408)
|.
T Consensus 87 I~ 88 (97)
T 1wjn_A 87 LL 88 (97)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 100
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.48 E-value=0.098 Score=43.06 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=48.1
Q ss_pred eeEEEEcCCCcEEEEEeC-CCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCc-----------cC---CCccCchhhcCC
Q 015336 335 TSVQLRLADGTRMVARFN-HHHTIRDIHRFIDASRPGSARNYQLQAMGFPPK-----------QL---TDLDQTVEQAGI 399 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn-~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k-----------~l---~D~s~TL~eagL 399 (408)
-.|+||-.+|+. .+.+. .+.||.+|..-|.....-......|. |..+ .| .+++.||.+.||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~---~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLS---TNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCB---SSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEE---ECCccccccCccccccccccCCCCCCHHHCCC
Confidence 468899999975 56788 89999999999987643333445554 3333 44 466899999999
Q ss_pred CC-eeEE
Q 015336 400 AN-SVVI 405 (408)
Q Consensus 400 ~n-avvv 405 (408)
.+ ++|.
T Consensus 84 ~~G~~L~ 90 (107)
T 1wf9_A 84 AHGSMVY 90 (107)
T ss_dssp CTTCEEE
T ss_pred CCCCEEE
Confidence 86 4443
No 101
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.46 E-value=0.066 Score=38.92 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 7 EANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~-s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
...++.|++.+++ |- ++..|+.-|..++||++.||+-.|..
T Consensus 10 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3446789999886 78 99999999999999999999988753
No 102
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.40 E-value=0.13 Score=41.09 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=51.9
Q ss_pred eeEEEEcCCCcEE--EE-EeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCCCCccCCCccCchhhcCCCC-eeEEee
Q 015336 335 TSVQLRLADGTRM--VA-RFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVIQK 407 (408)
Q Consensus 335 t~IqIRL~dG~Rl--~~-rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avvvqk 407 (408)
..|-|+...|+.. .+ .+..+.||.+|..-|....... ...-.|. ..+=.|.|.| +.||.+.|+.+ ++|+.|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~-~~~~Gk~L~D-~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLR-LDPKGKSLKD-EDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEE-SSTTSCCCCT-TCBTTTSSCCSEEEEEEC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEE-ecCCCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 4577888888775 36 8899999999999999853332 3445666 3343678877 68999999996 666654
No 103
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.38 E-value=0.072 Score=39.16 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 8 ANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~-s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
..++.|++.+++ |. ++..+++-|..++||++.||+..|...+
T Consensus 8 ~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 8 HFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 346789999887 88 5556799999999999999999997643
No 104
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.12 E-value=0.094 Score=40.82 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (408)
..++.|++.+++ |-++..|+.-|..++||++.|++-.|+..++
T Consensus 28 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 28 IDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp SCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 346789999875 9999999999999999999999999986543
No 105
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.95 E-value=0.051 Score=41.49 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
..++|.+..+.||+....|+.-|+.++|||+.||.-.-..
T Consensus 9 t~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 9 SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3478999999999999999999999999999999877544
No 106
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.85 E-value=0.019 Score=41.00 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
.++.|++.+++ |.++..|++-|.+++||++.|++-.|....
T Consensus 4 e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 4 EKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp CHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 45678888887 999999999999999999999999997543
No 107
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.79 E-value=0.12 Score=52.06 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=54.2
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhC--CCC-CCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR--PGS-ARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~--~~~-~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
...|.||..+|+.+.+.+..++||.+|...|.... ... .....|+ |-.|.|.| +.||.+.||.+ ++|
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi---y~GK~L~D-~~tL~dygI~~gstI 77 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILSD-DVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE---SSSSEECS-SSBTTTTCCCTTSCE
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE---ECCeecCC-cCCHHHcCCCCCCEE
Confidence 46789999999999999999999999999998842 222 3456666 78999987 58999999985 444
No 108
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.79 E-value=0.27 Score=41.81 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=54.0
Q ss_pred CCCceeEEEE-cCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCeeE
Q 015336 331 TLPTTSVQLR-LADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANSVV 404 (408)
Q Consensus 331 s~p~t~IqIR-L~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~navv 404 (408)
...+.+|.|. .++|.++++-|..+.||++|.+.|.....-....-.|+ |=.|.|.| +.||++.|+.+...
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI---y~GKiLKD-~eTL~~~gIk~g~T 82 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR---YSGKILKN-NETLVQHGVKPQEI 82 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE---ETTEEECS-SCCHHHHSCCSSCE
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE---ECCeEcCC-cchHHHcCCCCCCE
Confidence 4456677777 67788999999999999999999987632114445565 77999987 57999999986433
No 109
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.56 E-value=0.13 Score=40.28 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 8 ANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~-s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
..++.|++.+++ |. ++..+++-|..++||++.||+-.|...+
T Consensus 28 ~ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 28 RYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp TSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 456789999987 75 7888899999999999999999997543
No 110
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=93.49 E-value=0.31 Score=39.42 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=54.0
Q ss_pred CCCceeEEEEcCCCc--EEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCc---cCCCccCchhhcCCCC-eeE
Q 015336 331 TLPTTSVQLRLADGT--RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPK---QLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 331 s~p~t~IqIRL~dG~--Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k---~l~D~s~TL~eagL~n-avv 404 (408)
.....+|.|+...++ .+.++|..+.||.+|..-|.....-....-.|+ ...+.+ .|.+++.||.+.|+.+ ++|
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~-~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQ-VFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEE-EEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEE-EecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 345778889987775 689999999999999999987632224556676 443444 5656689999999986 444
No 111
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.47 E-value=0.16 Score=44.79 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=54.7
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
+...|.||..+|+.+.+++..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~D-~~tL~~y~i~~g~tl 163 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 163 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TSBSGGGTCCTTCEE
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE---ECCccCCC-CCcHHHhCCCCCCEE
Confidence 3457889999999999999999999999999987632224567777 56788987 68999999986 444
No 112
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.32 E-value=0.18 Score=40.22 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccccc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAAA 52 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~~~ 52 (408)
..+.|++.++ .|-++..|++-|..++||++.|++-.|+..++.
