Query 015338
Match_columns 408
No_of_seqs 276 out of 1577
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02229 alpha-galactosidase 100.0 6.8E-98 1E-102 757.2 29.7 361 33-401 13-375 (427)
2 PLN02808 alpha-galactosidase 100.0 3.4E-94 7.3E-99 725.4 30.9 318 81-401 22-342 (386)
3 PLN02692 alpha-galactosidase 100.0 4.2E-94 9.1E-99 726.8 31.1 319 79-400 44-365 (412)
4 KOG2366 Alpha-D-galactosidase 100.0 4.9E-82 1.1E-86 619.9 20.1 325 72-398 14-361 (414)
5 PLN03231 putative alpha-galact 100.0 6.3E-79 1.4E-83 608.5 22.1 265 91-357 1-352 (357)
6 PLN02899 alpha-galactosidase 100.0 4.4E-73 9.6E-78 589.7 23.9 278 80-360 20-385 (633)
7 PF02065 Melibiase: Melibiase; 100.0 1.4E-45 3E-50 375.4 19.4 316 51-391 1-377 (394)
8 COG3345 GalA Alpha-galactosida 100.0 3.7E-33 8E-38 285.1 16.6 218 14-247 218-487 (687)
9 PLN02355 probable galactinol-- 99.9 3.9E-23 8.5E-28 220.3 23.1 288 88-389 195-581 (758)
10 PLN02219 probable galactinol-- 99.9 4.9E-23 1.1E-27 219.2 23.3 289 88-389 191-573 (775)
11 PLN02684 Probable galactinol-- 99.9 4.1E-22 8.9E-27 212.0 22.1 283 93-389 204-572 (750)
12 PLN02711 Probable galactinol-- 99.9 1.7E-21 3.7E-26 207.5 20.3 282 93-388 215-600 (777)
13 PF05691 Raffinose_syn: Raffin 99.9 2.7E-21 5.8E-26 207.4 21.9 283 93-389 197-584 (747)
14 cd06592 GH31_glucosidase_KIAA1 99.7 8.8E-17 1.9E-21 159.4 19.2 172 89-278 12-234 (303)
15 PLN02982 galactinol-raffinose 99.7 1.2E-16 2.5E-21 170.8 17.8 283 93-388 224-684 (865)
16 cd06593 GH31_xylosidase_YicI Y 99.5 1.7E-12 3.6E-17 128.9 17.2 169 98-280 14-236 (308)
17 cd06589 GH31 The enzymes of gl 99.3 6.3E-11 1.4E-15 115.4 17.9 168 88-280 3-198 (265)
18 PF10566 Glyco_hydro_97: Glyco 99.3 4.7E-12 1E-16 123.5 9.2 209 104-332 28-256 (273)
19 cd06599 GH31_glycosidase_Aec37 99.2 2.4E-10 5.3E-15 114.2 17.0 165 104-280 25-250 (317)
20 cd06598 GH31_transferase_CtsZ 99.2 4.5E-10 9.8E-15 112.2 16.8 165 104-280 20-243 (317)
21 cd06604 GH31_glucosidase_II_Ma 99.2 4.6E-10 9.9E-15 113.1 16.2 161 103-279 19-248 (339)
22 PRK10658 putative alpha-glucos 99.2 1.8E-09 3.8E-14 117.7 20.1 165 101-279 276-494 (665)
23 cd06595 GH31_xylosidase_XylS-l 99.1 2.2E-09 4.8E-14 106.1 17.0 160 104-278 21-222 (292)
24 cd06600 GH31_MGAM-like This fa 99.1 3.9E-09 8.4E-14 105.6 17.7 160 104-279 20-226 (317)
25 cd06591 GH31_xylosidase_XylS X 99.1 4.4E-09 9.5E-14 105.3 17.3 163 104-280 20-243 (319)
26 cd06601 GH31_lyase_GLase GLase 99.1 4.4E-09 9.6E-14 105.9 17.3 159 105-279 21-230 (332)
27 PF01055 Glyco_hydro_31: Glyco 99.1 1.5E-09 3.3E-14 112.6 13.7 161 104-280 39-265 (441)
28 cd06597 GH31_transferase_CtsY 99.0 1.8E-08 4E-13 101.7 17.2 170 97-279 13-262 (340)
29 cd06594 GH31_glucosidase_YihQ 99.0 7.8E-08 1.7E-12 96.3 20.9 160 106-278 21-245 (317)
30 cd06602 GH31_MGAM_SI_GAA This 99.0 9.5E-09 2.1E-13 103.7 13.8 159 105-279 21-230 (339)
31 cd06603 GH31_GANC_GANAB_alpha 98.9 9.9E-08 2.1E-12 96.3 20.0 162 102-279 18-248 (339)
32 COG1501 Alpha-glucosidases, fa 98.9 3.6E-08 7.7E-13 108.9 16.2 170 93-279 266-492 (772)
33 PLN02763 hydrolase, hydrolyzin 98.7 3.4E-07 7.4E-12 102.6 17.6 159 105-279 198-427 (978)
34 PRK10426 alpha-glucosidase; Pr 98.7 5.9E-07 1.3E-11 97.7 17.2 160 106-278 219-442 (635)
35 KOG1065 Maltase glucoamylase a 97.8 0.00012 2.6E-09 80.3 10.1 116 91-214 292-448 (805)
36 cd06596 GH31_CPE1046 CPE1046 i 96.8 0.0062 1.3E-07 59.4 9.0 177 105-327 42-223 (261)
37 TIGR01515 branching_enzym alph 94.5 0.26 5.7E-06 53.9 11.0 127 105-240 153-345 (613)
38 PF02638 DUF187: Glycosyl hydr 93.1 0.87 1.9E-05 45.7 10.9 102 106-214 17-164 (311)
39 PF13200 DUF4015: Putative gly 92.3 1.1 2.3E-05 45.3 10.2 101 106-217 11-150 (316)
40 smart00812 Alpha_L_fucos Alpha 91.7 2.6 5.6E-05 43.6 12.5 83 158-241 130-232 (384)
41 PF01120 Alpha_L_fucos: Alpha- 87.3 3.3 7.1E-05 42.1 9.2 84 158-242 140-243 (346)
42 PRK14706 glycogen branching en 86.1 4.5 9.7E-05 44.7 10.0 87 123-213 178-308 (639)
43 TIGR02402 trehalose_TreZ malto 86.0 7.1 0.00015 42.2 11.3 123 106-237 109-271 (542)
44 PRK10785 maltodextrin glucosid 84.7 8.8 0.00019 42.0 11.4 131 105-241 176-370 (598)
45 TIGR02104 pulA_typeI pullulana 83.5 5.3 0.00011 43.7 9.1 87 157-246 230-351 (605)
46 TIGR02456 treS_nterm trehalose 83.2 10 0.00023 40.8 11.1 128 105-239 25-235 (539)
47 PRK12568 glycogen branching en 83.1 11 0.00024 42.2 11.4 92 113-213 275-410 (730)
48 PF14488 DUF4434: Domain of un 81.8 4.5 9.7E-05 36.9 6.6 131 102-241 14-160 (166)
49 PRK05402 glycogen branching en 78.2 20 0.00043 40.2 11.5 101 107-213 264-406 (726)
50 PRK12313 glycogen branching en 78.1 20 0.00043 39.5 11.3 102 106-213 168-311 (633)
51 PRK06233 hypothetical protein; 77.6 11 0.00023 38.9 8.5 108 100-214 157-279 (372)
52 PRK14705 glycogen branching en 77.5 16 0.00035 43.3 10.8 93 112-213 770-906 (1224)
53 COG0296 GlgB 1,4-alpha-glucan 74.3 16 0.00035 40.2 9.2 100 106-214 163-306 (628)
54 cd02875 GH18_chitobiase Chitob 74.1 13 0.00028 38.0 8.0 83 159-243 67-157 (358)
55 PF01791 DeoC: DeoC/LacD famil 74.0 12 0.00026 35.7 7.3 83 158-242 114-200 (236)
56 TIGR02403 trehalose_treC alpha 73.5 38 0.00082 36.7 11.7 63 106-174 25-93 (543)
57 PLN02960 alpha-amylase 73.1 28 0.0006 39.9 10.7 103 106-214 414-559 (897)
58 PRK14510 putative bifunctional 71.0 24 0.00053 42.0 10.2 84 157-240 248-371 (1221)
59 cd03465 URO-D_like The URO-D _ 69.9 15 0.00033 36.3 7.3 92 123-241 178-269 (330)
60 PF05913 DUF871: Bacterial pro 69.3 6 0.00013 40.6 4.3 87 106-216 12-101 (357)
61 PF14871 GHL6: Hypothetical gl 67.3 51 0.0011 28.9 9.2 61 112-179 4-67 (132)
62 PF07302 AroM: AroM protein; 67.1 89 0.0019 30.0 11.4 122 105-242 67-209 (221)
63 COG1830 FbaB DhnA-type fructos 66.8 37 0.00081 33.5 8.9 76 158-241 132-208 (265)
64 PRK13398 3-deoxy-7-phosphohept 65.3 39 0.00085 33.2 9.0 105 105-243 38-142 (266)
65 PRK10933 trehalose-6-phosphate 65.2 53 0.0012 35.6 10.8 102 106-214 31-203 (551)
66 PLN00196 alpha-amylase; Provis 65.0 17 0.00038 38.1 6.8 112 94-214 32-206 (428)
67 KOG3340 Alpha-L-fucosidase [Ca 64.1 12 0.00026 38.1 5.0 55 158-213 152-219 (454)
68 cd02931 ER_like_FMN Enoate red 64.0 27 0.00059 36.0 7.9 107 103-212 138-273 (382)
69 PLN02361 alpha-amylase 61.8 59 0.0013 34.0 9.9 101 108-216 29-184 (401)
70 TIGR02102 pullulan_Gpos pullul 61.7 1.1E+02 0.0025 36.1 13.1 86 157-245 556-673 (1111)
71 PLN02447 1,4-alpha-glucan-bran 61.7 34 0.00074 38.6 8.6 97 111-213 254-392 (758)
72 PRK06852 aldolase; Validated 60.5 50 0.0011 33.2 8.8 80 158-241 156-236 (304)
73 PRK03705 glycogen debranching 60.3 91 0.002 34.7 11.6 61 157-217 243-342 (658)
74 COG1649 Uncharacterized protei 59.5 58 0.0013 34.3 9.3 137 104-244 60-272 (418)
75 PRK12595 bifunctional 3-deoxy- 59.1 69 0.0015 33.0 9.8 103 106-242 130-232 (360)
76 cd00465 URO-D_CIMS_like The UR 58.6 15 0.00032 36.0 4.7 89 123-240 154-247 (306)
77 cd02803 OYE_like_FMN_family Ol 57.9 1.1E+02 0.0024 30.3 10.9 105 103-214 129-251 (327)
78 PF07555 NAGidase: beta-N-acet 56.7 39 0.00085 34.0 7.3 102 101-215 7-115 (306)
79 cd00598 GH18_chitinase-like Th 56.0 66 0.0014 29.3 8.3 116 124-243 21-147 (210)
80 cd06545 GH18_3CO4_chitinase Th 55.9 22 0.00047 34.2 5.3 97 127-231 23-124 (253)
81 TIGR03569 NeuB_NnaB N-acetylne 55.3 26 0.00056 35.6 5.9 94 106-214 14-119 (329)
82 TIGR02103 pullul_strch alpha-1 55.2 50 0.0011 38.1 8.7 86 158-246 406-528 (898)
83 cd06522 GH25_AtlA-like AtlA is 54.9 54 0.0012 30.2 7.6 104 123-242 22-131 (192)
84 cd02871 GH18_chitinase_D-like 53.8 50 0.0011 32.9 7.6 87 157-243 61-154 (312)
85 TIGR01361 DAHP_synth_Bsub phos 52.4 55 0.0012 32.0 7.5 102 106-242 37-139 (260)
86 cd08577 PI-PLCc_GDPD_SF_unchar 51.2 33 0.00071 32.9 5.6 41 158-211 187-227 (228)
87 PF03102 NeuB: NeuB family; I 50.9 45 0.00097 32.4 6.5 62 158-241 58-119 (241)
88 PRK13397 3-deoxy-7-phosphohept 50.8 1.3E+02 0.0027 29.6 9.6 102 106-242 27-129 (250)
89 cd08607 GDPD_GDE5 Glycerophosp 49.9 27 0.00059 34.1 5.0 43 159-213 248-290 (290)
90 smart00642 Aamy Alpha-amylase 49.5 60 0.0013 29.4 6.8 64 107-176 18-90 (166)
91 KOG3111 D-ribulose-5-phosphate 49.4 19 0.00042 34.0 3.5 23 158-180 101-123 (224)
92 COG3669 Alpha-L-fucosidase [Ca 48.6 31 0.00068 35.9 5.2 21 158-178 103-123 (430)
93 PRK09722 allulose-6-phosphate 48.3 95 0.0021 29.9 8.3 76 158-242 97-197 (229)
94 cd02932 OYE_YqiM_FMN Old yello 48.1 92 0.002 31.3 8.6 102 103-211 142-261 (336)
95 cd08555 PI-PLCc_GDPD_SF Cataly 47.2 47 0.001 30.0 5.8 42 158-212 138-179 (179)
96 PF00128 Alpha-amylase: Alpha 46.9 25 0.00053 33.5 4.1 124 107-240 3-194 (316)
97 TIGR01463 mtaA_cmuA methyltran 46.9 38 0.00083 33.9 5.6 89 123-241 190-281 (340)
98 PLN02784 alpha-amylase 46.8 1.5E+02 0.0033 34.1 10.6 59 107-173 520-585 (894)
99 COG0407 HemE Uroporphyrinogen- 46.5 54 0.0012 33.7 6.6 86 123-237 199-285 (352)
100 cd04747 OYE_like_5_FMN Old yel 45.4 89 0.0019 32.1 8.0 105 103-211 132-255 (361)
101 TIGR02109 PQQ_syn_pqqE coenzym 45.2 1.5E+02 0.0033 29.8 9.7 81 103-214 35-115 (358)
102 PRK09441 cytoplasmic alpha-amy 44.9 68 0.0015 34.0 7.3 51 186-239 207-259 (479)
103 PRK05301 pyrroloquinoline quin 44.5 1.2E+02 0.0027 30.7 9.0 80 103-214 44-124 (378)
104 PLN02877 alpha-amylase/limit d 43.9 94 0.002 36.2 8.6 86 158-246 468-599 (970)
105 cd08564 GDPD_GsGDE_like Glycer 43.9 42 0.00091 32.4 5.2 45 159-213 213-257 (265)
106 cd06542 GH18_EndoS-like Endo-b 43.7 40 0.00087 32.2 5.0 87 157-243 52-151 (255)
107 cd01948 EAL EAL domain. This d 42.7 53 0.0012 30.2 5.5 74 157-243 133-210 (240)
108 PF00834 Ribul_P_3_epim: Ribul 42.6 42 0.00092 31.5 4.8 23 158-180 94-116 (201)
109 TIGR02401 trehalose_TreY malto 42.5 85 0.0019 35.9 7.9 70 103-178 11-87 (825)
110 PRK08227 autoinducer 2 aldolas 42.4 1.1E+02 0.0023 30.2 7.8 71 158-242 129-199 (264)
111 PRK13523 NADPH dehydrogenase N 42.3 1E+02 0.0022 31.3 7.8 101 105-210 132-246 (337)
112 cd08575 GDPD_GDE4_like Glycero 41.9 46 0.001 32.3 5.1 41 159-213 221-261 (264)
113 PRK09936 hypothetical protein; 41.6 50 0.0011 33.1 5.2 62 103-181 33-99 (296)
114 cd06416 GH25_Lys1-like Lys-1 i 41.5 1.1E+02 0.0024 28.0 7.4 102 123-240 19-128 (196)
115 cd08605 GDPD_GDE5_like_1_plant 41.2 39 0.00085 32.9 4.5 42 159-212 240-281 (282)
116 PLN02803 beta-amylase 41.1 41 0.00089 36.3 4.8 58 105-173 104-161 (548)
117 PLN02801 beta-amylase 41.1 42 0.00091 36.0 4.9 58 105-173 34-91 (517)
118 COG2200 Rtn c-di-GMP phosphodi 40.9 74 0.0016 30.7 6.4 73 158-243 138-214 (256)
119 PRK08091 ribulose-phosphate 3- 40.4 1.6E+02 0.0035 28.3 8.5 76 158-242 105-207 (228)
120 PRK14511 maltooligosyl trehalo 40.4 96 0.0021 35.7 7.9 71 102-178 14-91 (879)
121 cd02930 DCR_FMN 2,4-dienoyl-Co 40.2 1.1E+02 0.0024 30.9 7.8 102 103-211 125-244 (353)
122 cd08580 GDPD_Rv2277c_like Glyc 40.0 56 0.0012 32.0 5.4 41 159-213 219-260 (263)
123 PRK10605 N-ethylmaleimide redu 39.3 1.3E+02 0.0029 30.8 8.2 106 103-212 147-270 (362)
124 smart00052 EAL Putative diguan 39.1 74 0.0016 29.2 5.9 71 158-241 135-209 (241)
125 PLN00197 beta-amylase; Provisi 38.6 49 0.0011 35.9 5.0 58 105-173 124-181 (573)
126 PRK12858 tagatose 1,6-diphosph 38.3 1.8E+02 0.0039 29.7 8.9 83 158-241 145-247 (340)
127 PRK08673 3-deoxy-7-phosphohept 38.1 1.7E+02 0.0036 29.9 8.6 107 103-243 101-208 (335)
128 cd08601 GDPD_SaGlpQ_like Glyce 37.9 73 0.0016 30.5 5.8 41 159-213 208-248 (256)
129 PLN02161 beta-amylase 37.6 51 0.0011 35.5 4.8 57 106-173 115-171 (531)
130 PF02449 Glyco_hydro_42: Beta- 37.5 24 0.00053 35.9 2.5 60 105-177 7-68 (374)
131 PRK13361 molybdenum cofactor b 37.4 2.7E+02 0.0058 27.9 9.9 75 104-210 44-120 (329)
132 cd08583 PI-PLCc_GDPD_SF_unchar 37.1 71 0.0015 30.2 5.5 42 159-214 195-236 (237)
133 TIGR03128 RuMP_HxlA 3-hexulose 36.6 1.9E+02 0.0041 26.4 8.2 61 123-212 73-134 (206)
134 PF08924 DUF1906: Domain of un 36.5 64 0.0014 28.4 4.7 56 111-175 80-135 (136)
135 PRK09250 fructose-bisphosphate 36.3 1.7E+02 0.0037 30.1 8.3 57 158-215 181-241 (348)
136 PLN03244 alpha-amylase; Provis 36.3 46 0.001 37.8 4.5 59 155-213 440-533 (872)
137 cd04734 OYE_like_3_FMN Old yel 36.3 1.2E+02 0.0026 30.8 7.2 102 104-208 130-246 (343)
138 PLN02705 beta-amylase 36.2 53 0.0011 36.1 4.8 58 105-173 265-322 (681)
139 PRK08745 ribulose-phosphate 3- 36.1 2.1E+02 0.0044 27.4 8.4 76 158-242 99-199 (223)
140 KOG1066 Glucosidase II catalyt 35.9 61 0.0013 36.4 5.2 67 105-179 369-435 (915)
141 PF00563 EAL: EAL domain; Int 35.7 1.1E+02 0.0023 28.0 6.4 70 158-241 136-209 (236)
142 PRK13396 3-deoxy-7-phosphohept 35.6 2.2E+02 0.0049 29.2 9.1 103 105-242 112-215 (352)
143 cd02874 GH18_CFLE_spore_hydrol 34.9 1.1E+02 0.0024 30.1 6.7 83 158-243 47-143 (313)
144 cd03311 CIMS_C_terminal_like C 34.8 1.3E+02 0.0028 30.0 7.2 101 107-215 147-252 (332)
145 PRK09454 ugpQ cytoplasmic glyc 34.3 69 0.0015 30.6 5.0 42 159-214 199-240 (249)
146 cd03310 CIMS_like CIMS - Cobal 34.3 3E+02 0.0065 27.0 9.7 74 121-216 159-233 (321)
147 cd08556 GDPD Glycerophosphodie 34.2 88 0.0019 27.7 5.4 40 159-212 150-189 (189)
148 cd08563 GDPD_TtGDE_like Glycer 34.2 64 0.0014 30.3 4.7 40 159-212 190-229 (230)
149 cd08581 GDPD_like_1 Glyceropho 33.8 64 0.0014 30.6 4.6 38 161-212 191-228 (229)
150 cd08582 GDPD_like_2 Glyceropho 33.6 69 0.0015 30.1 4.8 41 159-213 191-231 (233)
151 cd06547 GH85_ENGase Endo-beta- 33.3 78 0.0017 32.3 5.3 75 159-233 49-133 (339)
152 cd04735 OYE_like_4_FMN Old yel 33.1 1.5E+02 0.0034 30.0 7.5 103 103-213 132-257 (353)
153 cd08579 GDPD_memb_like Glycero 32.8 67 0.0015 29.9 4.5 40 159-212 180-219 (220)
154 cd08604 GDPD_SHV3_repeat_2 Gly 32.6 1.2E+02 0.0025 30.2 6.4 54 159-214 240-295 (300)
155 PLN02905 beta-amylase 32.5 65 0.0014 35.6 4.8 58 105-173 283-340 (702)
156 cd08612 GDPD_GDE4 Glycerophosp 32.1 74 0.0016 31.5 4.9 41 159-213 251-291 (300)
157 TIGR02100 glgX_debranch glycog 32.0 96 0.0021 34.7 6.2 77 157-233 246-365 (688)
158 cd06543 GH18_PF-ChiA-like PF-C 31.1 3.2E+02 0.0069 27.2 9.2 87 157-243 55-145 (294)
159 COG3867 Arabinogalactan endo-1 30.9 91 0.002 31.6 5.1 114 123-243 73-221 (403)
160 cd08562 GDPD_EcUgpQ_like Glyce 30.6 94 0.002 28.9 5.1 40 159-212 189-228 (229)
161 cd02801 DUS_like_FMN Dihydrour 30.6 4.4E+02 0.0094 24.3 9.7 92 106-212 65-159 (231)
162 cd08561 GDPD_cytoplasmic_ScUgp 30.5 91 0.002 29.6 5.1 41 159-213 202-242 (249)
163 COG1856 Uncharacterized homolo 30.4 2.9E+02 0.0064 26.9 8.2 108 104-240 38-154 (275)
164 PRK08508 biotin synthase; Prov 30.0 1.8E+02 0.0039 28.4 7.2 80 105-212 40-120 (279)
165 cd08572 GDPD_GDE5_like Glycero 29.6 80 0.0017 31.2 4.7 42 159-212 251-292 (293)
166 cd02933 OYE_like_FMN Old yello 29.6 6E+02 0.013 25.7 12.3 106 103-212 140-262 (338)
167 cd08574 GDPD_GDE_2_3_6 Glycero 29.6 86 0.0019 30.2 4.8 39 159-211 213-251 (252)
168 PRK12677 xylose isomerase; Pro 29.5 38 0.00082 35.1 2.4 62 108-174 114-177 (384)
169 KOG3420 Predicted RNA methylas 29.4 78 0.0017 28.9 4.0 68 318-400 66-134 (185)
170 PRK06769 hypothetical protein; 29.4 95 0.0021 27.9 4.8 24 153-177 29-52 (173)
171 TIGR03586 PseI pseudaminic aci 29.2 1.8E+02 0.004 29.5 7.2 63 158-242 79-141 (327)
172 cd08567 GDPD_SpGDE_like Glycer 28.9 94 0.002 29.5 4.9 41 159-213 221-261 (263)
173 PRK11059 regulatory protein Cs 28.9 85 0.0018 34.4 5.1 72 157-241 534-609 (640)
174 TIGR01668 YqeG_hyp_ppase HAD s 28.8 1E+02 0.0022 27.7 4.8 44 124-177 22-67 (170)
175 KOG2672 Lipoate synthase [Coen 28.8 69 0.0015 32.1 3.9 58 185-243 134-195 (360)
176 PRK01060 endonuclease IV; Prov 28.4 4.7E+02 0.01 24.9 9.8 121 110-243 14-147 (281)
177 PRK12677 xylose isomerase; Pro 28.2 4.4E+02 0.0095 27.3 9.9 106 93-210 15-133 (384)
178 PRK14042 pyruvate carboxylase 27.7 4E+02 0.0087 29.5 9.9 55 104-177 150-205 (596)
179 PRK12330 oxaloacetate decarbox 27.3 4.7E+02 0.01 28.3 10.2 55 104-177 151-208 (499)
180 cd08610 GDPD_GDE6 Glycerophosp 27.3 1E+02 0.0022 31.1 5.0 42 159-214 235-276 (316)
181 PRK14041 oxaloacetate decarbox 27.2 5E+02 0.011 27.7 10.3 55 104-177 149-204 (467)
182 cd08606 GDPD_YPL110cp_fungi Gl 27.2 1.1E+02 0.0023 29.9 5.0 43 159-213 235-277 (286)
183 TIGR01748 rhaA L-rhamnose isom 27.1 1.5E+02 0.0034 30.9 6.2 63 105-178 66-129 (414)
184 PRK09121 5-methyltetrahydropte 27.0 1E+02 0.0022 31.3 5.0 105 97-214 139-254 (339)
185 PRK08195 4-hyroxy-2-oxovalerat 26.6 6.8E+02 0.015 25.3 11.7 120 102-250 19-143 (337)
186 PF09863 DUF2090: Uncharacteri 26.3 1.4E+02 0.003 30.2 5.5 129 190-332 124-271 (311)
187 TIGR02668 moaA_archaeal probab 26.2 4.1E+02 0.009 25.8 9.1 78 103-212 38-116 (302)
188 cd06414 GH25_LytC-like The Lyt 26.2 2.3E+02 0.005 25.9 6.8 103 122-240 18-131 (191)
189 PRK14507 putative bifunctional 26.2 2E+02 0.0043 35.7 7.8 72 102-178 752-829 (1693)
190 PRK13561 putative diguanylate 26.1 86 0.0019 34.2 4.5 50 157-216 535-584 (651)
191 cd00019 AP2Ec AP endonuclease 25.9 4.9E+02 0.011 24.9 9.4 126 108-246 10-147 (279)
192 cd08609 GDPD_GDE3 Glycerophosp 25.8 1.1E+02 0.0023 30.9 4.8 41 159-213 235-275 (315)
193 cd03174 DRE_TIM_metallolyase D 25.5 3.7E+02 0.008 25.3 8.4 50 157-210 116-165 (265)
194 PLN02455 fructose-bisphosphate 25.3 1.2E+02 0.0027 31.0 5.1 57 159-215 87-148 (358)
195 TIGR00542 hxl6Piso_put hexulos 25.2 5.3E+02 0.011 24.7 9.5 106 89-210 1-113 (279)
196 PRK06252 methylcobalamin:coenz 25.1 92 0.002 31.1 4.2 90 123-241 190-279 (339)
197 PF01373 Glyco_hydro_14: Glyco 25.0 54 0.0012 34.3 2.5 55 109-174 17-71 (402)
198 PF13204 DUF4038: Protein of u 24.9 43 0.00093 33.2 1.7 144 92-246 15-188 (289)
199 cd08573 GDPD_GDE1 Glycerophosp 24.8 1.2E+02 0.0027 29.2 4.9 39 159-212 218-257 (258)
200 PLN02389 biotin synthase 24.3 3.5E+02 0.0076 28.0 8.4 82 104-213 115-197 (379)
201 cd08560 GDPD_EcGlpQ_like_1 Gly 24.2 2E+02 0.0043 29.6 6.5 58 158-215 280-349 (356)
202 cd06416 GH25_Lys1-like Lys-1 i 24.0 1E+02 0.0022 28.3 4.0 24 157-180 111-134 (196)
203 cd08559 GDPD_periplasmic_GlpQ_ 23.5 1.5E+02 0.0032 29.3 5.2 49 159-212 246-295 (296)
204 PRK06256 biotin synthase; Vali 23.2 2E+02 0.0044 28.7 6.3 79 104-210 90-168 (336)
205 cd07945 DRE_TIM_CMS Leptospira 23.1 4.8E+02 0.01 25.7 8.8 79 158-242 117-196 (280)
206 COG0036 Rpe Pentose-5-phosphat 23.0 1.2E+02 0.0025 29.3 4.2 30 150-180 91-120 (220)
207 cd06415 GH25_Cpl1-like Cpl-1 l 22.6 6E+02 0.013 23.3 9.0 104 123-241 18-128 (196)
208 cd06522 GH25_AtlA-like AtlA is 22.6 91 0.002 28.7 3.4 63 105-179 67-133 (192)
209 COG1306 Uncharacterized conser 22.5 4.7E+02 0.01 26.7 8.3 98 108-216 77-221 (400)
210 PRK09856 fructoselysine 3-epim 22.4 4.9E+02 0.011 24.7 8.6 110 110-233 15-133 (275)
211 PLN02425 probable fructose-bis 22.3 1.6E+02 0.0034 30.6 5.2 58 159-216 122-184 (390)
212 cd06546 GH18_CTS3_chitinase GH 22.3 5.3E+02 0.012 24.9 8.8 82 158-242 61-148 (256)
213 cd02879 GH18_plant_chitinase_c 22.2 93 0.002 30.8 3.6 86 158-243 53-156 (299)
214 TIGR01108 oadA oxaloacetate de 21.9 5.7E+02 0.012 28.1 9.8 54 105-177 146-200 (582)
215 cd08570 GDPD_YPL206cp_fungi Gl 21.7 1.8E+02 0.0038 27.4 5.2 40 159-212 194-233 (234)
216 PRK07226 fructose-bisphosphate 21.7 6.2E+02 0.013 24.5 9.2 72 158-241 128-202 (267)
217 smart00518 AP2Ec AP endonuclea 21.4 6.9E+02 0.015 23.6 9.4 120 110-243 12-141 (273)
218 TIGR00433 bioB biotin syntheta 21.3 2.8E+02 0.006 26.9 6.7 81 105-213 62-142 (296)
219 PRK06520 5-methyltetrahydropte 21.0 2.6E+02 0.0057 28.7 6.7 114 98-214 154-278 (368)
220 PRK13210 putative L-xylulose 5 21.0 4E+02 0.0087 25.3 7.7 88 110-210 18-113 (284)
221 PF13199 Glyco_hydro_66: Glyco 21.0 8.7E+02 0.019 26.7 10.8 223 87-330 99-392 (559)
222 cd00958 DhnA Class I fructose- 21.0 6.4E+02 0.014 23.5 8.9 75 158-241 111-185 (235)
223 COG2894 MinD Septum formation 21.0 97 0.0021 30.2 3.2 27 103-134 95-121 (272)
224 PRK09505 malS alpha-amylase; R 20.9 2.7E+02 0.0058 31.3 7.1 64 105-173 227-309 (683)
225 cd07943 DRE_TIM_HOA 4-hydroxy- 20.8 6E+02 0.013 24.4 8.9 48 157-210 113-160 (263)
226 PLN02227 fructose-bisphosphate 20.7 1.7E+02 0.0037 30.4 5.0 58 159-216 131-193 (399)
227 cd07941 DRE_TIM_LeuA3 Desulfob 20.6 5.4E+02 0.012 25.0 8.5 49 158-209 121-169 (273)
228 cd00945 Aldolase_Class_I Class 20.4 4.5E+02 0.0098 23.1 7.5 85 107-213 64-151 (201)
229 cd02930 DCR_FMN 2,4-dienoyl-Co 20.2 2.9E+02 0.0064 27.9 6.8 66 104-175 30-96 (353)
230 COG3280 TreY Maltooligosyl tre 20.2 3E+02 0.0065 31.4 7.1 71 103-178 14-90 (889)
231 PRK12331 oxaloacetate decarbox 20.1 8E+02 0.017 26.0 10.2 100 105-237 151-255 (448)
232 cd06523 GH25_PlyB-like PlyB is 20.1 3.6E+02 0.0079 24.3 6.8 100 124-241 20-122 (177)
No 1
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=6.8e-98 Score=757.24 Aligned_cols=361 Identities=77% Similarity=1.275 Sum_probs=329.5
Q ss_pred eeeeeeeccccccccccccccCCceecccccchhHhhhhhhhhccccchhccCCCCCCCceEEechhhcCCCCCHHHHHH
Q 015338 33 ALVLSLIIDVGFAGRVVVPLLQSYEKASYSRGFSRNFGKIFDTSNYGILQLNNGLASTPQMGWNSWNFFACNISETIIKE 112 (408)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~pP~GwnSW~~~~~~i~e~~i~~ 112 (408)
.|+++++.|...+.+.......+. .++.+-..+....+....++|+++++||||||||+.|+|+|||+.|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ngla~tPpmGWnSWn~~~~~i~E~~i~~ 84 (427)
T PLN02229 13 LLSLSVLVSQSIAGRVKAPLLQSV--------FSKSFNSIYDTSMYGRLQLNNGLARTPQMGWNSWNFFACNINETVIKE 84 (427)
T ss_pred HHHHHhhcchhhhhhhcccccccc--------chhhhhhhhhhhhhhhhhccCCccCCCCceEEchhhhCcccCHHHHHH
Confidence 334444566666666655444443 234444555555556677789999999999999999999999999999
Q ss_pred HHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhh
Q 015338 113 TADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFH 192 (408)
Q Consensus 113 ~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~ 192 (408)
+||+|++.||+++||+||+|||||+...||++|+|+||++|||+|||+|+||||++|||||||.++|+.||..+||+++|
T Consensus 85 ~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~ 164 (427)
T PLN02229 85 TADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFH 164 (427)
T ss_pred HHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCCCCCCccH
Confidence 99999999999999999999999998789999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChH
Q 015338 193 EKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWA 272 (408)
Q Consensus 193 ~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~ 272 (408)
+++++++|++|||||||+|+|+.....+.++|..|++||+++||||+||+|+||...|+.|..+++|+||+++||.+.|+
T Consensus 165 e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~ 244 (427)
T PLN02229 165 EVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWA 244 (427)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCcccccc
Confidence 99999999999999999999988777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHHHHHHHHhcCceeeecCCCCCCHHHHHhhccHhhHhhhc
Q 015338 273 SMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQ 352 (408)
Q Consensus 273 ~~~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwai~gsPL~ig~Dl~~l~~~~l~lL~N~eviainQ 352 (408)
++..+++.+..|+.+++||+|||||||+||+++||.+|+||||+||||++|||++|+||++|+++.++||+|+|||||||
T Consensus 245 sv~~i~~~~~~~~~~agPG~wnDpDML~vGn~glT~~E~rthfsLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQ 324 (427)
T PLN02229 245 SMTTIADLNNKWAAYAGPGGWNDPDMLEVGNGGMTYEEYRGHFSIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQ 324 (427)
T ss_pred cHHHHHHHHHHHHhhcCCCCCCCCCeeeeCCCCCCHHHHHHHHHHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccEEeeecCCCCeEEEEE--EcCCcEEEEEEcccCCceeeeeeech
Q 015338 353 DPLGVQGRKVYVSGTDNCLQVFL--ISSYRILGLCCCPKFGIIFESFQFKC 401 (408)
Q Consensus 353 D~lG~~~~~v~~~~~~~~~~vw~--l~~g~~aValfN~~~~~~~~~~~~~~ 401 (408)
|+||+|+++|...+.+++.+||+ |++|++||+|||+.....+.+++|++
T Consensus 325 D~lG~qg~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~~ 375 (427)
T PLN02229 325 DPLGVQGRKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSEPATITASWDV 375 (427)
T ss_pred cccccCcEEEEecCCCCceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHHH
Confidence 99999999998765445689999 99999999999999888888888774
No 2
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=3.4e-94 Score=725.42 Aligned_cols=318 Identities=66% Similarity=1.136 Sum_probs=305.6
Q ss_pred hhccCCCCCCCceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHH
Q 015338 81 LQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKA 160 (408)
Q Consensus 81 ~~~~~g~~~~pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~ 160 (408)
..++||++++||||||||+.|+|+|||+.|+++||+|++.||+++||+||+|||||+...||++|+|+||++|||+||++
T Consensus 22 ~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~ 101 (386)
T PLN02808 22 NLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKA 101 (386)
T ss_pred hcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHH
Confidence 45579999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHcCCeEEEEeeCCccccC-CCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCce
Q 015338 161 LADYVHGKGLKLGIYSDAGVFTCQ-VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIF 239 (408)
Q Consensus 161 l~~~ih~~G~k~Glw~~pg~~~c~-~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~ 239 (408)
|++|||++|||||||.++|..+|. .+||+++|+++++++|++|||||||+|+|+.....+.++|..|++||+++||||+
T Consensus 102 lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~ 181 (386)
T PLN02808 102 LADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIF 181 (386)
T ss_pred HHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeE
Confidence 999999999999999999999995 4899999999999999999999999999988776778899999999999999999
Q ss_pred EeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHHHHHHH
Q 015338 240 YSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWA 319 (408)
Q Consensus 240 ~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwa 319 (408)
||+|+||..+|+.|+.+++|+||++.||.+.|.++..+++.+..++.+++||+|||||||+||++++|.+|+|+||+|||
T Consensus 182 ~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~~agPG~wnDpDML~vGn~glt~~E~rthfsLWa 261 (386)
T PLN02808 182 FSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDRWASYARPGGWNDPDMLEVGNGGMTTEEYRSHFSIWA 261 (386)
T ss_pred EEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhhhHhhcCCCCCCCCCeeeECCCCCCHHHHHHHHHHHH
Confidence 99999999899999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HhcCceeeecCCCCCCHHHHHhhccHhhHhhhcCCCCcccEEeeecCCCCeEEEEE--EcCCcEEEEEEcccCCceeeee
Q 015338 320 LMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVYVSGTDNCLQVFL--ISSYRILGLCCCPKFGIIFESF 397 (408)
Q Consensus 320 i~gsPL~ig~Dl~~l~~~~l~lL~N~eviainQD~lG~~~~~v~~~~~~~~~~vw~--l~~g~~aValfN~~~~~~~~~~ 397 (408)
|++|||+||+||++|+++.++||+|+||||||||+||+++++|...++ .+||+ |++|++||+|||+.....+.++
T Consensus 262 m~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~~v~~~~~---~~vW~k~L~~g~~aVal~N~~~~~~~~~~ 338 (386)
T PLN02808 262 LAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKKDGD---LEVWAGPLSKKRVAVVLWNRGSSRATITA 338 (386)
T ss_pred HHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcEEEEecCC---eEEEEEECCCCCEEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999999999987655 99999 9999999999999988888888
Q ss_pred eech
Q 015338 398 QFKC 401 (408)
Q Consensus 398 ~~~~ 401 (408)
+|++
T Consensus 339 ~~~~ 342 (386)
T PLN02808 339 RWSD 342 (386)
T ss_pred EHHH
Confidence 8863
No 3
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=4.2e-94 Score=726.75 Aligned_cols=319 Identities=64% Similarity=1.074 Sum_probs=304.8
Q ss_pred cchhccCCCCCCCceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCH
Q 015338 79 GILQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGI 158 (408)
Q Consensus 79 ~~~~~~~g~~~~pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl 158 (408)
....+.||++++||||||||+.|+|+|||+.++++||+|++.||+++||+||+|||||+...||++|+|+||++|||+||
T Consensus 44 ~~~~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~ 123 (412)
T PLN02692 44 RRNLLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGI 123 (412)
T ss_pred hhhcccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcH
Confidence 34556799999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccC-CCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQ-VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~-~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~ 237 (408)
|+|+||||++|||||||.++|..||. ++||+++|+++++++|++|||||||+|+|+.....+.++|..|++||+++|||
T Consensus 124 k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRp 203 (412)
T PLN02692 124 KALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRP 203 (412)
T ss_pred HHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999995 58999999999999999999999999999877666778999999999999999
Q ss_pred ceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHHHHH
Q 015338 238 IFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSI 317 (408)
Q Consensus 238 i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~sl 317 (408)
|+||+|+||...|+.|..+++|+||++.|+.+.|.++..+++.+..++.+++||+|||||||+||++++|.+|+|+||+|
T Consensus 204 I~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~~agPG~wnDpDML~VGn~glT~~E~rThfsL 283 (412)
T PLN02692 204 IFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNEVYAELARPGGWNDPDMLEVGNGGMTKDEYIVHFSI 283 (412)
T ss_pred eEEEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHHHHhhccCCCCCCCCCeEeECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred HHHhcCceeeecCCCCCCHHHHHhhccHhhHhhhcCCCCcccEEeeecCCCCeEEEEE--EcCCcEEEEEEcccCCceee
Q 015338 318 WALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVYVSGTDNCLQVFL--ISSYRILGLCCCPKFGIIFE 395 (408)
Q Consensus 318 wai~gsPL~ig~Dl~~l~~~~l~lL~N~eviainQD~lG~~~~~v~~~~~~~~~~vw~--l~~g~~aValfN~~~~~~~~ 395 (408)
|||++|||++|+||++++++.++||+|+||||||||+||+|+++|...++ .|||+ |++|++||+|||+.....+.
T Consensus 284 Wai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~~v~~~~~---~~vW~k~l~~g~~aVal~N~~~~~~~i 360 (412)
T PLN02692 284 WAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAKKVRMEGD---LEIWAGPLSGYRVALLLLNRGPWRNSI 360 (412)
T ss_pred HHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcEEEEecCC---eEEEEEECCCCCEEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999987655 99999 99999999999998777777
Q ss_pred eeeec
Q 015338 396 SFQFK 400 (408)
Q Consensus 396 ~~~~~ 400 (408)
+++|+
T Consensus 361 ~~~~~ 365 (412)
T PLN02692 361 TANWD 365 (412)
T ss_pred EEeHH
Confidence 77765
No 4
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-82 Score=619.94 Aligned_cols=325 Identities=57% Similarity=0.975 Sum_probs=303.7
Q ss_pred hhhhccccchhccCCCCCCCceEEechhhcCCCCC----------HHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCC
Q 015338 72 IFDTSNYGILQLNNGLASTPQMGWNSWNFFACNIS----------ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR 141 (408)
Q Consensus 72 ~~~~~~~~~~~~~~g~~~~pP~GwnSW~~~~~~i~----------e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~r 141 (408)
++-......+.++||++++|||||+||+.|.|+++ |..++++||+|++.|++++||+||+|||||....|
T Consensus 14 ~v~~~~~~~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~R 93 (414)
T KOG2366|consen 14 LVMDSVKGRMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVTR 93 (414)
T ss_pred HHHHhhhhheeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhcc
Confidence 33333334678999999999999999999999887 99999999999999999999999999999999899
Q ss_pred CCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcc
Q 015338 142 DLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPK 221 (408)
Q Consensus 142 d~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~ 221 (408)
|.+|++.+|+++||+|++.|++|+|++|+|||||.+.|..||.++||++.|++.++++|++|||||+|+|.|+.....+.
T Consensus 94 d~~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PGS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~ 173 (414)
T KOG2366|consen 94 DSDGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGYPGSLGHEESDAKTFADWGVDYLKLDGCFNNLITMP 173 (414)
T ss_pred CCccccccChhhcccchhhhhhchhhcCCceeeeeccCchhhccCCcccchhhhhhhhhHhhCCcEEecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred cccHHHHHHHHhcCCCceEeeCCCCCCChhhh-------hhhccceeeecCCCCCChHHHHHHHH----hhcccccccCC
Q 015338 222 KRYPPMRDALNETGCSIFYSLCEWGVDDPALW-------AGKVGNSWRTTGDINDTWASMTSIAD----INDKWASYAGP 290 (408)
Q Consensus 222 ~~Y~~m~~AL~~~Gr~i~~s~c~~g~~~p~~w-------~~~~~n~wRis~Di~~~W~~~~~~~~----~~~~~~~~~gp 290 (408)
++|..|++||+++||||++|+|+||.+.++.| ...++|+||+.+|+.++|.++..+++ .+..+..++||
T Consensus 174 ~~Yp~ms~aLN~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd~~~~~agP 253 (414)
T KOG2366|consen 174 EGYPIMSRALNNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQDRIAPLAGP 253 (414)
T ss_pred ccchhHHHHHhccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhhhhccccCC
Confidence 99999999999999999999999999888877 56889999999999999999999988 57788899999
Q ss_pred CCcCCCCccccCCCCCChhhhHHHHHHHHHhcCceeeecCCCCCCHHHHHhhccHhhHhhhcCCCCcccEEeeecCCCCe
Q 015338 291 GGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVYVSGTDNC 370 (408)
Q Consensus 291 g~wnDpDmL~vg~~~lT~~E~rt~~slwai~gsPL~ig~Dl~~l~~~~l~lL~N~eviainQD~lG~~~~~v~~~~~~~~ 370 (408)
|+|||||||++||.++|.+|+++||++||++++||++|+|++.++++.+++|+|||+|+||||+||.|++++...+++
T Consensus 254 g~WNDpDmL~iGN~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiqGr~i~~e~~~-- 331 (414)
T KOG2366|consen 254 GGWNDPDMLEIGNGGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQGRKIVLEGDS-- 331 (414)
T ss_pred CCCCChhHhhcCCCCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchhheeeeecCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854433
Q ss_pred EEEEE--EcCCcEEEEEEcccCCceeeeee
Q 015338 371 LQVFL--ISSYRILGLCCCPKFGIIFESFQ 398 (408)
Q Consensus 371 ~~vw~--l~~g~~aValfN~~~~~~~~~~~ 398 (408)
.+||+ +++.++||+++|+........|.
