Query 015340
Match_columns 408
No_of_seqs 380 out of 2211
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 7.9E-56 1.7E-60 424.1 27.6 275 127-408 6-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 3.6E-53 7.8E-58 417.5 31.4 304 94-408 2-306 (308)
3 PRK12895 ubiA prenyltransferas 100.0 1.2E-36 2.7E-41 296.3 29.8 260 104-392 2-264 (286)
4 PRK12870 ubiA 4-hydroxybenzoat 100.0 6.7E-36 1.5E-40 292.7 27.9 261 101-392 5-272 (290)
5 PLN02809 4-hydroxybenzoate non 100.0 1.8E-35 3.9E-40 289.1 29.9 260 102-392 3-270 (289)
6 TIGR01475 ubiA_other putative 100.0 1.6E-35 3.5E-40 289.1 29.5 261 104-392 1-264 (282)
7 PRK13106 ubiA prenyltransferas 100.0 1.4E-35 3E-40 291.2 28.7 275 100-403 10-297 (300)
8 PRK12874 ubiA prenyltransferas 100.0 5.3E-35 1.1E-39 286.4 31.1 265 100-392 3-272 (291)
9 PRK12888 ubiA prenyltransferas 100.0 9.3E-35 2E-39 283.7 30.9 268 105-402 2-282 (284)
10 PRK12873 ubiA prenyltransferas 100.0 6.4E-35 1.4E-39 284.8 29.0 266 102-396 4-281 (294)
11 PRK12886 ubiA prenyltransferas 100.0 6.7E-34 1.4E-38 278.7 31.5 266 101-396 4-273 (291)
12 PRK12848 ubiA 4-hydroxybenzoat 100.0 4E-34 8.7E-39 279.3 29.4 259 102-391 2-265 (282)
13 PRK12876 ubiA prenyltransferas 100.0 7.3E-34 1.6E-38 277.4 31.1 278 103-408 2-299 (300)
14 COG0382 UbiA 4-hydroxybenzoate 100.0 4.5E-34 9.7E-39 279.9 29.5 271 100-400 5-280 (289)
15 PRK12847 ubiA 4-hydroxybenzoat 100.0 1.8E-33 3.8E-38 275.2 31.0 267 101-397 3-275 (285)
16 PRK12882 ubiA prenyltransferas 100.0 9.6E-34 2.1E-38 275.8 28.0 265 104-397 3-269 (276)
17 PRK12392 bacteriochlorophyll c 100.0 1.9E-33 4.1E-38 279.4 30.6 255 101-377 8-270 (331)
18 PRK12884 ubiA prenyltransferas 100.0 1.5E-33 3.3E-38 274.6 28.8 259 103-392 2-261 (279)
19 TIGR01474 ubiA_proteo 4-hydrox 100.0 2.2E-33 4.8E-38 273.9 29.6 259 105-392 1-264 (281)
20 PRK12878 ubiA 4-hydroxybenzoat 100.0 4.5E-33 9.8E-38 275.4 31.4 267 97-392 22-296 (314)
21 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.6E-33 3.4E-38 274.8 27.7 254 104-389 2-257 (279)
22 PLN00012 chlorophyll synthetas 100.0 5.8E-33 1.3E-37 279.5 31.2 224 100-342 80-310 (375)
23 PRK07566 bacteriochlorophyll/c 100.0 8.7E-33 1.9E-37 273.7 30.7 227 101-345 23-250 (314)
24 TIGR01476 chlor_syn_BchG bacte 100.0 4.1E-33 9E-38 272.3 27.2 222 106-346 1-223 (283)
25 PRK04375 protoheme IX farnesyl 100.0 6.8E-32 1.5E-36 265.3 30.8 268 102-396 7-278 (296)
26 PRK12869 ubiA protoheme IX far 100.0 2E-31 4.3E-36 260.0 31.6 267 104-399 1-272 (279)
27 TIGR02056 ChlG chlorophyll syn 100.0 2.4E-31 5.1E-36 262.6 29.8 228 100-346 11-245 (306)
28 TIGR01473 cyoE_ctaB protoheme 100.0 1.4E-30 3E-35 254.2 29.6 267 106-399 1-273 (280)
29 PRK12883 ubiA prenyltransferas 100.0 1.2E-30 2.7E-35 254.1 28.5 198 104-323 2-199 (277)
30 PRK05951 ubiA prenyltransferas 100.0 3.2E-30 7E-35 253.4 30.6 267 104-392 3-278 (296)
31 PRK13595 ubiA prenyltransferas 100.0 5.3E-30 1.1E-34 248.7 28.5 266 101-402 8-277 (292)
32 PRK13362 protoheme IX farnesyl 100.0 1.9E-29 4.2E-34 248.6 32.5 204 101-323 9-215 (306)
33 PRK06080 1,4-dihydroxy-2-napht 100.0 4.1E-29 9E-34 245.2 31.3 230 104-355 2-239 (293)
34 KOG1381 Para-hydroxybenzoate-p 100.0 5.8E-31 1.3E-35 246.6 12.4 270 95-392 54-328 (353)
35 PRK12871 ubiA prenyltransferas 100.0 1.5E-27 3.2E-32 234.3 30.2 260 103-391 3-278 (297)
36 PRK13387 1,4-dihydroxy-2-napht 100.0 1.7E-27 3.7E-32 236.0 30.3 223 105-348 3-253 (317)
37 PRK08238 hypothetical protein; 100.0 8.7E-27 1.9E-31 242.1 23.9 221 64-311 154-377 (479)
38 PRK13105 ubiA prenyltransferas 100.0 4.5E-26 9.7E-31 221.7 26.2 218 105-348 1-224 (282)
39 PLN02922 prenyltransferase 100.0 2.1E-25 4.4E-30 220.6 31.1 233 103-350 13-254 (315)
40 PRK07419 1,4-dihydroxy-2-napht 99.9 4.7E-25 1E-29 217.0 30.4 227 101-350 8-240 (304)
41 PLN02776 prenyltransferase 99.9 3E-25 6.5E-30 220.0 28.8 259 111-399 1-266 (341)
42 PF01040 UbiA: UbiA prenyltran 99.9 5E-26 1.1E-30 217.3 21.8 186 120-323 4-191 (257)
43 TIGR00751 menA 1,4-dihydroxy-2 99.9 2E-25 4.4E-30 217.9 26.2 216 113-349 1-229 (284)
44 PRK12872 ubiA prenyltransferas 99.9 1.5E-25 3.2E-30 219.0 24.3 222 103-348 2-225 (285)
45 PRK12875 ubiA prenyltransferas 99.9 2.2E-24 4.7E-29 210.3 26.8 221 101-348 4-229 (282)
46 TIGR02235 menA_cyano-plnt 1,4- 99.9 7.2E-24 1.6E-28 207.1 30.2 220 108-350 2-227 (285)
47 COG1575 MenA 1,4-dihydroxy-2-n 99.9 2.2E-23 4.7E-28 201.7 29.5 231 104-355 7-247 (303)
48 COG0109 CyoE Polyprenyltransfe 99.9 1E-23 2.2E-28 203.6 21.9 204 101-323 14-220 (304)
49 PRK13591 ubiA prenyltransferas 99.9 5.1E-23 1.1E-27 200.9 26.2 173 153-348 67-243 (307)
50 PRK12324 phosphoribose diphosp 99.9 2.4E-22 5.1E-27 196.9 24.1 146 101-256 7-154 (295)
51 PRK13592 ubiA prenyltransferas 99.9 3.9E-22 8.4E-27 193.2 25.0 175 145-340 47-229 (299)
52 KOG1380 Heme A farnesyltransfe 99.4 9.4E-13 2E-17 127.2 8.4 264 102-399 91-362 (409)
53 KOG4581 Predicted membrane pro 99.2 2.7E-11 5.8E-16 112.2 6.7 228 102-350 58-295 (359)
54 COG1575 MenA 1,4-dihydroxy-2-n 90.0 0.98 2.1E-05 44.7 7.1 47 146-194 178-224 (303)
55 PRK12872 ubiA prenyltransferas 86.9 3.2 6.9E-05 40.4 8.6 33 153-185 170-203 (285)
56 PRK13387 1,4-dihydroxy-2-napht 86.7 2.5 5.5E-05 42.2 7.9 48 149-199 194-242 (317)
57 PRK13591 ubiA prenyltransferas 86.7 2.6 5.6E-05 42.0 7.8 24 162-185 197-221 (307)
58 PLN00012 chlorophyll synthetas 86.3 3.6 7.7E-05 42.2 8.8 33 153-185 261-294 (375)
59 PLN02922 prenyltransferase 85.8 3.5 7.7E-05 41.2 8.3 44 149-195 193-237 (315)
60 PRK07419 1,4-dihydroxy-2-napht 85.7 3.6 7.9E-05 40.9 8.3 39 153-194 183-222 (304)
61 TIGR01474 ubiA_proteo 4-hydrox 84.4 8.4 0.00018 37.7 10.1 37 150-186 166-203 (281)
62 PRK07566 bacteriochlorophyll/c 84.3 4.1 8.9E-05 40.6 8.0 31 155-185 200-231 (314)
63 PRK13105 ubiA prenyltransferas 83.3 6.2 0.00013 38.9 8.6 57 151-210 167-224 (282)
64 PRK12875 ubiA prenyltransferas 82.8 13 0.00027 36.7 10.6 51 152-205 173-224 (282)
65 TIGR02056 ChlG chlorophyll syn 82.7 6 0.00013 39.3 8.4 32 154-185 193-225 (306)
66 PRK04214 rbn ribonuclease BN/u 81.9 18 0.0004 37.4 12.0 21 151-171 112-132 (412)
67 PRK06080 1,4-dihydroxy-2-napht 81.6 7.2 0.00016 38.2 8.5 47 150-199 174-221 (293)
68 PRK12392 bacteriochlorophyll c 80.9 6.3 0.00014 39.7 7.9 34 152-185 188-222 (331)
69 TIGR01476 chlor_syn_BchG bacte 80.7 7.7 0.00017 37.8 8.3 32 154-185 171-203 (283)
70 PRK12884 ubiA prenyltransferas 80.0 12 0.00026 36.3 9.4 34 287-321 46-79 (279)
71 TIGR02235 menA_cyano-plnt 1,4- 79.7 8.5 0.00018 37.9 8.2 45 152-199 169-214 (285)
72 TIGR01475 ubiA_other putative 79.1 12 0.00026 36.5 9.1 35 151-185 165-200 (282)
73 PRK12886 ubiA prenyltransferas 78.7 7.2 0.00016 38.4 7.4 36 151-186 169-205 (291)
74 COG0382 UbiA 4-hydroxybenzoate 78.4 28 0.0006 34.1 11.5 36 288-323 57-93 (289)
75 PRK12847 ubiA 4-hydroxybenzoat 77.7 11 0.00023 36.9 8.3 36 150-185 171-207 (285)
76 PRK12848 ubiA 4-hydroxybenzoat 76.9 11 0.00023 37.0 7.9 38 149-186 167-205 (282)
77 PRK12888 ubiA prenyltransferas 76.4 11 0.00025 36.9 8.0 35 151-185 166-201 (284)
78 PRK12871 ubiA prenyltransferas 75.9 13 0.00027 36.9 8.2 36 151-186 182-218 (297)
79 PRK13592 ubiA prenyltransferas 75.8 23 0.0005 35.2 9.9 35 285-320 53-87 (299)
80 PRK12324 phosphoribose diphosp 74.6 16 0.00036 36.1 8.6 30 291-320 59-89 (295)
81 TIGR00751 menA 1,4-dihydroxy-2 74.3 13 0.00028 36.6 7.8 41 153-196 173-214 (284)
82 PRK12883 ubiA prenyltransferas 73.7 13 0.00027 36.2 7.6 30 156-185 166-196 (277)
83 PRK12887 ubiA tocopherol phyty 73.5 14 0.00031 36.7 8.0 33 152-184 190-223 (308)
84 PF01040 UbiA: UbiA prenyltran 70.5 44 0.00096 31.3 10.4 34 289-322 34-68 (257)
85 PRK12882 ubiA prenyltransferas 70.0 21 0.00046 34.6 8.2 32 154-185 167-199 (276)
86 PRK13106 ubiA prenyltransferas 69.4 17 0.00036 36.1 7.4 36 150-185 183-219 (300)
87 PRK09573 (S)-2,3-di-O-geranylg 69.1 36 0.00078 33.1 9.6 33 287-320 46-78 (279)
88 PRK12874 ubiA prenyltransferas 67.4 17 0.00038 35.8 7.0 35 151-185 174-209 (291)
89 PRK12873 ubiA prenyltransferas 66.8 38 0.00082 33.6 9.2 33 290-322 56-89 (294)
90 PLN02809 4-hydroxybenzoate non 65.9 37 0.0008 33.5 8.9 34 289-322 56-90 (289)
91 PRK12870 ubiA 4-hydroxybenzoat 64.8 57 0.0012 32.1 10.1 38 150-187 172-210 (290)
92 PRK12878 ubiA 4-hydroxybenzoat 62.6 65 0.0014 32.1 10.1 34 152-185 200-234 (314)
93 PRK12869 ubiA protoheme IX far 61.1 76 0.0016 30.9 10.1 35 287-321 45-80 (279)
94 PRK05951 ubiA prenyltransferas 59.7 42 0.00091 33.1 8.1 35 154-191 181-216 (296)
95 PRK13595 ubiA prenyltransferas 56.2 65 0.0014 31.9 8.7 21 292-312 61-81 (292)
96 PRK04375 protoheme IX farnesyl 55.4 1.5E+02 0.0033 29.0 11.3 32 289-320 55-87 (296)
97 PRK08238 hypothetical protein; 51.4 63 0.0014 34.3 8.2 31 291-321 239-270 (479)
98 TIGR01473 cyoE_ctaB protoheme 51.3 83 0.0018 30.5 8.6 33 288-320 45-78 (280)
99 PRK13362 protoheme IX farnesyl 50.9 85 0.0018 31.2 8.7 35 287-321 56-91 (306)
100 COG1295 Rbn Ribonuclease BN fa 50.1 2.6E+02 0.0057 27.5 13.1 23 149-171 111-133 (303)
101 PRK12876 ubiA prenyltransferas 46.5 2.9E+02 0.0063 27.5 11.6 30 292-321 61-91 (300)
102 PRK12895 ubiA prenyltransferas 45.9 2.6E+02 0.0055 27.6 11.1 35 150-184 165-200 (286)
103 PRK01637 hypothetical protein; 45.7 3E+02 0.0064 26.8 12.8 23 151-173 104-126 (286)
104 PLN02878 homogentisate phytylt 45.0 86 0.0019 30.9 7.5 42 154-198 166-208 (280)
105 PLN02776 prenyltransferase 43.1 1.5E+02 0.0033 30.1 9.1 35 287-321 38-73 (341)
106 PF03631 Virul_fac_BrkB: Virul 33.5 4.2E+02 0.009 25.0 13.3 21 149-169 81-101 (260)
107 COG4125 Predicted membrane pro 26.9 3.2E+02 0.0069 24.1 7.1 21 154-174 51-71 (149)
108 PRK11383 hypothetical protein; 26.3 4.6E+02 0.01 23.2 8.8 17 290-306 115-131 (145)
109 PF06645 SPC12: Microsomal sig 23.2 2.3E+02 0.0049 22.2 5.2 19 193-211 15-33 (76)
110 KOG4112 Signal peptidase subun 22.5 2.7E+02 0.0058 22.9 5.5 49 186-237 23-73 (101)
111 PF04284 DUF441: Protein of un 20.4 5.2E+02 0.011 22.8 7.3 15 179-193 59-73 (140)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=7.9e-56 Score=424.07 Aligned_cols=275 Identities=57% Similarity=1.020 Sum_probs=252.7
Q ss_pred HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHH
Q 015340 127 NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206 (408)
Q Consensus 127 g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~l~~l~l~la 206 (408)
..++|.+..+|.++.++.+++.+++++.+++.+..++||++|+|+||+|||+||+|||++|+++|+.++..+.++|++++
T Consensus 6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la 85 (280)
T PLN02878 6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG 85 (280)
T ss_pred HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35667676677776677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHH
Q 015340 207 VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF 286 (408)
Q Consensus 207 ~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~ 286 (408)
+.+|++++.+++..+++++++||.++||+|+||++++...|...++++..++|+|.|++++++|++ ..++++.++..++
T Consensus 86 ~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~-~~~~~~~~~~~~f 164 (280)
T PLN02878 86 WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRP-AVFTRPLIFATAF 164 (280)
T ss_pred HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCc-cccchhHHHHHHH
Confidence 999988888877788789999998889999999999999999888889999999999999999975 3455566666667
Q ss_pred HHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 015340 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGI 366 (408)
Q Consensus 287 ~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i 366 (408)
++++..+++++||++|+|||++.|+||+|+++|++++ .+++..++.++|+..++.|..++..+.+.++..+|.+
T Consensus 165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~------~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~ 238 (280)
T PLN02878 165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRV------FWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGI 238 (280)
T ss_pred HHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHH------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999 9999999999999999999888888888899999999
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhccccCC
Q 015340 367 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 408 (408)
Q Consensus 367 ~a~~l~~~~~~vd~~~~~~~~~f~~~iw~l~~~ey~~~p~~~ 408 (408)
++..+|+|.+++|.+++++..+|||||||+||+||+++|++|
T Consensus 239 l~~~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 239 LASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HHHHHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=3.6e-53 Score=417.45 Aligned_cols=304 Identities=32% Similarity=0.578 Sum_probs=254.3
Q ss_pred chhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 015340 94 SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172 (408)
Q Consensus 94 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~-~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~D 172 (408)
|++.+++.++.+++|+|++|||+++++.++++.+.+++.....+. ....+...+.++++...++.+++.+||++|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456678888899999999999999999999988887764322221 1112333445555556666666669999999999
Q ss_pred ccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340 173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (408)
Q Consensus 173 r~nk~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~ 252 (408)
|+|||+||++||++|+++++.+..++.++++.+++.+|++.+ +..+++.+++++|| .||+|+||+++.++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~-~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLL-ITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999985544 44467888999999 599999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL 332 (408)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i 332 (408)
|.++.+|.+.+......+. ..++...+++.++.++|+.+++++||++|+|||++.|+||+|+++|+|++ .++
T Consensus 159 g~i~~~g~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a------~~l 230 (308)
T PRK12887 159 GVIVNLGLFLHFQWLLGGS--VLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAV------FKL 230 (308)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHH------HHH
Confidence 9888888876544322222 13456666777788899999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhccccCC
Q 015340 333 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 408 (408)
Q Consensus 333 ~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~iw~l~~~ey~~~p~~~ 408 (408)
+..++.++|+..++.+......+...++.++|++++.++++|.+++|.+|+++.++|||||||+||+||+++|+.|
T Consensus 231 ~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 231 SCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887776666666677799999999999999999999999999999999999999999999865
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-36 Score=296.33 Aligned_cols=260 Identities=16% Similarity=0.131 Sum_probs=205.3
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCCcc
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL 181 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~RPl 181 (408)
++|+|+|++||++...+....+.|.++|.+...+ +. .+++.+++.+++++++|++||+.|+|+|++|+ |+||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~--~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIH--PI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 4789999999999998888888899888543222 21 24456678889999999999999999999995 49999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHH
Q 015340 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (408)
Q Consensus 182 asG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~ 261 (408)
|+|++|+++|+.+..+++++++.+++.+|+.++.++. ....+...|++ +||+++++++.+|+..|..+..|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999987766553 44555566774 7999999999998877754444443
Q ss_pred HHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
++.|+. +.....+++.+...+|+.++|++|++||+|+|+|.|+||+|+++|++++ .++...+..++.