T Consensus 29 ~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 5678999998 599999999999999999999999999876543
No 113
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=92.99 E-value=0.21 Score=48.98 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.+...|.||..+|+.+.+.+..+.||.+|..-|.....-....-.|+ |-.|.|.| +.||.+.|+.+ ++|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi---~~Gk~L~D-~~TLsdygI~~gstL 300 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 300 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---eCCeecCC-CCCHHHcCCCCCCEE
Confidence 45678899999999999999999999999999987632223456676 56889976 68999999985 443
No 114
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=92.83 E-value=0.019 Score=48.80 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+.|+| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~~I~~gsti 67 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE---ECCEECCC-CCchhhhccCCCCEE
Confidence 4678889999999999999999999999987522113345555 77888987 68999999985 443
No 115
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=92.08 E-value=0.66 Score=37.27 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=52.4
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
..+|.|+-.+|+.+.+++..+.++..|.+.+.....-....+.|+ |=.+.|.+ +.|+++++|-+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 68 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 68 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 457777878999999999999999999988876543335677887 78899987 48999999985
No 116
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.04 E-value=0.78 Score=37.81 Aligned_cols=65 Identities=12% Similarity=0.234 Sum_probs=52.6
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
...+|.|+-.+|+.+.+++..++++..|.+.+.....-....+.|+ |=-+.|.+ +.|+++++|-+
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 87 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 87 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE---SSSSBCCT-TSCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567888888999999999999999999988766533334677787 88899986 48999999985
No 117
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=92.02 E-value=0.028 Score=49.69 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.||.+ ++|
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstL 67 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEEccc-cCcHHHcCCCCCCEE
Confidence 4778999999999999999999999999987532113344555 77889987 68999999985 443
No 118
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.98 E-value=0.22 Score=37.74 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQW-NLDAAVSTFLDNAAA 51 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~w-dLe~Av~~fy~~~~~ 51 (408)
++.|++.++ .|-++..|+.-|..++| |++.|++-.|+..++
T Consensus 20 e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 20 GSALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 356888888 59999999999999999 999999999976543
No 119
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=91.93 E-value=0.63 Score=35.36 Aligned_cols=64 Identities=13% Similarity=0.244 Sum_probs=51.7
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCe
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANS 402 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~na 402 (408)
.+|.|+-.+|+.+.+++..++++..|.+.......-....+.|+ |-.+.|.+ +.|.++++|-+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~~l~medg 65 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMEDE 65 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE---ETTEECCT-TCCTTTTTCCTT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE---ECCEEcCC-CCCHHHcCCCCC
Confidence 36778888999999999999999999988766533335677887 77889987 489999999863
No 120
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.81 E-value=0.13 Score=38.91 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHc-CCCHHHHHHHHHhcccc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESH-QWNLDAAVSTFLDNAAA 51 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~-~wdLe~Av~~fy~~~~~ 51 (408)
..+.|+|.++ .|-++..|++-|..+ +||++.|++-.|+..++
T Consensus 9 ~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 9 ELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 4567999998 599999999999999 79999999999986554
No 121
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=91.73 E-value=0.33 Score=38.77 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHc-CCCHHHHHHHHHhcccc
Q 015336 7 EANSSLINSFVEITSSTKDEALFFLESH-QWNLDAAVSTFLDNAAA 51 (408)
Q Consensus 7 ~~~~~~I~qF~~iTg~s~~~A~~yLe~~-~wdLe~Av~~fy~~~~~ 51 (408)
...++.|++.++ .|-++..|++-|..+ |||++.|++-.|+..++
T Consensus 27 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 27 VANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 346788999998 599999999999988 59999999999987554
No 122
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.63 E-value=0.75 Score=37.69 Aligned_cols=67 Identities=7% Similarity=0.206 Sum_probs=47.9
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeEE
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avvv 405 (408)
..+.|++ .|+.+.+.+..++||.+|..-|.....-....=.|+ .||...|.| +.||.+.+|.+ ++|+
T Consensus 10 ~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi--~~~~gkL~D-~~tLs~~~I~~gstL~ 77 (100)
T 2dzm_A 10 LDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK--GWKTGDVED-STVLKSLHLPKNNSLY 77 (100)
T ss_dssp EEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE--CCSSSCCCT-TSBHHHHCCCSEEEEE
T ss_pred EEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE--ccCCCCCCC-cCCHHHcCCCCCCEEE
Confidence 3455666 788889999999999999999987522212223455 567666766 68999999986 4443
No 123
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.41 E-value=0.33 Score=37.79 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcC-CCHHHHHHHHHhcccc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQ-WNLDAAVSTFLDNAAA 51 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~-wdLe~Av~~fy~~~~~ 51 (408)
..++.|++.++ .|-++..|++-|..++ ||++.|++-.|+..++
T Consensus 8 ~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 8 LDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp SCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 45678999999 5999999999999998 5899999999987654
No 124
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.29 E-value=0.37 Score=35.89 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 8 ANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~-s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
..++.|++.+++ |. ++..+++-|..++||++.||+-.|..
T Consensus 16 ~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 16 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 346689999887 75 68888999999999999999998864
No 125
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=91.23 E-value=0.48 Score=38.25 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=51.5
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
..+|.|+-.+|+.+.+++..+++|..|.+.+.....-....+.|+ |=-+.|.+ +.|+++++|-+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 70 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 70 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 456777778899999999999999999988876533334567777 88999987 48999999985
No 126
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.13 E-value=0.36 Score=34.13 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHh
Q 015336 8 ANSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLD 47 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~-s~~~A~~yLe~~~wdLe~Av~~fy~ 47 (408)
..++.|++.+++ |. +...+++-|..++||++.||+-.|.