T Consensus 332 ievw~~pls~~~~Ava~lNr~~~~~~~~It 361 (414)
T KOG2366|consen 332 IEVWSGPLSGKSVAVAFLNRRKTGIPARIT 361 (414)
T ss_pred eEEEeeccCCceEEEEEecccCCCCCcccc
Confidence 99999 99999999999998655444443
No 5
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=6.3e-79 Score=608.48 Aligned_cols=265 Identities=34% Similarity=0.561 Sum_probs=236.5
Q ss_pred CceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCC----------------CCCCCCCeeecCCCC
Q 015338 91 PQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSP----------------LRDLKGQLVPDTITF 154 (408)
Q Consensus 91 pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~----------------~rd~~G~~~~d~~~F 154 (408)
||||||||+.|.|+|||+.|+++|| ++++||+++||+||+|||||+.. .||.+|+++||++||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rF 79 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRW 79 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccC
Confidence 8999999999999999999999999 78999999999999999999863 268899999999999
Q ss_pred CC-----CHHHHHHHHHHcCCeEEEEeeCCccccC--------CC----------------------------------c
Q 015338 155 PS-----GIKALADYVHGKGLKLGIYSDAGVFTCQ--------VR----------------------------------P 187 (408)
Q Consensus 155 P~-----Glk~l~~~ih~~G~k~Glw~~pg~~~c~--------~~----------------------------------P 187 (408)
|+ |||+|+||||+||||||||..+|+.+|. +. |
T Consensus 80 Ps~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~ 159 (357)
T PLN03231 80 PSTTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSE 159 (357)
T ss_pred CCCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccch
Confidence 99 9999999999999999999999988884 33 4
Q ss_pred cchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeCCCCCCChhhhh---hhccceeeec
Q 015338 188 GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWA---GKVGNSWRTT 264 (408)
Q Consensus 188 gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c~~g~~~p~~w~---~~~~n~wRis 264 (408)
|+++|+++++++|++|||||||+|.|+.......++|..|++||+++||||+||+|++. ..+..|. .+++|+||++
T Consensus 160 gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~g~-~~~~~~~~~i~~~an~WR~s 238 (357)
T PLN03231 160 GGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGD-GATPGLAARVAQLVNMYRVT 238 (357)
T ss_pred hHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecCCC-CCCchhhhhhhhhcCccccc
Confidence 45567888999999999999999999765555668899999999999999999999743 3333443 4678999999
Q ss_pred CCCCCChHHHHHHHHhhcccc--------cccCCCCcCCCCccccC-------------CCCCChhhhHHHHHHHHHhcC
Q 015338 265 GDINDTWASMTSIADINDKWA--------SYAGPGGWNDPDMLEVG-------------NGGMSYQEYRAHFSIWALMKA 323 (408)
Q Consensus 265 ~Di~~~W~~~~~~~~~~~~~~--------~~~gpg~wnDpDmL~vg-------------~~~lT~~E~rt~~slwai~gs 323 (408)
.||++.|.++..+++....++ .+++||+|||||||+|| +.+||.+|+|||||||||++|
T Consensus 239 ~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam~~S 318 (357)
T PLN03231 239 GDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAVAKS 318 (357)
T ss_pred CCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHHHhC
Confidence 999999999988887643332 36789999999999999 347999999999999999999
Q ss_pred ceeeecCCCCCCHHHHHhhccHhhHhhhcCCCCc
Q 015338 324 PLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGV 357 (408)
Q Consensus 324 PL~ig~Dl~~l~~~~l~lL~N~eviainQD~lG~ 357 (408)
||++|+||++|+++.++||+|+||||||||+||.
T Consensus 319 PLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~ 352 (357)
T PLN03231 319 PLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGN 352 (357)
T ss_pred chhhcCCcccCCHHHHHHhcChHHheecCCcccc
Confidence 9999999999999999999999999999999985
No 6
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=4.4e-73 Score=589.66 Aligned_cols=278 Identities=29% Similarity=0.475 Sum_probs=240.2
Q ss_pred chhccCCCCCCCceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCC-------------CCCCCC
Q 015338 80 ILQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL-------------RDLKGQ 146 (408)
Q Consensus 80 ~~~~~~g~~~~pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~-------------rd~~G~ 146 (408)
..+.+++++++||||||||+.|.++|||+.++++||. +++||+++||+||+|||||+... ||.+|+
T Consensus 20 ~~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~-vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~Gr 98 (633)
T PLN02899 20 GASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEI-VSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGR 98 (633)
T ss_pred cccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHH-HHcchHhhCCeEEEEccccccccccccccccccccccCCCCC
Confidence 4456788999999999999999999999999999995 68899999999999999998642 578899
Q ss_pred eeecCCCCCC-----CHHHHHHHHHHcCCeEEEEeeCCccccC-------------------------------------
Q 015338 147 LVPDTITFPS-----GIKALADYVHGKGLKLGIYSDAGVFTCQ------------------------------------- 184 (408)
Q Consensus 147 ~~~d~~~FP~-----Glk~l~~~ih~~G~k~Glw~~pg~~~c~------------------------------------- 184 (408)
++||++|||+ |||+|+||||++|||||||.++|..+|.
T Consensus 99 LvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w 178 (633)
T PLN02899 99 PIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAW 178 (633)
T ss_pred CccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhcccccccccc
Confidence 9999999998 9999999999999999999999965541
Q ss_pred ----------CCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeCCCCCCChhhhh
Q 015338 185 ----------VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWA 254 (408)
Q Consensus 185 ----------~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c~~g~~~p~~w~ 254 (408)
+.||.++|++.++++|++|||||||+|.|+... ...+.|..|++||+++||||+||+|+ |...+..|+
T Consensus 179 ~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~-~~~~ey~~ms~AL~aTGRPIvySLsp-G~~~~p~wa 256 (633)
T PLN02899 179 MSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDD-FDLEEITYVSEVLKELDRPIVYSLSP-GTSATPTMA 256 (633)
T ss_pred CCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCC-CChHHHHHHHHHHHHhCCCeEEEecC-Ccccchhhh
Confidence 124557788888999999999999999987533 23467999999999999999999997 444444554
Q ss_pred ---hhccceeeecCCCCCChHHHHHHHHhhccccccc-------CCCCcCCCCccccCC-------------CCCChhhh
Q 015338 255 ---GKVGNSWRTTGDINDTWASMTSIADINDKWASYA-------GPGGWNDPDMLEVGN-------------GGMSYQEY 311 (408)
Q Consensus 255 ---~~~~n~wRis~Di~~~W~~~~~~~~~~~~~~~~~-------gpg~wnDpDmL~vg~-------------~~lT~~E~ 311 (408)
.+++|+|||++|+++.|.++..+++....|+.++ ++++|||||||+||. .+||.+|+
T Consensus 257 ~~v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~ 336 (633)
T PLN02899 257 KEVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQ 336 (633)
T ss_pred hhhhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHH
Confidence 4678999999999999999998887655554322 245899999999992 25999999
Q ss_pred HHHHHHHHHhcCceeeecCCCCCCHHHHHhhccHhhHhhhcCCCCcccE
Q 015338 312 RAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGR 360 (408)
Q Consensus 312 rt~~slwai~gsPL~ig~Dl~~l~~~~l~lL~N~eviainQD~lG~~~~ 360 (408)
|+||+||||++|||++|+||++|+++.++||+|+||||||||++|..--
T Consensus 337 rThfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~ 385 (633)
T PLN02899 337 KTQMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEF 385 (633)
T ss_pred HHHHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeee
Confidence 9999999999999999999999999999999999999999998875444
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=1.4e-45 Score=375.39 Aligned_cols=316 Identities=26% Similarity=0.379 Sum_probs=212.8
Q ss_pred cccCCceeccccc----chhHhhhhhhhhccccchhccCCCCCCCceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCC
Q 015338 51 PLLQSYEKASYSR----GFSRNFGKIFDTSNYGILQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELG 126 (408)
Q Consensus 51 ~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G 126 (408)
++++|.++++||. |||++||+|+|+++.+.. ...++|||+||||+++++++||+.++++|+.+ +++|
T Consensus 1 sf~tP~~~~~~s~~gl~~~s~~~h~~~r~~~~~~~----~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~-----~~~G 71 (394)
T PF02065_consen 1 SFQTPEAVASYSDQGLNGMSQRFHRFVRRHLLRPP----WRDKPPPVGWNSWEAYYFDITEEKILELADAA-----AELG 71 (394)
T ss_dssp EEE---EEEEEESBHHHHHHHHHHHHHHHHTSTTT----TTTSS--EEEESHHHHTTG--HHHHHHHHHHH-----HHHT
T ss_pred CccCCeEEEEEecCCHHHHHHHHHHHHHHhcCCCc----cCCCCCceEEEcccccCcCCCHHHHHHHHHHH-----HHhC
Confidence 5789999999994 667999999999877633 24688999999999999999999999999999 7889
Q ss_pred ceEEEeCCCccCCCCCCC----CCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcc---------------------
Q 015338 127 YDHVNIDDCWSSPLRDLK----GQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF--------------------- 181 (408)
Q Consensus 127 ~~~~~iDDGW~~~~rd~~----G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~--------------------- 181 (408)
|++|+||||||.. |+.+ |+|.+|++|||+||++|+++||++|||||||++|++-
T Consensus 72 ~e~fviDDGW~~~-r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~ 150 (394)
T PF02065_consen 72 YEYFVIDDGWFGG-RDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRP 150 (394)
T ss_dssp -SEEEE-SSSBCT-ESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE
T ss_pred CEEEEEcCccccc-cCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCC
Confidence 9999999999985 4433 9999999999999999999999999999999999741
Q ss_pred ---------ccCCCccchhhHHh-HHHHHHHcCCcEEEeecCCCCCC---C----cccccH----HHHHHHHhcCCCceE
Q 015338 182 ---------TCQVRPGSLFHEKD-DAPLFASWGVDYLKYDNCFNLGI---E----PKKRYP----PMRDALNETGCSIFY 240 (408)
Q Consensus 182 ---------~c~~~Pgs~~~~~~-~~~~~~~wGvdylK~D~~~~~~~---~----~~~~Y~----~m~~AL~~~Gr~i~~ 240 (408)
-|.++|++++|+.. ..+.+++|||||||+|||..... . ...+|. ++.++|.+..+++++
T Consensus 151 ~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 151 PTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp -ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred CcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 12578999999965 55678999999999999965421 1 122333 588899999999999
Q ss_pred eeCCCCCC--Chhhhhhhcc-ceeeecCCCCCChHHHHHHHHhhcccccccCCCCc-CCCCccccCCCCCChhhhHHHHH
Q 015338 241 SLCEWGVD--DPALWAGKVG-NSWRTTGDINDTWASMTSIADINDKWASYAGPGGW-NDPDMLEVGNGGMSYQEYRAHFS 316 (408)
Q Consensus 241 s~c~~g~~--~p~~w~~~~~-n~wRis~Di~~~W~~~~~~~~~~~~~~~~~gpg~w-nDpDmL~vg~~~lT~~E~rt~~s 316 (408)
+.|++|.. ++.+ ..+. ..| ..|..+.++++..+......+ .....+.| .+.....+ +..++-+.|.+.+
T Consensus 231 E~CssGG~R~D~g~--l~~~~~~w--~SD~tda~~R~~iq~g~s~~~-p~~~~~~hv~~~p~~~~--~r~~~l~~r~~~a 303 (394)
T PF02065_consen 231 ENCSSGGGRFDPGM--LYYTPQSW--TSDNTDALERLRIQYGTSLFY-PPEYMGAHVSASPNHQT--GRTTPLEFRAHVA 303 (394)
T ss_dssp EE-BTTBTTTSHHH--HCCSSEEE--SBST-SHHHHHHHHHHHCTTS-SGGGEEEEEEHSS-TTT--HHHGGHHHHHHHH
T ss_pred EeccCCCCccccch--heeccccc--cCCccchHHHhhhhccccccc-CHHHhCCeEEecccccc--CCcccceechhhh
Confidence 99998853 3332 1333 345 456667766766665432111 11111222 11111111 1234455555544
Q ss_pred HHHHhcCceeeecCCCCCCHHHHHhhcc-----HhhHhhhcCCCCcccEEeeecCCCCeEEEEE--EcCCcEEEEEEccc
Q 015338 317 IWALMKAPLLIGCDVRNMTAETFEILSN-----KEVIAVNQDPLGVQGRKVYVSGTDNCLQVFL--ISSYRILGLCCCPK 389 (408)
Q Consensus 317 lwai~gsPL~ig~Dl~~l~~~~l~lL~N-----~eviainQD~lG~~~~~v~~~~~~~~~~vw~--l~~g~~aValfN~~ 389 (408)
|| +.+.++.|+.++++++++.++. |++..+-|. |...++.... +.....|. ..|++.||+++.+.
T Consensus 304 ~~----g~~g~e~dl~~ls~~e~~~~~~~ia~YK~~r~li~~--G~~yrL~~p~--~~~~~~~~~v~~d~~~av~~~~~~ 375 (394)
T PF02065_consen 304 MF----GRLGLELDLTKLSEEELAAVKEQIAFYKSIRPLIQS--GDFYRLDSPD--DSNWDAWQVVSPDKSEAVVFVFRL 375 (394)
T ss_dssp TC----SEEEEESTGCGS-HHHHHHHHHHHHHHHHCHHHHHH--SEEEECCTTC--CHCEEEEEEE-TTSSEEEEEEEET
T ss_pred hc----CCceeccCcccCCHHHHHHHHHHHHHHHhHHHHhcC--CcEEEecCCC--ccceEEEEEEcCCCCEEEEEEEEc
Confidence 43 7888999999999998877653 455666665 6555443322 22466786 67899999988765
Q ss_pred CC
Q 015338 390 FG 391 (408)
Q Consensus 390 ~~ 391 (408)
..
T Consensus 376 ~~ 377 (394)
T PF02065_consen 376 LS 377 (394)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-33 Score=285.09 Aligned_cols=218 Identities=18% Similarity=0.277 Sum_probs=178.4
Q ss_pred ceeEeeeeecccceeeeeeeeeeeeeccccccccccc--cccCCceeccccc----chhHhhhhhhhhccccchhccCCC
Q 015338 14 EKMRVGVAMSSMKKKRFVFALVLSLIIDVGFAGRVVV--PLLQSYEKASYSR----GFSRNFGKIFDTSNYGILQLNNGL 87 (408)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~ 87 (408)
.+.+..|+++...+.|+.-| ++|..+.|-+.+ ++.+|+++..|++ |||+.+|.++|.++.+. +-.
T Consensus 218 gnf~~f~ev~q~~~~~Vq~g-----~l~~~~e~~l~~~e~f~tpe~lv~~edqgl~~lsq~y~~~v~~~i~~~----~~~ 288 (687)
T COG3345 218 GNFAAFVEVHQHPFFRVQDG-----ILPFDGEWFLEEFESFVTPEVLVVLEDQGLNGLSQKYAELVRMEIVPR----PRV 288 (687)
T ss_pred cchhheeeeccCchhhhhhc-----ccccCceEecccccccCCceEEEEEcCCCcchHHHHHHHHHHhhcCcc----ccc
Confidence 45678899999999999988 999999999999 9999999999996 88899999999987652 235
Q ss_pred CCCCceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCC----CCeeecCCCCCCCHHHHHH
Q 015338 88 ASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK----GQLVPDTITFPSGIKALAD 163 (408)
Q Consensus 88 ~~~pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~----G~~~~d~~~FP~Glk~l~~ 163 (408)
.+++|+|||||+++|++++++.++++++.+ |+.|+|.|+||||||.. |+++ |||.++.+|||+|+.+|++
T Consensus 289 ~kprPi~~nsWea~Yfd~t~e~ile~vk~a-----kk~gvE~FvlDDGwfg~-rndd~~slGDWlv~seKfPsgiE~li~ 362 (687)
T COG3345 289 KKPRPIGWNSWEAYYFDFTEEEILENVKEA-----KKFGVELFVLDDGWFGG-RNDDLKSLGDWLVNSEKFPSGIEELIE 362 (687)
T ss_pred CCCCcceeeceeeeeecCCHHHHHHHHHHH-----hhcCeEEEEEccccccc-cCcchhhhhceecchhhccccHHHHHH
Confidence 688999999999999999999999999998 88899999999999984 5433 9999999999999999999
Q ss_pred HHHHcCCeEEEEeeCCcccc------------------------------CCCccch---------hhHHhHHHHHH-Hc
Q 015338 164 YVHGKGLKLGIYSDAGVFTC------------------------------QVRPGSL---------FHEKDDAPLFA-SW 203 (408)
Q Consensus 164 ~ih~~G~k~Glw~~pg~~~c------------------------------~~~Pgs~---------~~~~~~~~~~~-~w 203 (408)
.|++.||+||||++|++-.- ..+|.+. .+....++.++ +|
T Consensus 363 ~I~e~Gl~fGIWlePemvs~dSdlfrqHPDWvvk~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdm 442 (687)
T COG3345 363 AIAENGLIFGIWLEPEMVSEDSDLFRQHPDWVVKVNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDM 442 (687)
T ss_pred HHHHcCCccceeecchhcccchHHHhhCCCeEEecCCccccccccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHh
Confidence 99999999999999986110 1234333 34445556677 78
Q ss_pred CCcEEEeecCCCCCCCcccccH--HHHHHHHhcCCCceEeeCCCCC
Q 015338 204 GVDYLKYDNCFNLGIEPKKRYP--PMRDALNETGCSIFYSLCEWGV 247 (408)
Q Consensus 204 GvdylK~D~~~~~~~~~~~~Y~--~m~~AL~~~Gr~i~~s~c~~g~ 247 (408)
|..++|+|+.+++... .++|. .+-+.|..-...|.|.-|..|.
T Consensus 443 nr~l~klg~~~~~~l~-qqry~ly~l~~~l~~k~~~i~FeScasGg 487 (687)
T COG3345 443 NRELFKLGFLFWGALP-QQRYQLYRLFDQLNLKFPHILFESCASGG 487 (687)
T ss_pred CcceeecCCCCCcccc-chHHHHHHHHHHhhhcCCCchhhhhcccc
Confidence 8888888888776543 33343 3345566667888899898765
No 9
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.91 E-value=3.9e-23 Score=220.31 Aligned_cols=288 Identities=17% Similarity=0.174 Sum_probs=195.3
Q ss_pred CCCCc-----eEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCC----------------C
Q 015338 88 ASTPQ-----MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG----------------Q 146 (408)
Q Consensus 88 ~~~pP-----~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G----------------~ 146 (408)
.++.| +|||||++||.++||+.|++.++.|.+.|.. .++++||||||....|..+ +
T Consensus 195 ~K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p---~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~ 271 (758)
T PLN02355 195 RKKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVT---PKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTH 271 (758)
T ss_pred hccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCC---ccEEEEeccccccccccccccccccccchhhhhhcc
Confidence 35677 9999999999999999999999999886655 6899999999985333222 1
Q ss_pred eeecCCCCC-------------CCHHHHHHHHHH-cCCe-EEEEeeC---------Cc---c-------ccC--------
Q 015338 147 LVPDTITFP-------------SGIKALADYVHG-KGLK-LGIYSDA---------GV---F-------TCQ-------- 184 (408)
Q Consensus 147 ~~~d~~~FP-------------~Glk~l~~~ih~-~G~k-~Glw~~p---------g~---~-------~c~-------- 184 (408)
+..++ ||| .||+.+++.+|+ .|+| +|+|.+- +. . .+.
T Consensus 272 f~~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~ 350 (758)
T PLN02355 272 IKENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSN 350 (758)
T ss_pred ccccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCccccc
Confidence 23443 676 499999999985 7887 5899753 11 0 000
Q ss_pred ----------------CCc-cchhhHHhHHHHHHHcCCcEEEeecCCCCC-----C-CcccccHHHHHHHHhc------C
Q 015338 185 ----------------VRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------G 235 (408)
Q Consensus 185 ----------------~~P-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~-----~-~~~~~Y~~m~~AL~~~------G 235 (408)
-+| .++.+++.....+++-|||+||+|...... . ...+.-++..+||+++ +
T Consensus 351 ~~~~a~d~i~~~G~glv~Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r~F~~ 430 (758)
T PLN02355 351 EPCDALESITTNGLGLVNPEKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIARNFPD 430 (758)
T ss_pred CcchhhhhcccCceeccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHHhCCC
Confidence 012 246788888999999999999999975431 1 1122223445555432 4
Q ss_pred CCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHH-HHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHH
Q 015338 236 CSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMT-SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAH 314 (408)
Q Consensus 236 r~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~-~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~ 314 (408)
..++-++|+. +...|..+...+.|+|+|..+.+.... .++-.+++.+-+.+...|+|.||++.-++ -.+.|
T Consensus 431 ngvI~CMs~~---~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMF~S~hp-----~A~~H 502 (758)
T PLN02355 431 NGIISCMSHN---TDGLYSAKRTAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHP-----MAEYH 502 (758)
T ss_pred CceEEecccC---chhhcccccceeeeeccccccCCCccCchhhhhhhhhhhhhccccccCcccceecCc-----cHHHH
Confidence 4555444432 223455677789999999998876432 12222333344556678999999986553 46799
Q ss_pred HHHHHHhcCceeeecCCCCCCHHHHHhhc--cHhhHhhhcCCCCccc-EEeeecCC---CCeEEEEEEcCCcEEEEEEcc
Q 015338 315 FSIWALMKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQG-RKVYVSGT---DNCLQVFLISSYRILGLCCCP 388 (408)
Q Consensus 315 ~slwai~gsPL~ig~Dl~~l~~~~l~lL~--N~eviainQD~lG~~~-~~v~~~~~---~~~~~vw~l~~g~~aValfN~ 388 (408)
.+..|++|+|++|||-+.+-+-+-+.-|. +-.|++.... |.+. ..++.++. ..-..||.+..++-+|++||-
T Consensus 503 AaaRAisGGPIYvSD~PG~hdf~LLk~LvlpdGsIlR~~~p--g~PtrDclF~Dp~~dg~slLKIwn~nk~sGviG~FNc 580 (758)
T PLN02355 503 AAARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLP--GRPTRDCLFSDPARDGKSLLKIWNLNEFTGVIGVFNC 580 (758)
T ss_pred HHHHhccCCcEEEecCCCCccHHHHHhhhCCCCceeccccC--CCcchhhhccccccCCceEEEEEEcCCcccEEEEEec
Confidence 99999999999999998887766655443 3455555543 4444 24444331 124678888888889999995
Q ss_pred c
Q 015338 389 K 389 (408)
Q Consensus 389 ~ 389 (408)
.
T Consensus 581 q 581 (758)
T PLN02355 581 Q 581 (758)
T ss_pred c
Confidence 4
No 10
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.91 E-value=4.9e-23 Score=219.23 Aligned_cols=289 Identities=16% Similarity=0.170 Sum_probs=195.2
Q ss_pred CCCCc-----eEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCC--------C--------C
Q 015338 88 ASTPQ-----MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK--------G--------Q 146 (408)
Q Consensus 88 ~~~pP-----~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~--------G--------~ 146 (408)
.++.| +|||||++||.++||+.|++.++.|.+.|.. .++++||||||....+.. | .
T Consensus 191 ~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip---~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 191 KKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTP---PKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred cccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEccCccccccccccccccccccchhhhhhcc
Confidence 46788 9999999999999999999999999886665 689999999998543311 1 1
Q ss_pred eeecCC--------CCCCCHHHHHHHHHH-cCCe-EEEEeeC---------C---c--ccc-----C-------C-----
Q 015338 147 LVPDTI--------TFPSGIKALADYVHG-KGLK-LGIYSDA---------G---V--FTC-----Q-------V----- 185 (408)
Q Consensus 147 ~~~d~~--------~FP~Glk~l~~~ih~-~G~k-~Glw~~p---------g---~--~~c-----~-------~----- 185 (408)
+..+++ .||.|||.+++.+|+ .|+| +|+|.+- + + +.+ . +
T Consensus 268 f~en~KF~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a 347 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGNQPDIV 347 (775)
T ss_pred ccccccccccccccCCCCcHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCccccCcchh
Confidence 223331 589999999999984 7887 5899753 1 1 000 0 0
Q ss_pred ------------Cc-cchhhHHhHHHHHHHcCCcEEEeecCCCCC-----C-CcccccHHHHHHHHhc------CCCceE
Q 015338 186 ------------RP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------GCSIFY 240 (408)
Q Consensus 186 ------------~P-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~-----~-~~~~~Y~~m~~AL~~~------Gr~i~~ 240 (408)
+| .++.+++.....+++-|||+||+|...... . ...+.-++..+||+++ +..++-
T Consensus 348 ~d~l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~r~F~~ng~I~ 427 (775)
T PLN02219 348 MDSLSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASIARNFTDNGCIS 427 (775)
T ss_pred hhhhhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 12 256788888999999999999999876321 1 1122223445555433 444554
Q ss_pred eeCCCCCCChhhhhhhccceeeecCCCCCChHHHH-HHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHHHHHHH
Q 015338 241 SLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMT-SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWA 319 (408)
Q Consensus 241 s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~-~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwa 319 (408)
++|+. +...|..+...+.|+|+|..+.+.... .++-.+++.+-+.+.-.|+|.||++.-++ -.+.|.+..|
T Consensus 428 CMsh~---~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLllg~~v~PDWDMFqS~Hp-----~A~~HAaaRA 499 (775)
T PLN02219 428 CMCHN---TDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHP-----AAEYHGAARA 499 (775)
T ss_pred ecccC---chhhhcccccceeecccccccCCCccCcchhhhhhhhhHHhccccccCchhceecCc-----cHHHHHHHHh
Confidence 44432 223455677789999999998775422 11212233334445557999999987553 4589999999
Q ss_pred HhcCceeeecCCCCCCHHHHHhhc--cHhhHhhhcCCCCcccE-EeeecCC---CCeEEEEEEcCCcEEEEEEccc
Q 015338 320 LMKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQGR-KVYVSGT---DNCLQVFLISSYRILGLCCCPK 389 (408)
Q Consensus 320 i~gsPL~ig~Dl~~l~~~~l~lL~--N~eviainQD~lG~~~~-~v~~~~~---~~~~~vw~l~~g~~aValfN~~ 389 (408)
++|+|++|||-+.+-+-+-+.-|. +-.|++.... |.+.+ .++.++. ..-..||.+..++-+|++||-.
T Consensus 500 iSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDclF~Dp~~dg~slLKIwn~n~~~gviG~FNcq 573 (775)
T PLN02219 500 VGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLP--GRPTRDCLFADPARDGTSLLKIWNVNKCTGVVGVFNCQ 573 (775)
T ss_pred hcCCcEEEecCCCCccHHHHHHhhCCCCceeccccC--CCcchhhhccccCCCCceEEEEEEcccccceEEEEecc
Confidence 999999999998887766655443 4455555543 44422 3433321 1347889877788899999964
No 11
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.89 E-value=4.1e-22 Score=212.01 Aligned_cols=283 Identities=18% Similarity=0.206 Sum_probs=192.0
Q ss_pred eEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCC------------C---eeecCCCCCC-
Q 015338 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG------------Q---LVPDTITFPS- 156 (408)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G------------~---~~~d~~~FP~- 156 (408)
+|||||++||.+++|+.|++.++.|.+.|.. .++++||||||....|... + +..+ .|||+
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p---~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~ 279 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTP---PKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKK 279 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEecccccccccccccccccccchhhhhhccCccc-cccccc
Confidence 7999999999999999999999999886665 6899999999985443210 1 2344 67874
Q ss_pred -----CHHHHHHHHH-HcCCe-EEEEeeC---------Cc-----cc-----c-----------------C-------CC
Q 015338 157 -----GIKALADYVH-GKGLK-LGIYSDA---------GV-----FT-----C-----------------Q-------VR 186 (408)
Q Consensus 157 -----Glk~l~~~ih-~~G~k-~Glw~~p---------g~-----~~-----c-----------------~-------~~ 186 (408)
|||.+++.|+ +.|+| +|+|.+- +. +. + . -+
T Consensus 280 ~~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~~~g~glv~ 359 (750)
T PLN02684 280 DDPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMTLQGLGLVN 359 (750)
T ss_pred cCCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccccccCcccccC
Confidence 9999999997 77888 5899753 11 00 0 0 11
Q ss_pred c-cchhhHHhHHHHHHHcCCcEEEeecCCCCC-----C-CcccccHHHHHHHHhc------CCCceEeeCCCCCCChhhh
Q 015338 187 P-GSLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------GCSIFYSLCEWGVDDPALW 253 (408)
Q Consensus 187 P-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~-----~-~~~~~Y~~m~~AL~~~------Gr~i~~s~c~~g~~~p~~w 253 (408)
| .++.+++.....+++-|||+||+|...... . ...+.-++..+||+++ +..++-++|+. +...|
T Consensus 360 P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~---~d~i~ 436 (750)
T PLN02684 360 PKKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHN---TDALY 436 (750)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccC---chhhh
Confidence 2 256788888999999999999999975321 1 1112223444565433 23344444332 22346
Q ss_pred hhhccceeeecCCCCCChHHHH-HHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHHHHHHHHhcCceeeecCCC
Q 015338 254 AGKVGNSWRTTGDINDTWASMT-SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVR 332 (408)
Q Consensus 254 ~~~~~n~wRis~Di~~~W~~~~-~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwai~gsPL~ig~Dl~ 332 (408)
..+...+.|+|+|..+.+.... .++-.+++.+-+.+.-.|+|.||++.-++ -.+.|.+..|++|+|++|||-+.
T Consensus 437 ~sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMFqS~hp-----~A~~HAaaRAisGGPIYvSD~PG 511 (750)
T PLN02684 437 CSKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVFLGEFMQPDWDMFHSLHP-----AAEYHASARAISGGPLYVSDAPG 511 (750)
T ss_pred cccccceeeeccccccCCCccchhhhhhhhhhhhhhccccccCcccceecCc-----cHHHHHHHHhhcCCceEEecCCC
Confidence 6677889999999998765422 12222333334455557999999987554 45899999999999999999888
Q ss_pred CCCHHHHHhhc--cHhhHhhhcCCCCccc-EEeeecCC---CCeEEEEEEcCCcEEEEEEccc
Q 015338 333 NMTAETFEILS--NKEVIAVNQDPLGVQG-RKVYVSGT---DNCLQVFLISSYRILGLCCCPK 389 (408)
Q Consensus 333 ~l~~~~l~lL~--N~eviainQD~lG~~~-~~v~~~~~---~~~~~vw~l~~g~~aValfN~~ 389 (408)
+-+-+-+.-|. +-.|++.... |.+. ..++.++. ..-..||.+..++-+|++||-.
T Consensus 512 ~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDcLF~DP~~dg~slLKIwn~n~~tGViG~FNcq 572 (750)
T PLN02684 512 KHNFELLKKLVLPDGSILRARLP--GRPTRDCLFSDPARDGVSLLKIWNMNKYTGVLGVYNCQ 572 (750)
T ss_pred CccHHHHHhhhCCCCcccccccC--CccchhhhccCcccCCccEEEEEEecCCCceEEEEecc
Confidence 87766555443 3455555543 4444 23355432 1247889977888899999964
No 12
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.88 E-value=1.7e-21 Score=207.54 Aligned_cols=282 Identities=17% Similarity=0.159 Sum_probs=183.1
Q ss_pred eEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCC-------------C--------Ceeec-
Q 015338 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK-------------G--------QLVPD- 150 (408)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~-------------G--------~~~~d- 150 (408)
+|||||++||.++|++.|++-++.+.+.|.. ..+++||||||.-..+.+ | ++..|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip---~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~ 291 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCP---PGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENY 291 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCC---ccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccc
Confidence 7999999999999999999999999887766 579999999997422211 1 12233
Q ss_pred --------CCCCCCCHHHHHHHHHHc--CCe-EEEEeeC---------Cc--------c----------cc---------
Q 015338 151 --------TITFPSGIKALADYVHGK--GLK-LGIYSDA---------GV--------F----------TC--------- 183 (408)
Q Consensus 151 --------~~~FP~Glk~l~~~ih~~--G~k-~Glw~~p---------g~--------~----------~c--------- 183 (408)
+..||.|||.+++.|+++ |+| +|+|.+- +. . +.
T Consensus 292 KF~~~~~~~~~~p~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~ 371 (777)
T PLN02711 292 KFRDYVSPKSLSNKGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIV 371 (777)
T ss_pred cccccccccCCCCCcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccc
Confidence 345678999999999984 687 5899753 11 0 00
Q ss_pred -----CCCc-cchhhHHhHHHHHHHcCCcEEEeecCCCCCC---C---cccccHHHHHHHHhc------CCCceEeeCCC
Q 015338 184 -----QVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI---E---PKKRYPPMRDALNET------GCSIFYSLCEW 245 (408)
Q Consensus 184 -----~~~P-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~---~---~~~~Y~~m~~AL~~~------Gr~i~~s~c~~ 245 (408)
.-+| .++.+++.....+++-|||+||+|-...... . ..+.-++..+||+++ +..++-++|..
T Consensus 372 ~~g~glv~Pe~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~F~~ng~I~CMs~~ 451 (777)
T PLN02711 372 NNGVGLVPPELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKHFNGNGVIASMEHC 451 (777)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccC
Confidence 0112 2567888889999999999999998654211 1 122223445555332 34455444432
Q ss_pred CCCChh-hh-hhhccceeeecCCCCCChHHHH---------HHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHH
Q 015338 246 GVDDPA-LW-AGKVGNSWRTTGDINDTWASMT---------SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAH 314 (408)
Q Consensus 246 g~~~p~-~w-~~~~~n~wRis~Di~~~W~~~~---------~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~ 314 (408)
+. .+ ..+...+-|+|+|..+.-..-. .++-.+++.+-+.+.-.|+|.||++.-++ -.+.|
T Consensus 452 ----~d~~~~~tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyNSLllg~~v~PDWDMF~S~Hp-----~A~~H 522 (777)
T PLN02711 452 ----NDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHP-----CAEFH 522 (777)
T ss_pred ----chhhhccCcccceeeecccccCCCCccccccccccccceeeeehhhhhhhcccccCCchhhhccCc-----hHHHH
Confidence 21 11 1244567899999885432110 12222333344455567899999987553 66899
Q ss_pred HHHHHHhcCceeeecCCCCCCHHHHHhhc--cHhhHhhhcCCCCcccE-EeeecCC---CCeEEEEEEcCCcEEEEEEcc
Q 015338 315 FSIWALMKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQGR-KVYVSGT---DNCLQVFLISSYRILGLCCCP 388 (408)
Q Consensus 315 ~slwai~gsPL~ig~Dl~~l~~~~l~lL~--N~eviainQD~lG~~~~-~v~~~~~---~~~~~vw~l~~g~~aValfN~ 388 (408)
.+..|++|+|++|||-+.+-+-+-+.-|. +-.|++.... |.+.| .++.+.- ..-..||.+..++-+|++||-
T Consensus 523 AaaRAisGGPIYVSD~pG~Hdf~LLk~LvlpdGsIlR~~~p--g~PtrDcLF~DP~~dg~slLKIwn~nk~tGviG~FNc 600 (777)
T PLN02711 523 AASRAISGGPIYVSDSVGKHNFPLLKRLVLPDGSILRCQYY--ALPTRDCLFEDPLHDGKTMLKIWNLNKFTGVIGAFNC 600 (777)
T ss_pred HHHHhhcCCCEEEecCCCCccHHHHHhhhCCCCcEecccCC--CCccchhhccccccCCceEEEEEeecCCcceEEEEEe
Confidence 99999999999999988877666554443 3455655543 44444 3333321 124678886566669999996
No 13
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.88 E-value=2.7e-21 Score=207.42 Aligned_cols=283 Identities=22% Similarity=0.287 Sum_probs=188.8
Q ss_pred eEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCC------------C-----Ce--------
Q 015338 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK------------G-----QL-------- 147 (408)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~------------G-----~~-------- 147 (408)
+|||||++||.+++++.|++.++.|.+.|.. ..+++||||||.-.++.. | +|
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIP---PRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCC---ceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 7999999999999999999999999887665 579999999997543322 1 11
Q ss_pred -ee-----cCCCCCCCHHHHHHHHHHc--CCe-EEEEeeC-Cc---------c----c---c------------------
Q 015338 148 -VP-----DTITFPSGIKALADYVHGK--GLK-LGIYSDA-GV---------F----T---C------------------ 183 (408)
Q Consensus 148 -~~-----d~~~FP~Glk~l~~~ih~~--G~k-~Glw~~p-g~---------~----~---c------------------ 183 (408)
.- .++.||+||+.+++.|+++ |+| +|+|.+- |+ . . +
T Consensus 274 F~~~~~~~~~~~~~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~ 353 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSI 353 (747)
T ss_pred hhhccCCCcccCCcccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCcccccccc
Confidence 11 1246999999999999988 787 6999753 11 0 0 0
Q ss_pred ------CCCc-cchhhHHhHHHHHHHcCCcEEEeecCCCCCC------CcccccHHHHHHHHh----c--CCCceEeeCC
Q 015338 184 ------QVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------EPKKRYPPMRDALNE----T--GCSIFYSLCE 244 (408)
Q Consensus 184 ------~~~P-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~------~~~~~Y~~m~~AL~~----~--Gr~i~~s~c~ 244 (408)
.-.| .++.+++.....+++-|||+||+|....... ...+.-++..+||++ . +..++-++|+
T Consensus 354 ~~~g~glv~p~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~F~~~~vI~CMsh 433 (747)
T PF05691_consen 354 VKGGLGLVDPEDAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARHFSGNGVINCMSH 433 (747)
T ss_pred ccCcccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Confidence 0122 2567888889999999999999999754321 112222233444432 2 3456655554
Q ss_pred CCCCChhhhh-hhccceeeecCCCCCChHH----------HHHHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHH
Q 015338 245 WGVDDPALWA-GKVGNSWRTTGDINDTWAS----------MTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRA 313 (408)
Q Consensus 245 ~g~~~p~~w~-~~~~n~wRis~Di~~~W~~----------~~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt 313 (408)
.+ ...|. .+.....|+|+|..+.+.. ...++ .+++.+-+.+...|+|.||++.-++ ..+.
T Consensus 434 ~~---~~l~~~~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~-~nAyNsL~~g~~~~PDwDMF~S~h~-----~A~~ 504 (747)
T PF05691_consen 434 NP---DNLYHSTKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIA-HNAYNSLLLGQFVWPDWDMFQSSHP-----AAEF 504 (747)
T ss_pred Cc---cchhcccccccceeccccccCCCCCCCccccchhhHHHHH-HHHHHHHHHHhhcCCCcccccccCc-----cHHH
Confidence 22 22344 3556789999999876542 22333 2333333445558999999986442 5678
Q ss_pred HHHHHHHhcCceeeecCCCCCCHHHHHhh--ccHhhHhhhcCCCCcccE-EeeecCC-C--CeEEEEEEcCCcEEEEEEc
Q 015338 314 HFSIWALMKAPLLIGCDVRNMTAETFEIL--SNKEVIAVNQDPLGVQGR-KVYVSGT-D--NCLQVFLISSYRILGLCCC 387 (408)
Q Consensus 314 ~~slwai~gsPL~ig~Dl~~l~~~~l~lL--~N~eviainQD~lG~~~~-~v~~~~~-~--~~~~vw~l~~g~~aValfN 387 (408)
|.+..|++|+|++|||.+.+.+-+-++-| .+..|+..... |.+.+ .++.++- + .-..+|.+...+-+|++||
T Consensus 505 HAaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~p--g~Pt~d~Lf~dp~~d~~~lLKi~n~n~~~gvig~FN 582 (747)
T PF05691_consen 505 HAAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHP--GRPTRDCLFEDPLRDGKSLLKIWNLNKFTGVIGVFN 582 (747)
T ss_pred HHHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccC--CCCChhhhcccCCCCCceeEEEEecCCccceEEEEe
Confidence 99999999999999999888776655444 35567766654 44333 4444432 2 2467888555566899999
Q ss_pred cc
Q 015338 388 PK 389 (408)
Q Consensus 388 ~~ 389 (408)
-.
T Consensus 583 ~q 584 (747)
T PF05691_consen 583 CQ 584 (747)
T ss_pred cC
Confidence 63
No 14
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.74 E-value=8.8e-17 Score=159.40 Aligned_cols=172 Identities=18% Similarity=0.376 Sum_probs=127.0
Q ss_pred CCCceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc
Q 015338 89 STPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK 168 (408)
Q Consensus 89 ~~pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~ 168 (408)
-++|+ ||||+.+++.+||+.|++.|+.+++.|+ .++.|+||++|+. ..|+++.|+++||+ ++.++++||++
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~----~~g~f~~d~~~FPd-p~~mi~~l~~~ 82 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDNGF---PNGQIEIDDNWET----CYGDFDFDPTKFPD-PKGMIDQLHDL 82 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHcCC---CCCeEEeCCCccc----cCCccccChhhCCC-HHHHHHHHHHC
Confidence 34665 9999999999999999999999988554 4899999999986 36889999999998 99999999999
Q ss_pred CCeEEEEeeCCcc--------------------------------cc----CCCccchhhHHhHHHHHH-HcCCcEEEee
Q 015338 169 GLKLGIYSDAGVF--------------------------------TC----QVRPGSLFHEKDDAPLFA-SWGVDYLKYD 211 (408)
Q Consensus 169 G~k~Glw~~pg~~--------------------------------~c----~~~Pgs~~~~~~~~~~~~-~wGvdylK~D 211 (408)
|+|++||++|... .| .++|.+++++...++.+. ++|||++|+|
T Consensus 83 G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D 162 (303)
T cd06592 83 GFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFD 162 (303)
T ss_pred CCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 9999999998521 01 467888899977766655 9999999999
Q ss_pred cCCCCCC--C--------cccccH-HHHHHHHhcCCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHH---HHH
Q 015338 212 NCFNLGI--E--------PKKRYP-PMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASM---TSI 277 (408)
Q Consensus 212 ~~~~~~~--~--------~~~~Y~-~m~~AL~~~Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~---~~~ 277 (408)
++..... + ....|. .+.++..+.+ +++++-+.|... ..++-.| +.|...+|+.. ..+
T Consensus 163 ~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg~~g~------~~~~~~w--~GD~~s~W~~~~gl~~~ 233 (303)
T cd06592 163 AGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAGWRSQ------GLPLFVR--MMDKDSSWGGDNGLKSL 233 (303)
T ss_pred CCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEeeeecC------CCCeeEE--cCCCCCCCCCCcCHHHH
Confidence 9864211 0 112232 4455554444 677665443321 1223445 68888999865 555
Q ss_pred H
Q 015338 278 A 278 (408)
Q Consensus 278 ~ 278 (408)
+
T Consensus 234 i 234 (303)
T cd06592 234 I 234 (303)
T ss_pred H
Confidence 4
No 15
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.72 E-value=1.2e-16 Score=170.79 Aligned_cols=283 Identities=18% Similarity=0.187 Sum_probs=175.2
Q ss_pred eEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCC---------------------------
Q 015338 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG--------------------------- 145 (408)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G--------------------------- 145 (408)
.|||||.+||.+++++.|.+-.+.+++.|.. ..+++||||||.-..|..+
T Consensus 224 FGWCTWDAFY~~V~p~GV~~Gv~~l~~gG~p---prfvIIDDGWQsi~~d~~~~~~~~~~~~~~g~q~~~RL~~~~En~K 300 (865)
T PLN02982 224 FGWCTWDAFYLTVDPVGVWHGVKEFAEGGVP---PRFLIIDDGWQSINFDGDNPNEDAKNLVLGGTQMTARLYRFDECEK 300 (865)
T ss_pred ceEEeechhhcccCHHHHHHHHHHHhcCCCC---ccEEEEecchhhccccccCCchhhhhccccccchhhhhhcchhhhh
Confidence 6999999999999999999999999886666 4799999999974332110
Q ss_pred -------C-eeecC------------------------------------------------------------------
Q 015338 146 -------Q-LVPDT------------------------------------------------------------------ 151 (408)
Q Consensus 146 -------~-~~~d~------------------------------------------------------------------ 151 (408)
. ..+++
T Consensus 301 Frky~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 380 (865)
T PLN02982 301 FRNYKGGSMLGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAMFDGEEKSVSSESE 380 (865)
T ss_pred hhccccccccCCCcccccccccchhhhcccchhhhhhcccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence 0 00111
Q ss_pred -----CCCCCCHHHHHHHHHHc--CCe-EEEEeeC---------Ccc-------cc------------------------
Q 015338 152 -----ITFPSGIKALADYVHGK--GLK-LGIYSDA---------GVF-------TC------------------------ 183 (408)
Q Consensus 152 -----~~FP~Glk~l~~~ih~~--G~k-~Glw~~p---------g~~-------~c------------------------ 183 (408)
+.=|.|||.+++.|+.+ |+| +++|.+- +.. .+
T Consensus 381 ~~~~~~~~~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~g 460 (865)
T PLN02982 381 SSGSCKVSGSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIG 460 (865)
T ss_pred cccccccCcccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCcee
Confidence 12235999999999865 465 5888753 110 00
Q ss_pred CCCc-cchhhHHhHHHHHHHcCCcEEEeecCCCCCC---C---cc----cccHHHHHHHHhc--CCCceEeeCCCCCCCh
Q 015338 184 QVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI---E---PK----KRYPPMRDALNET--GCSIFYSLCEWGVDDP 250 (408)
Q Consensus 184 ~~~P-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~---~---~~----~~Y~~m~~AL~~~--Gr~i~~s~c~~g~~~p 250 (408)
.-+| .++.+++.....+++-|||+||+|....... . .. ..|..+..++++. ++.++-++|+.+ .
T Consensus 461 lv~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~---~ 537 (865)
T PLN02982 461 LVHPSQAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCN---D 537 (865)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCc---h
Confidence 0123 2567888899999999999999998753211 1 11 2223344444433 334444444321 1
Q ss_pred hhh-hhhccceeeecCCCCCC------hHHHH---HHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHHHHHHHH
Q 015338 251 ALW-AGKVGNSWRTTGDINDT------WASMT---SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWAL 320 (408)
Q Consensus 251 ~~w-~~~~~n~wRis~Di~~~------W~~~~---~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwai 320 (408)
..| ..+...+-|+|+|..+. |...+ .++-.+++.+-+.+.-.|+|.||++.-+ .-.+.|.+..||
T Consensus 538 ~~~~~tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyNSLl~G~~v~PDWDMFqS~H-----~~A~fHAaaRAI 612 (865)
T PLN02982 538 FFFLGTKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYNSMWMGQIIQPDWDMFQSDH-----LCAEFHAGSRAI 612 (865)
T ss_pred hhhccCCcceeeeccccccCCCCCcCccccccccceeeeehhhhhHhhccccccCchhccccC-----chHHHHHHHHhh
Confidence 123 23445678999998863 32211 1122223333455666899999998744 356899999999
Q ss_pred hcCceeeecCCCCCCHHHHHhhc--cHhhHhhhcCCCCcccE-EeeecCC-C--CeEEEEEEcCCcEEEEEEcc
Q 015338 321 MKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQGR-KVYVSGT-D--NCLQVFLISSYRILGLCCCP 388 (408)
Q Consensus 321 ~gsPL~ig~Dl~~l~~~~l~lL~--N~eviainQD~lG~~~~-~v~~~~~-~--~~~~vw~l~~g~~aValfN~ 388 (408)
+|+|+++||-+.+-+-+-+.-|. .-.|++-... |.+.| .++.++- | ....+|.+..-.-+|+.||-
T Consensus 613 sGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~p--g~PTrDcLF~DPl~DGks~LKIWN~Nk~~GViG~FNC 684 (865)
T PLN02982 613 CGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHY--ALPTRDCLFKNPLFDKKTILKIWNFNKFGGVIGAFNC 684 (865)
T ss_pred cCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCC--CCCCcchhccCcccCCceEEEEEeccCcCceEEEEEe
Confidence 99999999988887766555443 3345554443 33333 3443321 1 24677885444445778873
No 16
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.47 E-value=1.7e-12 Score=128.90 Aligned_cols=169 Identities=20% Similarity=0.289 Sum_probs=122.6
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEee
Q 015338 98 WNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSD 177 (408)
Q Consensus 98 W~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~ 177 (408)
|..-+...|++.+++.++.+++.|+. ++.|+||++|+.. ...|+++.|+++||+ ++.+++.+|++|+++++|+.