T Consensus 150 -----Av~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~------~~i~~~~~~~~~ 216 (286)
T PRK12895 150 -----AVIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNG------LYISDIFHISSL 216 (286)
T ss_pred -----HHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccH------HHHHHHHHHHHH
Confidence 234432 1223345667788999999999999999999999999999999999999 777766666666
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHHH
Q 015340 342 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYMF 392 (408)
Q Consensus 342 ~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~-~~f~~~ 392 (408)
......|.... .+ +|.++.++.+..+.+|+..+|.+|+++| ..||..
T Consensus 217 ~~~~~~g~~~~-~~---~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~ 264 (286)
T PRK12895 217 ILFWISGIYIR-TL---WYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNA 264 (286)
T ss_pred HHHHHHHHHHh-hH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66666665443 33 4557888889999999999999999999 666653
No 4
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=6.7e-36 Score=292.74 Aligned_cols=261 Identities=17% Similarity=0.195 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHccchhHHHHH---HHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC
Q 015340 101 FLKKFHALYRFMRAYACAGVII---ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP 177 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l---~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~ 177 (408)
.++++++|+|++|++++.+..+ +.+.|.++|.+..++ +. .+++.+++.+++++++|++||++|+|+|++++|
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 4568899999999999887774 556788887554333 22 245677888999999999999999999987553
Q ss_pred --CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhH
Q 015340 178 --YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (408)
Q Consensus 178 --~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~ 255 (408)
+||+|||++|++++..+..++.++++.+++.+|+.++.+++ .+.++.+.||+ .||++.++++.+++.+|..
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 89999999999999999999999999999989876666553 45556788985 6999989998887776654
Q ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS 335 (408)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ 335 (408)
+..|+.. +.|. .+...+++.+..++|+.+++++|+++|+|+|+|+|+||+|+++|++++ .+++.
T Consensus 153 ~l~g~~a-----~~g~----~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~------~~~~~- 216 (290)
T PRK12870 153 VLISWSA-----VTGH----LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAP------EAIGL- 216 (290)
T ss_pred HHHHHHH-----HcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccH------HHHHH-
Confidence 4444332 3444 355566677788999999999999999999999999999999999998 66655
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHc--cCCCHHHHHHHHHH
Q 015340 336 MLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASILSFYMF 392 (408)
Q Consensus 336 ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v--d~~~~~~~~~f~~~ 392 (408)
+..+....+...++..+.++ .|..+..+.+..+.+++..+ |.+|++.|.+||..
T Consensus 217 ~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~ 272 (290)
T PRK12870 217 FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQ 272 (290)
T ss_pred HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 33334444445566655555 33356677788889999888 87889888888764
No 5
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=1.8e-35 Score=289.15 Aligned_cols=260 Identities=18% Similarity=0.161 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHccchhHHHHHHH---HHHHHhcc--ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 015340 102 LKKFHALYRFMRAYACAGVIIAT---TSNSLLPV--QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (408)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~---~~g~llA~--~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk 176 (408)
++++++|+|++|.+++.+..+.. ..|..++. +..++ +. .+++.+++..++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~--~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~ 77 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD--LK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVE 77 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 46899999999999987776655 34555543 22222 21 24567888899999999999999999999876
Q ss_pred --CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340 177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (408)
Q Consensus 177 --~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~ 254 (408)
|+||+|+|++|+++++.+..++.++++.+++.+|..++.++ +++.++.+.||+ +||++.++++.+++..+.
T Consensus 78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~ 150 (289)
T PLN02809 78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW 150 (289)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence 49999999999999999999999999999998887666555 355666789985 799999999988776554
Q ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHH-HHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHH
Q 015340 255 LTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLS 333 (408)
Q Consensus 255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i-~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~ 333 (408)
.+.+|+. ++.|+. +...+ .++....+|+.+++++++++|+|||+|.|+||+|+++|++.. .+++
T Consensus 151 ~~l~g~~-----av~g~~----~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~------~~i~ 215 (289)
T PLN02809 151 GALLGWA-----AVKGSL----DPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTK------LWLT 215 (289)
T ss_pred HHHHHHH-----HHhCCC----ChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHH------HHHH
Confidence 4444432 344542 33333 366678889999999999999999999999999999999977 6666
Q ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340 334 VSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 392 (408)
Q Consensus 334 ~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~ 392 (408)
. +..+++..+..+|......+ .+.+++.+.+..+++|++.+|.+|+++|.++|..
T Consensus 216 ~-~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~ 270 (289)
T PLN02809 216 G-FGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFVS 270 (289)
T ss_pred H-HHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4 56666776667777666655 3335788888899999999999999999888763
No 6
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=1.6e-35 Score=289.11 Aligned_cols=261 Identities=20% Similarity=0.227 Sum_probs=203.4
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC--CCCCcc
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPL 181 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~n--k~~RPl 181 (408)
++++|+|++||++...+.+....|.++|.+..++ +. ..++.+++.+++++++|++||++|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 3689999999999999877777788888554333 22 2556788999999999999999999999998 569999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHH
Q 015340 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (408)
Q Consensus 182 asG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~ 261 (408)
|+|++|++++..+..++.++++.+++.+|..+..++. .+.++.+.|+. +||++.++++++++..|..+..|+.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~ 148 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV 148 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888888888888866655443 44555788984 7999999999988776655545543
Q ss_pred HHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
. +.|.. +.....+++....++|+.+++++||++|+|+|+++|+||+|+++|+|++ .+++.....+++
T Consensus 149 a-----~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a------~~~~~~~~~~~~ 215 (282)
T TIGR01475 149 A-----VIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAA------LKIASLSHVITF 215 (282)
T ss_pred H-----HhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHH------HHHHHHHHHHHH
Confidence 2 33442 1114455666778899999999999999999999999999999999988 777777677777
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHH-HHHH
Q 015340 342 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS-FYMF 392 (408)
Q Consensus 342 ~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~-f~~~ 392 (408)
.+.++.+...+.++ .|.++..+.+..+.++.+.+|.+|+++|++ |+..
T Consensus 216 ~~~~~~~~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~ 264 (282)
T TIGR01475 216 ILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA 264 (282)
T ss_pred HHHHHHHHHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 76666666555555 333455566678889999999999988876 5554
No 7
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-35 Score=291.16 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--C
Q 015340 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--P 177 (408)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~ 177 (408)
..++++++|+|++||++.+...++.+.|.++|.+..++ +. .+++.+++.+++++++|++||++|+|+|++|+ |
T Consensus 10 ~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~ 84 (300)
T PRK13106 10 NTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK 84 (300)
T ss_pred hhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence 35668999999999999999988888899888654333 22 24567789999999999999999999999985 5
Q ss_pred CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHH
Q 015340 178 YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (408)
Q Consensus 178 ~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~ 257 (408)
+||+|+|++|+++++.+..++.+.++.+++.+|+.+..++. +..++...|++ +||++.++++.+++.+|..+.
T Consensus 85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~ 157 (300)
T PRK13106 85 NRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAVF 157 (300)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHHH
Confidence 89999999999999999877777777777888876665553 44455678984 799999999999887775555
Q ss_pred HHHHHHHHHHHhcCCcc----cCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHH
Q 015340 258 FPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLS 333 (408)
Q Consensus 258 lg~~~~~~~~v~g~~~~----~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~ 333 (408)
.|+.. +.|.... ..+...+++....++|+.++|++|++||+|+|+|.|+||+|+++| +++ .+++
T Consensus 158 ~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a------~~~~ 225 (300)
T PRK13106 158 SGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWA------LTFA 225 (300)
T ss_pred HHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhH------HHHH
Confidence 55533 2342200 112334555667889999999999999999999999999999999 777 6777
Q ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH-------HHHHHHHHHhc
Q 015340 334 VSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF-------IWKLYYAEYLL 403 (408)
Q Consensus 334 ~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~-------iw~l~~~ey~~ 403 (408)
..+..++-.+..+.+.....++ .|..+..+...++.+|+..++.+ +.|...|.. ++.++.+++++
T Consensus 226 ~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F~~n~~ig~~~~~~~~~~~~~ 297 (300)
T PRK13106 226 GLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK--GDFGRAFYYNIYSSIVLGLGIIIDVLL 297 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 7776666666666676666665 34457777888999999999876 556444442 55556666543
No 8
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.3e-35 Score=286.39 Aligned_cols=265 Identities=18% Similarity=0.173 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccC---CCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 015340 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL---ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (408)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~---~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk 176 (408)
+.++++++|+|++||++.+.+....+.|.++|.... ...++. .+++++++.+++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~ 79 (291)
T PRK12874 3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNP 79 (291)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence 355689999999999999999888888888775211 112332 25667888899999999999999999999998
Q ss_pred C--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340 177 P--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (408)
Q Consensus 177 ~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~ 254 (408)
| +||+|||++|+++++.++.++.++++.+++.+|+.+..+. +..+++...||+ +||++.++++.+++..|.
T Consensus 80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~ 152 (291)
T PRK12874 80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGL 152 (291)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHH
Confidence 4 8999999999999999999888888888888887766555 345556788995 799999999999887776
Q ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHH
Q 015340 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV 334 (408)
Q Consensus 255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~ 334 (408)
.+.+|+.. +.|. .+.+.+++.+..++|+.+++++|+++|+|+|+++|+||+|+++|++++ .++..
T Consensus 153 ~~l~G~~a-----v~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~------~~~~~ 217 (291)
T PRK12874 153 APIAGVVA-----VLGE----IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKAT------LFISR 217 (291)
T ss_pred HHHHHHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhH------HHHHH
Confidence 66566543 4444 355556666778899999999999999999999999999999999998 55554
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340 335 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 392 (408)
Q Consensus 335 ~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~ 392 (408)
....+.....+..+......+ ++.++..+.+..+.++.+.++.+|++.|+.||..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~s 272 (291)
T PRK12874 218 LFHLLAVLFWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTL 272 (291)
T ss_pred HHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 444444444444444333333 3445666778888899888887778789888775
No 9
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.3e-35 Score=283.74 Aligned_cols=268 Identities=17% Similarity=0.161 Sum_probs=206.1
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHHhcc---ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCC
Q 015340 105 FHALYRFMRAYACAGVIIATTSNSLLPV---QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (408)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~---~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~R 179 (408)
+++++++.|+++.+......+.+.+.+. ++. +++. .+++.+++.+++++++|++||++|+|+|++|+ |+|
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~R 76 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGS--VHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGR 76 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCC
Confidence 6789999999998876665555555553 222 2232 24567889999999999999999999999998 589
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHH
Q 015340 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (408)
Q Consensus 180 PlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg 259 (408)
|+|+|++|+++++.+..++..+++.++..+|+.++.++. ++++....|++ .||++.++++.+++..+..+..|
T Consensus 77 PL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g 149 (284)
T PRK12888 77 ELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGA 149 (284)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHH
Confidence 999999999999999988888888888888876665543 44445678985 69999999999887766444444
Q ss_pred HHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHH
Q 015340 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSI 339 (408)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~ 339 (408)
++. +.|. .++..+++.+..++|+.+++++|++||+|+|++.|+||+|+++|+|++ .+++..+..+
T Consensus 150 ~~a-----~~g~----~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a------~~~~~~~~~~ 214 (284)
T PRK12888 150 WIA-----VTGT----WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAA------LWASRVAHVV 214 (284)
T ss_pred HHH-----HcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhH------HHHHHHHHHH
Confidence 332 3344 355667777788999999999999999999999999999999999999 6766666666
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHH-H------HHHHHHHHHh
Q 015340 340 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFYM-F------IWKLYYAEYL 402 (408)
Q Consensus 340 ~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~-~f~~-~------iw~l~~~ey~ 402 (408)
.+.+..+.+.....++ .|..+..+.+..+.+|++.+|.+|++.|. .||. . ++.++.++++
T Consensus 215 ~~~ll~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ig~~~~~~~~~~~~ 282 (284)
T PRK12888 215 TFALFVWFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGFVGIALFGFALLDLL 282 (284)
T ss_pred HHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666666666666666 33457778889999999999999999886 6562 2 5555555553
No 10
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.4e-35 Score=284.78 Aligned_cols=266 Identities=15% Similarity=0.047 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHccchhHHHHHHHH---HHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC-
Q 015340 102 LKKFHALYRFMRAYACAGVIIATT---SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP- 177 (408)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~---~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~- 177 (408)
++++++|+|++|+++|.++.+.++ .|.+++.+..++ .. .++..+++.+++++++|++||+.|+|+|++|+|
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~--~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT 78 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS--LL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT 78 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence 346889999999999999888764 566666433222 21 256788899999999999999999999998765
Q ss_pred -CCcccccccChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340 178 -YLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (408)
Q Consensus 178 -~RPlasG~is~~~a~~~~~~l~~l~l~la~~l----~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~ 252 (408)
+||+|+|++|+++|+.+..++.++++.+++.+ |..++.+++ ++++....||+ +||++.+.++.+++..
T Consensus 79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~ 151 (294)
T PRK12873 79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCW 151 (294)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHH
Confidence 99999999999999999999999998887765 444555443 44456788995 7999999999998776
Q ss_pred hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL 332 (408)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i 332 (408)
+..+.+|+. ++.|+. +.....+++++..++|+.++|++++++|+|||+|+|+||+|+++|++.. .+
T Consensus 152 a~~~l~gw~-----Av~g~~--~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-------~~ 217 (294)
T PRK12873 152 GFAVLIPWA-----AAEGSL--NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-------KT 217 (294)
T ss_pred HhHHHHHHH-----HHhCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-------HH
Confidence 655555543 344543 2222344555778999999999999999999999999999999997544 55
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCC--HHHHHHHHHH-HHHH
Q 015340 333 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASILSFYMF-IWKL 396 (408)
Q Consensus 333 ~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~--~~~~~~f~~~-iw~l 396 (408)
...+..++..++..+|.....++ .|.++.++.+..+.+|+..+|.+| +++|.++|.. .|-+
T Consensus 218 ~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G 281 (294)
T PRK12873 218 VQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILG 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHH
Confidence 56666666666677787777766 344677777889999999999887 4788666553 4443
No 11
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.7e-34 Score=278.68 Aligned_cols=266 Identities=17% Similarity=0.163 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC--C
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y 178 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~--~ 178 (408)
.-+++++|+|++||++...+......|.++|..+.++ +. .+++..++.+++++++|++||++|+|+|++|+| +
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 3467889999999999998888788898888544333 21 245677889999999999999999999999985 8
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHH
Q 015340 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (408)
Q Consensus 179 RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~l 258 (408)
||+|+|++|++++..+...+.+.++.+++.+|+++..+++ +..++...||+ +||++.++++.+++.++..+..
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~ 151 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG 151 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence 9999999999999998766666666666778876665553 34555788995 6999999999988776655444
Q ss_pred HHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHH
Q 015340 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS 338 (408)
Q Consensus 259 g~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~ 338 (408)
|++. +.|+ .+.+.+++.+..++|+.+++++++++|+|||+|+|+||+|+++|++++ .++......
