Query 015340
Match_columns 408
No_of_seqs 380 out of 2211
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 10:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015340.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015340hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 62.1 20 0.0014 31.4 10.0 55 150-205 67-121 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 26.5 42 0.003 29.3 5.7 47 290-342 76-123 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 17.2 72 0.0053 27.4 5.2 46 290-341 73-119 (290)
4 d1v4ea_ a.128.1.1 (A:) Octopre 14.1 93 0.0068 26.6 5.1 45 290-341 65-109 (280)
5 d2q80a1 a.128.1.1 (A:6-296) Ge 11.0 1.2E+02 0.0088 25.9 4.8 45 290-341 51-95 (291)
6 d2ghfa2 g.37.1.1 (A:9-44) Zinc 8.6 49 0.0036 19.4 0.7 15 6-20 7-21 (36)
7 d1r5ba2 b.44.1.1 (A:555-622) E 5.8 74 0.0054 21.3 0.6 34 5-38 1-34 (68)
8 d1te7a_ b.122.1.7 (A:) Hypothe 4.2 1.5E+02 0.011 21.6 1.3 18 301-318 10-27 (103)
9 d1ezfa_ a.128.1.2 (A:) Squalen 4.0 1.9E+02 0.014 25.1 2.3 26 292-317 172-197 (333)
10 d1fpsa_ a.128.1.1 (A:) Farnesy 4.0 4.8E+02 0.035 22.2 5.2 59 280-345 80-138 (348)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=62.13 E-value=20 Score=31.40 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHHHHHHHHHHHHH
Q 015340 150 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205 (408)
Q Consensus 150 ~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~l~~l~l~l 205 (408)
..+.=+++.+.-+..|+.|.|.|.. +|.+|-..-......+...+-.+...++-+
T Consensus 67 A~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 67 AIALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 3455678999999999998888764 345565555555666655554444444433
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=26.47 E-value=42 Score=29.25 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=34.2
Q ss_pred HHHHHHHHhhccChhh-hHhcCCcccceeeccccccCchhHHHHHHHHHHHHHH
Q 015340 290 FCVVIAFIKDLHDVDG-DKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYG 342 (408)
Q Consensus 290 ~~~~~~~i~di~Dieg-D~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~ 342 (408)
+-.+..+-.|++|.+. |.++|..|.-..+|.+.+ ....-.++..++.
T Consensus 76 lH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~A------Il~Gd~l~~~a~~ 123 (299)
T d1rqja_ 76 IHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANA------ILAGDALQTLAFS 123 (299)
T ss_dssp HHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhcccccccceeeeCcchh------hhhcchHHHHHHH
Confidence 3344556679998887 489999999999999988 5555555444443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=17.20 E-value=72 Score=27.42 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=32.4
Q ss_pred HHHHHHHHhhccChhhh-HhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 290 FCVVIAFIKDLHDVDGD-KKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 290 ~~~~~~~i~di~DiegD-~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
+-.+..+-.|++|+++| .+.|..|.-.++|.+.+ ....-.++..++
T Consensus 73 lH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~A------il~Gd~l~~~a~ 119 (290)
T d1rtra_ 73 IHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTA------ILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHH------HHcCcchhHHHH
Confidence 33455667789988775 68999999999999988 555444443333
No 4
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=14.11 E-value=93 Score=26.56 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=31.6
Q ss_pred HHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 290 FCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 290 ~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
+-.+..+-.|+.| ++|.++|..|.-..+|...+ ....-.++..++
T Consensus 65 iH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~a------il~gd~l~~~a~ 109 (280)
