Query 015342
Match_columns 408
No_of_seqs 112 out of 1094
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:24:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1.8E-54 3.9E-59 425.5 30.4 362 1-397 75-437 (437)
2 KOG1304 Amino acid transporter 100.0 3.8E-51 8.2E-56 395.5 25.1 349 2-394 85-449 (449)
3 PTZ00206 amino acid transporte 100.0 2.2E-51 4.8E-56 413.9 24.1 361 1-395 97-465 (467)
4 PLN03074 auxin influx permease 100.0 7.4E-45 1.6E-49 365.1 25.6 358 1-408 83-465 (473)
5 PF01490 Aa_trans: Transmembra 100.0 5.8E-47 1.2E-51 377.8 -6.1 363 1-391 40-408 (409)
6 KOG1305 Amino acid transporter 100.0 7.9E-40 1.7E-44 320.4 24.8 360 2-397 44-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 5.5E-41 1.2E-45 307.1 5.7 368 1-404 153-524 (524)
8 COG0814 SdaC Amino acid permea 99.9 1.1E-23 2.5E-28 208.9 26.9 355 2-387 47-408 (415)
9 TIGR00837 araaP aromatic amino 99.7 6.8E-15 1.5E-19 145.6 23.8 313 2-362 35-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.6 1.3E-12 2.8E-17 129.2 26.8 313 2-364 41-367 (394)
11 PRK15132 tyrosine transporter 99.5 1.9E-11 4.1E-16 120.6 26.3 311 2-363 41-363 (403)
12 PRK10483 tryptophan permease; 99.4 1.8E-10 3.8E-15 113.5 26.6 309 2-362 49-373 (414)
13 PRK09664 tryptophan permease T 99.4 6.1E-10 1.3E-14 109.6 26.4 311 2-362 47-374 (415)
14 PRK13629 threonine/serine tran 99.3 3.5E-09 7.7E-14 104.4 27.3 349 2-382 57-434 (443)
15 TIGR00814 stp serine transport 99.2 1.3E-09 2.9E-14 107.7 21.4 322 7-364 46-381 (397)
16 PRK10655 potE putrescine trans 98.6 0.0001 2.2E-09 74.5 29.1 56 169-227 190-245 (438)
17 PRK10746 putative transport pr 98.6 8.1E-05 1.7E-09 75.7 28.5 58 168-228 200-257 (461)
18 PRK10249 phenylalanine transpo 98.5 0.00019 4.1E-09 72.9 28.5 55 169-226 210-264 (458)
19 PRK10644 arginine:agmatin anti 98.5 0.00022 4.9E-09 72.1 29.0 56 169-227 192-247 (445)
20 PRK11021 putative transporter; 98.5 0.00026 5.7E-09 70.8 29.1 56 167-225 176-231 (410)
21 COG1113 AnsP Gamma-aminobutyra 98.5 3.9E-05 8.4E-10 75.4 21.9 323 2-361 53-388 (462)
22 TIGR03810 arg_ornith_anti argi 98.4 0.00035 7.5E-09 71.2 28.6 59 169-231 196-254 (468)
23 TIGR00909 2A0306 amino acid tr 98.4 0.0004 8.6E-09 69.9 28.5 206 3-227 44-251 (429)
24 TIGR00913 2A0310 amino acid pe 98.4 0.00066 1.4E-08 69.3 29.9 177 32-225 69-251 (478)
25 PRK10238 aromatic amino acid t 98.4 0.00039 8.5E-09 70.6 27.9 197 3-222 53-251 (456)
26 PRK15049 L-asparagine permease 98.3 0.00068 1.5E-08 69.7 28.3 61 168-231 220-280 (499)
27 TIGR01773 GABAperm gamma-amino 98.3 0.00094 2E-08 67.7 29.1 203 3-229 53-259 (452)
28 TIGR00905 2A0302 transporter, 98.3 0.0011 2.5E-08 67.5 29.6 178 34-228 76-255 (473)
29 PRK10580 proY putative proline 98.3 0.00086 1.9E-08 68.1 28.5 54 169-225 200-253 (457)
30 PRK10197 gamma-aminobutyrate t 98.3 0.00067 1.5E-08 68.7 27.4 54 169-225 182-235 (446)
31 PRK11049 D-alanine/D-serine/gl 98.3 0.0014 3.1E-08 66.7 29.7 56 169-227 212-267 (469)
32 PRK11387 S-methylmethionine tr 98.3 0.00097 2.1E-08 68.0 27.8 61 168-231 206-266 (471)
33 PRK10435 cadB lysine/cadaverin 98.3 0.0012 2.6E-08 66.7 28.1 61 167-230 186-246 (435)
34 TIGR00908 2A0305 ethanolamine 98.2 0.00068 1.5E-08 68.5 25.6 171 32-224 72-244 (442)
35 PF13520 AA_permease_2: Amino 98.2 0.00079 1.7E-08 67.6 24.2 183 32-233 63-248 (426)
36 PRK11357 frlA putative fructos 98.2 0.00093 2E-08 67.6 24.3 55 168-225 195-249 (445)
37 TIGR00911 2A0308 L-type amino 98.1 0.0014 3.1E-08 67.3 25.1 58 167-227 234-291 (501)
38 TIGR03813 put_Glu_GABA_T putat 98.1 0.0016 3.5E-08 66.5 24.5 53 176-231 202-254 (474)
39 TIGR00907 2A0304 amino acid pe 98.1 0.0054 1.2E-07 62.7 28.4 60 169-231 218-277 (482)
40 TIGR00906 2A0303 cationic amin 98.0 0.003 6.4E-08 65.8 25.1 56 168-226 231-286 (557)
41 TIGR00930 2a30 K-Cl cotranspor 98.0 0.0069 1.5E-07 66.7 28.0 179 36-225 148-334 (953)
42 TIGR00912 2A0309 spore germina 97.9 0.0021 4.4E-08 63.1 21.6 199 2-234 41-241 (359)
43 PRK10836 lysine transporter; P 97.9 0.02 4.3E-07 58.7 28.4 58 169-229 206-263 (489)
44 COG0531 PotE Amino acid transp 97.8 0.011 2.4E-07 59.9 25.3 184 32-232 77-262 (466)
45 TIGR00910 2A0307_GadC glutamat 97.8 0.0046 9.9E-08 63.7 22.3 51 171-224 197-247 (507)
46 KOG1287 Amino acid transporter 97.7 0.0064 1.4E-07 60.9 20.8 173 170-364 206-388 (479)
47 COG3949 Uncharacterized membra 97.7 0.013 2.8E-07 55.5 20.5 99 3-121 44-142 (349)
48 TIGR03428 ureacarb_perm permea 97.4 0.19 4.1E-06 51.4 33.2 60 170-232 215-274 (475)
49 PRK15238 inner membrane transp 97.4 0.16 3.4E-06 52.2 26.6 56 168-226 211-266 (496)
50 PF03845 Spore_permease: Spore 96.9 0.037 7.9E-07 53.4 15.2 197 3-234 40-237 (320)
51 TIGR02358 thia_cytX probable h 96.7 0.8 1.7E-05 45.4 23.5 177 30-233 57-234 (386)
52 PF00324 AA_permease: Amino ac 96.6 0.013 2.7E-07 60.0 10.4 64 167-233 199-262 (478)
53 PRK11375 allantoin permease; P 96.6 1.1 2.3E-05 46.0 24.2 49 30-78 88-137 (484)
54 TIGR00800 ncs1 NCS1 nucleoside 96.4 0.41 8.9E-06 48.4 19.6 193 30-234 75-274 (442)
55 PRK09442 panF sodium/panthothe 96.2 1.8 3.9E-05 44.3 25.2 81 29-123 106-187 (483)
56 TIGR02119 panF sodium/pantothe 96.1 1.9 4.2E-05 43.9 24.4 82 29-124 105-187 (471)
57 COG1457 CodB Purine-cytosine p 96.1 1.2 2.6E-05 44.6 20.2 171 34-234 84-258 (442)
58 PRK11017 codB cytosine permeas 95.0 3.3 7.2E-05 41.3 19.4 46 30-75 70-115 (404)
59 PF00474 SSF: Sodium:solute sy 94.5 1.3 2.9E-05 44.0 15.3 83 29-125 67-151 (406)
60 KOG1289 Amino acid transporter 93.8 8.9 0.00019 39.3 21.2 66 166-234 250-315 (550)
61 KOG1286 Amino acid transporter 93.3 4.9 0.00011 41.8 16.8 56 167-225 231-286 (554)
62 TIGR00813 sss transporter, SSS 93.0 11 0.00023 37.6 23.0 81 30-124 65-146 (407)
63 COG0591 PutP Na+/proline sympo 92.9 13 0.00027 38.3 25.9 81 29-123 103-184 (493)
64 COG0833 LysP Amino acid transp 92.8 13 0.00028 38.1 24.0 195 3-222 86-285 (541)
65 PRK12488 acetate permease; Pro 91.8 18 0.0004 37.7 27.3 81 30-124 129-210 (549)
66 COG1914 MntH Mn2+ and Fe2+ tra 89.2 26 0.00056 35.1 24.7 46 31-76 77-122 (416)
67 TIGR00796 livcs branched-chain 81.9 8 0.00017 38.2 8.8 48 29-76 253-300 (378)
68 TIGR02711 symport_actP cation/ 78.5 90 0.0019 32.6 25.6 80 30-123 129-209 (549)
69 PRK15419 proline:sodium sympor 71.4 1.3E+02 0.0028 31.0 22.5 80 30-123 107-189 (502)
70 KOG2082 K+/Cl- cotransporter K 69.3 68 0.0015 34.5 11.6 163 192-384 434-619 (1075)
71 PF02133 Transp_cyt_pur: Perme 64.4 52 0.0011 33.0 10.0 49 30-78 70-118 (440)
72 PF05525 Branch_AA_trans: Bran 64.2 88 0.0019 31.5 11.2 86 30-131 260-345 (427)
73 COG1114 BrnQ Branched-chain am 59.7 75 0.0016 31.7 9.5 79 30-122 262-340 (431)
74 PF02554 CstA: Carbon starvati 59.3 45 0.00097 32.7 7.8 44 30-73 113-156 (376)
75 PRK00701 manganese transport p 56.8 2.3E+02 0.0049 28.7 24.7 46 30-75 93-138 (439)
76 TIGR02121 Na_Pro_sym sodium/pr 53.1 2.7E+02 0.0058 28.5 25.2 81 29-123 102-185 (487)
77 PRK10484 putative transporter; 49.0 3.2E+02 0.007 28.2 24.6 30 29-58 99-128 (523)
78 KOG3832 Predicted amino acid t 44.3 85 0.0018 28.1 6.5 45 31-75 130-174 (319)
79 TIGR00796 livcs branched-chain 43.8 3.3E+02 0.0072 26.9 20.3 41 184-227 197-241 (378)
80 PRK09395 actP acetate permease 42.8 4.1E+02 0.0089 27.6 28.7 80 30-123 131-211 (551)
81 PRK13183 psbN photosystem II r 40.7 31 0.00066 22.8 2.4 30 204-233 4-33 (46)
82 CHL00020 psbN photosystem II p 34.7 33 0.00071 22.3 1.8 27 207-233 4-30 (43)
83 KOG4812 Golgi-associated prote 33.8 1E+02 0.0023 28.1 5.5 77 316-397 160-253 (262)
84 PRK15433 branched-chain amino 33.6 1.5E+02 0.0032 30.0 7.2 66 32-111 266-331 (439)
85 PF02468 PsbN: Photosystem II 31.2 42 0.00091 21.9 1.9 26 208-233 5-30 (43)
86 PRK09400 secE preprotein trans 31.1 70 0.0015 22.6 3.2 30 193-228 23-52 (61)
87 TIGR00327 secE_euk_arch protei 30.5 74 0.0016 22.5 3.2 30 194-229 20-49 (61)
88 PRK12768 CysZ-like protein; Re 30.0 4.4E+02 0.0096 24.2 9.4 27 192-223 10-36 (240)
89 PRK09950 putative transporter; 28.4 4.8E+02 0.01 27.0 10.0 87 58-145 409-497 (506)
90 TIGR00909 2A0306 amino acid tr 28.4 4.1E+02 0.0089 26.3 9.6 48 31-78 264-311 (429)
91 PF01102 Glycophorin_A: Glycop 25.1 1.3E+02 0.0028 24.6 4.2 28 373-400 66-93 (122)
92 PF05805 L6_membrane: L6 membr 24.4 2.1E+02 0.0045 25.5 5.7 63 334-396 45-117 (195)
93 cd08762 Cyt_b561_CYBASC3 Verte 23.8 2E+02 0.0042 25.2 5.4 67 202-272 67-133 (179)
94 PF01566 Nramp: Natural resist 21.9 7.3E+02 0.016 24.0 19.6 78 31-122 42-121 (358)
95 PLN02680 carbon-monoxide oxyge 21.6 3E+02 0.0066 25.2 6.4 67 202-272 76-142 (232)
96 KOG1619 Cytochrome b [Energy p 21.6 2.4E+02 0.0051 25.9 5.6 82 185-273 71-152 (245)
97 TIGR00842 bcct choline/carniti 21.6 7.3E+02 0.016 25.2 9.7 68 58-125 363-432 (453)
98 PF03839 Sec62: Translocation 21.5 1.6E+02 0.0035 26.8 4.6 22 101-123 123-145 (224)
99 PLN02351 cytochromes b561 fami 21.2 2.5E+02 0.0054 25.9 5.7 73 191-272 73-145 (242)
100 PF11057 Cortexin: Cortexin of 20.7 1E+02 0.0022 22.7 2.5 36 2-37 32-68 (81)
101 TIGR03648 Na_symport_lg probab 20.3 9.8E+02 0.021 24.8 31.8 80 30-123 94-174 (552)
102 PF07125 DUF1378: Protein of u 20.1 2.4E+02 0.0052 19.4 4.0 28 371-398 8-35 (59)
103 KOG1289 Amino acid transporter 20.1 1E+03 0.022 24.9 11.3 48 31-78 325-372 (550)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-54 Score=425.45 Aligned_cols=362 Identities=37% Similarity=0.669 Sum_probs=317.1
Q ss_pred ChhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcc
Q 015342 1 MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNC 80 (408)
Q Consensus 1 l~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~ 80 (408)
|++.++++.||..||.+|.+..++..++|.++|.|+++++||+++++++.+++.+.++|.|+.|++..||++..+.+..|
T Consensus 75 Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~ 154 (437)
T KOG1303|consen 75 LLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVS 154 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999888888889999999999999999999999999999999999999999999999998765
Q ss_pred ccCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccccc
Q 015342 81 FHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGT 160 (408)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (408)
.+.. ..+.+.|+++++++.+|++++||+++++++|..|.++++.|..+.+..++.++.+...++.+....+
T Consensus 155 ~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~--- 225 (437)
T KOG1303|consen 155 LNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLG--- 225 (437)
T ss_pred Cccc------cccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCC---
Confidence 4321 2346778999999999999999999999999999999998888888877777655432222221110
Q ss_pred ccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCcccc
Q 015342 161 VTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLT 240 (408)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~ 240 (408)
.. .. .|+++|++.|+|++|.++||||++||+| ++|+|++..++.+++.+|+.+++.||++|||++++|++.
T Consensus 226 ~~--~~---~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~ 296 (437)
T KOG1303|consen 226 TI--PT---VFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILL 296 (437)
T ss_pred CC--cc---hhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhh
Confidence 01 10 1799999999999999999999999999 779999999999999999999999999999999999999
Q ss_pred ccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchhhHHHHHHHHH
Q 015342 241 GFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVI 320 (408)
Q Consensus 241 n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~ 320 (408)
|++ .|.|....+|+++.+|++.+|++..+|.++.+|+....++++ +.. +....|.+.|+.+++
T Consensus 297 s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~~-------------~~~~~R~~~Rt~~v~ 359 (437)
T KOG1303|consen 297 SLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FKK-------------RSLVLRLLVRTFFVA 359 (437)
T ss_pred ccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--ccc-------------cccceeeehhhHHHH
Confidence 974 689999999999999999999999999999999998765322 100 124689999999999
Q ss_pred HHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 015342 321 LTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQML-SMACLVLSIIAGAGSIVGVVND 397 (408)
Q Consensus 321 ~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~~~~~~~~~~~~-~~~g~~~~v~gt~~si~~ii~~ 397 (408)
.+..+|+.+|+|+++++++||+...++++++|+++|++.+|+++++.+|+.++.+ .++|+++++.++.++++.++.+
T Consensus 360 ~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 360 VTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999988888 7999999999999999988763
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-51 Score=395.51 Aligned_cols=349 Identities=17% Similarity=0.273 Sum_probs=290.7
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHH----------ccCCcceehHHHHHHHHhhhHHHHHHhhhhh
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSI----------LGGAKVKACGLIQYLNLFGIAIGYTIAASIS 71 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~----------~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~ 71 (408)
+++|.++.||+++|++|.++.+.+.+....+|+|.++.+ +||++|.++++++.++|+|.|++|+++++|+
T Consensus 85 ~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~n 164 (449)
T KOG1304|consen 85 VFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATN 164 (449)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhh
Confidence 578999999999999997654433333457888887654 5678899999999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 015342 72 MMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKG 151 (408)
Q Consensus 72 l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~ 151 (408)
++++.+. +..+ +++.+.|+.+..+..+|++++||+|.|+.+|++|+++.++ ++++..++..++.++..