T Consensus 152 g~~a-----~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~------~~~~~~~~~ 216 (291)
T PRK12886 152 AWIA-----IRGT----IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGS------LWIARVFHL 216 (291)
T ss_pred HHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhH------HHHHHHHHH
Confidence 4332 3344 355666777778999999999999999999999999999999999998 666655555
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCH-HHHHHHH-HHHHHH
Q 015340 339 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASILSFY-MFIWKL 396 (408)
Q Consensus 339 ~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~-~~~~~f~-~~iw~l 396 (408)
+.+.+.+..+.....++ .|.++..+....+.++.+.++.+|+ +.|+++| ..+|.+
T Consensus 217 ~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~ 273 (291)
T PRK12886 217 LMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYIS 273 (291)
T ss_pred HHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHHH
Confidence 55555555555444454 3344555666666678888888884 5776644 444444
No 12
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=4e-34 Score=279.33 Aligned_cols=259 Identities=17% Similarity=0.174 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHccchhHHHHHH---HHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--
Q 015340 102 LKKFHALYRFMRAYACAGVIIA---TTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (408)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~---~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk-- 176 (408)
++++++|++++|++++.++.+. .+.|.++|.+..++ .. .+++.+++.+++++++|++||++|+|+|++++
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 3578999999999888766654 45677777543333 21 24556778889999999999999999999765
Q ss_pred CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (408)
Q Consensus 177 ~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~ 256 (408)
|+||+|||++|++++..++.++.++++.+++.+|+..+.++ +++.++.+.|++ .||++.++++.+++..|..+
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 48999999999999999999999999998888886665554 455566788974 69998889998887777555
Q ss_pred HHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHH
Q 015340 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSM 336 (408)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~l 336 (408)
.+++.. +.|. .+...+++.....+|+...+++++++|+|||+++|+||+|+++|+|++ .++.. +
T Consensus 150 ~~g~~a-----~~~~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~------~~~~~-~ 213 (282)
T PRK12848 150 PMAFAA-----VQGS----VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDK------LIIGL-L 213 (282)
T ss_pred HHHHHH-----HhCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccH------HHHHH-H
Confidence 444432 2333 355666777778999999999999999999999999999999999988 55543 3
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Q 015340 337 LSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM 391 (408)
Q Consensus 337 l~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~ 391 (408)
..+......+.+.....++ .|.++..+....+.+++..+|.+|+++|.++|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 265 (282)
T PRK12848 214 QLATLALLAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKAFL 265 (282)
T ss_pred HHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3333333344454444444 344567778888899999999999888866664
No 13
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.3e-34 Score=277.38 Aligned_cols=278 Identities=12% Similarity=0.146 Sum_probs=205.7
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHhcc------cc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 015340 103 KKFHALYRFMRAYACAGVIIATTSNSLLPV------QT---LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDK 173 (408)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~------~~---~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr 173 (408)
++++.|.++.|.++.+........|.++|. ++ .++ +..+++..++.+++++++|++||+.|+|+|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~ 76 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGG-----IKTISLGGSAFFCARTVGIIVNQIIDCAIDK 76 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCC-----HHHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Confidence 358899999998776666555567888885 22 222 2235678899999999999999999999999
Q ss_pred cCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHh
Q 015340 174 VNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251 (408)
Q Consensus 174 ~nk~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~ 251 (408)
+|+| +||+|+|++|+++++.+..++.++++.+++.+|+.++.++. +++++...||+ +||+++++++.+++.
T Consensus 77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~ 149 (300)
T PRK12876 77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLV 149 (300)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHH
Confidence 9985 99999999999999999988888888888889977776664 45555688985 799999999998876
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcccCcH----HHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCch
Q 015340 252 NGLLTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQ 327 (408)
Q Consensus 252 ~g~~~~lg~~~~~~~~v~g~~~~~~~~----~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~ 327 (408)
.+..+..++. ++.|++ .++ ..+++.....+|+.++|++|++||+|+|++.|+||+|+++|++++
T Consensus 150 ~~~~~l~~~~-----Av~~~~---~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a---- 217 (300)
T PRK12876 150 YYLAILMNFF-----AIIETP---LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKA---- 217 (300)
T ss_pred HHHHHHHHHH-----HHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhH----
Confidence 6544434433 234442 222 233445566778889999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HHHHHHccCCCHHHHHHHHHH---HHHHHHHHHh
Q 015340 328 KVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF--WLRVRAVDLSDNASILSFYMF---IWKLYYAEYL 402 (408)
Q Consensus 328 ~l~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l--~~~~~~vd~~~~~~~~~f~~~---iw~l~~~ey~ 402 (408)
.++......++...+++.|.....++ .++..+.++.+..+ .+|.+.+|.++++.|..||.. |--.+++.++
T Consensus 218 --~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~ 293 (300)
T PRK12876 218 --IRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMI 293 (300)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHH
Confidence 67777666666666666776666555 23444554333333 455577888889999998875 4445556666
Q ss_pred ccccCC
Q 015340 403 LIPFVR 408 (408)
Q Consensus 403 ~~p~~~ 408 (408)
..|+.|
T Consensus 294 ~~~~~~ 299 (300)
T PRK12876 294 GLFLLR 299 (300)
T ss_pred HHHccC
Confidence 655544
No 14
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-34 Score=279.90 Aligned_cols=271 Identities=23% Similarity=0.315 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHH---HHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 015340 100 VFLKKFHALYRFMRAYACAGVIIATT---SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (408)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~---~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk 176 (408)
..+++++.+.+++|+++++++.+.+. .|..++....++ +...++++++++++++++|++||+.|+|+||+|+
T Consensus 5 ~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~ 79 (289)
T COG0382 5 SLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINP 79 (289)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCC
Confidence 45567778888888888887776654 455555422222 2246778899999999999999999999999999
Q ss_pred C--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340 177 P--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (408)
Q Consensus 177 ~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~ 254 (408)
| +||+|||++|+++++.+.++++++++.+++.+|++.+.+. +++.++.++|+ ++||.+++++++++..+|.
T Consensus 80 rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~ 152 (289)
T COG0382 80 RTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYP------FLKRFTFLPQLVLGLAFGL 152 (289)
T ss_pred CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH------HhhcCCchHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999997665544 57788889995 4899999999999988876
Q ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHH
Q 015340 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV 334 (408)
Q Consensus 255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~ 334 (408)
.+..|+.. +.|. .+.+.++++++..+|+.+++++||++|+|+|++.|+||+|+.+|++++ .+++.
T Consensus 153 ~~~~g~~a-----~~~~----~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a------~~l~~ 217 (289)
T COG0382 153 GALAGAAA-----VGGS----LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKA------LALAL 217 (289)
T ss_pred HHHHHHHH-----HhCc----cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhH------HHHHH
Confidence 66555543 2332 255667788889999999999999999999999999999999999999 77777
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 015340 335 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAE 400 (408)
Q Consensus 335 ~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~iw~l~~~e 400 (408)
... ........++....... ..+..+..+.+..+.+|...+|.+|++.|+.++..-...-...
T Consensus 218 ~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (289)
T COG0382 218 LLL-LASALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLL 280 (289)
T ss_pred HHH-HHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHH
Confidence 655 44444444444333221 2445677788888999999999889999999887644433333
No 15
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-33 Score=275.22 Aligned_cols=267 Identities=17% Similarity=0.192 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHccchhHHH---HHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC-
Q 015340 101 FLKKFHALYRFMRAYACAGV---IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK- 176 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~---~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk- 176 (408)
.++++++|++++||+++.+. .++.+.|.++|.... ..++. ..++.+++.+++++++|++||++|+|.|++|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 34578999999999988764 466677888875432 12222 25667888899999999999999999999866
Q ss_pred -CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhH
Q 015340 177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (408)
Q Consensus 177 -~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~ 255 (408)
++||+|+|++|++++..++.++.++++.+++.+|+..+..+ +++.++.+.||+ .||++.+++++.++.++..
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~ 151 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMG 151 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence 48999999999999999999999999998888886665554 455666889985 6999888998887765543
Q ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS 335 (408)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ 335 (408)
+..++.. +.|. .+...+++.+..++|+.+++++++++|+|+|+|+|+||+|+++|++++ .+++..
T Consensus 152 ~l~~~~a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a------~~~~~~ 216 (285)
T PRK12847 152 ILMAFAA-----VQNQ----LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTR------KYILRL 216 (285)
T ss_pred HHHHHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccH------HHHHHH
Confidence 3333322 3343 355666777788999999999999999999999999999999999999 777665
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH-HHHHHH
Q 015340 336 MLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWKLY 397 (408)
Q Consensus 336 ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~-~iw~l~ 397 (408)
.....+.+. +.+...+..+ .++ ++.++....+.++...+|.+|+++|+++|. .++.++
T Consensus 217 ~~~~~~~~~-~~~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 275 (285)
T PRK12847 217 YIISLILWL-ILGIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVGL 275 (285)
T ss_pred HHHHHHHHH-HHHHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHH
Confidence 554444433 3344444332 233 244445668888888999888877765554 455443
No 16
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.6e-34 Score=275.80 Aligned_cols=265 Identities=18% Similarity=0.204 Sum_probs=191.3
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccc
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlas 183 (408)
++++|++++||++...+.++.+.|.+++.+..++ .. ..++.+++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 3789999999999999999999999988543221 11 145678888999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHH
Q 015340 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (408)
Q Consensus 184 G~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~ 263 (408)
|++|+++++.++.++.++++.+++.+|+..+... +++.++.+.||. |+||++.+++++++...|..+.+|..
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~-- 149 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA-- 149 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999998886555444 455566789984 68999999999887766654444432
Q ss_pred HHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHH
Q 015340 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGA 343 (408)
Q Consensus 264 ~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~ 343 (408)
..+.. .....+.+....++|+.+++++||++|+|||+++|+||+|+++|+|++ .+++.....+....
T Consensus 150 ----~~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t------~~~~~~~~~~~~~~ 216 (276)
T PRK12882 150 ----AVGTE---GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKA------LYVAAAFLLVAVAA 216 (276)
T ss_pred ----Hhccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHH------HHHHHHHHHHHHHH
Confidence 22321 122334445556678889999999999999999999999999999999 66655443333322
Q ss_pred HHHHHH-hcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH-HHHHHH
Q 015340 344 AVVVGA-SSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWKLY 397 (408)
Q Consensus 344 ~i~~g~-~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~-~iw~l~ 397 (408)
. ..++ ....++ .++..........+....+..|.+|++.|+++|. .+|-++
T Consensus 217 ~-~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~g~ 269 (276)
T PRK12882 217 S-PLPYLLSTFGL--WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMFLAL 269 (276)
T ss_pred H-HHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 2 2221 122233 2222222333444555667778888888866554 455544
No 17
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=1.9e-33 Score=279.38 Aligned_cols=255 Identities=19% Similarity=0.297 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL-ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~-~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~R 179 (408)
..+++|+|++++||+++. ..++.+.|.++|.+.. ++.....+ .+...++...+..+++|++||++|+|+|++|||.|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 445689999999999888 6677777777775422 22211111 12222334445667789999999999999999999
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340 180 PLASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (408)
Q Consensus 180 PlasG~is~~~a~~~~~~l~~l~l~la~~l~~-------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~ 252 (408)
|+++|++|+++++.+..++.++++.+++.++. +.+++..+++++++++|| .||+++||+++++...+++.+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~ 163 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSY 163 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHH
Confidence 99999999999999999999888887776542 223333346677889999 489999999988888887766
Q ss_pred hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL 332 (408)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i 332 (408)
+.....+. ...+|. .+...+++.+..++|+.+++++||++|+|||++.|+||+|+++|++++ .++
T Consensus 164 ~~~~~~~~-----~a~~g~----~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a------~~i 228 (331)
T PRK12392 164 GFITFLSA-----NALFSD----IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT------FLV 228 (331)
T ss_pred HHHHHHHH-----HHHhcC----CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhH------HHH
Confidence 64333222 223443 345555666678889999999999999999999999999999999999 787
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015340 333 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRA 377 (408)
Q Consensus 333 ~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~ 377 (408)
+.....+.....+..+......+. + ....++.+..+++|.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~q~~l 270 (331)
T PRK12392 229 SFIIIDLVFAVFAWLAWSWGFTVL--M-YFILVGLVLNIVIQIQL 270 (331)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHH--H-HHHHHHHHHHHHHHHHH
Confidence 776665666666666666665542 2 23444555666666654
No 18
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=274.61 Aligned_cols=259 Identities=19% Similarity=0.267 Sum_probs=195.3
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccc
Q 015340 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA 182 (408)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPla 182 (408)
+++++|++++||+++..+.++.+.|.++|.+..+ +. .+++.+++.+++++++|++||++|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 4789999999999999999999999988865332 11 24567788999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHH
Q 015340 183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262 (408)
Q Consensus 183 sG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~ 262 (408)
+|++|+++++.++.++.+++++++..+|+..+... +++.++++.||. ++||+++++++++++.+|.....++..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988886555444 456677899995 579999989999887777554444322
Q ss_pred HHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHH
Q 015340 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYG 342 (408)
Q Consensus 263 ~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~ 342 (408)
.+.. +...+++....++|+.+.++++|++|+|||+++|+||+|+++|+|++ .+++.....+.+.
T Consensus 150 ------~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~------~~~~~~~~~~~~~ 213 (279)
T PRK12884 150 ------VGEL----NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIA------GRIAAALFILAVL 213 (279)
T ss_pred ------hCCC----chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHH------HHHHHHHHHHHHH
Confidence 2322 22445555667788899999999999999999999999999999999 7777666666665
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH-HHccCCCHHHHHHHHHH
Q 015340 343 AAVVVGASSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSFYMF 392 (408)
Q Consensus 343 ~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~-~~vd~~~~~~~~~f~~~ 392 (408)
..++.+.....++ .|.....+....+.++. +..+.+|++.++.+...
T Consensus 214 ~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 261 (279)
T PRK12884 214 LSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKI 261 (279)
T ss_pred HHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4443333222233 23344445555555664 55666677776666433
No 19
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=2.2e-33 Score=273.92 Aligned_cols=259 Identities=17% Similarity=0.174 Sum_probs=191.2
Q ss_pred HHHHHHHHccchhHHHHHHH---HHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCC
Q 015340 105 FHALYRFMRAYACAGVIIAT---TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (408)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~---~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~R 179 (408)
+++|.|++|++++.++.+.. +.|..+|.......++. ..++..++..++++++|++||++|+|.|++|+ |+|
T Consensus 1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R 77 (281)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR 77 (281)
T ss_pred ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence 35789999988887765544 46777774311111121 14556678889999999999999999999765 489
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHH
Q 015340 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (408)
Q Consensus 180 PlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg 259 (408)
|+|+|++|++++..+..++.++++.+++.+|+....++ ++++++.+.||. .||++.++++..++.++..+..|
T Consensus 78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g 150 (281)
T TIGR01474 78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMG 150 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988886666555 456667899994 79999999998887666555555
Q ss_pred HHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHH
Q 015340 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSI 339 (408)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~ 339 (408)
++. +.|. .+...+++.....+|+.+++++|+++|+|+|+|+|+||+|+++|++++ ++...+..+
T Consensus 151 ~~a-----~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~-------~~~~~~~~~ 214 (281)
T TIGR01474 151 WAA-----VTGD----LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTK-------PWLGGLYAL 214 (281)
T ss_pred HHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhH-------HHHHHHHHH
Confidence 432 3443 355555566778899999999999999999999999999999998877 333333333
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340 340 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 392 (408)
Q Consensus 340 ~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~ 392 (408)
+.....+.+.....++ .|.++..+.+..+.++...+|.+|+++|+++|..
T Consensus 215 ~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 264 (281)
T TIGR01474 215 MILLLALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKA 264 (281)
T ss_pred HHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3333334444444444 3345666778888889888888888877776653
No 20
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=4.5e-33 Score=275.37 Aligned_cols=267 Identities=15% Similarity=0.098 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHH---ccchhHHHHHHHHHHHHhccccCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 015340 97 FLNVFLKKFHALYRFM---RAYACAGVIIATTSNSLLPVQTLA---DLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE 170 (408)
Q Consensus 97 ~~~~~~~~l~~~~~l~---Rp~~~~~~~l~~~~g~llA~~~~~---~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e 170 (408)
+.+..++++++|++++ ||+......++.+.|.++|.+... ..++. ..+++.++.+++++++|++||++|+|
T Consensus 22 ~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~ 98 (314)
T PRK12878 22 VDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRD 98 (314)
T ss_pred hhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344778999999999 666777778888889998865311 22322 25567889999999999999999999
Q ss_pred ccccCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHH
Q 015340 171 VDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCM 248 (408)
Q Consensus 171 ~Dr~nk~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l 248 (408)
+|++++| +||+|+|++|++++..+..++.++|+.+.+..|++.+.++ ++++++.+.|+. .||++.+++...
T Consensus 99 iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~ 171 (314)
T PRK12878 99 IDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFL 171 (314)
T ss_pred cccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHH
Confidence 9998764 8999999999999999999999999998888886655554 456666889984 799888888877
Q ss_pred HHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchh
Q 015340 249 VSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQK 328 (408)
Q Consensus 249 ~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~ 328 (408)
++..+..+..|++. +.|+ ++...+++++..++|+.+.+.+++++|+|+|+|+|+||+|+++|++++
T Consensus 172 Gl~~~~~~l~g~~a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~----- 237 (314)
T PRK12878 172 GLAFSWGALMGWAA-----HFGS----LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTK----- 237 (314)
T ss_pred HHHHHHHHHHHHHH-----HhCC----CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhH-----
Confidence 76555444445432 3344 355566667778899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340 329 VFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 392 (408)
Q Consensus 329 l~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~ 392 (408)
.++.... .+......+.+.....++ .+.++.......+.++...+|.+|++.|+++|..
T Consensus 238 -~~~~~~~-~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 296 (314)
T PRK12878 238 -TWLVLFY-GLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS 296 (314)
T ss_pred -HHHHHHH-HHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence 5655433 333333333443333444 2334555556678899999988888888777763
No 21
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.6e-33 Score=274.76 Aligned_cols=254 Identities=20% Similarity=0.252 Sum_probs=188.1
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccc
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlas 183 (408)
++++|++++||+++..+.++.+.|.+++.+...+ +. .+++++++.+++++++|++||++|+|+|++|+|+||+||
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKID--LK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcc--hH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 3688999999999999999999998888543222 21 255678889999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHH
Q 015340 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (408)
Q Consensus 184 G~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~ 263 (408)
|++|+++++.++.++.++++.+++.+|++.+..+ +++.++.+.||. ++||++.+++++++...|..+..|+..