T Consensus 14 ~~~~~~y~~~~~v~~~~~~~~~~~iP---~d~~~lD~~w~~~--~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 14 WLSRSFYYDEEEVNEFADGMRERNLP---CDVIHLDCFWMKE--FQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred HHHcccCCCHHHHHHHHHHHHHcCCC---eeEEEEecccccC--CcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEec
Confidence 44444458999999999999775444 7899999999852 223589999999998 99999999999999999999
Q ss_pred CCccc--------------------------------c---CCCccchhhHHhHHHHHHHcCCcEEEeecCCCCC-----
Q 015338 178 AGVFT--------------------------------C---QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLG----- 217 (408)
Q Consensus 178 pg~~~--------------------------------c---~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~----- 217 (408)
|.... + .++|.+.+++....+.+.++|||++|+|++....
T Consensus 88 P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~ 167 (308)
T cd06593 88 PYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERIPTDVVY 167 (308)
T ss_pred CCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCCCccccc
Confidence 86310 0 3678889999888888889999999999986321
Q ss_pred ---CCc---cccc-----HHHHHHHHhc---CCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHHh
Q 015338 218 ---IEP---KKRY-----PPMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (408)
Q Consensus 218 ---~~~---~~~Y-----~~m~~AL~~~---Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~~ 280 (408)
..+ ...| +.+.+++++. .|+++++-+.+... ..++-.| +.|+..+|+.+...+..
T Consensus 168 ~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gs------qry~~~w--~GD~~s~w~~L~~~i~~ 236 (308)
T cd06593 168 YDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGS------QKYPVHW--GGDCESTFEGMAESLRG 236 (308)
T ss_pred cCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc------ccCCCEE--CCCcccCHHHHHHHHHH
Confidence 111 1222 2344555443 35888875544211 2455567 89999999988776643
No 17
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=99.33 E-value=6.3e-11 Score=115.36 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=121.0
Q ss_pred CCCCce-EEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCe--eecCCCCCCCHHHHHHH
Q 015338 88 ASTPQM-GWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL--VPDTITFPSGIKALADY 164 (408)
Q Consensus 88 ~~~pP~-GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~--~~d~~~FP~Glk~l~~~ 164 (408)
++.||. .+-.|...+...+++.+++.|+.+.+.++. ++.|.||++|+.. .|++ +.|+++||+ ++.++++
T Consensus 3 p~~~P~wa~G~~~~~~~~~~~~~v~~~~~~~~~~~iP---~d~~~lD~~~~~~----~~~f~~~~d~~~Fpd-p~~~i~~ 74 (265)
T cd06589 3 PALPPKWAFGYWLSRYGYGDQDKVLEVIDGMRENDIP---LDGFVLDDDYTDG----YGDFTFDWDAGKFPN-PKSMIDE 74 (265)
T ss_pred CCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC---ccEEEECcccccC----CceeeeecChhhCCC-HHHHHHH
Confidence 344564 134566666678999999999999885555 8999999999974 3445 999999999 9999999
Q ss_pred HHHcCCeEEEEeeCCccccCCCccchhhHHhHHHH-HHHcCCcEEEeecCCCCCCC----------------cccccH--
Q 015338 165 VHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPL-FASWGVDYLKYDNCFNLGIE----------------PKKRYP-- 225 (408)
Q Consensus 165 ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~-~~~wGvdylK~D~~~~~~~~----------------~~~~Y~-- 225 (408)
||++|+|+.+|+.|.. .++....++. +.+.|||++|+|++...... ....|.
T Consensus 75 l~~~g~~~~~~~~P~v---------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~ 145 (265)
T cd06589 75 LHDNGVKLVLWIDPYI---------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLL 145 (265)
T ss_pred HHHCCCEEEEEeChhH---------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHH
Confidence 9999999999999965 5666555554 48999999999998543211 012232
Q ss_pred ---HHHHHHHhc---CCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHHh
Q 015338 226 ---PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (408)
Q Consensus 226 ---~m~~AL~~~---Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~~ 280 (408)
...+++++. .|+++++-+.+... ..++-.| +.|+..+|+.+..++..
T Consensus 146 ~~~~~~~~~~~~~~~~r~~~~sRs~~~Gs------qry~~~W--~GD~~stW~~l~~~i~~ 198 (265)
T cd06589 146 YAEATYEALRKNSKNKRPFILSRSGYAGS------QRYAGMW--SGDNTSTWGYLRSQIPA 198 (265)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCcccc------cCcCcee--CCcccCCHHHHHHHHHH
Confidence 334555433 46888876654221 2455566 78999999988766653
No 18
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=99.32 E-value=4.7e-12 Score=123.49 Aligned_cols=209 Identities=17% Similarity=0.184 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCee-ecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-PDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~ 182 (408)
.+|.+..++.+|++ +++|++|+.||+||.....+...+.+ +.+. ..|+.|++|.++||.++-||..-....
T Consensus 28 g~~t~~~k~yIDfA-----a~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~Ya~~KgVgi~lw~~~~~~~ 99 (273)
T PF10566_consen 28 GATTETQKRYIDFA-----AEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVDYAKEKGVGIWLWYHSETGG 99 (273)
T ss_dssp SSSHHHHHHHHHHH-----HHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHHHHHHTT-EEEEEEECCHTT
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeccccccccccccccccccCCc---cCHHHHHHHHHHcCCCEEEEEeCCcch
Confidence 68999999999999 77899999999999853323222222 2211 259999999999999999999764311
Q ss_pred cCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeCCCCCCChhhhhhhcccee-
Q 015338 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSW- 261 (408)
Q Consensus 183 c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c~~g~~~p~~w~~~~~n~w- 261 (408)
- ........+..++++++|||..||+||....+....+.|..+.+.. +...+++.++ |...|..+.+.|-|+.
T Consensus 100 ~--~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~A--A~~~LmvnfH--g~~kPtG~~RTyPN~mT 173 (273)
T PF10566_consen 100 N--VANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDA--AEYKLMVNFH--GATKPTGLRRTYPNLMT 173 (273)
T ss_dssp B--HHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHH--HHTT-EEEET--TS---TTHHHCSTTEEE
T ss_pred h--hHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHH--HHcCcEEEec--CCcCCCcccccCccHHH
Confidence 0 0001223567789999999999999999887766666776555543 3578888887 4556766665554544
Q ss_pred ------------eecCCCCCChHHHHHHHHhhcccccccCC-----CCcCC-CCccccCCCCCChhhhHHHHHHHHHhcC
Q 015338 262 ------------RTTGDINDTWASMTSIADINDKWASYAGP-----GGWND-PDMLEVGNGGMSYQEYRAHFSIWALMKA 323 (408)
Q Consensus 262 ------------Ris~Di~~~W~~~~~~~~~~~~~~~~~gp-----g~wnD-pDmL~vg~~~lT~~E~rt~~slwai~gs 323 (408)
.-..+..+....+. ...+..+|| +.++. ...-..............++++..++-|
T Consensus 174 ~EgVrG~E~~~~~~~~~~~p~h~~~l------PFTR~l~GpmDyTPg~f~~~~~~~~~~~~~~~~tT~ahQLAl~Vv~~S 247 (273)
T PF10566_consen 174 REGVRGQEYNKWSGDGGNPPEHNTTL------PFTRMLAGPMDYTPGAFSNRTPFDPNYPNPRVQTTRAHQLALYVVFES 247 (273)
T ss_dssp E--S--GGGGGTT-TTS-HCCHHCTC------CCTCCCCS-B------SSEEGCGT-TTSS-BECS-HHHHHHHHHHS--
T ss_pred HHHhhhhhhcccccCCCCCCcceeec------cchhcCcCCcccCChhcccccccccCCCCCCCCCcHHHHHHHHHHHHH
Confidence 11111111111111 112233444 33321 0000011111222346788999999999
Q ss_pred ceeeecCCC
Q 015338 324 PLLIGCDVR 332 (408)
Q Consensus 324 PL~ig~Dl~ 332 (408)
||..-+|.+
T Consensus 248 plq~~aD~P 256 (273)
T PF10566_consen 248 PLQMLADSP 256 (273)
T ss_dssp SEEEE-S-H
T ss_pred HHHHHhcCH
Confidence 999988864
No 19
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.24 E-value=2.4e-10 Score=114.16 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc-
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT- 182 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~- 182 (408)
+.++++|++.++.+.+.+++ ++.|.||++|+.......+.++.|+++||+ .+.|++.||++|+|+-+|+.|....
T Consensus 25 ~~~q~~v~~~~~~~r~~~iP---~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~g~k~~~~i~P~i~~~ 100 (317)
T cd06599 25 PDAQEALLEFIDKCREHDIP---CDSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHERGIRLAPNIKPGLLQD 100 (317)
T ss_pred ccHHHHHHHHHHHHHHcCCC---eeEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHHCCCEEEEEeCCcccCC
Confidence 46699999999999886555 899999999987422233568899999998 9999999999999999999986310
Q ss_pred --------------------------c---------CCCccchhhHHhHH-HHHHHcCCcEEEeecCCCCC---------
Q 015338 183 --------------------------C---------QVRPGSLFHEKDDA-PLFASWGVDYLKYDNCFNLG--------- 217 (408)
Q Consensus 183 --------------------------c---------~~~Pgs~~~~~~~~-~~~~~wGvdylK~D~~~~~~--------- 217 (408)
+ .++|.+.++....+ +.+.+.|||++|.|++....
T Consensus 101 ~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~ 180 (317)
T cd06599 101 HPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWDDDAVCDG 180 (317)
T ss_pred CHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCCCcceecC
Confidence 0 36788888886655 77889999999999985420
Q ss_pred --C--C---cccccH-----HHHHHHHhc---CCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHHh
Q 015338 218 --I--E---PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (408)
Q Consensus 218 --~--~---~~~~Y~-----~m~~AL~~~---Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~~ 280 (408)
. . ....|. ...+++++. .|+++++-+.+.. ...++..| +.|+..+|+.+..++..
T Consensus 181 ~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G------~qry~~~W--sGD~~s~W~~L~~~i~~ 250 (317)
T cd06599 181 FGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAG------IQRYAQTW--SGDNRTSWKTLRYNIAM 250 (317)
T ss_pred CCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCccc------ccCCcCee--CCCcccCHHHHHHHHHH
Confidence 0 0 012232 334455443 4677776544321 12455667 78999999988776643
No 20
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.21 E-value=4.5e-10 Score=112.21 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCC--CCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcc
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR--DLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF 181 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~r--d~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~ 181 (408)
.-+++.+++.++.+.+.+++ ++.|.||.+|+.... ...|+++.|+++||+ .+.|++.||++|+|+-+|+.|...
T Consensus 20 y~~~~~v~~~~~~~~~~~iP---~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFP---LDAAILDLYWFGKDIDKGHMGNLDWDRKAFPD-PAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCC---ceEEEEechhhcCcccCCceeeeEeccccCCC-HHHHHHHHHHcCCcEEEEEcCccc
Confidence 45899999999999885555 899999999986332 245889999999998 999999999999999999988521
Q ss_pred c------------------------------------cCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCC-------
Q 015338 182 T------------------------------------CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------- 218 (408)
Q Consensus 182 ~------------------------------------c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~------- 218 (408)
. ..++|.+.++..+..+.+.+.|||++|.|++.....
T Consensus 96 ~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~ 175 (317)
T cd06598 96 KNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVHPPDMCHH 175 (317)
T ss_pred CCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccccCCccccC
Confidence 0 035888899988778888999999999999863210
Q ss_pred --C---cccccH-----HHHHHHHh---cCCCceEeeCCCCCCChhhhhhhccc-eeeecCCCCCChHHHHHHHHh
Q 015338 219 --E---PKKRYP-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWASMTSIADI 280 (408)
Q Consensus 219 --~---~~~~Y~-----~m~~AL~~---~Gr~i~~s~c~~g~~~p~~w~~~~~n-~wRis~Di~~~W~~~~~~~~~ 280 (408)
. ....|. ...+++++ ..||++++-+.+.. ...|+. .| +.|+..+|+.+..++..
T Consensus 176 ~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~G------sqry~~~~W--sGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 176 KGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAG------SQRYGVIPW--SGDVGRTWDGLKSQPNA 243 (317)
T ss_pred CCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCc------cccCcCCcc--CCCCcCCHHHHHHHHHH
Confidence 0 012232 33444543 24687776544321 024543 46 68999999988777653
No 21
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.19 E-value=4.6e-10 Score=113.12 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=116.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc
Q 015338 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~ 182 (408)
..-|++.+++.++.+.+.++. ++.|.||.+|+. ..+.++.|+++||+ .+.+++.+|++|+|+-+|+.|....
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIP---CDAIYLDIDYMD----GYRVFTWDKERFPD-PKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---cceEEECchhhC----CCCceeeccccCCC-HHHHHHHHHHCCCEEEEEEeCceeC
Confidence 345899999999999886655 899999999986 35678999999998 9999999999999999999885210
Q ss_pred ----------------------------c---------CCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCC-------
Q 015338 183 ----------------------------C---------QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------- 218 (408)
Q Consensus 183 ----------------------------c---------~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~------- 218 (408)
| .++|.+.++.....+.+.+.|||++|+|++.....
T Consensus 91 ~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~ 170 (339)
T cd06604 91 DPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTT 170 (339)
T ss_pred CCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCccccc
Confidence 1 35777888887777888899999999999753210
Q ss_pred --------------C---cccccH-----HHHHHHHhc---CCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHH
Q 015338 219 --------------E---PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWAS 273 (408)
Q Consensus 219 --------------~---~~~~Y~-----~m~~AL~~~---Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~ 273 (408)
. ....|. ...+++++. .|+++++-+.+... ..++-.| +.|+..+|+.
T Consensus 171 ~p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~ssW~~ 242 (339)
T cd06604 171 MPRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGI------QRYAAVW--TGDNRSSWEH 242 (339)
T ss_pred CCccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccc------ccccccc--CCcccCCHHH
Confidence 0 011232 233445433 47877765433211 2345556 7899999998
Q ss_pred HHHHHH
Q 015338 274 MTSIAD 279 (408)
Q Consensus 274 ~~~~~~ 279 (408)
+...+.
T Consensus 243 L~~~i~ 248 (339)
T cd06604 243 LRLSIP 248 (339)
T ss_pred HHHHHH
Confidence 776654
No 22
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.16 E-value=1.8e-09 Score=117.70 Aligned_cols=165 Identities=21% Similarity=0.303 Sum_probs=121.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc
Q 015338 101 FACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (408)
Q Consensus 101 ~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~ 180 (408)
++.+.+|+.+++.|+.+.+.++. ++.|.+|+.|+.. ...++++.|+++||+ .+.|++.+|++|+|+.+|+.|+.
T Consensus 276 ~~~~~~e~~v~~~~~~~r~~~iP---~d~i~lD~~w~~~--~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~i~P~i 349 (665)
T PRK10658 276 FTTNYDEATVNSFIDGMAERDLP---LHVFHFDCFWMKE--FQWCDFEWDPRTFPD-PEGMLKRLKAKGLKICVWINPYI 349 (665)
T ss_pred cccCCCHHHHHHHHHHHHHcCCC---ceEEEEchhhhcC--CceeeeEEChhhCCC-HHHHHHHHHHCCCEEEEeccCCc
Confidence 44456899999999999885554 7899999999863 123679999999998 99999999999999999999963
Q ss_pred cc-------------------------------c----CCCccchhhHHhHHHHHHHcCCcEEEeecCCCC--------C
Q 015338 181 FT-------------------------------C----QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL--------G 217 (408)
Q Consensus 181 ~~-------------------------------c----~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~--------~ 217 (408)
.. | .++|.+.++.....+.+.+.|||.+|.|++... +
T Consensus 350 ~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G 429 (665)
T PRK10658 350 AQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDG 429 (665)
T ss_pred CCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCC
Confidence 10 0 468889999988888889999999999986432 1
Q ss_pred CCc---ccccH-----HHHHHHHh-c--CCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHH
Q 015338 218 IEP---KKRYP-----PMRDALNE-T--GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (408)
Q Consensus 218 ~~~---~~~Y~-----~m~~AL~~-~--Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~ 279 (408)
.++ ...|. +..+++++ . .|+++++-|.+.. ...|+-.| +.|+..+|+.+...+.
T Consensus 430 ~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aG------sQry~~~W--sGD~~stw~~l~~si~ 494 (665)
T PRK10658 430 SDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVG------GQQFPVHW--GGDCYSNYESMAESLR 494 (665)
T ss_pred CcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCC------CCCCCCEE--CCCCCCCHHHHHHHHH
Confidence 111 22332 33445554 2 4788887665421 12455567 6999999998876664
No 23
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.12 E-value=2.2e-09 Score=106.12 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCC-----CCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeC
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL-----RDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDA 178 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~-----rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~p 178 (408)
..|++++++.|+.+.+.++. ++.|+||..|+... .+..++++.|+++||+ .+.|+++||++|+|+-+|+.|
T Consensus 21 y~s~~ev~~v~~~~r~~~iP---~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 21 PYSDEEYLALMDRFKKHNIP---LDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CCCHHHHHHHHHHHHHhCCC---ccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEeCC
Confidence 35899999999999986555 89999999998632 2456789999999998 999999999999999999999
Q ss_pred Cccc---------------c-----------CCCccchhhH-HhHHHHHHHcCCcEEEeecCCCCCC-----Ccc-----
Q 015338 179 GVFT---------------C-----------QVRPGSLFHE-KDDAPLFASWGVDYLKYDNCFNLGI-----EPK----- 221 (408)
Q Consensus 179 g~~~---------------c-----------~~~Pgs~~~~-~~~~~~~~~wGvdylK~D~~~~~~~-----~~~----- 221 (408)
.... + .++|.+.++. +...+.+.+.|||+++.|++..... .+.
T Consensus 97 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~ 176 (292)
T cd06595 97 ADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNH 176 (292)
T ss_pred CcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHH
Confidence 6210 0 3567777644 5666778899999999998753211 111
Q ss_pred cccHHHHHHHHhcCCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHH
Q 015338 222 KRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIA 278 (408)
Q Consensus 222 ~~Y~~m~~AL~~~Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~ 278 (408)
..|..++ +..+|+++++=+.+.. ...|+-.| +.|+..+|+.+...+
T Consensus 177 ~~y~~~~---~~~~r~f~lsRs~~~G------~qry~~~W--sGD~~s~W~~l~~~i 222 (292)
T cd06595 177 VHYLDSA---RNGRRPLIFSRWAGLG------SHRYPIGF--SGDTIISWASLAFQP 222 (292)
T ss_pred HHHHHhh---ccCCCcEEEEeecccC------CCcCCCcc--CCCcccCHHHHHHHH
Confidence 0111111 1347888887554321 12566678 799999999876554
No 24
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.10 E-value=3.9e-09 Score=105.55 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc-
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT- 182 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~- 182 (408)
.-|++++++.++.+.+.++. ++.|.||.+|+. ..++++.|+++||+ .+.+++.+|++|+|+-+|+.|+...
T Consensus 20 y~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~~i~~l~~~g~k~~~~~~P~i~~~ 91 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFP---YDVVFLDIHYMD----SYRLFTWDPYRFPE-PKKLIDELHKRNVKLVTIVDPGIRVD 91 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCC---cceEEEChhhhC----CCCceeechhcCCC-HHHHHHHHHHCCCEEEEEeeccccCC
Confidence 45899999999999885544 899999999986 35678999999998 9999999999999999999886310
Q ss_pred ------------------------------------cCCCccchhhHHhHHHHHH-HcCCcEEEeecCCCCCC-Cccccc
Q 015338 183 ------------------------------------CQVRPGSLFHEKDDAPLFA-SWGVDYLKYDNCFNLGI-EPKKRY 224 (408)
Q Consensus 183 ------------------------------------c~~~Pgs~~~~~~~~~~~~-~wGvdylK~D~~~~~~~-~~~~~Y 224 (408)
..++|.+.++.....+.+. +.|||++|.|++..... +....|
T Consensus 92 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y 171 (317)
T cd06600 92 QNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLY 171 (317)
T ss_pred CCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchh
Confidence 0357778888876666654 99999999999864321 112234
Q ss_pred H-----HHHHHHHh---cCCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHH
Q 015338 225 P-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (408)
Q Consensus 225 ~-----~m~~AL~~---~Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~ 279 (408)
. ...+++++ ..|+++++-+.+... ..++-.| +.|+..+|+.+...+.
T Consensus 172 ~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L~~~i~ 226 (317)
T cd06600 172 GLYEAMATAEGFRTSHPRNRIFILTRSGFAGS------QKYAAIW--TGDNTASWDDLKLSIP 226 (317)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEecccccc------CCccceE--CCcccccHHHHHHHHH
Confidence 2 23344443 357888886654321 2455556 7899999998776654
No 25
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.08 E-value=4.4e-09 Score=105.25 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc-
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT- 182 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~- 182 (408)
.-+++.+++.++.+.+.++ .++.|+||..|+...+ .|+++.|+++||+ ++.+++++|++|+|+-+|+.|....
T Consensus 20 y~~~~ev~~~~~~~~~~~i---P~d~i~lD~~~~~~~~--~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i~P~v~~~ 93 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGI---PLDVIVQDWFYWPKQG--WGEWKFDPERFPD-PKAMVRELHEMNAELMISIWPTFGPE 93 (319)
T ss_pred CCCHHHHHHHHHHHHHhCC---CccEEEEechhhcCCC--ceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEecCCcCCC
Confidence 3599999999999988554 4899999988876321 2589999999998 9999999999999999999886311
Q ss_pred -----------------------------c----CCCccchhhHH-hHHHHHHHcCCcEEEeecCCCCCCC---------
Q 015338 183 -----------------------------C----QVRPGSLFHEK-DDAPLFASWGVDYLKYDNCFNLGIE--------- 219 (408)
Q Consensus 183 -----------------------------c----~~~Pgs~~~~~-~~~~~~~~wGvdylK~D~~~~~~~~--------- 219 (408)
+ .++|.+.++.. ...+.+.+.|||++|.|++......
T Consensus 94 ~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~ 173 (319)
T cd06591 94 TENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFGLDNYR 173 (319)
T ss_pred ChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCcccccCcc
Confidence 0 35777888764 4445678999999999998532100
Q ss_pred --------cccccH-----HHHHHHHhc---CCCceEeeCCCCCCChhhhhhhccc-eeeecCCCCCChHHHHHHHHh
Q 015338 220 --------PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWASMTSIADI 280 (408)
Q Consensus 220 --------~~~~Y~-----~m~~AL~~~---Gr~i~~s~c~~g~~~p~~w~~~~~n-~wRis~Di~~~W~~~~~~~~~ 280 (408)
....|. ...+++++. .|+++++-+.+.. ...|+. .| +.|+..+|+.+...+..
T Consensus 174 ~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~G------sqry~~~~W--~GD~~s~w~~L~~~i~~ 243 (319)
T cd06591 174 YHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAG------SQRYGALVW--SGDIDSSWETLRRQIAA 243 (319)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccc------cccccCcee--CCCccccHHHHHHHHHH
Confidence 012332 233445443 4788777543321 024553 56 58999999987766643
No 26
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=99.08 E-value=4.4e-09 Score=105.85 Aligned_cols=159 Identities=15% Similarity=0.191 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc--
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT-- 182 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~-- 182 (408)
-|++++++.++.+.+.++. ++.|.||..|+. ..++++.|+++||+ .+.+++.||++|+|+.+++.|....
T Consensus 21 ~~~~ev~~v~~~~r~~~IP---~D~i~lDidy~~----~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~i~P~i~~g~ 92 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIP---LDGLHVDVDFQD----NYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTNITPVISYGG 92 (332)
T ss_pred CCHHHHHHHHHHHHHcCCC---CceEEEcCchhc----CCCceeecCCCCCC-HHHHHHHHHHCCCeEEEEecCceecCc
Confidence 5899999999999885554 899999999986 35789999999999 9999999999999999999996421
Q ss_pred -----c----CCCccchhhHHhHHHHHHHcCCcEEEeecCCCCC---------C--------C-------------cccc
Q 015338 183 -----C----QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLG---------I--------E-------------PKKR 223 (408)
Q Consensus 183 -----c----~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~---------~--------~-------------~~~~ 223 (408)
+ .++|.+.+|.....+.|.+.|||+++.|++.... . . ....
T Consensus 93 ~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~ 172 (332)
T cd06601 93 GLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNL 172 (332)
T ss_pred cCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhh
Confidence 1 4678888888777788888999999999874210 0 0 0111
Q ss_pred cH-----HHHHHHHh-----cCCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHH
Q 015338 224 YP-----PMRDALNE-----TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (408)
Q Consensus 224 Y~-----~m~~AL~~-----~Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~ 279 (408)
|. +..+++++ ..||++++-+.+... ..|+..| +.|+..+|+.+...+.
T Consensus 173 Y~~~~~~a~~e~~~~~~~~~~~RpfiltRS~~aGs------qrY~~~W--sGDn~stW~~L~~si~ 230 (332)
T cd06601 173 YSYNLHKATWHGLNNLNARKNKRNFIIGRGSYAGM------QRFAGLW--TGDNSSSWDFLQINIA 230 (332)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcCcc------CCcCcee--CCCcccCHHHHHHHHH
Confidence 21 33344432 257888876544221 2566677 7999999998776653
No 27
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.07 E-value=1.5e-09 Score=112.60 Aligned_cols=161 Identities=22% Similarity=0.306 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c 183 (408)
.-|++.+++.++.+.+.++ .++.++||++|+. ..+++..|+++||+ ++.+++.+|++|+|+++|+.|....+
T Consensus 39 ~~~~~~v~~~i~~~~~~~i---P~d~~~iD~~~~~----~~~~f~~d~~~FPd-~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGI---PLDVIWIDDDYQD----GYGDFTWDPERFPD-PKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT-----EEEEEE-GGGSB----TTBTT-B-TTTTTT-HHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CCCHHHHHHHHHHHHHcCC---Cccceeccccccc----cccccccccccccc-hHHHHHhHhhCCcEEEEEeecccCCC
Confidence 3569999999999988544 4899999999987 34578999999997 99999999999999999998852110
Q ss_pred --------------------------------------CCCccchhhHHhHHHHHHHc-CCcEEEeecCCCCC-------
Q 015338 184 --------------------------------------QVRPGSLFHEKDDAPLFASW-GVDYLKYDNCFNLG------- 217 (408)
Q Consensus 184 --------------------------------------~~~Pgs~~~~~~~~~~~~~w-GvdylK~D~~~~~~------- 217 (408)
.++|.+.+++....+.+.+. |||++|.|++....
T Consensus 111 ~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~ 190 (441)
T PF01055_consen 111 SPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTL 190 (441)
T ss_dssp TTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSB
T ss_pred CCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccC
Confidence 35677788886666666666 99999999965432
Q ss_pred -C-----C------cccccH-----HHHHHHHh---cCCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHH
Q 015338 218 -I-----E------PKKRYP-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSI 277 (408)
Q Consensus 218 -~-----~------~~~~Y~-----~m~~AL~~---~Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~ 277 (408)
. . ....|. ...+++++ ..|+++++-+.|.. ...++..| +.|+..+|+.+...
T Consensus 191 ~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G------~qr~~~~w--~GD~~s~w~~L~~~ 262 (441)
T PF01055_consen 191 PEDAVHHDGYSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAG------SQRYGGHW--SGDNSSSWDGLRSS 262 (441)
T ss_dssp CTTEECTTECEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETT------GGGTCEEE--ECSSBSSHHHHHHH
T ss_pred cccceecCCCCchheeccccccchhhhhhhhhhccCCCCcceeecccCCC------CCccceee--cccccccHHHHHHH
Confidence 0 0 122332 34455554 45777777543321 12456666 78999999988776
Q ss_pred HHh
Q 015338 278 ADI 280 (408)
Q Consensus 278 ~~~ 280 (408)
+..
T Consensus 263 i~~ 265 (441)
T PF01055_consen 263 IPA 265 (441)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 28
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.98 E-value=1.8e-08 Score=101.69 Aligned_cols=170 Identities=19% Similarity=0.245 Sum_probs=113.3
Q ss_pred chhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCC------------CC-----CCCeeec-CCCCCCCH
Q 015338 97 SWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR------------DL-----KGQLVPD-TITFPSGI 158 (408)
Q Consensus 97 SW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~r------------d~-----~G~~~~d-~~~FP~Gl 158 (408)
-|..-+...|++++++.|+.+.+.++. ++.|.||+ |+...- |. .++...+ .++||+ .
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP---~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPd-p 87 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIP---VTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPN-P 87 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCC---eeEEEEec-ccCcceeeeeccchhcccccCCcceecccccCccccCCC-H
Confidence 455555568999999999999886555 89999995 876210 11 1333444 368998 9
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccc---------------------------------------c----CCCccchhhHHh
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFT---------------------------------------C----QVRPGSLFHEKD 195 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~---------------------------------------c----~~~Pgs~~~~~~ 195 (408)
+.|+++||++|+|+-+|+.|.... | .++|.+.++...
T Consensus 88 ~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~ 167 (340)
T cd06597 88 KGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWME 167 (340)
T ss_pred HHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHH
Confidence 999999999999999999884210 1 246677777766
Q ss_pred HHHHHH-HcCCcEEEeecCCCC---------CCCc---ccccH-----HHHHHHHhcC-CCceEeeCCCCCCChhhhhhh
Q 015338 196 DAPLFA-SWGVDYLKYDNCFNL---------GIEP---KKRYP-----PMRDALNETG-CSIFYSLCEWGVDDPALWAGK 256 (408)
Q Consensus 196 ~~~~~~-~wGvdylK~D~~~~~---------~~~~---~~~Y~-----~m~~AL~~~G-r~i~~s~c~~g~~~p~~w~~~ 256 (408)
..+.+. +.|||.+|.|++... +... ...|. .+.+++++.+ |+++++-+.+... ..
T Consensus 168 ~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~Gs------qr 241 (340)
T cd06597 168 KRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTGA------QA 241 (340)
T ss_pred HHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCcc------CC
Confidence 666655 799999999987432 0011 12232 3444455444 7777775544211 24
Q ss_pred ccceeeecCCCCCChHHHHHHHH
Q 015338 257 VGNSWRTTGDINDTWASMTSIAD 279 (408)
Q Consensus 257 ~~n~wRis~Di~~~W~~~~~~~~ 279 (408)
++-.| +.|+..+|+.+...+.
T Consensus 242 y~~~W--sGD~~s~W~~L~~~i~ 262 (340)
T cd06597 242 HGIFW--AGDENSTFGAFRWSVF 262 (340)
T ss_pred Cccee--cCCCCCCHHHHHHHHH
Confidence 55566 7899999998776654
No 29
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.97 E-value=7.8e-08 Score=96.27 Aligned_cols=160 Identities=18% Similarity=0.309 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCC-----CeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG-----QLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G-----~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~ 180 (408)
++++|++.++.+.+.++. ++.|.|| .|+...-+..| +++.|+++||+ .+.|+++||++|+|+-+|+.|..
T Consensus 21 s~~~v~~~~~~~~~~~iP---~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i~P~v 95 (317)
T cd06594 21 GTDKVLEALEKARAAGVK---VAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYINPYL 95 (317)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEc-cccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEecCce
Confidence 999999999999885555 7899999 58642112223 47899999998 99999999999999999999963
Q ss_pred cc--------------------------------c----CCCccchhhHHhHHHH-HHHcCCcEEEeecCCCCCC-----
Q 015338 181 FT--------------------------------C----QVRPGSLFHEKDDAPL-FASWGVDYLKYDNCFNLGI----- 218 (408)
Q Consensus 181 ~~--------------------------------c----~~~Pgs~~~~~~~~~~-~~~wGvdylK~D~~~~~~~----- 218 (408)
.. | .++|.+.++....++. +.+.|||.+|.|++.....
T Consensus 96 ~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~ 175 (317)
T cd06594 96 ADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYLPFDAVLH 175 (317)
T ss_pred ecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCCCCcceec
Confidence 10 0 3567888888655554 4889999999999754211
Q ss_pred ---C---cccccH-----HHHHHHHhc---CCCceEeeCCCCCCChhhhhhhccc-eeeecCCCCCChH---HHHHHH
Q 015338 219 ---E---PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWA---SMTSIA 278 (408)
Q Consensus 219 ---~---~~~~Y~-----~m~~AL~~~---Gr~i~~s~c~~g~~~p~~w~~~~~n-~wRis~Di~~~W~---~~~~~~ 278 (408)
+ ....|. ...+++++. +|+++++-+.+.. ...++. .| +.|+..+|+ .+...+
T Consensus 176 ~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~G------sqry~~~~W--sGD~~s~W~~~~~L~~~i 245 (317)
T cd06594 176 SGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTG------SQKYSTLFW--AGDQMVSWDAHDGLKSVV 245 (317)
T ss_pred CCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccc------ccccccccc--CCCCCCCCcCcccHHHHH
Confidence 1 112232 223344433 5778777554321 124554 46 689999997 355544
No 30
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=98.95 E-value=9.5e-09 Score=103.73 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCH--HHHHHHHHHcCCeEEEEeeCCccc
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGI--KALADYVHGKGLKLGIYSDAGVFT 182 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Gl--k~l~~~ih~~G~k~Glw~~pg~~~ 182 (408)
-+++.+++.++.+.+.++. ++.|.||.+|+. ..++++.|+++||+ . +.+++.||++|+|+-+|+.|....
T Consensus 21 ~~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~v~~ 92 (339)
T cd06602 21 KNVDEVKEVVENMRAAGIP---LDVQWNDIDYMD----RRRDFTLDPVRFPG-LKMPEFVDELHANGQHYVPILDPAISA 92 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECccccc----CccceecccccCCC-ccHHHHHHHHHHCCCEEEEEEeCcccc
Confidence 5899999999999886655 889999999986 35789999999998 7 999999999999999999885311
Q ss_pred -------------------------------c---------CCCccchhhHHhHHHH-HHHcCCcEEEeecCCCCCC-Cc
Q 015338 183 -------------------------------C---------QVRPGSLFHEKDDAPL-FASWGVDYLKYDNCFNLGI-EP 220 (408)
Q Consensus 183 -------------------------------c---------~~~Pgs~~~~~~~~~~-~~~wGvdylK~D~~~~~~~-~~ 220 (408)
| .++|.+.++.....+. +.+.|||++|.|++..... ..
T Consensus 93 ~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~ 172 (339)
T cd06602 93 NEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNFYDV 172 (339)
T ss_pred CcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchHhhh
Confidence 0 2466677777666655 5679999999999854321 11
Q ss_pred ccccH-----HHHHHHHh-c-CCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHHHHHH
Q 015338 221 KKRYP-----PMRDALNE-T-GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (408)
Q Consensus 221 ~~~Y~-----~m~~AL~~-~-Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~~~~~ 279 (408)
...|. ...+++++ . .|+++++-+.+... ..++-.| +.|+..+|+.+..++.
T Consensus 173 hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~w--~GD~~s~W~~L~~~i~ 230 (339)
T cd06602 173 HNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGS------GRYAGHW--LGDNASTWEDLRYSII 230 (339)
T ss_pred cchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccc------cccceeE--CCCccCCHHHHHHHHH
Confidence 22332 23344543 3 36777765543221 2355566 7899999998776654
No 31
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.92 E-value=9.9e-08 Score=96.26 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=115.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcc
Q 015338 102 ACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF 181 (408)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~ 181 (408)
+..-|++++++.|+.+.+.++. ++.|.||..|+. ..++++.|+++||+ .+.+++.+|++|+|+-+|+.|...
T Consensus 18 ~~y~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~mi~~L~~~G~k~~~~~~P~v~ 89 (339)
T cd06603 18 WNYKDQEDVKEVDAGFDEHDIP---YDVIWLDIEHTD----GKRYFTWDKKKFPD-PEKMQEKLASKGRKLVTIVDPHIK 89 (339)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC---ceEEEEChHHhC----CCCceEeCcccCCC-HHHHHHHHHHCCCEEEEEecCcee
Confidence 3346899999999999886555 899999999976 34678999999998 999999999999999999988521
Q ss_pred c---------------------------------c----CCCccchhhHHhHHHHHH---HcCCcEEEeecCCCCCC---
Q 015338 182 T---------------------------------C----QVRPGSLFHEKDDAPLFA---SWGVDYLKYDNCFNLGI--- 218 (408)
Q Consensus 182 ~---------------------------------c----~~~Pgs~~~~~~~~~~~~---~wGvdylK~D~~~~~~~--- 218 (408)
. | .++|++.++.....+.+. +.|+++++.|++.....
T Consensus 90 ~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~ 169 (339)
T cd06603 90 RDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGP 169 (339)
T ss_pred cCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCC
Confidence 0 1 357888888876665544 47999999998753210
Q ss_pred --------------Cc---ccccH-----HHHHHHHhc----CCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChH
Q 015338 219 --------------EP---KKRYP-----PMRDALNET----GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWA 272 (408)
Q Consensus 219 --------------~~---~~~Y~-----~m~~AL~~~----Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~ 272 (408)
.+ ...|. ...+++.+. .|+++++-+.+... ..++..| +.|+..+|+
T Consensus 170 ~~~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~ 241 (339)
T cd06603 170 ELTMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGS------QRYAAIW--TGDNTATWE 241 (339)
T ss_pred CCcCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccc------cceeeee--CCCccCCHH
Confidence 00 12232 234455432 47877775544221 2455566 789999999
Q ss_pred HHHHHHH
Q 015338 273 SMTSIAD 279 (408)
Q Consensus 273 ~~~~~~~ 279 (408)
.+..++.
T Consensus 242 ~L~~~i~ 248 (339)
T cd06603 242 HLKISIP 248 (339)
T ss_pred HHHHHHH
Confidence 8876664
No 32
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.88 E-value=3.6e-08 Score=108.87 Aligned_cols=170 Identities=20% Similarity=0.251 Sum_probs=126.2
Q ss_pred eEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCC-ccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCe
Q 015338 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDC-WSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLK 171 (408)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDG-W~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k 171 (408)
+| +.|-..+..-+|+.+.+.++.+.+ ++..++.|++|.. |.. ..+.++.|+.+||+ .+.|++++|++|+|
T Consensus 266 ~G-~~~~~~~~~~~e~~v~~~i~~~~~---~~IP~d~~~lD~~~~~~----~~~~F~wd~~~FP~-pk~mi~~l~~~Gik 336 (772)
T COG1501 266 LG-WLWTSRYTYYDEDEVLEFIDEMRE---RDIPLDVFVLDIDFWMD----NWGDFTWDPDRFPD-PKQMIAELHEKGIK 336 (772)
T ss_pred cC-CCceeccccccHHHHHHHHhhccc---ccCcceEEEEeehhhhc----cccceEECcccCCC-HHHHHHHHHhcCce
Confidence 45 244444556789999999999976 5556899999975 654 45779999999999 99999999999999
Q ss_pred EEEEeeCCccc--------------------------c---------CCCccchhhHH-hHHHHHHHcCCcEEEeecCCC
Q 015338 172 LGIYSDAGVFT--------------------------C---------QVRPGSLFHEK-DDAPLFASWGVDYLKYDNCFN 215 (408)
Q Consensus 172 ~Glw~~pg~~~--------------------------c---------~~~Pgs~~~~~-~~~~~~~~wGvdylK~D~~~~ 215 (408)
+-+|..|.... | .++|.++++.. ...+.+.+.|||.++.|++-.
T Consensus 337 l~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp 416 (772)
T COG1501 337 LIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEP 416 (772)
T ss_pred EEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCC
Confidence 99999995210 1 46899999998 455779999999999999854
Q ss_pred CCC---------C---ccccc-----HHHHHHHHhc---CCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHHHH
Q 015338 216 LGI---------E---PKKRY-----PPMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMT 275 (408)
Q Consensus 216 ~~~---------~---~~~~Y-----~~m~~AL~~~---Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~~~ 275 (408)
.-. + ....| ....+|+++. .|+++|+-|.|... ..++-.| ++|+...|+++.
T Consensus 417 ~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~------Q~~~~~W--sGD~~s~wd~l~ 488 (772)
T COG1501 417 EPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGS------QRYAAHW--SGDNRSSWDSLR 488 (772)
T ss_pred ccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccc------eecccee--CCccccchHHHH
Confidence 321 1 12223 2445666655 58999887654321 1456778 799999999987
Q ss_pred HHHH
Q 015338 276 SIAD 279 (408)
Q Consensus 276 ~~~~ 279 (408)
..+.
T Consensus 489 ~si~ 492 (772)
T COG1501 489 ESIP 492 (772)
T ss_pred hhHH
Confidence 7664
No 33
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.73 E-value=3.4e-07 Score=102.64 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc--
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT-- 182 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~-- 182 (408)
-+++.+++.++.+.+.++. ++.|.+|..|... .+.++.|+++||+ .+.|++.+|++|+|.-.+++|+...
T Consensus 198 ~sq~eV~eva~~fre~~IP---~DvIwlDidYm~g----~~~FTwD~~rFPd-P~~mv~~Lh~~G~kvv~iidPgI~~d~ 269 (978)
T PLN02763 198 ESAKRVAEIARTFREKKIP---CDVVWMDIDYMDG----FRCFTFDKERFPD-PKGLADDLHSIGFKAIWMLDPGIKAEE 269 (978)
T ss_pred CCHHHHHHHHHHHHHcCCC---ceEEEEehhhhcC----CCceeECcccCCC-HHHHHHHHHHCCCEEEEEEcCCCccCC
Confidence 5799999999999885544 8999999999753 4568999999998 9999999999999997777885310
Q ss_pred -------------------------------c----CCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCC---------
Q 015338 183 -------------------------------C----QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI--------- 218 (408)
Q Consensus 183 -------------------------------c----~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~--------- 218 (408)
| .++|.+.+|.....+.|.+.|||+++.|++-....
T Consensus 270 gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~ 349 (978)
T PLN02763 270 GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPE 349 (978)
T ss_pred CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCc
Confidence 1 24677888888888888899999999999753210
Q ss_pred ------C-----------cccccH-----HHHHHHHh---cCCCceEeeCCCCCCChhhhhhhccceeeecCCCCCChHH
Q 015338 219 ------E-----------PKKRYP-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWAS 273 (408)
Q Consensus 219 ------~-----------~~~~Y~-----~m~~AL~~---~Gr~i~~s~c~~g~~~p~~w~~~~~n~wRis~Di~~~W~~ 273 (408)
. ....|. +..+++++ ..||++++-+.+... ..|+-.| +.|+..+|+.
T Consensus 350 ~~~h~g~~~~gG~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGs------QRYaa~W--tGDn~SsWe~ 421 (978)
T PLN02763 350 TNIHRGDEELGGVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGS------QRYAATW--TGDNLSNWEH 421 (978)
T ss_pred cccccCCcccCCccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcC------CCCceEE--CCCccCCHHH
Confidence 0 011221 22334433 258988876544221 2456677 7999999998
Q ss_pred HHHHHH
Q 015338 274 MTSIAD 279 (408)
Q Consensus 274 ~~~~~~ 279 (408)
+...+.
T Consensus 422 L~~sI~ 427 (978)
T PLN02763 422 LHMSIP 427 (978)
T ss_pred HHHHHH
Confidence 765543
No 34
>PRK10426 alpha-glucosidase; Provisional
Probab=98.67 E-value=5.9e-07 Score=97.72 Aligned_cols=160 Identities=17% Similarity=0.247 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCC-----CCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK-----GQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~-----G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~ 180 (408)
+++++++.++.+.+.+++ ++.|.|| .|+....... ++|+.|+++||+ .+.+++.+|++|+|+-+|+.|..
T Consensus 219 ~~~~v~~v~~~~r~~~IP---~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i~P~v 293 (635)
T PRK10426 219 GTEVVQKKLDTMRNAGVK---VNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYINPYL 293 (635)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEe-cccccccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEEcCcc
Confidence 578899999999885554 7889998 4986322222 467899999998 99999999999999999999952
Q ss_pred c-------------------------------cc----CCCccchhhHHhHH-HHHHHcCCcEEEeecCCCCC-------
Q 015338 181 F-------------------------------TC----QVRPGSLFHEKDDA-PLFASWGVDYLKYDNCFNLG------- 217 (408)
Q Consensus 181 ~-------------------------------~c----~~~Pgs~~~~~~~~-~~~~~wGvdylK~D~~~~~~------- 217 (408)
. .| .++|.+.++....+ +.+.+.|||.+|.|++-...
