Query 015340
Match_columns 408
No_of_seqs 380 out of 2211
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kra_B Geranyl diphosphate syn 36.7 67 0.0023 30.0 6.7 46 291-342 73-118 (274)
2 3qkc_B Geranyl diphosphate syn 19.4 2.4E+02 0.0081 26.1 7.1 43 292-342 79-121 (273)
3 3ipi_A Geranyltranstransferase 15.8 2.3E+02 0.0078 26.6 6.1 43 292-341 76-118 (295)
4 2nx7_A Nematocyst outer WALL a 15.8 25 0.00086 20.6 -0.4 11 14-24 4-14 (28)
5 3m0g_A Farnesyl diphosphate sy 14.1 56 0.0019 31.0 1.2 38 286-323 204-252 (297)
6 4f62_A Geranyltranstransferase 13.2 3.7E+02 0.013 25.4 6.8 44 292-341 79-123 (317)
7 3tc1_A Octaprenyl pyrophosphat 12.6 2.8E+02 0.0097 26.2 5.8 43 292-341 71-113 (315)
8 3mzv_A Decaprenyl diphosphate 12.4 3.8E+02 0.013 25.6 6.7 45 290-341 85-129 (341)
9 3lsn_A Geranyltranstransferase 12.3 52 0.0018 31.2 0.4 38 286-323 211-259 (304)
10 3p8l_A Geranyltranstransferase 12.1 2.8E+02 0.0096 26.0 5.5 46 290-341 83-129 (302)
No 1
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=36.67 E-value=67 Score=29.96 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=32.5
Q ss_pred HHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHH
Q 015340 291 CVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYG 342 (408)
Q Consensus 291 ~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~ 342 (408)
-.+..+-.|+++.++|.++|+.|.-.++|...+ ....-.++..++-
T Consensus 73 H~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~A------IlaGD~Ll~~Af~ 118 (274)
T 3kra_B 73 HAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVE------LLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccCCccCCCCCCchhhcChHHH------HHHHHHHHHHHHH
Confidence 345566779984444667999999999999988 5555555555543
No 2
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=19.44 E-value=2.4e+02 Score=26.06 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=31.2
Q ss_pred HHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHH
Q 015340 292 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYG 342 (408)
Q Consensus 292 ~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~ 342 (408)
.+..+-.|++|.+. +.|+.|.-.++|...+ ....-.++..++-
T Consensus 79 ~aSLIHDDI~D~d~--RRG~pt~h~~~G~~~A------IlaGD~Ll~~Af~ 121 (273)
T 3qkc_B 79 VAAYTHENLPLTDG--PMSKSEIQHKFDPNIE------LLTGDGIIPFGLE 121 (273)
T ss_dssp HHHHHHHSCCBTTB--CSSSSCCCCSSCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHcCcccCcc--CCCCCCchhhcCHHHH------HHHHHHHHHHHHH
Confidence 44556779998754 7899999999999988 5555555555543
No 3
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=15.81 E-value=2.3e+02 Score=26.57 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=29.7
Q ss_pred HHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 292 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 292 ~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
.+..+-.|+.| ++|.++|+.|.-.++|.+.+ ....-.++..++
T Consensus 76 ~asLIHDDi~D-~s~~RRG~pt~h~~~G~~~A------IlaGD~Ll~~a~ 118 (295)
T 3ipi_A 76 SASLIHDDLLD-QGLVRRNLPSAPEKFGPSGA------LLCGDYLIAKSI 118 (295)
T ss_dssp HHHHHHHHHHH-HHTSCTTSCCCCCSSCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHCcCcC-CCCCCCCCccHHHhcCccHH------HHHHHHHHHHHH
Confidence 34455667766 34678899999999999988 555555544444
No 4
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=15.77 E-value=25 Score=20.63 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=8.1
Q ss_pred ccccccccccc
Q 015340 14 YHPLQKAGCIK 24 (408)
Q Consensus 14 ~~~~~~~~~~~ 24 (408)
-|+|||.||-.