T Consensus 6 ~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 346788999886 75 6788899999999999999998874
No 127
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=90.77 E-value=0.52 Score=38.21 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=52.4
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC-eeE
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.|-|..++|.|.+++...+.|+.+|.+-..+.-.-....|.|. |-+|.| |.++.+.=+||-| |.+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lk---h~~k~l-DLSlpfRlsgLpnnAkL 76 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLK---FQRTVL-DLSLQWRFANLPNNAKL 76 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEE---ETTEEE-SSSCBHHHHCCCSSCEE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEE---eCCEec-cccceeEecCCCCCCEE
Confidence 6889999999999999999999998776655433336789998 456777 7789999999996 543
No 128
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=90.64 E-value=0.76 Score=36.89 Aligned_cols=65 Identities=12% Similarity=0.234 Sum_probs=51.7
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
...+|.|+-.+|+.+.+++..++++..|.+.+.....-....+.|+ |=.+.|.+ +.|+++++|-+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~dl~med 80 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 80 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567777778899999999999999999988766533334566776 88899986 58999999985
No 129
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=90.62 E-value=1.3 Score=34.40 Aligned_cols=64 Identities=6% Similarity=0.136 Sum_probs=51.5
Q ss_pred ceeEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 334 TTSVQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 334 ~t~IqIRL~dG~-Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
..+|.|+-.+|+ .+.+++..++++..|.+.+.....-....+.|+ |=.+.|.+ +.|+++++|-+
T Consensus 7 ~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~~l~med 71 (79)
T 3a4r_A 7 ELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF---FDGTKLSG-KELPADLGLES 71 (79)
T ss_dssp CEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE---ETTEECCS-CCCHHHHTCCT
T ss_pred EEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 467888889996 899999999999999988766533334567777 77888886 58999999985
No 130
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=90.24 E-value=1.2 Score=37.07 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=52.8
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
...+|.|+-.+|+.+.+++..+.++..|.+.+.....-....+.|+ |=-+.|.+ +.|+++++|-.
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi---FdG~~L~~-~~Tp~dl~mED 89 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL---FDGTPIDE-TKTPEELGMED 89 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE---SSSCBCCS-SSHHHHHHCSS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567888888999999999999999999988766533334677777 88899987 58999999986
No 131
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=89.66 E-value=0.49 Score=40.17 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=46.3
Q ss_pred EEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCC
Q 015336 337 VQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIA 400 (408)
Q Consensus 337 IqIRL~dG~-Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~ 400 (408)
|+||.--|+ .+.+.+..++||.+|..-|.....-......|+ |-.|.|+| +.||.+.|+.
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi---~~Gk~LeD-~~TLsdy~I~ 63 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY---KDDQLLDD-GKTLGECGFT 63 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBHHHHTCC
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE---ECCeECCC-CCCHHHcCcc
Confidence 566666675 478899999999999999987632223456676 66888977 6999999999
No 132
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.97 E-value=0.73 Score=32.36 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
..++.|++.++ .|-++..|++-|..++ |++.|++-.|+.
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 8 VNQQQLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SCHHHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 35678999998 5999999999999997 999999988753
No 133
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.43 E-value=1.9 Score=34.76 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=57.0
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
-+.+|+|-++--...+.|.+..-++++|+..|..........|.|. ...=..+--|.+.||.|.||..
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll-~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLL-KDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEE-SCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEe-cCCCCCcccchhcchhhhhhhh
Confidence 5789999999988899999999999999999987754446789998 5555555557889999999986
No 134
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=88.12 E-value=0.73 Score=34.38 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 10 SSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 10 ~~~I~qF~~iT-g~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
++.|.++.++- +.+..+.+.-|+++++|++.||+..++-..
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 45667776664 899999999999999999999999997543
No 135
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.72 E-value=1.8 Score=34.39 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=49.1
Q ss_pred eeEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCC-CCcc---CCCccCchhhcCCCC-eeE
Q 015336 335 TSVQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF-PPKQ---LTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 335 t~IqIRL~dG~-Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~F-P~k~---l~D~s~TL~eagL~n-avv 404 (408)
.+|.|+-.... .+.+++..+.||.+|..-|.....-....-.|. ..- ..+. |.+++.||.+.|+.+ ++|
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~-~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l 82 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELE-LYGADDKFYSKLDQEDALLGSYPVDDGCRI 82 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCE-EECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEE-EeCCCCccccccCCCcCCHhHCCCCCCCEE
Confidence 67777775553 588999999999999999998743224555666 333 2343 555579999999986 444
No 136
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=87.50 E-value=0.75 Score=38.04 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVST 44 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~ 44 (408)
.+.|.--|+-||+|.+.|+.-|+.|+|||-.||-.
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~ 100 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMR 100 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 46788889999999999999999999999999853
No 137
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=87.31 E-value=2.5 Score=34.97 Aligned_cols=64 Identities=8% Similarity=0.194 Sum_probs=50.3
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
...+|.|+- +|+.+.+++..+.++..|.+.+.....-....+.|+ |=.+.|.+ +.|.++++|-+
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~---FdG~rl~~-~~Tp~dl~med 93 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL---YDGIRIQA-DQTPEDLDMED 93 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEE---ECCeEcCC-CCCHHHcCCCC
Confidence 345677777 899999999999999999988766533224567776 77888986 58999999985
No 138
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=86.83 E-value=2.4 Score=34.28 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=51.8
Q ss_pred CCCceeEEEEcCCCc--EEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCC-CCc---cCCCccCchhhcCCCC-ee
Q 015336 331 TLPTTSVQLRLADGT--RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF-PPK---QLTDLDQTVEQAGIAN-SV 403 (408)
Q Consensus 331 s~p~t~IqIRL~dG~--Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~F-P~k---~l~D~s~TL~eagL~n-av 403 (408)
+....+|.|...+.+ .+.++|..+.||.+|..-|.....-....-.|. ..= ..+ .|.+++.||.+.++.+ +.