T Consensus 165 l~~i~~~---~~~~-----~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~----g~~ii~~y~~~~~~~~~ 232 (449)
T KOG1304|consen 165 LKQIVDE---HSPG-----VLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILV----GLAIIMYYLVQDLPPTS 232 (449)
T ss_pred HHHHHhc---cCCC-----CccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHH----HHHHHHHHHHhccCCcc
Confidence 9999872 1111 4567778888878889999999999999999999987664 23333344444433221
Q ss_pred CccccccccccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhH---HHHHHHHHHHHHHHHhhhhhhhh
Q 015342 152 SLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMK---KAAKLSIAVTTAFYMLCGCMGYA 228 (408)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~---~~~~~s~~~~~~~Y~~vg~~gY~ 228 (408)
+.+ ...+..+...++|+.+|||+|+.+++|++++||+| ++|. +++..+|.+++++|...|++||+
T Consensus 233 ~~~--------~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl 300 (449)
T KOG1304|consen 233 DLP--------AVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYL 300 (449)
T ss_pred ccc--------cccchhhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 111 12223456688999999999999999999999999 9999 99999999999999999999999
Q ss_pred ccCCCCCCccccccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccc
Q 015342 229 AFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLN 308 (408)
Q Consensus 229 ~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 308 (408)
+|||++++.|++|+| + +|+.+.+++.+.+.+..+||||.+|..+.+|+.+.+|..+ + +.+
T Consensus 301 ~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~------~-----------~~~ 360 (449)
T KOG1304|consen 301 AFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE------N-----------RKK 360 (449)
T ss_pred hccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc------c-----------hhH
Confidence 999999999999985 4 8899999999999999999999999999999988765321 1 013
Q ss_pred hhhHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccC---ccchhHHHHHHHHHHHHHHHHH
Q 015342 309 LFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKIT---KWSTRWMCLQMLSMACLVLSII 385 (408)
Q Consensus 309 ~~r~~~r~~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~---~~~~~~~~~~~~~~~g~~~~v~ 385 (408)
+....+|+.+++++..+|..+||++++++++||++++++.+++|++++++.+.++ ++.|+++.+.++.++|++.++.
T Consensus 361 ~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~ 440 (449)
T KOG1304|consen 361 LLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVY 440 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHH
Confidence 6677899999999999999999999999999999999999999999999998543 4456778889999999999999
Q ss_pred HHHHHHHHH
Q 015342 386 AGAGSIVGV 394 (408)
Q Consensus 386 gt~~si~~i 394 (408)
|||+|+.++
T Consensus 441 Gty~si~~i 449 (449)
T KOG1304|consen 441 GTYTSIKEI 449 (449)
T ss_pred HHhhhhhcC
Confidence 999998763
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.2e-51 Score=413.86 Aligned_cols=361 Identities=13% Similarity=0.185 Sum_probs=272.3
Q ss_pred ChhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcc
Q 015342 1 MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNC 80 (408)
Q Consensus 1 l~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~ 80 (408)
+++++.++.||+++|.+|.++ .+..||+|++++++||++++++++.+.++++|.|++|++++||++..+++..-
T Consensus 97 lil~a~ls~ys~~lL~~~~~~------~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~ 170 (467)
T PTZ00206 97 LIIITAMTIFSIYALGVAADK------TNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTN 170 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 357899999999999998763 22569999999999999999999999999999999999999999998876310
Q ss_pred ccCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccccc
Q 015342 81 FHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGT 160 (408)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (408)
.+ +..+.. ..++..+.+++.++++|++++|++++|+++|.+|+++.+....++++..+.++.+.. .++.+.+.
T Consensus 171 ~~-~~~~~~-~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~-----~~~~~~~~ 243 (467)
T PTZ00206 171 AP-DFLKQK-SGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPEN-----IKNVSVGK 243 (467)
T ss_pred cc-chhhhc-cCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccc-----ccccccCC
Confidence 00 000000 112233445566788999999999999999999976544322222222222211110 01111000
Q ss_pred -----ccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCC
Q 015342 161 -----VTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAP 235 (408)
Q Consensus 161 -----~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~ 235 (408)
....+...+.+.++|+++|||.||.+++|+++||||| +.+||.+++..++.+++++|..+|++||++||++++
T Consensus 244 ~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~ 321 (467)
T PTZ00206 244 DDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVT 321 (467)
T ss_pred CCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 0111222457899999999999999999999999998 569999999999999999999999999999999999
Q ss_pred CccccccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchhhHHHH
Q 015342 236 GNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWR 315 (408)
Q Consensus 236 ~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r 315 (408)
+|+++|++. ..+....++++++.+.++.+||++.+|+|+.+++.+..+ .. + .+ .+++...+
T Consensus 322 ~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~-----~----~~-------~~~~~~~~ 382 (467)
T PTZ00206 322 GSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD--AR-----K----VA-------FWKHCIAV 382 (467)
T ss_pred hHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC--cc-----c----Cc-------hhhHHHHH
Confidence 999999831 223455678888999999999999999999999876332 10 1 01 24455566
Q ss_pred HHHHHHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhc--cCccc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015342 316 SCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKK--ITKWS-TRWMCLQMLSMACLVLSIIAGAGSIV 392 (408)
Q Consensus 316 ~~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~--~~~~~-~~~~~~~~~~~~g~~~~v~gt~~si~ 392 (408)
..++++++++|+.+|+++.+++++||++++.++|++|+++|+|... .++.+ .+|+.+++++++|++.+++|||+|++
T Consensus 383 ~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~ 462 (467)
T PTZ00206 383 VTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIW 462 (467)
T ss_pred HHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhh
Confidence 6667788999999999999999999999999999999999999531 11222 23456788999999999999999999
Q ss_pred HHH
Q 015342 393 GVV 395 (408)
Q Consensus 393 ~ii 395 (408)
+.+
T Consensus 463 ~~~ 465 (467)
T PTZ00206 463 GVT 465 (467)
T ss_pred HHh
Confidence 876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=7.4e-45 Score=365.13 Aligned_cols=358 Identities=16% Similarity=0.201 Sum_probs=277.5
Q ss_pred ChhHHHHHHHHHHHHhhcccc---CCCcCCc--c--cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHH
Q 015342 1 MFLFSFVTYYTSSLLTDCYRT---ADPVFGK--R--NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMM 73 (408)
Q Consensus 1 l~~~~~~~~ys~~lL~~~~~~---~~~~~~~--~--~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~ 73 (408)
+++.++++.||.++|.+|..+ +++.++. + ..+|.|+++..+||+++.+..+...+++++.|+.|++..++++.
T Consensus 83 lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~ 162 (473)
T PLN03074 83 QIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIY 162 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhh
Confidence 367899999999999987422 2222222 1 13789999999999999999999999999999999998888766
Q ss_pred HHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCc
Q 015342 74 AIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSL 153 (408)
Q Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~ 153 (408)
.+.. ..+.+.|+++++++++|++++|++++++++|.+|..+++.+...++..++.+ +.+
T Consensus 163 ~l~~-------------~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~---~~~----- 221 (473)
T PLN03074 163 YIND-------------NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSH---GQV----- 221 (473)
T ss_pred hhCC-------------CcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCC-----
Confidence 5411 2346677888888899999999999999999999776553222222222211 111
Q ss_pred cccccccccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 154 TGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
++.+. +...+....+.++++++|||+||.++|||++||||| ++|+++...+...++.+|..+|+.||++|||+
T Consensus 222 ~~~~~---~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 222 EGVKH---SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred CCCCC---CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 11110 012234456778889999999999999999999999 89999999999999999999999999999999
Q ss_pred CC--CccccccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchhh
Q 015342 234 AP--GNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFR 311 (408)
Q Consensus 234 v~--~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r 311 (408)
++ ++.++|.| .+. ...++++...+++..+||++.+|+.+.+|+....+ +. + ....|
T Consensus 295 ~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~-----k------------~~~~r 352 (473)
T PLN03074 295 LLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT-----K------------SICLR 352 (473)
T ss_pred hhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc-----c------------cHHHH
Confidence 76 45676654 222 45688999999999999999999999998875321 10 1 13678
Q ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccC-------------ccchh--HHHHHHHH
Q 015342 312 LVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKIT-------------KWSTR--WMCLQMLS 376 (408)
Q Consensus 312 ~~~r~~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~-------------~~~~~--~~~~~~~~ 376 (408)
...|+.++++++++|+.+|+|+++++|+||++++.++|++|+++|++.++++ .++++ .+.|++++
T Consensus 353 ~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ii 432 (473)
T PLN03074 353 ALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVV 432 (473)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHH
Confidence 9999999999999999999999999999999999999999999999866332 11222 25677777
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhhhccccCccCC
Q 015342 377 MACLVL-SIIAGAGSIVGVVNDVKAYTPFKTTY 408 (408)
Q Consensus 377 ~~g~~~-~v~gt~~si~~ii~~~~~~~~f~~~~ 408 (408)
+++.++ .+.|+|+|++++++++++++.|++-|
T Consensus 433 v~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~ 465 (473)
T PLN03074 433 VWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCY 465 (473)
T ss_pred HhhhhHhhccchHHHHHHHHHhhhhhhhhhhhc
Confidence 654444 68999999999999999999998754
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=5.8e-47 Score=377.83 Aligned_cols=363 Identities=25% Similarity=0.339 Sum_probs=282.5
Q ss_pred ChhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcc
Q 015342 1 MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNC 80 (408)
Q Consensus 1 l~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~ 80 (408)
+++++.++.||.++|.+|+++.+ .+++..+|+|++++++||++++++++++.++++|.|++|+++.+|++..+.+...
T Consensus 40 l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~ 117 (409)
T PF01490_consen 40 LVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFF 117 (409)
T ss_pred HHHHHHHHHHhhhhhhccccccc--cccccccccccccccccccccccccchheeccccccceeEEEeeeeeeccccccc
Confidence 46789999999999999987532 2345789999999999999999999999999999999999999999999876421
Q ss_pred ccCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccccc
Q 015342 81 FHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGT 160 (408)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (408)
.+ ...++..+.++.+++++|++++|++++|++.|.+|.++.+.+..+.+.. .....+.++.+.+.++
T Consensus 118 ~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 184 (409)
T PF01490_consen 118 GD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIY-IISYGPGEPSGVPSPP----- 184 (409)
T ss_pred cc-------ccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecce-eeeeeccccccccccc-----
Confidence 10 1234666777788889999999999999999999976544321112111 1111111111111111
Q ss_pred ccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchh-hhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCccc
Q 015342 161 VTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAES-KTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLL 239 (408)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~-~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il 239 (408)
.....+.++.+.++|+++|||.||.++||+++|||+| ++ ++++++...++.+++++|..+|.+||++||+++++|++
T Consensus 185 ~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il 262 (409)
T PF01490_consen 185 VWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNIL 262 (409)
T ss_pred ccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhh
Confidence 1123455778899999999999999999999999999 23 34559999999999999999999999999999999999
Q ss_pred cccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchhhHHHHHHHH
Q 015342 240 TGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFV 319 (408)
Q Consensus 240 ~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v 319 (408)
+|++ +.++...++++++.++++.+||++.+|.++.+|+.+.++.+..+...++ +.+.++.|..+|++++
T Consensus 263 ~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 331 (409)
T PF01490_consen 263 LNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKN---------TPSSRWLRYLIRIILV 331 (409)
T ss_pred hcCC--CcccccccccccchhhhhhccccccchhHhhhhhheecccccccccccc---------ccccceeeeeeecchh
Confidence 9985 3346778899999999999999999999999999875420000000000 0112467889999999
Q ss_pred HHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCccchhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 015342 320 ILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWM-----CLQMLSMACLVLSIIAGAGSI 391 (408)
Q Consensus 320 ~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~~~~~~~-----~~~~~~~~g~~~~v~gt~~si 391 (408)
+.++++|+.+||++++++++||++++.++|++|+++|+|.+++++++.+++ ..+.+.++|++.++.|+++++
T Consensus 332 ~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 332 LLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 999999999999999999999999999999999999999997765443332 235666788999999998875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-40 Score=320.40 Aligned_cols=360 Identities=20% Similarity=0.278 Sum_probs=276.2
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
+.+|.++.++.+++.+|.++ .+. .+|++++++++|+.++....+.......| |++|++++||.++.+......
T Consensus 44 ~~~a~~s~~sl~~l~~~a~~----~~~--~ty~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~ 116 (411)
T KOG1305|consen 44 VLSAFLSLLSLYLLSKCAKK----SGE--RTYSSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFL 116 (411)
T ss_pred HHHHHHHHhHHHHHHHhhhh----cCC--CCHHHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhccc
Confidence 57899999999999999864 222 39999999999999988888888888888 899999999999977654211
Q ss_pred cCCCCCCCCccCCch-hHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccccc
Q 015342 82 HESGGNNPCHMSSNP-YMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGT 160 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (408)
.+++.+. +.+++. |++...++.+||++.|++++|++.|.++.+..+.++.+.+ ++....+.. ..+..+.
T Consensus 117 ~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv----~~~~~~~~~---~~~~~~~- 186 (411)
T KOG1305|consen 117 DEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVV----YKYFQGPCA---LGRLSYL- 186 (411)
T ss_pred ccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHhcccc---cCCcccc-
Confidence 1111000 123443 5666778889999999999999999998765443322222 222221110 0111100
Q ss_pred ccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCcccc
Q 015342 161 VTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLT 240 (408)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~ 240 (408)
.+.....++.+.++|+++|||.||.++.|+++||+|| +++++.++.+.+...+.++|..+|++||+.|||++.+|++.
T Consensus 187 ~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~ 264 (411)
T KOG1305|consen 187 VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLH 264 (411)
T ss_pred cCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHh
Confidence 1112222678899999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred ccCcCCCh----HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchhhHHHHH
Q 015342 241 GFGFYNPF----WLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRS 316 (408)
Q Consensus 241 n~~~~~~~----~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~ 316 (408)
|++..... +....++..+.++.+..+|+..+|+|..+++.+.++.|+. ++ .++.++.+++.
T Consensus 265 ~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~----~~-----------~s~~r~~~itl 329 (411)
T KOG1305|consen 265 NYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGL----TS-----------FSGKRHFVITL 329 (411)
T ss_pred cCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCC----CC-----------ccceehhHHHH
Confidence 98632222 1346789999999999999999999999998876553321 01 01244556667
Q ss_pred HHHHHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015342 317 CFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVN 396 (408)
Q Consensus 317 ~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~~~~~~~~~~~~~~~g~~~~v~gt~~si~~ii~ 396 (408)
.++..+.+.|+.+|+++++++++||++++.++|++|+++|+|..|+ ++++....+...++++..++.|++..+.++..
T Consensus 330 ~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 407 (411)
T KOG1305|consen 330 LLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLA 407 (411)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7789999999999999999999999999999999999999999976 33344444677888999999988888877765
Q ss_pred h
Q 015342 397 D 397 (408)
Q Consensus 397 ~ 397 (408)
+
T Consensus 408 ~ 408 (411)
T KOG1305|consen 408 K 408 (411)
T ss_pred c
Confidence 4
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-41 Score=307.08 Aligned_cols=368 Identities=17% Similarity=0.220 Sum_probs=295.6
Q ss_pred ChhHHHHHHHHHHHHhhccccCCCcCCc---ccccHHHHHHHHccCC-cceehHHHHHHHHhhhHHHHHHhhhhhHHHHH
Q 015342 1 MFLFSFVTYYTSSLLTDCYRTADPVFGK---RNYTYMDAVRSILGGA-KVKACGLIQYLNLFGIAIGYTIAASISMMAIK 76 (408)
Q Consensus 1 l~~~~~~~~ys~~lL~~~~~~~~~~~~~---~~~sY~dl~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~ 76 (408)
|+..|.+++||.++|++|..+.++ .|. .++||.++|+.+++|. |.+++.+.+.+.+..+|+.|++..||.+..-+
T Consensus 153 mvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~f 231 (524)
T KOG4303|consen 153 MVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCF 231 (524)
T ss_pred HHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccC
Confidence 577899999999999999865333 222 2579999999999997 56999999999999999999999999887754
Q ss_pred hhccccCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccc
Q 015342 77 RSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGI 156 (408)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ 156 (408)
+. . ..+.+-|+++.+..++|-+++|+++..+.+|++++++-++.-.+++..|+.+. . +.++..+
T Consensus 232 P~-----~------svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~-~----dW~wskv 295 (524)
T KOG4303|consen 232 PG-----L------SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV-S----DWSWSKV 295 (524)
T ss_pred CC-----C------CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h----hccceeE
Confidence 42 1 22466788888889999999999999999999998887776666666555432 1 2222222
Q ss_pred ccccccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Q 015342 157 SIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPG 236 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~ 236 (408)
+...+......++|+++|+|..|..+|+++..|++| ++|..++.++.....++-..+|..||++||+++|.
