Query 015342
Match_columns 408
No_of_seqs 112 out of 1094
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:56:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.9 1.4E-07 4.8E-12 93.6 22.4 205 3-233 48-253 (445)
2 3gia_A Uncharacterized protein 98.6 2.2E-05 7.5E-10 77.7 26.3 197 3-231 47-248 (444)
3 4djk_A Probable glutamate/gamm 98.4 4.2E-05 1.4E-09 77.1 23.8 185 32-233 74-263 (511)
4 2jln_A MHP1; hydantoin, transp 97.0 0.06 2.1E-06 53.9 19.7 87 30-126 87-173 (501)
5 3dh4_A Sodium/glucose cotransp 93.4 6.9 0.00024 39.1 24.1 82 29-124 81-163 (530)
6 2xq2_A Sodium/glucose cotransp 84.0 38 0.0013 34.1 22.8 82 29-124 110-192 (593)
7 3mp7_B Preprotein translocase 28.2 55 0.0019 22.2 3.3 30 193-228 21-50 (61)
8 3l1l_A Arginine/agmatine antip 28.1 3.7E+02 0.013 25.0 12.9 49 30-78 259-307 (445)
9 1afo_A Glycophorin A; integral 23.5 1.3E+02 0.0045 18.2 4.2 25 374-398 13-37 (40)
10 1rh5_B Preprotein translocase 22.6 70 0.0024 22.6 3.1 31 193-229 25-55 (74)
11 2ww9_B Protein transport prote 22.2 81 0.0028 22.6 3.3 31 192-228 37-67 (80)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.92 E-value=1.4e-07 Score=93.60 Aligned_cols=205 Identities=10% Similarity=-0.041 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcccc
Q 015342 3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFH 82 (408)
Q Consensus 3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~ 82 (408)
+.+++.........+...+. |. .-++-+.+++.+||+...+......+.......++....++.+...++.
T Consensus 48 i~~~~~~~~a~~~~el~~~~-p~----~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 118 (445)
T 3l1l_A 48 VTIIGALGLSMVYAKMSFLD-PS----PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI---- 118 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CC----TTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----
T ss_pred HHHHHHHHHHHHHHHHHccC-CC----CCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----
Confidence 34455555555555554331 22 2256667899999998888888887776666666666666655433221
Q ss_pred CCCCCCCCccCCchhHHHHHHH-HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccc
Q 015342 83 ESGGNNPCHMSSNPYMILFGVM-EIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTV 161 (408)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~v-~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (408)
. ..+...+.+...++ .+-....+..+..+.+..+.....+. ..+...+ -+....+.+ ...+ ++. +
T Consensus 119 -~------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~---~~~~~~i-~~~~~~~~~-~~~~-~~~-~ 184 (445)
T 3l1l_A 119 -L------KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI---PIVGIAV-FGWFWFRGE-TYMA-AWN-V 184 (445)
T ss_dssp -G------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHHHHH-TTSTTCCCC-CCCC-C----
T ss_pred -c------cccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHhChh-hccc-ccC-c
Confidence 0 00001111111111 11112233445555554333222221 1111111 111111111 1110 110 1
Q ss_pred cchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 162 TQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 162 ~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
.......+.+.++....|+|.|........+|+||| +|+.+|++..+...+.++|...........+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 185 SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp --------HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 111123456688889999999999999999999999 478999999999999999999988766666543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.59 E-value=2.2e-05 Score=77.66 Aligned_cols=197 Identities=7% Similarity=0.026 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCC--cceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcc
Q 015342 3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGA--KVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNC 80 (408)
Q Consensus 3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~--~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~ 80 (408)
+.+++.......+.+...+. |. .-+.-+.+++.+||+ +.. +.....+.....+..+....++.+...++.
T Consensus 47 i~~~~~~~~~~~~~el~~~~-P~----~Gg~y~~~~~~~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 118 (444)
T 3gia_A 47 LSGIYALLVAYSYTKLGAKI-VS----NAGPIAFIHKAIGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINA-- 118 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CC----TTTHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHhhC-CC----CCcHHHhHHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 45555666666666655432 22 234567788999996 222 233344444445555555666666554321
Q ss_pred ccCCCCCCCCccCCchhHHHHH--HH-HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccc
Q 015342 81 FHESGGNNPCHMSSNPYMILFG--VM-EIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGIS 157 (408)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~--~v-~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~ 157 (408)
. ....+..+.+ ++ .+-....+..+..+.+..+.....+....+.+...+.. .++ ++..+.