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi-~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALE-LYDDSGSKVAVLSDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEE-EECSSSCBCCCSSGGGSCHHHHCCCSCCE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEE-EecCCCcccceecCCcCCHHHCCCCCCCE
Confidence 455778888876664 689999999999999999987632224555665 211 113 3556689999999986 44
Q ss_pred E
Q 015336 404 V 404 (408)
Q Consensus 404 v 404 (408)
|
T Consensus 90 I 90 (97)
T 2kj6_A 90 L 90 (97)
T ss_dssp E
T ss_pred E
Confidence 4
No 139
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=86.43 E-value=0.83 Score=38.23 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
.++.|++.+++=-.++..++.-|..++||++.||+..|..
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3678888887544588999999999999999999999965
No 140
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.41 E-value=2.2 Score=33.39 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 9 NSSLINSFVEITSS-TKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 9 ~~~~I~qF~~iTg~-s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
.+-+++|..+|||+ |...-.+-|++.++||..||...-+.
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 44579999999998 56778889999999999999877654
No 141
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=85.59 E-value=2.5 Score=35.63 Aligned_cols=66 Identities=8% Similarity=0.160 Sum_probs=52.3
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
....+|.|+-.||..+.+++..+.++..|.+............+.|+ |=.+.|.+ +.|.++++|-+
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFl---FDG~rI~~-~~TP~dL~MED 103 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEE 103 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEE---ECCeECCC-CCCHHHcCCCC
Confidence 35667777778899999999999999999987765433335677777 77888887 58999999985
No 142
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=85.29 E-value=1.5 Score=31.58 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=34.3
Q ss_pred hHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 9 NSSLINSFVEI-TSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 9 ~~~~I~qF~~i-Tg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
.++.+.+.+++ -.++..+++.-|+.++||++.||+....-
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 35567777777 58999999999999999999999998865
No 143
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=83.23 E-value=1.8 Score=36.53 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
..++.|++.+++ |.++..|+.-|..++||++.|++-.|...+
T Consensus 77 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 356789999984 999999999999999999999999987654
No 144
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.74 E-value=1.9 Score=32.53 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHhccccc
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQW-NLDAAVSTFLDNAAAA 52 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~w-dLe~Av~~fy~~~~~~ 52 (408)
.+.|++.++ .|-+.+.|++-|..++| |++.|++-.|+..++.
T Consensus 10 e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 10 PSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 346788888 69999999999999865 9999999999876543
No 145
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=81.91 E-value=4.3 Score=33.87 Aligned_cols=70 Identities=10% Similarity=0.209 Sum_probs=48.6
Q ss_pred ceeEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCC-CCc---cCCCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGF-PPK---QLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~-Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~F-P~k---~l~D~s~TL~eagL~n-avv 404 (408)
..+|.|+-..+. .+.++|..+.||.+|..-|.....-....-.|. ..= -.+ .|.+++.||.+.||.+ ++|
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~-~~g~~~~~~~~l~~D~~tL~~y~i~~g~~i 81 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQ-LFDGDDQLKGELTDGAKSLKDLGVRDGYRI 81 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEE-EECSSSSEEEECCCCSSBTTTTTCCSSEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEE-EecCCCccccccCCCcCCHHHCCCCCCCEE
Confidence 467777766554 588999999999999999988633224455665 211 123 3455689999999986 544
No 146
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=81.73 E-value=3 Score=31.90 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcccc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAAA 51 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~~ 51 (408)
..+.|+|.+++=-.+.....+-|..+++|++.||+-.|...++
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4557888877544677777999999999999999999987554
No 147
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=81.68 E-value=2.5 Score=41.43 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=52.1
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecC-CCCccCCCccCchhhcCCCC-eeEE
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMG-FPPKQLTDLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~-FP~k~l~D~s~TL~eagL~n-avvv 405 (408)
...+|.|+. .|+.+.+.+..+.||++|..-|.....-....=.|+ .. |..|.|.| +.||.+.||.+ +.|+
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi-~~k~~Gk~l~D-~~~L~~~~ik~g~~l~ 75 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLL-NLKYKGKTAAD-NVKISALELKPNFKLM 75 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEET-TCBSSSSBCCT-TSBTTSSCCC--CEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEe-ecccCCcccCc-cccHHHcCCCCCCEEE
Confidence 356788996 788999999999999999999987632212334665 22 77788887 68999999985 4443
No 148
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=81.25 E-value=2.7 Score=31.78 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 9 NSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 9 ~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
..+.|.+.++ .|-++.+|+.-|+.++.|+|.|++=-|...+
T Consensus 19 e~e~V~~Lvs-MGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 19 ERQCVETVVN-MGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHH-HHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3456776664 5899999999999999999999999998654
No 149
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=80.20 E-value=4 Score=29.73 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~ 47 (408)
++.|++.|+ .|-+.+.|++-|..++||++.|.+--.+
T Consensus 12 ~~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMG-EGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 367888877 4999999999999999999999876543
No 150
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.19 E-value=3.5 Score=30.25 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
....++.++.+.==++...-...|..++|||+.||..-....
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 344478899887667999999999999999999999988654
No 151
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=79.00 E-value=12 Score=30.46 Aligned_cols=68 Identities=9% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCCceeEEEEcCCCc-EEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCCe
Q 015336 331 TLPTTSVQLRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIANS 402 (408)
Q Consensus 331 s~p~t~IqIRL~dG~-Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~na 402 (408)
.....+|.|+-.+|. .+.+++..+.+++-|.+.......-....+.|+ |=...|.. +.|.++++|-+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~---FDG~rI~~-~~TP~dLdMEDg 90 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFF---FDGTKLSG-RELPADLGMESG 90 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEE---ETTEECCS-CSCHHHHTCCTT
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE---ECCEEcCC-CCCHHHcCCCCC
Confidence 345667888889995 789999999999999887665533334567776 77788875 579999999863
No 152
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=78.89 E-value=4.9 Score=29.41 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 11 SLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 11 ~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
..|.+.|+ .|-+.+.|++-|..++||++.|.+...+.