T Consensus 296 -----~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tqe 366 (524)
T KOG4303|consen 296 -----TFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQE 366 (524)
T ss_pred -----EEEEEcccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHH
Confidence 122223334577999999999999999999999999 89999999999999999999999999999999999
Q ss_pred ccccccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchhhHHHHH
Q 015342 237 NLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRS 316 (408)
Q Consensus 237 ~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~ 316 (408)
.|.+|+| .+....++|+..++..+.|||+-.+.+.+.+|+-+.+..|+..|..- ++ |. |+. +...+.+|.
T Consensus 367 vItnnLp---~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpsc-ys---~D-g~L--k~WgltlR~ 436 (524)
T KOG4303|consen 367 VITNNLP---NQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSC-YS---PD-GSL--KEWGLTLRI 436 (524)
T ss_pred HHhcCCC---ccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCcee-eC---CC-cch--hhheeeeee
Confidence 9999974 33466789999999999999998888888888877665566555221 10 00 121 233456799
Q ss_pred HHHHHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015342 317 CFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVN 396 (408)
Q Consensus 317 ~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~~~~~~~~~~~~~~~g~~~~v~gt~~si~~ii~ 396 (408)
++++.+.+.|+.+|++.-+++++|+++++.++|+.|++||++++.+.....++..+..+++.|...+|.|.|-|..++|+
T Consensus 437 ~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~ 516 (524)
T KOG4303|consen 437 ILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIR 516 (524)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHH
Confidence 99999999999999999999999999999999999999999998554433455567888889999999999999999999
Q ss_pred hhhccccC
Q 015342 397 DVKAYTPF 404 (408)
Q Consensus 397 ~~~~~~~f 404 (408)
+++...+|
T Consensus 517 A~~~~~~~ 524 (524)
T KOG4303|consen 517 AINSADSD 524 (524)
T ss_pred HHhccCCC
Confidence 99886553
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.93 E-value=1.1e-23 Score=208.93 Aligned_cols=355 Identities=14% Similarity=0.186 Sum_probs=238.1
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
++++.++++|.+++.++.++. +++..+|.|++++.+||++++++++...+.++|.+.+|.+..||.+++.++.. +
T Consensus 47 ~i~~~~t~~s~~~l~~~~~~~----~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~-~ 121 (415)
T COG0814 47 IIAWPLTYLSLLLLLEALLSS----PNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQ-F 121 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhh-c
Confidence 578899999999999998652 11125999999999999999999999999999999999999999999998742 1
Q ss_pred cCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccc
Q 015342 82 HESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTV 161 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (408)
+.+ ..+++...+++..++.++++.++...++..|.+.......+.. .+.+. ....+ ...... . +
T Consensus 122 ---~~~---~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~----l~~~~-~~~~~-~~~l~~--~--~ 185 (415)
T COG0814 122 ---GLN---PLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVL----LVVYL-IPHWN-PANLFA--L--P 185 (415)
T ss_pred ---ccC---CcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH----HHHHH-hcccC-HHHHhc--c--c
Confidence 111 1346666677777788899999999999999888665433221 11221 11110 000000 0 0
Q ss_pred cc-hhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCcccc
Q 015342 162 TQ-TQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLT 240 (408)
Q Consensus 162 ~~-~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~ 240 (408)
.. .........++|+++|||+||++++++++||+++ ++++.+|+...+..+..++|..+++++|..+|+.+++|++.
T Consensus 186 ~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~ 263 (415)
T COG0814 186 SASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILA 263 (415)
T ss_pred ccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 11 1233356689999999999999999999999988 34459999999999999999999999999999999999999
Q ss_pred ccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh---CCC-CccCCccccccCCCCCCcccchhh--HHH
Q 015342 241 GFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAES---WPD-SYFLSKEFKIPVPGLLPYKLNLFR--LVW 314 (408)
Q Consensus 241 n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~---~~~-~~~~~~~~~~~~p~~~~~~~~~~r--~~~ 314 (408)
+++ +..... .+..........+++.+.+|.+......++.. ++. .+...++... + ++.+ ...+ ...
T Consensus 264 ~~~--~~~~~l-~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~--~--~r~~-~~~~~~~~~ 335 (415)
T COG0814 264 AKE--QNISLL-SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSK--P--GRKK-TGLLTFLPP 335 (415)
T ss_pred ccC--chHHHH-HHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCc--c--cchh-hhhhhHHHH
Confidence 973 222211 22233333344556666655554322211100 000 0000000000 0 0111 1222 222
Q ss_pred HHHHHHHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHH
Q 015342 315 RSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAG 387 (408)
Q Consensus 315 r~~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~~~~~~~~~~~~~~~g~~~~v~gt 387 (408)
....++.....+...|+.+.+++.+|+..+..+.++.|...+.|....+.++..+....++.++|+..++.-.
T Consensus 336 ~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~ 408 (415)
T COG0814 336 LIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPF 408 (415)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHH
Confidence 3344567788889999999999999999999999999999988876444333222334566667766665433
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.69 E-value=6.8e-15 Score=145.59 Aligned_cols=313 Identities=14% Similarity=0.105 Sum_probs=203.5
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
++.+..+.++..++.++..+. + +..+|.|.+++++||++++++.+...+.+++.+.+|.+..++.+..+++.. .
T Consensus 35 i~~~~~~~~~~l~~~el~~~~-p----~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~-~ 108 (381)
T TIGR00837 35 ILLWFLMLHSGLLLLEVYLTY-P----GGASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEY-F 108 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-C----CCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHh-c
Confidence 457788899999999986532 2 146899999999999999999999999999999999999999998887631 1
Q ss_pred cCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccc
Q 015342 82 HESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTV 161 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (408)
+. ..+.....+++.+++.++. .+..+..+.++.+.++..+....+.+.. +....+. .+..+..
T Consensus 109 ---~~----~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~----~~~~~~~-~~~~~~~---- 171 (381)
T TIGR00837 109 ---GF----PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSG----LLPHVKG-DLLLDVA---- 171 (381)
T ss_pred ---CC----CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHH----HHhhccH-HHHhcCc----
Confidence 10 1222323333333434443 4566777777766544333221111111 1111110 0111100
Q ss_pred cchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC-----
Q 015342 162 TQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPG----- 236 (408)
Q Consensus 162 ~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~----- 236 (408)
.......+.+.+++...++|++|.+++++.+++++| +|+.+|++..+..+++++|..+........+.+.-.
T Consensus 172 ~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~ 248 (381)
T TIGR00837 172 LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAK 248 (381)
T ss_pred cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHc
Confidence 001122356688899999999998999999999865 389999999999999999998866655555433211
Q ss_pred --c---cccccC-cCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchh
Q 015342 237 --N---LLTGFG-FYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLF 310 (408)
Q Consensus 237 --~---il~n~~-~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 310 (408)
| ..+... .....+...++.+.-.+.+.+++.-.....++.++..+++. + + +.+
T Consensus 249 ~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~------~-------------~~~ 307 (381)
T TIGR00837 249 GGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D------S-------------KKG 307 (381)
T ss_pred CCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c------c-------------cCC
Confidence 1 111110 00122344556666677788888766666666666555331 1 0 012
Q ss_pred hHHHHHHHHHHHHHHHHHccchH-HHHHHhhhhhhhhhHhhhhHHHHHHhhcc
Q 015342 311 RLVWRSCFVILTTVISMLLPFFN-DVVGILGALGFWPLTVYFPVEMYIAQKKI 362 (408)
Q Consensus 311 r~~~r~~~v~~~~~lA~~vP~~~-~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~ 362 (408)
|.....+..+...++|.+.|+.. ..++..| +.++.+.+++|+++.+|.||+
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred CchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 33344455577889999999876 9999999 888899999999999998864
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.58 E-value=1.3e-12 Score=129.18 Aligned_cols=313 Identities=15% Similarity=0.189 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
+++....+|+..++.|+..+. ++..+|.+++++.+||+++++..+...+..++.+++|..-.|+.+.+.+....
T Consensus 41 ~~~w~~~~~s~l~~~E~~~~~-----~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~- 114 (394)
T PF03222_consen 41 LIAWPLMYYSGLLLAEVSLNT-----PEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL- 114 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc-
Confidence 566778889999999976532 12579999999999999999999999999999999999999999999886421
Q ss_pred cCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccc
Q 015342 82 HESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTV 161 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (408)
+. +.+++.-.+++.++...+... .-+.....+-.-+. .+....++. .....+..+.+ .+... .
T Consensus 115 ---~~----~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~-~~i~~~~~l---~~~~~p~~~~~-~L~~~----~ 177 (394)
T PF03222_consen 115 ---GT----DLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVF-GMIISFIIL---VVYLIPHWNPS-NLLDA----P 177 (394)
T ss_pred ---CC----CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-HHHHHHHHH---HHHHhhhcCHH-Hhhcc----c
Confidence 11 122332223333222222222 11223333221111 111110111 11112211100 11100 0
Q ss_pred cchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhh--hhhh---------hcc
Q 015342 162 TQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCG--CMGY---------AAF 230 (408)
Q Consensus 162 ~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg--~~gY---------~~f 230 (408)
+...+.-..+.++|++.+||+.|+++|++.+.+++. .|+.+|++..+..+..++|.+.- +.|- ..-
T Consensus 178 ~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~ 254 (394)
T PF03222_consen 178 PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQ 254 (394)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 112233345688999999999999999999999843 38899999999988888887752 3331 112
Q ss_pred CCCCCC--ccccccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccc
Q 015342 231 GDFAPG--NLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLN 308 (408)
Q Consensus 231 G~~v~~--~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 308 (408)
|+++.+ ..+.+. ....+...++++.-.+.+.+||-=...-+++.++..++.+ ++ .
T Consensus 255 ~~~~~~~~~~~~~~--~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~--~~-------------------~ 311 (394)
T PF03222_consen 255 GGNVSALVSALANV--SGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK--NN-------------------S 311 (394)
T ss_pred CCChHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cc-------------------c
Confidence 211111 112221 1223444556666667777777544455667666655321 10 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCc
Q 015342 309 LFRLVWRSCFVILTTVISMLLPF-FNDVVGILGALGFWPLTVYFPVEMYIAQKKITK 364 (408)
Q Consensus 309 ~~r~~~r~~~v~~~~~lA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~ 364 (408)
..|...-.+..+..+++|...|+ |-..+++.| ...+.+..++|+++.+|.+++++
T Consensus 312 ~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 312 SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 23333334445677899999997 889999999 89999999999999999986543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.49 E-value=1.9e-11 Score=120.64 Aligned_cols=311 Identities=11% Similarity=0.093 Sum_probs=189.0
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
+++..+..|+.+++.|+..+. ++..++.+++++.+||+|+++..+...+..++.+.+|..-.||.+.+.++...
T Consensus 41 i~~w~~m~~t~l~l~Ev~~~~-----~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~- 114 (403)
T PRK15132 41 IGLWALMCYTALLLLEVYQHV-----PADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWT- 114 (403)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-----CCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc-
Confidence 445556778888899975431 12468999999999999999999999999999999999999999988876421
Q ss_pred cCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccc
Q 015342 82 HESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTV 161 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (408)
++ +.+.....+.+.++.....+. .-+...+.+-+= +..++...+... ....++-+. ..+...
T Consensus 115 ---~~----~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L-~~~~ii~~~~~~---~~l~p~~~~-~~L~~~----- 176 (403)
T PRK15132 115 ---GI----SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFL-FSAKIIFLVVML---ALMMPHIHK-VNLLTL----- 176 (403)
T ss_pred ---cC----CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHhcCH-HHHhcC-----
Confidence 11 112222333333232222222 223333332111 111111101111 111221100 011100
Q ss_pred cchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-----CC
Q 015342 162 TQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFA-----PG 236 (408)
Q Consensus 162 ~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v-----~~ 236 (408)
+...+ -...++|++.+||+.|+++|++.+.+++. .|+.+|++..+..+..++|+.-=......-+.+. ++
T Consensus 177 ~~~~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~ 251 (403)
T PRK15132 177 PLQQG--LALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLAN 251 (403)
T ss_pred Ccccc--HHHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 00011 25688999999999999999999998754 3889999999999999988876544444333321 11
Q ss_pred c-----cccccCc-CCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchh
Q 015342 237 N-----LLTGFGF-YNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLF 310 (408)
Q Consensus 237 ~-----il~n~~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 310 (408)
| ++..+.. ....+...++.+.-.+.+.+||-=....+++.++..++++ + + ...
T Consensus 252 ~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~------~-------------~~~ 310 (403)
T PRK15132 252 HAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--N------T-------------VGG 310 (403)
T ss_pred cCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--c------c-------------ccC
Confidence 2 2222210 1123444555665566677777544445566666655331 1 0 012
Q ss_pred hHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhhhhhHhhhhHHHHHHhhccC
Q 015342 311 RLVWRSCFVILTTVISMLLPF-FNDVVGILGALGFWPLTVYFPVEMYIAQKKIT 363 (408)
Q Consensus 311 r~~~r~~~v~~~~~lA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~ 363 (408)
|...-.+..+..+++|...|+ |...+++.|. ..+.+.+++|+++-+|.++++
T Consensus 311 r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 311 RLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred CchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 444445666888999999997 7888999886 578999999999999998643
No 12
>PRK10483 tryptophan permease; Provisional
Probab=99.41 E-value=1.8e-10 Score=113.45 Aligned_cols=309 Identities=12% Similarity=0.079 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
+++-....||..++.+...+. .+..++..++++.+||+|+.+..+...+..++.++||+--.||.+.+.++..
T Consensus 49 ~~~W~~M~~taLlllEv~l~~-----~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-- 121 (414)
T PRK10483 49 IFTWFCMLHSGLMILEANLNY-----RIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-- 121 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--
Confidence 456667788888899986542 1246899999999999999999999999999999999999999998887531
Q ss_pred cCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccc
Q 015342 82 HESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLS---IVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISI 158 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S---~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 158 (408)
+. +.+++.-.+++..+.-...+. ..+...+.+ +.+-+..+ . .. +.-..++-+ ...+.+.++
T Consensus 122 ---~~----~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~i~~f--~--~~---~~~l~~~i~-~~~L~~~~~ 185 (414)
T PRK10483 122 ---SL----NVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAKVITF--F--LT---FGSLLGHVQ-PATLFNVAE 185 (414)
T ss_pred ---CC----CCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH--H--HH---HHHHHhhcC-HHHHhcccc
Confidence 10 112222233343333333332 223344443 22221111 1 11 111111110 001111100
Q ss_pred ccccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhc---------
Q 015342 159 GTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAA--------- 229 (408)
Q Consensus 159 ~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~--------- 229 (408)
......-..+.++|++.+||+.|+++|++.+.+++. .|+.+|++..+..+..++|..-=......
T Consensus 186 ---~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~ 259 (414)
T PRK10483 186 ---SNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGI 259 (414)
T ss_pred ---ccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 001111235588999999999999999999998854 37999999999999999998843222222
Q ss_pred --cCCCCCCccccccCc-CCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcc
Q 015342 230 --FGDFAPGNLLTGFGF-YNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYK 306 (408)
Q Consensus 230 --fG~~v~~~il~n~~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 306 (408)
-|+++ +..+..+.. .+..+...++.+.-.+.+.+||-=....+++.++..++.+ + +
T Consensus 260 ~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~------~------------ 318 (414)
T PRK10483 260 AEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--D------S------------ 318 (414)
T ss_pred HHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--C------c------------
Confidence 22222 111111110 1122344455555556777777544455667766665432 1 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhhhhhHhhhhHHHHHHhhcc
Q 015342 307 LNLFRLVWRSCFVILTTVISMLLPF-FNDVVGILGALGFWPLTVYFPVEMYIAQKKI 362 (408)
Q Consensus 307 ~~~~r~~~r~~~v~~~~~lA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~ 362 (408)
...|...-.+..+-.+++|...|+ |-..++..|.. ++.+.-++|+++-+|.||+
T Consensus 319 -~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 319 -AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred -cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 012332333556788999999998 88899999976 6788889999999999975
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.35 E-value=6.1e-10 Score=109.58 Aligned_cols=311 Identities=12% Similarity=0.073 Sum_probs=188.8
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
+++-....||..++.+...+. ++..++..++++.+||+|+.+..+...+..++.++||+--.||.+.+.++..
T Consensus 47 ~~~w~~M~~t~LlllEv~l~~-----~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~-- 119 (415)
T PRK09664 47 IIAWFSMLHSGLLLLEANLNY-----PVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMN-- 119 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhh--
Confidence 456677788889999986542 1256899999999999999999999999999999999999999998887531
Q ss_pred cCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccc
Q 015342 82 HESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLS---IVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISI 158 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S---~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 158 (408)
.+. +.+.+.-.+++..+.-+..+... +...+.+ +.+.+. .|. . .+.-..++-+ ...+.+.+.