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~- 149 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA- 149 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999988887666555 455666789984 489999999999988887665555432
Q ss_pred HHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHH
Q 015340 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGA 343 (408)
Q Consensus 264 ~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~ 343 (408)
+.+ ....+++....++|+.+++++||++|+|+|+++|+||+|+++|+|++ .+++.....+....
T Consensus 150 ----~~~------~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a------~~~~~~~~~~~~~~ 213 (279)
T PRK09573 150 ----VFN------VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKS------WYIAKILLILAIVL 213 (279)
T ss_pred ----Hcc------chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHH------HHHHHHHHHHHHHH
Confidence 222 12234455566788889999999999999999999999999999999 66655444333332
Q ss_pred HHHHHHhcC-cchHHHHHHHHHHHHHHHHHHHH-HHccCCCHHHHHHH
Q 015340 344 AVVVGASSP-FLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSF 389 (408)
Q Consensus 344 ~i~~g~~~~-~~~~~~~~~~~~~i~a~~l~~~~-~~vd~~~~~~~~~f 389 (408)
.. ...... .++ .|..+..+....+.++. +..+.+|++.|+..
T Consensus 214 ~~-~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (279)
T PRK09573 214 SP-LPYFLGIFGI---YYLIVVIICDILFIIAMLILLKNPSIEGASKA 257 (279)
T ss_pred HH-HHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence 22 121111 223 34445555555555553 34455566665544
No 22
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=5.8e-33 Score=279.54 Aligned_cols=224 Identities=20% Similarity=0.302 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCC
Q 015340 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY 178 (408)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~ 178 (408)
...+++++|++++||++|..+++++++|.... +.+ ++.+. ....++.++++..++++++|++|||+|+|+|++|+|+
T Consensus 80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~ 157 (375)
T PLN00012 80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY 157 (375)
T ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence 35678899999999999999999988888753 322 22211 1112356777888999999999999999999999999
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (408)
Q Consensus 179 RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~ 252 (408)
||+++|++|+++++....++.++++.+++.++. +......+++++++++|| .||+++||+++++++.++..+
T Consensus 158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~ 235 (375)
T PLN00012 158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYS--APPLKLKQNGWIGNYALGASY 235 (375)
T ss_pred CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhc--CCchhhhHhccHhHHHHHHHH
Confidence 999999999999999777777766666655421 222222345667789999 489999999999998877655
Q ss_pred hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL 332 (408)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i 332 (408)
+.++ ++.. ..++|. ++...+++.+..++|..+++++||++|+|+|++.|+||+||++|++++ .++
T Consensus 236 ~~lp---~~~g--~a~~g~----~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a------~~l 300 (375)
T PLN00012 236 ISLP---WWAG--QALFGT----LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETA------KWI 300 (375)
T ss_pred HHHH---HHHH--HHHcCC----CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHH------HHH
Confidence 4332 2211 123454 355566666677788899999999999999999999999999999999 777
Q ss_pred HHHHHHHHHH
Q 015340 333 SVSMLSIAYG 342 (408)
Q Consensus 333 ~~~ll~~~y~ 342 (408)
+..++.+.+.
T Consensus 301 ~~~~l~l~~l 310 (375)
T PLN00012 301 CVGSIDITQL 310 (375)
T ss_pred HHHHHHHHHH
Confidence 7655555543
No 23
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=8.7e-33 Score=273.66 Aligned_cols=227 Identities=21% Similarity=0.275 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~R 179 (408)
.++++++|++++||+++.+++++++.|.+.+. .. +.... .+..++..+++..++++++|++||++|+|+|++|||+|
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R 100 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-AF-GWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR 100 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence 34578899999999999999999887877653 21 22221 11113445677888999999999999999999999999
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHH
Q 015340 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (408)
Q Consensus 180 PlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg 259 (408)
|+++|++|+++++.+..++.++++++++.+|++.+.++ +++++++++|| .||+++||+++++++.+++.+|..+.++
T Consensus 101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988886554444 46677789999 4889999999999999887665433222
Q ss_pred HHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHH
Q 015340 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSI 339 (408)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~ 339 (408)
.+ ..+.+.. .+...++.....+++..+++++||++|+|+|+++|+||+|+++|++++ .+++..++.+
T Consensus 178 g~----~~~~~~~---~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a------~~l~~~l~~~ 244 (314)
T PRK07566 178 GA----AAFGAGL---PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNA------ARIACVVIDL 244 (314)
T ss_pred HH----HHhccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHH------HHHHHHHHHH
Confidence 11 1122221 345555555667778888999999999999999999999999999999 7887777777
Q ss_pred HHHHHH
Q 015340 340 AYGAAV 345 (408)
Q Consensus 340 ~y~~~i 345 (408)
+|.+.+
T Consensus 245 ~~~~~~ 250 (314)
T PRK07566 245 FQLAVI 250 (314)
T ss_pred HHHHHH
Confidence 776543
No 24
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=4.1e-33 Score=272.29 Aligned_cols=222 Identities=20% Similarity=0.211 Sum_probs=174.4
Q ss_pred HHHHHHHccchhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccccc
Q 015340 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG 184 (408)
Q Consensus 106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG 184 (408)
|+|++++||+++..++++++.|.+++.....+ +++. ..++.++++..+.++++|.+|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46889999999999999999999887322122 2221 12444677888999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHHH
Q 015340 185 EISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 264 (408)
Q Consensus 185 ~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~ 264 (408)
++|+++++.+..++..+++.+++.++.+......+++++.+++|| .||+|+||+++++++.+++.++.....+.+
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~--- 153 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGH--- 153 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHH---
Confidence 999999999999999999999888876653334456677789999 589999999999998887655433222211
Q ss_pred HHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHHH
Q 015340 265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAA 344 (408)
Q Consensus 265 ~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~~ 344 (408)
...+. .++..++.....++++.+++++||++|+|+|+++|+||+|+++|+|++ .+++..++.++|...
T Consensus 154 --~~~~~----~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a------~~l~~~l~~~~~~~~ 221 (283)
T TIGR01476 154 --AIFAP----LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRA------AIVAVTTINVFQAMV 221 (283)
T ss_pred --HHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHH------HHHHHHHHHHHHHHH
Confidence 12232 345555555667778888999999999999999999999999999999 888887777777655
Q ss_pred HH
Q 015340 345 VV 346 (408)
Q Consensus 345 i~ 346 (408)
+.
T Consensus 222 ~~ 223 (283)
T TIGR01476 222 IG 223 (283)
T ss_pred HH
Confidence 43
No 25
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=6.8e-32 Score=265.35 Aligned_cols=268 Identities=13% Similarity=0.062 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCC
Q 015340 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (408)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~R 179 (408)
++++++|++++||+++..+.++.++|.++|.+.. .++. ..++++++..++++++|++||++|+|.|++|+ |+|
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~--~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPGV--PPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 3569999999999999999999999999986432 2232 24567889999999999999999999999987 699
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHH
Q 015340 180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (408)
Q Consensus 180 PlasG~is~~~a~~~~~~l~~l~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~l 258 (408)
|+|+|++|++++..++.++.++++.+++. .|..+..+..+......+.||. ++||+++......++..+..+..
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~ 156 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTPQNIVIGGAAGAMPPLI 156 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCccchHHHHHHHHhHHHH
Confidence 99999999999999999999999888755 5655554443333334678985 58999965444443333333333
Q ss_pred HHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHH
Q 015340 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS 338 (408)
Q Consensus 259 g~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~ 338 (408)
|++. +.|. .+...+++.+..++|+.+.+..++++|+|||+++|+||+|+++|++++ .+++.....
T Consensus 157 g~~a-----~~g~----~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~------~~~~~~~~~ 221 (296)
T PRK04375 157 GWAA-----VTGS----LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVT------KRQILLYTV 221 (296)
T ss_pred HHHH-----hCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHH------HHHHHHHHH
Confidence 4332 2343 355566777788999999999999999999999999999999999988 554443322
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHHHHHHH
Q 015340 339 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYMFIWKL 396 (408)
Q Consensus 339 ~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~-~~f~~~iw~l 396 (408)
+.-...++.......++ .++..+....+..+.++.+.++.+|++.| +.|+...|.+
T Consensus 222 ~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~ 278 (296)
T PRK04375 222 LLVAVSLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL 278 (296)
T ss_pred HHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 22222222111112333 22222344556666677778877777766 4555555554
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=2e-31 Score=259.97 Aligned_cols=267 Identities=14% Similarity=0.130 Sum_probs=187.7
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCCcc
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL 181 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~RPl 181 (408)
++++|+|++||++.....++.+.|.++|.+.. .++. .+++.+++.+++++++|++||++|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 46899999999998888899899998885432 2232 24567788899999999999999999999987 58999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHH
Q 015340 182 ASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV 260 (408)
Q Consensus 182 asG~is~~~a~~~~~~l~~l~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~ 260 (408)
|+|++|++++..++.++.++++.+++. +|+.+.....+..++..+.||. ++||+++.+.+..++..+ .+.++.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~-~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGGFAGN-AAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHHHHHH-HHHHHH
Confidence 999999999999999999999988877 7755433333455567788995 489999876665554433 333333
Q ss_pred HHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHH
Q 015340 261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIA 340 (408)
Q Consensus 261 ~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~ 340 (408)
+. ...|. .+...+++.+..++|+.+.....+++|+|||+++|+||+|+++|+|++ .++......+.
T Consensus 150 ~~----a~~g~----~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a------~~~~~~~~~~~ 215 (279)
T PRK12869 150 YA----SGTGS----LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTS------VRAISISNALM 215 (279)
T ss_pred HH----HHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHH------HHHHHHHHHHH
Confidence 32 22343 355666666778889988877778899999999999999999999988 55544433333
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHHccCCCHHHH-HHHHHHHHHHHHH
Q 015340 341 YGAAVVVGASSPFLANKLITIIGHG-ILASIFWLRVRAVDLSDNASI-LSFYMFIWKLYYA 399 (408)
Q Consensus 341 y~~~i~~g~~~~~~~~~~~~~~~~~-i~a~~l~~~~~~vd~~~~~~~-~~f~~~iw~l~~~ 399 (408)
.......+. ...++ .|..+.. ..+..+..+.+..+.+|++.| +.|..++|++...
T Consensus 216 ~~~~~~~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~~~ 272 (279)
T PRK12869 216 IPYILLLYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLALF 272 (279)
T ss_pred HHHHHHHHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Confidence 222222222 23344 2333333 334455565566665566555 5566778887543
No 27
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=2.4e-31 Score=262.56 Aligned_cols=228 Identities=21% Similarity=0.301 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCC
Q 015340 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY 178 (408)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~ 178 (408)
...+++++|++++||++|..++++++.|...+ +.+ ++... ....++..+++..++++++|.+|||+|+|.|+.|+|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~ 88 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY 88 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence 34566889999999999999999998888764 222 12111 0111344557778999999999999999999999999
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (408)
Q Consensus 179 RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~ 252 (408)
||+++|++|+++++.++.++..+++.+++.+.. +..+...+++++++++|| .||+++||+++++++.++..+
T Consensus 89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~ 166 (306)
T TIGR02056 89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYS--APPLKLKQNGWLGNFALGASY 166 (306)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHc--CChhhhhhcccHHHHHHHHHH
Confidence 999999999999999998888888877765531 222333356677799999 489999999988988877655
Q ss_pred hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL 332 (408)
Q Consensus 253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i 332 (408)
+..+..+.+ .++|. ++...++..+..++|+.++++.||++|+|+|++.|+||+|+++|+|++ .++
T Consensus 167 ~~~~~~~~~-----a~~g~----~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a------~~~ 231 (306)
T TIGR02056 167 IALPWWAGH-----ALFGE----LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETA------AWI 231 (306)
T ss_pred HHHHHHHHH-----HHhCC----CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHH------HHH
Confidence 533322211 23343 355555666677789999999999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHH
Q 015340 333 SVSMLSIAYGAAVV 346 (408)
Q Consensus 333 ~~~ll~~~y~~~i~ 346 (408)
+..++..+|...+.
T Consensus 232 ~~~l~~~~~~~~~~ 245 (306)
T TIGR02056 232 CVGAIDIFQGLIAA 245 (306)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777776764443
No 28
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=1.4e-30 Score=254.19 Aligned_cols=267 Identities=17% Similarity=0.123 Sum_probs=188.4
Q ss_pred HHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCCcccc
Q 015340 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLAS 183 (408)
Q Consensus 106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~RPlas 183 (408)
|+|+|++||+++..+.++++.|.++|.... +.++. .+++++++.+++++++|++||++|+|.|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 468999999999999999999999985432 22332 24567889999999999999999999999976 6999999
Q ss_pred cccChHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHH-HHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHH
Q 015340 184 GEISMGTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIF-VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (408)
Q Consensus 184 G~is~~~a~~~~~~l~~l~l~l-a~~l~~~~~~~~l~~~~~-l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~ 261 (408)
|++|++++..++.++.++|+.+ ...+|+....++. ++.+ ..++||. .+||+++.+++..++. |....++.+
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~-g~~~~l~g~ 149 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNTVIGGFA-GAVPPLIGW 149 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhHHHHHHH-HHHHHHHHH
Confidence 9999999999999999998884 4457755554443 3443 4788994 3799988877766544 333333322
Q ss_pred HHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
. ...|. .+...+++.....+|+...+...+++|+|||+++|+||+|+++|+|++ .++......+..
T Consensus 150 ~----a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a------~~~~~~~~~~~~ 215 (280)
T TIGR01473 150 A----AVTGS----ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERIT------KRQIALYTAALL 215 (280)
T ss_pred H----HhcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHH------HHHHHHHHHHHH
Confidence 2 12343 355566666778889988877888999999999999999999999988 555443332222
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCC-CHH-HHHHHHHHHHHHHHH
Q 015340 342 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLS-DNA-SILSFYMFIWKLYYA 399 (408)
Q Consensus 342 ~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~-~~~-~~~~f~~~iw~l~~~ 399 (408)
....+.+.....++ .++..+..+.+..+.++.+..|.+ |++ ..+.|+...+.+...
T Consensus 216 ~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~ 273 (280)
T TIGR01473 216 PVSLLLAFLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALL 273 (280)
T ss_pred HHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 22222233333444 233345556677777888777766 555 446666667776543
No 29
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=1.2e-30 Score=254.07 Aligned_cols=198 Identities=25% Similarity=0.337 Sum_probs=157.2
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccc
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlas 183 (408)
++++|++++||+++..+.++.+.|.+++.+..++ +. ..+..+++.++.++++|++||++|+|+|++|||+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3678999999999999999988899887543332 11 134566788888999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHH
Q 015340 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (408)
Q Consensus 184 G~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~ 263 (408)
|++|++++..+..++.++|+.+++.+|++.+.+. +.+.++++.|+. ++||.+.++++.++...|..+..|+..
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a- 149 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA- 149 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999988886666554 455667899996 578988889999888777554444321
Q ss_pred HHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccc
Q 015340 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERL 323 (408)
Q Consensus 264 ~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a 323 (408)
+ +. .+...++ ....++++.++++.||++|+|+|+++|+||+|+++|+|++
T Consensus 150 ----~-~~----~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a 199 (277)
T PRK12883 150 ----V-GR----IGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRA 199 (277)
T ss_pred ----h-cc----ccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHH
Confidence 1 32 2333222 2335556678889999999999999999999999999998
No 30
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=3.2e-30 Score=253.42 Aligned_cols=267 Identities=14% Similarity=0.159 Sum_probs=191.7
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC-----CC
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----PY 178 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk-----~~ 178 (408)
+++.|++++||+++..+..+.+.|.++|.....++++. ..++++++..++++++|.+|||+|.+.|+.|+ |+
T Consensus 3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~ 79 (296)
T PRK05951 3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ 79 (296)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence 68899999999999999999999998886543455543 35677889999999999999999965554444 78
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340 179 LPLASGEISMGTGIAITLASALMSLAYAV----MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (408)
Q Consensus 179 RPlasG~is~~~a~~~~~~l~~l~l~la~----~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~ 254 (408)
||+++|++|+++++....++..+++.++. ..+ +..+...+++++.++.|| .||+++|+++ +|++..++.+|.
T Consensus 80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~-~~~l~l~~~~~~~~~~Yt--~~P~~lky~g-lGe~~v~~~~g~ 155 (296)
T PRK05951 80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRG-IGAVTLALLGVFLWTCYM--GPPFFLKYRW-LGEHLVFYAWSH 155 (296)
T ss_pred CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHc--CCCcccCCCC-chHHHHHHHHHH
Confidence 99999999999999988887766654433 235 333333457788899999 5899999775 588888887886
Q ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHH
Q 015340 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV 334 (408)
Q Consensus 255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~ 334 (408)
.+.+|.+.. .+.. ++...+.......+++.....+||++|+|+|++.|+||+|+++|+|++ ++..
T Consensus 156 ~~vlg~~~~-----~~~~---~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-------~~~~ 220 (296)
T PRK05951 156 MLVMGLIYV-----WLGN---LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-------ALYI 220 (296)
T ss_pred HHHHHHHHH-----HhCc---ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-------HHHH
Confidence 666666542 2221 344555555566777788899999999999999999999999999998 5554
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340 335 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 392 (408)
Q Consensus 335 ~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~ 392 (408)
.....+|...+........++..+.+.++.......+.++.+..|.++...+.+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 221 FALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence 5566677655443332212222233444554455555666666676666666666655
No 31
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.98 E-value=5.3e-30 Score=248.73 Aligned_cols=266 Identities=18% Similarity=0.197 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCc
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 180 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RP 180 (408)
....++.+++++||..|+.+..++.+|.+.+.+. .|..+.. +++.+......+.+.|.+||++|+|+|++|+|+||
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 3456778899999999999999999999777542 2321222 33444555667789999999999999999999999
Q ss_pred ccccccChHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340 181 LASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (408)
Q Consensus 181 lasG~is~~~a~~~~~~l~~l----~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~ 256 (408)
+++|++|++++..+..++... ++.+++.+|++.+.+. +++.++.++|| .||+|+|++|++++++.. ..|...