T Consensus 11 ~~I~~L~~-lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 11 SEIERLMS-QGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 45888877 49999999999999999999998877654
No 153
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=76.97 E-value=3.4 Score=34.98 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=43.4
Q ss_pred EEcCCCc-EEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 339 LRLADGT-RMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 339 IRL~dG~-Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
||+.-++ .+.+.+..++||.+|..-|.....-....-.|+ |=.|.|+| +.||.+.|+.+
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI---~~Gk~LeD-~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY---KDDQLLDD-GKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE---eCCeECCC-cCCHHHcCCCc
Confidence 4444455 577789999999999999986522113344666 66788877 79999999986
No 154
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.74 E-value=4.6 Score=30.83 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 8 ANSSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 8 ~~~~~I~qF~~iT-g~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
..++.+.++.++. ..+..+.+.-|+++++|++.||+..+.-.
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN 59 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 4566788887775 89999999999999999999999998744
No 155
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=75.67 E-value=5 Score=31.56 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=44.2
Q ss_pred eeEEEEcC-CCcE-EEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecC-----CCCccCCCccCchhhcCCCC-eeE
Q 015336 335 TSVQLRLA-DGTR-MVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMG-----FPPKQLTDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 335 t~IqIRL~-dG~R-l~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~-----FP~k~l~D~s~TL~eagL~n-avv 404 (408)
.+|.|.-. .+.+ ..+||..+.||.+|..-|.....-....-.|. .- |-.+.++| +.||.+-|+.+ ++|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi-~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~i 78 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQ-LIDDRGITIEKNMAN-DKQLGYYQCRDEFVI 78 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEE-EECTTSCEEESSCCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEE-EecCCCCceeeEcCC-CCCHHHCCCCCCCEE
Confidence 34555432 2333 58999999999999999987532223334554 21 34455555 69999999986 444
No 156
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=75.33 E-value=0.58 Score=42.83 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred eEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchh
Q 015336 336 SVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVE 395 (408)
Q Consensus 336 ~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~ 395 (408)
.|-||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|+| +.||.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLI---f~GK~LeD-~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV---NNGFIAPN-TELVT 57 (189)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEE---ecCeECCC-CCccc
Confidence 4678999999999999999999999999987522114455666 77899987 57887
No 157
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=73.92 E-value=6.8 Score=32.36 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=43.3
Q ss_pred ceeEEEEcCC--C--cEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCC
Q 015336 334 TTSVQLRLAD--G--TRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIA 400 (408)
Q Consensus 334 ~t~IqIRL~d--G--~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~ 400 (408)
..+++|.+.| + ..+.+.+..++||.+|.+-|...-.-....-.|+ |-.+ +.+++.||.+.|+.
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli---~ggk-ll~D~~TL~~ygI~ 88 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV---IGQR-LARDQETLHSHGVR 88 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTE-EECTTCBTGGGTCC
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe---ccCe-EccCcCcHHHcCCC
Confidence 5667777766 3 4678888999999999999986522112222454 4455 44447999999995
No 158
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=73.84 E-value=7.5 Score=35.84 Aligned_cols=65 Identities=8% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
....+|.|+. +|..+.+++..+.++..|.+............+.|+ |=-+.|.+ +.|.++++|-+
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL---FDGqRI~~-ddTPeDLdMED 119 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL---YDGIEIQA-DQTPEDLDMED 119 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE---ETTEECCS-SCCTTTTTCCT
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE---ECCeecCC-CCCHHHcCCCC
Confidence 3456788875 899999999999999999987766543335667776 77888887 68999999986
No 159
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=73.55 E-value=8.4 Score=35.37 Aligned_cols=65 Identities=8% Similarity=0.177 Sum_probs=51.3
Q ss_pred CCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCCCCCeEEEecCCCCccCCCccCchhhcCCCC
Q 015336 332 LPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGSARNYQLQAMGFPPKQLTDLDQTVEQAGIAN 401 (408)
Q Consensus 332 ~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~k~l~D~s~TL~eagL~n 401 (408)
....+|.|+. +|..+.+++..+.++..|.........-....+.|+ |=.+.|.+ +.|.+++++-+
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~---FdG~rI~~-~~TP~dL~MEd 91 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL---YDGIRIQA-DQTPEDLDMED 91 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3456788876 899999999999999999987755433234667776 88899987 68999999986
No 160
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=75.05 E-value=0.74 Score=39.34 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 8 ANSSLINSFVEITSST-KDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s-~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
..+-+|+|..+|||+. ...=++-|+++++||..||..+-+..
T Consensus 17 ~~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~ 59 (129)
T 2lva_A 17 QGQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDER 59 (129)
Confidence 4455899999999996 78888999999999999999886543
No 161
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=68.45 E-value=6.6 Score=36.06 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
-++|.+..+.||+.--.|+.-|+.++||++.|+.-.-..+
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG 43 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERG 43 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4689999999999999999999999999999998776543
No 162
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=68.16 E-value=22 Score=32.83 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=41.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCC-C--CccCCCccCchhhcCCCC-eeEE
Q 015336 347 MVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGF-P--PKQLTDLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 347 l~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~F-P--~k~l~D~s~TL~eagL~n-avvv 405 (408)
++++|...+||.+|.+.|...-.-. ...+.|- .-+ . ...|.|.++||+||+|.. .+|+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW-~~~~~~~~~~L~~~~~tl~d~~L~~~Q~il 216 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLW-NKYMSNTYEQLSKLDNTIQDAGLYQGQVLV 216 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEE-ECSSSSSCEECCCTTSBTTTTTCCTTEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEE-EecCCCCHhhhcCCCCCHHHhCCCCCCEEE
Confidence 4588999999999999998863222 2467776 322 2 244668889999999994 5554
No 163
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=65.66 E-value=16 Score=26.32 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=38.0
Q ss_pred CChhhhHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 4 PTAEANSSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 4 ~~~~~~~~~I~qF~~iT-g~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
|.+--.+++|.|-..+. |-+..+-.+-|+.+|-|++.||+..+...