T Consensus 120 --~~~----~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~~~~ii--~f~--~---~~~~l~~~i~-~~~L~~~~~ 184 (415)
T PRK09664 120 --LGY----HANPRIVGICTAIFVASVLWISS-LAASRITSLFLGLKII--SFV--I---VFGSFFFQVD-YSILRDATS 184 (415)
T ss_pred --ccC----CCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHH--HHH--H---HHHHHhhccc-HHHHhcCcc
Confidence 011 11222223344434333333322 3333333 222111 111 1 1111111100 001111000
Q ss_pred ccccchhH-HHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhh--hhhhh--------
Q 015342 159 GTVTQTQK-IWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLC--GCMGY-------- 227 (408)
Q Consensus 159 ~~~~~~~~-~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~v--g~~gY-------- 227 (408)
...... .-..+.++|++.+||+.|+++|++.+.+++. .|+.+|++.....+..++|... ...|-
T Consensus 185 --~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~ 259 (415)
T PRK09664 185 --TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKA 259 (415)
T ss_pred --ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 000011 1125578999999999999999999998854 3788888888888888888554 22231
Q ss_pred -hccCCCCCCcccccc-CcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCc
Q 015342 228 -AAFGDFAPGNLLTGF-GFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPY 305 (408)
Q Consensus 228 -~~fG~~v~~~il~n~-~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~ 305 (408)
.+.|+++.. ++.++ ......+...++++.-.+.+.+||-=....+++.+...++.+ + +
T Consensus 260 ~~~~g~nv~~-l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~------~----------- 319 (415)
T PRK09664 260 IISSGGNVDS-LVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--N------S----------- 319 (415)
T ss_pred HHHcCCCchH-HHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--C------c-----------
Confidence 223323222 11111 001233555566666666777777544455566666655332 1 1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHccc-hHHHHHHhhhhhhhhhHhhhhHHHHHHhhcc
Q 015342 306 KLNLFRLVWRSCFVILTTVISMLLPF-FNDVVGILGALGFWPLTVYFPVEMYIAQKKI 362 (408)
Q Consensus 306 ~~~~~r~~~r~~~v~~~~~lA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~ 362 (408)
...|...-.+..+-.+++|...|+ |-+.++..|.. ++.+.-++|+++-+|.||+
T Consensus 320 --~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 320 --HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred --cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 012333334556788999999998 88999999986 6688889999999999965
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.29 E-value=3.5e-09 Score=104.43 Aligned_cols=349 Identities=11% Similarity=0.114 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
+++..+++|+..+|.+..... .++..+|.|++++.+||+++.+..++..+..+..+.+|...+.+.+...+..+
T Consensus 57 ll~~p~m~~s~l~L~e~~L~~----~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~q-- 130 (443)
T PRK13629 57 VLAYPIAFYCHRALARLCLSG----SNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQ-- 130 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHcc----CCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 456677888888888865321 12356899999999999999999999999999999999988887776654321
Q ss_pred cCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccc--
Q 015342 82 HESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIG-- 159 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~-- 159 (408)
.+.+ ..++...-+++.+++....+..+ +.+-+++-+= +..++. +.+..++ ..++.-.. ..+...+++
T Consensus 131 --l~~~---~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~L-v~~~i~--~l~~l~~-~LiP~w~~-~~L~~~~~~~~ 199 (443)
T PRK13629 131 --LGFA---PLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSYL-VWPFIA--SLVLISL-SLIPYWNS-AVIDQVDLGSL 199 (443)
T ss_pred --cCcC---CccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHH-HHHHHH--HHHHHHH-HHHHHcCH-HHHhcCccccc
Confidence 1110 11233222333333323322222 3333332111 111111 1111111 11221110 001000000
Q ss_pred ccc-chhHHHHHHHHhhhHHhhccccchhHhhhhh----hC---CCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 015342 160 TVT-QTQKIWRSFQALGDIAFAYSYSVILIEIQDT----LK---SPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFG 231 (408)
Q Consensus 160 ~~~-~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~----m~---~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG 231 (408)
+.. .....-....++|++.+||+.|+.+|+.... .+ +++.+.+|-+|++..+..+..++|+..-...-..-+
T Consensus 200 ~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs 279 (443)
T PRK13629 200 SLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLS 279 (443)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 000 0011123558899999999999999998887 43 221125889999999999999998887666666555
Q ss_pred CCC-----CCcc--ccccC--cCC---C-----hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhh-h-CCCCccCC
Q 015342 232 DFA-----PGNL--LTGFG--FYN---P-----FWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAE-S-WPDSYFLS 292 (408)
Q Consensus 232 ~~v-----~~~i--l~n~~--~~~---~-----~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~-~-~~~~~~~~ 292 (408)
.+. +.|+ +..+- .+. . .+...++.+.-.+.+..||-=....++|.++....+ . .++++
T Consensus 280 ~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~--- 356 (443)
T PRK13629 280 PQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT--- 356 (443)
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---
Confidence 432 1222 22110 111 0 223334444445566677655555677888887742 1 11110
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCccchhHHHH
Q 015342 293 KEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCL 372 (408)
Q Consensus 293 ~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~~~~~~~~~ 372 (408)
+ .+.+..+......+++.++++|+.=|++-++++-+|+-....+.|++|...-.|...-++.+. +..+
T Consensus 357 -~----------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~-~~~n 424 (443)
T PRK13629 357 -K----------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG-RLDN 424 (443)
T ss_pred -c----------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCC-Cchh
Confidence 0 011233444555667889999999999999999888888899999999999998874433322 2234
Q ss_pred HHHHHHHHHH
Q 015342 373 QMLSMACLVL 382 (408)
Q Consensus 373 ~~~~~~g~~~ 382 (408)
+++.+.|++.
T Consensus 425 ~fv~~~Gl~~ 434 (443)
T PRK13629 425 VFVTVIGLLT 434 (443)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.23 E-value=1.3e-09 Score=107.72 Aligned_cols=322 Identities=11% Similarity=0.077 Sum_probs=187.3
Q ss_pred HHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCC
Q 015342 7 VTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGG 86 (408)
Q Consensus 7 ~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~ 86 (408)
+.+++.+++.+.... ++. +..++.|++++.|||+++.+..+...+..+..+.+|....++.+....... ...
T Consensus 46 l~~~~~~ll~~~~l~-~~~---p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~-~~~--- 117 (397)
T TIGR00814 46 LTYFGHRALARFLLS-SKN---PCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQ-LGT--- 117 (397)
T ss_pred HHHHHHHHHHHHHhc-CCC---CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---
Confidence 345555556664321 111 246899999999999999999999999999999999999998887776532 111
Q ss_pred CCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccccchhH
Q 015342 87 NNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQK 166 (408)
Q Consensus 87 ~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
+. ..+....+..+..+-.......+.+..++-+-....+. ..+...+. .++..+.+ ..... +.....
T Consensus 118 ~~----p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii---~l~~l~~~-lip~~~~~-~L~~~----p~~~~~ 184 (397)
T TIGR00814 118 AP----PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVL---ILVLLSLY-LIPHWNGA-NLTTF----PSFNGF 184 (397)
T ss_pred CC----cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHcCHH-HHhcC----Ccccch
Confidence 11 11211111111111122233455555555332211111 11111111 12211100 01000 001112
Q ss_pred HHHHHHHhhhHHhhccccchhHhhh----hhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-----CCc
Q 015342 167 IWRSFQALGDIAFAYSYSVILIEIQ----DTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFA-----PGN 237 (408)
Q Consensus 167 ~~~~~~a~~~~~faf~~~~~~~~i~----~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v-----~~~ 237 (408)
..+...+++...+||.+|..+++.. +|.+||+...+|.+|++..+..+..++|+..-...-...+.+. ++|
T Consensus 185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n 264 (397)
T TIGR00814 185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN 264 (397)
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence 2356688999999999999999987 3444342235788999999999999998888776666666442 122
Q ss_pred --cccccC--cCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh-CCCCccCCccccccCCCCCCcccchhhH
Q 015342 238 --LLTGFG--FYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAES-WPDSYFLSKEFKIPVPGLLPYKLNLFRL 312 (408)
Q Consensus 238 --il~n~~--~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~r~ 312 (408)
.+..+. .+.| +...+..+.-.+.+..||-=...-+++.+++.+.+. .+++ ++ .+.+..+.
T Consensus 265 is~Ls~l~~~~~~~-~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~----~~----------~~~~~~~~ 329 (397)
T TIGR00814 265 ISILSYLANHFNAA-WISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKG----KK----------INIRKLNR 329 (397)
T ss_pred cHHHHHHHhhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc----cc----------cCHHHHHH
Confidence 111000 0122 333344444445666666555566778888877322 1110 00 00112233
Q ss_pred HHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCc
Q 015342 313 VWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITK 364 (408)
Q Consensus 313 ~~r~~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~ 364 (408)
......++.++.+|..=|++-++++-+|+-..+.+.|++|...-.|...-++
T Consensus 330 ~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~ 381 (397)
T TIGR00814 330 AIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKK 381 (397)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3445566888999999999999999888888889999999999998874433
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=98.58 E-value=0.0001 Score=74.47 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=48.0
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGY 227 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY 227 (408)
+...++....|+|.|-......-+|+||| +|+.+|++..+...+.++|.+......
T Consensus 190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 190 AVGSSIAMTLWAFLGLESACANSDAVENP---ERNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788899999999999999999999 478999999999999999998765443
No 17
>PRK10746 putative transport protein YifK; Provisional
Probab=98.58 E-value=8.1e-05 Score=75.67 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=48.2
Q ss_pred HHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 015342 168 WRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYA 228 (408)
Q Consensus 168 ~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~ 228 (408)
.+...++....|+|.|--.+...-+|+||| +|+++|++..+...+.++|.......-.
T Consensus 200 ~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~ 257 (461)
T PRK10746 200 KGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFVIVT 257 (461)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 345688889999999999999999999999 5889999999988888888876444333
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=98.49 E-value=0.00019 Score=72.94 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=47.1
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMG 226 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~g 226 (408)
+...++....|+|.|--.....-+|+||| +|+.+|++..++..+.++|......-
T Consensus 210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 210 GLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888999999999999999999999 47899999999999999998754443
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.49 E-value=0.00022 Score=72.10 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=48.3
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGY 227 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY 227 (408)
....++....|+|.|-......-+|+||| +|+.+|++..+..++.++|.++.+.-.
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778899999999999999999999 478999999999999999998877633
No 20
>PRK11021 putative transporter; Provisional
Probab=98.49 E-value=0.00026 Score=70.79 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=49.3
Q ss_pred HHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015342 167 IWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCM 225 (408)
Q Consensus 167 ~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~ 225 (408)
..+...++....|+|.|--.....-+|+||| +|+++|++..+...+.++|.++...
T Consensus 176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999 4889999999999999999998654
No 21
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.48 E-value=3.9e-05 Score=75.37 Aligned_cols=323 Identities=15% Similarity=0.183 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
.++|++.+.-++.|.+...+ +|. ..|+.|.+++.+|++..++....-...-.-++++-+..+|..++..+++
T Consensus 53 ~I~G~~~f~iMRaLGEm~~~-~p~----~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~--- 124 (462)
T COG1113 53 LIAGIFVFLIMRALGEMLVA-NPV----SGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD--- 124 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCC----CCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 35788888888888887653 333 4599999999999999999999888888888899888888888776542
Q ss_pred cCCCCCCCCccCCchhHHHHHHHH--HHhhcCCCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccc-
Q 015342 82 HESGGNNPCHMSSNPYMILFGVME--IFLSQIPDFDQIWWL-SIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGIS- 157 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~v~--~pl~~~~~l~~L~~~-S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~- 157 (408)
.+.+.+.+....++ .=|...|.+.++.++ +++=++..+.++.+.+++ +..+.+++......++..
T Consensus 125 ----------vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~l-l~~g~~~~~~~~g~snl~~ 193 (462)
T COG1113 125 ----------VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVL-LFGGFGGGGGAAGFSNLWD 193 (462)
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCcccccccc
Confidence 11222222221111 123456777777754 554433333222222221 222333322111111111
Q ss_pred cccccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHH-----hhhhhhhhccCC
Q 015342 158 IGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYM-----LCGCMGYAAFGD 232 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~-----~vg~~gY~~fG~ 232 (408)
.|. -.++...+.+.++-+.+|||.+.-.+=---.|-||| +|..+|+++.-..=..++|. ++.+.-+=.+++
T Consensus 194 hGG-ffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP---~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~ 269 (462)
T COG1113 194 HGG-FFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDP---EKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGE 269 (462)
T ss_pred CCC-cCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcCh---hhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCC
Confidence 111 112334567788999999999987776677899999 36688877765555555554 445555656666
Q ss_pred CCCCccccccCc-CCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh-CCCCccCCccccccCCCCCCcccchh
Q 015342 233 FAPGNLLTGFGF-YNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAES-WPDSYFLSKEFKIPVPGLLPYKLNLF 310 (408)
Q Consensus 233 ~v~~~il~n~~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~ 310 (408)
+.++ ...-|.. ..| +...+.|..+.....-+.-=-++..-.++..+-.+. -|+ .+ .| +.+.+....
T Consensus 270 ~~SP-FV~~f~~iGi~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk-~~-~k--------lsk~gVP~~ 337 (462)
T COG1113 270 DGSP-FVTVFSLIGIP-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPK-AF-AK--------LSKRGVPVN 337 (462)
T ss_pred CCCc-HHHHHHHcCCc-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccH-hH-hh--------ccccCCCHH
Confidence 5433 2222210 111 111222221111111111000111112222222111 011 01 00 011111234
Q ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhh--hHhhhhHHHHHHhhc
Q 015342 311 RLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWP--LTVYFPVEMYIAQKK 361 (408)
Q Consensus 311 r~~~r~~~v~~~~~lA~~vP~~~~v~~l~Ga~~~~~--l~fi~P~l~~lk~~~ 361 (408)
-+...++..++..++....| +.++.++=+.++.. ....+=.+.++|.+|
T Consensus 338 ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 338 AILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666678888888899 66666665444433 334445677777776
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.43 E-value=0.00035 Score=71.22 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=48.3
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFG 231 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG 231 (408)
+...++....|+|.|--....+-+|+||+ |+.+|++..+...+.++|..+....+...+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 34467788899999987777787888876 899999999999999999998876654444
No 23
>TIGR00909 2A0306 amino acid transporter.
Probab=98.42 E-value=0.0004 Score=69.88 Aligned_cols=206 Identities=14% Similarity=0.068 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcccc
Q 015342 3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFH 82 (408)
Q Consensus 3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~ 82 (408)
+.+++.........+..++ .|..| ..-+-.++.+||+..........+.....+.++....++.+..+.+....+
T Consensus 44 i~~~~~~~~a~~~~el~~~-~p~~G----g~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (429)
T TIGR00909 44 LAGLTALFIALVYAELAAM-LPVAG----SPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD 118 (429)
T ss_pred HHHHHHHHHHHHHHHHHhh-cCCCC----cceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3455555555556665433 23322 223445678999998888888877777777777777788777766521000
Q ss_pred CCCCCC--CCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccccc
Q 015342 83 ESGGNN--PCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGT 160 (408)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (408)
...... ..+.....+..+...+.+-....+..+..+.++.+.....+....+.+...+.+ .+ ..+..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~----~~-~~~~~~~---- 189 (429)
T TIGR00909 119 LPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIH----FA-SNNYTPF---- 189 (429)
T ss_pred CchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhh----Cc-HHhcCCC----
Confidence 000000 000000001111111111122334566666666554333332111111111211 10 0111110
Q ss_pred ccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 015342 161 VTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGY 227 (408)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY 227 (408)
. .....+...++....|+|.|........+|+||| +|+.+|++..++.++.++|..+.....
T Consensus 190 -~-~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 190 -M-PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred -C-CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1123345677888999999999999999999999 478999999999999999999875544
No 24
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.40 E-value=0.00066 Score=69.35 Aligned_cols=177 Identities=13% Similarity=0.103 Sum_probs=95.2
Q ss_pred cHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhhcC
Q 015342 32 TYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQI 111 (408)
Q Consensus 32 sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~ 111 (408)
.|.+.+++.+||.....+.....+.....+.+.....+..+.... + ......|..+..++. -+...
T Consensus 69 ~~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~-~~in~ 134 (478)
T TIGR00913 69 SFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWT------D-------KVNPAVWIAIFYVFI-VIINL 134 (478)
T ss_pred CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------C-------CCCHHHHHHHHHHHH-HHHHH
Confidence 577888999999988888887776665555555555555443221 1 011222222221111 12233
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccc---c-cccc--hhHHHHHHHHhhhHHhhccccc
Q 015342 112 PDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISI---G-TVTQ--TQKIWRSFQALGDIAFAYSYSV 185 (408)
Q Consensus 112 ~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~---~-~~~~--~~~~~~~~~a~~~~~faf~~~~ 185 (408)
+..+..+.+..+..+.-+......+...+.......+.+......++ + ..+. .....+...++....|+|.|--
T Consensus 135 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e 214 (478)
T TIGR00913 135 FGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTE 214 (478)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHH
Confidence 44555555543332111111111111111111111110000000000 0 0110 1124456678888899999999
Q ss_pred hhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015342 186 ILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCM 225 (408)
Q Consensus 186 ~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~ 225 (408)
.....-+|+||| +|+.+|++..+...+.++|......