T Consensus 294 ~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~ 373 (635)
T PRK10426 294 ASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHN 373 (635)
T ss_pred CCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeC
Confidence 1 01 46788899886555 56889999999999975321
Q ss_pred -CC---cccccH-----HHHHHHHhc---CCCceEeeCCCCCCChhhhhhhccc-eeeecCCCCCChH---HHHHHH
Q 015338 218 -IE---PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWA---SMTSIA 278 (408)
Q Consensus 218 -~~---~~~~Y~-----~m~~AL~~~---Gr~i~~s~c~~g~~~p~~w~~~~~n-~wRis~Di~~~W~---~~~~~~ 278 (408)
.. ....|. ...+++++. +|+++++-+.+.. ...|+. .| +.|+..+|+ .+...+
T Consensus 374 g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aG------sQry~~~~W--sGD~~ssW~~~d~L~~~I 442 (635)
T PRK10426 374 GVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTG------SQKYSTLFW--AGDQNVDWSLDDGLASVV 442 (635)
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCC------cCCcccccc--CCCCCCcCcChhHHHHHH
Confidence 11 122332 234455443 4788877544321 124554 57 689999995 455444
No 35
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00012 Score=80.34 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=92.2
Q ss_pred CceEEechhhcC--CCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc
Q 015338 91 PQMGWNSWNFFA--CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK 168 (408)
Q Consensus 91 pP~GwnSW~~~~--~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~ 168 (408)
+|=.|+-|..+. ...+.+.+++.++.+.+ +..+++.+++|+-|+. .+++.++|+.+||. ++.+++.||+.
T Consensus 292 m~pYWslGf~~~RwgY~nls~~~dvv~~~~~---agiPld~~~~DiDyMd----~ykDFTvd~~~fp~-~~~fv~~Lh~~ 363 (805)
T KOG1065|consen 292 MPPYWSLGFQLCRWGYKNLSVVRDVVENYRA---AGIPLDVIVIDIDYMD----GYKDFTVDKVWFPD-LKDFVDDLHAR 363 (805)
T ss_pred CCchhhccceecccccccHHHHHHHHHHHHH---cCCCcceeeeehhhhh----cccceeeccccCcc-hHHHHHHHHhC
Confidence 344588887665 57899999999999977 4455789999999987 46779999999998 99999999999
Q ss_pred CCeEEEEeeCCccc------------c--------------------------CCCccchhhHHhHHHHHH-HcCCcEEE
Q 015338 169 GLKLGIYSDAGVFT------------C--------------------------QVRPGSLFHEKDDAPLFA-SWGVDYLK 209 (408)
Q Consensus 169 G~k~Glw~~pg~~~------------c--------------------------~~~Pgs~~~~~~~~~~~~-~wGvdylK 209 (408)
|+|.-++++|+..+ | .++|.+..+....++.|. +.+||.++
T Consensus 364 G~kyvliidP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~w 443 (805)
T KOG1065|consen 364 GFKYVLIIDPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFW 443 (805)
T ss_pred CCeEEEEeCCccccCccchhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceE
Confidence 99999999996421 0 134555666665666665 78999999
Q ss_pred eecCC
Q 015338 210 YDNCF 214 (408)
Q Consensus 210 ~D~~~ 214 (408)
+|.+.
T Consensus 444 iDmnE 448 (805)
T KOG1065|consen 444 IDMNE 448 (805)
T ss_pred EECCC
Confidence 99954
No 36
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.81 E-value=0.0062 Score=59.38 Aligned_cols=177 Identities=19% Similarity=0.301 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~ 184 (408)
-.+..++++||.-++..++ ..+|+-+||.... . ..|+.++++++++|++.|||++-+
T Consensus 42 ~~~~~a~~~~~~y~~~~~p---lgw~lpndgyg~~------y---------~~l~~~~~~~~~~g~~~glwt~~~----- 98 (261)
T cd06596 42 STTDDARKVADKYKENDMP---LGWMLPNDGYGCG------Y---------ENLKEVVDYLHANGVETGLWTQSG----- 98 (261)
T ss_pred cchhhHHHHHHHHHhcCCC---ceeeccCCCCcch------H---------HHHHHHHHHHHHcCCccccccccc-----
Confidence 3455678888888775444 5677777777552 1 249999999999999999997643
Q ss_pred CCccchhhHHhHHHHHHHcCCcEEEeecCCCCCC-C-cccccHHHHHHHHh--cCCCceEeeCCCCCCChhhhhhhccce
Q 015338 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI-E-PKKRYPPMRDALNE--TGCSIFYSLCEWGVDDPALWAGKVGNS 260 (408)
Q Consensus 185 ~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~-~-~~~~Y~~m~~AL~~--~Gr~i~~s~c~~g~~~p~~w~~~~~n~ 260 (408)
+....+....-|+.++|+|--..+.- . ....-+...+++.+ ..||++++-|.|... ..++-.
T Consensus 99 --------l~~~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGs------QRy~~~ 164 (261)
T cd06596 99 --------LRDIAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAGT------QRYAGI 164 (261)
T ss_pred --------hhhhhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCcccc------CCCCCc
Confidence 23445556778999999998654321 0 00111223334433 358999998766431 245566
Q ss_pred eeecCCCCCChHHHHHHHHhhcccccccCCCCc-CCCCccccCCCCCChhhhHHHHHHHHHhcCceee
Q 015338 261 WRTTGDINDTWASMTSIADINDKWASYAGPGGW-NDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLI 327 (408)
Q Consensus 261 wRis~Di~~~W~~~~~~~~~~~~~~~~~gpg~w-nDpDmL~vg~~~lT~~E~rt~~slwai~gsPL~i 327 (408)
| +.|+..+|+.+...+...... ..+|...| .|.+=+. ++ + .|--++-.-|+++ .|++.
T Consensus 165 W--sGD~~stWe~Lr~sI~~~L~~-gLsG~p~~G~DIGGF~---g~-~-~EL~vRW~Q~gaF-~P~~R 223 (261)
T cd06596 165 W--TGDQSGSWEYIRFHIPTYIGS-GLSGQPNTTSDVDGIF---GG-S-PETYTRDLQWKAF-TPVLM 223 (261)
T ss_pred c--CCCCcCcHHHHHHHHHHHHHH-HhcCCCcCccccCcCC---CC-C-HHHHHHHHHHHHh-hhhhh
Confidence 7 799999999887665432111 23343333 3433211 12 3 4544444445555 67764
No 37
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.54 E-value=0.26 Score=53.91 Aligned_cols=127 Identities=18% Similarity=0.286 Sum_probs=79.0
Q ss_pred CCHHHHHHHH-HHHHHcCCccCCceEEEe--------CCCccCCCCCCCCCeeecCCCCC--CCHHHHHHHHHHcCCeEE
Q 015338 105 ISETIIKETA-DALVSTGLAELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLG 173 (408)
Q Consensus 105 i~e~~i~~~a-d~~~~~gl~~~G~~~~~i--------DDGW~~~~rd~~G~~~~d~~~FP--~Glk~l~~~ih~~G~k~G 173 (408)
-+...|.+.. +.+ +++|++.|.| +..|- .+..+...+++ +|. ..||.|++.+|++||++=
T Consensus 153 g~~~~i~~~l~dyl-----~~LGvt~i~L~Pi~e~~~~~~wG---Y~~~~y~~~~~-~~Gt~~dlk~lV~~~H~~Gi~Vi 223 (613)
T TIGR01515 153 LSYRELADQLIPYV-----KELGFTHIELLPVAEHPFDGSWG---YQVTGYYAPTS-RFGTPDDFMYFVDACHQAGIGVI 223 (613)
T ss_pred CCHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCC---CCcccCccccc-ccCCHHHHHHHHHHHHHCCCEEE
Confidence 4556666654 777 7899999887 22231 12223344553 554 369999999999999988
Q ss_pred EEeeCCc------------------ccc---------------CCCccchhhHHhHHHHH-HHcCCcEEEeecCCCC---
Q 015338 174 IYSDAGV------------------FTC---------------QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCFNL--- 216 (408)
Q Consensus 174 lw~~pg~------------------~~c---------------~~~Pgs~~~~~~~~~~~-~~wGvdylK~D~~~~~--- 216 (408)
|-+-+.. ..+ ..+|.+++|+...++.+ .++|||.+++|.....
T Consensus 224 lD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~ 303 (613)
T TIGR01515 224 LDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYL 303 (613)
T ss_pred EEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhh
Confidence 7754320 000 13567778887666665 5799999999974210
Q ss_pred ------C------------CCcccccHHHHHHHHhcCCCceE
Q 015338 217 ------G------------IEPKKRYPPMRDALNETGCSIFY 240 (408)
Q Consensus 217 ------~------------~~~~~~Y~~m~~AL~~~Gr~i~~ 240 (408)
+ .+..+..+.+.+.+++..+++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~l 345 (613)
T TIGR01515 304 DYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVT 345 (613)
T ss_pred ccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEE
Confidence 0 01123345677777777776544
No 38
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=93.12 E-value=0.87 Score=45.69 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCC--C----CC----CCCeeecCCCCCCCHHHHHHHHHHcCCeEEEE
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPL--R----DL----KGQLVPDTITFPSGIKALADYVHGKGLKLGIY 175 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~--r----d~----~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw 175 (408)
+++.+.+.++.+ +++|+..|.++=-+.... . .. .|....+| -| +=|+.+++..|++||++==|
T Consensus 17 ~~~~~~~~l~~l-----~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~p-g~-DpL~~~I~eaHkrGlevHAW 89 (311)
T PF02638_consen 17 SKEQIDEMLDDL-----KSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDP-GF-DPLEFMIEEAHKRGLEVHAW 89 (311)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCC-Cc-cHHHHHHHHHHHcCCEEEEE
Confidence 788899999988 556676666653332110 0 00 01111111 01 12899999999999999888
Q ss_pred eeCCc-----------------------------------cccCCCccchhhHHhHH-HHHHHcCCcEEEeecCC
Q 015338 176 SDAGV-----------------------------------FTCQVRPGSLFHEKDDA-PLFASWGVDYLKYDNCF 214 (408)
Q Consensus 176 ~~pg~-----------------------------------~~c~~~Pgs~~~~~~~~-~~~~~wGvdylK~D~~~ 214 (408)
+..+. .-|+++|++++|+...+ +.++.+.||.|-+|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~ 164 (311)
T PF02638_consen 90 FRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYF 164 (311)
T ss_pred EEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccc
Confidence 74321 01267889999997655 55679999999999543
No 39
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=92.32 E-value=1.1 Score=45.30 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeec-----------CCCCCCCHHHHHHHHHHcCCeEEE
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPD-----------TITFPSGIKALADYVHGKGLKLGI 174 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d-----------~~~FP~Glk~l~~~ih~~G~k~Gl 174 (408)
+++.+.+.++.+ ++-|.+.++|| -.|++|.+..+ ...+...++.|++.+|++|+-+=-
T Consensus 11 ~~~~~~~~~~~i-----~~t~lNavVID------vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IA 79 (316)
T PF13200_consen 11 SPERLDKLLDLI-----KRTELNAVVID------VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIA 79 (316)
T ss_pred CHHHHHHHHHHH-----HhcCCceEEEE------EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEE
Confidence 457788888888 55567788987 34555655432 122223599999999999987665
Q ss_pred EeeCCc----------------------------cccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCC
Q 015338 175 YSDAGV----------------------------FTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLG 217 (408)
Q Consensus 175 w~~pg~----------------------------~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~ 217 (408)
++..+. ..|+.++.+.+|.-..++..++.|||-|-+|+.-.+.
T Consensus 80 RIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~ 150 (316)
T PF13200_consen 80 RIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFPD 150 (316)
T ss_pred EEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecCC
Confidence 553321 1245667788999889999999999999999986664
No 40
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=91.70 E-value=2.6 Score=43.64 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcc-------------ccCCCccchhhH----HhHHHHHHHcCCcEEEeecCCCCCCCc
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVF-------------TCQVRPGSLFHE----KDDAPLFASWGVDYLKYDNCFNLGIEP 220 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~-------------~c~~~Pgs~~~~----~~~~~~~~~wGvdylK~D~~~~~~~~~ 220 (408)
++.|++.+|+.|||||+|+.+-.. .+...|...+|+ .+..+++..+|-|.|=+|+.......
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~~- 208 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPDD- 208 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCccc-
Confidence 899999999999999999976211 112234445565 45667778899999999986432111
Q ss_pred ccccHHHHHHHHhcCCCc---eEe
Q 015338 221 KKRYPPMRDALNETGCSI---FYS 241 (408)
Q Consensus 221 ~~~Y~~m~~AL~~~Gr~i---~~s 241 (408)
......+.+-+....+.+ +++
T Consensus 209 ~~~~~~l~~~~~~~qP~~~~vvvn 232 (384)
T smart00812 209 YWRSKEFLAWLYNLSPVKDTVVVN 232 (384)
T ss_pred hhcHHHHHHHHHHhCCCCceEEEE
Confidence 112345555566555554 554
No 41
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=87.35 E-value=3.3 Score=42.08 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCC--c------c-------chhhH-----HhHHHHHHHcCCcEEEeecCCCCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVR--P------G-------SLFHE-----KDDAPLFASWGVDYLKYDNCFNLG 217 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~--P------g-------s~~~~-----~~~~~~~~~wGvdylK~D~~~~~~ 217 (408)
+++|++.+++.|||+|+|+.+.-..-+.. + + ...|+ .+.-+++..+.+|.|=+|......
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~ 219 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDP 219 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCC
T ss_pred HHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCcc
Confidence 79999999999999999999863111110 0 0 11222 344556677888888888876532
Q ss_pred CCcccccHHHHHHHHhcCCCceEee
Q 015338 218 IEPKKRYPPMRDALNETGCSIFYSL 242 (408)
Q Consensus 218 ~~~~~~Y~~m~~AL~~~Gr~i~~s~ 242 (408)
.. ...+..+.+.+++..+.+++..
T Consensus 220 ~~-~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 220 DE-DWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp CT-HHHHHHHHHHHHHHSTTSEEEC
T ss_pred cc-ccCHHHHHHHHHHhCCeEEEec
Confidence 11 1223556666777777777764
No 42
>PRK14706 glycogen branching enzyme; Provisional
Probab=86.08 E-value=4.5 Score=44.68 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=54.6
Q ss_pred ccCCceEEEe--------CCCccCCCCCCCCCeeecCCCC--CCCHHHHHHHHHHcCCeEEEEeeCC-------------
Q 015338 123 AELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSDAG------------- 179 (408)
Q Consensus 123 ~~~G~~~~~i--------DDGW~~~~rd~~G~~~~d~~~F--P~Glk~l~~~ih~~G~k~Glw~~pg------------- 179 (408)
+++||..|.| +..|- .+..+...|++ +| |..+|.|++.+|++||++=|=+-+.
T Consensus 178 k~lG~t~velmPv~e~~~~~~wG---Y~~~~~~~~~~-~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d 253 (639)
T PRK14706 178 TYMGYTHVELLGVMEHPFDGSWG---YQVTGYYAPTS-RLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD 253 (639)
T ss_pred HHcCCCEEEccchhcCCCCCCCC---cCccccccccc-ccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC
Confidence 7888887764 22231 11123334442 44 3579999999999999965422110
Q ss_pred -------------cc----cc---CCCccchhhHHhHHHHH-HHcCCcEEEeecC
Q 015338 180 -------------VF----TC---QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (408)
Q Consensus 180 -------------~~----~c---~~~Pgs~~~~~~~~~~~-~~wGvdylK~D~~ 213 (408)
.. ++ .++|.++.|+-..++.+ .+.+||.+.+|..
T Consensus 254 g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav 308 (639)
T PRK14706 254 GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAV 308 (639)
T ss_pred CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeee
Confidence 00 00 24677888887666665 5899999999974
No 43
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=86.04 E-value=7.1 Score=42.24 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeC--------CCccCCCCCCCCCeeecCCCCC--CCHHHHHHHHHHcCCeEEEE
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNID--------DCWSSPLRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGIY 175 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iD--------DGW~~~~rd~~G~~~~d~~~FP--~Glk~l~~~ih~~G~k~Glw 175 (408)
+-..+.+.++.+ +++|+..|.|= .+|. .|......+++ +|- ..+|.|++.+|++||++=|=
T Consensus 109 ~~~gi~~~l~yl-----~~LGv~~i~L~Pi~~~~~~~~~G---Y~~~~~~~~~~-~~G~~~e~k~lV~~aH~~Gi~VilD 179 (542)
T TIGR02402 109 TFDAAIEKLPYL-----ADLGITAIELMPVAQFPGTRGWG---YDGVLPYAPHN-AYGGPDDLKALVDAAHGLGLGVILD 179 (542)
T ss_pred CHHHHHHhhHHH-----HHcCCCEEEeCccccCCCCCCCC---CCccCcccccc-ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456666667777 77888887642 2231 11111223332 332 35999999999999997542
Q ss_pred eeCC--------------------cccc-----CCCc---cchhhHHhHHHHH-HHcCCcEEEeecCCCCC-CCcccccH
Q 015338 176 SDAG--------------------VFTC-----QVRP---GSLFHEKDDAPLF-ASWGVDYLKYDNCFNLG-IEPKKRYP 225 (408)
Q Consensus 176 ~~pg--------------------~~~c-----~~~P---gs~~~~~~~~~~~-~~wGvdylK~D~~~~~~-~~~~~~Y~ 225 (408)
+-+. ...| ..+| .+++|+-..++.+ .++|||.+.+|....-. ....+..+
T Consensus 180 ~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~ 259 (542)
T TIGR02402 180 VVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILE 259 (542)
T ss_pred EccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHH
Confidence 2110 0112 2356 6777776556554 58999999999753321 12233456
Q ss_pred HHHHHHHhcCCC
Q 015338 226 PMRDALNETGCS 237 (408)
Q Consensus 226 ~m~~AL~~~Gr~ 237 (408)
.+++++++..++
T Consensus 260 ~~~~~~~~~~p~ 271 (542)
T TIGR02402 260 ELAREVHELAAE 271 (542)
T ss_pred HHHHHHHHHCCC
Confidence 777788766654
No 44
>PRK10785 maltodextrin glucosidase; Provisional
Probab=84.72 E-value=8.8 Score=41.99 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCC---CCCCCCeeecCCCCCC--CHHHHHHHHHHcCCeEEEEeeC-
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL---RDLKGQLVPDTITFPS--GIKALADYVHGKGLKLGIYSDA- 178 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~---rd~~G~~~~d~~~FP~--Glk~l~~~ih~~G~k~Glw~~p- 178 (408)
=|-+.|.+..|.+ +++|++.|-|=-=..... .+-.-...+|| .|.. .++.|++.+|++|||+=|=.-+
T Consensus 176 GDl~GI~~kLdYL-----~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD~V~N 249 (598)
T PRK10785 176 GDLDGISEKLPYL-----KKLGVTALYLNPIFTAPSVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLDGVFN 249 (598)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEeCCcccCCCCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3678899999999 788888887643332211 11111223453 4432 5999999999999996432111
Q ss_pred ------------------------------------Ccccc-----------CCCccchhhHHh----HHHHHH-H-cCC
Q 015338 179 ------------------------------------GVFTC-----------QVRPGSLFHEKD----DAPLFA-S-WGV 205 (408)
Q Consensus 179 ------------------------------------g~~~c-----------~~~Pgs~~~~~~----~~~~~~-~-wGv 205 (408)
+...| ..+|.+.+|+.. .++.+- + .||
T Consensus 250 H~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~gi 329 (598)
T PRK10785 250 HTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNI 329 (598)
T ss_pred cCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCC
Confidence 00001 135666777742 445443 3 699
Q ss_pred cEEEeecCCCCCC-----CcccccHHHHHHHHhcCCCceEe
Q 015338 206 DYLKYDNCFNLGI-----EPKKRYPPMRDALNETGCSIFYS 241 (408)
Q Consensus 206 dylK~D~~~~~~~-----~~~~~Y~~m~~AL~~~Gr~i~~s 241 (408)
|.+.+|....... ...+..+.+++++++..++.++-
T Consensus 330 DG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~li 370 (598)
T PRK10785 330 DGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVL 370 (598)
T ss_pred cEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEE
Confidence 9999998643211 12244567888888888776554
No 45
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=83.51 E-value=5.3 Score=43.71 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC----------------Cc-------------ccc-----CCCccchhhHHhHHHHHH-
Q 015338 157 GIKALADYVHGKGLKLGIYSDA----------------GV-------------FTC-----QVRPGSLFHEKDDAPLFA- 201 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~p----------------g~-------------~~c-----~~~Pgs~~~~~~~~~~~~- 201 (408)
.+|.|++.+|++||++=|=+-. .. ..| ..+|.+++|+...++.+.
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~ 309 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVK 309 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999996432111 00 012 135677788876666655
Q ss_pred HcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeCCCC
Q 015338 202 SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWG 246 (408)
Q Consensus 202 ~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c~~g 246 (408)
++|||.+.+|..... +.+..+.+++++++..+++++-.-.|.
T Consensus 310 e~~iDGfR~D~~~~~---~~~~~~~~~~~~~~~~p~~~ligE~w~ 351 (605)
T TIGR02104 310 EYNIDGFRFDLMGIH---DIETMNEIRKALNKIDPNILLYGEGWD 351 (605)
T ss_pred HcCCCEEEEechhcC---CHHHHHHHHHHHHhhCCCeEEEEccCC
Confidence 799999999976432 233456777888777776655433343
No 46
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=83.21 E-value=10 Score=40.80 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCC-----eeecCCCCCC--CHHHHHHHHHHcCCeEEEEee
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQ-----LVPDTITFPS--GIKALADYVHGKGLKLGIYSD 177 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~-----~~~d~~~FP~--Glk~l~~~ih~~G~k~Glw~~ 177 (408)
=+-..|.+.+|.+ +++|++.|.|=-=... .....|. ..+|+ +|.. .++.|++.+|++|||+=+=+-
T Consensus 25 Gdl~gi~~~Ldyl-----~~LGv~~i~L~Pi~~~-~~~~~gY~~~dy~~vd~-~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 25 GDFPGLTSKLDYL-----KWLGVDALWLLPFFQS-PLRDDGYDVSDYRAILP-EFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred cCHHHHHHhHHHH-----HHCCCCEEEECCCcCC-CCCCCCCCcccccccCh-hhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4567788888888 7788888876322211 1111222 23453 4532 589999999999999765110
Q ss_pred C------------------------------C---------------c-cc----------c----------CCCccchh
Q 015338 178 A------------------------------G---------------V-FT----------C----------QVRPGSLF 191 (408)
Q Consensus 178 p------------------------------g---------------~-~~----------c----------~~~Pgs~~ 191 (408)
+ + . .. | ..+|.+++
T Consensus 98 ~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~ 177 (539)
T TIGR02456 98 LNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHD 177 (539)
T ss_pred cCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHH
Confidence 0 0 0 00 0 13466777
Q ss_pred hHHhHHHHHHHcCCcEEEeecCCCCC---------CC-cccccHHHHHHHHhcCCCce
Q 015338 192 HEKDDAPLFASWGVDYLKYDNCFNLG---------IE-PKKRYPPMRDALNETGCSIF 239 (408)
Q Consensus 192 ~~~~~~~~~~~wGvdylK~D~~~~~~---------~~-~~~~Y~~m~~AL~~~Gr~i~ 239 (408)
++...++.+.+.|||.+.+|...... .. ..+..+.+++++++..+..+
T Consensus 178 ~l~~~~~~w~~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~ 235 (539)
T TIGR02456 178 AVHDVMRFWLDLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRM 235 (539)
T ss_pred HHHHHHHHHHHcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeE
Confidence 77777788888999999999864320 01 12345667777766554433
No 47
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.07 E-value=11 Score=42.20 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=57.0
Q ss_pred HHHHHHHcCCccCCceEEEeC--------CCccCCCCCCCCCeeecCCCCC--CCHHHHHHHHHHcCCeEEEEeeCCc--
Q 015338 113 TADALVSTGLAELGYDHVNID--------DCWSSPLRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGIYSDAGV-- 180 (408)
Q Consensus 113 ~ad~~~~~gl~~~G~~~~~iD--------DGW~~~~rd~~G~~~~d~~~FP--~Glk~l~~~ih~~G~k~Glw~~pg~-- 180 (408)
.++.+ +++|++.|.|= ..|- .+..|...+++ +|. ..+|.|++.+|++||++=|=+-+..
T Consensus 275 ll~yl-----k~LGvt~I~LmPi~e~~~~~~wG---Y~~~~~~a~~~-~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 275 LIPYV-----QQLGFTHIELLPITEHPFGGSWG---YQPLGLYAPTA-RHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred HHHHH-----HHcCCCEEEECccccCCCCCCCC---CCCCcCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 35666 77888887652 2231 12223344553 554 3699999999999999755332210
Q ss_pred ----------------------------ccc---CCCccchhhHHhHHHH-HHHcCCcEEEeecC
Q 015338 181 ----------------------------FTC---QVRPGSLFHEKDDAPL-FASWGVDYLKYDNC 213 (408)
Q Consensus 181 ----------------------------~~c---~~~Pgs~~~~~~~~~~-~~~wGvdylK~D~~ 213 (408)
.++ .++|.++.|+-..+.. +.++|||.+.+|..
T Consensus 346 ~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 346 DDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred ccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 000 2356677777655555 45899999999964
No 48
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=81.79 E-value=4.5 Score=36.94 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCC----CHHHHHHHHHHcCCe--EEEE
Q 015338 102 ACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPS----GIKALADYVHGKGLK--LGIY 175 (408)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~----Glk~l~~~ih~~G~k--~Glw 175 (408)
..+.+++...+....| ++.|+++++| .|....+...+.-...+..|.. =+..+.+...+.||| +|||
T Consensus 14 ~~~~~~~~W~~~~~~m-----~~~GidtlIl--q~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM-----KAIGIDTLIL--QWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred hcCCCHHHHHHHHHHH-----HHcCCcEEEE--EEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 3688999999999999 7788888877 3654322211111101112222 266777777899999 5999
Q ss_pred eeCCccccCCCccchhhH-HhHHHHH-HHcCCcEEEeecCCCCC------CCcccccHHHHHHHHhc--CCCceEe
Q 015338 176 SDAGVFTCQVRPGSLFHE-KDDAPLF-ASWGVDYLKYDNCFNLG------IEPKKRYPPMRDALNET--GCSIFYS 241 (408)
Q Consensus 176 ~~pg~~~c~~~Pgs~~~~-~~~~~~~-~~wGvdylK~D~~~~~~------~~~~~~Y~~m~~AL~~~--Gr~i~~s 241 (408)
.++.... .+.+....+. ++.++.+ +.||= +=.+..-|.+. ....+++..+.+.|++. +.|+++|
T Consensus 87 ~~~~~w~-~~~~~~~~~~~~~v~~el~~~yg~-h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 87 FDPDYWD-QGDLDWEAERNKQVADELWQRYGH-HPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred CCchhhh-ccCHHHHHHHHHHHHHHHHHHHcC-CCCCceEEEecccCCcccchHHHHHHHHHHHHHhCCCCCeEEe
Confidence 9876543 2322222222 1223222 23442 11111111110 11245666777777643 6787776
No 49
>PRK05402 glycogen branching enzyme; Provisional
Probab=78.23 E-value=20 Score=40.22 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=59.1
Q ss_pred HHHHHHH-HHHHHHcCCccCCceEEEeCCCccCC-----CCCCCCCeeecCCCCC--CCHHHHHHHHHHcCCeEEEEeeC
Q 015338 107 ETIIKET-ADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGIYSDA 178 (408)
Q Consensus 107 e~~i~~~-ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~FP--~Glk~l~~~ih~~G~k~Glw~~p 178 (408)
-+.+.+. ++.+ +++||+.|.|=--.+.. ..+..+...+++ +|- ..+|.|++.+|++||++=|=+-+
T Consensus 264 ~~~i~~~l~~yl-----k~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYV-----KEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3444444 4776 78898888653221110 111112233443 332 36999999999999996543221
Q ss_pred Cc------------------------------ccc---CCCccchhhHHhHHHHH-HHcCCcEEEeecC
Q 015338 179 GV------------------------------FTC---QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (408)
Q Consensus 179 g~------------------------------~~c---~~~Pgs~~~~~~~~~~~-~~wGvdylK~D~~ 213 (408)
.. .+| ..+|.+++|+...++.+ .++|||.+.+|..
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 10 001 23566777776666665 4799999999964
No 50
>PRK12313 glycogen branching enzyme; Provisional
Probab=78.12 E-value=20 Score=39.51 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=60.8
Q ss_pred CHHHHHHH-HHHHHHcCCccCCceEEEeCCCccCC-----CCCCCCCeeecCCCCC--CCHHHHHHHHHHcCCeEEEEee
Q 015338 106 SETIIKET-ADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGIYSD 177 (408)
Q Consensus 106 ~e~~i~~~-ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~FP--~Glk~l~~~ih~~G~k~Glw~~ 177 (408)
+-..+.+. ++.+ +++|++.|.|=-=+... ..+..+...+++ +|- +.+|.|++.+|++||++=|=+-
T Consensus 168 ~~~~~~~~ll~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 168 SYRELADELIPYV-----KEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44444444 5777 78898888753222111 111122334443 343 4699999999999999654321
Q ss_pred CCc--------------------------c---cc----CCCccchhhHHhHHHHH-HHcCCcEEEeecC
Q 015338 178 AGV--------------------------F---TC----QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (408)
Q Consensus 178 pg~--------------------------~---~c----~~~Pgs~~~~~~~~~~~-~~wGvdylK~D~~ 213 (408)
+.. . .+ ..+|.+++|+...++.+ .++|||.+.+|..
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 100 0 00 23567778877666665 4789999999964
No 51
>PRK06233 hypothetical protein; Provisional
Probab=77.62 E-value=11 Score=38.89 Aligned_cols=108 Identities=13% Similarity=-0.020 Sum_probs=62.8
Q ss_pred hcCCCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCC---CH--------HHHHHHHH
Q 015338 100 FFACNISETIIKETADALVS--TGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPS---GI--------KALADYVH 166 (408)
Q Consensus 100 ~~~~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~---Gl--------k~l~~~ih 166 (408)
.+|.+ .++.+.+.|+++.+ ..|.++|+.+|+|||.-....++.. ..+ ..+|. .. +.+-.-+.
T Consensus 157 ~~Y~~-~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~ 231 (372)
T PRK06233 157 KFYDS-WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKL---NDT-ENDPKEHQKYVKLAEDAVYVINKALA 231 (372)
T ss_pred ccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccc---ccc-ccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 45554 36777777777655 2567899999999998644222211 000 01111 11 11212233
Q ss_pred Hc--CCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCC
Q 015338 167 GK--GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 167 ~~--G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
.. +++++++++.|... +...+..-++..+..+.+..||.+=+++-.
T Consensus 232 ~~p~d~~i~~H~C~Gn~~--~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~ 279 (372)
T PRK06233 232 DLPEDLTVTTHICRGNFK--STYLFSGGYEPVAKYLGQLNYDGFFLEYDN 279 (372)
T ss_pred CCCcCCEEEEEeeCCCCC--CcccccCcHHHHHHHHHhCCCCEEEEecCC
Confidence 33 77899999887542 222223334455677788899999998853
No 52
>PRK14705 glycogen branching enzyme; Provisional
Probab=77.54 E-value=16 Score=43.28 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCccCCceEEEe--------CCCccCCCCCCCCCeeecCCCC--CCCHHHHHHHHHHcCCeEEEEeeCCc-
Q 015338 112 ETADALVSTGLAELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSDAGV- 180 (408)
Q Consensus 112 ~~ad~~~~~gl~~~G~~~~~i--------DDGW~~~~rd~~G~~~~d~~~F--P~Glk~l~~~ih~~G~k~Glw~~pg~- 180 (408)
+.++.+ +++||+.|.| |..|- .+..+...|++ +| |+++|.|++.+|++||++=|=+-|..
T Consensus 770 ~lldYl-----k~LGvt~IeLmPv~e~p~~~swG---Y~~~~y~ap~~-ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~ 840 (1224)
T PRK14705 770 ELVDYV-----KWLGFTHVEFMPVAEHPFGGSWG---YQVTSYFAPTS-RFGHPDEFRFLVDSLHQAGIGVLLDWVPAHF 840 (1224)
T ss_pred HHHHHH-----HHhCCCEEEECccccCCCCCCCC---CCccccCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 346777 7788888754 22241 12223333442 34 35799999999999999765332210
Q ss_pred ------------------cc--------c------CCCccchhhHHhHHHH-HHHcCCcEEEeecC
Q 015338 181 ------------------FT--------C------QVRPGSLFHEKDDAPL-FASWGVDYLKYDNC 213 (408)
Q Consensus 181 ------------------~~--------c------~~~Pgs~~~~~~~~~~-~~~wGvdylK~D~~ 213 (408)
.. + .++|.+..|+-..+.. +.+++||.+.+|..
T Consensus 841 ~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav 906 (1224)
T PRK14705 841 PKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAV 906 (1224)
T ss_pred CcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeeh
Confidence 00 0 1345566677555555 46899999999985
No 53
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=74.35 E-value=16 Score=40.21 Aligned_cols=100 Identities=22% Similarity=0.249 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEe--------CCCccCCCCCCCCCeeecCCCC--CCCHHHHHHHHHHcCCeEEEE
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIY 175 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~i--------DDGW~~~~rd~~G~~~~d~~~F--P~Glk~l~~~ih~~G~k~Glw 175 (408)
+.+...+.++.+ +++||..|-| |-+|- .+..|..-|. ++| |++||.|||.+|++|+-+=|=
T Consensus 163 ~~e~a~~llpYl-----~elG~T~IELMPv~e~p~~~sWG---Yq~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYL-----KELGITHIELMPVAEHPGDRSWG---YQGTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHH-----HHhCCCEEEEcccccCCCCCCCC---CCcceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 345566667777 7788887765 55562 2223333333 455 468999999999999876553
Q ss_pred eeCCc-----ccc----------------------------CCCccchhhHHhHHHH-HHHcCCcEEEeecCC
Q 015338 176 SDAGV-----FTC----------------------------QVRPGSLFHEKDDAPL-FASWGVDYLKYDNCF 214 (408)
Q Consensus 176 ~~pg~-----~~c----------------------------~~~Pgs~~~~~~~~~~-~~~wGvdylK~D~~~ 214 (408)
.-|+. ..| .+++++..|+-.-+.. +.++.||.|.+|...
T Consensus 234 ~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~ 306 (628)
T COG0296 234 WVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVA 306 (628)
T ss_pred ecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhh
Confidence 33321 001 1245566666444433 679999999999864
No 54
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=74.15 E-value=13 Score=37.98 Aligned_cols=83 Identities=16% Similarity=0.074 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCC-ccccCCCccchh-hHHhHHHHHHHcCCcEEEeecCCCCCC--CcccccH----HHHHH
Q 015338 159 KALADYVHGKGLKLGIYSDAG-VFTCQVRPGSLF-HEKDDAPLFASWGVDYLKYDNCFNLGI--EPKKRYP----PMRDA 230 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg-~~~c~~~Pgs~~-~~~~~~~~~~~wGvdylK~D~~~~~~~--~~~~~Y~----~m~~A 230 (408)
+.++.+.|++|+|+=+ ..+ ...-...|..+. +++..++.++++|+|.|-+|+-+.... ...+.|. .++++
T Consensus 67 ~~~~~~A~~~~v~v~~--~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~ 144 (358)
T cd02875 67 DELLCYAHSKGVRLVL--KGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKA 144 (358)
T ss_pred HHHHHHHHHcCCEEEE--ECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHH
Confidence 5788899999999642 211 111234555444 678899999999999999999876532 2234454 45556
Q ss_pred HHhcCCCceEeeC
Q 015338 231 LNETGCSIFYSLC 243 (408)
Q Consensus 231 L~~~Gr~i~~s~c 243 (408)
|.+.++...++++
T Consensus 145 l~~~~~~~~Lsva 157 (358)
T cd02875 145 FKKENPGYQISFD 157 (358)
T ss_pred HhhcCCCcEEEEE
Confidence 6665555566653
No 55
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=73.95 E-value=12 Score=35.65 Aligned_cols=83 Identities=18% Similarity=0.046 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~ 237 (408)
++.+++.+|..||++=|+..+-... .......+.+....+...+.|+||||.-.-.. .....+.-..|++++.++..|
T Consensus 114 i~~v~~~~~~~gl~vIlE~~l~~~~-~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILEPYLRGEE-VADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp HHHHHHHHHTSEEEEEEEECECHHH-BSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSST
T ss_pred HHHHHHHHhcCCcEEEEEEecCchh-hcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCCC
Confidence 8899999999999998874331111 11112334556677888899999999998743 222234456788888888877
Q ss_pred ----ceEee
Q 015338 238 ----IFYSL 242 (408)
Q Consensus 238 ----i~~s~ 242 (408)
+.++.
T Consensus 192 ~~~~Vk~sG 200 (236)
T PF01791_consen 192 GKVGVKASG 200 (236)
T ss_dssp TTSEEEEES
T ss_pred cceEEEEeC
Confidence 77763
No 56
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=73.49 E-value=38 Score=36.65 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCC----CCCCeeecCCCCCC--CHHHHHHHHHHcCCeEEE
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRD----LKGQLVPDTITFPS--GIKALADYVHGKGLKLGI 174 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd----~~G~~~~d~~~FP~--Glk~l~~~ih~~G~k~Gl 174 (408)
+...|.+.++.+ +++|++.|.|=--......+ ......+|| +|.. .++.|++.+|++|||+-|
T Consensus 25 ~~~gi~~~l~yl-----~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 25 DLRGIIEKLDYL-----KKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CHHHHHHhHHHH-----HHcCCCEEEECCcccCCCCCCCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 566777888888 78899988875544432111 111233554 3432 599999999999999654
No 57
>PLN02960 alpha-amylase
Probab=73.07 E-value=28 Score=39.94 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=59.7
Q ss_pred CHHHHH-HHHHHHHHcCCccCCceEEEeCCCccCC-----CCCCCCCeeecCCCC--CCCHHHHHHHHHHcCCeEEEEee
Q 015338 106 SETIIK-ETADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSD 177 (408)
Q Consensus 106 ~e~~i~-~~ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~F--P~Glk~l~~~ih~~G~k~Glw~~ 177 (408)
|...+. +.++.+ +++||+.|.|=---... ..+..+...|++ +| |+.++.|++.+|++||++=|=+-
T Consensus 414 tf~~~~e~~LdYL-----k~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~-~yGtp~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHV-----KKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSS-RFGTPDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCCCcccCCCccc-ccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 444554 347777 77888887752111000 111112223332 22 45799999999999999644321
Q ss_pred CC---------------c---------------ccc----CCCccchhhHHhHHHHH-HHcCCcEEEeecCC
Q 015338 178 AG---------------V---------------FTC----QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCF 214 (408)
Q Consensus 178 pg---------------~---------------~~c----~~~Pgs~~~~~~~~~~~-~~wGvdylK~D~~~ 214 (408)
+. . ..| .++|.+..|+-..+..+ .+++||.+.+|...
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~ 559 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLG 559 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccc
Confidence 10 0 001 23466777776666664 68999999999763
No 58
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=70.96 E-value=24 Score=41.99 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC----------------------------C---c----cccC-----CCccchhhHHhH
Q 015338 157 GIKALADYVHGKGLKLGIYSDA----------------------------G---V----FTCQ-----VRPGSLFHEKDD 196 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~p----------------------------g---~----~~c~-----~~Pgs~~~~~~~ 196 (408)
.+|.|++.+|++||++=|=+-. + . ..|. .+|.+..++...
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~ 327 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDV 327 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHH
Confidence 4999999999999996432111 0 0 1131 256777777777
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceE
Q 015338 197 APLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFY 240 (408)
Q Consensus 197 ~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~ 240 (408)
++.+.++|||.+.+|-....+..+......+...+++...+.++
T Consensus 328 lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 328 LRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred HHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCc
Confidence 78777799999999986654333333335666677766555443
No 59
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=69.94 E-value=15 Score=36.29 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=60.0
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~ 202 (408)
.+.|.+.|.++|-|..... -+.-....--.|. ++.+++.+|+.|.+.+++.+-.. ....+.+.+
T Consensus 178 ~~~G~d~i~i~d~~~~~~~--isp~~f~e~~~p~-~k~i~~~i~~~g~~~~lH~cG~~-------------~~~~~~l~~ 241 (330)
T cd03465 178 IEAGADGIYISDPWASSSI--LSPEDFKEFSLPY-LKKVFDAIKALGGPVIHHNCGDT-------------APILELMAD 241 (330)
T ss_pred HHhCCCEEEEeCCccccCC--CCHHHHHHHhhHH-HHHHHHHHHHcCCceEEEECCCc-------------hhHHHHHHH
Confidence 4568999999998865210 0000011112444 89999999999999888665211 145788899
Q ss_pred cCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEe
Q 015338 203 WGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (408)
Q Consensus 203 wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s 241 (408)
.|+|-+-+|.+. .+.++.+..|+.+.+.
T Consensus 242 ~~~d~~~~d~~~-----------dl~~~~~~~g~~~~i~ 269 (330)
T cd03465 242 LGADVFSIDVTV-----------DLAEAKKKVGDKACLM 269 (330)
T ss_pred hCCCeEeecccC-----------CHHHHHHHhCCceEEE
Confidence 999999988874 3345556667665543
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=69.29 E-value=6 Score=40.61 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCC
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQV 185 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~ 185 (408)
+.+..++.++.| +.+||+++-. +=...+. |++.+-.-++.|.+++|++||++-+=+.|
T Consensus 12 ~~~~~~~yi~~a-----~~~Gf~~iFT--SL~ipe~--------~~~~~~~~~~~l~~~a~~~~~~v~~Disp------- 69 (357)
T PF05913_consen 12 SFEENKAYIEKA-----AKYGFKRIFT--SLHIPED--------DPEDYLERLKELLKLAKELGMEVIADISP------- 69 (357)
T ss_dssp -HHHHHHHHHHH-----HCTTEEEEEE--EE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C-------
T ss_pred CHHHHHHHHHHH-----HHCCCCEEEC--CCCcCCC--------CHHHHHHHHHHHHHHHHHCCCEEEEECCH-------
Confidence 578888899988 6778877644 1111111 11222224899999999999998765554
Q ss_pred CccchhhHH---hHHHHHHHcCCcEEEeecCCCC
Q 015338 186 RPGSLFHEK---DDAPLFASWGVDYLKYDNCFNL 216 (408)
Q Consensus 186 ~Pgs~~~~~---~~~~~~~~wGvdylK~D~~~~~ 216 (408)
.++.++. .+.+.|+++||+.|.+|+-...
T Consensus 70 --~~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~~ 101 (357)
T PF05913_consen 70 --KVLKKLGISYDDLSFFKELGIDGLRLDYGFSG 101 (357)
T ss_dssp --CHHHTTT-BTTBTHHHHHHT-SEEEESSS-SC
T ss_pred --HHHHHcCCCHHHHHHHHHcCCCEEEECCCCCH
Confidence 4455542 3477899999999999997654
No 61
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=67.30 E-value=51 Score=28.89 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCccCCceEEEeCCC--ccCC-CCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCC
Q 015338 112 ETADALVSTGLAELGYDHVNIDDC--WSSP-LRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179 (408)
Q Consensus 112 ~~ad~~~~~gl~~~G~~~~~iDDG--W~~~-~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg 179 (408)
+.++.| +++|++-++|..+ +--. -....|...|.-+ -+=|+.+++.+|++|+++=+|++.+
T Consensus 4 ~~~~~l-----k~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 4 QFVDTL-----KEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHH-----HHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 455666 6778999999654 2110 1111233333322 2337999999999999999999765
No 62
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=67.13 E-value=89 Score=30.02 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeec-CCCCCC-CHHHHHHHHHHcCCeEEEEeeCCc--
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPD-TITFPS-GIKALADYVHGKGLKLGIYSDAGV-- 180 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d-~~~FP~-Glk~l~~~ih~~G~k~Glw~~pg~-- 180 (408)
++++.+........+ .|...||+.+.+=+ +.. ...+..+ +--||+ =+.+++..+... .++|+-+--..
T Consensus 67 ls~~~v~~~lq~~i~-~le~~G~d~illlC---TG~---F~~l~~~~~lleP~ril~~lV~al~~~-~~vGVivP~~eQ~ 138 (221)
T PF07302_consen 67 LSKKKVEPRLQACIA-QLEAQGYDVILLLC---TGE---FPGLTARNPLLEPDRILPPLVAALVGG-HQVGVIVPLPEQI 138 (221)
T ss_pred EEHHHHHHHHHHHHH-HHHHCCCCEEEEec---cCC---CCCCCCCcceeehHHhHHHHHHHhcCC-CeEEEEecCHHHH
Confidence 556655555443222 23667899888732 110 1111111 123443 267888888776 79999763210
Q ss_pred ---------cc---c--CCCc--cchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHH-hcCCCceEee
Q 015338 181 ---------FT---C--QVRP--GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALN-ETGCSIFYSL 242 (408)
Q Consensus 181 ---------~~---c--~~~P--gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~-~~Gr~i~~s~ 242 (408)
.. | ...| |..+-+..-++.++++|.|+|=+|..++. .+|++.++ .+|.|++++.
T Consensus 139 ~~~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt--------~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 139 AQQAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYT--------QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC--------HHHHHHHHHHhCCCEEeHH
Confidence 00 1 1233 34555667788999999999999999753 57777774 5799998873
No 63
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=66.78 E-value=37 Score=33.46 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCC-ccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVR-PGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGC 236 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~-Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr 236 (408)
+..+++..|+.||-.=+|.-|-....... ....+.+..-++.=+|.|.|.||.++.... ..++++.+.++-
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~--------e~F~~vv~~~~v 203 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP--------ESFRRVVAACGV 203 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh--------HHHHHHHHhCCC
Confidence 67788889999999999987743222111 122233344455667999999999987543 567888898999
Q ss_pred CceEe
Q 015338 237 SIFYS 241 (408)
Q Consensus 237 ~i~~s 241 (408)
|++++
T Consensus 204 pVvia 208 (265)
T COG1830 204 PVVIA 208 (265)
T ss_pred CEEEe
Confidence 98876
No 64
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.32 E-value=39 Score=33.20 Aligned_cols=105 Identities=17% Similarity=0.073 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~ 184 (408)
.+++.+++.|..+ +++|.+++-. +-++ .|..-..|.-- -..|++.|.++.++.|+.+-- ++.