T Consensus 4 p~~~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 4 PASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp CGGGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred ccccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 45556788999887765 78999999999999999999999988653
No 164
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=65.43 E-value=6.8 Score=37.98 Aligned_cols=38 Identities=18% Similarity=0.016 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~ 47 (408)
-++|.+..+.||+.--.|+.-|+.++||++.|+.---.
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999987765
No 165
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=61.62 E-value=13 Score=31.30 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 11 SLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 11 ~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
++|.+|++ .|-++..|+.-|..+++|++.||+-.|..
T Consensus 78 ~~v~~L~e-MGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 78 QLMSKFKE-MGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45777765 58999999999999999999999998865
No 166
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=61.45 E-value=16 Score=33.46 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=41.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCC-CC--ccCCCccCchhhcCCCC-eeEE
Q 015336 346 RMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGF-PP--KQLTDLDQTVEQAGIAN-SVVI 405 (408)
Q Consensus 346 Rl~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~F-P~--k~l~D~s~TL~eagL~n-avvv 405 (408)
..+++|...+||.+|...|...-.-. .+.+.|- .-+ .. ..|++.++||+||+|.. ..|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW-~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW-NKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEE-EEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEE-EecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 36789999999999999998863222 2356665 222 22 34567789999999994 4444
No 167
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=55.29 E-value=35 Score=26.28 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=37.8
Q ss_pred ChhhhHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 5 TAEANSSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 5 ~~~~~~~~I~qF~~iT-g~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
+...-+++|.|-.+|. .......+..|+.++.|.|.+|+..+++
T Consensus 9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 3445667888888886 6788999999999999999999999985
No 168
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=54.07 E-value=28 Score=33.93 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=48.0
Q ss_pred CCCceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCCCC------ccCCCccCchhhcCC
Q 015336 331 TLPTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPP------KQLTDLDQTVEQAGI 399 (408)
Q Consensus 331 s~p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~FP~------k~l~D~s~TL~eagL 399 (408)
......|.|+|+||+.+.+++..+.|+++|.+-|...-.-. ..-|.|. ..-+. ...-+.+.+|.+-+.
T Consensus 82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~-~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLV-RELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEE-CCC----------CCCTTSBTGGGTC
T ss_pred cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEE-EEecccccchHHHHHhcCchhHhhCC
Confidence 34456899999999999999999999999999998763222 3568888 44432 122355677776554
No 169
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=49.69 E-value=27 Score=34.10 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=51.1
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCC----CCCCeEEEec--CCCCccC-CCccCchhhcCCCC-eeE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPG----SARNYQLQAM--GFPPKQL-TDLDQTVEQAGIAN-SVV 404 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~----~~~~f~L~tt--~FP~k~l-~D~s~TL~eagL~n-avv 404 (408)
..+|.|+++ +.....+|..+.||.|+...|...-++ ....|-|. . ..|.|-. -+...||+..+|.+ +.|
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~-~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l 79 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLF-LSDDDPKKGIWLEAGKALDYYMLRNGDTM 79 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEE-ECCSSGGGCEECCTTSBGGGGTCCTTCEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEe-ccCCCCCcCEeccCCCCHHHhCCCCCcee
Confidence 357899999 778899999999999999999776543 25778888 4 2244332 24467999999986 444
No 170
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=46.53 E-value=56 Score=25.57 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=50.6
Q ss_pred eEEEEc--CCCcEEEEEeCCCCCHHHHHHHHHHhCCCC--CCC-eEEEecCCCCccCCCccCchhhcCCCCeeEEe
Q 015336 336 SVQLRL--ADGTRMVARFNHHHTIRDIHRFIDASRPGS--ARN-YQLQAMGFPPKQLTDLDQTVEQAGIANSVVIQ 406 (408)
Q Consensus 336 ~IqIRL--~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~--~~~-f~L~tt~FP~k~l~D~s~TL~eagL~navvvq 406 (408)
.|-|.| -.|+.+-+|+...+||..|.+-|..+-.-. ..+ |.|. ..=+...|.+ +.+|.+.++.|+-+++
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~ir-v~NK~~~L~~-~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIR-VVNKDKVFSG-ECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEE-EGGGTEEEET-TSBTGGGTCCTTCEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEE-EecCCEEEcC-CCEEeeCCcCCCCEEE
Confidence 455666 688999999999999999999887763221 234 7787 4555555665 5799999999866543
No 171
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=45.76 E-value=37 Score=27.72 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=47.8
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhC-CCCCCCeEEEecCCCC----ccCCCccCchhh
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASR-PGSARNYQLQAMGFPP----KQLTDLDQTVEQ 396 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~-~~~~~~f~L~tt~FP~----k~l~D~s~TL~e 396 (408)
--|+|=+.||+-..+-+..++|++||-+.+.... ......|.|+ -..|- |.|+|.+.-++-
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv-E~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV-ECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE-EEETTTTEEEEECSSSCHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE-EecCCCCcEEeccCchhHHHH
Confidence 4688999999999999999999999999987543 3337889999 68885 556676554443
No 172
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=43.24 E-value=26 Score=33.31 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=43.6
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCCCC--ccCCCccCchhhc
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPP--KQLTDLDQTVEQA 397 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~FP~--k~l~D~s~TL~ea 397 (408)
...|.|.|+||+.+.+.+..+.|++||.+-|...-.-. ..-|.|. ..-+. +..-|.+..|.+.