T Consensus 215 ~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 215 LVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 4889999999999999999987543
No 25
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.39 E-value=0.00039 Score=70.60 Aligned_cols=197 Identities=12% Similarity=0.122 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcccc
Q 015342 3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFH 82 (408)
Q Consensus 3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~ 82 (408)
+.|++.+....-+.+.... .|..| ++-+-+++.+||...+.+.....+.....+.+.....++.+....+
T Consensus 53 i~gi~~~~v~~s~aEl~s~-~P~aG----g~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p----- 122 (456)
T PRK10238 53 IAGFIAFLIMRQLGEMVVE-EPVAG----SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP----- 122 (456)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCCC----CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 3444444445555554322 23333 4555577889999999999888877777776666666665544321
Q ss_pred CCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccCcccc-cccc
Q 015342 83 ESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAAN-GAFKGSLTGI-SIGT 160 (408)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~-~~~~ 160 (408)
+ .....+..++..+...+. ....+..+.+..+..+..+...++.++..+...... +.++....+. +.+.
T Consensus 123 -~-------~~~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (456)
T PRK10238 123 -E-------IPTWVSAAVFFVVINAIN-LTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGG 193 (456)
T ss_pred -c-------CcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCC
Confidence 0 112222222111111111 223333333333222222211111111111111111 1001111110 0000
Q ss_pred ccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhh
Q 015342 161 VTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLC 222 (408)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~v 222 (408)
.. .+...+...+++...|+|.|--.....-+|+||| +|+.+|++..++....++|...
T Consensus 194 ~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 194 FL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred Cc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence 00 1112244566778899999999999999999999 4789999998888888887664
No 26
>PRK15049 L-asparagine permease; Provisional
Probab=98.34 E-value=0.00068 Score=69.65 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=48.5
Q ss_pred HHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 015342 168 WRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFG 231 (408)
Q Consensus 168 ~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG 231 (408)
.+.+.++....|+|.|--.....-+|+||| +|+.+|++..++..+.++|............
T Consensus 220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 220 LPALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 344566677899999999999999999999 4789999999999998888887655444333
No 27
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.33 E-value=0.00094 Score=67.71 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcccc
Q 015342 3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFH 82 (408)
Q Consensus 3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~ 82 (408)
+.+++.+.....+.+.... .|..| +..+.+++.+||+....+.....+.....+.+.....++.+....+
T Consensus 53 i~~v~~~~~a~~~aEl~s~-~P~~G----g~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----- 122 (452)
T TIGR01773 53 LAGLLVVFIMRMLGEMAVA-NPDTG----SFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----- 122 (452)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCCC----CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 3444455445555554332 23322 4567788999999988888877766666666655555655544321
Q ss_pred CCCCCCCCccCCchhHHHHHHHH-HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccc-cccc
Q 015342 83 ESGGNNPCHMSSNPYMILFGVME-IFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGI-SIGT 160 (408)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~v~-~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~-~~~~ 160 (408)
. ...|.+..+++. .-+.-.+..+..+.+..+..+.-+....+.+...+.......+ ..+..+. ++.+
T Consensus 123 --------~--~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~-~~~~~~~~~~~~ 191 (452)
T TIGR01773 123 --------D--IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAP-GSEVSGFSNLTG 191 (452)
T ss_pred --------c--CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCccccccC
Confidence 0 112222222111 1111223344444443332222111111111111111111111 1110000 0000
Q ss_pred cc--chhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 015342 161 VT--QTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAA 229 (408)
Q Consensus 161 ~~--~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~ 229 (408)
.. .++...+.+.++....|+|.|--.....-+|+||| +|+.+|++..++.....+|..........
T Consensus 192 ~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 192 KGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred CCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 00 01122346688889999999999999999999999 47899999988888888998865544333
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.33 E-value=0.0011 Score=67.54 Aligned_cols=178 Identities=10% Similarity=0.047 Sum_probs=95.4
Q ss_pred HHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCch-hHHHHHHH-HHHhhcC
Q 015342 34 MDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNP-YMILFGVM-EIFLSQI 111 (408)
Q Consensus 34 ~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~i~~~v-~~pl~~~ 111 (408)
-+.+++.+||+..........+.......++.....+.+..+.+. + +.+ .... +.....++ .+-....
T Consensus 76 y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~--~---~~~-----~~~~~~~~~~~~~~~~~~ln~ 145 (473)
T TIGR00905 76 YAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL--F---GSG-----NPVPSILGASVLLWVFTFLVL 145 (473)
T ss_pred hhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h---cCC-----CcHHHHHHHHHHHHHHHHHHH
Confidence 345689999999888888776655555566666666666555442 1 000 1111 11111111 1112234
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccccchhHHHHHHHHhhhHHhhccccchhHhhh
Q 015342 112 PDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQ 191 (408)
Q Consensus 112 ~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~ 191 (408)
+..+..+.+..+..+..+.-.++.+...+.. .+.+....+..+.. .+...........++....|+|.|-......-
T Consensus 146 ~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a 222 (473)
T TIGR00905 146 RGVRQAAFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHD--VPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSS 222 (473)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccC--CCcccchHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4555555555443322221111111111211 11110000100000 00001122345577888999999998888899
Q ss_pred hhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 015342 192 DTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYA 228 (408)
Q Consensus 192 ~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~ 228 (408)
+|+||+ |+.+|++..+..++.++|.+.......
T Consensus 223 ~E~k~~----r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 223 GRAKNK----SDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999994 899999999999999999888665433
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.32 E-value=0.00086 Score=68.13 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=45.6
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCM 225 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~ 225 (408)
+.+.++....|+|.|--.....-+|+||| +|+.+|++..+...+.++|......
T Consensus 200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999999999 4789999998888788888776443
No 30
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.31 E-value=0.00067 Score=68.68 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCM 225 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~ 225 (408)
+...++....|+|.|--.....-+|+||| +|+.+|++..++..+.++|....+.
T Consensus 182 ~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 182 AVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999 4789999999999999999986555
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.30 E-value=0.0014 Score=66.74 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=46.4
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGY 227 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY 227 (408)
+.+.++....|+|.|--.....-+|+||| +|+.+|++..+...+.++|......-+
T Consensus 212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 212 GFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 46688889999999999999999999999 478999998777777888876655443
No 32
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.28 E-value=0.00097 Score=68.01 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=49.9
Q ss_pred HHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 015342 168 WRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFG 231 (408)
Q Consensus 168 ~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG 231 (408)
.+.+.++....|+|.|--.....-+|+||| +|+++|++..+...+..+|.......-....
T Consensus 206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 206 LPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 455677778899999999999999999999 4789999999999999999888654433333
No 33
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.28 E-value=0.0012 Score=66.66 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=52.1
Q ss_pred HHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 015342 167 IWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAF 230 (408)
Q Consensus 167 ~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~f 230 (408)
..+...++....|+|.|--.....-+|+||| +|+.+|++..+...+.++|..+........
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788889999999999999999999999 478999999999999999999877654333
No 34
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.24 E-value=0.00068 Score=68.54 Aligned_cols=171 Identities=11% Similarity=-0.004 Sum_probs=91.8
Q ss_pred cHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhhcC
Q 015342 32 TYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQI 111 (408)
Q Consensus 32 sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~ 111 (408)
..-.-+++.+||....+......+.......++....++.+..+++. .....+.++...+.. +...
T Consensus 72 g~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~~~-~ln~ 137 (442)
T TIGR00908 72 GGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIVFI-GINI 137 (442)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHHHH-HHHH
Confidence 34446688999998888888877776666667777777766655321 011111111111111 1122
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccc-cc-ccchhHHHHHHHHhhhHHhhccccchhHh
Q 015342 112 PDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISI-GT-VTQTQKIWRSFQALGDIAFAYSYSVILIE 189 (408)
Q Consensus 112 ~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~a~~~~~faf~~~~~~~~ 189 (408)
+..+..+.+..+..+..+. .+.+..... ....+ ..+....++ +. ........+.+.++....|+|.|......
T Consensus 138 ~g~~~~~~i~~~~~~~~~~--~l~i~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~ 212 (442)
T TIGR00908 138 LGVGEAAKLEFVVTAVAII--ALGVFIGAM--VPHFD-SANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAM 212 (442)
T ss_pred HHHHHHHhHHHHHHHHHHH--HHHHHHHHH--hccCC-HHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443322221111 011111110 11000 000000000 00 00111233566778888999999999999
Q ss_pred hhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015342 190 IQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGC 224 (408)
Q Consensus 190 i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~ 224 (408)
.-+|+||| +|+.+|++..+..++..+|..+-.
T Consensus 213 ~aeE~k~P---~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 213 AAEETKNP---KRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 478999999999988888877644
No 35
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.17 E-value=0.00079 Score=67.58 Aligned_cols=183 Identities=14% Similarity=0.087 Sum_probs=100.7
Q ss_pred cHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHH-HHHH-HHHhh
Q 015342 32 TYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMIL-FGVM-EIFLS 109 (408)
Q Consensus 32 sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i-~~~v-~~pl~ 109 (408)
..-+-+++++||+..........+.....+.++....++.+...+. ++. ........++ ..++ ..-..
T Consensus 63 G~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~i~~~~~~~~~~l 132 (426)
T PF13520_consen 63 GIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFG-----PDL-----NPSPWPQFLIAIILILLFTLL 132 (426)
T ss_dssp THHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-----GGG-----TCSHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhcccccchhcccceeEEEeeccccccccchhhhhhhccc-----ccc-----ccccchheeeeecccccceEe
Confidence 4556778889999998888888877777777777777766544321 110 0011111111 1111 11222
Q ss_pred cCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCccCccccccccccchhHHHHHHHHhhhHHhhccccchhH
Q 015342 110 QIPDFDQIWWLSIVAAVMSF-TYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILI 188 (408)
Q Consensus 110 ~~~~l~~L~~~S~~~~~~~~-~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~ 188 (408)
..+..|..+++..+..+..+ ....+.+...+....++.....+....+. .+...+ ..+.+++...|+|.|--...
T Consensus 133 ~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~G~e~~~ 208 (426)
T PF13520_consen 133 NLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTF-FPSGWP---GFLAGFSVAFFAFSGFEAIA 208 (426)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCS-SCSSSS---HHHHHHHHHGGGGTTTTHHH
T ss_pred eechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeeccccccccccccccc-CCcccc---chhhHHHHHHhhcccccccc
Confidence 34455666666544433333 11111222222211110000000000000 011111 24677888999999999999
Q ss_pred hhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 189 EIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 189 ~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
..-+|+|| |+.+|++..++.++.++|......-....+++
T Consensus 209 ~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 209 SLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred cccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence 99999764 78999999999999999999977666665553
No 36
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.15 E-value=0.00093 Score=67.61 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=48.1
Q ss_pred HHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015342 168 WRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCM 225 (408)
Q Consensus 168 ~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~ 225 (408)
.+.+.++....|+|.|-.......+|+||| +|+.+|++..++.+++++|.+....
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 195 MALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999 4889999999999999999887654
No 37
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.11 E-value=0.0014 Score=67.31 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=49.9
Q ss_pred HHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 015342 167 IWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGY 227 (408)
Q Consensus 167 ~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY 227 (408)
..+...++....|+|.|-.......+|+||| +|+.+|++..+..++.++|.++...-.
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888999999999999999999999 488999999999999999999865443
No 38
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.08 E-value=0.0016 Score=66.47 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=43.4
Q ss_pred hHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 015342 176 DIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFG 231 (408)
Q Consensus 176 ~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG 231 (408)
.+.|+|.|--.....-+|+||| +|+.+|++..+...+.++|....+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999988888888999999 4889999999999999999876555443333
No 39
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.07 E-value=0.0054 Score=62.73 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=44.7
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFG 231 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG 231 (408)
....++-...|+|.|--.....-+|+||| +|+.+|++..+..+..++|.++.+.-+..-+
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44455556779999999999999999999 4889999999988777655544443333444
No 40
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.01 E-value=0.003 Score=65.80 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=49.3
Q ss_pred HHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 015342 168 WRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMG 226 (408)
Q Consensus 168 ~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~g 226 (408)
.+.+.+.....|+|.|--.+...-+|+||| +|+.+|++..++.+++++|..+...-
T Consensus 231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 231 TGVLSGAATCFFAFIGFDAIATTGEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999999999999999999 47899999999999999999886543
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.97 E-value=0.0069 Score=66.67 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=93.5
Q ss_pred HHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCC
Q 015342 36 AVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFD 115 (408)
Q Consensus 36 l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~ 115 (408)
..++++|+.....+.++..+.+...+..|.+-.++.+..++...+.. .. .++ ....+.+.++..+++..+ ++.
T Consensus 148 yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~-~~-~~~-~~~~~iia~i~l~ll~~I----n~~ 220 (953)
T TIGR00930 148 LISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK-IM-VDP-INDIRIYGTVTVVVLLGI----SFA 220 (953)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cc-cCc-cccchHHHHHHHHHHHHH----HHh
Confidence 46788999888888888777777778888888898888776421100 00 000 011121111111111222 223
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCccCccccc---cc--cccchhHHHH-HHHHhhhHHhhccccchh
Q 015342 116 QIWWLSIVAAVMSFTYSAIGLALGIVQVAANG--AFKGSLTGIS---IG--TVTQTQKIWR-SFQALGDIAFAYSYSVIL 187 (408)
Q Consensus 116 ~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~--~~~~~~~~~~---~~--~~~~~~~~~~-~~~a~~~~~faf~~~~~~ 187 (408)
..++.+-+..++.++-.+.++.. +.-+...+ .......+.+ +. ..+......+ ++..++++.+||.|....
T Consensus 221 Gvk~~ak~q~vl~vi~ll~ll~~-iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ag 299 (953)
T TIGR00930 221 GMEWENKAQVLFLVIVLLSILNI-FVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAG 299 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 33333333332222111001000 11001000 0000000000 00 0001111112 456677788899998888
Q ss_pred HhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015342 188 IEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCM 225 (408)
Q Consensus 188 ~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~ 225 (408)
..+-.|+||| +|+.+|.+..++.+++++|+++.+.
T Consensus 300 an~sgElKnP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 300 ANISGDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999 4889999999999999999999753
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.94 E-value=0.0021 Score=63.13 Aligned_cols=199 Identities=13% Similarity=0.130 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccc
Q 015342 2 FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCF 81 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~ 81 (408)
++.++.......++.+..++. ++ .+..|..++++||+...++......+.+..+..-.-..+|.+.... +
T Consensus 41 ll~~~~~~~~~~~~~~l~~~~---p~---~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l 110 (359)
T TIGR00912 41 ILGGLIIIFLLCLMIKIMSKF---PE---KNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----L 110 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHC---CC---CCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c
Confidence 355666777777777766532 22 3688999999999988888887777766665555545555554321 1
Q ss_pred cCCCCCCCCccCCchhHHHHH-HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccccc
Q 015342 82 HESGGNNPCHMSSNPYMILFG-VMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGT 160 (408)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~-~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (408)
+ ++..+.+... ....-....+.++..+.++.+-....+.. . .+..... ..++.+ ..+..+..
T Consensus 111 ~----------~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~-~-~~il~~~-~~~~~~-~~~l~P~~--- 173 (359)
T TIGR00912 111 P----------RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL-F-ILVLILL-APKLGN-IKNLLPVL--- 173 (359)
T ss_pred C----------CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH-H-HHHHHHH-hccccc-HHHccCcc---
Confidence 1 1112222211 11111223346666666665443222211 0 0111111 111110 11111110
Q ss_pred ccchhHHHHHHH-HhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 015342 161 VTQTQKIWRSFQ-ALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFA 234 (408)
Q Consensus 161 ~~~~~~~~~~~~-a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v 234 (408)
.....+... +.+...++|.+.........+++|| |+.+|+...+..++..+|..+-+.....+|.+.
T Consensus 174 ---~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 174 ---ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred ---ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 111122232 2346778888777777778889988 889999999999999999999888888888654
No 43
>PRK10836 lysine transporter; Provisional
Probab=97.88 E-value=0.02 Score=58.74 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=46.9
Q ss_pred HHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 015342 169 RSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAA 229 (408)
Q Consensus 169 ~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~ 229 (408)
+.+.+.....|+|.|--.....-+|+||| +|+.+|++..++..+.++|......-...
T Consensus 206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 206 AMIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 34444555679999999999999999999 48899999999999999999886544333
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.83 E-value=0.011 Score=59.87 Aligned_cols=184 Identities=13% Similarity=0.121 Sum_probs=105.3
Q ss_pred cHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHH--hh
Q 015342 32 TYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIF--LS 109 (408)
Q Consensus 32 sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~p--l~ 109 (408)
.+-+-+++.+||+....+.....+.......+..+..++.+..+.+.. +.. ......+..+..++... +.