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS--~pPlRlK~rp~l~~l~~~-~~g~p~ 159 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYS--LPPLRFKARPFLDGLSNA-AYALPL 159 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHc--cCccchhcCcchhHHHHH-HHHHHH
Confidence 999999999998865444433 5566777776555443 56778899999 599999999999988863 334322
Q ss_pred HHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHH
Q 015340 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSM 336 (408)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~l 336 (408)
..+ ..+.|.. ..+. ......+|..+++++++++|+|||++.|+||+|+++|+|++ .+++..+
T Consensus 160 ~~~------~~~~g~~----~~~~--~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a------~~~a~~~ 221 (292)
T PRK13595 160 ALP------ALALGAP----VPWP--PLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGT------ALYALAW 221 (292)
T ss_pred HHH------HHHcCCc----chHH--HHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhH------HHHHHHH
Confidence 211 1234432 2222 23456788899999999999999999999999999999999 8888765
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHh
Q 015340 337 LSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYL 402 (408)
Q Consensus 337 l~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~iw~l~~~ey~ 402 (408)
.+++-.++... ....+. ...+...+.+.-++ .|.+..+.-+.|-.|||--+...++
T Consensus 222 ~~~a~~~~~~~---~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~ 277 (292)
T PRK13595 222 FLLAGALLWPV---SRLTAL--ALWLICGGMALALW-----RRPTPETAHRLYPLSIVTPWIVGTV 277 (292)
T ss_pred HHHHHHHHHHh---cchHHH--HHHHHHHHHHHHHh-----cCCCHHHHhccchHHHHHhHHHHHH
Confidence 54443322221 111221 11222233332222 5766666777777888876665543
No 32
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=1.9e-29 Score=248.57 Aligned_cols=204 Identities=16% Similarity=0.218 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CC
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY 178 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~ 178 (408)
.+.++++|++++||+++..+.++.+.|.+++.+. +.++. ..++++++.+++++++|++||++|+|+|++++ ++
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 4456889999999999999999999999888433 23332 14456778899999999999999999999764 48
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHH
Q 015340 179 LPLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (408)
Q Consensus 179 RPlasG~is~~~a~~~~~~l~~l~l~la~-~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~ 257 (408)
||+|||++|++++..++.++.++|+.++. ..|.....+..+..+...+.||. ++||+++.+++..++..+..+.
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l 158 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV 158 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence 99999999999999999999999988654 45755444443334445678984 4899999999988776665555
Q ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccc
Q 015340 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERL 323 (408)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a 323 (408)
.|+.. +.|. .+...+++....++|+.+.+...+++|.|||+++|+||+|+++|++++
T Consensus 159 ~G~~a-----~~g~----~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t 215 (306)
T PRK13362 159 VGYCA-----VTGQ----FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKT 215 (306)
T ss_pred HHHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHH
Confidence 55543 3343 356667778889999999999999999999999999999999999988
No 33
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=4.1e-29 Score=245.16 Aligned_cols=230 Identities=17% Similarity=0.188 Sum_probs=176.3
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccc--ccccc--CCCCC
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKV--NKPYL 179 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~--e~Dr~--nk~~R 179 (408)
.+++|++++||+++..+.++++.|.++|... .++++. ..++++++..++++++|.+|||+|+ +.|+. ++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3678999999999999999999999888532 234432 2566788999999999999999999 46754 67899
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhH
Q 015340 180 PLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (408)
Q Consensus 180 PlasG~is~~~a~~~~~~l~~l~l~la~~----l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~ 255 (408)
|+++|++|++++..++.++.++++.++.. .++ ...+..+++++++++|| .||.++|+++ ++++..++.+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Ys--~~p~~~~~~g-lge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW-WLLLLGLLCIAAAILYT--GGPKPYGYTG-LGELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhc--CCCCccCCCC-cHHHHHHHHHHHH
Confidence 99999999999998887777766555543 353 33333356677889999 4888888876 4888888777765
Q ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS 335 (408)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ 335 (408)
...+.+.. ..|. .+.+.++..+..++|+.+++++||++|+|+|+++|+||+|+++|+|++ .+++..
T Consensus 154 ~~~~~~~~----~~~~----~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a------~~~~~~ 219 (293)
T PRK06080 154 IVLGTYYL----QAGT----VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNA------RRLHAA 219 (293)
T ss_pred HHHHHHHH----hcCC----CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhH------HHHHHH
Confidence 55544321 1122 355666667778889999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHhcCcch
Q 015340 336 MLSIAYGAAVVVGASSPFLA 355 (408)
Q Consensus 336 ll~~~y~~~i~~g~~~~~~~ 355 (408)
+..++|...+........++
T Consensus 220 l~~~~~~~~~~~~~~~~~~~ 239 (293)
T PRK06080 220 LLALAYLCIVLLALLGLASP 239 (293)
T ss_pred HHHHHHHHHHHHHHHhhhhH
Confidence 99999987666544433333
No 34
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=5.8e-31 Score=246.61 Aligned_cols=270 Identities=17% Similarity=0.129 Sum_probs=205.1
Q ss_pred hhHHHHHHHHHHHHHHHHccchhHHHHHHHH---HHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 015340 95 NSFLNVFLKKFHALYRFMRAYACAGVIIATT---SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV 171 (408)
Q Consensus 95 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~---~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~ 171 (408)
++..+..+.++++|.|++|.+.++++.+.+. ...++|... ...+.+ .-+.+.-++.++|++++|++||+.|+|+
T Consensus 54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdl 130 (353)
T KOG1381|consen 54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPSI-KMLALFGVGALLMRGAGCTINDLWDKDL 130 (353)
T ss_pred hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccchh-HHHHHhcccHHHhccCCceehhhhhhhh
Confidence 3445556667999999999999999998774 455555421 111221 1122344678899999999999999999
Q ss_pred cccCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHH
Q 015340 172 DKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249 (408)
Q Consensus 172 Dr~nk~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~ 249 (408)
|+..+| .||++||++|+++|+.+..+.+.+|+.+...+|+....+. ..++.+.+.|+. +||.++++++.++
T Consensus 131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLg 203 (353)
T KOG1381|consen 131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLG 203 (353)
T ss_pred hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHh
Confidence 998665 8999999999999999999999999999999996665443 567777788996 7999999999886
Q ss_pred HhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhH
Q 015340 250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKV 329 (408)
Q Consensus 250 ~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l 329 (408)
. .+++|... ++.++-|.. .+...+.+++-..+|++.+|++|++||.++|.+.|+|+.+.++|+++.
T Consensus 204 l----tfnwGAll-Gw~A~~g~~---~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK------ 269 (353)
T KOG1381|consen 204 L----TFNWGALL-GWCALKGSL---SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTK------ 269 (353)
T ss_pred h----hcchhhhh-cchhhcCcc---ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCc------
Confidence 4 33344332 233344543 222334567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340 330 FRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 392 (408)
Q Consensus 330 ~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~ 392 (408)
.|++.. -......+..+|+.+...|. +| .+....+..+..|..++|++|+++|..+|..
T Consensus 270 ~wl~gf-~a~~ia~La~aG~~s~q~~p--yy-~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~s 328 (353)
T KOG1381|consen 270 PWLSGF-GAAQIASLAAAGIASDQTWP--YY-AALGAVAARLGSQIYKVDIDNPSDCWKKFKS 328 (353)
T ss_pred hHHhhh-hHHHHHHHHHhhhccCCCch--HH-HHHHHHHHHHHhheeeeecCChHHHHHHHHh
Confidence 777552 22223355567888888772 33 4577889999999999999999999888864
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.5e-27 Score=234.27 Aligned_cols=260 Identities=13% Similarity=0.114 Sum_probs=170.5
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC-------
Q 015340 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN------- 175 (408)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~n------- 175 (408)
+++++|++++||+.......+++.|.++|......+++.. +++.+++..++.+++|++||+.|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4688999999999887777777778877731111233321 232344455556778999999999999864
Q ss_pred --C--CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhhccCCcCccccccccc--hhHH
Q 015340 176 --K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGNSF--LAAF 246 (408)
Q Consensus 176 --k--~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~---~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~--l~~l 246 (408)
| ++||+++|++|+++++.+..++.++|+.++..++.. ..+...+.+.++++.|+. .||... ...+
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p~~~l 153 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYPVAQL 153 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccccccHHHH
Confidence 3 489999999999999999999999998887765532 122222344566777884 234311 1222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCc
Q 015340 247 CMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFP 326 (408)
Q Consensus 247 ~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~ 326 (408)
..++..+.++..+ +. ..|. .+...++...+.++|+.+++++||++|+|||++.|+||+|+++|++++
T Consensus 154 ~G~~~~~~~~~~g-~~-----~~g~----~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t--- 220 (297)
T PRK12871 154 LGRTDFTLFPAAG-YL-----CYGQ----PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGT--- 220 (297)
T ss_pred HHHHHHHHHHHHH-HH-----HhCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHH---
Confidence 2222223222222 21 2343 355556666778899999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Q 015340 327 QKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM 391 (408)
Q Consensus 327 ~~l~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~ 391 (408)
.++...+..+..... ++.....++ ..+....++.+..+.+|.+..+.+|++.|-+-|.
T Consensus 221 ---~~~i~~~~~l~~l~~--~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 278 (297)
T PRK12871 221 ---MYWVTGFTALHFLAA--IFFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILP 278 (297)
T ss_pred ---HHHHHHHHHHHHHHH--HHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 544443333333222 232333333 1222334566778889999999999999966554
No 36
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=1.7e-27 Score=235.97 Aligned_cols=223 Identities=13% Similarity=0.055 Sum_probs=172.6
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC----CCCc
Q 015340 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYLP 180 (408)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk----~~RP 180 (408)
++.|++++||++...++++++.|..+|.....++++. ..+++++++++++.++|.+|||+|.+.|..++ +.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 6789999999999999999999998886433455543 25677888899999999999999988665554 6899
Q ss_pred ccccccChHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340 181 LASGEISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (408)
Q Consensus 181 lasG~is~~~a~~~~~~l~~l~l~----la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~ 256 (408)
+++|.+|+++++..+..+.+++.. +.+..| |..+...+++++.+++|| .||+++||++ +|++..++.+|..+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g-~~~l~igl~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTS-WLLLVIGLICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999988777777666 555566 445544567888899999 5899999999 68888888888666
Q ss_pred HHHHHHHHHHHHhcCCcccCcHHHH--------------------HHHHHHHHHHHHHHHHhhccChhhhHhcCCcccce
Q 015340 257 QFPVYVHIQKYVLGRPLEIFTRPLM--------------------FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSV 316 (408)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~i--------------------~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv 316 (408)
..+.+.... +. ++...+ +..+...+.+...+.+||++|+|+|+++|+||+|+
T Consensus 156 v~g~~yv~t----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v 227 (317)
T PRK13387 156 FLLAVYINT----NT----ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY 227 (317)
T ss_pred HHHHHHHhc----CC----CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee
Confidence 555543211 11 111111 13344556667789999999999999999999999
Q ss_pred eeccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 015340 317 MLGKERLFFPQKVFRLSVSMLSIAYGAAVVVG 348 (408)
Q Consensus 317 ~lG~k~a~~~~~l~~i~~~ll~~~y~~~i~~g 348 (408)
++|+|++ .+++..+..++|...+...
T Consensus 228 ~lG~~~a------~~l~~~l~~~a~l~~~~~v 253 (317)
T PRK13387 228 YIGREKG------VVLFAILFYASYLAIAVIV 253 (317)
T ss_pred eEcHHhH------HHHHHHHHHHHHHHHHHHH
Confidence 9999999 8999999999998665543
No 37
>PRK08238 hypothetical protein; Validated
Probab=99.95 E-value=8.7e-27 Score=242.09 Aligned_cols=221 Identities=18% Similarity=0.240 Sum_probs=171.7
Q ss_pred ccc-cCCceEecCCccccccccCCCCCCcccchhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHH
Q 015340 64 SSR-NCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAY 142 (408)
Q Consensus 64 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~ 142 (408)
.|+ ++++++||++++.++.+++.+ .+...+++.+.++++|++++|||||.+|++.++ +.+++ +.+.+ +..
T Consensus 154 ~~~~A~~av~Vn~~~~l~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~--~~~ 224 (479)
T PRK08238 154 VWAAARRAIVVGASPGVARAARALG-----PVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGD--LQA 224 (479)
T ss_pred HHHhCCCeEEECCCHHHHHHHHHcC-----CcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCC--hHH
Confidence 799 999999999998777776444 566778888889999999999999999999866 44444 44433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccC--CCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 015340 143 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 220 (408)
Q Consensus 143 l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~n--k~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~ 220 (408)
+...++++++++++++++|++||++|+|+||+| ||+||+|||++|+++|+.++.+++++|+++++.+|+ .....+++
T Consensus 225 ~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~-~~~~~~~~ 303 (479)
T PRK08238 225 LLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP-AFLLVLLA 303 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 334677888999999999999999999999997 679999999999999999999999999999999885 44455568
Q ss_pred HHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhc
Q 015340 221 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL 300 (408)
Q Consensus 221 ~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di 300 (408)
+++++++||+ ++||.++++++++++.++.-+..|+. ..+ .+...|++. +..++.....+.|..
T Consensus 304 ~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~------a~~-----~~~s~wll~-~~~~~~l~la~~KR~ 366 (479)
T PRK08238 304 YLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAA------AIG-----VALSFWLLA-FSMFFFLSLALVKRY 366 (479)
T ss_pred HHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHH------Hhc-----cCHHHHHHH-HHHHHHHHHHHHHhH
Confidence 8888999996 58999999999998765543333332 122 233334332 233334556788999
Q ss_pred cChhhhHhcCC
Q 015340 301 HDVDGDKKFGI 311 (408)
Q Consensus 301 ~DiegD~k~Gi 311 (408)
.|.++++..|.
T Consensus 367 ~El~~~~~~~~ 377 (479)
T PRK08238 367 TELRRALQRGK 377 (479)
T ss_pred HHHHHHHhcCC
Confidence 99999988886
No 38
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=4.5e-26 Score=221.75 Aligned_cols=218 Identities=20% Similarity=0.177 Sum_probs=154.3
Q ss_pred HHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccCCCCCcccc
Q 015340 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVP-AVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (408)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va-~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlas 183 (408)
+|.+++++||.+|+.+.+++..|.++|. +.++ +. +++..++ ....+.+.|.+|||+|.|.|+.|+|.+.. .
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~-~~~~--~~----~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~ 72 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAG-GEID--WL----FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E 72 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHC-CCCC--hH----HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence 3678999999999999999998999983 3322 22 2233333 23333444677999999999999775443 4
Q ss_pred cccChHHHHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHH
Q 015340 184 GEISMGTGIAITLASAL-----MSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (408)
Q Consensus 184 G~is~~~a~~~~~~l~~-----l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~l 258 (408)
|.+++++.......... .++.+....+ +.++....++++.++.|| .||.|+|++++.|+++.+..+......
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~ 149 (282)
T PRK13105 73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGS-WASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALY 149 (282)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHH
Confidence 88999987443333322 2223333334 444444467788899999 489999999999987655433212223
Q ss_pred HHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHH
Q 015340 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS 338 (408)
Q Consensus 259 g~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~ 338 (408)
|.+ .+ |+. .+...++....+.+|+.+++++||+||+|+|++.|+||+|+++|+|++ .+++..++.
T Consensus 150 G~~-----~~-~~~---~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a------~~~~~~l~~ 214 (282)
T PRK13105 150 GLV-----LA-GAP---FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRT------VRLAVGLYA 214 (282)
T ss_pred HHH-----Hh-hcc---ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHH------HHHHHHHHH
Confidence 322 22 332 345556666778889999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHH
Q 015340 339 IAYGAAVVVG 348 (408)
Q Consensus 339 ~~y~~~i~~g 348 (408)
+++.+.+..+
T Consensus 215 ~a~~~~~~~~ 224 (282)
T PRK13105 215 AAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHH
Confidence 8888776444
No 39
>PLN02922 prenyltransferase
Probab=99.95 E-value=2.1e-25 Score=220.63 Aligned_cols=233 Identities=18% Similarity=0.210 Sum_probs=172.2
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCCc
Q 015340 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLP 180 (408)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e--~Dr~nk~~RP 180 (408)
++++.|++++||++...++.|++.|.++|.....++++. ..+++++++++.+.++|.+|||+|.+ .|+.++..+.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 467889999999999999999999999986544456653 35678899999999999999999986 5764322212
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340 181 LASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (408)
Q Consensus 181 lasG~is~~~a~~~~~~l~~l~l~la~~l----~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~ 256 (408)
-..| |+++....+..++++++...+.+ +.|.+++..+++++.+++|| .||+++|++++ |++..++.+|.++
T Consensus 90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~ 164 (315)
T PLN02922 90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLA 164 (315)
T ss_pred Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHH
Confidence 2234 89998887777666655322221 22555555568888999999 58999999986 7777788888777
Q ss_pred HHHHHHHHHHHHhcCC-cc--cCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHH
Q 015340 257 QFPVYVHIQKYVLGRP-LE--IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLS 333 (408)
Q Consensus 257 ~lg~~~~~~~~v~g~~-~~--~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~ 333 (408)
..+.|.... ...+.. .. .++...++..+.+.+++.+++.+||++|+|+|+++|+||+|+++|+|++ .+++
T Consensus 165 v~g~y~~~~-~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a------~~l~ 237 (315)
T PLN02922 165 TTAFYLALA-SGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKG------SRVV 237 (315)
T ss_pred HHHHHHHhc-ccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHH------HHHH
Confidence 666655311 000110 00 1244455566678888889999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015340 334 VSMLSIAYGAAVVVGAS 350 (408)
Q Consensus 334 ~~ll~~~y~~~i~~g~~ 350 (408)
..+...+|...+.....