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~-~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLA-IWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEE-EEEETTEEEECCTTSBHHHH
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEE-EEcCCCccchhccchhHHHh
Confidence 45789999999999999999999999999998763222 3447776 22221 1223445666553
No 173
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=39.16 E-value=35 Score=31.93 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHhC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Q 015336 6 AEANSSLINSFVEITS-------STKDEALFFLESHQWNLDAAVSTFL 46 (408)
Q Consensus 6 ~~~~~~~I~qF~~iTg-------~s~~~A~~yLe~~~wdLe~Av~~fy 46 (408)
+..+++.|++|.+... .+...-.+||.+++||++.|...+-
T Consensus 27 ~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~ 74 (296)
T 1aua_A 27 DSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFE 74 (296)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456778888877642 6789999999999999999987763
No 174
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=37.21 E-value=16 Score=36.41 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
..++.|++.|+ .|-++..|+.-|..++||++.||+-.|..-+
T Consensus 167 ~~~~~i~~l~~-MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip 208 (368)
T 1oqy_A 167 EYETMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLLTGIP 208 (368)
T ss_dssp THHHHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTTTSST
T ss_pred chHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 36778888887 5999999999999999999999999987533
No 175
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=35.14 E-value=52 Score=31.60 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHh-------CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015336 6 AEANSSLINSFVEIT-------SSTKDEALFFLESHQWNLDAAVSTFL 46 (408)
Q Consensus 6 ~~~~~~~I~qF~~iT-------g~s~~~A~~yLe~~~wdLe~Av~~fy 46 (408)
+..+++.|+||.+.. -.+...-.+||.+.+||++.|+..+-
T Consensus 36 t~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 36 TKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456778899998875 36788999999999999999988774
No 176
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=34.20 E-value=69 Score=23.48 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
++.|.+.|+ .|-|...|++-|..++.|++.|.+-..+-
T Consensus 8 e~~Ia~L~s-mGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMS-QGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHH-cCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 456887776 59999999999999999999999887764
No 177
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=34.06 E-value=30 Score=33.06 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=35.8
Q ss_pred CCCceeEEEEcCCCcEEEEEeCC--CCCHHHHHHHHHHhCCCCCCCeEEEecCCCC
Q 015336 331 TLPTTSVQLRLADGTRMVARFNH--HHTIRDIHRFIDASRPGSARNYQLQAMGFPP 384 (408)
Q Consensus 331 s~p~t~IqIRL~dG~Rl~~rFn~--s~TV~dv~~fv~~~~~~~~~~f~L~tt~FP~ 384 (408)
+.|..+|.|-|+||+.+.+.|.. +.|+++|.+-+. .+.....-|.|. ..-|.
T Consensus 2 ~~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~lg-L~~~~~~~FaL~-~~~~~ 55 (322)
T 4dxa_B 2 SPEFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMR-LSQETQQYFTIW-ICSEN 55 (322)
T ss_dssp ---CCEEEEECTTSCEEEEECTTGGGCCHHHHHTTSS-CCTTGGGGEEEE-EECSS
T ss_pred CCCceEEEEEEECCcEEEEEEcCCCCCcHHHHHHHhC-cCccccCeeEEE-EECCc
Confidence 46788999999999999999999 999999954321 111112358888 45554
No 178
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=32.08 E-value=76 Score=33.86 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=38.2
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQ 378 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~ 378 (408)
...++|.|+||+.+.+.+....|+++|.+.|...-.-. ..-|.|.
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~ 308 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLY 308 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEE
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeE
Confidence 45789999999999999999999999999998874322 4568887
No 179
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=29.12 E-value=32 Score=25.14 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015336 8 ANSSLINSFVEIT-SSTKDEALFFLESHQWNLDAAVSTFL 46 (408)
Q Consensus 8 ~~~~~I~qF~~iT-g~s~~~A~~yLe~~~wdLe~Av~~fy 46 (408)
.+.+.|+++.++. +.+.++-+.-|++++|+++.||++..
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567788888875 78999999999999999999998765
No 180
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=28.99 E-value=26 Score=33.39 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=9.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015336 12 LINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (408)
Q Consensus 12 ~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~ 47 (408)
...-.+.+||++.+.|+..|+.+++++-.||-....
T Consensus 247 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 282 (306)
T 1nri_A 247 AVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILS 282 (306)
T ss_dssp HHHHHHHHSCCCC-----------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHh
Confidence 355566789999999999999999999999998753
No 181
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=27.52 E-value=40 Score=30.65 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHh----------CCCHHHHHHHHHHcCCCHHHHHHHHH
Q 015336 8 ANSSLINSFVEIT----------SSTKDEALFFLESHQWNLDAAVSTFL 46 (408)
Q Consensus 8 ~~~~~I~qF~~iT----------g~s~~~A~~yLe~~~wdLe~Av~~fy 46 (408)
.+++.|++|.+.. ..+......||.+++||++.|...+-
T Consensus 7 ~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~ 55 (262)
T 1r5l_A 7 LLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLK 55 (262)
T ss_dssp --CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3445566665543 25789999999999999999988764
No 182
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=27.28 E-value=73 Score=32.80 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=37.2
Q ss_pred ceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC--CCCeEEE
Q 015336 334 TTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS--ARNYQLQ 378 (408)
Q Consensus 334 ~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~--~~~f~L~ 378 (408)
...|+|.|+||+.+.+.+..+.|++||.+-|...-.-. ..-|.|.
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~ 262 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALF 262 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEE
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEE
Confidence 46789999999999999999999999999998764322 2358887
No 183
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=27.12 E-value=1.5e+02 Score=20.94 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLD 47 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~ 47 (408)
++.|...|+ .|-|.+.|++-|..++.|++.|.+-..+
T Consensus 5 e~~I~~L~s-~Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 5 SSEIENLMS-QGYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHH-TTBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345666655 4899999999999999999999887654
No 184
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=27.06 E-value=66 Score=30.37 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=43.8
Q ss_pred CceeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCCCCcc--CCCccCchhhcC
Q 015336 333 PTTSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPKQ--LTDLDQTVEQAG 398 (408)
Q Consensus 333 p~t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~FP~k~--l~D~s~TL~eag 398 (408)
....|.|.|+|| .+.+.+..+.|++||.+-|...-.-. ..-|.|. .. .... .-|.+.+|.+.+
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~-~~-~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQ-YT-IKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEE-EE-ETTEEEECCTTSBGGGSS
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEE-EE-eCCcCeeCCCccCHHHcC
Confidence 356889999999 67799999999999999988753222 3458887 33 2222 125566776654
No 185
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=24.99 E-value=1.2e+02 Score=25.16 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 015336 8 ANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNA 49 (408)
Q Consensus 8 ~~~~~I~qF~~iTg~s~~~A~~yLe~~~wdLe~Av~~fy~~~ 49 (408)
...++|.++++ .|-+...|+.-|..++.|.+.|++-.|...
