BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015341
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
pdb|3N5F|B Chain B, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
Length = 408
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 225/395 (56%), Gaps = 32/395 (8%)
Query: 7 RAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGI 66
RA +L+ +M +AGL + D GN+ GR EG N A +L+GSHLD+V + G FDG LG+
Sbjct: 36 RAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGV 95
Query: 67 ITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDK 126
+ + ++ + G + P+EV+AF+DEEG RF+ +GS A+AG LP AL D
Sbjct: 96 LAGVEVVQTMNEHGVV--THHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEALECRDA 153
Query: 127 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 186
G+++ +A+++ +D + L Q P +V Y+E+HIEQG VLE G P+G+V GIAG
Sbjct: 154 EGISLAEAMKQAGLD--PDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAG 211
Query: 187 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXX 246
+K T+ G HAG PMS+R+DPM AAA++I+++E +
Sbjct: 212 LIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR----------------- 254
Query: 247 XXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRS 306
V TVG++ +P NVIP V F +DLR + R+ V ++ + I ++R+
Sbjct: 255 --TGTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERN 312
Query: 307 VSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHL 366
V ER + V+C S ++K A+ AA +++ G +P SGA HD++ ++ +
Sbjct: 313 VRVTTERLQEMPPVLC----SDEVKRAAEAACQKL-GYPSFWLP---SGAAHDSVQLAPI 364
Query: 367 TKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 401
+GM+FVR + G+SHSPAE +D AAG VL
Sbjct: 365 CPIGMIFVRSQDGVSHSPAEWSTKEDC-AAGAEVL 398
>pdb|1Z2L|A Chain A, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli
K12 In Complex With Substrate Allantoate
pdb|1Z2L|B Chain B, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli
K12 In Complex With Substrate Allantoate
Length = 423
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 190/404 (47%), Gaps = 34/404 (8%)
Query: 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFD 61
SP + ++ M +GL T D +GN++GR+ G + +L GSH+DTVV+ G D
Sbjct: 35 SPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLD 94
Query: 62 GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVSA 120
G G + A A+ LK+ + G R VEV+A ++EEG RF F GS + G+ P
Sbjct: 95 GQFGALAAWLAIDWLKT--QYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDV 152
Query: 121 LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
+ D G + +DA++ + L + + ++E+HIEQG VLE G +GV
Sbjct: 153 RNICDAKGNSFVDAMKACGFTLPNAPLTPRQ----DIKAFVELHIEQGCVLESNGQSIGV 208
Query: 181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRX 240
V I GQ R VT+ G HAGT PM R+D + A R+C + G
Sbjct: 209 VNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYA-------FSRICHQSVEKAKRMG-- 259
Query: 241 XXXXXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQ 300
V T G++ P+ NV+PG+ TFT+D R D A +L N +
Sbjct: 260 ---------DPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRA 310
Query: 301 ICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDA 360
IC++ + ++ D V + +L A L + + V+ SGAGHDA
Sbjct: 311 ICDEMDIGIDIDLWMDEEPVPMNKEL--------VATLTELCEREKLNYRVMHSGAGHDA 362
Query: 361 MAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVLAFL 404
+ M+F+ GISH+PAE D+ A G+ LA +
Sbjct: 363 QIFAPRVPTCMIFIPSINGISHNPAERTNITDL-AEGVKTLALM 405
>pdb|2IMO|A Chain A, Crystal Structure Of Allantoate Amidohydrolase From
Escherichia Coli At Ph 4.6
pdb|2IMO|B Chain B, Crystal Structure Of Allantoate Amidohydrolase From
Escherichia Coli At Ph 4.6
Length = 423
Score = 157 bits (398), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 183/404 (45%), Gaps = 34/404 (8%)
Query: 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIF 60
SP + ++ +GL T D +GN++GR+ G + +L GSH+DTVV+ G
Sbjct: 34 YSPEWLETQQQFKKRXAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNL 93
Query: 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVS 119
DG G + A A+ LK+ + G R VEV+A ++EEG RF F GS + G+ P
Sbjct: 94 DGQFGALAAWLAIDWLKT--QYGAPLRTVEVVAXAEEEGSRFPYVFWGSKNIFGLANPDD 151
Query: 120 ALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLG 179
+ D G + +DA + + L + + ++E+HIEQG VLE G +G
Sbjct: 152 VRNICDAKGNSFVDAXKACGFTLPNAPLTPRQ----DIKAFVELHIEQGCVLESNGQSIG 207
Query: 180 VVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239
VV I GQ R VT+ G HAGT P R+D + A R+C + G
Sbjct: 208 VVNAIVGQRRYTVTLNGESNHAGTTPXGYRRDTVYA-------FSRICHQSVEKAKRXG- 259
Query: 240 XXXXXXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLY 299
V T G++ P+ NV+PG+ TFT+D R D A +L N
Sbjct: 260 ----------DPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDXR 309
Query: 300 QICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHD 359
IC++ + ++ D V + +L A L + + V SGAGHD
Sbjct: 310 AICDEXDIGIDIDLWXDEEPVPXNKEL--------VATLTELCEREKLNYRVXHSGAGHD 361
Query: 360 AMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVLAF 403
A + +F+ GISH+PAE D+ A G+ LA
Sbjct: 362 AQIFAPRVPTCXIFIPSINGISHNPAERTNITDL-AEGVKTLAL 404
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2VL1|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
Length = 474
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 181/401 (45%), Gaps = 45/401 (11%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELS---NQLYQ 300
T G I + P + N+IPGEV+FT+D R D T+L E + ++L +
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIK 344
Query: 301 ICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDA 360
I + ++S E + AV + +++A K+ ++ I SGAGHD+