T Consensus 119 ---~--------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~---~~~--~~~~~~- 181 (444)
T 3gia_A 119 ---P--------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLIT---IHP--SYVIPD- 181 (444)
T ss_dssp ---C--------CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCG--GGTSCC-
T ss_pred ---C--------CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCh--hhcCCC-
Confidence 0 1111211111 11 11122233455555554433322222111111112221 111 111110
Q ss_pred cccccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 015342 158 IGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFG 231 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG 231 (408)
.......+.+.++....|+|.|........+|+||| +|+.+|++..+...+.++|....+......+
T Consensus 182 ----~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 182 ----LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp ----CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ----CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 112223456778888899999999999999999999 4779999999999999999988776555544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.43 E-value=4.2e-05 Score=77.08 Aligned_cols=185 Identities=10% Similarity=-0.013 Sum_probs=98.3
Q ss_pred cHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCc-hhHHHHHHH-HHHhh
Q 015342 32 TYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSN-PYMILFGVM-EIFLS 109 (408)
Q Consensus 32 sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~~v-~~pl~ 109 (408)
..-.-+++.+||+...+......+.......++....++.+..+.. +++ ...... .+.+..+++ .+-+.
T Consensus 74 G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~-----~~~~~~~~~~~~~~~~~~~~~i 144 (511)
T 4djk_A 74 GVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WPA-----LNEDPITKTIAALIILWALALT 144 (511)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CGG-----GTSCSSHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc-----cccCcHHHHHHHHHHHHHHHHH
Confidence 4556778899998888877777777666666666666655543310 110 000111 112221111 11122
Q ss_pred cCCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCc--cCccccccccccchhHHHHHHHHhhhHHhhccccch
Q 015342 110 QIPDFDQIWWLSIVAAVMSFT-YSAIGLALGIVQVAANGAFK--GSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVI 186 (408)
Q Consensus 110 ~~~~l~~L~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~ 186 (408)
..+..+....+..+..+..+. ...+.+...+.....+++.. .+.++. .+ .....+.+.++....|+|.|...
T Consensus 145 n~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~a~~G~e~ 219 (511)
T 4djk_A 145 QFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF----FP-DFSKVGTLVVFVAFILSYMGVEA 219 (511)
T ss_dssp HHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CC----CC-CTTSTTTTTTHHHHHHHHTTGGG
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccc----CC-CcccchHHHHHHHHHHHHhhHHH
Confidence 334555555554433222111 11111222222111111100 011110 01 11111223456677999999999
Q ss_pred hHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342 187 LIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDF 233 (408)
Q Consensus 187 ~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~ 233 (408)
....-+|+||| +|+.+|++..++.++.++|....+.-....+++
T Consensus 220 ~~~~a~E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 220 SATHVNEMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp GTGGGSSSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 99999999999 478999999999999999999988777666654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=96.95 E-value=0.06 Score=53.92 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=62.2
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHHhh
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLS 109 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~pl~ 109 (408)
..+|.++.|..||++|..+..+...+.++|-...-....|+.+..++... + +. .+.....++++++.+++.
T Consensus 87 Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~-~---g~-----~~~~v~~~i~~~l~~~~~ 157 (501)
T 2jln_A 87 GINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLL-T---GF-----TNLPLWIVIFGAIQVVTT 157 (501)
T ss_dssp CCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---CC-----CCHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---Cc-----chHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999888888999988876431 1 10 012234455556666666
Q ss_pred cCCCCCchhHHHHHHHH
Q 015342 110 QIPDFDQIWWLSIVAAV 126 (408)
Q Consensus 110 ~~~~l~~L~~~S~~~~~ 126 (408)
+ .-++.++++..++..
T Consensus 158 ~-~G~~~i~~~~~~~~p 173 (501)
T 2jln_A 158 F-YGITFIRWMNVFASP 173 (501)
T ss_dssp T-THHHHHHHHHHHHHH
T ss_pred H-hCHHHHHHHHHHHHH
Confidence 3 456777776655543
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=93.43 E-value=6.9 Score=39.08 Aligned_cols=82 Identities=9% Similarity=0.103 Sum_probs=42.8
Q ss_pred ccccHHHHHHHHccCCcceehHHHHHH-HHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHH
Q 015342 29 RNYTYMDAVRSILGGAKVKACGLIQYL-NLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIF 107 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~~~~~~~~~~~-~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~p 107 (408)
+..|..|.-++-||++.|.+..+...+ +.+..+.+-+...|..++.+. +.+...-+++.++++..