T Consensus 77 G~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~l 148 (466)
T COG0531 77 GAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGP-----GLL---SIGPLLIILIALALIALLTLL 148 (466)
T ss_pred CeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----hhh---cCCchHHHHHHHHHHHHHHHH
Confidence 455667899999888888888877777777777777777655554310 000 00011122221111111 22
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccccchhHHHHHHHHhhhHHhhccccchhHh
Q 015342 110 QIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIE 189 (408)
Q Consensus 110 ~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~ 189 (408)
-.+..+.......+..+..+....+.....+.....+ ..+.... . ............++....++|.|-....+
T Consensus 149 n~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~---~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 222 (466)
T COG0531 149 NLRGIKASAKINSIITILKIIILLIFIILGLFAFGFS---NGNLFAP-F--NPGGGSFGGILAAILLAFFAFTGFEAIAT 222 (466)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---ccccCCC-c--ccccchHHHHHHHHHHHHHHhhcHHHHHH
Confidence 2344454444444433333322111111222221111 0111100 0 00111222466888888999999999999
Q ss_pred hhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 015342 190 IQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGD 232 (408)
Q Consensus 190 i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~ 232 (408)
.-+|+||| +|+.+|.+..++..+.++|......-....++
T Consensus 223 ~a~E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 223 LAEEVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99999999 47799999999999999999998887777775
No 45
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.81 E-value=0.0046 Score=63.68 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015342 171 FQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGC 224 (408)
Q Consensus 171 ~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~ 224 (408)
...+..+.|+|.|--.....-+|+||| +|+++|++..+..++.++|....+
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHHH
Confidence 344445689999988888999999999 478999999999988888876443
No 46
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.73 E-value=0.0064 Score=60.89 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=98.1
Q ss_pred HHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCccccc------cC
Q 015342 170 SFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTG------FG 243 (408)
Q Consensus 170 ~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~n------~~ 243 (408)
+..++=.-.|||.|=..+--+-+|+||| +|+++|++..++.+++++|..+=+..+-+-- .+.++.+ |+
T Consensus 206 i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa 279 (479)
T KOG1287|consen 206 IALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFA 279 (479)
T ss_pred HHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHH
Confidence 4466667789999988888899999999 5889999999999999999998665443322 1222221 10
Q ss_pred c-CCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhh-hCCCCccCCccccccCCCCCCcccchhhH--HHHHHHH
Q 015342 244 F-YNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAE-SWPDSYFLSKEFKIPVPGLLPYKLNLFRL--VWRSCFV 319 (408)
Q Consensus 244 ~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~r~--~~r~~~v 319 (408)
. -.+.+. -++-+++.++..++.--.++.....+...-++ +.|+. + .+.+ .++. ....++.
T Consensus 280 ~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~-~------------s~i~--~~~~TP~~allf~ 343 (479)
T KOG1287|consen 280 DRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAF-F------------SMIS--VRRFTPRPALLFS 343 (479)
T ss_pred HHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHH-H------------Hhhc--CCCCCChHHHHHH
Confidence 0 011111 12333344444443321111111111111111 11110 0 0000 0010 0112223
Q ss_pred HHHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCc
Q 015342 320 ILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITK 364 (408)
Q Consensus 320 ~~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~ 364 (408)
....++..++.+++.+++.++=.......+.+=+++++|.++++.
T Consensus 344 ~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 344 GLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 444556666778999999998777778888889999999987654
No 47
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.66 E-value=0.013 Score=55.51 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcccc
Q 015342 3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFH 82 (408)
Q Consensus 3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~ 82 (408)
+++.+-..+..++.+..++. +..+|+|.-++.+||+..++.|+.+.+.++++++.-+--.|.++++-+.
T Consensus 44 vs~vlf~~~g~vim~ig~~f------~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~----- 112 (349)
T COG3949 44 LSTVLFTLSGAVIMTIGKKF------NATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG----- 112 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC-----
Confidence 45555555666666654431 2679999999999999999999999999999999988777777666432
Q ss_pred CCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHH
Q 015342 83 ESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLS 121 (408)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S 121 (408)
.+.+.=.++..+.+..+.++++.+.+-.+.
T Consensus 113 ---------lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 113 ---------LPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 222211233333344444666677665443
No 48
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.42 E-value=0.19 Score=51.36 Aligned_cols=60 Identities=12% Similarity=-0.087 Sum_probs=45.8
Q ss_pred HHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 015342 170 SFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGD 232 (408)
Q Consensus 170 ~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~ 232 (408)
...+.....|+|.|--....+-+|+||| +|+.+|++..+..+...+|..+-+......++
T Consensus 215 ~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 215 FLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3445556789999999999999999999 48899999999998877666655444443343
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.39 E-value=0.16 Score=52.23 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 015342 168 WRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMG 226 (408)
Q Consensus 168 ~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~g 226 (408)
++.+.++....|+|.|--.....-+|+||| +|+.+|++..+...+..+|.+..+.-
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777889999999999999999999 48899999999999999999865433
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=96.88 E-value=0.037 Score=53.41 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcccc
Q 015342 3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFH 82 (408)
Q Consensus 3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~ 82 (408)
+.++......++..+..++. + ..+..|..++.+||+...++.....++.+......+-..+|.++...- +
T Consensus 40 l~~~~~l~~~~l~~~l~~~~---p---~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p 109 (320)
T PF03845_consen 40 LGGLIGLLLALLIYYLLKRF---P---GKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----P 109 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHC---C---CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 34455555566666655421 2 468999999999999988888888888877777777777776665431 1
Q ss_pred CCCCCCCCccCCchhHHHHH-HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccc
Q 015342 83 ESGGNNPCHMSSNPYMILFG-VMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTV 161 (408)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~-~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (408)
++..|.+... ..+.--.-.+.++.++..+-+-....+....+. ..-..++.+.+ +..+.
T Consensus 110 ----------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i----~~~~~~~~~~~-~l~P~----- 169 (320)
T PF03845_consen 110 ----------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLI----LLLSIPNIDWD-NLLPV----- 169 (320)
T ss_pred ----------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH----HHHhcccCCHH-HeeCc-----
Confidence 1222222211 111222234567777765433222211111111 11111211111 11111
Q ss_pred cchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 015342 162 TQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFA 234 (408)
Q Consensus 162 ~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v 234 (408)
...+..+.+.+.-...+.|.+-..+.-+...+++| ++.+|....+......+|...-+.....||.+.
T Consensus 170 -~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 170 -LESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred -ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 12223344455556667777776777788888888 788999999999999999998888888899653
No 51
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.66 E-value=0.8 Score=45.44 Aligned_cols=177 Identities=12% Similarity=0.135 Sum_probs=99.0
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhh
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLS 109 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~ 109 (408)
..++.-+.|..||++|..+..+...+...|--..-....|+.+..+.+.. + +.+ +...+.++.+++..+.+
T Consensus 57 Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~-~---~~~-----~~~~~~~i~~~l~~~~~ 127 (386)
T TIGR02358 57 GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL-F---GEE-----SPMLWILIVGILVTLWL 127 (386)
T ss_pred CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CCC-----chHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999988888889999999887531 1 111 12234445555555555
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccccchhHHHHHHHHhhhHH-hhccccchhH
Q 015342 110 QIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIA-FAYSYSVILI 188 (408)
Q Consensus 110 ~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-faf~~~~~~~ 188 (408)
.. -.+.++++..++............+.... +.+. ....++ +... ....++.... +.-......+
T Consensus 128 ~~-G~~~i~~~~~~~~~~~~i~~~~~~~~~~~---~~~~-~~~~~~------~~~~---s~~~~~~~~~~~~~swa~~~~ 193 (386)
T TIGR02358 128 LS-GPLAFVWLNNWSVWLLLIATLWLLVVVFS---KADL-SELWNR------AGDM---SFAVAVELVIAMPLSWLPLIA 193 (386)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccch-hhhcCC------CCCc---cHHHHHHHHHHHHHHHHHHcc
Confidence 32 44556666555543222111111111111 1110 000000 0111 1111221111 1012233467
Q ss_pred hhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 189 EIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 189 ~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
+..+-.|+| |+..+....+......+-..+|...-.+.|+.
T Consensus 194 DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 194 DYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred chhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 777777776 66666667777777777788888777666653
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.64 E-value=0.013 Score=59.95 Aligned_cols=64 Identities=25% Similarity=0.184 Sum_probs=53.7
Q ss_pred HHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 167 IWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 167 ~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
.-+.+.++....++|.|--.....-+|.||| +|+.+|++..++....++|.......-...+.+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 4456788999999999998888999999999 488999999999999999998877655555544
No 53
>PRK11375 allantoin permease; Provisional
Probab=96.60 E-value=1.1 Score=46.02 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=39.8
Q ss_pred cccHHHHHHHHccCCcceehHHHHH-HHHhhhHHHHHHhhhhhHHHHHhh
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQY-LNLFGIAIGYTIAASISMMAIKRS 78 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~-~~~~g~~v~y~i~~~d~l~~i~~~ 78 (408)
..++.-+.|..||.+|.++..+... +..+|=-..-..+.|+.+..+++.
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~ 137 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK 137 (484)
T ss_pred CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999988885 567777777777788888877654
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.41 E-value=0.41 Score=48.40 Aligned_cols=193 Identities=16% Similarity=0.100 Sum_probs=102.9
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccC--CchhHHHHHHHHHH
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMS--SNPYMILFGVMEIF 107 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~--~~~~~~i~~~v~~p 107 (408)
..++.-+.|..||++|..+..++..+..+|-...-....|+.+..+++.. ++...+.++ +.. .....+++.++.++
T Consensus 75 Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i-~~~~~~~~~-~~t~~~~~~~~i~~~l~~~ 152 (442)
T TIGR00800 75 GLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSI-FPGYLHLGN-GMTTLELICFIIFWALVLV 152 (442)
T ss_pred CCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cccccccCC-cccHHHHHHHHHHHHHHHH
Confidence 35888999999999999999999999999999999999999998887652 111000000 000 11222344445555
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccccchhHHHHHHHHhhhHH-hhccccch
Q 015342 108 LSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIA-FAYSYSVI 186 (408)
Q Consensus 108 l~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-faf~~~~~ 186 (408)
+....-.+-.+.....+....+... ........ +.+.. .+.... .+..+.....+....++...+ +.-..-.+
T Consensus 153 ~~~~~g~~~~~~~~~~a~~~~~~~~-~~~~~~~~---~~~g~-~~~~~~-~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~ 226 (442)
T TIGR00800 153 FLFFFGYKIRHLFEWLAVVPPFAAF-GMLIWALS---KAHGK-GPLGEL-TGTLHGSTGAWAFLYALSLVIGSFATWATN 226 (442)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HcCCC-CccccC-CCCCCcchhHHHHHHHHHHHHHHHHHHHcC
Confidence 4444444444444444432211110 11111111 11100 000000 000011222344444444322 22234567
Q ss_pred hHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhc----cCCCC
Q 015342 187 LIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAA----FGDFA 234 (408)
Q Consensus 187 ~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~----fG~~v 234 (408)
.++.-+-+|+| ++-.+....++.........+|+.+-.. +|+..
T Consensus 227 ~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 227 APDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred chhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 78898999987 4444446666667777777777777665 87654
No 55
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.20 E-value=1.8 Score=44.34 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=50.8
Q ss_pred ccccHHHHHHHHccCCc-ceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHH
Q 015342 29 RNYTYMDAVRSILGGAK-VKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIF 107 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~-~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~p 107 (408)
+..|..|.-++-||++. +.+..+...+..++...+-+...|..++.+.. .+....+++.++++..
T Consensus 106 ~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~i 171 (483)
T PRK09442 106 NAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVAL 171 (483)
T ss_pred CCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence 36899999999999764 55555556655666566666666766666532 1223334444555556
Q ss_pred hhcCCCCCchhHHHHH
Q 015342 108 LSQIPDFDQIWWLSIV 123 (408)
Q Consensus 108 l~~~~~l~~L~~~S~~ 123 (408)
.+...-++...++..+
T Consensus 172 Yt~~GGl~av~~TD~i 187 (483)
T PRK09442 172 YTAFGGFRAVVLTDAL 187 (483)
T ss_pred HHHhccHHHHHHHHHH
Confidence 6666677777776544
No 56
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.11 E-value=1.9 Score=43.92 Aligned_cols=82 Identities=10% Similarity=0.141 Sum_probs=54.5
Q ss_pred ccccHHHHHHHHccCC-cceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHH
Q 015342 29 RNYTYMDAVRSILGGA-KVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIF 107 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~p 107 (408)
+..|.+|.-++-||++ .+.+..+...+..++...+-+...|..++.+.. .+.+..+++.++++..
T Consensus 105 ~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~i 170 (471)
T TIGR02119 105 NAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLI 170 (471)
T ss_pred CCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
Confidence 3689999999999965 467778888887777777777777766666542 1223334444444555
Q ss_pred hhcCCCCCchhHHHHHH
Q 015342 108 LSQIPDFDQIWWLSIVA 124 (408)
Q Consensus 108 l~~~~~l~~L~~~S~~~ 124 (408)
.....-++...++..+=
T Consensus 171 Yt~~GG~~av~~td~iQ 187 (471)
T TIGR02119 171 YTTFGGFRAVALTDAIQ 187 (471)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 56666677777776443
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.08 E-value=1.2 Score=44.63 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=92.8
Q ss_pred HHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhhc--C
Q 015342 34 MDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQ--I 111 (408)
Q Consensus 34 ~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~--~ 111 (408)
-.++|+.||.+|+++..+.+.+.++|-...-.+..|+. +.+ . . ..+...+.++.++++...+. .
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~~-------~--~--~~~~~~~ili~g~l~~l~~ifG~ 149 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA---IGS-------G--T--GLPVWAGILIIGVLMTLVTIFGY 149 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc---ccc-------C--C--CCcHHHHHHHHHHHHHHHHHHhH
Confidence 45789999999999999999999999999999999986 111 0 1 12344556666655555544 3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCccCccccccccccchhHHHHHHHHhh-hHHhhccccchhHh
Q 015342 112 PDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAA-NGAFKGSLTGISIGTVTQTQKIWRSFQALG-DIAFAYSYSVILIE 189 (408)
Q Consensus 112 ~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~faf~~~~~~~~ 189 (408)
|-++.+...+.......+.+ . +....+ ....+..... .++...+ +. .++. .+.+.-....-..+
T Consensus 150 r~l~~l~~~a~~~~~~lf~~---l----~~~~~~~~~~~~~~~~~----~~~~~~~-fl--~a~slv~g~~~sw~~~~aD 215 (442)
T COG1457 150 RALHKLERIAVPLLLLLFLY---L----LALLFRSKGGLDALWVK----GPTSPLS-FL--SALSLVIGSFASWGPYAAD 215 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH---H----HHHHHhcccccceeecc----CCCcchh-HH--HHHHHHHHHHHhhhhhhhh
Confidence 44566665554332221111 1 111111 1111110000 0111111 11 2222 11112233455667
Q ss_pred hhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 015342 190 IQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFA 234 (408)
Q Consensus 190 i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v 234 (408)
.-+-+|+|++ ++.-.....+......+-...|...-.+=|++.
T Consensus 216 ysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 216 YSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 7778888831 244444555555666667777888888888775
No 58
>PRK11017 codB cytosine permease; Provisional
Probab=95.00 E-value=3.3 Score=41.34 Aligned_cols=46 Identities=11% Similarity=-0.083 Sum_probs=36.3
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHH
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAI 75 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i 75 (408)
..++.-+.|..||.+|.++..+...+...|-...-....++.+..+
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~ 115 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA 115 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999888888776666555666655543
No 59
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=94.54 E-value=1.3 Score=44.01 Aligned_cols=83 Identities=10% Similarity=0.181 Sum_probs=45.1
Q ss_pred ccccHHHHHHHHccCCc--ceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHH
Q 015342 29 RNYTYMDAVRSILGGAK--VKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEI 106 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~--~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~ 106 (408)
+..|..|.-++-||++. +.+..+..++..+....+.+...|..++.+.. .+....+++.+.+++
T Consensus 67 ~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~ 132 (406)
T PF00474_consen 67 GAVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVI 132 (406)
T ss_dssp T--SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHH
Confidence 36899999999999988 55555556666666666666666666555432 122333444444555
Q ss_pred HhhcCCCCCchhHHHHHHH
Q 015342 107 FLSQIPDFDQIWWLSIVAA 125 (408)
Q Consensus 107 pl~~~~~l~~L~~~S~~~~ 125 (408)
..+..-=++...++..+=.
T Consensus 133 iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 133 IYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp HTTCTT------SHHHHHH
T ss_pred HhhhhhhHhhhhHHHHHHH
Confidence 5666666777777665543
No 60
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.83 E-value=8.9 Score=39.29 Aligned_cols=66 Identities=14% Similarity=-0.012 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 015342 166 KIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFA 234 (408)
Q Consensus 166 ~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v 234 (408)
..|....++-.-+..+.|--.-..+-+|-||++ ++-+|.+..+.++..++-.++-+.-...-++|.
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 456666666656666666666778888999983 789999999998888887777776667777653
No 61
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.30 E-value=4.9 Score=41.80 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=48.3
Q ss_pred HHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015342 167 IWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCM 225 (408)
Q Consensus 167 ~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~ 225 (408)
+-+.+.++.+..|+|.|.-.+-.--+|-||| +|+.++++..++..+..+|..+.+.