T Consensus 238 ~~l~~~~y~~~i~~v~~ 254 (315)
T PLN02922 238 RWAVLLLYSLLAALGLL 254 (315)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88889999877655444
No 40
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.95 E-value=4.7e-25 Score=216.98 Aligned_cols=227 Identities=15% Similarity=0.101 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCC
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPY 178 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e--~Dr~nk~~ 178 (408)
.+++++.|++.+||+++..++.+++.|.++|.....++++. ..++++++..+++.++|.+|||+|.+ .|+. ++.
T Consensus 8 ~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~ 83 (304)
T PRK07419 8 SPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH 83 (304)
T ss_pred CccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc
Confidence 34568889999999999999999999999986543456653 35678889999999999999999987 6774 222
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340 179 LPLASGEISMGTGIAITLASALMSLAY----AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (408)
Q Consensus 179 RPlasG~is~~~a~~~~~~l~~l~l~l----a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~ 254 (408)
...++..++++....+.+++.+++.+ .+..| |+++...+++++.+++|| .||+++|++++ |++..++.+|.
T Consensus 84 -~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~ 158 (304)
T PRK07419 84 -SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGP 158 (304)
T ss_pred -CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHH
Confidence 23345557888887776666655544 34445 555555567888899999 58999999985 88888888887
Q ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHH
Q 015340 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV 334 (408)
Q Consensus 255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~ 334 (408)
.+..+.+.. ... .++...++..+...+.+..+..+||++|+|+|+++|+||+|+++|+|++ .+++.
T Consensus 159 l~v~g~~yv-----~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a------~~ly~ 224 (304)
T PRK07419 159 LAVAAALYS-----QTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRG------AQLLP 224 (304)
T ss_pred HHHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhH------HHHHH
Confidence 777666542 222 2455566666667778888999999999999999999999999999999 88988
Q ss_pred HHHHHHHHHHHHHHHh
Q 015340 335 SMLSIAYGAAVVVGAS 350 (408)
Q Consensus 335 ~ll~~~y~~~i~~g~~ 350 (408)
.+...+|...+.....
T Consensus 225 ~l~~~ay~~~i~~v~~ 240 (304)
T PRK07419 225 WIVGLIYALELLPVLL 240 (304)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999877655443
No 41
>PLN02776 prenyltransferase
Probab=99.95 E-value=3e-25 Score=220.04 Aligned_cols=259 Identities=15% Similarity=0.009 Sum_probs=180.8
Q ss_pred HHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC--CCcccccccCh
Q 015340 111 FMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISM 188 (408)
Q Consensus 111 l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~--~RPlasG~is~ 188 (408)
++||.....+++..+.|.++|.+...+ +. .+++..++..++++++|++||++|+|+|++|+| +||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAID--LP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 467888888888888999998543333 21 255677899999999999999999999999774 99999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh-HHHHHHHHHHHH
Q 015340 189 GTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL-LTQFPVYVHIQK 266 (408)
Q Consensus 189 ~~a~~~~~~l~~l~l~l-a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~-~~~lg~~~~~~~ 266 (408)
++++.+++++.++|+.+ ++.+|..+..++.+..++....||. +||++.+. ..+|...|. .+.+||.
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~----- 143 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWA----- 143 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHHH-----
Confidence 99999999999988854 5667866665554333444568984 79999875 466666663 4444443
Q ss_pred HHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeec--cccccCchhHHHHHHHHHHHHHHHH
Q 015340 267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG--KERLFFPQKVFRLSVSMLSIAYGAA 344 (408)
Q Consensus 267 ~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG--~k~a~~~~~l~~i~~~ll~~~y~~~ 344 (408)
++.|. ++...+++...+++|+........+.|.|||+++|++++|+.-+ .+.+ ..+....+.+.-..+
T Consensus 144 Avtg~----~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta------~~i~~~~~~l~~~~l 213 (341)
T PLN02776 144 AASGQ----LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTA------LVALRNCLYLAPLGF 213 (341)
T ss_pred HHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHH------HHHHHHHHHHHHHHH
Confidence 34454 46677788888999999877778889999999999999999763 4444 333332222222222
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHH
Q 015340 345 VVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASILSFYMFIWKLYYA 399 (408)
Q Consensus 345 i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~-~~~~~f~~~iw~l~~~ 399 (408)
+..+... .++ .++..+.++.+..+.+.++..+.+|+ ...+.|+.+++++...
T Consensus 214 l~~~~g~-~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~~l 266 (341)
T PLN02776 214 LAYDWGV-TSS--PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLPAF 266 (341)
T ss_pred HHHHHHh-hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 2211111 122 24455566666677777777755554 4567788888887654
No 42
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=5e-26 Score=217.35 Aligned_cols=186 Identities=26% Similarity=0.412 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--CCCCCcccccccChHHHHHHHHH
Q 015340 120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLA 197 (408)
Q Consensus 120 ~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~--nk~~RPlasG~is~~~a~~~~~~ 197 (408)
.+.+++.|...+.+.. .++. .....++++++++.++|.+||+.|+|+|+. |||+||+++|+++.+++...+.+
T Consensus 4 ~~~~~l~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASGGP--FNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHcCC--CCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 4455555644443322 2222 244556666789999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccCc
Q 015340 198 SALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFT 277 (408)
Q Consensus 198 l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~ 277 (408)
+.++++.+++..++..+.+. +++.+.+++|| ||+|+||++++++++.++.++....++++. .++. .+
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~ 145 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD---PP 145 (257)
T ss_pred HHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc---cc
Confidence 99999999988885555444 56666779999 788999999999999988777555555443 2221 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccc
Q 015340 278 RPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERL 323 (408)
Q Consensus 278 ~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a 323 (408)
.+.++......++.......+|++|+|+|++.|+||+|+++|++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~ 191 (257)
T PF01040_consen 146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKA 191 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHH
Confidence 3444444455667777788889999999999999999999999999
No 43
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.95 E-value=2e-25 Score=217.91 Aligned_cols=216 Identities=17% Similarity=0.113 Sum_probs=167.1
Q ss_pred ccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--ccc--CCCCCcccccccCh
Q 015340 113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV--DKV--NKPYLPLASGEISM 188 (408)
Q Consensus 113 Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~--Dr~--nk~~RPlasG~is~ 188 (408)
||+++..++.|++.|..+|.... .+++. ..+++++++.+++.++|.+|||+|.+. |+. .+|.|++++|.+|+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999986543 56653 356778899999999999999999853 543 25789999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhch-----HHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHH
Q 015340 189 GTGIAITLASALMSLAYA----VMIRS-----PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (408)
Q Consensus 189 ~~a~~~~~~l~~l~l~la----~~l~~-----~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg 259 (408)
+++...+.+++++++.++ +..++ +++....+++++.+++|| .||+++|++++ |++..++.+|.+...|
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHH
Confidence 999988877776555444 33442 144444457778889999 58999999885 8888888888777666
Q ss_pred HHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHH
Q 015340 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSI 339 (408)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~ 339 (408)
.+.. ..+. ++...++..+...+++.+++.+||++|+|+|+++|+||+|+++|+|++ .++...+...
T Consensus 154 ~~yv-----q~~~---~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a------~~l~~~l~~~ 219 (284)
T TIGR00751 154 TQYL-----QAHR---VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDART------RMYHQGLLAV 219 (284)
T ss_pred HHHH-----hcCC---CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhH------HHHHHHHHHH
Confidence 5542 2222 455555545556777788999999999999999999999999999999 7888888888
Q ss_pred HHHHHHHHHH
Q 015340 340 AYGAAVVVGA 349 (408)
Q Consensus 340 ~y~~~i~~g~ 349 (408)
+|...++...
T Consensus 220 ay~~~~~~~~ 229 (284)
T TIGR00751 220 AGVCTFVFML 229 (284)
T ss_pred HHHHHHHHHH
Confidence 8876655443
No 44
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=1.5e-25 Score=218.99 Aligned_cols=222 Identities=20% Similarity=0.201 Sum_probs=151.8
Q ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccc
Q 015340 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA 182 (408)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPla 182 (408)
+-+++++++.|..+..........+... ....+..+ ....+++.++.+.++|++||+.|+|+|+.|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMA--SLLLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHH--HHHHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 3568899999998766555444322111 00111111 2345667788899999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCcCcc-ccccccchhHHHHHHhhhhHHHHHH
Q 015340 183 SGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLL-RWKGNSFLAAFCMVSLNGLLTQFPV 260 (408)
Q Consensus 183 sG~is~~~a~~~~~~l~~l~l~la~-~l~~~~~~~~l~~~~~l~~~Ys~~lpp~-rlKr~~~l~~l~l~~~~g~~~~lg~ 260 (408)
+++.....+..+..+...+++.+.. ..|++.+.. .+++.++++.||. ||. ++||.|.+++++++..+|..+.++.
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 6655544444444444444444432 336444433 3566677999995 454 5899999999999998885554433
Q ss_pred HHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHH
Q 015340 261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIA 340 (408)
Q Consensus 261 ~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~ 340 (408)
+. ..+. .++...++.....+++.++.+.++|++|+|+|+++|+||+|+++|+|++ .+++..+..++
T Consensus 152 ~~-----~~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t------~~~~~~~~~~~ 217 (285)
T PRK12872 152 VY-----YYQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT------LKFLLILNLLF 217 (285)
T ss_pred HH-----hccc---ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHH------HHHHHHHHHHH
Confidence 22 1122 1344444445556667788899999999999999999999999999999 78888887777
Q ss_pred HHHHHHHH
Q 015340 341 YGAAVVVG 348 (408)
Q Consensus 341 y~~~i~~g 348 (408)
+...+...
T Consensus 218 ~~~~~~~~ 225 (285)
T PRK12872 218 LILLILGV 225 (285)
T ss_pred HHHHHHHH
Confidence 77665443
No 45
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=2.2e-24 Score=210.27 Aligned_cols=221 Identities=19% Similarity=0.270 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~R 179 (408)
.++.++.++++.||++|..++.+.++|..+|.++.++ +++. +..++..+. +..+.+.|++||++|+|+||.|+|++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-~~~ll~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-AVALFAYFL--FPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-HHHHHHHHH--HHHHHHHhcchhhhhhhccccCCCcc
Confidence 4567888999999999999999999999999764332 3331 111111111 22445667799999999999987754
Q ss_pred c---cc-ccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhH
Q 015340 180 P---LA-SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (408)
Q Consensus 180 P---la-sG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~ 255 (408)
. ++ +|+.+... ...+...+++.+.+..+. .....+++++++.++|| .||+|+|++++.+..+.++. . .
T Consensus 81 ~~r~~~~s~~~~~~~---~~~l~~~l~l~l~~~~~~-~~~~~ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g~~-~-~ 152 (282)
T PRK12875 81 REREVRYRGDRRVLV---AVALSGALALAFLLVLPP-AAWPALLAFLVLSVEYS--APPLRFKTTPVLDSLSNGLY-I-L 152 (282)
T ss_pred CCCCccHHHHHHHHH---HHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHc--CCCccchhccHHHHHHHHHH-H-H
Confidence 3 33 22221111 112222334444444442 22223356788899999 58999999999876554321 1 1
Q ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS 335 (408)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ 335 (408)
..++.|. ...|. .+... +....++|+.+++++||++|+|+|+++|+||+|+++|+|++ .+++..
T Consensus 153 ~~~~~y~----~~tg~----~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a------~~~~~~ 216 (282)
T PRK12875 153 PGVAAYA----LVSGS----LPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRT------YAYCAA 216 (282)
T ss_pred HHHHHHH----HHcCC----CcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhH------HHHHHH
Confidence 1122221 12232 23332 33445789999999999999999999999999999999999 777777
Q ss_pred HHHHHHHHHHHHH
Q 015340 336 MLSIAYGAAVVVG 348 (408)
Q Consensus 336 ll~~~y~~~i~~g 348 (408)
...++-...+.++
T Consensus 217 ~~~~a~~~~~~~~ 229 (282)
T PRK12875 217 CWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555544
No 46
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.94 E-value=7.2e-24 Score=207.11 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=166.3
Q ss_pred HHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccCCCCCcccccc
Q 015340 108 LYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV--DKVNKPYLPLASGE 185 (408)
Q Consensus 108 ~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~--Dr~nk~~RPlasG~ 185 (408)
|++.+||+++..++.|++.|..+|.....++++. ..++++++..+.+.++|.+|||+|.+. |+.+. .+ ..++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~-~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HS-IVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CC-ccccc
Confidence 6799999999999999999999986543456654 256678899999999999999999864 77422 11 22222
Q ss_pred cChHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHH
Q 015340 186 ISMGTGIAITLASALMSLAY----AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (408)
Q Consensus 186 is~~~a~~~~~~l~~l~l~l----a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~ 261 (408)
.++++......++..++..+ .+..+ |+++...+++++.++.|| .||+++|++++ |+++.++.+|.++..+.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence 35677776666665555443 34445 555555567888899999 58999999986 888888888877766655
Q ss_pred HHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
.. ... .+++..++..+..++.+.++..+||++|+|+|+++|+||+|+++|+|++ .++...+...+|
T Consensus 153 yv-----qt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a------~~l~~~l~~~~y 218 (285)
T TIGR02235 153 YA-----QSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLA------AKIVPWVISLSY 218 (285)
T ss_pred HH-----hCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhH------HHHHHHHHHHHH
Confidence 42 222 2466666666667788888999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHh
Q 015340 342 GAAVVVGAS 350 (408)
Q Consensus 342 ~~~i~~g~~ 350 (408)
...+.....
T Consensus 219 ~~~i~~v~~ 227 (285)
T TIGR02235 219 VVLLIAVIG 227 (285)
T ss_pred HHHHHHHHH
Confidence 876655443
No 47
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.93 E-value=2.2e-23 Score=201.72 Aligned_cols=231 Identities=16% Similarity=0.140 Sum_probs=169.7
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--cccc----CCC
Q 015340 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NKP 177 (408)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e--~Dr~----nk~ 177 (408)
+.+.|++++|||++...+.|++.|.++|......+++. ..+++++++.+++..+|..|||.|.+ .|.. .+.
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~ 83 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ 83 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence 45789999999999999999999999997654345443 46778999999999999999999976 4643 233
Q ss_pred CCcccccccChHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhh
Q 015340 178 YLPLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (408)
Q Consensus 178 ~RPlasG~is~~~a~~~~~~l~~l~l~la----~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g 253 (408)
++-+...+++++..+.+.+.+...+..++ ...+ |.+++..+++++.++.|+. +|+++.+.|+ |++..++.+|
T Consensus 84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~-~~~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG 159 (303)
T COG1575 84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSD-WLVLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFG 159 (303)
T ss_pred cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHH
Confidence 45555566677777666655554444333 3445 4455555788899999994 7889998885 7787877788
Q ss_pred hHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHH
Q 015340 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLS 333 (408)
Q Consensus 254 ~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~ 333 (408)
.+...+.|.. ..+ .+++..++..+.+.+.+..++..|+++|+|+|+|+|++|+||++|++++ ....
T Consensus 160 ~l~v~g~~yi-----qt~---~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~------~~l~ 225 (303)
T COG1575 160 PLIVLGAYYI-----QTG---RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNA------RKLY 225 (303)
T ss_pred HHHHHHHHHH-----hcc---cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhH------HHHH
Confidence 6666555542 222 2455555555556667778899999999999999999999999999999 7888
Q ss_pred HHHHHHHHHHHHHHHHhcCcch
Q 015340 334 VSMLSIAYGAAVVVGASSPFLA 355 (408)
Q Consensus 334 ~~ll~~~y~~~i~~g~~~~~~~ 355 (408)
..++..+|.+.++........+
T Consensus 226 ~~l~~~a~l~~~~~~i~~~~~~ 247 (303)
T COG1575 226 AALLVVAYLAIVIFVILGLFPV 247 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhchH
Confidence 8888888876655433333333
No 48
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-23 Score=203.58 Aligned_cols=204 Identities=17% Similarity=0.146 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC--C
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y 178 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~--~ 178 (408)
.+.++|+|++++||.....+++..+.|.++|... ..++. .++++.++..++.++++++|+++|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 5678999999999999999999999999999752 23332 256788899999999999999999999999776 9
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHH
Q 015340 179 LPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (408)
Q Consensus 179 RPlasG~is~~~a~~~~~~l~~l~l~la-~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~ 257 (408)
||+++|++++++++.++.++.++|+.+. +..|+..-.+.++..++..+.||.. +||++....+..++..+.++.