T Consensus 81 ~~~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------------Gi~~~~~i~i~~~i~~~ 146 (530)
T 3dh4_A 81 GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GIPLMYSILGLALFALV 146 (530)
T ss_dssp TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------TCCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHH
Confidence 368999999999999888776665443 233222333333344444332 12223334445555566
Q ss_pred hhcCCCCCchhHHHHHH
Q 015342 108 LSQIPDFDQIWWLSIVA 124 (408)
Q Consensus 108 l~~~~~l~~L~~~S~~~ 124 (408)
-+..-=++...++-.+=
T Consensus 147 Yt~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 147 YSIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp TTC------CCSHHHHH
T ss_pred HHHhcchHHHHHHHHHH
Confidence 66677778777776554
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=84.00 E-value=38 Score=34.15 Aligned_cols=82 Identities=9% Similarity=0.105 Sum_probs=44.3
Q ss_pred ccccHHHHHHHHccCCcceehHHHHHH-HHhhhHHHHHHhhhhhHHHHHhhccccCCCCCCCCccCCchhHHHHHHHHHH
Q 015342 29 RNYTYMDAVRSILGGAKVKACGLIQYL-NLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIF 107 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~~~~~~~~~~~-~~~g~~v~y~i~~~d~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~p 107 (408)
+..|..|.-++=||++.+.+..+...+ +.+.....-+...|..++.+.. .+...-+++.++++..
T Consensus 110 ~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~ 175 (593)
T 2xq2_A 110 GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALV 175 (593)
T ss_dssp TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHH
Confidence 368999999999998887666554432 2332223333334555555431 1222233444555556
Q ss_pred hhcCCCCCchhHHHHHH
Q 015342 108 LSQIPDFDQIWWLSIVA 124 (408)
Q Consensus 108 l~~~~~l~~L~~~S~~~ 124 (408)
-+..-=++...++-.+=
T Consensus 176 Yt~~GGl~av~~TD~iQ 192 (593)
T 2xq2_A 176 YSIYGGLSAVVWTDVIQ 192 (593)
T ss_dssp HHHTTC---CCHHHHHH
T ss_pred HHHhcchHHHHHHHHHH
Confidence 66666777777775544
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=28.18 E-value=55 Score=22.15 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=18.1
Q ss_pred hhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 015342 193 TLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYA 228 (408)
Q Consensus 193 ~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~ 228 (408)
--++| +++.|.++...+..- ..++|++||.
T Consensus 21 ~~~KP--d~~Ef~~iak~~~iG----~~i~G~iGf~ 50 (61)
T 3mp7_B 21 VTKKP--NWATYKRAAKITGLG----IILIGLIGML 50 (61)
T ss_dssp HSCCC--CTTHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34677 668888866654332 3355666665
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=28.14 E-value=3.7e+02 Score=25.03 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=43.4
Q ss_pred cccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Q 015342 30 NYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRS 78 (408)
Q Consensus 30 ~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~ 78 (408)
.....++.+..+|+++..++.+...+..++...+++......+..+.++
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999998888888777664
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=23.45 E-value=1.3e+02 Score=18.22 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 015342 374 MLSMACLVLSIIAGAGSIVGVVNDV 398 (408)
Q Consensus 374 ~~~~~g~~~~v~gt~~si~~ii~~~ 398 (408)
.++++|+..++.||+-.+.-.|...
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999999987776666544
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=22.60 E-value=70 Score=22.58 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=18.7
Q ss_pred hhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 015342 193 TLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAA 229 (408)
Q Consensus 193 ~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~ 229 (408)
--++| +++.|.++...+..- ..++|++||..
T Consensus 25 ~~~KP--dr~EF~~iak~~~iG----~~imG~IGfiI 55 (74)
T 1rh5_B 25 VLKKP--TKDEYLAVAKVTALG----ISLLGIIGYII 55 (74)
T ss_dssp SEECC--CHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34577 678888866654332 33567777653
No 11
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=22.18 E-value=81 Score=22.61 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=19.3
Q ss_pred hhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 015342 192 DTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYA 228 (408)
Q Consensus 192 ~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~ 228 (408)
.--++| +++.|.++...+.. -..++|+.||.
T Consensus 37 k~~~KP--dr~Ef~~iak~t~i----G~~imG~IGfi 67 (80)
T 2ww9_B 37 AKCKKP--DLKEYTKIVKAVGI----GFIAVGIIGYA 67 (80)
T ss_dssp HSCCCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 334678 66778886665432 23467777776
Done!