Query 015342
Match_columns 408
No_of_seqs 112 out of 1094
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 10:56:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015342.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015342hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 26.4 24 0.0017 21.9 2.7 30 194-229 15-44 (56)
2 d1sfea1 a.4.2.1 (A:93-176) Ada 12.4 36 0.0026 22.9 1.3 21 29-49 19-39 (84)
3 d1jb0l_ f.31.1.1 (L:) Photosys 6.1 4.8E+02 0.035 18.9 6.9 25 171-195 123-147 (151)
4 d1qnta1 a.4.2.1 (A:92-176) O6- 5.8 1.1E+02 0.0079 20.3 1.5 22 29-50 19-40 (85)
5 d1v54d_ f.23.1.1 (D:) Mitochon 4.9 4.3E+02 0.031 19.1 4.6 40 189-231 63-102 (144)
6 d1mgta1 a.4.2.1 (A:89-169) O6- 4.2 1.4E+02 0.01 19.6 1.1 13 29-41 20-32 (81)
7 d1n1jb_ a.22.1.3 (B:) Nuclear 3.7 2.9E+02 0.021 17.3 2.5 37 5-42 29-65 (78)
8 d1iwga8 f.35.1.1 (A:513-566,A: 3.2 4.8E+02 0.035 19.9 4.0 16 349-364 206-221 (222)
9 d1ciya3 f.1.3.1 (A:33-255) del 3.1 3.8E+02 0.028 20.7 3.2 26 317-342 7-32 (223)
10 d1y5ic1 f.21.3.1 (C:1-225) Res 2.8 9.1E+02 0.066 18.1 5.4 7 354-360 108-114 (225)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.42 E-value=24 Score=21.88 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=17.3
Q ss_pred hCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 015342 194 LKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAA 229 (408)
Q Consensus 194 m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~ 229 (408)
-++| +.+.|.++...+- +=..++|+.||..
T Consensus 15 ~~KP--~~~Ef~~ia~v~~----iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 15 LKKP--TKDEYLAVAKVTA----LGISLLGIIGYII 44 (56)
T ss_dssp EECC--CHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hcCC--CHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3567 6678887554432 2234566666653
No 2
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=12.37 E-value=36 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=15.4
Q ss_pred ccccHHHHHHHHccCCcceeh
Q 015342 29 RNYTYMDAVRSILGGAKVKAC 49 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~~~~~ 49 (408)
+..||+|+|+.+--+...+.+
T Consensus 19 ~v~TYg~iA~~~g~~~a~RaV 39 (84)
T d1sfea1 19 ETVSYQQLANAIGKPKAVRAV 39 (84)
T ss_dssp CCEEHHHHHHHTTCTTCHHHH
T ss_pred CeeeHHHHHHHhCCcccHHHH
Confidence 478999999988766654433
No 3
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=6.07 E-value=4.8e+02 Score=18.92 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHHhhhHHhhccccchhHhhhhhhC
Q 015342 171 FQALGDIAFAYSYSVILIEIQDTLK 195 (408)
Q Consensus 171 ~~a~~~~~faf~~~~~~~~i~~~m~ 195 (408)
+.+.|-..|||..-.+..-++.-|+
T Consensus 123 ~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 123 VGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hccccHHHHHHHHHcchHHHHHHHH
Confidence 3778889999987777666655553
No 4
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.80 E-value=1.1e+02 Score=20.33 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=16.0
Q ss_pred ccccHHHHHHHHccCCcceehH
Q 015342 29 RNYTYMDAVRSILGGAKVKACG 50 (408)
Q Consensus 29 ~~~sY~dl~~~~~G~~~~~~~~ 50 (408)
+..||+|+|+.+--++..+.+.
T Consensus 19 ~v~TYg~iA~~~g~p~aaRaVg 40 (85)
T d1qnta1 19 EVISYQQLAALAGNPKAARAVG 40 (85)
T ss_dssp CCEEHHHHHHHTTCTTCHHHHH
T ss_pred CcccHHHHHHHcCCcchHHHHH
Confidence 4689999999977666555443
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.92 E-value=4.3e+02 Score=19.15 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=21.9
Q ss_pred hhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 015342 189 EIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFG 231 (408)
Q Consensus 189 ~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG 231 (408)
+-..||+.|+ ..++.++..++..+.+-..++...-..+|+
T Consensus 63 ~t~ae~~~p~---gewK~v~g~~~~~i~~s~~i~~~~r~~v~p 102 (144)
T d1v54d_ 63 ESFAEMNRST---NEWKTVVGAAMFFIGFTALLLIWEKHYVYG 102 (144)
T ss_dssp SCHHHHTCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccccccCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4567888884 567776666554444433344333333343
No 6
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=4.21 E-value=1.4e+02 Score=19.55 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=10.6
Q ss_pred ccccHHHHHHHHc
Q 015342 29 RNYTYMDAVRSIL 41 (408)
Q Consensus 29 ~~~sY~dl~~~~~ 41 (408)
+..||+|+|+.+-
T Consensus 20 ~v~TYg~iA~~~g 32 (81)
T d1mgta1 20 SVITYGDLAKALN 32 (81)
T ss_dssp CCEEHHHHHHHTT
T ss_pred CeEeHHHHHHHcC
Confidence 4789999998764
No 7
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.69 E-value=2.9e+02 Score=17.29 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHcc
Q 015342 5 SFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILG 42 (408)
Q Consensus 5 ~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G 42 (408)
-+...+..++.-++.+.. ...+.+..+|+|+.+.+=.
T Consensus 29 ~a~E~Fi~~l~~~A~~~a-~~~~rkti~~~dl~~av~~ 65 (78)
T d1n1jb_ 29 KAAQIFITELTLRAWIHT-EDNKRRTLQRNDIAMAITK 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCCcCCHHHHHHHHhc
Confidence 344555566665554321 2234456899999987653
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.20 E-value=4.8e+02 Score=19.88 Aligned_cols=16 Identities=13% Similarity=0.588 Sum_probs=11.2
Q ss_pred hhhhHHHHHHhhccCc
Q 015342 349 VYFPVEMYIAQKKITK 364 (408)
Q Consensus 349 fi~P~l~~lk~~~~~~ 364 (408)
++.|+++.+..+|.+|
T Consensus 206 ~~~Pal~~l~~r~~~r 221 (222)
T d1iwga8 206 FFVPVFFVVVRRRFSR 221 (222)
T ss_dssp SSSSSSHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhhcC
Confidence 6789998876665443
No 9
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=3.14 E-value=3.8e+02 Score=20.72 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHccchHHHHHHhhhh
Q 015342 317 CFVILTTVISMLLPFFNDVVGILGAL 342 (408)
Q Consensus 317 ~~v~~~~~lA~~vP~~~~v~~l~Ga~ 342 (408)
.+-++..+++.++|..+.+++++|-+
T Consensus 7 ~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 7 SLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 33367778888899999888776544
No 10
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=2.81 E-value=9.1e+02 Score=18.10 Aligned_cols=7 Identities=0% Similarity=-0.472 Sum_probs=3.1
Q ss_pred HHHHHhh
Q 015342 354 EMYIAQK 360 (408)
Q Consensus 354 l~~lk~~ 360 (408)
+++-+..
T Consensus 108 ll~RR~~ 114 (225)
T d1y5ic1 108 LLKRRLF 114 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3444444
Done!