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~NiviGg~aGa~Ppl 163 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQNIVIGGFAGAMPPL 163 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCcccceeeeecccccccc
Confidence 9999999999999999999999999887 6677665555555666778899973 799988665555444344455
Q ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccc
Q 015340 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERL 323 (408)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a 323 (408)
+||. ++.|. .+...+++.+.+++|+...--.-++.-.||-+++|+..+|++-|++.+
T Consensus 164 iGwa-----Avtg~----~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t 220 (304)
T COG0109 164 IGWA-----AVTGS----ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRT 220 (304)
T ss_pred ceee-----eeeCC----CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHH
Confidence 5553 35565 366667777888999855433445667778899999999999999998
No 49
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=5.1e-23 Score=200.89 Aligned_cols=173 Identities=21% Similarity=0.189 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCC-
Q 015340 153 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQ- 231 (408)
Q Consensus 153 ~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~- 231 (408)
+.+...++|++||++|+|+|++|+|+||.+ +++.+..++.+..++|+.+++..|+ .+ ++ +++.+.++.||.+
T Consensus 67 ~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~-~l-l~-ll~~l~g~lYS~Gl 139 (307)
T PRK13591 67 GGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGM-LL-LA-FLPFITGYLYSKGI 139 (307)
T ss_pred HHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhH-HH-HH-HHHHHHHHHhcCCC
Confidence 445678999999999999999999999987 7888999999999999999998884 33 23 4667779999953
Q ss_pred -cCc--cccccccchhHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHh
Q 015340 232 -LPL--LRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKK 308 (408)
Q Consensus 232 -lpp--~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k 308 (408)
.+| +|+|+.+.++++.+++.+|.....+. +. ..+. . .+.....++.....++++.+||++|+|||++
T Consensus 140 k~~P~plklK~~~glGnl~V~i~~G~~i~g~~---g~--~~~~----~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~ 209 (307)
T PRK13591 140 KIGKFALKLKGGLGVKNIVVGITWGGFIAGIA---GS--YCGS----L-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTL 209 (307)
T ss_pred CCCCccccccCCCchhHHHHHHHHHHHHHHHH---Hh--hhhh----H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 124 47899999999999988885332110 00 0111 0 1111111112222356778999999999999
Q ss_pred cCCcccceeeccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 015340 309 FGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVG 348 (408)
Q Consensus 309 ~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~~i~~g 348 (408)
.|+||+|+++|++++ .++...+..++|++.++..
T Consensus 210 ~G~kTLPV~lG~~~A------~~l~~~l~~~~~l~li~~~ 243 (307)
T PRK13591 210 AGIKTLPVSLGEQKT------RNLLLGIHLFSHLVLGIAL 243 (307)
T ss_pred cCCeeEEEEECHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 8898888888887665543
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.91 E-value=2.4e-22 Score=196.86 Aligned_cols=146 Identities=21% Similarity=0.292 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC--CCC
Q 015340 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPY 178 (408)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~n--k~~ 178 (408)
..+++++|++++|||+|.+|.+.+..+ +++. ...+.. .+...++++++++++++++|++||++|+|+||+| ||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~-~~~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAG-NLLNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHH-hhcccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 345788999999999999999876633 4442 222211 1223567788888999999999999999999995 789
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (408)
Q Consensus 179 RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~ 256 (408)
||+|||++|++++..++.++.++|+.+++.+|+..... .++++++.++||. ++||++++++++++..++..+
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~ 154 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRA 154 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999998888544433 4677888899996 589999999999887555333
No 51
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.91 E-value=3.9e-22 Score=193.21 Aligned_cols=175 Identities=12% Similarity=0.138 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 015340 145 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV 224 (408)
Q Consensus 145 ~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l 224 (408)
..+++++..++..+++|++||++|+|+||+|+|+||+|||++|++++..++.++.++++.++.... ... ...+.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~-i~i-----~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFM-NNV-----GWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHHH
Confidence 355666777888899999999999999999999999999999999999999888777777665441 111 11222
Q ss_pred Hhhc-----cCCcCccccccccchhHHHHHHhhhhHHHHH--HHHHH-HHHHhcCCcccCcHHHHHHHHHHHHHHHHHHH
Q 015340 225 GTAY-----SVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP--VYVHI-QKYVLGRPLEIFTRPLMFATAFISCFCVVIAF 296 (408)
Q Consensus 225 ~~~Y-----s~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg--~~~~~-~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~ 296 (408)
.+.| +. ++|+.++.+|+.++...|..+..| ++... .....|.+ ......+++.+..++.+.++|+
T Consensus 121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~--~~~~~~~~l~l~afl~~l~rEI 193 (299)
T PRK13592 121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP--LLSLPTVLLAFTMYFPSLIWEV 193 (299)
T ss_pred HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc--hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444 64 589999999999988777444222 22210 01112322 1111112333334445588999
Q ss_pred HhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHH
Q 015340 297 IKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIA 340 (408)
Q Consensus 297 i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~ 340 (408)
.+|++| |||++ |.+|+|+++|.|++ .+++..+..++
T Consensus 194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA------~~ia~~l~ii~ 229 (299)
T PRK13592 194 CRKIRA-PKDET-EYVTYSKLFGYKKA------TRFIEVVTLLD 229 (299)
T ss_pred HHhhcC-Ccccc-CCeeechhccchhH------HHHHHHHHHHH
Confidence 999999 88886 59999999999999 77766554433
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.38 E-value=9.4e-13 Score=127.22 Aligned_cols=264 Identities=14% Similarity=0.106 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC--CC
Q 015340 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YL 179 (408)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~--~R 179 (408)
.+..+.|+|+.+|+--+..++....|..+|...+ +++ .+++..++..++.+++|.+||+++.+.|++++| .|
T Consensus 91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~R 164 (409)
T KOG1380|consen 91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNR 164 (409)
T ss_pred cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccc
Confidence 3567899999999987777777777888886543 222 356788899999999999999999999999776 89
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhh-hHHH
Q 015340 180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG-LLTQ 257 (408)
Q Consensus 180 PlasG~is~~~a~~~~~~l~~l~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g-~~~~ 257 (408)
|+++|++|+..|+.++.+....|+.+.++ +|+....++..-.++.+.+|+ ++||..++ +..+|.+-| +.+.
T Consensus 165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihii-nTWvGavVGAIPPL 237 (409)
T KOG1380|consen 165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHII-NTWVGAVVGAIPPL 237 (409)
T ss_pred ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhhh-hhHHHHHhccCCcc
Confidence 99999999999999998888888765544 664433333222344566677 37887643 333333334 3344
Q ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHH--HHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV--IAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS 335 (408)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~--~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ 335 (408)
+||-. ..|. ..+..+++......|.+- ..+..+++ +|..+.|.+.+++.=-.-.. +-.++-+.+
T Consensus 238 MGwAA-----asg~----l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~r---r~alr~s~a 303 (409)
T KOG1380|consen 238 MGWAA-----ASGL----LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCR---RVALRYSLA 303 (409)
T ss_pred chhhh-----hccC----CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhh---HHHHHHHHH
Confidence 45432 2343 244456666667778743 33444443 34589999999885321111 001444444
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHH
Q 015340 336 MLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRA--VDLSDNASILSFYMFIWKLYYA 399 (408)
Q Consensus 336 ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~--vd~~~~~~~~~f~~~iw~l~~~ 399 (408)
++.++|..-. .+... .| +.+-...+...+.+...+ .|.+..++.+.|+.++|.|=..
T Consensus 304 ~~~L~~~~~~-~~lT~--~w----f~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhLP~l 362 (409)
T KOG1380|consen 304 FLPLSYAAPS-TDLTT--WW----FAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHLPLL 362 (409)
T ss_pred Hhhhhccccc-cCccc--ce----eeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence 4444432111 11111 11 111111222223333322 2556677888999998886443
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.19 E-value=2.7e-11 Score=112.23 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHhcccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccCCC
Q 015340 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQT--LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKVNKP 177 (408)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~--~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~--e~Dr~nk~ 177 (408)
..+.+.|+...||+....++.|...|+.+|... ..|++ .. ...++.++....+.++|.+|.|+|. .+|++...
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~--l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkad 134 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR--LA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKAD 134 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh--HH-HHHHHHhhheeeecccchhhhhhhhhhcccccccc
Confidence 456788999999999999999999999999643 33433 22 2344556777789999999999996 47887777
Q ss_pred CCcccccccChHHHHHHHHHHHHHHHHHH---HHhchHHH---HHHHHHHHHHHhhccCCcCccccccccchhHHHHHHh
Q 015340 178 YLPLASGEISMGTGIAITLASALMSLAYA---VMIRSPPF---IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251 (408)
Q Consensus 178 ~RPlasG~is~~~a~~~~~~l~~l~l~la---~~l~~~~~---~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~ 251 (408)
+|.+....+.+.+...+.+.+..+|...+ ..+++... .+.-+.++--.+.|+.+ +.+|...+ +.+++.+.
T Consensus 135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyial-gdliili~ 210 (359)
T KOG4581|consen 135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIAL-GDLIILIL 210 (359)
T ss_pred chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEec-cCEEEEEe
Confidence 99999999999998888887777654432 33442221 11222334456778853 45676554 44444444
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHH
Q 015340 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFR 331 (408)
Q Consensus 252 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~ 331 (408)
+|.+..+-.|.. + .|.. .-++. -..+...+-+-++...|+.+|.|.||++|+-|+++.+|+..+ -.
T Consensus 211 fgpiavlfaf~~-q---~g~l-~~~~l---~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s------~i 276 (359)
T KOG4581|consen 211 FGPIAVLFAFAI-Q---TGHL-AIFPL---GYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTAS------HI 276 (359)
T ss_pred echHHHHHHHHH-h---cCce-eEEee---hheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHH------HH
Confidence 554433222221 1 2322 11110 001112223345678899999999999999999999999999 77
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 015340 332 LSVSMLSIAYGAAVVVGAS 350 (408)
Q Consensus 332 i~~~ll~~~y~~~i~~g~~ 350 (408)
++..++.+-|.+..+.+..
T Consensus 277 ly~~llf~py~lf~i~~~~ 295 (359)
T KOG4581|consen 277 LYAMLLFAPYLLFFIFALH 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888866655543
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=89.97 E-value=0.98 Score=44.72 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHH
Q 015340 146 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI 194 (408)
Q Consensus 146 ~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~ 194 (408)
.++.-+.+....+.++..|++.|.|+|+.|+|+-+.. ++..+.+..+
T Consensus 178 ~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l 224 (303)
T COG1575 178 ILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL 224 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence 3444556667777888999999999999987754322 3334444443
No 55
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=86.92 E-value=3.2 Score=40.41 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 153 ~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
.++.......+||.-|+|.||.+ .+.-|..=|+
T Consensus 170 ~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 170 IFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 33445566688999999999984 4566766665
No 56
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=86.74 E-value=2.5 Score=42.19 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCC-CCCcccccccChHHHHHHHHHHH
Q 015340 149 ALVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASA 199 (408)
Q Consensus 149 ~~va~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a~~~~~~l~ 199 (408)
..+...+..+.....||+-|+|.||.+. +.-|.-=| ++.+..+...+.
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l~~~l~ 242 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVLFAILF 242 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHHHHHHH
Confidence 3455556667778899999999999864 45554334 455544433333
No 57
>PRK13591 ubiA prenyltransferase; Provisional
Probab=86.72 E-value=2.6 Score=41.97 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=19.0
Q ss_pred HhhhcccccccccCC-CCCcccccc
Q 015340 162 AINQLSDVEVDKVNK-PYLPLASGE 185 (408)
Q Consensus 162 ~~ND~~D~e~Dr~nk-~~RPlasG~ 185 (408)
.+||+-|.|.||.+. +.-|..=|+
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~ 221 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE 221 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH
Confidence 689999999999864 466766564
No 58
>PLN00012 chlorophyll synthetase; Provisional
Probab=86.33 E-value=3.6 Score=42.20 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhccccccccc-CCCCCcccccc
Q 015340 153 AVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (408)
Q Consensus 153 ~~l~~~a~~~~ND~~D~e~Dr~-nk~~RPlasG~ 185 (408)
.++...+....||+-|+|.|+. +++.-|..-|+
T Consensus 261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 3456667788999999999997 46777776665
No 59
>PLN02922 prenyltransferase
Probab=85.79 E-value=3.5 Score=41.18 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccCCC-CCcccccccChHHHHHHH
Q 015340 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT 195 (408)
Q Consensus 149 ~~va~~l~~~a~~~~ND~~D~e~Dr~nk~-~RPlasG~is~~~a~~~~ 195 (408)
.-+...+..+.....||+-|+|+||.+++ .-|.-=| ++.+..+.
T Consensus 193 ~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~ 237 (315)
T PLN02922 193 ASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRVV 237 (315)
T ss_pred HHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHHH
Confidence 33444556667888999999999999754 4454334 44444443
No 60
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=85.70 E-value=3.6 Score=40.90 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhcccccccccCC-CCCcccccccChHHHHHH
Q 015340 153 AVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAI 194 (408)
Q Consensus 153 ~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a~~~ 194 (408)
..+........||+-|+|+||.+. +.-|.-=| ++.+..+
T Consensus 183 ~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l 222 (304)
T PRK07419 183 LGLATSLILFCSHFHQVEDDLAAGKRSPIVRLG---TKRGAQL 222 (304)
T ss_pred HHHHHHHHHHHcCCcchhhHHHcCCcceeeeec---hHhHHHH
Confidence 345566778899999999999864 45554333 4444443
No 61
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=84.38 E-value=8.4 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhccccccccc-CCCCCccccccc
Q 015340 150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGEI 186 (408)
Q Consensus 150 ~va~~l~~~a~~~~ND~~D~e~Dr~-nk~~RPlasG~i 186 (408)
+++.++-...-..+|++.|+|.|+. +.|.-|..-|+-
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~ 203 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDN 203 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhh
Confidence 3455555666778999999999997 456777777753
No 62
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=84.31 E-value=4.1 Score=40.58 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 155 l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
+...+....||+-|+|.||.. +|.-|..-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 445566789999999999984 5677776665
No 63
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=83.30 E-value=6.2 Score=38.85 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhcccccccccC-CCCCcccccccChHHHHHHHHHHHHHHHHHHHHhc
Q 015340 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210 (408)
Q Consensus 151 va~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~ 210 (408)
+++.+...+...+||+-|.|.||.+ ++.-|. ++..+.+..+...+.+++.++...++
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446677889999999999975 444443 45567777776666666655444444
No 64
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=82.84 E-value=13 Score=36.67 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhcccccccccC-CCCCcccccccChHHHHHHHHHHHHHHHHH
Q 015340 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAY 205 (408)
Q Consensus 152 a~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~l~~l~l~l 205 (408)
+..+...+...+||+-|+|.|+.. ++.-|.- +..+.+..+..++.+++..+
T Consensus 173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~---lG~~~a~~~~~~~~~~a~~~ 224 (282)
T PRK12875 173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATV---LGERRTYAYCAACWLLAAAA 224 (282)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHcCCccchhh---ccHhhHHHHHHHHHHHHHHH
Confidence 344556666889999999999974 4555553 33455555555554444443
No 65
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=82.66 E-value=6 Score=39.26 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 154 ~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
++...+....||+-|+|.|+.+ +|.-|..-|+
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~ 225 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI 225 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence 3456677789999999999975 4566665554
No 66
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=81.90 E-value=18 Score=37.37 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhcccccc
Q 015340 151 VPAVLMHIYVVAINQLSDVEV 171 (408)
Q Consensus 151 va~~l~~~a~~~~ND~~D~e~ 171 (408)
-+..++..--.++|++++.+.
T Consensus 112 ta~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 112 TLLILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 344556667788999998654
No 67
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=81.65 E-value=7.2 Score=38.18 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCC-CCCcccccccChHHHHHHHHHHH
Q 015340 150 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASA 199 (408)
Q Consensus 150 ~va~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a~~~~~~l~ 199 (408)
.+...+........||+-|+|.||.+. +.-|.-=| .+.+..+...+.
T Consensus 174 ~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~ 221 (293)
T PRK06080 174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALL 221 (293)
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHH
Confidence 334445666777899999999999853 44454334 444444433333
No 68
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=80.88 E-value=6.3 Score=39.69 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 152 a~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
..++...+...+||+-|+|.|+.. ++.-|+.=|+
T Consensus 188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 344556667779999999999985 4566665554
No 69
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=80.67 E-value=7.7 Score=37.85 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 154 ~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
.+...+....||+-|.|.||.+ ++.-|..=|+
T Consensus 171 ~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 171 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 3445566789999999999985 4566665554
No 70
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=79.96 E-value=12 Score=36.26 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhccChhhhHhcCCcccceeeccc
Q 015340 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321 (408)
Q Consensus 287 ~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k 321 (408)
..+...+-..+||+.|.|.|+++ ++.=|+.-|+-
T Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~i 79 (279)
T PRK12884 46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRI 79 (279)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCC
Confidence 33444566789999999999988 67777777753
No 71
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=79.71 E-value=8.5 Score=37.88 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhcccccccccCC-CCCcccccccChHHHHHHHHHHH
Q 015340 152 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASA 199 (408)
Q Consensus 152 a~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a~~~~~~l~ 199 (408)
...+...+....||+-|+|+||.+. +.-|. ++..+.+..+...+.
T Consensus 169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~ 214 (285)
T TIGR02235 169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVI 214 (285)
T ss_pred HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHH
Confidence 3445667788899999999999864 45454 344455554443333
No 72
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=79.14 E-value=12 Score=36.48 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhccccccccc-CCCCCcccccc
Q 015340 151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (408)
Q Consensus 151 va~~l~~~a~~~~ND~~D~e~Dr~-nk~~RPlasG~ 185 (408)
+..++-...-..+||.-|+|.|+. +.|.-|..-|+
T Consensus 165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 344455566677999999999987 45667776663
No 73
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=78.71 E-value=7.2 Score=38.44 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhccccccccc-CCCCCccccccc
Q 015340 151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGEI 186 (408)
Q Consensus 151 va~~l~~~a~~~~ND~~D~e~Dr~-nk~~RPlasG~i 186 (408)
+..++-...-..+|++.|+|.|+. +.|.-|..-|+-
T Consensus 169 ~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 205 (291)
T PRK12886 169 LAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVN 205 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence 334444455556888999999986 557777776763
No 74
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=78.45 E-value=28 Score=34.05 Aligned_cols=36 Identities=19% Similarity=0.037 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhccChhhhHhcCC-cccceeeccccc
Q 015340 288 SCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKERL 323 (408)
Q Consensus 288 ~~~~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~k~a 323 (408)
++...+...+||+.|.|-|+++-+ |.=|..-|+-..