T Consensus 38 e~~~~~~~~A~~l-----k~~g~~~~r~--~~~k-pRTs~~s~~G~---g~~gl~~l~~~~~~~Gl~~~t--e~~----- 99 (266)
T PRK13398 38 ESEEQMVKVAEKL-----KELGVHMLRG--GAFK-PRTSPYSFQGL---GEEGLKILKEVGDKYNLPVVT--EVM----- 99 (266)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEE--eeec-CCCCCCccCCc---HHHHHHHHHHHHHHcCCCEEE--eeC-----
Confidence 4899999999999 5566665544 2223 33331112100 035899999999999998753 221
Q ss_pred CCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeC
Q 015338 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLC 243 (408)
Q Consensus 185 ~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c 243 (408)
-...++.+.+. +|++|+=..... ...+.+++.++|.||+++..
T Consensus 100 --------d~~~~~~l~~~-vd~~kIga~~~~-------n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 100 --------DTRDVEEVADY-ADMLQIGSRNMQ-------NFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred --------ChhhHHHHHHh-CCEEEECccccc-------CHHHHHHHhcCCCcEEEeCC
Confidence 12245566677 888888543221 13566777888999988853
No 65
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=65.15 E-value=53 Score=35.62 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCC-----eeecCCCCC--CCHHHHHHHHHHcCCeEEEEeeC
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQ-----LVPDTITFP--SGIKALADYVHGKGLKLGIYSDA 178 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~-----~~~d~~~FP--~Glk~l~~~ih~~G~k~Glw~~p 178 (408)
+-+.|.+.++.+ +++|++.|.|=--+..... ..|. ..+|+ .|. ..++.|++.+|++|||+-|=+-+
T Consensus 31 dl~gi~~~ldyl-----~~lGv~~i~l~P~~~~~~~-~~gY~~~d~~~id~-~~Gt~~d~~~lv~~~h~~gi~vilD~V~ 103 (551)
T PRK10933 31 DLRGVTQRLDYL-----QKLGVDAIWLTPFYVSPQV-DNGYDVANYTAIDP-TYGTLDDFDELVAQAKSRGIRIILDMVF 103 (551)
T ss_pred CHHHHHHhhHHH-----HhCCCCEEEECCCCCCCCC-CCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 566778888888 7889998877333221110 1122 22443 443 25999999999999996542211
Q ss_pred -----------------------------------Cccc--------------------c---------CCCccchhhHH
Q 015338 179 -----------------------------------GVFT--------------------C---------QVRPGSLFHEK 194 (408)
Q Consensus 179 -----------------------------------g~~~--------------------c---------~~~Pgs~~~~~ 194 (408)
.... + ..+|.+++++.
T Consensus 104 NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~ 183 (551)
T PRK10933 104 NHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELK 183 (551)
T ss_pred CCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHH
Confidence 0000 0 13567778887
Q ss_pred hHHHHHHHcCCcEEEeecCC
Q 015338 195 DDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 195 ~~~~~~~~wGvdylK~D~~~ 214 (408)
..++.+.+.|||.+.+|...
T Consensus 184 ~~~~~W~~~GvDGfRlDa~~ 203 (551)
T PRK10933 184 KVCEFWADRGVDGLRLDVVN 203 (551)
T ss_pred HHHHHHHHCCCcEEEEcchh
Confidence 77888889999999999654
No 66
>PLN00196 alpha-amylase; Provisional
Probab=64.98 E-value=17 Score=38.14 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=69.9
Q ss_pred EEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCee-----ecCCCCCC--CHHHHHHHHH
Q 015338 94 GWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFPS--GIKALADYVH 166 (408)
Q Consensus 94 GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-----~d~~~FP~--Glk~l~~~ih 166 (408)
.|++|..-+ -..+.|.+.++.+ +++|+..|-|==-... ....|.+. +|+++|-+ -++.|++.+|
T Consensus 32 ~W~~~~~~g--g~~~~i~~kldyL-----~~LGvtaIWL~P~~~s--~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 32 NWESWKQNG--GWYNFLMGKVDDI-----AAAGITHVWLPPPSHS--VSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred ccCCCCCCC--cCHHHHHHHHHHH-----HHcCCCEEEeCCCCCC--CCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 466665422 2466788889988 7788888766432222 11224433 45556742 4999999999
Q ss_pred HcCCeEE-----------------EEeeC--C----------cccc--------------------------CCCccchh
Q 015338 167 GKGLKLG-----------------IYSDA--G----------VFTC--------------------------QVRPGSLF 191 (408)
Q Consensus 167 ~~G~k~G-----------------lw~~p--g----------~~~c--------------------------~~~Pgs~~ 191 (408)
++|||+= .|... + ...| ..+|.+++
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 9999952 23210 0 0001 23566777
Q ss_pred hHHhHHHHHH-HcCCcEEEeecCC
Q 015338 192 HEKDDAPLFA-SWGVDYLKYDNCF 214 (408)
Q Consensus 192 ~~~~~~~~~~-~wGvdylK~D~~~ 214 (408)
++...++.+. +.|||.+.+|..-
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak 206 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAK 206 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhh
Confidence 7776666665 6899999999874
No 67
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=64.12 E-value=12 Score=38.07 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc--cccCC-----------CccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGV--FTCQV-----------RPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~--~~c~~-----------~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
.++|++.+++.+++||||+.+.. ..|-. .|. ..++-+..+++.++--+.|=-|.-
T Consensus 152 V~EL~~A~rk~dirfGLY~SlfEwfhplyl~d~~~~f~~~~f~~-~k~lpem~eLVtkY~PeviWSDGe 219 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLFEWFHPLYLDDKKHLFNTQHFPE-EKTLPEMYELVTKYNPEVIWSDGE 219 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHHHhhchhhccchhhcccccccch-hcchHHHHHHHHhcCCceEeeCCC
Confidence 68999999999999999998853 12310 111 223335566666666666655543
No 68
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=63.96 E-value=27 Score=36.01 Aligned_cols=107 Identities=14% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHH--cCCccCCceEEEeCC---Cc---------cCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc
Q 015338 103 CNISETIIKETADALVS--TGLAELGYDHVNIDD---CW---------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK 168 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDD---GW---------~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~ 168 (408)
..+|+++|.+.++.+++ .-.+++|++-|.|=. |+ .+.+.|.+|-=.-+..+| +..+++.|++.
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf---~~eii~~vr~~ 214 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRF---AIEIVEEIKAR 214 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHH---HHHHHHHHHHh
Confidence 45888888888776553 233568999999976 77 232345565434455577 46788888753
Q ss_pred ---CCeEEEEeeCCccccC----CCc------cchhhH--HhHHHHHHHcCCcEEEeec
Q 015338 169 ---GLKLGIYSDAGVFTCQ----VRP------GSLFHE--KDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 169 ---G~k~Glw~~pg~~~c~----~~P------gs~~~~--~~~~~~~~~wGvdylK~D~ 212 (408)
++.+|+=+.+....+. ..| +..... ...++.+.+.|+|||-+-.
T Consensus 215 ~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 215 CGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred cCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 5677776665211110 111 112222 3567888899999998753
No 69
>PLN02361 alpha-amylase
Probab=61.83 E-value=59 Score=33.96 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCee-----ecCCCCCC--CHHHHHHHHHHcCCeEEE------
Q 015338 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFPS--GIKALADYVHGKGLKLGI------ 174 (408)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-----~d~~~FP~--Glk~l~~~ih~~G~k~Gl------ 174 (408)
+.|.+.++.+ +++|+..|-|=--..... ..|.+. +| .+|.+ .++.|++.+|++|||+=+
T Consensus 29 ~~i~~kl~~l-----~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 29 RNLEGKVPDL-----AKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLN-SAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHH-----HHcCCCEEEeCCCCcCCC--CCCCCcccccccC-cccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 6777888887 778888776643332211 123322 34 35652 499999999999999532
Q ss_pred -----------Eee-CCc---------ccc--------------------CCCccchhhHHhHHHHHHH-cCCcEEEeec
Q 015338 175 -----------YSD-AGV---------FTC--------------------QVRPGSLFHEKDDAPLFAS-WGVDYLKYDN 212 (408)
Q Consensus 175 -----------w~~-pg~---------~~c--------------------~~~Pgs~~~~~~~~~~~~~-wGvdylK~D~ 212 (408)
|.. .+. ..| ..+|.+++++...++-+.+ .|||.+.+|+
T Consensus 101 ~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDa 180 (401)
T PLN02361 101 RVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDF 180 (401)
T ss_pred ccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 110 000 001 1356677777766776764 8999999998
Q ss_pred CCCC
Q 015338 213 CFNL 216 (408)
Q Consensus 213 ~~~~ 216 (408)
...-
T Consensus 181 vk~~ 184 (401)
T PLN02361 181 AKGY 184 (401)
T ss_pred cccC
Confidence 8654
No 70
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=61.71 E-value=1.1e+02 Score=36.12 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHcCCeEEEEee--------------CCc------------ccc-----CCCccchhhHHhHHHHH-HHcC
Q 015338 157 GIKALADYVHGKGLKLGIYSD--------------AGV------------FTC-----QVRPGSLFHEKDDAPLF-ASWG 204 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~--------------pg~------------~~c-----~~~Pgs~~~~~~~~~~~-~~wG 204 (408)
.||.|++.+|++||++=|=+- |+. ..| ..+|.++.++...+..+ .++|
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 499999999999999643211 111 112 13566677776566665 4799
Q ss_pred CcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeCCC
Q 015338 205 VDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEW 245 (408)
Q Consensus 205 vdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c~~ 245 (408)
||.+.+|...... .+....++.++.+..+.+++-.-.|
T Consensus 636 VDGFRfDl~g~~d---~~~~~~~~~~l~~~dP~~~liGE~W 673 (1111)
T TIGR02102 636 VDGFRFDMMGDHD---AASIEIAYKEAKAINPNIIMIGEGW 673 (1111)
T ss_pred CcEEEEeccccCC---HHHHHHHHHHHHHhCcCEEEEEecc
Confidence 9999999875321 2333456666666666665543334
No 71
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=61.68 E-value=34 Score=38.63 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCccCCceEEEeCCCccCC-----CCCCCCCeeecCCCC--CCCHHHHHHHHHHcCCeEEEEeeCC----
Q 015338 111 KETADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSDAG---- 179 (408)
Q Consensus 111 ~~~ad~~~~~gl~~~G~~~~~iDDGW~~~-----~rd~~G~~~~d~~~F--P~Glk~l~~~ih~~G~k~Glw~~pg---- 179 (408)
.+.++.+ +++||+.|.|=--+... ..+..+...++ .+| |+.+|.|++.+|++||++=|=+-+.
T Consensus 254 ~~~L~yl-----k~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 254 DDVLPRI-----KALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred HHHHHHH-----HHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 3456776 78899988763222211 11111223344 245 3469999999999999965432211
Q ss_pred -----------cc-----------------cc--CCCccchhhHHhHHHHH-HHcCCcEEEeecC
Q 015338 180 -----------VF-----------------TC--QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (408)
Q Consensus 180 -----------~~-----------------~c--~~~Pgs~~~~~~~~~~~-~~wGvdylK~D~~ 213 (408)
.. .| ..+|.++.|+...++.+ .++|||.+.+|..
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 00 01 12455666776666665 4799999999974
No 72
>PRK06852 aldolase; Validated
Probab=60.50 E-value=50 Score=33.23 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhc-CC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNET-GC 236 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~-Gr 236 (408)
+..+++..|+.||-+-+|.-|--.. ...+...+++...++.=+|.|-|.||..++...+.. .-..++++.+.+ ..
T Consensus 156 l~~v~~ea~~~GlPll~~~yprG~~-i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g---~~e~f~~vv~~~g~v 231 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLWIYPRGKA-VKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGAN---PAELFKEAVLAAGRT 231 (304)
T ss_pred HHHHHHHHHHhCCcEEEEeeccCcc-cCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCC---CHHHHHHHHHhCCCC
Confidence 7888899999999998888763211 122223345666667778999999999998532111 124566677778 45
Q ss_pred CceEe
Q 015338 237 SIFYS 241 (408)
Q Consensus 237 ~i~~s 241 (408)
|++++
T Consensus 232 pVvia 236 (304)
T PRK06852 232 KVVCA 236 (304)
T ss_pred cEEEe
Confidence 66655
No 73
>PRK03705 glycogen debranching enzyme; Provisional
Probab=60.27 E-value=91 Score=34.72 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC-----------------------------Cc----ccc-----CCCccchhhHHhHHH
Q 015338 157 GIKALADYVHGKGLKLGIYSDA-----------------------------GV----FTC-----QVRPGSLFHEKDDAP 198 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~p-----------------------------g~----~~c-----~~~Pgs~~~~~~~~~ 198 (408)
.+|.|++.+|++||++=|=+-. +. ..| ..+|.+.+|+...++
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~ 322 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLR 322 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHH
Confidence 4999999999999996432111 00 112 236777888877777
Q ss_pred HHH-HcCCcEEEeecCCCCC
Q 015338 199 LFA-SWGVDYLKYDNCFNLG 217 (408)
Q Consensus 199 ~~~-~wGvdylK~D~~~~~~ 217 (408)
.+. ++|||.+.+|-....+
T Consensus 323 ~W~~e~gVDGFRfD~a~~l~ 342 (658)
T PRK03705 323 YWVETCHVDGFRFDLATVLG 342 (658)
T ss_pred HHHHHhCCCEEEEEcHhhhC
Confidence 765 6899999999865443
No 74
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.49 E-value=58 Score=34.26 Aligned_cols=137 Identities=11% Similarity=0.101 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEe-CCCccCCCCCCCCCeeecCCC-C--C---CCHHHHHHHHHHcCCeEEEEe
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNI-DDCWSSPLRDLKGQLVPDTIT-F--P---SGIKALADYVHGKGLKLGIYS 176 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~i-DDGW~~~~rd~~G~~~~d~~~-F--P---~Glk~l~~~ih~~G~k~Glw~ 176 (408)
-.+++++++..|.+...|+... |+++ -+|..-. ..+..-|..+... + . +=|+.+++..|++||++==|+
T Consensus 60 ~~~~~el~~~ld~l~~ln~NTv---~~qV~~~G~~ly-pS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf 135 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNTV---YPQVWNDGDALY-PSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWF 135 (418)
T ss_pred cccHHHHHHHHHHHHHcCCcee---EEEEecCccccc-cccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeech
Confidence 3678999999999966555543 3333 2232110 0111112222100 0 1 227888888999999999999
Q ss_pred eCCcc---c--------------------------------cCCCccchhhHH-hHHHHHHHcCCcEEEeecCCCCC---
Q 015338 177 DAGVF---T--------------------------------CQVRPGSLFHEK-DDAPLFASWGVDYLKYDNCFNLG--- 217 (408)
Q Consensus 177 ~pg~~---~--------------------------------c~~~Pgs~~~~~-~~~~~~~~wGvdylK~D~~~~~~--- 217 (408)
+++.. + -+.+|.+++|+. ..++..+.|.||.|-+|--....
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~ 215 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPF 215 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecccCcc
Confidence 88520 0 045788899995 45677889999999999643221
Q ss_pred -CC------------------cc-----------cccHHHHHHHHhcCCCceEeeCC
Q 015338 218 -IE------------------PK-----------KRYPPMRDALNETGCSIFYSLCE 244 (408)
Q Consensus 218 -~~------------------~~-----------~~Y~~m~~AL~~~Gr~i~~s~c~ 244 (408)
.+ +. ..+.++..++++..+.+.++++.
T Consensus 216 gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 216 GYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred ccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 00 01 11235566788899999999875
No 75
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=59.14 E-value=69 Score=32.95 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCC
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQV 185 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~ 185 (408)
+++.+.+.|..+ ++.|+.++- .|.+..+...+|..-+. ..|++.|.++.++.|+.+-- +|
T Consensus 130 ~~~~~~~~A~~l-----k~~g~~~~r--~~~~kpRtsp~~f~g~~----~e~l~~L~~~~~~~Gl~~~t--~v------- 189 (360)
T PRK12595 130 SYEQVEAVAKAL-----KAKGLKLLR--GGAFKPRTSPYDFQGLG----VEGLKILKQVADEYGLAVIS--EI------- 189 (360)
T ss_pred CHHHHHHHHHHH-----HHcCCcEEE--ccccCCCCCCccccCCC----HHHHHHHHHHHHHcCCCEEE--ee-------
Confidence 689999999998 556766554 45555222222211111 14799999999999988742 22
Q ss_pred CccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEee
Q 015338 186 RPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (408)
Q Consensus 186 ~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~ 242 (408)
|-...++.+.+. +|.+|+=..... . ..+.+++.++|.||+++.
T Consensus 190 ------~d~~~~~~l~~~-vd~lkI~s~~~~------n-~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 190 ------VNPADVEVALDY-VDVIQIGARNMQ------N-FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred ------CCHHHHHHHHHh-CCeEEECccccc------C-HHHHHHHHccCCcEEEeC
Confidence 223356677788 999998543221 1 356777788888888874
No 76
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=58.63 E-value=15 Score=35.97 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=57.2
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeecCCC-----CCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTIT-----FPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~-----FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~ 197 (408)
.++|.+.++|||-|..... ...+++. .|. ++.+++.+|..|.+.++++ |.. .....
T Consensus 154 ~eaG~d~i~i~dp~~~~~~-----~~is~~~~~e~~~p~-~k~i~~~i~~~~~~~~lH~------cg~-------~~~~~ 214 (306)
T cd00465 154 IEAGAKALQIHEPAFSQIN-----SFLGPKMFKKFALPA-YKKVAEYKAAGEVPIVHHS------CYD-------AADLL 214 (306)
T ss_pred HHhCCCEEEEecccccccC-----CCCCHHHHHHHHHHH-HHHHHHHHhhcCCceEEEE------CCC-------HHHHH
Confidence 5679999999999876321 0111111 233 7888898898888887754 422 12356
Q ss_pred HHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceE
Q 015338 198 PLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFY 240 (408)
Q Consensus 198 ~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~ 240 (408)
..+.+.|+|.+-+|+.. . .+.++.+..|.++.+
T Consensus 215 ~~l~~~~~d~~~~d~~~-~---------d~~~~~~~~~~~~~i 247 (306)
T cd00465 215 EEMIQLGVDVISFDMTV-N---------EPKEAIEKVGEKKTL 247 (306)
T ss_pred HHHHHhCcceEeccccc-C---------CHHHHHHHhCCCEEE
Confidence 77888999999999874 1 224555566655433
No 77
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.95 E-value=1.1e+02 Score=30.32 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCC--cc---------CCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-
Q 015338 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDC--WS---------SPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG--W~---------~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~- 168 (408)
...|+++|.+.++.+++ ...+++|++-|.|-.+ +. +.+.|.+|--.-+..+| +..+++.|++.
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~---~~eii~avr~~~ 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARF---LLEIVAAVREAV 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHH---HHHHHHHHHHHc
Confidence 35888888888776654 2346789999888764 21 21234443322243344 56778888764
Q ss_pred --CCeEEEEeeCCccccCCCcc--chhhHHhHHHHHHHcCCcEEEeecCC
Q 015338 169 --GLKLGIYSDAGVFTCQVRPG--SLFHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 169 --G~k~Glw~~pg~~~c~~~Pg--s~~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
++.+|+=+.+.... ++ ..+-....++.+.+.|+|||.+-...
T Consensus 206 g~d~~i~vris~~~~~----~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 206 GPDFPVGVRLSADDFV----PGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred CCCceEEEEechhccC----CCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 56777766654211 11 12223456788999999999976543
No 78
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=56.66 E-value=39 Score=33.97 Aligned_cols=102 Identities=16% Similarity=0.061 Sum_probs=59.1
Q ss_pred cCC-CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCC--CCeeecCCCCCC----CHHHHHHHHHHcCCeEE
Q 015338 101 FAC-NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK--GQLVPDTITFPS----GIKALADYVHGKGLKLG 173 (408)
Q Consensus 101 ~~~-~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~--G~~~~d~~~FP~----Glk~l~~~ih~~G~k~G 173 (408)
||. .-|.+.=+++++++.+. |+..++- ...-|.+ ..|. +.+|. -|+.|++..++.|++|+
T Consensus 7 FYG~PWs~e~R~~l~~f~~~~-----kmN~YiY-----APKdDpyhr~~Wr---e~Yp~~el~~l~~L~~~a~~~~V~Fv 73 (306)
T PF07555_consen 7 FYGRPWSHEDRLDLIRFLGRY-----KMNTYIY-----APKDDPYHRSKWR---EPYPEEELAELKELADAAKANGVDFV 73 (306)
T ss_dssp SSSS---HHHHHHHHHHHHHT-----T--EEEE-------TT-TTTTTTTT---S---HHHHHHHHHHHHHHHHTT-EEE
T ss_pred cCCCCCCHHHHHHHHHHHHHc-----CCceEEE-----CCCCChHHHhhhc---ccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 443 67888889999999554 4444442 2222222 1232 34453 49999999999999999
Q ss_pred EEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCC
Q 015338 174 IYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (408)
Q Consensus 174 lw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (408)
.=+.||...|.+.+...+-+..-++++.+.||+.+=+=|-..
T Consensus 74 ~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 115 (306)
T PF07555_consen 74 YAISPGLDICYSSEEDFEALKAKFDQLYDLGVRSFAILFDDI 115 (306)
T ss_dssp EEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--EEEEE-TS-
T ss_pred EEECcccccccCcHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Confidence 999999877755444455555667778899999988766443
No 79
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=55.96 E-value=66 Score=29.25 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=66.3
Q ss_pred cCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc--CCeEEEEeeCCccc----cCCCccc-hhhHHhH
Q 015338 124 ELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK--GLKLGIYSDAGVFT----CQVRPGS-LFHEKDD 196 (408)
Q Consensus 124 ~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~--G~k~Glw~~pg~~~----c~~~Pgs-~~~~~~~ 196 (408)
..++.+++.. |... +.+|....+...........+..++++ |+|+-+-+.-.... -...|.. ..+++..
T Consensus 21 ~~~~thvi~~--f~~v--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 21 LSLCTHIIYA--FAEI--SSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSL 96 (210)
T ss_pred cccCCEEEEe--eEEE--CCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHH
Confidence 3456677763 4432 223333321122233456677778887 88876655322111 1223332 3466788
Q ss_pred HHHHHHcCCcEEEeecCCCCCCC--cccccHHHHHHHHhc-CC-CceEeeC
Q 015338 197 APLFASWGVDYLKYDNCFNLGIE--PKKRYPPMRDALNET-GC-SIFYSLC 243 (408)
Q Consensus 197 ~~~~~~wGvdylK~D~~~~~~~~--~~~~Y~~m~~AL~~~-Gr-~i~~s~c 243 (408)
.+.+.++|+|.|=+|+-+..... ..+.|..+.+.|++. ++ ..++++.
T Consensus 97 ~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a 147 (210)
T cd00598 97 VSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIA 147 (210)
T ss_pred HHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEE
Confidence 88899999999999997755432 246676666666544 22 4666654
No 80
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=55.91 E-value=22 Score=34.16 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=57.8
Q ss_pred ceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc----cccCCCccch-hhHHhHHHHHH
Q 015338 127 YDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV----FTCQVRPGSL-FHEKDDAPLFA 201 (408)
Q Consensus 127 ~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~----~~c~~~Pgs~-~~~~~~~~~~~ 201 (408)
+..+++ +|.. -+.+|.+...+ -+..+..+.+.+|++|+|+-+=+.-+. ..-...|..+ .+++..++.++
T Consensus 23 lThv~~--~f~~--i~~~G~l~~~~--~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~ 96 (253)
T cd06545 23 LTHINL--AFAN--PDANGTLNANP--VRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVV 96 (253)
T ss_pred CCeEEE--EEEE--ECCCCeEEecC--cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHH
Confidence 455555 2432 23456665532 123477888999999999765443211 1112344433 46678888999
Q ss_pred HcCCcEEEeecCCCCCCCcccccHHHHHHH
Q 015338 202 SWGVDYLKYDNCFNLGIEPKKRYPPMRDAL 231 (408)
Q Consensus 202 ~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL 231 (408)
++|+|.|=+|+-+.... .+.|..+.+.|
T Consensus 97 ~~~~DGIdiDwE~~~~~--~~~~~~fv~~L 124 (253)
T cd06545 97 SYNLDGIDVDLEGPDVT--FGDYLVFIRAL 124 (253)
T ss_pred HhCCCceeEEeeccCcc--HhHHHHHHHHH
Confidence 99999999999765432 34455444444
No 81
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=55.33 E-value=26 Score=35.61 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCC--------CCCCee---ecCCCCC-CCHHHHHHHHHHcCCeEE
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRD--------LKGQLV---PDTITFP-SGIKALADYVHGKGLKLG 173 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd--------~~G~~~---~d~~~FP-~Glk~l~~~ih~~G~k~G 173 (408)
+-+.-+++++.+++.|....-++.+..|.--...... +.|.-+ ...-.|| .+++.|.++.+++|+.|-
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 5678888999886666443334444333322111000 001000 1112233 378999999999999874
Q ss_pred EEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCC
Q 015338 174 IYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 174 lw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
++|+ -...++.+.+.|++.+|+=-..
T Consensus 94 --stpf-------------d~~svd~l~~~~v~~~KIaS~~ 119 (329)
T TIGR03569 94 --STPF-------------DLESADFLEDLGVPRFKIPSGE 119 (329)
T ss_pred --EEeC-------------CHHHHHHHHhcCCCEEEECccc
Confidence 2332 2345677889999999986543
No 82
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=55.24 E-value=50 Score=38.08 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCeEEEEee-------------------CCc------------ccc-----CCCccchhhHHhHHHHH-
Q 015338 158 IKALADYVHGKGLKLGIYSD-------------------AGV------------FTC-----QVRPGSLFHEKDDAPLF- 200 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~-------------------pg~------------~~c-----~~~Pgs~~~~~~~~~~~- 200 (408)
+|.|++.+|++||++=|=+- |+. .+| ..+|.+..|+...++.+
T Consensus 406 fk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~ 485 (898)
T TIGR02103 406 FREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWA 485 (898)
T ss_pred HHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999643210 110 122 13566677776666665
Q ss_pred HHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeCCCC
Q 015338 201 ASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWG 246 (408)
Q Consensus 201 ~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c~~g 246 (408)
.++|||.+.+|-.... +.+....+++++++..+++++-.-.|.
T Consensus 486 ~ey~VDGFRfDlm~~~---~~~f~~~~~~~l~~i~pdi~l~GEgW~ 528 (898)
T TIGR02103 486 KDYKVDGFRFDLMGHH---PKAQMLAAREAIKALTPEIYFYGEGWD 528 (898)
T ss_pred HHcCCCEEEEechhhC---CHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 4899999999977543 334556778888888888877655564
No 83
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=54.86 E-value=54 Score=30.21 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=58.9
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~ 202 (408)
+..|+++++|=.+ .|.-..|+ + ++.=.+..++.||++|.|.=.-. .+.+.+.+-.+..++.++.
T Consensus 22 k~~Gi~faiikat--------eG~~~~D~-~----~~~n~~~A~~aGl~vG~Yhf~~~---~~~~~a~~eA~~f~~~~~~ 85 (192)
T cd06522 22 KNYGVKAVIVKLT--------EGTTYRNP-Y----AASQIANAKAAGLKVSAYHYAHY---TSAADAQAEARYFANTAKS 85 (192)
T ss_pred HHcCCCEEEEEEc--------CCCCccCh-H----HHHHHHHHHHCCCeeEEEEEEec---CChHHHHHHHHHHHHHHHH
Confidence 5568888888532 23334554 2 56677788999999999985421 1223333333444556666
Q ss_pred cCCc---EEEeecCCCCCC-CcccccHHHHHHHHhcC--CCceEee
Q 015338 203 WGVD---YLKYDNCFNLGI-EPKKRYPPMRDALNETG--CSIFYSL 242 (408)
Q Consensus 203 wGvd---ylK~D~~~~~~~-~~~~~Y~~m~~AL~~~G--r~i~~s~ 242 (408)
.|+. .+-+|.-..... ........+.+.+++.| +|++++.
T Consensus 86 ~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~~g~~~~~iY~~ 131 (192)
T cd06522 86 LGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKAAGYKNTDVYTS 131 (192)
T ss_pred cCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHHcCCCCcEEEcc
Confidence 6654 355676443221 11122346666777666 5777763
No 84
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=53.84 E-value=50 Score=32.94 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCcc-ccCCCc-cchhhHHhHHHHHHHcCCcEEEeecCCCCCCC----cccccHHHHHH
Q 015338 157 GIKALADYVHGKGLKLGIYSDAGVF-TCQVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIE----PKKRYPPMRDA 230 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~pg~~-~c~~~P-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~----~~~~Y~~m~~A 230 (408)
.++.-++.+|++|.|+-|-+--... .....+ ....+++...+.+.++|+|.|=+|+-+..... ..+.|..+.+.
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~ 140 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQ 140 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHH
Confidence 5788888999999998765532110 001122 23456677888899999999999997653221 12444455455
Q ss_pred HHh-cCCCceEeeC
Q 015338 231 LNE-TGCSIFYSLC 243 (408)
Q Consensus 231 L~~-~Gr~i~~s~c 243 (408)
|++ .+++++++..
T Consensus 141 lr~~~~~~~~lT~A 154 (312)
T cd02871 141 LKDHYGPNFILTMA 154 (312)
T ss_pred HHHHcCCCeEEEEC
Confidence 543 3556777754
No 85
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=52.39 E-value=55 Score=32.00 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCC-CCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDL-KGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~-~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~ 184 (408)
+++.+++.|..+.+ .|.+ +.. .+.+. .|.. +|..-+. -.|++.|.++.++.|+.+-- +|
T Consensus 37 ~~~~~~~~A~~lk~-----~~~k-~~r-~~~~K-pRtsp~s~~g~g----~~gl~~l~~~~~~~Gl~~~t--~~------ 96 (260)
T TIGR01361 37 SEEQIMETARFVKE-----AGAK-ILR-GGAFK-PRTSPYSFQGLG----EEGLKLLRRAADEHGLPVVT--EV------ 96 (260)
T ss_pred CHHHHHHHHHHHHH-----HHHH-hcc-Cceec-CCCCCccccccH----HHHHHHHHHHHHHhCCCEEE--ee------
Confidence 78889999999854 4444 222 35555 3432 2211111 24899999999999998753 22
Q ss_pred CCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEee
Q 015338 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (408)
Q Consensus 185 ~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~ 242 (408)
|-...++.+.+. +|++|+=.... .-..+.+++.++|.||+++.
T Consensus 97 -------~d~~~~~~l~~~-~d~lkI~s~~~-------~n~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 97 -------MDPRDVEIVAEY-ADILQIGARNM-------QNFELLKEVGKQGKPVLLKR 139 (260)
T ss_pred -------CChhhHHHHHhh-CCEEEECcccc-------cCHHHHHHHhcCCCcEEEeC
Confidence 122345556677 89999854321 12357788888899999875
No 86
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=51.16 E-value=33 Score=32.93 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEee
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYD 211 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D 211 (408)
|+.+++.+|++|+++-+|..|.. ....+.+.++|||+|=.|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~~~-------------~~~~~~l~~~GVd~I~TD 227 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTPDR-------------PNVWKTLMELGVDLLNTD 227 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccCCh-------------HHHHHHHHHhCCCEEecC
Confidence 78889999999999999997741 335778889999998766
No 87
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=50.87 E-value=45 Score=32.36 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~ 237 (408)
.+.|.+|++++|+.|.- .|+. ...++.+.+.|++++|+=-.... ...+.+++.++|.|
T Consensus 58 ~~~L~~~~~~~gi~f~s--tpfd-------------~~s~d~l~~~~~~~~KIaS~dl~-------n~~lL~~~A~tgkP 115 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFS--TPFD-------------EESVDFLEELGVPAYKIASGDLT-------NLPLLEYIAKTGKP 115 (241)
T ss_dssp HHHHHHHHHHTT-EEEE--EE-S-------------HHHHHHHHHHT-SEEEE-GGGTT--------HHHHHHHHTT-S-
T ss_pred HHHHHHHHHHcCCEEEE--CCCC-------------HHHHHHHHHcCCCEEEecccccc-------CHHHHHHHHHhCCc
Confidence 78999999999998852 3322 23466678889999998654322 12344444555555
Q ss_pred ceEe
Q 015338 238 IFYS 241 (408)
Q Consensus 238 i~~s 241 (408)
|++|
T Consensus 116 vIlS 119 (241)
T PF03102_consen 116 VILS 119 (241)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5555
No 88
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.82 E-value=1.3e+02 Score=29.55 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCee-ecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-PDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~ 184 (408)
+++.+++.|..+ +++|+.++-= |=++ .|.+-...+ +.. .|++.|.++.++.|+.+-- ++
T Consensus 27 s~e~~~~~a~~~-----~~~g~~~~r~--g~~k-pRts~~sf~G~G~----~gl~~L~~~~~~~Gl~~~T--ev------ 86 (250)
T PRK13397 27 SYDHIRLAASSA-----KKLGYNYFRG--GAYK-PRTSAASFQGLGL----QGIRYLHEVCQEFGLLSVS--EI------ 86 (250)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEe--cccC-CCCCCcccCCCCH----HHHHHHHHHHHHcCCCEEE--ee------
Confidence 789999999997 6667665432 2223 233211111 110 2799999999999998742 22
Q ss_pred CCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEee
Q 015338 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (408)
Q Consensus 185 ~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~ 242 (408)
|-...++.+++ .+|.+|+=-.... -..+.+++.++|+|++++.
T Consensus 87 -------~d~~~v~~~~e-~vdilqIgs~~~~-------n~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 87 -------MSERQLEEAYD-YLDVIQVGARNMQ-------NFEFLKTLSHIDKPILFKR 129 (250)
T ss_pred -------CCHHHHHHHHh-cCCEEEECccccc-------CHHHHHHHHccCCeEEEeC
Confidence 22345667777 5999998543221 1467788888999999885
No 89
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=49.87 E-value=27 Score=34.08 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++.+|++|+++..|+.+... ...++.+.++|||.|-.|.+
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDLND------------PENRKKLKELGVDGLIYDRI 290 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCCCC------------HHHHHHHHHcCCCEEEecCC
Confidence 46899999999999999873110 12577889999999998864
No 90
>smart00642 Aamy Alpha-amylase domain.
Probab=49.47 E-value=60 Score=29.37 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCC--CCCCCe-----eecCCCCC--CCHHHHHHHHHHcCCeEEEEe
Q 015338 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR--DLKGQL-----VPDTITFP--SGIKALADYVHGKGLKLGIYS 176 (408)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~r--d~~G~~-----~~d~~~FP--~Glk~l~~~ih~~G~k~Glw~ 176 (408)
-+.+.+.++.+ +++|++.|.|=--+..... ...|.. .+++ +|- +.++.|++.+|++||++=+=+
T Consensus 18 ~~gi~~~l~yl-----~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 18 LQGIIEKLDYL-----KDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHHHHHHHH-----HHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45666777777 7789988877332222110 111222 2332 332 359999999999999976533
No 91
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=49.41 E-value=19 Score=34.00 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc
Q 015338 158 IKALADYVHGKGLKLGIYSDAGV 180 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~ 180 (408)
...++++||++|||+|+=+.||+
T Consensus 101 ~~~lv~~ir~~Gmk~G~alkPgT 123 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALKPGT 123 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeCCCC
Confidence 68899999999999999999997
No 92
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=48.55 E-value=31 Score=35.90 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCeEEEEeeC
Q 015338 158 IKALADYVHGKGLKLGIYSDA 178 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~p 178 (408)
++.+++.+++.||.||||+.-
T Consensus 103 vgela~Avr~qGL~FGvy~s~ 123 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSG 123 (430)
T ss_pred HHHHHHHHHHcCCeeeEeecc
Confidence 789999999999999999983
No 93
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=48.34 E-value=95 Score=29.89 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccc---------------CCCcc---------chhhHHhHHHHHHHcCCcE-EEeec
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTC---------------QVRPG---------SLFHEKDDAPLFASWGVDY-LKYDN 212 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c---------------~~~Pg---------s~~~~~~~~~~~~~wGvdy-lK~D~ 212 (408)
+..++++||+.|+|+||=+.|++.-. ..+|| +.+.+++..+.+.+.|.++ |-+|.
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDG 176 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDG 176 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 67899999999999999999986211 12454 3333444444555677765 67776
Q ss_pred CCCCCCCcccccHHHHHHHHhcCCCceEee
Q 015338 213 CFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (408)
Q Consensus 213 ~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~ 242 (408)
.-.. .. ...+.++|-++++..
T Consensus 177 GI~~--------~~-i~~~~~aGad~~V~G 197 (229)
T PRK09722 177 SCNQ--------KT-YEKLMEAGADVFIVG 197 (229)
T ss_pred CCCH--------HH-HHHHHHcCCCEEEEC
Confidence 5332 11 233456788888764
No 94
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=48.14 E-value=92 Score=31.31 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCC--c---------cCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-
Q 015338 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDC--W---------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG--W---------~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~- 168 (408)
..+|+++|.+.++.+++ ...++.|++-|-|-.+ + .+.+.|.+|--.-+.-+| +..+++.|++.
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf---~~eiv~aIR~~v 218 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRF---LLEVVDAVRAVW 218 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 46899999888776654 2346689999988753 3 222345555433444455 56788888754
Q ss_pred --CCeEEEEeeCCccccCCCccchhh--HHhHHHHHHHcCCcEEEee
Q 015338 169 --GLKLGIYSDAGVFTCQVRPGSLFH--EKDDAPLFASWGVDYLKYD 211 (408)
Q Consensus 169 --G~k~Glw~~pg~~~c~~~Pgs~~~--~~~~~~~~~~wGvdylK~D 211 (408)
++.+|+=+.+.. .+ ++.... ....++.+.+.|+|||-+-
T Consensus 219 G~d~~v~vri~~~~-~~---~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 219 PEDKPLFVRISATD-WV---EGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCceEEEEEcccc-cC---CCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 455666544421 11 121222 2356778889999999863
No 95
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=47.17 E-value=47 Score=30.04 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
-+.+++.+|+.|+++-+|+... ....++.+.++|||+|=.|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~-------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVND-------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCC-------------hHHHHHHHHHcCCCEEeCCC
Confidence 4789999999999999998763 13467888999999997774
No 96
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=46.92 E-value=25 Score=33.52 Aligned_cols=124 Identities=21% Similarity=0.263 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCe-----eecCCCCCC--CHHHHHHHHHHcCCeEEEEeeCC
Q 015338 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFPS--GIKALADYVHGKGLKLGIYSDAG 179 (408)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~-----~~d~~~FP~--Glk~l~~~ih~~G~k~Glw~~pg 179 (408)
-+.|.+.+|.+ +++|++.|.|=--+.... ...|.. .+|+ +|.. .++.|++.+|++||++=+=+.+.
T Consensus 3 ~~gi~~kLdyl-----~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 3 FRGIIDKLDYL-----KDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp HHHHHHTHHHH-----HHHTESEEEESS-EESSS-STTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred HHHHHHhhHHH-----HHcCCCceeccccccccc-ccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeecc
Confidence 35677778888 778998888754444321 222322 3554 5542 48999999999999987644321
Q ss_pred c-----------------------c---------c--------------------c---------CCCccchhhHHhHHH
Q 015338 180 V-----------------------F---------T--------------------C---------QVRPGSLFHEKDDAP 198 (408)
Q Consensus 180 ~-----------------------~---------~--------------------c---------~~~Pgs~~~~~~~~~ 198 (408)
. . . + ..+|.+++++...++
T Consensus 76 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 76 HTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp EEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhccccc
Confidence 0 0 0 0 123455666766777
Q ss_pred HHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceE
Q 015338 199 LFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFY 240 (408)
Q Consensus 199 ~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~ 240 (408)
.+.+.|||.+.+|...... .+....+.+++++..+.+++
T Consensus 156 ~w~~~giDGfR~D~~~~~~---~~~~~~~~~~~~~~~~~~~~ 194 (316)
T PF00128_consen 156 FWIEEGIDGFRLDAAKHIP---KEFWKEFRDEVKEEKPDFFL 194 (316)
T ss_dssp HHHHTTESEEEETTGGGSS---HHHHHHHHHHHHHHHTTSEE
T ss_pred chhhceEeEEEEccccccc---hhhHHHHhhhhhhhccccce
Confidence 7888999999999875432 24455666777655444443
No 97
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=46.90 E-value=38 Score=33.88 Aligned_cols=89 Identities=20% Similarity=0.099 Sum_probs=57.0
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeec---CCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPD---TITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPL 199 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d---~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~ 199 (408)
.+.|.+.++++|.|.... -+.+. .-..|. ++.+++.+|+.|-.++|+++... ......
T Consensus 190 ~~~Gad~I~i~dp~a~~~-----~lsp~~f~e~~~p~-~k~i~~~i~~~g~~~ilH~CG~~-------------~~~~~~ 250 (340)
T TIGR01463 190 VEAGADVIAIADPFASSD-----LISPETYKEFGLPY-QKRLFAYIKEIGGITVLHICGFT-------------QPILRD 250 (340)
T ss_pred HHcCCCEEEecCCccCcc-----ccCHHHHHHHHHHH-HHHHHHHHHhcCCceEEEECCCc-------------hhhHHH
Confidence 567999999999885421 11111 111243 89999999998877777654321 234667
Q ss_pred HHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEe
Q 015338 200 FASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (408)
Q Consensus 200 ~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s 241 (408)
+++.|+|-+-+|++.. +.++-+..|..+.+.
T Consensus 251 l~~~g~d~ls~d~~~~-----------l~~~~~~~g~~~~i~ 281 (340)
T TIGR01463 251 IANNGCFGFSVDMKPG-----------MDHAKRVIGGQASLV 281 (340)
T ss_pred HHHhCCCEEeecCCCC-----------HHHHHHHcCCceEEE
Confidence 7889999988887632 345555667665543
No 98
>PLN02784 alpha-amylase
Probab=46.76 E-value=1.5e+02 Score=34.11 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCe-----eecCCCCC--CCHHHHHHHHHHcCCeEE
Q 015338 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFP--SGIKALADYVHGKGLKLG 173 (408)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~-----~~d~~~FP--~Glk~l~~~ih~~G~k~G 173 (408)
...|.+.++.+ +++|+..|.|=--.... ...|.+ .+| .+|- ..|+.|++.+|++||++=
T Consensus 520 ~~~I~ekldyL-----~~LG~taIWLpP~~~s~--s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H~~GIkVI 585 (894)
T PLN02784 520 YMELGEKAAEL-----SSLGFTVVWLPPPTESV--SPEGYMPKDLYNLN-SRYGTIDELKDLVKSFHEVGIKVL 585 (894)
T ss_pred HHHHHHHHHHH-----HHhCCCEEEeCCCCCCC--CCCCcCcccccccC-cCcCCHHHHHHHHHHHHHCCCEEE
Confidence 57888889988 77888887764432221 112332 234 4665 259999999999999853
No 99
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=46.51 E-value=54 Score=33.71 Aligned_cols=86 Identities=24% Similarity=0.213 Sum_probs=56.3
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCC-eEEEEeeCCccccCCCccchhhHHhHHHHHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL-KLGIYSDAGVFTCQVRPGSLFHEKDDAPLFA 201 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~-k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~ 201 (408)
-++|.+-++|.|.|...- +. ...+.=.+| .++.+++.+++.+- .+=|++.-+.. .....++
T Consensus 199 i~aGAdavqifDsW~g~l-~~---~~~~~f~~~-~~~~i~~~vk~~~~~~pii~f~~ga~-------------~~l~~m~ 260 (352)
T COG0407 199 IEAGADAVQIFDSWAGVL-SM---IDYDEFVLP-YMKRIVREVKEVKGGVPVIHFCKGAG-------------HLLEDMA 260 (352)
T ss_pred HHhCCCEEEeeccccccC-Cc---ccHHHHhhh-HHHHHHHHHHHhCCCCcEEEECCCcH-------------HHHHHHH
Confidence 567889999999996531 11 112222344 48999999998776 35565554431 1466788
Q ss_pred HcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCC
Q 015338 202 SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (408)
Q Consensus 202 ~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~ 237 (408)
++|+|.+-+|+-.. +.+|-+..|..
T Consensus 261 ~~g~d~l~vdw~v~-----------l~~a~~~~~~~ 285 (352)
T COG0407 261 KTGFDVLGVDWRVD-----------LKEAKKRLGDK 285 (352)
T ss_pred hcCCcEEeeccccC-----------HHHHHHHhCCC
Confidence 99999999887643 45665555555
No 100
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.44 E-value=89 Score=32.13 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCCc-----------cCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-
Q 015338 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW-----------~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~- 168 (408)
..+|+++|.+.++.+++ ...+++|++-|.|=.+= .+.+.|.+|-=.-+..+| +..+++.|++.
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf---~~eii~air~~v 208 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRF---AAEVVKAIRAAV 208 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHc
Confidence 45888888888776554 23466899998887543 121345666444556677 57888888875
Q ss_pred C--CeEEEEeeCCccccC-CCccchhhH--HhHHHHHHHcCCcEEEee
Q 015338 169 G--LKLGIYSDAGVFTCQ-VRPGSLFHE--KDDAPLFASWGVDYLKYD 211 (408)
Q Consensus 169 G--~k~Glw~~pg~~~c~-~~Pgs~~~~--~~~~~~~~~wGvdylK~D 211 (408)
| +.+|+=+.+... +. ..++..... ...++.+.+.|+|||-+-
T Consensus 209 G~d~~v~vRis~~~~-~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs 255 (361)
T cd04747 209 GPDFPIILRFSQWKQ-QDYTARLADTPDELEALLAPLVDAGVDIFHCS 255 (361)
T ss_pred CCCCeEEEEECcccc-cccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4 678887765211 11 112222222 245666788999998663
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=45.21 E-value=1.5e+02 Score=29.75 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc
Q 015338 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~ 182 (408)
..++.+.+++.++.+ +++|...|.+- . |+.... | .+..++++++++|+++.|-+. |+.-
T Consensus 35 ~~l~~e~~~~ii~~~-----~~~g~~~v~~~----G------GEPll~----~-~~~~ii~~~~~~g~~~~l~TN-G~ll 93 (358)
T TIGR02109 35 AELTTEEWTDVLTQA-----AELGVLQLHFS----G------GEPLAR----P-DLVELVAHARRLGLYTNLITS-GVGL 93 (358)
T ss_pred CCCCHHHHHHHHHHH-----HhcCCcEEEEe----C------cccccc----c-cHHHHHHHHHHcCCeEEEEeC-CccC
Confidence 357888899999988 45666666652 1 334443 3 388999999999999888544 3210
Q ss_pred cCCCccchhhHHhHHHHHHHcCCcEEEeecCC
Q 015338 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 183 c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
-+..++.+++.|++.|.+.--.