T Consensus 7 ~e~~~v~~l~~-MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 7 SERQCVETVVN-MGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 45678888866 699999999999999999999999998764
No 186
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=24.63 E-value=73 Score=29.62 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=43.2
Q ss_pred eeEEEEcCCCcEEEEEeCCCCCHHHHHHHHHHhCCCC-CCCeEEEecCCCCcc--CCCccCchhhcCC
Q 015336 335 TSVQLRLADGTRMVARFNHHHTIRDIHRFIDASRPGS-ARNYQLQAMGFPPKQ--LTDLDQTVEQAGI 399 (408)
Q Consensus 335 t~IqIRL~dG~Rl~~rFn~s~TV~dv~~fv~~~~~~~-~~~f~L~tt~FP~k~--l~D~s~TL~eagL 399 (408)
..|.|.|+||+ +.+.+..+.|++||.+-|...-.-. ..-|.|. ..-+... .-|.+..|.+.+.
T Consensus 2 i~~~V~l~d~~-~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~-~~~~~~~~~wLd~~~~l~~q~~ 67 (294)
T 1ef1_A 2 ISVRVTTMDAE-LEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQ-YQDTKGFSTWLKLNKKVTAQDV 67 (294)
T ss_dssp EEEEEEETTEE-EEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEE-EEBTTSCEEECCSSSBGGGSCB
T ss_pred EEEEEEECCce-EEEEECCCCcHHHHHHHHHHHcCCCCcceeEEE-EECCCCceeecccccCHHhhcc
Confidence 46899999995 6799999999999999997753222 3458887 3323322 2255667776643
No 187
>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A
Probab=23.71 E-value=40 Score=33.70 Aligned_cols=44 Identities=25% Similarity=0.570 Sum_probs=30.6
Q ss_pred CCceEEEEEecCc--------eeecCCCCCCCCChhhHHHHHHhhhc---CC--CCCccCCCC
Q 015336 222 ENVSHNITFWRNG--------FTVDDGPLRGMDDPANASFLEVSIMR---SE--CPRELEPAD 271 (408)
Q Consensus 222 ~~~~~~it~w~nG--------F~VdDGplr~ydDP~N~~fL~~~I~~---G~--~P~EL~~~~ 271 (408)
++....|+||||| |.|+-.-|+.|| .||+ +|.+ .. +|.-...+|
T Consensus 62 ~~kAKrV~fyrNGD~~f~G~~~~V~~~r~~tfd-----~lL~-~lT~~Ls~~v~LP~GVR~i~ 118 (373)
T 4atu_I 62 EKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFD-----ALLA-DLTRSLSDNINLPQGVRYIY 118 (373)
T ss_dssp --CCEEEEEEESSCSSCCCEEEEECTTTCSSHH-----HHHH-HHHHHSCCSSSCTTSCSEEE
T ss_pred CccceEEEEEeCCCCCCCCeEEEECCcccCCHH-----HHHH-HHHHHhhccCCCCceeEEEE
Confidence 4567899999999 888887777766 7888 8654 23 455555555
No 188
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=23.59 E-value=77 Score=26.24 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Q 015336 10 SSLINSFVEITSSTKDEALFFLESHQW-NLDAAVSTFLDNAAA 51 (408)
Q Consensus 10 ~~~I~qF~~iTg~s~~~A~~yLe~~~w-dLe~Av~~fy~~~~~ 51 (408)
.+.|.+.++ .|-+...|+.-|..+++ |++.|++-.+...++
T Consensus 4 ~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 4 ESSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp THHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 356777777 89999999999999977 899999988876554
No 189
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=22.91 E-value=1.4e+02 Score=23.60 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=32.1
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 015336 13 INSFVEITS--STKDEALFFLESHQWNLDAAVSTFLDNAA 50 (408)
Q Consensus 13 I~qF~~iTg--~s~~~A~~yLe~~~wdLe~Av~~fy~~~~ 50 (408)
+.|-.+|.| +++.+-+.-.=.+++|++.||+.+++...
T Consensus 38 Ld~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 38 LDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 567788887 68888888888999999999999997643
No 190
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=20.97 E-value=48 Score=26.95 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 22 STKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 22 ~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
.++++||++| +|||.|-+.||..
T Consensus 72 L~e~q~Rqll----fDle~aY~~F~~~ 94 (96)
T 2j9u_A 72 LTETQIRELL----FDLELAYKSFYAL 94 (96)
T ss_dssp CCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHH
Confidence 5789999999 7899999999863
No 191
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=20.62 E-value=1.3e+02 Score=29.44 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHh--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 015336 6 AEANSSLINSFVEIT--------SSTKDEALFFLESHQWNLDAAVSTFLD 47 (408)
Q Consensus 6 ~~~~~~~I~qF~~iT--------g~s~~~A~~yLe~~~wdLe~Av~~fy~ 47 (408)
++.+.+.|++|.+.. -.+...-.+||.+++||++.|+..+-.
T Consensus 9 ~~~q~~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 9 SPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp CHHHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 456777888887652 367789999999999999999887743
No 192
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=20.56 E-value=49 Score=27.18 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 015336 22 STKDEALFFLESHQWNLDAAVSTFLDN 48 (408)
Q Consensus 22 ~s~~~A~~yLe~~~wdLe~Av~~fy~~ 48 (408)
.++++||++| +|||.|-+.||..
T Consensus 77 L~e~q~Rqll----fDle~aY~~F~~~ 99 (102)
T 2j9w_A 77 LDDSQVRQML----FDLESAYNAFNRF 99 (102)
T ss_dssp CCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHH
Confidence 5789999999 7899999999964
Done!