T Consensus 4 pcslqqpgcss 14 (28)
T 2nx7_A 4 PCSLQQPGCSS 14 (28)
T ss_dssp THHHHSTTCCG
T ss_pred CccccCCCccc
Confidence 47788888854
No 5
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=14.15 E-value=56 Score=30.95 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccChhh-----------hHhcCCcccceeeccccc
Q 015340 286 FISCFCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERL 323 (408)
Q Consensus 286 ~~~~~~~~~~~i~di~Dieg-----------D~k~GirTlpv~lG~k~a 323 (408)
+..-+-.++.+..|+.|+.+ |.+.|+.|+|+.+|-+.+
T Consensus 204 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 252 (297)
T 3m0g_A 204 YATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGA 252 (297)
T ss_dssp HHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHH
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=13.18 E-value=3.7e+02 Score=25.41 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=25.8
Q ss_pred HHHHHHhhccChhh-hHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 292 VVIAFIKDLHDVDG-DKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 292 ~~~~~i~di~Dieg-D~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
.+..+-.|+|.+++ |.+.|+.|.-.++|+..+ ....-.++..++
T Consensus 79 ~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~A------IlaGD~Ll~~Af 123 (317)
T 4f62_A 79 AYSLIHDDLPAMDNDELRRGKPTCHIQFDEATA------ILAGDALQTFAF 123 (317)
T ss_dssp HHHHHHHHSTTSCC-------CCHHHHSCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHCCcccccCCCCcCCCccHHhhcCHHHH------HHHHHHHHHHHH
Confidence 44556678864444 477899999999999988 555555554444
No 7
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=12.63 E-value=2.8e+02 Score=26.16 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=17.4
Q ss_pred HHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 292 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 292 ~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
.+..+-.|+.| ++|.+.|+.|.-.++|.+.+ ....-.++..++
T Consensus 71 ~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~A------Il~GD~L~~~a~ 113 (315)
T 3tc1_A 71 TASLLHDDVID-KATMRRKLPSINALFGNFNA------VMLGDVFYSKAF 113 (315)
T ss_dssp HHHHHHHHTC-----------------CCSHH------HHHHHHHHHHHH
T ss_pred HHHHHHcCCCC-CCCCcCCCccHHHHhCchHH------HHHHHHHHHHHH
Confidence 44556778988 46788999999999999988 555555544444
No 8
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=12.45 E-value=3.8e+02 Score=25.56 Aligned_cols=45 Identities=9% Similarity=0.159 Sum_probs=27.2
Q ss_pred HHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 290 FCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 290 ~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
+-.+..+-.|+.|- +|.+.|+.|.-.++|.+.+ ....-.++..++
T Consensus 85 iH~asLiHDDI~D~-s~~RRG~pt~h~~~G~~~A------Il~GD~L~~~a~ 129 (341)
T 3mzv_A 85 IHTATLLHDDVVDE-SRQRRGRPTANLLWDNKSS------VLVGDYLFARSF 129 (341)
T ss_dssp HHHHHHHHHHC-------CTTSCCHHHHSCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHcCccCC-CCCcCCCccHHHhcChHHH------HHHHHHHHHHHH
Confidence 33455566788774 4678899999999999887 555554444443
No 9
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=12.30 E-value=52 Score=31.24 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccChhh-----------hHhcCCcccceeeccccc
Q 015340 286 FISCFCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERL 323 (408)
Q Consensus 286 ~~~~~~~~~~~i~di~Dieg-----------D~k~GirTlpv~lG~k~a 323 (408)
+.-.+-.++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+
T Consensus 211 ~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a 259 (304)
T 3lsn_A 211 YAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAA 259 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHH
No 10
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=12.09 E-value=2.8e+02 Score=26.04 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccChhhh-HhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 290 FCVVIAFIKDLHDVDGD-KKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 290 ~~~~~~~i~di~DiegD-~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
.-.+..+-.|+|++++| .++|+.|.-.++|...+ ....-.++..++
T Consensus 83 iH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~A------IlaGD~Ll~~A~ 129 (302)
T 3p8l_A 83 IHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATA------ILAGDGLLTGAF 129 (302)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHCCchhccCCCccCCCcchhhhcChHHH------HHHHHHHHHHHH
Confidence 33455667799666665 67899999999999988 555555555444
Done!