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888999999988888888999999 4889999999999999999988664
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=92.97 E-value=11 Score=37.63 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=53.6
Q ss_pred cccHHHHHHHHccCC-cceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHh
Q 015342 30 NYTYMDAVRSILGGA-KVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFL 108 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl 108 (408)
..|..|.-++-||++ .|.+..+...+..+....+.+...|..++.+.. .+...-+++.++++..-
T Consensus 65 ~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Y 130 (407)
T TIGR00813 65 AYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILY 130 (407)
T ss_pred CCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHH
Confidence 689999999999984 677777777888888888888888877766542 11222233444444444
Q ss_pred hcCCCCCchhHHHHHH
Q 015342 109 SQIPDFDQIWWLSIVA 124 (408)
Q Consensus 109 ~~~~~l~~L~~~S~~~ 124 (408)
+..--++...++-.+=
T Consensus 131 t~~GG~~av~~Td~iQ 146 (407)
T TIGR00813 131 TVFGGLKAVVWTDTIQ 146 (407)
T ss_pred HHHcchHHHHHHHHHH
Confidence 5555666666665443
No 63
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=92.92 E-value=13 Score=38.31 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=56.5
Q ss_pred ccccHHHHHHHHcc-CCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHH
Q 015342 29 RNYTYMDAVRSILG-GAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIF 107 (408)
Q Consensus 29 ~~~sY~dl~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~p 107 (408)
+..|.+|.-++=|| ++.|.+..+...+..++-+..-+...++.++.... .+...-+++.+.++..
T Consensus 103 ~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~ 168 (493)
T COG0591 103 GATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVAL 168 (493)
T ss_pred CCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHH
Confidence 37899999999999 89999999999999999999999989887744422 1112112233334444
Q ss_pred hhcCCCCCchhHHHHH
Q 015342 108 LSQIPDFDQIWWLSIV 123 (408)
Q Consensus 108 l~~~~~l~~L~~~S~~ 123 (408)
-+.+--+++..|+..+
T Consensus 169 Yt~~gG~~av~~Td~i 184 (493)
T COG0591 169 YTFLGGLRAVVWTDFI 184 (493)
T ss_pred HHHHcChhHHHHHHHH
Confidence 4555566677766544
No 64
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=92.77 E-value=13 Score=38.13 Aligned_cols=195 Identities=16% Similarity=0.156 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcccc
Q 015342 3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFH 82 (408)
Q Consensus 3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~ 82 (408)
++|.+-+..+.=|.+++... |. .-+|...+.+.-+|.....+...-.++-.-++-.-++..+..++...+
T Consensus 86 i~G~~vy~vm~sLGEma~~~-P~----sGsF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p----- 155 (541)
T COG0833 86 IIGIMVYFVMQSLGELAVFY-PV----SGSFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP----- 155 (541)
T ss_pred HHHHHHHHHHHHHHHHHhhc-CC----CCchhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC-----
Confidence 45666666666677755321 22 235887788877776555555444433333333333334433333221
Q ss_pred CCCCCCCCccCCchhHHHHHHHHHHhh--cCCCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccc-
Q 015342 83 ESGGNNPCHMSSNPYMILFGVMEIFLS--QIPDFDQIWWL-SIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISI- 158 (408)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~v~~pl~--~~~~l~~L~~~-S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~- 158 (408)
+ ..+...|..++.++++.+- -.|-..+-.++ |.+=++..+.|+.+.+.+ +.-+.+++ ..-+.++
T Consensus 156 -~------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~-~~Gg~~~~----~~ig~~yw 223 (541)
T COG0833 156 -D------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIII-ICGGGPTH----GYIGFNYW 223 (541)
T ss_pred -C------CCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHH-hcCCCCCC----CCcceeee
Confidence 0 1134557666665554443 45667776654 555544444343222211 11111211 1111111
Q ss_pred -ccccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhh
Q 015342 159 -GTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLC 222 (408)
Q Consensus 159 -~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~v 222 (408)
++-...+.+.++...+-+..|||.|.-.+----.|-+|| +|..+|+++..+.=+.++|...
T Consensus 224 ~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi~s 285 (541)
T COG0833 224 HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP---RKSIPKAIKQVFWRILLFYILS 285 (541)
T ss_pred cCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc---hhhhHHHHHHHHHHHHHHHHHH
Confidence 111112224455566777889999987776667789999 4779999999998888888765
No 65
>PRK12488 acetate permease; Provisional
Probab=91.80 E-value=18 Score=37.66 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=52.2
Q ss_pred cccHHHHHHHHcc-CCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHh
Q 015342 30 NYTYMDAVRSILG-GAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFL 108 (408)
Q Consensus 30 ~~sY~dl~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl 108 (408)
..|.+|.-++=|| |+.|.+..+...+..+.-..+-+.-.|..++.+.. .+...-+++.++++..-
T Consensus 129 ~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Y 194 (549)
T PRK12488 129 KYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLY 194 (549)
T ss_pred CcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHH
Confidence 5799999888887 56888877777777776666666667766655532 11222234444555555
Q ss_pred hcCCCCCchhHHHHHH
Q 015342 109 SQIPDFDQIWWLSIVA 124 (408)
Q Consensus 109 ~~~~~l~~L~~~S~~~ 124 (408)
+..-=++...|+..+=
T Consensus 195 t~~GGm~av~~td~iQ 210 (549)
T PRK12488 195 VTFGGMLATTWVQIIK 210 (549)
T ss_pred HhccchhHHHHHHHHH
Confidence 5666677777776554
No 66
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=89.18 E-value=26 Score=35.10 Aligned_cols=46 Identities=9% Similarity=-0.039 Sum_probs=40.1
Q ss_pred ccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHH
Q 015342 31 YTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIK 76 (408)
Q Consensus 31 ~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~ 76 (408)
.+-.|..++-|+|+..++..+...+...+++++-.+-.+-.++.+.
T Consensus 77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677788888999999999999999999999999999888877764
No 67
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=81.91 E-value=8 Score=38.22 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=43.0
Q ss_pred ccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHH
Q 015342 29 RNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIK 76 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~ 76 (408)
+..--.+++++.||+.|+.++.+.+.+.|++++++.+...+|.+..+.
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~ 300 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLV 300 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677999999999999999999999999999999999998877763
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=78.47 E-value=90 Score=32.56 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=46.4
Q ss_pred cccHHHHHHHHccC-CcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHh
Q 015342 30 NYTYMDAVRSILGG-AKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFL 108 (408)
Q Consensus 30 ~~sY~dl~~~~~G~-~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl 108 (408)
..|..|.-++=||. ..|.+..+...+..+.-..+.+.-.|..++.+.. .+...-+++.++++..-
T Consensus 129 ~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Y 194 (549)
T TIGR02711 129 RYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMY 194 (549)
T ss_pred CccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHH
Confidence 57999998888874 4666666666666555555555556665555432 11222234444444454
Q ss_pred hcCCCCCchhHHHHH
Q 015342 109 SQIPDFDQIWWLSIV 123 (408)
Q Consensus 109 ~~~~~l~~L~~~S~~ 123 (408)
...-=++...|+-.+
T Consensus 195 t~~GGm~av~~td~i 209 (549)
T TIGR02711 195 VLFGGMLATTWVQII 209 (549)
T ss_pred HHhhhhHHHHHHHHH
Confidence 555556666666544
No 69
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=71.42 E-value=1.3e+02 Score=30.97 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=43.2
Q ss_pred cccHHHHHHHHccCCcce---ehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHH
Q 015342 30 NYTYMDAVRSILGGAKVK---ACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEI 106 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~---~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~ 106 (408)
..|-.|.-++=||++.|. +..+...+..+.-+.+-+...|..++.+.. .+...-+++.+.+++
T Consensus 107 ~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~ 172 (502)
T PRK15419 107 ALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATI 172 (502)
T ss_pred ceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHH
Confidence 678999999999975443 333444444444444444445555544421 122223444445555
Q ss_pred HhhcCCCCCchhHHHHH
Q 015342 107 FLSQIPDFDQIWWLSIV 123 (408)
Q Consensus 107 pl~~~~~l~~L~~~S~~ 123 (408)
.-+..-=++...++-.+
T Consensus 173 iYt~~GGl~aV~~TD~i 189 (502)
T PRK15419 173 LYTFIGGFLAVSWTDTV 189 (502)
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 55566566666666544
No 70
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=69.26 E-value=68 Score=34.47 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=79.5
Q ss_pred hhhCCCCchhhhhHHHHHHHHHHHHHHHHhh-hhhhhh--------ccCCCCCCccccccCcCCC-hHHHHHHHH----H
Q 015342 192 DTLKSPPAESKTMKKAAKLSIAVTTAFYMLC-GCMGYA--------AFGDFAPGNLLTGFGFYNP-FWLLDIANA----A 257 (408)
Q Consensus 192 ~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~v-g~~gY~--------~fG~~v~~~il~n~~~~~~-~~~~~~~~~----~ 257 (408)
.++||| +|..+.-...|...+..+|+.- -++|-- .||+++.+|..-.- +.=| .|.+.+... .
T Consensus 434 GDLkDa---QkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~-laWPsPwVi~IGsFlST~G 509 (1075)
T KOG2082|consen 434 GDLKDA---QKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVAT-LAWPSPWVIVIGSFLSTCG 509 (1075)
T ss_pred ccccch---hhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEE-ecCCCceeeehhHHHHHhH
Confidence 467887 3667777778888888887654 333322 68888888765431 1112 343333222 2
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCC---C--CcccchhhHHHHHHHHHHHHHHHHHccch
Q 015342 258 IVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGL---L--PYKLNLFRLVWRSCFVILTTVISMLLPFF 332 (408)
Q Consensus 258 ~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~---~--~~~~~~~r~~~r~~~v~~~~~lA~~vP~~ 332 (408)
-.++.+++-|=.+ +.+.+ |. -+|.+ + +.+.-..|-.+-| +++.-.++.+-++
T Consensus 510 AgLQsLtgAPRLL----QAIAk-------D~---------IiPfL~~F~~~~~ngEPt~aLlLT---~~Ice~gILigsl 566 (1075)
T KOG2082|consen 510 AGLQSLTGAPRLL----QAIAK-------DD---------IIPFLAPFGHGKANGEPTWALLLT---AIICECGILIGSL 566 (1075)
T ss_pred HHHhhhcCcHHHH----HHHhh-------cC---------ccchhhhhccccCCCCccHHHHHH---HHHHHhhheeech
Confidence 3345555555222 11111 10 01110 1 0111123333333 4445667777777
Q ss_pred HHHHHHhhhhhhhhhHhhhhHH---HHHHhhccCccchhH-HHHHHHHHHHHHHHH
Q 015342 333 NDVVGILGALGFWPLTVYFPVE---MYIAQKKITKWSTRW-MCLQMLSMACLVLSI 384 (408)
Q Consensus 333 ~~v~~l~Ga~~~~~l~fi~P~l---~~lk~~~~~~~~~~~-~~~~~~~~~g~~~~v 384 (408)
+.+-.++.=+ ..+||.|=-+ ..-.+ +.+.|++++ ..+|.+..+|..+++
T Consensus 567 D~iApilsmF--FLMCY~fVNLaCavqtLL-rtPnWRPRfkyyHW~LSflG~sLC~ 619 (1075)
T KOG2082|consen 567 DLIAPILSMF--FLMCYLFVNLACAVQTLL-RTPNWRPRFKYYHWSLSFLGASLCL 619 (1075)
T ss_pred hHHHHHHHHH--HHHHHHHHhHHHHHHHHh-cCCCCCccchhhhhHHHHHHHHHHH
Confidence 7666555322 2455444321 12112 456677665 356887777655443
No 71
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=64.44 E-value=52 Score=33.01 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=41.5
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRS 78 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~ 78 (408)
-.++.-++|..||.+|+.+..+...+...|-...-..+.|+.+..+.+.
T Consensus 70 Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 70 GLPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp ---HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999999999999999999999888889999999998764
No 72
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=64.25 E-value=88 Score=31.49 Aligned_cols=86 Identities=21% Similarity=0.376 Sum_probs=60.1
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhh
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLS 109 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~ 109 (408)
..=-.+++++.+|+.|..+..+.+.+-|+-++++-....+|.+++..+. .+.+.|.++++.+-+.++
T Consensus 260 ~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------------isY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 260 AELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------------ISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cChHHHHHHHHHHHHHHH
Confidence 4557788999999999999999999999999999999999999887642 234455555554544554
Q ss_pred cCCCCCchhHHHHHHHHHHHHH
Q 015342 110 QIPDFDQIWWLSIVAAVMSFTY 131 (408)
Q Consensus 110 ~~~~l~~L~~~S~~~~~~~~~~ 131 (408)
.+ -++++--.| .-+..+.|
T Consensus 327 n~-Gl~~Ii~~s--~PiL~~iY 345 (427)
T PF05525_consen 327 NL-GLDQIIKIS--VPILMFIY 345 (427)
T ss_pred Hh-CHHHHHHHH--HHHHHHHh
Confidence 32 334433333 33444444
No 73
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=59.75 E-value=75 Score=31.71 Aligned_cols=79 Identities=18% Similarity=0.346 Sum_probs=58.1
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhh
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLS 109 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~ 109 (408)
..=-.+..++.||+.|+.+..+++.+-|+-++++-+...+|.+..+.+. .+...|..+++.+-+.++
T Consensus 262 ~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflva 328 (431)
T COG1114 262 GQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVA 328 (431)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999999999998887652 234456666665555554
Q ss_pred cCCCCCchhHHHH
Q 015342 110 QIPDFDQIWWLSI 122 (408)
Q Consensus 110 ~~~~l~~L~~~S~ 122 (408)
.+ .++++-..|.
T Consensus 329 n~-GL~~Ii~isv 340 (431)
T COG1114 329 NL-GLEQIIKISV 340 (431)
T ss_pred Hh-hHHHHHHHHH
Confidence 33 3455544553
No 74
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=59.27 E-value=45 Score=32.73 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=38.4
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHH
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMM 73 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~ 73 (408)
-+|.+|++++..||++|.+..+...+.+.-...++....++.+.
T Consensus 113 G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 113 GKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46999999999999999999999999988888888877776553
No 75
>PRK00701 manganese transport protein MntH; Reviewed
Probab=56.82 E-value=2.3e+02 Score=28.72 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=34.1
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHH
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAI 75 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i 75 (408)
..+-.|+.++-|||+..++..+...+-+.++.++-++-.+..++.+
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998888777777777777777666665555443
No 76
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=53.08 E-value=2.7e+02 Score=28.46 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=41.7
Q ss_pred ccccHHHHHHHHccCCccee---hHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHH
Q 015342 29 RNYTYMDAVRSILGGAKVKA---CGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVME 105 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~~~~---~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~ 105 (408)
+..|-.|.-++=||++.|.+ ..+...+........-+...|..++.+.. .+....+++.++++
T Consensus 102 ~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~ 167 (487)
T TIGR02121 102 NSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALII 167 (487)
T ss_pred CCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHH
Confidence 36789999999999765433 33333333333334444445555554431 11222233444444
Q ss_pred HHhhcCCCCCchhHHHHH
Q 015342 106 IFLSQIPDFDQIWWLSIV 123 (408)
Q Consensus 106 ~pl~~~~~l~~L~~~S~~ 123 (408)
..-+..-=++...++-.+
T Consensus 168 ~~Yt~~GGl~av~~TD~i 185 (487)
T TIGR02121 168 VIYTFFGGFLAVSWTDFV 185 (487)
T ss_pred HHHHHhhhHHHHHHHHHH
Confidence 444555556666666544
No 77
>PRK10484 putative transporter; Provisional
Probab=48.97 E-value=3.2e+02 Score=28.19 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=22.3
Q ss_pred ccccHHHHHHHHccCCcceehHHHHHHHHh
Q 015342 29 RNYTYMDAVRSILGGAKVKACGLIQYLNLF 58 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~ 58 (408)
+..|-.|.-++=||++.+.+......+...