T d1v4ea_ 65 VHLASLLHDDVID-GARFRRGKETINFMYGDKAA------VAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhh-hcccccccchhhhccchhhh------hhhHHHHHHhhh
Confidence 3345556678888 67889999999999999988 555444443333
No 5
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.97 E-value=1.2e+02 Score=25.87 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340 290 FCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY 341 (408)
Q Consensus 290 ~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y 341 (408)
.-.+..+-.|+.|- +|.++|..|+-..+|.+.+ ....-.++..++
T Consensus 51 lH~asLihDDi~D~-~~~RRg~pt~~~~~G~~~A------il~gd~l~~~a~ 95 (291)
T d2q80a1 51 LHNASLLIDDIEDN-SKLRRGFPVAHSIYGIPSV------INSANYVYFLGL 95 (291)
T ss_dssp HHHHHHHHHHHHHT-CSEETTEECHHHHHCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHhcccccC-cccccCCCccccccchhhh------hhHHHHHHHHHH
Confidence 33445556677663 4678999999999999987 555555444443
No 6
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=49 Score=19.38 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=11.1
Q ss_pred ccccccccccccccc
Q 015340 6 LSSSFSLKYHPLQKA 20 (408)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (408)
+...|.-||||.|-+
T Consensus 7 ~qGGyECKYC~f~Tq 21 (36)
T d2ghfa2 7 VEGGYECKYCTFQTP 21 (36)
T ss_dssp CCSSEECSSCSCEES
T ss_pred ccCCeeeeecCcccc
Confidence 345678899998865
No 7
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=5.84 E-value=74 Score=21.26 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=25.8
Q ss_pred ccccccccccccccccccccCCCCcchhhhhhhh
Q 015340 5 HLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLN 38 (408)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (408)
|-+..|.-+-.=|.|.+-++.|-+++-|+|-+--
T Consensus 1 ~a~~~F~A~I~vL~hp~~I~~Gy~~vlH~ht~~~ 34 (68)
T d1r5ba2 1 HATTRFIAQIAILELPSILTTGYSCVMHIHTAVE 34 (68)
T ss_dssp CEEEEEEEEEEECSSCCCBSSCCCBEEESSSCCC
T ss_pred CceeEEEEEEEEEcCCCcccCCcEEEEEeeeeEE
Confidence 4455666666667788899999999999997643
No 8
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=4.17 E-value=1.5e+02 Score=21.64 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.2
Q ss_pred cChhhhHhcCCcccceee
Q 015340 301 HDVDGDKKFGIKTLSVML 318 (408)
Q Consensus 301 ~DiegD~k~GirTlpv~l 318 (408)
+-.|.|..+|+||+.++=
T Consensus 10 eRfe~dIlsGkKTITIRD 27 (103)
T d1te7a_ 10 QRFQDDILAGRKTITIRD 27 (103)
T ss_dssp HHHHHHHHTCCCEEEEEC
T ss_pred HhhhHHHhcCCceEEecc
Confidence 345789999999998763
No 9
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.98 E-value=1.9e+02 Score=25.06 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=21.6
Q ss_pred HHHHHHhhccChhhhHhcCCccccee
Q 015340 292 VVIAFIKDLHDVDGDKKFGIKTLSVM 317 (408)
Q Consensus 292 ~~~~~i~di~DiegD~k~GirTlpv~ 317 (408)
.+..+.|=++|+..|.+.|+.-+|.-
T Consensus 172 ~AlQltNIlRDi~eD~~~gR~YlP~e 197 (333)
T d1ezfa_ 172 LFLQKTNIIRDYLEDQQGGREFWPQE 197 (333)
T ss_dssp HHHHHHHHHHTHHHHHHHTCCCSCHH
T ss_pred HHHHHHHHHHhhHHHHhCCcEECCHH
Confidence 34567788999999999999999853
No 10
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.98 E-value=4.8e+02 Score=22.16 Aligned_cols=59 Identities=12% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHHHH
Q 015340 280 LMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAV 345 (408)
Q Consensus 280 ~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~~i 345 (408)
.+-+.+.+=++-.+..+--|+.| ++|.++|..|+-.++|...+ ....-.++..+...++
T Consensus 80 ~~~~A~avEliH~asLihDDi~D-~~~~RRG~pt~~~~~g~~~a------il~gd~ll~~~~~~~l 138 (348)
T d1fpsa_ 80 ALAVGWCIELFQAFFLVADDIMD-QSLTRRGQLCWYKKEGVGLD------AINDSFLLESSVYRVL 138 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TCCEETTEECTTTSTTTTTT------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccc-CCccccccchhhhhccccHH------HHHHHHHHHHHHHHHH
Done!