Sbjct: 345 INDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQFKK------DQVRQIWSGAGHDS 398
Query: 361 MAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 401
+ M+F+ + G+SH+ E+ +++ G VL
Sbjct: 399 CQTAPHVPTSMIFIPSKDGLSHNYYEYSSPEEI-ENGFKVL 438
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|E Chain E, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|F Chain F, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|G Chain G, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|H Chain H, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
Length = 462
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 181/401 (45%), Gaps = 45/401 (11%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELS---NQLYQ 300
T G I + P + N+IPGEV+FT+D R D T+L E + ++L +
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIK 344
Query: 301 ICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDA 360
I + ++S E + AV + +++A K+ ++ I SGAGHD+
Sbjct: 345 INDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQFKK------DQVRQIWSGAGHDS 398
Query: 361 MAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 401
+ M+F+ + G+SH+ E+ +++ G VL
Sbjct: 399 CQTAPHVPTSMIFIPSKDGLSHNYYEYSSPEEI-ENGFKVL 438
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8D|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8H|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|C Chain C, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|D Chain D, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
Length = 474
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 180/401 (44%), Gaps = 45/401 (11%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + + EG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNAEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELS---NQLYQ 300
T G I + P + N+IPGEV+FT+D R D T+L E + ++L +
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIK 344
Query: 301 ICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDA 360
I + ++S E + AV + +++A K+ ++ I SGAGHD+
Sbjct: 345 INDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQFKK------DQVRQIWSGAGHDS 398
Query: 361 MAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 401
+ M+F+ + G+SH+ E+ +++ G VL
Sbjct: 399 CQTAPHVPTSMIFIPSKDGLSHNYYEYSSPEEI-ENGFKVL 438
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|B Chain B, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|C Chain C, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|D Chain D, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
Length = 474
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 180/401 (44%), Gaps = 45/401 (11%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELS---NQLYQ 300
T G I + P + N+IPGEV+FT+D D T+L E + ++L +
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEVSFTLDFAHPSDDVLATMLKEAAAEFDRLIK 344
Query: 301 ICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDA 360
I + ++S E + AV + +++A K+ ++ I SGAGHD+
Sbjct: 345 INDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQFKK------DQVRQIWSGAGHDS 398
Query: 361 MAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 401
+ M+F+ + G+SH+ E+ +++ G VL
Sbjct: 399 CQTAPHVPTSMIFIPSKDGLSHNYYEYSSPEEI-ENGFKVL 438
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
pdb|1R43|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
Length = 463
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 175/400 (43%), Gaps = 45/400 (11%)
Query: 13 RQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIIT 68
R W E G + VD +GN G N + GSHLDT +AG +DG LG++
Sbjct: 74 RDWFTNECESLGCKVKVDKIGNXFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVLA 132
Query: 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRVS 124
+ L+ K + V V+ + +EEG RF + GS+ + L + V
Sbjct: 133 GLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLXSVG 190
Query: 125 DKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGI 184
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G+
Sbjct: 191 EDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTGV 246
Query: 185 AGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXX 244
KVTV G HAGT P +R+D + +++ IV + +
Sbjct: 247 QAYNWQKVTVHGVGAHAGTTPWRLRKDALLXSSKXIVAASEIAQRHNGLF---------- 296
Query: 245 XXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELS---NQLYQI 301
T G I + P + N+IPGEV+FT+D R D T L E + ++L +I
Sbjct: 297 ----------TCGIIDAKPYSVNIIPGEVSFTLDFRHPSDDVLATXLKEAAAEFDRLIKI 346
Query: 302 CEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAM 361
+ ++S E + AV + +++A K+ ++ I SGAGHD+
Sbjct: 347 NDGGALSYESETLQVSPAVNFHEVCIECVSRSAFAQFKK------DQVRQIWSGAGHDSC 400
Query: 362 AMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 401
+ +F+ + G+SH+ E+ +++ G VL
Sbjct: 401 QTAPHVPTSXIFIPSKDGLSHNYYEYSSPEEI-ENGFKVL 439
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 20/149 (13%)
Query: 179 GVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDG 238
G VQ G+ K+ V+G GH G+ P M D + A + + L+ +
Sbjct: 179 GYVQ--TGRAFFKLKVQGKGGH-GSSP-HMANDAIVAGSYFVTALQTVVSR--------- 225
Query: 239 RXXXXXXXXXXXXXVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQL 298
V T+G NVI V D+R + DA + T+ E+
Sbjct: 226 ------RLSPFETGVVTIGSFDGK-GQFNVIKDVVEIEGDVRGLTDATKATIEKEIKRLS 278
Query: 299 YQICEKRSVSCIVERKHDANAVMCDADLS 327
+ + V+C +E D A+ D + +
Sbjct: 279 KGLEDMYGVTCTLEYNDDYPALYNDPEFT 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,363,846
Number of Sequences: 62578
Number of extensions: 440897
Number of successful extensions: 1077
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 21
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)