T Consensus 99 ~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~ 128 (523)
T PRK10484 99 GITTIPDFLEERYDKTTRRIVSILFLIGYV 128 (523)
T ss_pred CCccHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 367999999999999888776665444333
No 78
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=44.32 E-value=85 Score=28.14 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=36.8
Q ss_pred ccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHH
Q 015342 31 YTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAI 75 (408)
Q Consensus 31 ~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i 75 (408)
...+|.+...|.|.+--+..+++++++||-.-.|--.+--+..++
T Consensus 130 vemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 130 VEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence 456788889999999999999999999999999977665554444
No 79
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=43.81 E-value=3.3e+02 Score=26.90 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=23.7
Q ss_pred cchhHhhhh-hhCCCCchhhhhHHHHHHHHHHH---HHHHHhhhhhhh
Q 015342 184 SVILIEIQD-TLKSPPAESKTMKKAAKLSIAVT---TAFYMLCGCMGY 227 (408)
Q Consensus 184 ~~~~~~i~~-~m~~p~~~~~~~~~~~~~s~~~~---~~~Y~~vg~~gY 227 (408)
-..+-.+.+ |++|| +|+.++....+.... ..+|...+..|-
T Consensus 197 ~iiv~~i~~~g~~~~---~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa 241 (378)
T TIGR00796 197 IIVVNAIRSRGVTKP---KKITKYTIKAGLIAAVLLAFIYLSLFYLGA 241 (378)
T ss_pred HHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566 89998 466777777766333 333444444443
No 80
>PRK09395 actP acetate permease; Provisional
Probab=42.76 E-value=4.1e+02 Score=27.65 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=47.5
Q ss_pred cccHHHHHHHHccC-CcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHh
Q 015342 30 NYTYMDAVRSILGG-AKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFL 108 (408)
Q Consensus 30 ~~sY~dl~~~~~G~-~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl 108 (408)
..|+.|.-++=||+ +.|.+..+...+..+....+-+.-.|..++.+.. .+...-+++.++++..-
T Consensus 131 ~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iY 196 (551)
T PRK09395 131 KYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVY 196 (551)
T ss_pred CccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHH
Confidence 58999999999984 5777777766665555555555556655555431 12222334444455555
Q ss_pred hcCCCCCchhHHHHH
Q 015342 109 SQIPDFDQIWWLSIV 123 (408)
Q Consensus 109 ~~~~~l~~L~~~S~~ 123 (408)
+..-=++...|+-.+
T Consensus 197 t~~GGm~av~~TD~i 211 (551)
T PRK09395 197 VLFGGMLATTWVQII 211 (551)
T ss_pred HhhcchHHHHHHHHH
Confidence 555556666666543
No 81
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=40.67 E-value=31 Score=22.77 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 204 MKKAAKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 204 ~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
|..+...++.+..++-.++|..-|.+||..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 555666777777777777888888899865
No 82
>CHL00020 psbN photosystem II protein N
Probab=34.71 E-value=33 Score=22.32 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 207 AAKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 207 ~~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
+...++.+..++-.++|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 445566666677777777778888865
No 83
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=33.81 E-value=1e+02 Score=28.13 Aligned_cols=77 Identities=10% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHccchHHHHHHh---------hhhhhhhhHhhhhHHHHHHhhccCc------cchhHHHHHHHHHHHH
Q 015342 316 SCFVILTTVISMLLPFFNDVVGIL---------GALGFWPLTVYFPVEMYIAQKKITK------WSTRWMCLQMLSMACL 380 (408)
Q Consensus 316 ~~~v~~~~~lA~~vP~~~~v~~l~---------Ga~~~~~l~fi~P~l~~lk~~~~~~------~~~~~~~~~~~~~~g~ 380 (408)
-..++.++++|..++.++-+++.+ ||.++..++++= |..+-+... -.-.|+ .|+++++|+
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wL-wwi~~vlG~ 234 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWL-WWIFLVLGL 234 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHH-HHHHHHHHH
Confidence 345566778888888888777765 777877777764 333322111 011233 356778888
Q ss_pred HHHHHHHHH--HHHHHHHh
Q 015342 381 VLSIIAGAG--SIVGVVND 397 (408)
Q Consensus 381 ~~~v~gt~~--si~~ii~~ 397 (408)
++.+-|++. .++.+=++
T Consensus 235 ll~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 235 LLFLRGFINYIKVRRMEEK 253 (262)
T ss_pred HHHHHHHHhHHHHhhHHHH
Confidence 887776653 44444333
No 84
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=33.57 E-value=1.5e+02 Score=29.98 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=50.7
Q ss_pred cHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhhcC
Q 015342 32 TYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQI 111 (408)
Q Consensus 32 sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~ 111 (408)
=-....++.+|++++.+..+.+.+-|+-++++-....+|-+.+..+ .+.+.|.++..++.++++..
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999987766532 23445566666666666643
No 85
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=31.15 E-value=42 Score=21.88 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 208 AKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 208 ~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
...++.+..++-.++|...|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 44556666677777777778899854
No 86
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=31.09 E-value=70 Score=22.61 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=18.6
Q ss_pred hhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 015342 193 TLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYA 228 (408)
Q Consensus 193 ~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~ 228 (408)
--++| +++.|.++...+.. -..++|++||.
T Consensus 23 ~~~KP--d~~Ef~~ia~~~~i----G~~i~G~iGf~ 52 (61)
T PRK09400 23 VARKP--TREEFLLVAKVTGL----GILLIGLIGFI 52 (61)
T ss_pred HhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34677 66788886665432 33466777775
No 87
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=30.50 E-value=74 Score=22.52 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=18.7
Q ss_pred hCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 015342 194 LKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAA 229 (408)
Q Consensus 194 m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~ 229 (408)
-++| +++.|.++...+. +-..++|+.||..
T Consensus 20 ~~KP--d~~Ef~~iak~t~----iG~~i~G~IGf~I 49 (61)
T TIGR00327 20 CKKP--DLEEYLKVAKVTG----IGIIIVGIIGYII 49 (61)
T ss_pred hcCC--CHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4677 6678888665543 2334677777764
No 88
>PRK12768 CysZ-like protein; Reviewed
Probab=30.03 E-value=4.4e+02 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.1
Q ss_pred hhhCCCCchhhhhHHHHHHHHHHHHHHHHhhh
Q 015342 192 DTLKSPPAESKTMKKAAKLSIAVTTAFYMLCG 223 (408)
Q Consensus 192 ~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg 223 (408)
.++.|| ++++++..+.+.+..++...+
T Consensus 10 ~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 10 ARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 567776 788899998888888877764
No 89
>PRK09950 putative transporter; Provisional
Probab=28.43 E-value=4.8e+02 Score=26.99 Aligned_cols=87 Identities=10% Similarity=0.123 Sum_probs=46.8
Q ss_pred hhhHHHHHHhhhhhHHHHHhhccccCC-CCCCCCccCCchhHHHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHHH
Q 015342 58 FGIAIGYTIAASISMMAIKRSNCFHES-GGNNPCHMSSNPYMILFGVMEIFLSQIPD-FDQIWWLSIVAAVMSFTYSAIG 135 (408)
Q Consensus 58 ~g~~v~y~i~~~d~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~i~~~v~~pl~~~~~-l~~L~~~S~~~~~~~~~~~~i~ 135 (408)
.-.+..|++...|+-..+....+-+.+ +.+++-.+.|..|.++.+.+..-|.+... ++.|+-.+.++.+ =+.++.+.
T Consensus 409 ~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~al-P~~~i~~l 487 (506)
T PRK09950 409 LGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTAL-PFLVILLI 487 (506)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHH
Confidence 445567888889988888776433221 11222233455676666555444444554 8888888766543 12222233
Q ss_pred HHHHHHHHhh
Q 015342 136 LALGIVQVAA 145 (408)
Q Consensus 136 ~~~~i~~~~~ 145 (408)
...++.|..+
T Consensus 488 ~~~s~~k~l~ 497 (506)
T PRK09950 488 KVYGFIRWLK 497 (506)
T ss_pred HHHHHHHHHh
Confidence 3344555553
No 90
>TIGR00909 2A0306 amino acid transporter.
Probab=28.43 E-value=4.1e+02 Score=26.29 Aligned_cols=48 Identities=8% Similarity=-0.046 Sum_probs=41.3
Q ss_pred ccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Q 015342 31 YTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRS 78 (408)
Q Consensus 31 ~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~ 78 (408)
....++.++..|+++..++.+...+.+++.+.+.+...+..+....++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356788888899999999999999999999999999998888777654
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.10 E-value=1.3e+02 Score=24.61 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015342 373 QMLSMACLVLSIIAGAGSIVGVVNDVKA 400 (408)
Q Consensus 373 ~~~~~~g~~~~v~gt~~si~~ii~~~~~ 400 (408)
...+++|++.+|+|++.-+.=.+++.++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888888888888777777765544
No 92
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=24.36 E-value=2.1e+02 Score=25.46 Aligned_cols=63 Identities=13% Similarity=-0.017 Sum_probs=37.9
Q ss_pred HHHHHhhhhhhhhhHhhhhHHHHHHhhccCcc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015342 334 DVVGILGALGFWPLTVYFPVEMYIAQKKITKW----------STRWMCLQMLSMACLVLSIIAGAGSIVGVVN 396 (408)
Q Consensus 334 ~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~~----------~~~~~~~~~~~~~g~~~~v~gt~~si~~ii~ 396 (408)
+..-..|++.+.-+..++|+...+..+|++-. +-....-.+...+|++..+-...-|..++.+
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456788888899999999999999875321 1122222333444555555444555555554
No 93
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.83 E-value=2e+02 Score=25.24 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCccccccCcCCChHHHHHHHHHHHHHHHHhhhccccc
Q 015342 202 KTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQP 272 (408)
Q Consensus 202 ~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 272 (408)
|+.+|.+...+=....+..++|+..-..|-++. .+-+.+ +.+.|.-...-..+.++.+..+..+..|
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nly--SlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLY--SLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cccchh--hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667788999999999999999996666665553 333322 2467766666667777777766555444
No 94
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=21.88 E-value=7.3e+02 Score=23.98 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=50.5
Q ss_pred ccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhhc
Q 015342 31 YTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQ 110 (408)
Q Consensus 31 ~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~ 110 (408)
.+-.|..++-+||+..+...+...+-+.....+-++-.+..++.+.. .+...+.++.++..+-+.+
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~ 107 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLW 107 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHH
Confidence 46777888888999888888888888888888877777766655431 1233444444433333333
Q ss_pred --CCCCCchhHHHH
Q 015342 111 --IPDFDQIWWLSI 122 (408)
Q Consensus 111 --~~~l~~L~~~S~ 122 (408)
.++.+.+.....
T Consensus 108 ~~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 108 LSSGGYRRLERILK 121 (358)
T ss_pred HHhccchHHHHHHH
Confidence 566777766653
No 95
>PLN02680 carbon-monoxide oxygenase
Probab=21.64 E-value=3e+02 Score=25.17 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCccccccCcCCChHHHHHHHHHHHHHHHHhhhccccc
Q 015342 202 KTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQP 272 (408)
Q Consensus 202 ~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 272 (408)
|+.+|.+...+=....+...+|+..-..+-++ .++-+-+ +.+.|+-...-+.+.++.+..+..+..|
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfy--SlHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFY--SLHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 67888899999889999999999665555444 3332222 2467866666666777777666544444
No 96
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=21.63 E-value=2.4e+02 Score=25.93 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=56.4
Q ss_pred chhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCccccccCcCCChHHHHHHHHHHHHHHHH
Q 015342 185 VILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVG 264 (408)
Q Consensus 185 ~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~ 264 (408)
+...=+|+.-+. +.|+.+|.+....=++...-.++|+..-..+-+... ..|+ -+.+.|....+-.++.++.+.
T Consensus 71 GeAiL~YR~~r~---~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~Nf-ySLHSWlGl~~v~ly~~Q~v~ 143 (245)
T KOG1619|consen 71 GEAILIYRVFRY---TSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANF-YSLHSWLGLCVVILYSLQWVF 143 (245)
T ss_pred cceeeeeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccce-eeHHHHHHHHHHHHHHHHHHH
Confidence 333335555333 348899999999999999999999988888887765 2332 124678766666777777777
Q ss_pred hhhcccccH
Q 015342 265 AYQVFCQPI 273 (408)
Q Consensus 265 sypl~~~p~ 273 (408)
.|-.+.+|.
T Consensus 144 GF~tfl~pg 152 (245)
T KOG1619|consen 144 GFFTFLFPG 152 (245)
T ss_pred HHHHHhcCC
Confidence 765554443
No 97
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=21.57 E-value=7.3e+02 Score=25.24 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=39.6
Q ss_pred hhhHHHHHHhhhhhHHHHHhhcccc-CCCCCCCCccCCchhHHHHHHHHHHhhcCCC-CCchhHHHHHHH
Q 015342 58 FGIAIGYTIAASISMMAIKRSNCFH-ESGGNNPCHMSSNPYMILFGVMEIFLSQIPD-FDQIWWLSIVAA 125 (408)
Q Consensus 58 ~g~~v~y~i~~~d~l~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~-l~~L~~~S~~~~ 125 (408)
.-.+..|++...|+-..+....+-+ .+.++++-...+..|.++.+.+..-+..... ++.++-.+.++.
T Consensus 363 ~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~~ii~a 432 (453)
T TIGR00842 363 LIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLLFSGGSLAALQTTAIIAA 432 (453)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3455668888899888877754321 1111122233455676666655444444545 888888876654
No 98
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=21.51 E-value=1.6e+02 Score=26.76 Aligned_cols=22 Identities=18% Similarity=-0.032 Sum_probs=11.6
Q ss_pred HHHHHHHhhcCCCCCchh-HHHHH
Q 015342 101 FGVMEIFLSQIPDFDQIW-WLSIV 123 (408)
Q Consensus 101 ~~~v~~pl~~~~~l~~L~-~~S~~ 123 (408)
++++++|| +++.++... |+|+.
T Consensus 123 ~a~~lFPl-WP~~~r~gv~YlS~~ 145 (224)
T PF03839_consen 123 IAICLFPL-WPRWMRQGVYYLSVG 145 (224)
T ss_pred HHHHhhhc-ChHHHhheeehhHHH
Confidence 34555665 555555433 55644
No 99
>PLN02351 cytochromes b561 family protein
Probab=21.20 E-value=2.5e+02 Score=25.86 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=45.5
Q ss_pred hhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCccccccCcCCChHHHHHHHHHHHHHHHHhhhccc
Q 015342 191 QDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFC 270 (408)
Q Consensus 191 ~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~ 270 (408)
++.++.+ |+.+|.+....-....+..++|+.. .|-++ ++...|+- +.+.|.....-..+.++.+..+..+.
T Consensus 73 YR~~~~~----~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nly-SLHSWlGl~tv~Lf~lQwv~Gf~~F~ 143 (242)
T PLN02351 73 HRWLPGS----RKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFY-SLHSWMGLICVSLFGAQWLTGFMSFW 143 (242)
T ss_pred hhccccc----chHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445544 5568889998888888888888866 44433 23444431 24678666666667777776665444
Q ss_pred cc
Q 015342 271 QP 272 (408)
Q Consensus 271 ~p 272 (408)
.|
T Consensus 144 ~P 145 (242)
T PLN02351 144 HR 145 (242)
T ss_pred cC
Confidence 44
No 100
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=20.69 E-value=1e+02 Score=22.65 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHhhcccc-CCCcCCcccccHHHHH
Q 015342 2 FLFSFVTYYTSSLLTDCYRT-ADPVFGKRNYTYMDAV 37 (408)
Q Consensus 2 ~~~~~~~~ys~~lL~~~~~~-~~~~~~~~~~sY~dl~ 37 (408)
..++++..+-..|++||.|- .||.......|++|=.
T Consensus 32 aFV~~L~~fL~~liVRCfrIllDPYssmPtStW~d~~ 68 (81)
T PF11057_consen 32 AFVGLLCLFLGLLIVRCFRILLDPYSSMPTSTWTDHK 68 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcChhhcCCcchhhhhh
Confidence 35678889999999999874 3555444556776643
No 101
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=20.31 E-value=9.8e+02 Score=24.84 Aligned_cols=80 Identities=9% Similarity=0.106 Sum_probs=47.1
Q ss_pred cccHHHHHHHHccCC-cceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHh
Q 015342 30 NYTYMDAVRSILGGA-KVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFL 108 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl 108 (408)
..|-.|.-++=||++ .|.+..+...+..+....+.+...+..++.+.. .+...-+++.++++..-
T Consensus 94 ~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iY 159 (552)
T TIGR03648 94 KYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFY 159 (552)
T ss_pred CccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHH
Confidence 578888888888855 566666666666666666666666666655532 11222233444444444
Q ss_pred hcCCCCCchhHHHHH
Q 015342 109 SQIPDFDQIWWLSIV 123 (408)
Q Consensus 109 ~~~~~l~~L~~~S~~ 123 (408)
+..-=++...|+-.+
T Consensus 160 t~~GG~~aV~~TD~i 174 (552)
T TIGR03648 160 AVLGGMKGVTWTQVA 174 (552)
T ss_pred HHhhhHHHHHHHHHH
Confidence 555556666666443
No 102
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=20.10 E-value=2.4e+02 Score=19.38 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015342 371 CLQMLSMACLVLSIIAGAGSIVGVVNDV 398 (408)
Q Consensus 371 ~~~~~~~~g~~~~v~gt~~si~~ii~~~ 398 (408)
..+++.+++.+-.|.|.|-+|++-+++-
T Consensus 8 lLyFctvVcaLYLvsGGyk~IRnY~r~K 35 (59)
T PF07125_consen 8 LLYFCTVVCALYLVSGGYKVIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3567788888889999999999988754
No 103
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.09 E-value=1e+03 Score=24.89 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=40.0
Q ss_pred ccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Q 015342 31 YTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRS 78 (408)
Q Consensus 31 ~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~ 78 (408)
....++=..+.|+++...+..++++..+..+++-++..........++
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 567888899999999999999999999999999888877766555443
Done!