T Consensus 57 ~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~ 93 (289)
T COG0382 57 FLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSV 93 (289)
T ss_pred HHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCH
Confidence 334456778999999999998877 455666665543
No 75
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=77.75 E-value=11 Score=36.93 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 150 ~va~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
++..++....-...|++.|+|.|+.+ .|.-|..-|+
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 34445555666678999999999975 4566666664
No 76
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=76.87 E-value=11 Score=36.99 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccC-CCCCccccccc
Q 015340 149 ALVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEI 186 (408)
Q Consensus 149 ~~va~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~i 186 (408)
.++..++-...-...|++.|+|.|+.. .|.-|..-|.-
T Consensus 167 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~ 205 (282)
T PRK12848 167 LFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRY 205 (282)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccc
Confidence 344455555666678999999999974 46777766653
No 77
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=76.38 E-value=11 Score=36.95 Aligned_cols=35 Identities=23% Similarity=0.076 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 151 va~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
+...+-..+-..+|++.|+|.|+.. .|.-|.--|.
T Consensus 166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 3444556667889999999999974 4666665564
No 78
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=75.90 E-value=13 Score=36.89 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhcccccccccC-CCCCccccccc
Q 015340 151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEI 186 (408)
Q Consensus 151 va~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~i 186 (408)
+..++-...-...||+.|+|.|+.+ .|.-|+.-|+-
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 4445556667789999999999984 56778777763
No 79
>PRK13592 ubiA prenyltransferase; Provisional
Probab=75.83 E-value=23 Score=35.18 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhccChhhhHhcCCcccceeecc
Q 015340 285 AFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 320 (408)
Q Consensus 285 ~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~ 320 (408)
+.+++.+.+-.++||+.|+|-|++ ++..=|+-=|+
T Consensus 53 ~~vf~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~ 87 (299)
T PRK13592 53 FTVFGFWMILRIADDFKDYETDRR-LFPHRALPSGR 87 (299)
T ss_pred HHHHHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCC
Confidence 334444566778999999999965 45566665553
No 80
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=74.55 E-value=16 Score=36.11 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=20.2
Q ss_pred HHHHHHHhhccChhhhHhcCC-cccceeecc
Q 015340 291 CVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (408)
Q Consensus 291 ~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~ 320 (408)
..+...+||+.|.|.|+++-+ +.=|+.=|+
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~ 89 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGV 89 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence 345678999999999998633 233444444
No 81
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=74.27 E-value=13 Score=36.57 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhcccccccccCC-CCCcccccccChHHHHHHHH
Q 015340 153 AVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITL 196 (408)
Q Consensus 153 ~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a~~~~~ 196 (408)
..+...+....||+-|+|.|+.+. +.-|. ++..+.+..+..
T Consensus 173 ~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~ 214 (284)
T TIGR00751 173 TGLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQ 214 (284)
T ss_pred HHHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHH
Confidence 344556777799999999999864 44444 344455544433
No 82
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=73.68 E-value=13 Score=36.20 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=22.2
Q ss_pred HHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 156 MHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 156 ~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
...+-...||.-|+|.||+. .|.-|..-|+
T Consensus 166 ~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 166 VNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 33455678999999999984 5677776665
No 83
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=73.46 E-value=14 Score=36.67 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhcccccccccCC-CCCccccc
Q 015340 152 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG 184 (408)
Q Consensus 152 a~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG 184 (408)
..++...+...+||+-|+|.||.+. +.-|+-=|
T Consensus 190 ~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG 223 (308)
T PRK12887 190 FVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLG 223 (308)
T ss_pred HHHHHHHHHHHHHhccchhhHHHcCCcchhHHHh
Confidence 4445566677899999999999854 45554434
No 84
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=70.55 E-value=44 Score=31.26 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhccChhhhHhc-CCcccceeecccc
Q 015340 289 CFCVVIAFIKDLHDVDGDKKF-GIKTLSVMLGKER 322 (408)
Q Consensus 289 ~~~~~~~~i~di~DiegD~k~-GirTlpv~lG~k~ 322 (408)
+.......+||+.|.|.|+.. +.+.-|+.-|+-+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 444567789999999999985 3344455444443
No 85
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=70.01 E-value=21 Score=34.61 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 154 ~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
++...+-..+||+-|.|.|+.+ .|.-|..-|+
T Consensus 167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 3445566789999999999985 4566665554
No 86
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=69.37 E-value=17 Score=36.11 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (408)
Q Consensus 150 ~va~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~ 185 (408)
+++.++-..+-.++|+.-|+|.|+.. .+.-|+-=|+
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~ 219 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGK 219 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhh
Confidence 33445555666789999999999864 4566665563
No 87
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=69.06 E-value=36 Score=33.10 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhccChhhhHhcCCcccceeecc
Q 015340 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 320 (408)
Q Consensus 287 ~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~ 320 (408)
..+...+-..+||+.|.|-|++.. +.=|+.-|+
T Consensus 46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~ 78 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHhhcccccccccC-CCCCcCCCc
Confidence 334446677899999999999764 444554453
No 88
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=67.41 E-value=17 Score=35.75 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhccccccccc-CCCCCcccccc
Q 015340 151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (408)
Q Consensus 151 va~~l~~~a~~~~ND~~D~e~Dr~-nk~~RPlasG~ 185 (408)
+..++-..+-..+|++.|.|.||. +.|.-|..-|+
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 344556666678999999999986 45677776665
No 89
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=66.79 E-value=38 Score=33.58 Aligned_cols=33 Identities=24% Similarity=0.154 Sum_probs=24.9
Q ss_pred HHHHHHHHhhccChhhhHhcCC-cccceeecccc
Q 015340 290 FCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKER 322 (408)
Q Consensus 290 ~~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~k~ 322 (408)
...+-..+||+.|.|-|++..+ |.=|+.-|+-.
T Consensus 56 ~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is 89 (294)
T PRK12873 56 VSGAGCIANDLWDRRIDRKVERTKNRPLARGKIS 89 (294)
T ss_pred HHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCC
Confidence 3355678999999999998877 46677666543
No 90
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=65.86 E-value=37 Score=33.49 Aligned_cols=34 Identities=29% Similarity=0.149 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhccChhhhHhcCC-cccceeecccc
Q 015340 289 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKER 322 (408)
Q Consensus 289 ~~~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~k~ 322 (408)
+...+-..+||+.|.|-|++..+ +.=|+.-|+-.
T Consensus 56 ~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is 90 (289)
T PLN02809 56 LLRGAGCTINDLLDRDIDKKVERTKLRPIASGALT 90 (289)
T ss_pred HHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCC
Confidence 33455678999999999998765 56777777543
No 91
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=64.83 E-value=57 Score=32.10 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhcccccccccC-CCCCcccccccC
Q 015340 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEIS 187 (408)
Q Consensus 150 ~va~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~is 187 (408)
.+..++-..+-..+|++.|+|.|+.. .+.-|..-|+-+
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~ 210 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYA 210 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcccc
Confidence 34555666677789999999999974 355666555543
No 92
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=62.60 E-value=65 Score=32.10 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhccccccccc-CCCCCcccccc
Q 015340 152 PAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (408)
Q Consensus 152 a~~l~~~a~~~~ND~~D~e~Dr~-nk~~RPlasG~ 185 (408)
..++-...-..++++.|+|.|+. .+|.-|..-|.
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 33444455556789999999987 56777776665
No 93
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=61.10 E-value=76 Score=30.94 Aligned_cols=35 Identities=14% Similarity=-0.114 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhccChhhhHhcCC-cccceeeccc
Q 015340 287 ISCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE 321 (408)
Q Consensus 287 ~~~~~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~k 321 (408)
..+...+-..+||+.|.|-|++..+ +.=|+.-|+-
T Consensus 45 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i 80 (279)
T PRK12869 45 GTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLV 80 (279)
T ss_pred HHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCc
Confidence 3344466789999999999998655 3334444543
No 94
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=59.68 E-value=42 Score=33.07 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhcccccccccCC-CCCcccccccChHHH
Q 015340 154 VLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTG 191 (408)
Q Consensus 154 ~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a 191 (408)
.+........|++-|+|.||.+. +.-|. ++..+.+
T Consensus 181 ~l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 181 GLLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 34456677899999999999864 34443 4445555
No 95
>PRK13595 ubiA prenyltransferase; Provisional
Probab=56.18 E-value=65 Score=31.95 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=16.8
Q ss_pred HHHHHHhhccChhhhHhcCCc
Q 015340 292 VVIAFIKDLHDVDGDKKFGIK 312 (408)
Q Consensus 292 ~~~~~i~di~DiegD~k~Gir 312 (408)
.....+||+-|.|-|+++-++
T Consensus 61 ~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 61 LLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHhhhhhhhhccCCCC
Confidence 456679999999999876654
No 96
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=55.43 E-value=1.5e+02 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhccChhhhHhcCC-cccceeecc
Q 015340 289 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (408)
Q Consensus 289 ~~~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~ 320 (408)
+...+-..+||+.|.|-|++..+ +.=|+.=|+
T Consensus 55 l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~ 87 (296)
T PRK04375 55 LVAGAAGALNNYIDRDIDAKMERTKNRPLVTGR 87 (296)
T ss_pred HHHHHHHHHHhHHhhccCCCCCccCCCCCCCCC
Confidence 33456678999999999998644 333444454
No 97
>PRK08238 hypothetical protein; Validated
Probab=51.39 E-value=63 Score=34.29 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHHhhccChhhhHhcCC-cccceeeccc
Q 015340 291 CVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE 321 (408)
Q Consensus 291 ~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~k 321 (408)
..+..++||+-|.|.|+++-+ |.=|+.=|+=
T Consensus 239 ~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~i 270 (479)
T PRK08238 239 ASAVYILNDLLDLEADRAHPRKRRRPFASGAL 270 (479)
T ss_pred HHHHHHHHhhHHhhhhccCCCCCCCCCCCCCC
Confidence 355678999999999998743 3335555544
No 98
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=51.33 E-value=83 Score=30.54 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhccChhhhHhcCC-cccceeecc
Q 015340 288 SCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (408)
Q Consensus 288 ~~~~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~ 320 (408)
.+...+-..+||+.|.|-|++..+ +.=|+.-|+
T Consensus 45 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 78 (280)
T TIGR01473 45 TLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGR 78 (280)
T ss_pred HHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCC
Confidence 333456678999999999997543 333544453
No 99
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=50.90 E-value=85 Score=31.18 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhccChhhhHhcCC-cccceeeccc
Q 015340 287 ISCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE 321 (408)
Q Consensus 287 ~~~~~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~k 321 (408)
..+...+-..+||+.|.|-|++..+ +.=|+.-|+=
T Consensus 56 ~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~i 91 (306)
T PRK13362 56 LSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEI 91 (306)
T ss_pred HHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCC
Confidence 3333456788999999999987655 2345555543
No 100
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=50.12 E-value=2.6e+02 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhcccccc
Q 015340 149 ALVPAVLMHIYVVAINQLSDVEV 171 (408)
Q Consensus 149 ~~va~~l~~~a~~~~ND~~D~e~ 171 (408)
.+.+...+..--..+|+.+|.+.
T Consensus 111 lwtas~~~~al~~~lN~i~~~~~ 133 (303)
T COG1295 111 LWTASNGMSALRDALNKIWRVKP 133 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444455555667787777766
No 101
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=46.50 E-value=2.9e+02 Score=27.49 Aligned_cols=30 Identities=17% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHHHHhhccChhhhHhcCC-cccceeeccc
Q 015340 292 VVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE 321 (408)
Q Consensus 292 ~~~~~i~di~DiegD~k~Gi-rTlpv~lG~k 321 (408)
.+-..+||+-|.|-|+++-| +.=|..-|+=
T Consensus 61 sag~~~Nd~~DrdiD~~~~RT~~RPLpsG~i 91 (300)
T PRK12876 61 TVGIIVNQIIDCAIDKKNPRTSSRVLPAKLL 91 (300)
T ss_pred HHHHHHHhHHHhcccCCCCCCCCCCCCCCCC
Confidence 45678999999999988875 4456655653
No 102
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=45.94 E-value=2.6e+02 Score=27.58 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCC-CCCccccc
Q 015340 150 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASG 184 (408)
Q Consensus 150 ~va~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG 184 (408)
+++.++-..+-.++.++.|+|.|++.. +.-|.-=|
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 334444555557899999999999753 34444334
No 103
>PRK01637 hypothetical protein; Reviewed
Probab=45.72 E-value=3e+02 Score=26.82 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhcccccccc
Q 015340 151 VPAVLMHIYVVAINQLSDVEVDK 173 (408)
Q Consensus 151 va~~l~~~a~~~~ND~~D~e~Dr 173 (408)
.+...+.+-...+|+.++.+++|
T Consensus 104 sa~~~~~~l~~a~N~i~~~~~~R 126 (286)
T PRK01637 104 VALMLISSIDKALNTIWRSKRKR 126 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC
Confidence 34455666778899999876553
No 104
>PLN02878 homogentisate phytyltransferase
Probab=45.04 E-value=86 Score=30.89 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhcccccccccC-CCCCcccccccChHHHHHHHHHH
Q 015340 154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLAS 198 (408)
Q Consensus 154 ~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~l 198 (408)
++.......+||+-|.|-||.. .+.-|+-=| .+.+..++..+
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG---~~~~~~i~~~l 208 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLG---QKRVFWLCVNL 208 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechhhC---hHHHHHHHHHH
Confidence 3344455689999999999984 455565444 34444444333
No 105
>PLN02776 prenyltransferase
Probab=43.13 E-value=1.5e+02 Score=30.05 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhccChhhhHhcCC-cccceeeccc
Q 015340 287 ISCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGKE 321 (408)
Q Consensus 287 ~~~~~~~~~~i~di~DiegD~k~Gi-rTlpv~lG~k 321 (408)
..+-..+-..+||+.|.|-|++..+ +.=|+.-|+=
T Consensus 38 ~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGri 73 (341)
T PLN02776 38 TMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRI 73 (341)
T ss_pred HHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCC
Confidence 3333455678999999999988665 3445555543
No 106
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=33.47 E-value=4.2e+02 Score=25.00 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhcccc
Q 015340 149 ALVPAVLMHIYVVAINQLSDV 169 (408)
Q Consensus 149 ~~va~~l~~~a~~~~ND~~D~ 169 (408)
.+.+....++-..++|+.+|.
T Consensus 81 l~~a~~~~~~l~~a~~~i~~~ 101 (260)
T PF03631_consen 81 LWSASSFFASLQRALNRIYGV 101 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 355566677777889999987
No 107
>COG4125 Predicted membrane protein [Function unknown]
Probab=26.90 E-value=3.2e+02 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhccccccccc
Q 015340 154 VLMHIYVVAINQLSDVEVDKV 174 (408)
Q Consensus 154 ~l~~~a~~~~ND~~D~e~Dr~ 174 (408)
.......++.|-.+|+-.-|.
T Consensus 51 tvAm~WN~vyN~lFd~~~rr~ 71 (149)
T COG4125 51 TVAMIWNFVYNLLFDRAERRM 71 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777766554
No 108
>PRK11383 hypothetical protein; Provisional
Probab=26.32 E-value=4.6e+02 Score=23.23 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=11.9
Q ss_pred HHHHHHHHhhccChhhh
Q 015340 290 FCVVIAFIKDLHDVDGD 306 (408)
Q Consensus 290 ~~~~~~~i~di~DiegD 306 (408)
...++.+-|++||...+
T Consensus 115 LFgai~vQKn~RD~~~~ 131 (145)
T PRK11383 115 LFGAVAVQKNIRDAGIN 131 (145)
T ss_pred HHHHHHHHhhhhhhhhc
Confidence 33457788999998544
No 109
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.22 E-value=2.3e+02 Score=22.16 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhch
Q 015340 193 AITLASALMSLAYAVMIRS 211 (408)
Q Consensus 193 ~~~~~l~~l~l~la~~l~~ 211 (408)
.+..+..++|++.++..+.
T Consensus 15 ~il~~~~iisfi~Gy~~q~ 33 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQS 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555667777776653
No 110
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.51 E-value=2.7e+02 Score=22.94 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=23.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHhhccCCcCcccc
Q 015340 186 ISMGTGIAITLASALMSLAYAVMIRS--PPFIWAVIAWIFVGTAYSVQLPLLRW 237 (408)
Q Consensus 186 is~~~a~~~~~~l~~l~l~la~~l~~--~~~~~~l~~~~~l~~~Ys~~lpp~rl 237 (408)
...+.--.+..+..++|++.++.... +.. .++.++++++.+-+ +||.++
T Consensus 23 kaEr~~q~ilti~aiVg~i~Gf~~Qqls~tv-y~vg~~~v~t~li~--LPpwP~ 73 (101)
T KOG4112|consen 23 KAERFQQLILTIGAIVGFIYGFAQQQLSVTV-YIVGAGFVFTLLIT--LPPWPW 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc--CCCchh
Confidence 33333333334445566666665432 222 22335555555555 577654
No 111
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=20.37 E-value=5.2e+02 Score=22.84 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=12.6
Q ss_pred CcccccccChHHHHH
Q 015340 179 LPLASGEISMGTGIA 193 (408)
Q Consensus 179 RPlasG~is~~~a~~ 193 (408)
-|+++|+++.++...
T Consensus 59 vPiAtGki~~~~l~~ 73 (140)
T PF04284_consen 59 VPIATGKIGFKDLLN 73 (140)
T ss_pred ccccCCCcCHHHHHH
Confidence 599999999998643
Done!