T Consensus 94 ----------~~e~~~~L~~~g~~~v~iSldg 115 (358)
T TIGR02109 94 ----------TEARLDALADAGLDHVQLSFQG 115 (358)
T ss_pred ----------CHHHHHHHHhCCCCEEEEeCcC
Confidence 0245677788888888765543
No 102
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=44.91 E-value=68 Score=33.98 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=32.9
Q ss_pred CccchhhHHhHHHHHHH-cCCcEEEeecCCCCCCCcccccHHHHHHHHhcC-CCce
Q 015338 186 RPGSLFHEKDDAPLFAS-WGVDYLKYDNCFNLGIEPKKRYPPMRDALNETG-CSIF 239 (408)
Q Consensus 186 ~Pgs~~~~~~~~~~~~~-wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~G-r~i~ 239 (408)
+|.+++++...++.+.+ .|||.+.+|....-. ......+.+++++.. ++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~---~~f~~~~~~~~~~~~~~~~~ 259 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID---AWFIKEWIEHVREVAGKDLF 259 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC---HHHHHHHHHHHHHhcCCCeE
Confidence 35556666666676665 999999999875542 233456677776554 3443
No 103
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=44.50 E-value=1.2e+02 Score=30.69 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc
Q 015338 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~ 182 (408)
..++.+.+++.++.+ ++.|...|.+= . |+.... |+ +..++++++++|+.+.|-+.. +
T Consensus 44 ~~~~~e~~~~ii~~~-----~~~g~~~v~~~----G------GEPll~----~~-~~~il~~~~~~g~~~~i~TNG-~-- 100 (378)
T PRK05301 44 AELSTEEWIRVLREA-----RALGALQLHFS----G------GEPLLR----KD-LEELVAHARELGLYTNLITSG-V-- 100 (378)
T ss_pred CCCCHHHHHHHHHHH-----HHcCCcEEEEE----C------CccCCc----hh-HHHHHHHHHHcCCcEEEECCC-c--
Confidence 357888899999988 45566666552 1 333333 44 889999999999988775442 1
Q ss_pred cCCCccchhhH-HhHHHHHHHcCCcEEEeecCC
Q 015338 183 CQVRPGSLFHE-KDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 183 c~~~Pgs~~~~-~~~~~~~~~wGvdylK~D~~~ 214 (408)
.+ +..++.+++.|++.|.+..-.
T Consensus 101 ---------ll~~~~~~~L~~~g~~~v~iSldg 124 (378)
T PRK05301 101 ---------GLTEARLAALKDAGLDHIQLSFQD 124 (378)
T ss_pred ---------cCCHHHHHHHHHcCCCEEEEEecC
Confidence 11 235677888899888765544
No 104
>PLN02877 alpha-amylase/limit dextrinase
Probab=43.86 E-value=94 Score=36.19 Aligned_cols=86 Identities=21% Similarity=0.233 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCeEEEEee--------------------CCc------------cccCC-----CccchhhHHhHHHHH
Q 015338 158 IKALADYVHGKGLKLGIYSD--------------------AGV------------FTCQV-----RPGSLFHEKDDAPLF 200 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~--------------------pg~------------~~c~~-----~Pgs~~~~~~~~~~~ 200 (408)
+|.|++.+|++||++=+=+- |+. .+|.. +|-+..++-..++.+
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW 547 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNW 547 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999643211 110 13422 233445554445554
Q ss_pred -HHcCCcEEEeecCCCCCCCcccccHHHHHHHHhc--------CCCceEeeCCCC
Q 015338 201 -ASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNET--------GCSIFYSLCEWG 246 (408)
Q Consensus 201 -~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~--------Gr~i~~s~c~~g 246 (408)
.++|||.+.+|-...... +....++++|++. |+.|++-.-.|.
T Consensus 548 ~~ey~VDGFRFDlmg~i~~---~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 548 AVNYKVDGFRFDLMGHLMK---RTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHhCCCEEEEEccccccH---HHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 489999999998866532 2234455555544 577877655663
No 105
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.86 E-value=42 Score=32.44 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++.+|++|+++.+|+ ++.. + --...++.+.++|||.|=.|+.
T Consensus 213 ~~~v~~~~~~Gl~v~~wT-~~~~-~--------n~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 213 EEFVKKAHENGLKVMTYF-DEPV-N--------DNEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHHHcCCEEEEec-CCCC-C--------CCHHHHHHHHHcCCCEEEcCCH
Confidence 578999999999999997 3210 1 0034677788999999988864
No 106
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=43.66 E-value=40 Score=32.18 Aligned_cols=87 Identities=10% Similarity=0.086 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCc--cc--cCCCc-cchhhHHhHHHHHHHcCCcEEEeecCCCCCC------CcccccH
Q 015338 157 GIKALADYVHGKGLKLGIYSDAGV--FT--CQVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------EPKKRYP 225 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~pg~--~~--c~~~P-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~------~~~~~Y~ 225 (408)
-.+..+..+|++|.|+=+-+.-.. .. ....+ +...|.+...+.+.++|+|.|=+|+-+.... ...+.|.
T Consensus 52 ~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~ 131 (255)
T cd06542 52 NKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFV 131 (255)
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHH
Confidence 467788889999999755443211 11 11222 2456778888899999999999999765431 1235566
Q ss_pred HHHHHHHhc-CC-CceEeeC
Q 015338 226 PMRDALNET-GC-SIFYSLC 243 (408)
Q Consensus 226 ~m~~AL~~~-Gr-~i~~s~c 243 (408)
.+.++|++. ++ ..++++.
T Consensus 132 ~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 132 RLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred HHHHHHHHHhCcCCcEEEEE
Confidence 677777644 32 4455543
No 107
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=42.68 E-value=53 Score=30.16 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccH----HHHHHHH
Q 015338 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYP----PMRDALN 232 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~----~m~~AL~ 232 (408)
.++.+...+++.|.+++| +- ++.-...+..+.++.+||||+|............+. .+....+
T Consensus 133 ~~~~~~~~l~~~G~~l~l--d~-----------~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 199 (240)
T cd01948 133 EALATLRRLRALGVRIAL--DD-----------FGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH 199 (240)
T ss_pred HHHHHHHHHHHCCCeEEE--eC-----------CCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH
Confidence 388999999999999887 11 111123457788999999999976543322212222 3333334
Q ss_pred hcCCCceEeeC
Q 015338 233 ETGCSIFYSLC 243 (408)
Q Consensus 233 ~~Gr~i~~s~c 243 (408)
..|-+++.+..
T Consensus 200 ~~~~~via~gV 210 (240)
T cd01948 200 SLGLKVVAEGV 210 (240)
T ss_pred HCCCeEEEEec
Confidence 55667776643
No 108
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.61 E-value=42 Score=31.54 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc
Q 015338 158 IKALADYVHGKGLKLGIYSDAGV 180 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~ 180 (408)
+..+.+++|++|+|+||-+.|++
T Consensus 94 ~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 94 PKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp HHHHHHHHHHTTSEEEEEE-TTS
T ss_pred HHHHHHHHHHhCCCEEEEEECCC
Confidence 78999999999999999999986
No 109
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=42.47 E-value=85 Score=35.89 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCee-----ecCCCCC--CCHHHHHHHHHHcCCeEEEE
Q 015338 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFP--SGIKALADYVHGKGLKLGIY 175 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-----~d~~~FP--~Glk~l~~~ih~~G~k~Glw 175 (408)
.+.+-+.+.+.++.+ +++|+..|.|=--+........|... +|+ .|. ++++.|++.+|++||++-+=
T Consensus 11 ~~~tf~~~~~~L~YL-----~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp-~lGt~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 11 AGFTFDDAAALLPYL-----KSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINP-ELGGEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred CCCCHHHHHHhhHHH-----HHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 467888899999999 78899888775544432122234433 332 333 36999999999999997664
Q ss_pred eeC
Q 015338 176 SDA 178 (408)
Q Consensus 176 ~~p 178 (408)
+-|
T Consensus 85 iVp 87 (825)
T TIGR02401 85 IVP 87 (825)
T ss_pred ecc
Confidence 433
No 110
>PRK08227 autoinducer 2 aldolase; Validated
Probab=42.41 E-value=1.1e+02 Score=30.21 Aligned_cols=71 Identities=13% Similarity=-0.051 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~ 237 (408)
+..+++..|+.||-.-+|+..|.. . ....+++...++.=+|.|-|.||..++. ..|.+..+++..|
T Consensus 129 l~~v~~ea~~~G~Plla~~prG~~-~---~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~vP 194 (264)
T PRK08227 129 IIQLVDAGLRYGMPVMAVTAVGKD-M---VRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPVP 194 (264)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCC-c---CchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCCc
Confidence 788889999999988777644432 1 1123366666777789999999999972 4567777877788
Q ss_pred ceEee
Q 015338 238 IFYSL 242 (408)
Q Consensus 238 i~~s~ 242 (408)
+++..
T Consensus 195 VviaG 199 (264)
T PRK08227 195 IVIAG 199 (264)
T ss_pred EEEeC
Confidence 88653
No 111
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=42.29 E-value=1e+02 Score=31.33 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHH--cCCccCCceEEEeCCC-----------ccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-CC
Q 015338 105 ISETIIKETADALVS--TGLAELGYDHVNIDDC-----------WSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GL 170 (408)
Q Consensus 105 i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG-----------W~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~-G~ 170 (408)
+|+++|.+.++.+++ ...+++|++-|.|=.+ ..+.+.|.+|-=.-+..+| +..+++.|++. ++
T Consensus 132 mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf---~~eii~~ir~~~~~ 208 (337)
T PRK13523 132 MTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRF---LREIIDAVKEVWDG 208 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHH---HHHHHHHHHHhcCC
Q ss_pred eEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEe
Q 015338 171 KLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (408)
Q Consensus 171 k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~ 210 (408)
.+|+=+.+.-..-.+.. .+-....++.+.+.|+|||-+
T Consensus 209 ~v~vRis~~d~~~~G~~--~~e~~~i~~~l~~~gvD~i~v 246 (337)
T PRK13523 209 PLFVRISASDYHPGGLT--VQDYVQYAKWMKEQGVDLIDV 246 (337)
T ss_pred CeEEEecccccCCCCCC--HHHHHHHHHHHHHcCCCEEEe
No 112
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=41.94 E-value=46 Score=32.25 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++.+|++|+++.+|+--.. ..++.+.+||||+|=.|+-
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd~--------------~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLNDE--------------EDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECCH--------------HHHHHHHhcCCCEEEeCCc
Confidence 6799999999999999985421 2578899999999988864
No 113
>PRK09936 hypothetical protein; Provisional
Probab=41.55 E-value=50 Score=33.08 Aligned_cols=62 Identities=24% Similarity=0.465 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCC--CC-HHHHHHHHHHcCCe--EEEEee
Q 015338 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP--SG-IKALADYVHGKGLK--LGIYSD 177 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP--~G-lk~l~~~ih~~G~k--~Glw~~ 177 (408)
.+++.+.......++ +..|++.+++ -|... +++ .|+ +| |..+.+..+++||| +|||++
T Consensus 33 ~~~~~~qWq~~~~~~-----~~~G~~tLiv--QWt~y-G~~---------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 33 SQVTDTQWQGLWSQL-----RLQGFDTLVV--QWTRY-GDA---------DFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred CCCCHHHHHHHHHHH-----HHcCCcEEEE--Eeeec-cCC---------CcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 367888889988888 6778889888 48653 232 232 12 77788888999998 699999
Q ss_pred CCcc
Q 015338 178 AGVF 181 (408)
Q Consensus 178 pg~~ 181 (408)
|...
T Consensus 96 p~y~ 99 (296)
T PRK09936 96 PEFF 99 (296)
T ss_pred hHHH
Confidence 9753
No 114
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=41.47 E-value=1.1e+02 Score=28.04 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=56.7
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~ 202 (408)
+..|++++.|-. .+. .| ..|+ -...-.+..++.||+.|+|+-+-..+| ....+-.+..++.++.
T Consensus 19 k~~g~~fv~ika-teg-----~~--~~D~-----~f~~n~~~A~~aGl~~G~Yhf~~~~~~---~~~~~Qa~~f~~~~~~ 82 (196)
T cd06416 19 KNNGYSFAIIRA-YRS-----NG--SFDP-----NSVTNIKNARAAGLSTDVYFFPCINCC---GSAAGQVQTFLQYLKA 82 (196)
T ss_pred HhCCceEEEEEE-Ecc-----CC--ccCh-----HHHHHHHHHHHcCCccceEEEecCCCC---CCHHHHHHHHHHHHHh
Confidence 556888888863 221 11 1453 367788889999999999987622110 1223334455666676
Q ss_pred cCCc--EEEeecCCCCC---CCc---ccccHHHHHHHHhcCCCceE
Q 015338 203 WGVD--YLKYDNCFNLG---IEP---KKRYPPMRDALNETGCSIFY 240 (408)
Q Consensus 203 wGvd--ylK~D~~~~~~---~~~---~~~Y~~m~~AL~~~Gr~i~~ 240 (408)
++.+ .|-+|.-.... .+. .+....+.+.+++.|...++
T Consensus 83 ~~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~i 128 (196)
T cd06416 83 NGIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGI 128 (196)
T ss_pred CCCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 6654 34466543211 111 22334566667767865443
No 115
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=41.15 E-value=39 Score=32.92 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
+.+++.+|+.|+++..|+..-.. ...++.+.+||||.|=.|+
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~~n~------------~~~~~~l~~~GVdgIiTD~ 281 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKLNND------------AEAVERQADLGVDGVIVDH 281 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCCCCC------------HHHHHHHHHcCCCEEEeCC
Confidence 46899999999999999852100 1257788999999998886
No 116
>PLN02803 beta-amylase
Probab=41.07 E-value=41 Score=36.32 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEE
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG 173 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~G 173 (408)
.+.+.+.+...+| |.+|++=|.+|-=|-.-++...+... | +|-+.|++-|++.|||+=
T Consensus 104 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p~~Yd-----W-sgY~~l~~mvr~~GLKlq 161 (548)
T PLN02803 104 NKPRAMNASLMAL-----RSAGVEGVMVDAWWGLVEKDGPMKYN-----W-EGYAELVQMVQKHGLKLQ 161 (548)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeccCCCCcCC-----c-HHHHHHHHHHHHcCCeEE
Confidence 3557778888887 78899999998544333333222211 1 379999999999999964
No 117
>PLN02801 beta-amylase
Probab=41.06 E-value=42 Score=36.03 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEE
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG 173 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~G 173 (408)
.+.+.+.+...+| |.+|++=|.+|-=|-.-++..-+.... +|-+.|++-|++.|||+=
T Consensus 34 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~P~~YdW------sgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 34 EDEEGLEKQLKRL-----KEAGVDGVMVDVWWGIVESKGPKQYDW------SAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCccCc------HHHHHHHHHHHHcCCeEE
Confidence 4567788888888 788999999985443333332222211 379999999999999973
No 118
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=40.93 E-value=74 Score=30.72 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHH----HHh
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDA----LNE 233 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~A----L~~ 233 (408)
.+.++..+|+.|.++.| +-+-.. ..-...+++..+|+||+|-..............+-++ ..+
T Consensus 138 ~~~~l~~L~~~G~~ial--DDFGtG-----------~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~ 204 (256)
T COG2200 138 ALALLRQLRELGVRIAL--DDFGTG-----------YSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHK 204 (256)
T ss_pred HHHHHHHHHHCCCeEEE--ECCCCC-----------HHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHH
Confidence 78899999999976654 332100 1135677889999999998765543322222333333 345
Q ss_pred cCCCceEeeC
Q 015338 234 TGCSIFYSLC 243 (408)
Q Consensus 234 ~Gr~i~~s~c 243 (408)
.|-.++.+.+
T Consensus 205 l~~~vvaEGV 214 (256)
T COG2200 205 LGLTVVAEGV 214 (256)
T ss_pred CCCEEEEeec
Confidence 5667776644
No 119
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=40.44 E-value=1.6e+02 Score=28.32 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCC--eEEEEeeCCcccc---------------CCCcc---------chhhHHhHHHHHHHcCCcE-EEe
Q 015338 158 IKALADYVHGKGL--KLGIYSDAGVFTC---------------QVRPG---------SLFHEKDDAPLFASWGVDY-LKY 210 (408)
Q Consensus 158 lk~l~~~ih~~G~--k~Glw~~pg~~~c---------------~~~Pg---------s~~~~~~~~~~~~~wGvdy-lK~ 210 (408)
+..+.++||+.|+ |+||=+.|++.-+ ..+|| +.+-+++..+...+.|.++ |-+
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 7889999999999 9999999986311 13454 2333344444555668766 677
Q ss_pred ecCCCCCCCcccccHHHHHHHHhcCCCceEee
Q 015338 211 DNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (408)
Q Consensus 211 D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~ 242 (408)
|.--.. .. ...+.++|.++++..
T Consensus 185 DGGI~~--------~t-i~~l~~aGaD~~V~G 207 (228)
T PRK08091 185 DGSMTL--------EL-ASYLKQHQIDWVVSG 207 (228)
T ss_pred ECCCCH--------HH-HHHHHHCCCCEEEEC
Confidence 864332 11 234556798988764
No 120
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=40.36 E-value=96 Score=35.74 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCee-----ecCCCCC--CCHHHHHHHHHHcCCeEEE
Q 015338 102 ACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFP--SGIKALADYVHGKGLKLGI 174 (408)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~-----~d~~~FP--~Glk~l~~~ih~~G~k~Gl 174 (408)
..+.+-+.+.+.++.+ +++|++.|.|=--+........|... +|+ .|. ++++.|++.+|++||++=+
T Consensus 14 ~~~~tf~~~~~~l~YL-----~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp-~lGt~e~f~~Lv~aah~~Gi~VIl 87 (879)
T PRK14511 14 HAGFTFDDAAELVPYF-----ADLGVSHLYLSPILAARPGSTHGYDVVDHTRINP-ELGGEEGLRRLAAALRAHGMGLIL 87 (879)
T ss_pred CCCCCHHHHHHHhHHH-----HHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3467889999999999 78899888775444331112223332 333 333 3699999999999999766
Q ss_pred EeeC
Q 015338 175 YSDA 178 (408)
Q Consensus 175 w~~p 178 (408)
=+-|
T Consensus 88 DiV~ 91 (879)
T PRK14511 88 DIVP 91 (879)
T ss_pred Eecc
Confidence 4444
No 121
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=40.20 E-value=1.1e+02 Score=30.95 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCC---------c--cCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-
Q 015338 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDC---------W--SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG---------W--~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~- 168 (408)
..+|+++|.+.++.+++ ...+++|++-|.|=.+ . .+.+.|.+|--.-+..+| +..+++.|++.
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~aIR~~v 201 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRF---PVEIVRAVRAAV 201 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 46889998888776654 2346689999998432 1 122335554333344555 46777888763
Q ss_pred C--CeEEEEeeCCccccCCCccch--hhHHhHHHHHHHcCCcEEEee
Q 015338 169 G--LKLGIYSDAGVFTCQVRPGSL--FHEKDDAPLFASWGVDYLKYD 211 (408)
Q Consensus 169 G--~k~Glw~~pg~~~c~~~Pgs~--~~~~~~~~~~~~wGvdylK~D 211 (408)
| +.+|+=+.+.- ..++.. +-....++.+.+.|+|||-+-
T Consensus 202 G~d~~v~iRi~~~D----~~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 202 GEDFIIIYRLSMLD----LVEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCCceEEEEecccc----cCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4 44555444311 111212 222356788899999999884
No 122
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=40.05 E-value=56 Score=31.99 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHc-CCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGK-GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~-G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++.+|++ |+++-.|+-... .+++.+.+||||.|=-|+-
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN~~--------------~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGINTA--------------DDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeCCH--------------HHHHHHHHcCCCEEEeCCc
Confidence 7789999999 999999986432 2578899999999988864
No 123
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=39.31 E-value=1.3e+02 Score=30.76 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCCc-----------cCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-
Q 015338 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW-----------~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~- 168 (408)
..+|+++|.+.++.+++ ...+++|++-|.|-.+= .+.+.|.+|-=.-|..|| +..+++.|++.
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf---~~Eiv~aVr~~v 223 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARL---VLEVVDAGIAEW 223 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHH---HHHHHHHHHHHc
Confidence 36888888888776543 23467899999886542 122335665544566788 46777777753
Q ss_pred CC-eEEEEeeCCccccCCCccchhhH---HhHHHHHHHcCCcEEEeec
Q 015338 169 GL-KLGIYSDAGVFTCQVRPGSLFHE---KDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 169 G~-k~Glw~~pg~~~c~~~Pgs~~~~---~~~~~~~~~wGvdylK~D~ 212 (408)
|= .+|+=+.+....+ ..++...-. ...++.+.+.|||||-+-.
T Consensus 224 g~~~igvRis~~~~~~-~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 224 GADRIGIRISPLGTFN-NVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred CCCeEEEEECCccccc-cCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 21 2677666532111 112212221 3456778889999998753
No 124
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=39.07 E-value=74 Score=29.22 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcc----cccHHHHHHHHh
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPK----KRYPPMRDALNE 233 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~----~~Y~~m~~AL~~ 233 (408)
....++.+++.|+++.| +-. +.-...+..+.+..+||||+|.......... .....+.+..+.
T Consensus 135 ~~~~i~~l~~~G~~ial--ddf-----------g~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~ 201 (241)
T smart00052 135 AVATLQRLRELGVRIAL--DDF-----------GTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQK 201 (241)
T ss_pred HHHHHHHHHHCCCEEEE--eCC-----------CCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHH
Confidence 55788999999999866 211 1111235677888999999998644322111 222344444456
Q ss_pred cCCCceEe
Q 015338 234 TGCSIFYS 241 (408)
Q Consensus 234 ~Gr~i~~s 241 (408)
.|-+++.+
T Consensus 202 ~~~~via~ 209 (241)
T smart00052 202 LGLQVVAE 209 (241)
T ss_pred CCCeEEEe
Confidence 67777766
No 125
>PLN00197 beta-amylase; Provisional
Probab=38.61 E-value=49 Score=35.89 Aligned_cols=58 Identities=22% Similarity=0.381 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEE
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG 173 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~G 173 (408)
.+.+.+.+...+| |.+|++=|.+|-=|-.-++...+... | +|-+.|++-|++.|||+=
T Consensus 124 ~~~~~l~~~L~~L-----K~~GVdGVmvDvWWGiVE~~~p~~Yd-----W-sgY~~L~~mvr~~GLKlq 181 (573)
T PLN00197 124 NRRKAMKASLQAL-----KSAGVEGIMMDVWWGLVERESPGVYN-----W-GGYNELLEMAKRHGLKVQ 181 (573)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCcCC-----c-HHHHHHHHHHHHcCCeEE
Confidence 4567788888888 78899999998544333333222211 1 379999999999999964
No 126
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=38.28 E-value=1.8e+02 Score=29.72 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCeEEEE--eeCCccccCCCc-----cchhhHHhHHHHHH--HcCCcEEEeecCCCC----CCC-cccc
Q 015338 158 IKALADYVHGKGLKLGIY--SDAGVFTCQVRP-----GSLFHEKDDAPLFA--SWGVDYLKYDNCFNL----GIE-PKKR 223 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw--~~pg~~~c~~~P-----gs~~~~~~~~~~~~--~wGvdylK~D~~~~~----~~~-~~~~ 223 (408)
++.+++.+++.||.+=+- .-|....- ... -.-+.+...++.+. +.|+|.+|+.+.... +.. ....
T Consensus 145 l~rv~~ec~~~giPlllE~l~y~~~~~~-~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~ 223 (340)
T PRK12858 145 VERVGAECRANDIPFFLEPLTYDGKGSD-KKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEA 223 (340)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCCccc-cccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccccccc
Confidence 677888888888887552 32211000 000 01134566678888 599999999987543 111 1122
Q ss_pred c------HHHHHHHHhcCCCceEe
Q 015338 224 Y------PPMRDALNETGCSIFYS 241 (408)
Q Consensus 224 Y------~~m~~AL~~~Gr~i~~s 241 (408)
| ..+.+..++++.|+++.
T Consensus 224 ~~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 224 YTQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred ccHHHHHHHHHHHHhhCCCCEEEE
Confidence 2 34666667788998874
No 127
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=38.08 E-value=1.7e+02 Score=29.93 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCC-CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcc
Q 015338 103 CNI-SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF 181 (408)
Q Consensus 103 ~~i-~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~ 181 (408)
|.+ +++.+++.|..++ ++|.+. +-.|=+. .|..-..++--. ..|++-|.++.++.|+.+-- ++
T Consensus 101 CsiEs~e~~~~~A~~lk-----~~ga~~--~r~~~fK-pRTsp~sf~G~g---~~gL~~L~~~~~~~Gl~v~t--ev--- 164 (335)
T PRK08673 101 CSVESEEQILEIARAVK-----EAGAQI--LRGGAFK-PRTSPYSFQGLG---EEGLKLLAEAREETGLPIVT--EV--- 164 (335)
T ss_pred CccCCHHHHHHHHHHHH-----Hhchhh--ccCcEec-CCCCCccccccc---HHHHHHHHHHHHHcCCcEEE--ee---
Confidence 443 8999999999994 444442 2222333 333211111100 24899999999999998752 22
Q ss_pred ccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEeeC
Q 015338 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLC 243 (408)
Q Consensus 182 ~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c 243 (408)
+-...++.+.+. +|++|+=.-... -..+.+++.++|.|++++.-
T Consensus 165 ----------~d~~~~~~l~~~-vd~lqIgAr~~~-------N~~LL~~va~~~kPViLk~G 208 (335)
T PRK08673 165 ----------MDPRDVELVAEY-VDILQIGARNMQ-------NFDLLKEVGKTNKPVLLKRG 208 (335)
T ss_pred ----------CCHHHHHHHHHh-CCeEEECccccc-------CHHHHHHHHcCCCcEEEeCC
Confidence 222356666777 899998543221 13456667777888888753
No 128
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=37.89 E-value=73 Score=30.47 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+-
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~--------------~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNE--------------KADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCC--------------HHHHHHHHhcCCCEEEeCCH
Confidence 579999999999999997431 23567788999999988864
No 129
>PLN02161 beta-amylase
Probab=37.58 E-value=51 Score=35.48 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEE
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG 173 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~G 173 (408)
+.+.+.+...+| |.+|++=|.+|-=|-.-++...+... | +|-+.|++-|++.|||+=
T Consensus 115 ~~~al~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p~~Yd-----W-sgY~~l~~mvr~~GLKlq 171 (531)
T PLN02161 115 RLKALTVSLKAL-----KLAGVHGIAVEVWWGIVERFSPLEFK-----W-SLYEELFRLISEAGLKLH 171 (531)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeecCCCCcCC-----c-HHHHHHHHHHHHcCCeEE
Confidence 455667777777 78899999998544333332222111 1 379999999999999964
No 130
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=37.51 E-value=24 Score=35.92 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEe-CCCccCCCCCCCCCeeecCCCCC-CCHHHHHHHHHHcCCeEEEEee
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNI-DDCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLGIYSD 177 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~i-DDGW~~~~rd~~G~~~~d~~~FP-~Glk~l~~~ih~~G~k~Glw~~ 177 (408)
-+++.+.+.++.| +++|++.|.| .=.|.. +.|.+.+|= +.|..+++.+++.|+++-|-+.
T Consensus 7 ~~~e~~~~d~~~m-----~~~G~n~vri~~~~W~~--------lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 7 WPEEEWEEDLRLM-----KEAGFNTVRIGEFSWSW--------LEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp S-CCHHHHHHHHH-----HHHT-SEEEE-CCEHHH--------H-SBTTB---HHHHHHHHHHHCTT-EEEEEEC
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEEechhh--------ccCCCCeeecHHHHHHHHHHHhccCeEEEEec
Confidence 4567888999999 7789999987 446754 233333321 1389999999999999988764
No 131
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=37.36 E-value=2.7e+02 Score=27.87 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCC--eEEEEeeCCcc
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL--KLGIYSDAGVF 181 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~--k~Glw~~pg~~ 181 (408)
.++.+.++..++.+ ++.|++.|.+=+ |..... | .+..+++++++.+. ++.|-++. .
T Consensus 44 ~ls~eei~~li~~~-----~~~Gv~~I~~tG----------GEPllr----~-dl~~li~~i~~~~~l~~i~itTNG-~- 101 (329)
T PRK13361 44 VLSLEELAWLAQAF-----TELGVRKIRLTG----------GEPLVR----R-GCDQLVARLGKLPGLEELSLTTNG-S- 101 (329)
T ss_pred CCCHHHHHHHHHHH-----HHCCCCEEEEEC----------cCCCcc----c-cHHHHHHHHHhCCCCceEEEEeCh-h-
Confidence 57889999999988 456777888732 333333 2 38889999988764 56664432 1
Q ss_pred ccCCCccchhhHHhHHHHHHHcCCcEEEe
Q 015338 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (408)
Q Consensus 182 ~c~~~Pgs~~~~~~~~~~~~~wGvdylK~ 210 (408)
.+...++.+++.|++.|-+
T Consensus 102 ----------ll~~~~~~L~~aGl~~v~I 120 (329)
T PRK13361 102 ----------RLARFAAELADAGLKRLNI 120 (329)
T ss_pred ----------HHHHHHHHHHHcCCCeEEE
Confidence 1223455566666665543
No 132
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=37.08 E-value=71 Score=30.18 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
+.+++.+|.+|+++.+|+--. ...++.+.++|||.|=-|+..
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~--------------~~~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTIND--------------LKDAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHcCCCEEEeCCCC
Confidence 679999999999999997432 236888999999999988753
No 133
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=36.57 E-value=1.9e+02 Score=26.44 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=40.5
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEe-eCCccccCCCccchhhHHhHHHHHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYS-DAGVFTCQVRPGSLFHEKDDAPLFA 201 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~-~pg~~~c~~~Pgs~~~~~~~~~~~~ 201 (408)
.++|.+++.+.... . +.-++.++++++++|+++|+-+ .|.+ ....++...
T Consensus 73 ~~~Gad~i~vh~~~-~----------------~~~~~~~i~~~~~~g~~~~~~~~~~~t------------~~~~~~~~~ 123 (206)
T TIGR03128 73 FAAGADIVTVLGVA-D----------------DATIKGAVKAAKKHGKEVQVDLINVKD------------KVKRAKELK 123 (206)
T ss_pred HHcCCCEEEEeccC-C----------------HHHHHHHHHHHHHcCCEEEEEecCCCC------------hHHHHHHHH
Confidence 55678888876321 0 0126889999999999999842 3321 122345557
Q ss_pred HcCCcEEEeec
Q 015338 202 SWGVDYLKYDN 212 (408)
Q Consensus 202 ~wGvdylK~D~ 212 (408)
+.|+||+|+..
T Consensus 124 ~~g~d~v~~~p 134 (206)
T TIGR03128 124 ELGADYIGVHT 134 (206)
T ss_pred HcCCCEEEEcC
Confidence 78999999964
No 134
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=36.51 E-value=64 Score=28.36 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEE
Q 015338 111 KETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIY 175 (408)
Q Consensus 111 ~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw 175 (408)
.+.+.++.+.|+++-=.=||-|| +..... + .+...=|- ++.+.+.|+..|.++|||
T Consensus 80 ~~A~~~A~~lG~p~gt~IYfavD--~d~~~~----~--~~~~i~~Y-~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 80 RDAVAAARALGFPAGTPIYFAVD--YDATDA----E--CDSAILPY-FRGWNSALGASGYRPGVY 135 (136)
T ss_dssp HHHHHHHHHTT--SS-EEEEE----TS-B-H----H---------H-HHHHHHHHGGGT-EEEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEEee--cCCCch----h--hhhHHHHH-HHHHHHHHhhCCCcceee
Confidence 34444555567776445688888 322111 1 11122222 899999999999999998
No 135
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=36.34 E-value=1.7e+02 Score=30.07 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCcc----chhhHHhHHHHHHHcCCcEEEeecCCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPG----SLFHEKDDAPLFASWGVDYLKYDNCFN 215 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pg----s~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (408)
+..+++..|+.||-.-+|.-|--.. ...++ +-+.+...++.=++.|.|.||..++..
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~-i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSA-FKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcc-cCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 7888899999999999988773211 12222 124556666777899999999999854
No 136
>PLN03244 alpha-amylase; Provisional
Probab=36.31 E-value=46 Score=37.83 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeeCC---------------c---------------ccc----CCCccchhhHHhHHHH-
Q 015338 155 PSGIKALADYVHGKGLKLGIYSDAG---------------V---------------FTC----QVRPGSLFHEKDDAPL- 199 (408)
Q Consensus 155 P~Glk~l~~~ih~~G~k~Glw~~pg---------------~---------------~~c----~~~Pgs~~~~~~~~~~- 199 (408)
|+.||.|||.+|++|+++=|=+-+. . ..| .++|.++.|+-.-+..
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 5579999999999999864432210 0 001 2456777787666666
Q ss_pred HHHcCCcEEEeecC
Q 015338 200 FASWGVDYLKYDNC 213 (408)
Q Consensus 200 ~~~wGvdylK~D~~ 213 (408)
+.+++||.+.+|..
T Consensus 520 leEyhIDGFRfDaV 533 (872)
T PLN03244 520 ITEYQIDGFQFHSL 533 (872)
T ss_pred HHHhCcCcceeecc
Confidence 45999999999975
No 137
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=36.26 E-value=1.2e+02 Score=30.80 Aligned_cols=102 Identities=18% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHH--cCCccCCceEEEeCC--Cc---------cCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-C
Q 015338 104 NISETIIKETADALVS--TGLAELGYDHVNIDD--CW---------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK-G 169 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDD--GW---------~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~-G 169 (408)
.+|.++|.+..+.+++ ...+++||+-|.|=. |+ .+.+.|.+|--.-+..+| +..+++.|++. |
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~vg 206 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRF---LLEVLAAVRAAVG 206 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHH---HHHHHHHHHHHcC
Q ss_pred CeEEEEeeCCccccCCCccchhhHHhHHHHHHHcC-CcEE
Q 015338 170 LKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWG-VDYL 208 (408)
Q Consensus 170 ~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wG-vdyl 208 (408)
..|-+-+--+.......--+.+-....++.+.+.| +|||
T Consensus 207 ~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i 246 (343)
T cd04734 207 PDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYV 246 (343)
T ss_pred CCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEE
No 138
>PLN02705 beta-amylase
Probab=36.22 E-value=53 Score=36.11 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEE
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG 173 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~G 173 (408)
.+.+.+.+...+| |.+|++=|.+|.=|-.-++...+... | +|-+.|++-|++.|||+=
T Consensus 265 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~~P~~Yd-----W-sgY~~L~~mvr~~GLKlq 322 (681)
T PLN02705 265 VDPEGVRQELSHM-----KSLNVDGVVVDCWWGIVEGWNPQKYV-----W-SGYRELFNIIREFKLKLQ 322 (681)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeEeecCCCCcCC-----c-HHHHHHHHHHHHcCCeEE
Confidence 4567788888888 78899999998544332332211111 1 379999999999999964
No 139
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=36.09 E-value=2.1e+02 Score=27.42 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccc---------------CCCcc--chhhHH-------hHHHHHHHcCCcE-EEeec
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTC---------------QVRPG--SLFHEK-------DDAPLFASWGVDY-LKYDN 212 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c---------------~~~Pg--s~~~~~-------~~~~~~~~wGvdy-lK~D~ 212 (408)
+..+.++||+.|+|+||=+.|++.-+ ...|| -+.|+. ...+.+.+.|.++ |-+|+
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDG 178 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG 178 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEEC
Confidence 78899999999999999999986321 23555 234443 2222333446654 56776
Q ss_pred CCCCCCCcccccHHHHHHHHhcCCCceEee
Q 015338 213 CFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (408)
Q Consensus 213 ~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~ 242 (408)
.-.. .-...+.++|.++++..
T Consensus 179 GI~~---------eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 179 GVKA---------DNIGAIAAAGADTFVAG 199 (223)
T ss_pred CCCH---------HHHHHHHHcCCCEEEEC
Confidence 4321 11234556688888764
No 140
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=35.88 E-value=61 Score=36.36 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCC
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg 179 (408)
.+|+.++..-+.+.+ -+..|+.+-||=-. .|..-..+.|+.+||+ -+.|.+.|.+||=|+-.=++|-
T Consensus 369 ~DE~DV~~Vd~~FDe---hdiP~DviWLDIEh----tdgKrYFTWDk~~FP~-P~~Ml~kLa~kgRklV~IvDPH 435 (915)
T KOG1066|consen 369 NDEEDVLTVDQGFDE---HDIPYDVIWLDIEH----TDGKRYFTWDKHKFPN-PKDMLKKLASKGRKLVTIVDPH 435 (915)
T ss_pred cchhhhhhhhcCccc---cCCccceEEEeeee----cCCceeEeeccccCCC-HHHHHHHHHhcCCceEEEeCcc
Confidence 567777776666644 34557778777433 3334468899999999 9999999999999998888873
No 141
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=35.74 E-value=1.1e+02 Score=28.02 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccH----HHHHHHHh
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYP----PMRDALNE 233 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~----~m~~AL~~ 233 (408)
+...++.+++.|++++|--- |. -....+.+..+.+||||+|.-...... ..... .+.+..+.
T Consensus 136 ~~~~l~~l~~~G~~i~ld~~-g~------------~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~ 201 (236)
T PF00563_consen 136 LLENLRRLRSLGFRIALDDF-GS------------GSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKS 201 (236)
T ss_dssp HHHHHHHHHHCT-EEEEEEE-TS------------TCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceeEeeec-cC------------Ccchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhc
Confidence 34667779999999987311 11 111356688999999999986554332 23333 34444456
Q ss_pred cCCCceEe
Q 015338 234 TGCSIFYS 241 (408)
Q Consensus 234 ~Gr~i~~s 241 (408)
.|-.++.+
T Consensus 202 ~~~~via~ 209 (236)
T PF00563_consen 202 LGIKVIAE 209 (236)
T ss_dssp TT-EEEEE
T ss_pred ccccccee
Confidence 67777766
No 142
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.64 E-value=2.2e+02 Score=29.25 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCC-CCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDL-KGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~-~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c 183 (408)
-+++.+++.|..+ ++.|..++- .|=+. .|.. ++..-+. -.|++-|.+..++.|+.+- +++
T Consensus 112 Es~eq~l~~A~~l-----k~~g~~~~r--~g~~k-pRtsp~sf~G~g----~~gl~~L~~~~~e~Gl~~~--tev----- 172 (352)
T PRK13396 112 ENEEMIVETAKRV-----KAAGAKFLR--GGAYK-PRTSPYAFQGHG----ESALELLAAAREATGLGII--TEV----- 172 (352)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEE--eeeec-CCCCCcccCCch----HHHHHHHHHHHHHcCCcEE--Eee-----
Confidence 4799999999998 445665533 34444 2322 2211111 1379999999999998874 232
Q ss_pred CCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEee
Q 015338 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (408)
Q Consensus 184 ~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~ 242 (408)
+-...++.+.+. +|++|+=..... . ..+.+++.++|.|++++.
T Consensus 173 --------~d~~~v~~~~~~-~d~lqIga~~~~------n-~~LL~~va~t~kPVllk~ 215 (352)
T PRK13396 173 --------MDAADLEKIAEV-ADVIQVGARNMQ------N-FSLLKKVGAQDKPVLLKR 215 (352)
T ss_pred --------CCHHHHHHHHhh-CCeEEECccccc------C-HHHHHHHHccCCeEEEeC
Confidence 222356667777 899998543221 1 345566667777777764
No 143
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=34.93 E-value=1.1e+02 Score=30.11 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc---------cccCCCccch-hhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHH
Q 015338 158 IKALADYVHGKGLKLGIYSDAGV---------FTCQVRPGSL-FHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPM 227 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~---------~~c~~~Pgs~-~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m 227 (408)
...+++..|++|+|.=+-+.-.. ......|..+ .+++..++.+.++|+|.|-+|+-+.... ..+.|..+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~-d~~~~~~f 125 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPPE-DREAYTQF 125 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHH-HHHHHHHH
Confidence 36789999999999765543110 1113445544 4678888999999999999999765322 23445544
Q ss_pred ----HHHHHhcCCCceEeeC
Q 015338 228 ----RDALNETGCSIFYSLC 243 (408)
Q Consensus 228 ----~~AL~~~Gr~i~~s~c 243 (408)
+++|.+.|. .++++
T Consensus 126 l~~lr~~l~~~~~--~lsv~ 143 (313)
T cd02874 126 LRELSDRLHPAGY--TLSTA 143 (313)
T ss_pred HHHHHHHhhhcCc--EEEEE
Confidence 444544443 44443
No 144
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=34.78 E-value=1.3e+02 Score=30.03 Aligned_cols=101 Identities=17% Similarity=0.069 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHH--cCCccCCceEEEeCCC-ccCCCCCCCCCeeecCCCCCCCHHHHHHHHHH--cCCeEEEEeeCCcc
Q 015338 107 ETIIKETADALVS--TGLAELGYDHVNIDDC-WSSPLRDLKGQLVPDTITFPSGIKALADYVHG--KGLKLGIYSDAGVF 181 (408)
Q Consensus 107 e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG-W~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~--~G~k~Glw~~pg~~ 181 (408)
++.+.+.|+++.+ ..|.++|..+++||+- |.. ..+. . .+ +..=..++.+.+.+++ .+++.+++++.|..
T Consensus 147 ~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~-~~~~--~--~~-~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~ 220 (332)
T cd03311 147 EELAMDLALALREEIRDLYDAGCRYIQIDEPALAE-GLPL--E--PD-DLAADYLKWANEALADRPDDTQIHTHICYGNF 220 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhc-cCCc--c--cH-HHHHHHHHHHHHHHHhCCCCCEEEEEEECCCC
Confidence 3455555554433 2457789999999996 332 1111 0 00 0000135667777765 35788887766542
Q ss_pred ccCCCccchhhHHhHHHHHHHcCCcEEEeecCCC
Q 015338 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (408)
Q Consensus 182 ~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (408)
.-. +- +..-+...+..+.+-++|.+-+|+...
T Consensus 221 ~~~-~~-~~~~y~~i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 221 RST-WA-AEGGYEPIAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred ccc-cc-ccCcHHHHHHHHHhCCCCEEEEEEcCC
Confidence 111 11 122234556777788899999999753
No 145
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=34.34 E-value=69 Score=30.64 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
+.+++.+|++|+++..|+-.. ...++.+.++|||+|=.|.-.
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~--------------~~~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVND--------------PARARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHcCCCEEEeCChH
Confidence 679999999999999997432 125778899999999988753
No 146
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=34.31 E-value=3e+02 Score=26.99 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=45.4
Q ss_pred CCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHH-cCCeEEEEeeCCccccCCCccchhhHHhHHHH
Q 015338 121 GLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPL 199 (408)
Q Consensus 121 gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~-~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~ 199 (408)
-|+++|..+|+|||--...... + .+...| -++.+.+.+++ .|...+|. .|.. .....
T Consensus 159 ~l~~~G~~~iqidEP~l~~~~~--s----~~~~~~-~~~~~~~~~~~~~~~~~~lH------ic~~---------~~~~~ 216 (321)
T cd03310 159 ELKNRGIVVVQIDEPSLGAVGA--G----AFEDLE-IVDAALEEVSLKSGGDVEVH------LCAP---------LDYEA 216 (321)
T ss_pred HHHhcCCcEEEeCCCccccccc--c----ccchHH-HHHHHHHHHhhccCCceEEE------ECCC---------CCHHH
Confidence 3577899999999865442111 1 000111 26677777765 44455664 4532 23556
Q ss_pred HHHcCCcEEEeecCCCC
Q 015338 200 FASWGVDYLKYDNCFNL 216 (408)
Q Consensus 200 ~~~wGvdylK~D~~~~~ 216 (408)
+.+-|+|.|-+|++...
T Consensus 217 l~~~~vd~l~~D~~~~~ 233 (321)
T cd03310 217 LLELGVDVIGFDAAALP 233 (321)
T ss_pred HHhCCCCEEEEecccCc
Confidence 77889999999998654
No 147
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=34.22 E-value=88 Score=27.70 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
..+++.+|+.|+++..|+-.. ...++.+.++|||.|=.|+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~--------------~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVND--------------PEDARRLLALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCC--------------HHHHHHHHHCCCCEEecCC
Confidence 678999999999999997532 3367778899999987764
No 148
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=34.16 E-value=64 Score=30.26 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
+.+++.+|++|+++.+|+-.. ...++.+.++|||.|=.|+
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~--------------~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNE--------------EEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCC--------------HHHHHHHHHCCCCEEeCCC
Confidence 679999999999999998431 1356778889999998775
No 149
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.81 E-value=64 Score=30.59 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=30.6
Q ss_pred HHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 161 LADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 161 l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
.++.+|++|+++..|+-... ..++.+.+||||+|=-|+
T Consensus 191 ~v~~~~~~G~~v~vWTVn~~--------------~~~~~l~~~GVdgiiTD~ 228 (229)
T cd08581 191 DTGDLWAGTWKWVIYEVNEP--------------AEALALAARGVALIETDN 228 (229)
T ss_pred hhHHHHhCCceEEEEEcCCH--------------HHHHHHHHhCCcEEEcCC
Confidence 46679999999999996532 257888999999997775
No 150
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.55 E-value=69 Score=30.12 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
..+++.+|++|+++.+|+-... ..++.+.++|||+|=.|+-
T Consensus 191 ~~~v~~~~~~G~~v~~wTvn~~--------------~~~~~l~~~GVdgi~TD~p 231 (233)
T cd08582 191 PAFIKALRDAGLKLNVWTVDDA--------------EDAKRLIELGVDSITTNRP 231 (233)
T ss_pred HHHHHHHHHCCCEEEEEeCCCH--------------HHHHHHHHCCCCEEEcCCC
Confidence 6799999999999999985422 2467778899999988864
No 151
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=33.28 E-value=78 Score=32.27 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCeE-EEEeeCC---cccc----CC-CccchhhHHhHHHHHHHcCCcEEEeecCCCC-CCCcccccHHHH
Q 015338 159 KALADYVHGKGLKL-GIYSDAG---VFTC----QV-RPGSLFHEKDDAPLFASWGVDYLKYDNCFNL-GIEPKKRYPPMR 228 (408)
Q Consensus 159 k~l~~~ih~~G~k~-Glw~~pg---~~~c----~~-~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~-~~~~~~~Y~~m~ 228 (408)
..+++..|..|.|+ |..+.+. ...| .. ..+.+.+.+.+++..+.+|||.+=+|+-... .....+++..+.
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 67889999999996 5444332 2223 23 4567778899999999999999999996655 233345566555
Q ss_pred HHHHh
Q 015338 229 DALNE 233 (408)
Q Consensus 229 ~AL~~ 233 (408)
+.|.+
T Consensus 129 ~~L~~ 133 (339)
T cd06547 129 RYLKA 133 (339)
T ss_pred HHHHH
Confidence 55543
No 152
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.10 E-value=1.5e+02 Score=30.01 Aligned_cols=103 Identities=23% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCC--------cc---CCCCCCC-CCeeecCCCCCCCHHHHHHHHHH-
Q 015338 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDC--------WS---SPLRDLK-GQLVPDTITFPSGIKALADYVHG- 167 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDG--------W~---~~~rd~~-G~~~~d~~~FP~Glk~l~~~ih~- 167 (408)
..+|+++|.+.++.+++ ...+++|++-|.|=.+ .. +.+.|.+ |.+ -|..+| +..+++.|++
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGsl-enR~r~---~~eii~~vr~~ 207 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSL-ENRMRF---PLAVVKAVQEV 207 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcH-HHHHHH---HHHHHHHHHHH
Confidence 56888888887776544 2346689999988654 22 2123555 454 366677 5677777775
Q ss_pred ------cCCeEEEEeeCCccccCCCccchhhH--HhHHHHHHHcCCcEEEeecC
Q 015338 168 ------KGLKLGIYSDAGVFTCQVRPGSLFHE--KDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 168 ------~G~k~Glw~~pg~~~c~~~Pgs~~~~--~~~~~~~~~wGvdylK~D~~ 213 (408)
..+.+|+=+.+... .+|..... ...++.+.+.|+|||-+...
T Consensus 208 vg~~~~~~~~v~~R~s~~~~----~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 208 IDKHADKDFILGYRFSPEEP----EEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred hccccCCCceEEEEECcccc----cCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 34666666554221 12222222 35678889999999998753
No 153
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=32.81 E-value=67 Score=29.90 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
+.+++.+|++|+++.+|+-.. ...++.+.++|||+|=.|+
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn~--------------~~~~~~~~~~Gvd~i~TD~ 219 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVND--------------PDDMQRYLAMGVDGIITDY 219 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCCC--------------HHHHHHHHHcCCCEEeCCC
Confidence 579999999999999996321 1246778899999997775
No 154
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=32.58 E-value=1.2e+02 Score=30.25 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccch--hhHHhHHHHHHHcCCcEEEeecCC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSL--FHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~--~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
+.+++.+|+.|+++-+|+--.... .-+..+ .......+.+.++|||.|=-|+-.
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~~~--~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~ 295 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNEFV--SLAFDFFADPTVEINSYVQGAGVDGFITEFPA 295 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCCcc--ccchhccCCHHHHHHHHHHHcCCCEEEecCch
Confidence 379999999999999998542100 001111 122345677889999999998753
No 155
>PLN02905 beta-amylase
Probab=32.50 E-value=65 Score=35.57 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEE
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG 173 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~G 173 (408)
.+.+.+.+...+| |.+|++=|.+|-=|-.-++...+... | +|-+.|++-|++.|||+=
T Consensus 283 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~gP~~Yd-----W-sgY~~L~~mvr~~GLKlq 340 (702)
T PLN02905 283 ADPDGLLKQLRIL-----KSINVDGVKVDCWWGIVEAHAPQEYN-----W-NGYKRLFQMVRELKLKLQ 340 (702)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeecCCCCcCC-----c-HHHHHHHHHHHHcCCeEE
Confidence 3566777777777 78899999998444332332211111 1 379999999999999964
No 156
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=32.12 E-value=74 Score=31.47 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++.+|+.|+++.+|+--.. ..++.+.+||||.|=.|+-
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~--------------~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDE--------------EEFERAFELGADGVMTDYP 291 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCH--------------HHHHHHHhcCCCEEEeCCH
Confidence 6799999999999999974321 3578888999999988864
No 157
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=31.97 E-value=96 Score=34.74 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC-------------------------------Cc----ccc-----CCCccchhhHHhH
Q 015338 157 GIKALADYVHGKGLKLGIYSDA-------------------------------GV----FTC-----QVRPGSLFHEKDD 196 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~p-------------------------------g~----~~c-----~~~Pgs~~~~~~~ 196 (408)
.+|.|++.+|++||++=|=+-. +. ..| ..+|.+++|+...
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~ 325 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDS 325 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHH
Confidence 4999999999999996432111 00 112 2367778888766
Q ss_pred HHHHH-HcCCcEEEeecCCCCCCCc--ccccHHHHHHHHh
Q 015338 197 APLFA-SWGVDYLKYDNCFNLGIEP--KKRYPPMRDALNE 233 (408)
Q Consensus 197 ~~~~~-~wGvdylK~D~~~~~~~~~--~~~Y~~m~~AL~~ 233 (408)
++.+. ++|||.+.+|....-+... ...-..+.++|++
T Consensus 326 l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 326 LRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 77665 8999999999865433211 1122456677765
No 158
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=31.12 E-value=3.2e+02 Score=27.23 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC--CccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCC--cccccHHHHHHHH
Q 015338 157 GIKALADYVHGKGLKLGIYSDA--GVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIE--PKKRYPPMRDALN 232 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~p--g~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~Y~~m~~AL~ 232 (408)
.+..-+..++++|.|+-|=+-- +.....+...+..+.+...+.+..||+|.|-+|.-+....+ ..++..+..+.|+
T Consensus 55 ~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq 134 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQ 134 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHH
Confidence 4677788999999987775422 11100111223445566677788999999999987654222 1233334444555
Q ss_pred hcCCCceEeeC
Q 015338 233 ETGCSIFYSLC 243 (408)
Q Consensus 233 ~~Gr~i~~s~c 243 (408)
+..+++.+++.
T Consensus 135 ~~~p~l~vs~T 145 (294)
T cd06543 135 KEYPDLKISFT 145 (294)
T ss_pred HHCCCcEEEEe
Confidence 55566777754
No 159
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=30.94 E-value=91 Score=31.59 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=63.9
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeee--cCCCCCCCHHHHHHHHHHcCCeEEE-------EeeCCccccCCCcc-----
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVP--DTITFPSGIKALADYVHGKGLKLGI-------YSDAGVFTCQVRPG----- 188 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~--d~~~FP~Glk~l~~~ih~~G~k~Gl-------w~~pg~~~c~~~Pg----- 188 (408)
+.+|+.||-|- -|-. .+|.+|.-.- +.+. .++-+++++.+.+|||+=+ |.+|+. ...|.
T Consensus 73 K~~GvNyvRlR-vwnd-P~dsngn~yggGnnD~--~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak---Q~kPkaW~~l 145 (403)
T COG3867 73 KNHGVNYVRLR-VWND-PYDSNGNGYGGGNNDL--KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK---QKKPKAWENL 145 (403)
T ss_pred HHcCcCeEEEE-EecC-CccCCCCccCCCcchH--HHHHHHHHHHHhcCcEEEeeccchhhccChhh---cCCcHHhhhc
Confidence 77899998885 5766 4555543211 0000 1367889999999999875 445553 22333
Q ss_pred --------chhhHHhHHHHHHHcCCc--EEEeecCCCCCCC---c-ccccHHHHH-------HHHhcCCCceEeeC
Q 015338 189 --------SLFHEKDDAPLFASWGVD--YLKYDNCFNLGIE---P-KKRYPPMRD-------ALNETGCSIFYSLC 243 (408)
Q Consensus 189 --------s~~~~~~~~~~~~~wGvd--ylK~D~~~~~~~~---~-~~~Y~~m~~-------AL~~~Gr~i~~s~c 243 (408)
.++|-+..+++++.-||+ .|.+-.-...+.- . ...+..|.+ |++++.+.|.+.++
T Consensus 146 ~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lH 221 (403)
T COG3867 146 NFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALH 221 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEE
Confidence 345556677889988874 4444433322211 1 114444443 44555566555543
No 160
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=30.61 E-value=94 Score=28.86 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+
T Consensus 189 ~~~v~~~~~~g~~v~~wTvn~--------------~~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTVND--------------PARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHCCCCEEEcCC
Confidence 579999999999999996421 1356778899999998775
No 161
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=30.59 E-value=4.4e+02 Score=24.34 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHcCCccCCceEEEeCCCccCC--CCCCCCCeeecCCCCCCCHHHHHHHHHHc-CCeEEEEeeCCccc
Q 015338 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSP--LRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSDAGVFT 182 (408)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~--~rd~~G~~~~d~~~FP~Glk~l~~~ih~~-G~k~Glw~~pg~~~ 182 (408)
+.+.+.+.|..+ +++|++-|.|-.|--.. ..|.+|.-..+..+| +..+++.+++. ++.+.+-...+..
T Consensus 65 ~~~~~~~aa~~~-----~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~---~~eii~~v~~~~~~~v~vk~r~~~~- 135 (231)
T cd02801 65 DPETLAEAAKIV-----EELGADGIDLNMGCPSPKVTKGGAGAALLKDPEL---VAEIVRAVREAVPIPVTVKIRLGWD- 135 (231)
T ss_pred CHHHHHHHHHHH-----HhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHH---HHHHHHHHHHhcCCCEEEEEeeccC-
Confidence 577888888877 56789888887553111 123344332222222 67788888653 3344443333221
Q ss_pred cCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 183 c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
+ ..-....++.+.+.|+|+|.+..
T Consensus 136 ----~--~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 136 ----D--EEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred ----C--chHHHHHHHHHHHhCCCEEEECC
Confidence 0 12334567788999999998754
No 162
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.54 E-value=91 Score=29.64 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++++|+.|+++.+|+-... ..++.+.++|||+|=.|+-
T Consensus 202 ~~~v~~~~~~G~~v~vWTVN~~--------------~~~~~l~~~gVdgIiTD~p 242 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTVNDP--------------AEMRRLLDLGVDGIITDRP 242 (249)
T ss_pred HHHHHHHHHCCCEEEEEecCCH--------------HHHHHHHhcCCCEEEcCCH
Confidence 6899999999999999985321 3677888999999988863
No 163
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=30.39 E-value=2.9e+02 Score=26.94 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHH-cCCeEEEEeeCCccc
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSDAGVFT 182 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~-~G~k~Glw~~pg~~~ 182 (408)
+.+++.+++.+-.| ..-||+-+.|-.| .|++|+.-.+ + .+...+++++ .|+++-
T Consensus 38 ~vt~~~l~k~~~el-----~kkGy~g~llSGG-----m~srg~VPl~--k----f~d~lK~lke~~~l~in--------- 92 (275)
T COG1856 38 KVTTKSLLKRCMEL-----EKKGYEGCLLSGG-----MDSRGKVPLW--K----FKDELKALKERTGLLIN--------- 92 (275)
T ss_pred ccchHHHHHHHHHH-----HhcCceeEEEeCC-----cCCCCCccHH--H----HHHHHHHHHHhhCeEEE---------
Confidence 46777788877777 4568999999644 3444554332 2 3444444443 344431
Q ss_pred cCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCC--------CcccccHHHHHHHHhcCCCceE
Q 015338 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI--------EPKKRYPPMRDALNETGCSIFY 240 (408)
Q Consensus 183 c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~--------~~~~~Y~~m~~AL~~~Gr~i~~ 240 (408)
| |-|..+ +.+++.|++-++|-+-+||.+..+. ...+.|-+-.+-|.+.|-.++.
T Consensus 93 a--HvGfvd--E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvp 154 (275)
T COG1856 93 A--HVGFVD--ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVP 154 (275)
T ss_pred E--Eeeecc--HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceece
Confidence 2 333333 6789999999999999999865421 1245676666667777755443
No 164
>PRK08508 biotin synthase; Provisional
Probab=29.96 E-value=1.8e+02 Score=28.45 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEe-CCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNI-DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~i-DDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c 183 (408)
++.+.|++.|..+. +.|+..|++ ++ +... +...|. =+..+++.|++.+....++...|..+
T Consensus 40 ~s~eeI~~~a~~a~-----~~g~~~~~lv~s-g~~~----------~~~~~e-~~~ei~~~ik~~~p~l~i~~s~G~~~- 101 (279)
T PRK08508 40 KDIEQIVQEAKMAK-----ANGALGFCLVTS-GRGL----------DDKKLE-YVAEAAKAVKKEVPGLHLIACNGTAS- 101 (279)
T ss_pred CCHHHHHHHHHHHH-----HCCCCEEEEEec-cCCC----------CcccHH-HHHHHHHHHHhhCCCcEEEecCCCCC-
Confidence 78999999999884 456666655 43 2221 001111 26777888998876666665544321
Q ss_pred CCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 184 ~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
...++.+++.|+|.+-++.
T Consensus 102 ----------~e~l~~Lk~aGld~~~~~l 120 (279)
T PRK08508 102 ----------VEQLKELKKAGIFSYNHNL 120 (279)
T ss_pred ----------HHHHHHHHHcCCCEEcccc
Confidence 4567888999999888764
No 165
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.65 E-value=80 Score=31.19 Aligned_cols=42 Identities=29% Similarity=0.330 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
+.+++.+|+.|+++..|+..... ...++.+.++|||.|-.|+
T Consensus 251 ~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~GVdgIiTD~ 292 (293)
T cd08572 251 PSLISLVKALGLVLFTYGDDNND------------PENVKKQKELGVDGVIYDR 292 (293)
T ss_pred cHHHHHHHHcCcEEEEECCCCCC------------HHHHHHHHHcCCCEEEecC
Confidence 57999999999999999872110 2357788999999999885
No 166
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=29.64 E-value=6e+02 Score=25.66 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCCc-----------cCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-
Q 015338 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW-----------~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~- 168 (408)
...|++.|.+.++.+++ ...+++|++-|.|-.+= .+.+.|.+|-=.-+..+| +..+++.|++.
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf---~~eii~air~~v 216 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARF---LLEVVDAVAEAI 216 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhH---HHHHHHHHHHHh
Confidence 45888888888776654 24467899999986442 232335554334455677 56788888763
Q ss_pred CC-eEEEEeeCCccccCCCcc--chhhHHhHHHHHHHcCCcEEEeec
Q 015338 169 GL-KLGIYSDAGVFTCQVRPG--SLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 169 G~-k~Glw~~pg~~~c~~~Pg--s~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
|- .+|+=+.+.... .+.++ ..+-....++.+.+.|+|||-+-.
T Consensus 217 g~d~v~vRis~~~~~-~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 217 GADRVGIRLSPFGTF-NDMGDSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred CCCceEEEECccccC-CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 54 355555443210 11111 122223567888899999999844
No 167
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=29.63 E-value=86 Score=30.17 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEee
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYD 211 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D 211 (408)
+.+++.+|+.|+++.+|+--.. ..++.+.++|||.|=-|
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~~--------------~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNEP--------------WLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCCH--------------HHHHHHHHcCCCEEecC
Confidence 5799999999999999986432 25778889999998665
No 168
>PRK12677 xylose isomerase; Provisional
Probab=29.49 E-value=38 Score=35.08 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcC--CeEEE
Q 015338 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKG--LKLGI 174 (408)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G--~k~Gl 174 (408)
+.+++.++.+ +++|.++|++=.|+.....+..-++.-.-++|-.+|+.+++|.+++| ++++|
T Consensus 114 ~~~~r~IdlA-----~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 114 RKVLRNIDLA-----AELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred HHHHHHHHHH-----HHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3466667777 67889999984444321111111222222455568999999998865 88776
No 169
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.43 E-value=78 Score=28.89 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=49.0
Q ss_pred HHHhcCceeeecCCCCCCHHHHHhhc-cHhhHhhhcCCCCcccEEeeecCCCCeEEEEEEcCCcEEEEEEcccCCceeee
Q 015338 318 WALMKAPLLIGCDVRNMTAETFEILS-NKEVIAVNQDPLGVQGRKVYVSGTDNCLQVFLISSYRILGLCCCPKFGIIFES 396 (408)
Q Consensus 318 wai~gsPL~ig~Dl~~l~~~~l~lL~-N~eviainQD~lG~~~~~v~~~~~~~~~~vw~l~~g~~aValfN~~~~~~~~~ 396 (408)
.++.+.-+.+|-|+ +++.+++.+ |.|=.+|+-|-| ++.... .+ +++|.+=.++.|+.+|++.+.
T Consensus 66 ~sm~~~e~vlGfDI---dpeALEIf~rNaeEfEvqidlL--qcdild-------le---~~~g~fDtaviNppFGTk~~~ 130 (185)
T KOG3420|consen 66 FSMPKNESVLGFDI---DPEALEIFTRNAEEFEVQIDLL--QCDILD-------LE---LKGGIFDTAVINPPFGTKKKG 130 (185)
T ss_pred hhcCCCceEEeeec---CHHHHHHHhhchHHhhhhhhee--eeeccc-------hh---ccCCeEeeEEecCCCCccccc
Confidence 46778888899887 688999986 777777765422 222211 11 667899999999999998888
Q ss_pred eeec
Q 015338 397 FQFK 400 (408)
Q Consensus 397 ~~~~ 400 (408)
+|.+
T Consensus 131 aDm~ 134 (185)
T KOG3420|consen 131 ADME 134 (185)
T ss_pred ccHH
Confidence 7753
No 170
>PRK06769 hypothetical protein; Validated
Probab=29.42 E-value=95 Score=27.93 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEee
Q 015338 153 TFPSGIKALADYVHGKGLKLGIYSD 177 (408)
Q Consensus 153 ~FP~Glk~l~~~ih~~G~k~Glw~~ 177 (408)
-|| |++++.+++|++|++++|=+.
T Consensus 29 ~~p-gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 29 LFP-FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred ECC-CHHHHHHHHHHCCCEEEEEEC
Confidence 455 699999999999999999664
No 171
>TIGR03586 PseI pseudaminic acid synthase.
Probab=29.24 E-value=1.8e+02 Score=29.46 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~ 237 (408)
.+.|.+|.+++|+.|- ++|+ -...++.+.+.|++.+|+=-..... ..+.+++.++|.|
T Consensus 79 ~~~L~~~~~~~Gi~~~--stpf-------------d~~svd~l~~~~v~~~KI~S~~~~n-------~~LL~~va~~gkP 136 (327)
T TIGR03586 79 HKELFERAKELGLTIF--SSPF-------------DETAVDFLESLDVPAYKIASFEITD-------LPLIRYVAKTGKP 136 (327)
T ss_pred HHHHHHHHHHhCCcEE--EccC-------------CHHHHHHHHHcCCCEEEECCccccC-------HHHHHHHHhcCCc
Confidence 4679999999999884 2222 2234577889999999986543221 2344445555666
Q ss_pred ceEee
Q 015338 238 IFYSL 242 (408)
Q Consensus 238 i~~s~ 242 (408)
|++|.
T Consensus 137 vilst 141 (327)
T TIGR03586 137 IIMST 141 (327)
T ss_pred EEEEC
Confidence 65553
No 172
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.90 E-value=94 Score=29.53 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
..+++.+|++|+++.+|+-.. ...++.+.++|||+|=.|+-
T Consensus 221 ~~~i~~~~~~G~~v~vwtvn~--------------~~~~~~~~~~Gvdgi~TD~P 261 (263)
T cd08567 221 KELVDEAHALGLKVVPWTVND--------------PEDMARLIDLGVDGIITDYP 261 (263)
T ss_pred HHHHHHHHHCCCEEEEecCCC--------------HHHHHHHHHcCCCEEEcCCC
Confidence 579999999999999997421 13567788999999988863
No 173
>PRK11059 regulatory protein CsrD; Provisional
Probab=28.87 E-value=85 Score=34.37 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCc----ccccHHHHHHHH
Q 015338 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEP----KKRYPPMRDALN 232 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~----~~~Y~~m~~AL~ 232 (408)
.+.++++.+++.|++++| ....+...+. ..+++..+||||+|......... ....+.+.+.+.
T Consensus 534 ~~~~~l~~L~~~G~~iai------ddfG~g~~s~-------~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~ 600 (640)
T PRK11059 534 RLRPVLRMLRGLGCRLAV------DQAGLTVVST-------SYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACA 600 (640)
T ss_pred HHHHHHHHHHHCCCEEEE------ECCCCCcccH-------HHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHH
Confidence 478888889999999887 1222222223 45678899999999764432211 112234455556
Q ss_pred hcCCCceEe
Q 015338 233 ETGCSIFYS 241 (408)
Q Consensus 233 ~~Gr~i~~s 241 (408)
..|-.++.+
T Consensus 601 ~~~i~viAe 609 (640)
T PRK11059 601 GTETQVFAT 609 (640)
T ss_pred HCCCeEEEE
Confidence 666666655
No 174
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=28.78 E-value=1e+02 Score=27.70 Aligned_cols=44 Identities=27% Similarity=0.417 Sum_probs=30.2
Q ss_pred cCCceEEEeCCCccCCCCCCCCCeee-cC-CCCCCCHHHHHHHHHHcCCeEEEEee
Q 015338 124 ELGYDHVNIDDCWSSPLRDLKGQLVP-DT-ITFPSGIKALADYVHGKGLKLGIYSD 177 (408)
Q Consensus 124 ~~G~~~~~iDDGW~~~~rd~~G~~~~-d~-~~FP~Glk~l~~~ih~~G~k~Glw~~ 177 (408)
+.|+..+++|-. |.+.. +. ..|| |+..+.++++++|++++|=+.
T Consensus 22 ~~~v~~vv~D~D---------gtl~~~~~~~~~p-gv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 22 KVGIKGVVLDKD---------NTLVYPDHNEAYP-ALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred HCCCCEEEEecC---------CccccCCCCCcCh-hHHHHHHHHHHcCCEEEEEeC
Confidence 357888888831 22222 12 2455 699999999999999998654
No 175
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=28.78 E-value=69 Score=32.06 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=38.1
Q ss_pred CCccchhhH--HhHHHHHHHcCCcEEEeecCCCCCCC--cccccHHHHHHHHhcCCCceEeeC
Q 015338 185 VRPGSLFHE--KDDAPLFASWGVDYLKYDNCFNLGIE--PKKRYPPMRDALNETGCSIFYSLC 243 (408)
Q Consensus 185 ~~Pgs~~~~--~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~Y~~m~~AL~~~Gr~i~~s~c 243 (408)
.+|+-.+=- +..+..+++||+|||-+--...++.. ....+..--+.|+.-.+.|+++ |
T Consensus 134 R~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE-~ 195 (360)
T KOG2672|consen 134 RNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVE-C 195 (360)
T ss_pred CCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchh-h
Confidence 345444322 35688899999999999887776542 2334444555666667788877 5
No 176
>PRK01060 endonuclease IV; Provisional
Probab=28.41 E-value=4.7e+02 Score=24.91 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEE-EEe-eCCc-cccCCC
Q 015338 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG-IYS-DAGV-FTCQVR 186 (408)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~G-lw~-~pg~-~~c~~~ 186 (408)
+.+.++.+ +++||+.|.|.-+-- . .+. .+..=|.-++.+-+.+++.|++++ +.. .|.. ..|...
T Consensus 14 ~~~~l~~~-----~~~G~d~vEl~~~~p---~----~~~-~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d 80 (281)
T PRK01060 14 LEGAVAEA-----AEIGANAFMIFTGNP---Q----QWK-RKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPN 80 (281)
T ss_pred HHHHHHHH-----HHcCCCEEEEECCCC---C----CCc-CCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCC
Confidence 66777777 778999998843211 0 011 000011237778888999999954 222 1211 112222
Q ss_pred c----cchhhHHhHHHHHHHcCCcEEEeecCCCCCCCc-ccccHHHHHHHHh-----cCCCceEeeC
Q 015338 187 P----GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEP-KKRYPPMRDALNE-----TGCSIFYSLC 243 (408)
Q Consensus 187 P----gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~-~~~Y~~m~~AL~~-----~Gr~i~~s~c 243 (408)
| .+.+++...++.-++.|+.+|.+=......... .+.+..+.++|++ .|-.+.++.+
T Consensus 81 ~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~ 147 (281)
T PRK01060 81 KEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENT 147 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 2 234566677777789999999983221111111 2355555555542 2444556554
No 177
>PRK12677 xylose isomerase; Provisional
Probab=28.19 E-value=4.4e+02 Score=27.28 Aligned_cols=106 Identities=18% Similarity=0.099 Sum_probs=55.6
Q ss_pred eEEechhhcCCC-CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCe
Q 015338 93 MGWNSWNFFACN-ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLK 171 (408)
Q Consensus 93 ~GwnSW~~~~~~-i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k 171 (408)
+||..+..|+.. -..-...+.++.+ +++||+.|.+.+.--. . +..+...-..-++.+.+.+++.||+
T Consensus 15 ~~~~~~~~~g~~~~~~~~~~E~v~~~-----a~~Gf~gVElh~~~l~----p---~~~~~~~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 15 VGWQGRDPFGDATRPPLDPVEAVHKL-----AELGAYGVTFHDDDLV----P---FGATDAERDRIIKRFKKALDETGLV 82 (384)
T ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHH-----HHhCCCEEEecccccC----C---CCCChhhhHHHHHHHHHHHHHcCCe
Confidence 456666556543 1111245566666 5667777776321000 0 0000000011278889999999999
Q ss_pred EEEEee-----CCc-cccCCC--cc----chhhHHhHHHHHHHcCCcEEEe
Q 015338 172 LGIYSD-----AGV-FTCQVR--PG----SLFHEKDDAPLFASWGVDYLKY 210 (408)
Q Consensus 172 ~Glw~~-----pg~-~~c~~~--Pg----s~~~~~~~~~~~~~wGvdylK~ 210 (408)
+..-.. |-. ..-.++ |. +.+++...++.-++.|.+.|-+
T Consensus 83 v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv 133 (384)
T PRK12677 83 VPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVM 133 (384)
T ss_pred eEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 875321 100 000122 22 3445666677778999998876
No 178
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=27.75 E-value=4e+02 Score=29.45 Aligned_cols=55 Identities=27% Similarity=0.333 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHH-cCCeEEEEee
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSD 177 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~-~G~k~Glw~~ 177 (408)
.+|.+.+.+.|+.+ .++|.+.|.|=| ..|-+.|. -+..|+..|++ .++.+++++-
T Consensus 150 ~~t~e~~~~~ak~l-----~~~Gad~I~IkD--------taG~l~P~------~v~~lv~alk~~~~ipi~~H~H 205 (596)
T PRK14042 150 VHTLDNFLELGKKL-----AEMGCDSIAIKD--------MAGLLTPT------VTVELYAGLKQATGLPVHLHSH 205 (596)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeCC--------cccCCCHH------HHHHHHHHHHhhcCCEEEEEeC
Confidence 58899999999988 567888888843 34666665 48999999985 4788888763
No 179
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=27.35 E-value=4.7e+02 Score=28.26 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc---CCeEEEEee
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK---GLKLGIYSD 177 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~---G~k~Glw~~ 177 (408)
.+|.+.+.+.|+.+ .++|.+.|+|=| -.|-+.|. -+..|+..|++. ++.+++++-
T Consensus 151 ~~t~e~~~~~a~~l-----~~~Gad~I~IkD--------taGll~P~------~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 151 IHTVEGFVEQAKRL-----LDMGADSICIKD--------MAALLKPQ------PAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeCC--------CccCCCHH------HHHHHHHHHHHhCCCCCeEEEEeC
Confidence 56899999999988 567888888843 34666665 489999999876 588888773
No 180
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=27.33 E-value=1e+02 Score=31.06 Aligned_cols=42 Identities=10% Similarity=-0.042 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
+.+++.+|+.|+++.+|+-... ..++.+.+||||.|=-|+..
T Consensus 235 ~~~v~~a~~~Gl~V~vWTVNd~--------------~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAANIHTNVYVINEP--------------WLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHhCCcCEEEeCCHH
Confidence 6789999999999999985432 35788899999999999764
No 181
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=27.20 E-value=5e+02 Score=27.73 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-CCeEEEEee
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSD 177 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~-G~k~Glw~~ 177 (408)
.++.+.+.+.|+.+ .++|.+.|.|=| -.|-..|. -+..|+..+++. ++.+++++-
T Consensus 149 ~~t~e~~~~~a~~l-----~~~Gad~I~i~D--------t~G~l~P~------~v~~Lv~~lk~~~~vpI~~H~H 204 (467)
T PRK14041 149 VHTLEYYLEFAREL-----VDMGVDSICIKD--------MAGLLTPK------RAYELVKALKKKFGVPVEVHSH 204 (467)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEECC--------ccCCcCHH------HHHHHHHHHHHhcCCceEEEec
Confidence 57889999999988 556888888743 34666555 488999998754 677887763
No 182
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=27.19 E-value=1.1e+02 Score=29.88 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++.+|++|+++..|+-.-. . ...++.+.++|||.|=.|+-
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n-----~-------~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNN-----D-------PENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccC-----C-------HHHHHHHHHcCCCEEEECCH
Confidence 4789999999999999974110 0 12567888999999988864
No 183
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=27.11 E-value=1.5e+02 Score=30.93 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecC-CCCCCCHHHHHHHHHHcCCeEEEEeeC
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDT-ITFPSGIKALADYVHGKGLKLGIYSDA 178 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~-~~FP~Glk~l~~~ih~~G~k~Glw~~p 178 (408)
-|.++.++-++.+.+ |- -|-..++|=.-|... | . .+|. +.-|.-.+.++++.+++|++++ ++|
T Consensus 66 R~~~El~~D~~~~~~--L~-pg~~~vnLH~~y~~~--d---~-~vdrd~~~p~hf~~w~~~Ak~~glglD--fNp 129 (414)
T TIGR01748 66 RTPSELRADLEKAMS--LI-PGKHRLNLHAIYLET--D---E-PVSRDEIKPEHFKNWVEWAKANGLGLD--FNP 129 (414)
T ss_pred CCHHHHHHHHHHHHH--hc-CCCCceeeecccccC--C---C-cccccccCcccHHHHHHHHHHcCCCcC--cCc
Confidence 355555665555544 12 255678887777421 1 1 1111 2345669999999999999999 666
No 184
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=27.00 E-value=1e+02 Score=31.29 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=60.2
Q ss_pred chhhcCCCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEE
Q 015338 97 SWNFFACNISETIIKETADALVS--TGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (408)
Q Consensus 97 SW~~~~~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Gl 174 (408)
+.+.+|.+ .++.+.+.|+++.+ ..|.++|+.+|+|||.-....-++ .-.-+.+.+=.-+.+..++.++
T Consensus 139 ~~~~~Y~~-~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~~---------~~~~~v~~~n~~~~g~~~~v~~ 208 (339)
T PRK09121 139 LYDDHYKS-REKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFFDE---------VNDWGVAALERAIEGLKCETAV 208 (339)
T ss_pred hccccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhhHH---------HHHHHHHHHHHHHcCCCCceEE
Confidence 33445543 36667777776655 256789999999998755411000 0001233333334555677777
Q ss_pred EeeCCccccCCCccc---------hhhHHhHHHHHHHcCCcEEEeecCC
Q 015338 175 YSDAGVFTCQVRPGS---------LFHEKDDAPLFASWGVDYLKYDNCF 214 (408)
Q Consensus 175 w~~pg~~~c~~~Pgs---------~~~~~~~~~~~~~wGvdylK~D~~~ 214 (408)
+++.|... .+++ .+-++..+..+.+..||.+=+++-.
T Consensus 209 HvC~G~~~---~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~ 254 (339)
T PRK09121 209 HICYGYGI---KANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECHN 254 (339)
T ss_pred EEeCCCCC---CCccccccccccccccHHHHHHHHHhCCCCEEEEEecC
Confidence 66655321 0111 0233455777888999999999853
No 185
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.64 E-value=6.8e+02 Score=25.32 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccCCceEEEe--CCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHH--HcCCeEEEEee
Q 015338 102 ACNISETIIKETADALVSTGLAELGYDHVNI--DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVH--GKGLKLGIYSD 177 (408)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~i--DDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih--~~G~k~Glw~~ 177 (408)
...++.+.+++.++.| .++|+++|-+ -+|+... .....+..+|+ . ..++.++ .++.|+..+..
T Consensus 19 ~~~f~~~~~~~i~~~L-----~~aGv~~IEvg~~~g~g~~------s~~~g~~~~~~-~-e~i~~~~~~~~~~~~~~ll~ 85 (337)
T PRK08195 19 RHQYTLEQVRAIARAL-----DAAGVPVIEVTHGDGLGGS------SFNYGFGAHTD-E-EYIEAAAEVVKQAKIAALLL 85 (337)
T ss_pred CCccCHHHHHHHHHHH-----HHcCCCEEEeecCCCCCCc------cccCCCCCCCH-H-HHHHHHHHhCCCCEEEEEec
Confidence 4568899999999999 5678888876 3344331 12223334443 2 2334442 24577877776
Q ss_pred CCccccCCCccchhhHHhHHHHHHHcCCcEEEee-cCCCCCCCcccccHHHHHHHHhcCCCceEeeCCCCCCCh
Q 015338 178 AGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYD-NCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDP 250 (408)
Q Consensus 178 pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D-~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s~c~~g~~~p 250 (408)
|+..+ + .+++...+.|+|.|.+= +|... +.-....+.+++.|-.+.+.++..+..+|
T Consensus 86 pg~~~----------~-~dl~~a~~~gvd~iri~~~~~e~-----~~~~~~i~~ak~~G~~v~~~l~~a~~~~~ 143 (337)
T PRK08195 86 PGIGT----------V-DDLKMAYDAGVRVVRVATHCTEA-----DVSEQHIGLARELGMDTVGFLMMSHMAPP 143 (337)
T ss_pred cCccc----------H-HHHHHHHHcCCCEEEEEEecchH-----HHHHHHHHHHHHCCCeEEEEEEeccCCCH
Confidence 65421 1 34666778899988753 33321 11223334445567666666665444444
No 186
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=26.30 E-value=1.4e+02 Score=30.19 Aligned_cols=129 Identities=18% Similarity=0.282 Sum_probs=71.2
Q ss_pred hhhHHhHHHHHHHcCCc-EEEeecCCCCCCCc------ccccHHHHHHHHhcCCCceEeeCCCCCCCh---hhhhhhc--
Q 015338 190 LFHEKDDAPLFASWGVD-YLKYDNCFNLGIEP------KKRYPPMRDALNETGCSIFYSLCEWGVDDP---ALWAGKV-- 257 (408)
Q Consensus 190 ~~~~~~~~~~~~~wGvd-ylK~D~~~~~~~~~------~~~Y~~m~~AL~~~Gr~i~~s~c~~g~~~p---~~w~~~~-- 257 (408)
++|=...-.++.+|-.+ .||.=.-|+++.++ .+.-..+.+|+.++|+.+++++=. |...| ......+
T Consensus 124 fE~G~digs~L~~WP~ehvVKcLvfyHPdD~~~lr~~Qe~~l~~l~~ac~~sg~ElLLEvI~-p~~~~~~~~~~~~ai~r 202 (311)
T PF09863_consen 124 FEHGRDIGSQLIEWPQEHVVKCLVFYHPDDDPELRLEQEAQLRRLYDACRRSGHELLLEVIP-PKDMPVDDDTYARAIER 202 (311)
T ss_pred eecCcCHHHHHHhCCcccEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhcCcceeEEEec-CCCCCCChHHHHHHHHH
Confidence 34434566779999987 99987777765432 344557788899999999999732 22222 1111100
Q ss_pred -------cceeeecCCCCCChHHHHHHHHhhcccccccCCCCcCCCCccccCCCCCChhhhHHHHHHHHHhcCceeeecC
Q 015338 258 -------GNSWRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCD 330 (408)
Q Consensus 258 -------~n~wRis~Di~~~W~~~~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwai~gsPL~ig~D 330 (408)
-+-|-+..=....|..+...+.. +||.+--+=--|++..+....-++-+..++|+.-|-=
T Consensus 203 ~Y~lGI~PDWWKLep~s~~~W~~i~~~I~~-------------~Dp~crGvVvLGLdAP~e~L~~~F~~Aa~~p~vkGFA 269 (311)
T PF09863_consen 203 FYNLGIKPDWWKLEPLSAAAWQAIEALIEE-------------RDPYCRGVVVLGLDAPEEELAAGFAAAAGSPLVKGFA 269 (311)
T ss_pred HHHcCCCCCeeccCCCCHHHHHHHHHHHHH-------------hCCCceeEEEecCCCCHHHHHHHHHHhhCCCceeeee
Confidence 12222211111233333333322 4666521101245555555556777788889998876
Q ss_pred CC
Q 015338 331 VR 332 (408)
Q Consensus 331 l~ 332 (408)
+.
T Consensus 270 VG 271 (311)
T PF09863_consen 270 VG 271 (311)
T ss_pred ec
Confidence 64
No 187
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=26.22 E-value=4.1e+02 Score=25.85 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCC-eEEEEeeCCcc
Q 015338 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL-KLGIYSDAGVF 181 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~-k~Glw~~pg~~ 181 (408)
..++.+.+.+.++.+ ++.|++.|.+= . |.+...+ .+..+++++++.|+ ++.|.+.. .
T Consensus 38 ~~ls~eei~~~i~~~-----~~~gi~~I~~t----G------GEPll~~-----~l~~iv~~l~~~g~~~v~i~TNG-~- 95 (302)
T TIGR02668 38 NELSPEEIERIVRVA-----SEFGVRKVKIT----G------GEPLLRK-----DLIEIIRRIKDYGIKDVSMTTNG-I- 95 (302)
T ss_pred CcCCHHHHHHHHHHH-----HHcCCCEEEEE----C------ccccccc-----CHHHHHHHHHhCCCceEEEEcCc-h-
Confidence 357888999988887 45577777661 1 3444443 37889999999988 77764432 1
Q ss_pred ccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 182 ~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
.+...++.+++.|++.|.+..
T Consensus 96 ----------ll~~~~~~l~~~g~~~v~iSl 116 (302)
T TIGR02668 96 ----------LLEKLAKKLKEAGLDRVNVSL 116 (302)
T ss_pred ----------HHHHHHHHHHHCCCCEEEEEe
Confidence 124466778889999777554
No 188
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=26.18 E-value=2.3e+02 Score=25.89 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred CccCCceEEEeCCCccCCCCCCCCCe---eecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHH
Q 015338 122 LAELGYDHVNIDDCWSSPLRDLKGQL---VPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAP 198 (408)
Q Consensus 122 l~~~G~~~~~iDDGW~~~~rd~~G~~---~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~ 198 (408)
++..|+++++| +-..|.- ..|+ -+..-.+..++.||++|.|. ...+.+...+.+-.+..++
T Consensus 18 ~k~~g~~fvii--------KateG~~g~~~~D~-----~~~~~~~~A~~aGl~~G~YH---f~~~~~~~~a~~qA~~f~~ 81 (191)
T cd06414 18 VKASGVDFAII--------RAGYGGYGELQEDK-----YFEENIKGAKAAGIPVGVYF---YSYAVTVAEAREEAEFVLR 81 (191)
T ss_pred HHhCCCCEEEE--------EEecCCCcccccCH-----HHHHHHHHHHHCCCceEEEE---EEEeCCHHHHHHHHHHHHH
Q ss_pred HHHHcCCcE-EEeecCCCCCCC-------cccccHHHHHHHHhcCCCceE
Q 015338 199 LFASWGVDY-LKYDNCFNLGIE-------PKKRYPPMRDALNETGCSIFY 240 (408)
Q Consensus 199 ~~~~wGvdy-lK~D~~~~~~~~-------~~~~Y~~m~~AL~~~Gr~i~~ 240 (408)
.+...+.++ +-+|.-...... ..+....+.+++++.|.+.++
T Consensus 82 ~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~G~~~~i 131 (191)
T cd06414 82 LIKGYKLSYPVYYDLEDETQLGAGLSKDQRTDIANAFCETIEAAGYYPGI 131 (191)
T ss_pred HhhccCCCCCeEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEE
No 189
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=26.16 E-value=2e+02 Score=35.73 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCC----CCC--CCHHHHHHHHHHcCCeEEEE
Q 015338 102 ACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTI----TFP--SGIKALADYVHGKGLKLGIY 175 (408)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~----~FP--~Glk~l~~~ih~~G~k~Glw 175 (408)
....+-+.+.+.++.+ +++|++.|.|=--+........|....|.. .|. .+++.|++.+|++||++=|=
T Consensus 752 ~~~~tf~~~~~~l~Yl-----~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 752 HKDFTFADAEAILPYL-----AALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCCCHHHHHHHhHHH-----HHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3467889999999999 789999998866665322222344443322 232 26999999999999998775
Q ss_pred eeC
Q 015338 176 SDA 178 (408)
Q Consensus 176 ~~p 178 (408)
+-|
T Consensus 827 iV~ 829 (1693)
T PRK14507 827 IVP 829 (1693)
T ss_pred ecc
Confidence 544
No 190
>PRK13561 putative diguanylate cyclase; Provisional
Probab=26.13 E-value=86 Score=34.17 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCC
Q 015338 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL 216 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~ 216 (408)
....+.+.++++|++++| ....+...+..|+ ..+++.++||||+|.....
T Consensus 535 ~~~~~~~~l~~~G~~i~l------ddfG~g~ssl~~L----~~l~~l~~d~lKiD~s~i~ 584 (651)
T PRK13561 535 AAVAILRPLRNAGVRVAL------DDFGMGYAGLRQL----QHMKSLPIDVLKIDKMFVD 584 (651)
T ss_pred HHHHHHHHHHHCCCEEEE------ECCCCCcccHHHH----hhcCCCCCcEEEECHHHHh
Confidence 356778888899998887 1112222233333 3345689999999976543
No 191
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.86 E-value=4.9e+02 Score=24.89 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-CCeEEEEeeCCccccCCC
Q 015338 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSDAGVFTCQVR 186 (408)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~-G~k~Glw~~pg~~~c~~~ 186 (408)
..+.+..+.+ +++||+++.|.-+.... ..... .=+..++.+.+.+.+. |+.+.+...-...-+...
T Consensus 10 ~~l~~~l~~a-----~~~G~d~vEl~~~~~~~------~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 76 (279)
T cd00019 10 FGLENALKRA-----KEIGFDTVAMFLGNPRS------WLSRP--LKKERAEKFKAIAEEGPSICLSVHAPYLINLASPD 76 (279)
T ss_pred ccHHHHHHHH-----HHcCCCEEEEEcCCCCc------cCCCC--CCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCC
Confidence 4456667777 67899898775333210 00000 0023588899999888 888765321100111111
Q ss_pred c----cchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHH-------HhcCCCceEeeCCCC
Q 015338 187 P----GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDAL-------NETGCSIFYSLCEWG 246 (408)
Q Consensus 187 P----gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL-------~~~Gr~i~~s~c~~g 246 (408)
| .+.++++..++..++.|++++-+-.-........+.+..+.+.+ ++.|-.+.++.+.+.
T Consensus 77 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~ 147 (279)
T cd00019 77 KEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 2 23445567778888999999977433222222233343333333 334555666655443
No 192
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=25.80 E-value=1.1e+02 Score=30.87 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
+.+++.+|+.|+++..|+--.. ..++.+.++|||.|=-|+.
T Consensus 235 ~~~v~~~~~~G~~v~vWTVNd~--------------~~~~~l~~~GVDgIiTD~P 275 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVNEP--------------WLFSLLWCSGVSSVTTNAC 275 (315)
T ss_pred HHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHhcCCCEEEcCCH
Confidence 6799999999999999986422 3588899999999998874
No 193
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.50 E-value=3.7e+02 Score=25.33 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEe
Q 015338 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~ 210 (408)
-+...++++++.|+++-+.++.-. .| +-..+++...++.+.+.|++.|-+
T Consensus 116 ~~~~~i~~a~~~G~~v~~~~~~~~-~~---~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 116 NAEEAIEAAKEAGLEVEGSLEDAF-GC---KTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeec-CC---CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 378889999999999988775422 23 345778888999999999999885
No 194
>PLN02455 fructose-bisphosphate aldolase
Probab=25.28 E-value=1.2e+02 Score=31.02 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccch-----hhHHhHHHHHHHcCCcEEEeecCCC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSL-----FHEKDDAPLFASWGVDYLKYDNCFN 215 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~-----~~~~~~~~~~~~wGvdylK~D~~~~ 215 (408)
++++++++++|+-+||=++-|.....+.+|.. +=+....+.+.+-|++|=||-....
T Consensus 87 ~p~~~~L~~~GIvPGIKVDkGl~~l~g~~ge~~t~GLDgL~~R~~~y~~~GarFAKWRsVik 148 (358)
T PLN02455 87 KPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQGLDGLGARCAKYYEAGARFAKWRAVLK 148 (358)
T ss_pred cCHHHHHHHCCCeeeEEecCCccccCCCCCCccCcchHHHHHHHHHHHhcCCceeeceeeee
Confidence 56899999999999999998764443334422 2223334445556999999987543
No 195
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.19 E-value=5.3e+02 Score=24.70 Aligned_cols=106 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred CCCceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc
Q 015338 89 STPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK 168 (408)
Q Consensus 89 ~~pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~ 168 (408)
++-|+|-++| .+..+.+-++..+.+..+ ||+.|-| ..+......-.....|.-++.+.+.+.+.
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~e~l~~~~~~--------G~~~VEl-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (279)
T TIGR00542 1 KKHPLGIYEK-ALPKGECWLERLQLAKTC--------GFDFVEM-------SVDETDDRLSRLDWSREQRLALVNAIIET 64 (279)
T ss_pred CCcccceehh-hCCCCCCHHHHHHHHHHc--------CCCEEEE-------ecCCccchhhccCCCHHHHHHHHHHHHHc
Q ss_pred CCeE-EEEeeCCccccCCCcc------chhhHHhHHHHHHHcCCcEEEe
Q 015338 169 GLKL-GIYSDAGVFTCQVRPG------SLFHEKDDAPLFASWGVDYLKY 210 (408)
Q Consensus 169 G~k~-Glw~~pg~~~c~~~Pg------s~~~~~~~~~~~~~wGvdylK~ 210 (408)
|+++ ++...+........|. ..++++..++..+++|..+|-+
T Consensus 65 gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (279)
T TIGR00542 65 GVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQL 113 (279)
T ss_pred CCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEe
No 196
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=25.11 E-value=92 Score=31.06 Aligned_cols=90 Identities=21% Similarity=0.195 Sum_probs=52.7
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~ 202 (408)
.++|.+.|+++|.|.....- +.-....=-.|. ++.+++.+|++ .+.|++ |.. .......+.+
T Consensus 190 ~~aGad~I~i~d~~a~~~~l--sp~~f~ef~~p~-~~~i~~~i~~~--~~ilH~------cG~-------~~~~l~~~~~ 251 (339)
T PRK06252 190 LEAGADVICIADPSASPELL--GPKMFEEFVLPY-LNKIIDEVKGL--PTILHI------CGD-------LTSILEEMAD 251 (339)
T ss_pred HHcCCCEEEeCCCCcccccc--CHHHHHHHHHHH-HHHHHHHhccC--CcEEEE------CCC-------chHHHHHHHh
Confidence 56799999999999652100 000001111233 78899999886 455544 421 1235677888
Q ss_pred cCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCCceEe
Q 015338 203 WGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (408)
Q Consensus 203 wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~i~~s 241 (408)
.|+|-+-+|+.. .+.++.+..|..+.+.
T Consensus 252 ~g~d~~~~d~~~-----------dl~~~~~~~g~~~~i~ 279 (339)
T PRK06252 252 CGFDGISIDEKV-----------DVKTAKENVGDRAALI 279 (339)
T ss_pred cCCCeeccCCCC-----------CHHHHHHHhCCCeEEE
Confidence 999988877652 2345555566655443
No 197
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=25.01 E-value=54 Score=34.29 Aligned_cols=55 Identities=29% Similarity=0.352 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEE
Q 015338 109 IIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (408)
Q Consensus 109 ~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Gl 174 (408)
.+....++| |.+|++=|.+|-=|-.-++...+.... +|-+.|++.|++.|||+=.
T Consensus 17 ~~~~~L~~L-----K~~GV~GVmvdvWWGiVE~~~p~~ydW------s~Y~~l~~~vr~~GLk~~~ 71 (402)
T PF01373_consen 17 ALEAQLRAL-----KSAGVDGVMVDVWWGIVEGEGPQQYDW------SGYRELFEMVRDAGLKLQV 71 (402)
T ss_dssp HHHHHHHHH-----HHTTEEEEEEEEEHHHHTGSSTTB---------HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHH-----HHcCCcEEEEEeEeeeeccCCCCccCc------HHHHHHHHHHHHcCCeEEE
Confidence 677777777 788999999985443323322222211 3789999999999999753
No 198
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=24.89 E-value=43 Score=33.16 Aligned_cols=144 Identities=10% Similarity=0.145 Sum_probs=69.1
Q ss_pred ceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEe-----CCCccCCCCCCCCCee-------------ecCCC
Q 015338 92 QMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNI-----DDCWSSPLRDLKGQLV-------------PDTIT 153 (408)
Q Consensus 92 P~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~i-----DDGW~~~~rd~~G~~~-------------~d~~~ 153 (408)
|+| .|.++.-...+.++++..++..+++| +..|++ .++.... +.+|... +|+.=
T Consensus 15 ~lg-dT~W~~~~~~~~~e~~~yL~~r~~qg-----FN~iq~~~l~~~~~~~~~--n~~~~~~~~~~~~~~~d~~~~N~~Y 86 (289)
T PF13204_consen 15 WLG-DTAWSLFHRLTREEWEQYLDTRKEQG-----FNVIQMNVLPQWDGYNTP--NRYGFAPFPDEDPGQFDFTRPNPAY 86 (289)
T ss_dssp EEE-EE-TTHHHH--HHHHHHHHHHHHHTT-------EEEEES-SSSS-B------TTS-BS-SSTT------TT----H
T ss_pred ehh-HHHHHHhhCCCHHHHHHHHHHHHHCC-----CCEEEEEeCCCccccccc--ccCCCcCCCCCCccccCCCCCCHHH
Confidence 556 45555556788888999899885544 444443 2233211 1122211 33333
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeeC------Cccc----cCCCccchhhHHhHHHHHHHc-CCcEEE-eecCCCCCCCcc
Q 015338 154 FPSGIKALADYVHGKGLKLGIYSDA------GVFT----CQVRPGSLFHEKDDAPLFASW-GVDYLK-YDNCFNLGIEPK 221 (408)
Q Consensus 154 FP~Glk~l~~~ih~~G~k~Glw~~p------g~~~----c~~~Pgs~~~~~~~~~~~~~w-GvdylK-~D~~~~~~~~~~ 221 (408)
|=+ +..+++++.++||.+.|=..- +... -++.-....|.+-.++.|++. .|=++= -|. .......
T Consensus 87 F~~-~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~--~~~~~~~ 163 (289)
T PF13204_consen 87 FDH-LDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY--FDTEKTR 163 (289)
T ss_dssp HHH-HHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS----TTSSH
T ss_pred HHH-HHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc--CCCCcCH
Confidence 333 889999999999999853211 1100 011112456777778888876 443331 222 1223456
Q ss_pred cccHHHHHHHHhcCCCceEeeCCCC
Q 015338 222 KRYPPMRDALNETGCSIFYSLCEWG 246 (408)
Q Consensus 222 ~~Y~~m~~AL~~~Gr~i~~s~c~~g 246 (408)
+.+.+|.+.|++..+.-+.++++.+
T Consensus 164 ~~w~~~~~~i~~~dp~~L~T~H~~~ 188 (289)
T PF13204_consen 164 ADWDAMARGIKENDPYQLITIHPCG 188 (289)
T ss_dssp HHHHHHHHHHHHH--SS-EEEEE-B
T ss_pred HHHHHHHHHHHhhCCCCcEEEeCCC
Confidence 7788888888766542266666544
No 199
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=24.81 E-value=1.2e+02 Score=29.23 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHH-cCCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS-WGVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~-wGvdylK~D~ 212 (408)
+.+++.+|+.|+++.+|+--.. ..++.+.+ +||| |=-|+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~--------------~~~~~l~~~~GVd-iiTD~ 257 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTP--------------TEKQYFAKTLNVP-YITDS 257 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCH--------------HHHHHHHHHhCCC-eecCC
Confidence 5789999999999999985422 25778888 9999 76664
No 200
>PLN02389 biotin synthase
Probab=24.30 E-value=3.5e+02 Score=27.96 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c 183 (408)
.++.+.|++.|+.+ ++.|+..|+|=..|-. ..|. +..|+. +..+++.+++.|+.+ ....|
T Consensus 115 ~Ls~EeIl~~a~~~-----~~~G~~~~~ivts~rg----~~~e----~~~~e~-i~eiir~ik~~~l~i--~~s~G---- 174 (379)
T PLN02389 115 LMSKDDVLEAAKRA-----KEAGSTRFCMGAAWRD----TVGR----KTNFNQ-ILEYVKEIRGMGMEV--CCTLG---- 174 (379)
T ss_pred cCCHHHHHHHHHHH-----HHcCCCEEEEEecccC----CCCC----hhHHHH-HHHHHHHHhcCCcEE--EECCC----
Confidence 37899999999988 4457777777333421 1111 112333 777788888766543 22222
Q ss_pred CCCccchhhH-HhHHHHHHHcCCcEEEeecC
Q 015338 184 QVRPGSLFHE-KDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 184 ~~~Pgs~~~~-~~~~~~~~~wGvdylK~D~~ 213 (408)
.. +..++.+++.|+|.+-++.-
T Consensus 175 --------~l~~E~l~~LkeAGld~~~~~Le 197 (379)
T PLN02389 175 --------MLEKEQAAQLKEAGLTAYNHNLD 197 (379)
T ss_pred --------CCCHHHHHHHHHcCCCEEEeeec
Confidence 22 45788899999998877554
No 201
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.16 E-value=2e+02 Score=29.56 Aligned_cols=58 Identities=12% Similarity=-0.073 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCeEEEEee---------CCc-cccCCCc--cchhhHHhHHHHHHHcCCcEEEeecCCC
Q 015338 158 IKALADYVHGKGLKLGIYSD---------AGV-FTCQVRP--GSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~---------pg~-~~c~~~P--gs~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (408)
.+.+++.+|+.||++-.|+- ||. ..+...+ +..+........+.+.|||.|=-||-..
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~~ 349 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLDVLARDVGILGIFSDWPAT 349 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccHHHHHHHHHHhcCCCEEEccCCCc
Confidence 46899999999999999985 321 1121111 1112223333344599999999998643
No 202
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=23.98 E-value=1e+02 Score=28.28 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCc
Q 015338 157 GIKALADYVHGKGLKLGIYSDAGV 180 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~pg~ 180 (408)
-++.+++.+++.|.++|||+.+..
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~~ 134 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQYD 134 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcch
Confidence 378889999999999999998753
No 203
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=23.54 E-value=1.5e+02 Score=29.30 Aligned_cols=49 Identities=22% Similarity=0.106 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHc-CCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASW-GVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~w-GvdylK~D~ 212 (408)
..+++.+|+.|+++..|+--.. |...+ +.+ ..+++.+.++ |||.|=-|+
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~~--~~~~~--~~~-~~~~~~l~~~~GVdgIiTD~ 295 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRNE--NLFLA--PDF-KQDMDALYNAAGVDGVFTDF 295 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecCc--ccccc--ccc-ccCHHHHHHHhCCCEEEcCC
Confidence 5799999999999999986531 11100 111 3456777888 999997775
No 204
>PRK06256 biotin synthase; Validated
Probab=23.20 E-value=2e+02 Score=28.66 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c 183 (408)
..+.+.|++.++.+. +.|+..++|-.++... +...++ -+..+++.|++. ..+-+....|.
T Consensus 90 ~~s~eeI~~~~~~~~-----~~g~~~~~l~~~g~~p----------~~~~~~-~~~e~i~~i~~~-~~i~~~~~~g~--- 149 (336)
T PRK06256 90 WLDIEELIEAAKEAI-----EEGAGTFCIVASGRGP----------SGKEVD-QVVEAVKAIKEE-TDLEICACLGL--- 149 (336)
T ss_pred CCCHHHHHHHHHHHH-----HCCCCEEEEEecCCCC----------CchHHH-HHHHHHHHHHhc-CCCcEEecCCc---
Confidence 368899999999884 4566556554444321 101112 266777778765 33333322221
Q ss_pred CCCccchhhHHhHHHHHHHcCCcEEEe
Q 015338 184 QVRPGSLFHEKDDAPLFASWGVDYLKY 210 (408)
Q Consensus 184 ~~~Pgs~~~~~~~~~~~~~wGvdylK~ 210 (408)
--...++.+++.|++.+-+
T Consensus 150 --------l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 150 --------LTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred --------CCHHHHHHHHHhCCCEEec
Confidence 1134567788888887755
No 205
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=23.14 E-value=4.8e+02 Score=25.68 Aligned_cols=79 Identities=13% Similarity=0.253 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCC-CCcccccHHHHHHHHhcCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLG-IEPKKRYPPMRDALNETGC 236 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~-~~~~~~Y~~m~~AL~~~Gr 236 (408)
++.++++.+++|+++-++.+- ..|+. .-..+++.+.++.+.+.|++.|-+ |...+ ..|.+-|..+ +++++.-.
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~d--~~~~~-r~~~~~~~~~~~~~~~~G~~~i~l--~DT~G~~~P~~v~~l~-~~l~~~~~ 190 (280)
T cd07945 117 IREVIEYAIKNGIEVNIYLED--WSNGM-RDSPDYVFQLVDFLSDLPIKRIML--PDTLGILSPFETYTYI-SDMVKRYP 190 (280)
T ss_pred HHHHHHHHHhCCCEEEEEEEe--CCCCC-cCCHHHHHHHHHHHHHcCCCEEEe--cCCCCCCCHHHHHHHH-HHHHhhCC
Confidence 678899999999998887764 23532 124578888999999999997543 33333 2344444333 34433222
Q ss_pred CceEee
Q 015338 237 SIFYSL 242 (408)
Q Consensus 237 ~i~~s~ 242 (408)
.+-+++
T Consensus 191 ~~~i~~ 196 (280)
T cd07945 191 NLHFDF 196 (280)
T ss_pred CCeEEE
Confidence 344554
No 206
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=23.04 E-value=1.2e+02 Score=29.26 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=25.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc
Q 015338 150 DTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (408)
Q Consensus 150 d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~ 180 (408)
..+.-|+ +..++++||+.|+|.||=+.|++
T Consensus 91 H~E~~~~-~~r~i~~Ik~~G~kaGv~lnP~T 120 (220)
T COG0036 91 HAEATEH-IHRTIQLIKELGVKAGLVLNPAT 120 (220)
T ss_pred EeccCcC-HHHHHHHHHHcCCeEEEEECCCC
Confidence 3344444 89999999999999999999986
No 207
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=22.62 E-value=6e+02 Score=23.25 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=55.0
Q ss_pred ccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHH
Q 015338 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (408)
Q Consensus 123 ~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~ 202 (408)
+..|+++++|=.+. |.-..|+ -+..-++..++.||++|.|.=+-. |.+-+.+.+--+-.++.++.
T Consensus 18 ~~~g~~fviiKate--------G~~~~d~-----~~~~n~~~A~~aGl~vG~Yhf~~~--~~~~~~a~~eA~~f~~~~~~ 82 (196)
T cd06415 18 GQAGAKFAIVKISE--------GTNYVNP-----KASAQVSSAIANGKMTGGYHFARF--GGSVSQAKYEADYFLNSAQQ 82 (196)
T ss_pred HhCCCcEEEEEEcC--------CCccCCc-----cHHHHHHHHHHCCCeeEEEEEEec--CCCHHHHHHHHHHHHHHhhh
Confidence 56788888885433 2223453 267778888999999999984311 11111122211223444555
Q ss_pred cCC---cEEEeecCCCCCCCc---ccccHHHHHHHHhcCC-CceEe
Q 015338 203 WGV---DYLKYDNCFNLGIEP---KKRYPPMRDALNETGC-SIFYS 241 (408)
Q Consensus 203 wGv---dylK~D~~~~~~~~~---~~~Y~~m~~AL~~~Gr-~i~~s 241 (408)
.|+ .++=+|.-....... ......+.+.+++.|. +++++
T Consensus 83 ~~l~~~~~~~lDvE~~~~~~~~~~~~~~~~f~~~v~~~G~~~~iYt 128 (196)
T cd06415 83 AGLPKGSYLALDYEQGSGNSKAANTSAILAFMDTIKDAGYKPMLYS 128 (196)
T ss_pred cCCCCCCEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 554 245566643322111 1223456667777775 55554
No 208
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=22.56 E-value=91 Score=28.70 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHcCCccCCc--e-EEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCC-eEEEEeeCC
Q 015338 105 ISETIIKETADALVSTGLAELGY--D-HVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL-KLGIYSDAG 179 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~--~-~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~-k~Glw~~pg 179 (408)
.+.+.-.+.|+.+.+. ++..|+ . .++|| ++... + .......++.+++.|+++|- ++|||..+.
T Consensus 67 ~~~~~a~~eA~~f~~~-~~~~~~~~~~~~~lD--~E~~~----~-----~~~~~~~~~~F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 67 TSAADAQAEARYFANT-AKSLGLSKNTVMVAD--MEDSS----S-----SGNATANVNAFWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred CChHHHHHHHHHHHHH-HHHcCCCCCCceEEE--eecCC----C-----cchHHHHHHHHHHHHHHcCCCCcEEEccHH
Confidence 4566666777765442 222332 2 35677 43311 0 11122347899999999998 899998763
No 209
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=22.46 E-value=4.7e+02 Score=26.69 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeee-cCCCCCC---------CHHHHHHHHHHcCCeEE----
Q 015338 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVP-DTITFPS---------GIKALADYVHGKGLKLG---- 173 (408)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~-d~~~FP~---------Glk~l~~~ih~~G~k~G---- 173 (408)
..+-+....+ ++.|...|+|| -.|++|.++. ..+-||. .|+++++.++++|+-.-
T Consensus 77 k~~de~fk~i-----kdn~~Na~ViD------~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiV 145 (400)
T COG1306 77 KRLDELFKLI-----KDNNINAFVID------VKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARIV 145 (400)
T ss_pred hHHHHHHHHH-----HhCCCCEEEEE------ecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEEE
Confidence 3444445555 66778899998 4567777753 2223332 38999999999875321
Q ss_pred ------E-EeeCCcccc--------------------------CCCccchhhHHhHHHHHHHcCCcEEEeecCCCC
Q 015338 174 ------I-YSDAGVFTC--------------------------QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL 216 (408)
Q Consensus 174 ------l-w~~pg~~~c--------------------------~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~ 216 (408)
| +.+|+.... .-.|...+|=-..++-.++.|||=|.+|+...+
T Consensus 146 vFKD~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYIRFP 221 (400)
T COG1306 146 VFKDTILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYIRFP 221 (400)
T ss_pred EeeeeeEEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHcCccceeeeEEEcc
Confidence 0 011211000 112333444456677788999999999997544
No 210
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=22.43 E-value=4.9e+02 Score=24.67 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEE--------eeCCcc
Q 015338 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIY--------SDAGVF 181 (408)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw--------~~pg~~ 181 (408)
+.+.++.+ +++||+.|-| |........-++... +++.|.+.+++.|+++-.+ ......
T Consensus 15 l~~~l~~~-----~~~G~~~vEl---~~~~~~~~~~~~~~~------~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~ 80 (275)
T PRK09856 15 IEHAFRDA-----SELGYDGIEI---WGGRPHAFAPDLKAG------GIKQIKALAQTYQMPIIGYTPETNGYPYNMMLG 80 (275)
T ss_pred HHHHHHHH-----HHcCCCEEEE---ccCCccccccccCch------HHHHHHHHHHHcCCeEEEecCcccCcCccccCC
Q ss_pred ccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCC-CCCcccccHHHHHHHHh
Q 015338 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL-GIEPKKRYPPMRDALNE 233 (408)
Q Consensus 182 ~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~-~~~~~~~Y~~m~~AL~~ 233 (408)
.-..+..+.++++..++.-+.+|.+.|-+=.+..+ .....+.+..+.+.|+.
T Consensus 81 ~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (275)
T PRK09856 81 DEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSE 133 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHH
No 211
>PLN02425 probable fructose-bisphosphate aldolase
Probab=22.30 E-value=1.6e+02 Score=30.63 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCcc-----chhhHHhHHHHHHHcCCcEEEeecCCCC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPG-----SLFHEKDDAPLFASWGVDYLKYDNCFNL 216 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pg-----s~~~~~~~~~~~~~wGvdylK~D~~~~~ 216 (408)
++++++++++|+-+||=++-|.....+.++ -++=+....+.+.+-|+.|=||-....-
T Consensus 122 ~p~~d~L~~~GIVPGIKVDkGl~~l~G~~~e~~t~GLDgL~~R~~~y~~~GarFAKWRsViki 184 (390)
T PLN02425 122 KKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFAKWRTVVSI 184 (390)
T ss_pred cCHHHHHHHCCceeeEEecCCCCcCCCCCCCccCCChHHHHHHHHHHHHcCCceeehheeecc
Confidence 779999999999999999877543322221 0222333344455569999999876443
No 212
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=22.26 E-value=5.3e+02 Score=24.89 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeC---CccccC-CCcc-chhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHH
Q 015338 158 IKALADYVHGKGLKLGIYSDA---GVFTCQ-VRPG-SLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALN 232 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~p---g~~~c~-~~Pg-s~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~ 232 (408)
+..=+..++++|+|+-|=+-- +...+. ..+. ...|+....+.+.++|+|.|-+|+-+... .+.|..+.++|+
T Consensus 61 ~~~~i~~~~~~g~KVllSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr 137 (256)
T cd06546 61 LWTELAILQSSGVKVMGMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLR 137 (256)
T ss_pred HHHHHHHHHhCCCEEEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHH
Confidence 444456788999998763321 111111 1111 23456677778889999999999987532 245777777776
Q ss_pred hc-CCCceEee
Q 015338 233 ET-GCSIFYSL 242 (408)
Q Consensus 233 ~~-Gr~i~~s~ 242 (408)
+. +++.++++
T Consensus 138 ~~~~~~~~lT~ 148 (256)
T cd06546 138 SDFGPDFIITL 148 (256)
T ss_pred HHhCCCcEEEE
Confidence 43 55666664
No 213
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=22.23 E-value=93 Score=30.79 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcC--CeEEEEeeCCc------cccCCCccc-hhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccH---
Q 015338 158 IKALADYVHGKG--LKLGIYSDAGV------FTCQVRPGS-LFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYP--- 225 (408)
Q Consensus 158 lk~l~~~ih~~G--~k~Glw~~pg~------~~c~~~Pgs-~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~--- 225 (408)
+..+.+.+|++. +|+-|-+.-.. ......|.. ..+++..++.++++|+|.|-+|+-+.......+.|.
T Consensus 53 ~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll 132 (299)
T cd02879 53 FSTFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLL 132 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHH
Confidence 556666666544 66554332211 111334443 456688899999999999999998764322234444
Q ss_pred -HHHHHHHh----cC-CCceEeeC
Q 015338 226 -PMRDALNE----TG-CSIFYSLC 243 (408)
Q Consensus 226 -~m~~AL~~----~G-r~i~~s~c 243 (408)
.++++|.+ +| ..+++++.
T Consensus 133 ~elr~~l~~~~~~~~~~~~~ls~a 156 (299)
T cd02879 133 EEWRAAVKDEARSSGRPPLLLTAA 156 (299)
T ss_pred HHHHHHHHHHhhccCCCcEEEEee
Confidence 45555543 23 35666654
No 214
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.90 E-value=5.7e+02 Score=28.13 Aligned_cols=54 Identities=26% Similarity=0.409 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-CCeEEEEee
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSD 177 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~-G~k~Glw~~ 177 (408)
++.+.+.+.++.+ .++|.+.|+|= |-.|-..|. -+..+++.|++. ++.+++++-
T Consensus 146 ~~~~~~~~~~~~~-----~~~Gad~I~i~--------Dt~G~~~P~------~v~~lv~~lk~~~~~pi~~H~H 200 (582)
T TIGR01108 146 HTLETYLDLAEEL-----LEMGVDSICIK--------DMAGILTPK------AAYELVSALKKRFGLPVHLHSH 200 (582)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEC--------CCCCCcCHH------HHHHHHHHHHHhCCCceEEEec
Confidence 6889999999988 55678888773 344666665 389999998754 778888773
No 215
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=21.68 E-value=1.8e+02 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeec
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (408)
+.+++.+|.+|+++-.|+--.. ..++.+.++|||.|=-|+
T Consensus 194 ~~~v~~~~~~gl~v~~wTvn~~--------------~~~~~l~~~gvdgiiTD~ 233 (234)
T cd08570 194 QAFLPELKKNGKKVFVWTVNTE--------------EDMRYAIRLGVDGVITDD 233 (234)
T ss_pred HHHHHHHHHCCCEEEEEecCCH--------------HHHHHHHHCCCCEEEeCC
Confidence 6899999999999999985422 257788899999998775
No 216
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=21.67 E-value=6.2e+02 Score=24.49 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeC-Cc--cccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhc
Q 015338 158 IKALADYVHGKGLKLGIYSDA-GV--FTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNET 234 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~p-g~--~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~ 234 (408)
++.+++.+|+.|+.+=+...+ |. .+|. ..+.+....+...+.|.||||..+.. .-..|++.+..+
T Consensus 128 ~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~----~~~~i~~a~~~a~e~GAD~vKt~~~~--------~~~~l~~~~~~~ 195 (267)
T PRK07226 128 LGEVAEECEEWGMPLLAMMYPRGPGIKNEY----DPEVVAHAARVAAELGADIVKTNYTG--------DPESFREVVEGC 195 (267)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCccCCCc----cHHHHHHHHHHHHHHCCCEEeeCCCC--------CHHHHHHHHHhC
Confidence 667777777788877665422 11 1221 11223344566779999999998542 124555555555
Q ss_pred CCCceEe
Q 015338 235 GCSIFYS 241 (408)
Q Consensus 235 Gr~i~~s 241 (408)
.-|++.+
T Consensus 196 ~ipV~a~ 202 (267)
T PRK07226 196 PVPVVIA 202 (267)
T ss_pred CCCEEEE
Confidence 6777665
No 217
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.45 E-value=6.9e+02 Score=23.63 Aligned_cols=120 Identities=12% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCC-ccccCCCcc
Q 015338 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAG-VFTCQVRPG 188 (408)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg-~~~c~~~Pg 188 (408)
+.+..+.+ .++||+.|.|. -...+-..+. ..=+..++.+.+.+++.|+++-+.. |- ...|...|.
T Consensus 12 ~~~~~~~~-----~~~G~~~vel~---~~~~~~~~~~-----~~~~~~~~~l~~~~~~~gl~ls~h~-p~~~nl~s~d~~ 77 (273)
T smart00518 12 LYKAFIEA-----VDIGARSFQLF---LGNPRSWKGV-----RLSEETAEKFKEALKENNIDVSVHA-PYLINLASPDKE 77 (273)
T ss_pred HhHHHHHH-----HHcCCCEEEEE---CCCCCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEC-CceecCCCCCHH
Confidence 33455555 56788888883 2211111110 1112247888888999999975532 32 122322333
Q ss_pred ----chhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHh-----cCCCceEeeC
Q 015338 189 ----SLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNE-----TGCSIFYSLC 243 (408)
Q Consensus 189 ----s~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~-----~Gr~i~~s~c 243 (408)
+.++++..++.-++.|.++|=+=..........+.+..+.+.|++ .|-.+.++.+
T Consensus 78 ~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~ 141 (273)
T smart00518 78 KVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETT 141 (273)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEecc
Confidence 345667777888899999888622221112223445554455432 3344555654
No 218
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=21.32 E-value=2.8e+02 Score=26.88 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~ 184 (408)
.+.+.+.+.++.+ ++.|+..|.|=.++... ++..|..=++.+.+.+++.|+++- ...
T Consensus 62 ~~~eei~~~~~~~-----~~~g~~~~~l~~~g~~~----------~~~~~~~~~~~i~~~~~~~~i~~~--~~~------ 118 (296)
T TIGR00433 62 KKVDEVLEEARKA-----KAAGATRFCLVASGRGP----------KDREFMEYVEAMVQIVEEMGLKTC--ATL------ 118 (296)
T ss_pred CCHHHHHHHHHHH-----HHCCCCEEEEEEecCCC----------ChHHHHHHHHHHHHHHHhCCCeEE--ecC------
Confidence 4566778888877 44577776543333331 111111225666666666676652 121
Q ss_pred CCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 185 ~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
|... ++.++.+++.|++.+-+..-
T Consensus 119 ---g~~~--~e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 119 ---GLLD--PEQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred ---CCCC--HHHHHHHHHcCCCEEEEccc
Confidence 2111 46788999999999877644
No 219
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=21.03 E-value=2.6e+02 Score=28.66 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=57.9
Q ss_pred hhhcCCCCCHHHHHHHHHHHHH--cCCccCCceEEEeCCCccCCCCCCCCCeee-cCCCCCCCHH-HHHHHH----HHc-
Q 015338 98 WNFFACNISETIIKETADALVS--TGLAELGYDHVNIDDCWSSPLRDLKGQLVP-DTITFPSGIK-ALADYV----HGK- 168 (408)
Q Consensus 98 W~~~~~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~-d~~~FP~Glk-~l~~~i----h~~- 168 (408)
.+.+|.+ .++.+.+.|+++.+ ..|.++|+.+|+|||.-....-+..+.-.. ....-|+.+. .-++.+ .+.
T Consensus 154 ~~~~Y~~-~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p 232 (368)
T PRK06520 154 DATVYPD-LDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKP 232 (368)
T ss_pred chhcCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCC
Confidence 3345544 35666667766654 256789999999999864421111100000 0000122221 111222 333
Q ss_pred -CCeEEEEeeCCccccCCCccchhhHHhHHHH-HHHcCCcEEEeecCC
Q 015338 169 -GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPL-FASWGVDYLKYDNCF 214 (408)
Q Consensus 169 -G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~-~~~wGvdylK~D~~~ 214 (408)
++.++++++.|...- ++-..-+ ++..+.. |.+..||.+=+++..
T Consensus 233 ~d~~v~~HiC~Gn~~~-~~~~~~~-y~~i~~~L~~~~~vd~~~lE~~~ 278 (368)
T PRK06520 233 ADLTIGLHVCRGNFRS-TWISEGG-YEPVAETLFGGVNVDAFFLEYDN 278 (368)
T ss_pred CCcEEEEEeecCCCCC-ccccccc-hhHHHHHHHhhcCCCeEEEEecc
Confidence 677888777665321 1111112 3334554 678899998888854
No 220
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.02 E-value=4e+02 Score=25.33 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCC-CCCHHHHHHHHHHcCCeEEEEeeCCcccc-CCCc
Q 015338 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITF-PSGIKALADYVHGKGLKLGIYSDAGVFTC-QVRP 187 (408)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~F-P~Glk~l~~~ih~~G~k~Glw~~pg~~~c-~~~P 187 (408)
+.+.++.+ +++||+.|-|. ... .+. ......| +..++.+.+.+++.|+++.-...++...+ ...|
T Consensus 18 ~~e~~~~~-----~~~G~~~iEl~---~~~-~~~----~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~ 84 (284)
T PRK13210 18 WEERLVFA-----KELGFDFVEMS---VDE-SDE----RLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSR 84 (284)
T ss_pred HHHHHHHH-----HHcCCCeEEEe---cCC-ccc----ccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCC
Confidence 35566666 56788888883 111 000 0111112 22488899999999999853322211101 1122
Q ss_pred c------chhhHHhHHHHHHHcCCcEEEe
Q 015338 188 G------SLFHEKDDAPLFASWGVDYLKY 210 (408)
Q Consensus 188 g------s~~~~~~~~~~~~~wGvdylK~ 210 (408)
. +.++++..++.-+..|+++|.+
T Consensus 85 d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 85 DPATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 2 3445566777788999999987
No 221
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=21.01 E-value=8.7e+02 Score=26.67 Aligned_cols=223 Identities=19% Similarity=0.197 Sum_probs=107.3
Q ss_pred CCCCCceEEechhhcCCCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCC--CCeeecCCCCCC--------
Q 015338 87 LASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK--GQLVPDTITFPS-------- 156 (408)
Q Consensus 87 ~~~~pP~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~--G~~~~d~~~FP~-------- 156 (408)
+.+-|=.||=| .|....+.+...+.++.|. .+-+.-++.=| |+-.+-..- +.-.++ ..|++
T Consensus 99 W~~fPRYGfls--~f~~~~~~~~~~~~i~~L~-----~yHIN~~QFYD-W~~rH~~Pl~~~~~~~~-~~w~D~~~r~i~~ 169 (559)
T PF13199_consen 99 WTRFPRYGFLS--DFDKSKSAEDIEAEIDQLN-----RYHINGLQFYD-WMYRHHKPLPGTNGQPD-QTWTDWANRQIST 169 (559)
T ss_dssp TTSS--EEEE-----GGGGGHHHHHHHHHHHH-----HTT--EEEETS---SBTTB-S-SSS-EEE--TT-TTT--EEEH
T ss_pred cccCCcceEec--CCCCcCCchhHHHHHHHHH-----hhCcCeEEEEe-eccccCCcCCCCCCchh-hhhhhhcCCEehH
Confidence 45556566655 2333457888999999984 44455555532 654221110 111122 25544
Q ss_pred -CHHHHHHHHHHcCCeEEEEeeCCc------------------ccc---------------------CCCccchhhH-Hh
Q 015338 157 -GIKALADYVHGKGLKLGIYSDAGV------------------FTC---------------------QVRPGSLFHE-KD 195 (408)
Q Consensus 157 -Glk~l~~~ih~~G~k~Glw~~pg~------------------~~c---------------------~~~Pgs~~~~-~~ 195 (408)
=+|..++.+|+.|||.-.|...-. ..+ +++|+=+.|+ ++
T Consensus 170 ~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q 249 (559)
T PF13199_consen 170 STVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQ 249 (559)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHH
Confidence 379999999999999988864310 000 2334446666 46
Q ss_pred HHHHHHHcCCcEEEeecCCCCC-------C---CcccccHHHHHHHHhcC--CCceEee-CCCCCCChhh---hhhhccc
Q 015338 196 DAPLFASWGVDYLKYDNCFNLG-------I---EPKKRYPPMRDALNETG--CSIFYSL-CEWGVDDPAL---WAGKVGN 259 (408)
Q Consensus 196 ~~~~~~~wGvdylK~D~~~~~~-------~---~~~~~Y~~m~~AL~~~G--r~i~~s~-c~~g~~~p~~---w~~~~~n 259 (408)
..+.+...|||.+-+|-.+..+ . .....|..+.+++++.. .++++.- ..||...-+. -..-|..
T Consensus 250 ~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~a~~~~~d~lY~E 329 (559)
T PF13199_consen 250 MNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQIAKTSKVDFLYNE 329 (559)
T ss_dssp HHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHHTT-S--SSEEEE
T ss_pred HHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhhhcccccceeeee
Confidence 6677889999999999876321 1 12455667777776554 4566553 2344211110 0013556
Q ss_pred eeeecCCCCCChHHHHHHHHhhcccccccCC----CCcCCCCccccCCCCCChhhhHHHHHHHHHhcCceeeecC
Q 015338 260 SWRTTGDINDTWASMTSIADINDKWASYAGP----GGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCD 330 (408)
Q Consensus 260 ~wRis~Di~~~W~~~~~~~~~~~~~~~~~gp----g~wnDpDmL~vg~~~lT~~E~rt~~slwai~gsPL~ig~D 330 (408)
+| |..++...+...++.+..++.-.+. .++-.. --|+.-.-+-.++.|.-|+.|.+|++
T Consensus 330 vW----~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AAYmn~--------fn~~~vlLtdA~i~A~Gg~HlelGd~ 392 (559)
T PF13199_consen 330 VW----DDYDTYGDLKRIIDQNRKYTSSGGKSTVVAAYMNY--------FNTPSVLLTDAVIFASGGSHLELGDG 392 (559)
T ss_dssp ------SBS-BHHHHHHHHHHHHHHH---S--EEEE---------------HHHHHHHHHHHHHTT-EEE-ETTS
T ss_pred cc----cccccHHHHHHHHHHHhhhhccccchhhhHHHhhh--------ccchhhHHHHHHHHHCCCceeeecCC
Confidence 78 3455667777777654433100011 011111 12344555666778888899999873
No 222
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.00 E-value=6.4e+02 Score=23.53 Aligned_cols=75 Identities=13% Similarity=0.034 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCC
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~ 237 (408)
++.+.+..|+.|+++=+.....-..... .-+.+-+...++...+.|.||||..+.. ....+++..+.+..|
T Consensus 111 i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--------~~~~~~~i~~~~~~p 181 (235)
T cd00958 111 LARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAELGADIVKTKYTG--------DAESFKEVVEGCPVP 181 (235)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHHHCCCEEEecCCC--------CHHHHHHHHhcCCCC
Confidence 7888888899999987744321000000 0011222333566778999999995321 123455555566678
Q ss_pred ceEe
Q 015338 238 IFYS 241 (408)
Q Consensus 238 i~~s 241 (408)
++.+
T Consensus 182 vv~~ 185 (235)
T cd00958 182 VVIA 185 (235)
T ss_pred EEEe
Confidence 7654
No 223
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.98 E-value=97 Score=30.22 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCceEEEeCC
Q 015338 103 CNISETIIKETADALVSTGLAELGYDHVNIDD 134 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDD 134 (408)
..++.+.+++..+.+ ++.+|+||++|+
T Consensus 95 dalt~E~v~~vv~eL-----~~~~fDyIi~Ds 121 (272)
T COG2894 95 DALTPEGVKKVVNEL-----KAMDFDYIIIDS 121 (272)
T ss_pred ccCCHHHHHHHHHHH-----HhcCCCEEEecC
Confidence 358999999999998 668899999984
No 224
>PRK09505 malS alpha-amylase; Reviewed
Probab=20.89 E-value=2.7e+02 Score=31.27 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCC------C-------CCCCCCeeecC----CCCC--CCHHHHHHHH
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSP------L-------RDLKGQLVPDT----ITFP--SGIKALADYV 165 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~------~-------rd~~G~~~~d~----~~FP--~Glk~l~~~i 165 (408)
=+-+.|.+.++.+ +++|++.|.|=--+... . ....|.+..|- ..|. ..++.|++.+
T Consensus 227 Gdl~Gi~~kLdyl-----~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~a 301 (683)
T PRK09505 227 GDLRGLTEKLDYL-----QQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEA 301 (683)
T ss_pred CCHHHHHHhhHHH-----HHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHH
Confidence 3678888889988 77888877653222110 0 01124454431 2443 2499999999
Q ss_pred HHcCCeEE
Q 015338 166 HGKGLKLG 173 (408)
Q Consensus 166 h~~G~k~G 173 (408)
|++|||+=
T Consensus 302 H~~Gi~Vi 309 (683)
T PRK09505 302 HQRGIRIL 309 (683)
T ss_pred HHCCCEEE
Confidence 99999953
No 225
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.85 E-value=6e+02 Score=24.38 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEEe
Q 015338 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (408)
Q Consensus 157 Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK~ 210 (408)
-++..++++|++|++.-+..+-.. .-..+++...++.+.+.|+|.|-+
T Consensus 113 ~~~~~i~~ak~~G~~v~~~~~~~~------~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 113 VSEQHIGAARKLGMDVVGFLMMSH------MASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEEEecc------CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 389999999999998877664221 123577888899999999998754
No 226
>PLN02227 fructose-bisphosphate aldolase I
Probab=20.67 E-value=1.7e+02 Score=30.44 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCcc-----chhhHHhHHHHHHHcCCcEEEeecCCCC
Q 015338 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPG-----SLFHEKDDAPLFASWGVDYLKYDNCFNL 216 (408)
Q Consensus 159 k~l~~~ih~~G~k~Glw~~pg~~~c~~~Pg-----s~~~~~~~~~~~~~wGvdylK~D~~~~~ 216 (408)
+++++++.++|+-+||=++-|.....+.++ -++-+....+.+.+-|+.|=||-.....
T Consensus 131 ~pf~d~L~~~GIVPGIKVDKGl~~l~g~~~e~~tqGLDgL~~R~~~Y~~~GarFAKWRsVikI 193 (399)
T PLN02227 131 KKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSI 193 (399)
T ss_pred cCHHHHHHHCCCeeeEEcCCCcccCCCCCCCccCCChHHHHHHHHHHHHcCCceeehheeecc
Confidence 678999999999999999877543322222 1222333344555669999999876443
No 227
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=20.56 E-value=5.4e+02 Score=25.03 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCccchhhHHhHHHHHHHcCCcEEE
Q 015338 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLK 209 (408)
Q Consensus 158 lk~l~~~ih~~G~k~Glw~~pg~~~c~~~Pgs~~~~~~~~~~~~~wGvdylK 209 (408)
++.++++++++|+++-+..+..+. +..-..+++...++.+.+.|++.|-
T Consensus 121 ~~~~i~~ak~~G~~v~~~~~~~~d---~~~~~~~~~~~~~~~~~~~g~~~i~ 169 (273)
T cd07941 121 IRDSVAYLKSHGREVIFDAEHFFD---GYKANPEYALATLKAAAEAGADWLV 169 (273)
T ss_pred HHHHHHHHHHcCCeEEEeEEeccc---cCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 789999999999987664332211 1112367788888889999999876
No 228
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.40 E-value=4.5e+02 Score=23.11 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHH---cCCeEEEEeeCCcccc
Q 015338 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG---KGLKLGIYSDAGVFTC 183 (408)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~---~G~k~Glw~~pg~~~c 183 (408)
.+...+.++.+ +++|.+.+.+-.-+.... + + + +.++....+.+.+ .++.+-+|..|+..
T Consensus 64 ~~~~~~~a~~a-----~~~Gad~i~v~~~~~~~~-~--~----~----~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-- 125 (201)
T cd00945 64 TEVKVAEVEEA-----IDLGADEIDVVINIGSLK-E--G----D----WEEVLEEIAAVVEAADGGLPLKVILETRGL-- 125 (201)
T ss_pred HHHHHHHHHHH-----HHcCCCEEEEeccHHHHh-C--C----C----HHHHHHHHHHHHHHhcCCceEEEEEECCCC--
Confidence 56667777777 566888888754432210 0 0 0 1234444444544 38999999998753
Q ss_pred CCCccchhhHHhHHHHHHHcCCcEEEeecC
Q 015338 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (408)
Q Consensus 184 ~~~Pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (408)
...+.+....+...+-|+++||.-..
T Consensus 126 ----~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 126 ----KTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred ----CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 11233444455667889999996554
No 229
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.23 E-value=2.9e+02 Score=27.92 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCC-CCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEE
Q 015338 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL-RDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIY 175 (408)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~-rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw 175 (408)
.++++.+.-..+.+ .-|+..|++-...-... +-..+.+....+.+=.|++.|++.+|+.|=++.+=
T Consensus 30 ~~~~~~~~~y~~rA------~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~Q 96 (353)
T cd02930 30 DGIDRLAAFYAERA------RGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQ 96 (353)
T ss_pred CCCHHHHHHHHHHh------cCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEee
Confidence 46787777777754 23555555533222110 00112222333344457999999999999987644
No 230
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=20.23 E-value=3e+02 Score=31.37 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCC------CCHHHHHHHHHHcCCeEEEEe
Q 015338 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP------SGIKALADYVHGKGLKLGIYS 176 (408)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP------~Glk~l~~~ih~~G~k~Glw~ 176 (408)
..++-+..+++++.+ +++|+..+-+--=|-.......|+=.+|+++-- .|+..|+..+|++||-+=+=+
T Consensus 14 ~gFtF~~A~~~l~yl-----~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI 88 (889)
T COG3280 14 GGFTFADARALLDYL-----ADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI 88 (889)
T ss_pred CCCCHHHHHHhhHHH-----HhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe
Confidence 367888999999999 777877766654454422333477666665432 378999999999999766544
Q ss_pred eC
Q 015338 177 DA 178 (408)
Q Consensus 177 ~p 178 (408)
-|
T Consensus 89 VP 90 (889)
T COG3280 89 VP 90 (889)
T ss_pred cc
Confidence 44
No 231
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=20.14 E-value=8e+02 Score=26.04 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCccCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHc-CCeEEEEe--eCCcc
Q 015338 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYS--DAGVF 181 (408)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~-G~k~Glw~--~pg~~ 181 (408)
++.+.+.+.|+.+ .++|.+.|.| -|..|-+.|.. +..|+..+++. ++.+++++ +.|+.
T Consensus 151 ~~~~~~~~~a~~l-----~~~Gad~I~i--------~Dt~G~l~P~~------v~~lv~alk~~~~~pi~~H~Hnt~GlA 211 (448)
T PRK12331 151 HTIDYFVKLAKEM-----QEMGADSICI--------KDMAGILTPYV------AYELVKRIKEAVTVPLEVHTHATSGIA 211 (448)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEE--------cCCCCCCCHHH------HHHHHHHHHHhcCCeEEEEecCCCCcH
Q ss_pred ccCCCccchhhHHhHHHHHH--HcCCcEEEeecCCCCCCCcccccHHHHHHHHhcCCC
Q 015338 182 TCQVRPGSLFHEKDDAPLFA--SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (408)
Q Consensus 182 ~c~~~Pgs~~~~~~~~~~~~--~wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~Gr~ 237 (408)
. +..++ +.|+|+|-.=.+..+..........+..+|+..|.+
T Consensus 212 ~--------------AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 212 E--------------MTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred H--------------HHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
No 232
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.09 E-value=3.6e+02 Score=24.34 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=52.5
Q ss_pred cCCceEEEeCCCccCCCCCCCCCeeecCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCC-ccchhhHHhHHHHHHH
Q 015338 124 ELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVR-PGSLFHEKDDAPLFAS 202 (408)
Q Consensus 124 ~~G~~~~~iDDGW~~~~rd~~G~~~~d~~~FP~Glk~l~~~ih~~G~k~Glw~~pg~~~c~~~-Pgs~~~~~~~~~~~~~ 202 (408)
+.|+++++|=.+- |.-..|+ -++.-++..++.||++|+|.=. |... +.+.+-.+..++.+..
T Consensus 20 ~~g~~fviikate--------G~~~~D~-----~f~~n~~~a~~aGl~vG~Yhf~----~~~~~~~a~~eA~~f~~~~~~ 82 (177)
T cd06523 20 SKQLDLVIIRVQY--------GSNYVDL-----KYKNNIKEFKKRGIPFGVYAFA----RGTSTADAKAEARDFYNRANK 82 (177)
T ss_pred hCCCCEEEEEEeC--------CCcccCH-----HHHHHHHHHHHcCCCeEEEEEe----ccCCHHHHHHHHHHHHHHhcC
Confidence 3588888885432 2333554 3677788899999999999743 2111 1122222222333333
Q ss_pred cCCcEEEeecCCCCCCCcccccHHHHHHHHhcC-CC-ceEe
Q 015338 203 WGVDYLKYDNCFNLGIEPKKRYPPMRDALNETG-CS-IFYS 241 (408)
Q Consensus 203 wGvdylK~D~~~~~~~~~~~~Y~~m~~AL~~~G-r~-i~~s 241 (408)
.-.++=+|.-..........-.++.+.+++.| .+ ++++
T Consensus 83 -~~~~~~lD~E~~~~~~~~~~~~~f~~~v~~~g~~~~~lYt 122 (177)
T cd06523 83 -KPTFYVLDVEVTSMSDMNAGVQAFISELRRLGAKKVGLYI 122 (177)
T ss_pred -CCceEEEeeccCCcchHHHHHHHHHHHHHHccCCcEEEEc
Confidence 44566677654332111222245566666554 45 4554
Done!