BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015343
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 158/380 (41%), Gaps = 59/380 (15%)
Query: 40 DVQDVAKVAEEGLRTIAKLSKGPWLEDGEQLKPYEIEESRGYVTFSLTNGPEYHVSQIAD 99
+V+++ + A+ G + + W P +E+ GY+ G S I +
Sbjct: 58 NVEELWESAKSGGWRPSSAPRSDW--------PPPTKETNGYLRVRCNGGLNQQRSAICN 109
Query: 100 AVVVARVLRATLVVPDI-RGSKPGDERKFEDVYDVNKFIRSLDGVVKVVKELPEEISFRN 158
AV+ AR++ ATLV+P++ S D+ F+ +YDV FI +L VK+V ++P+ +N
Sbjct: 110 AVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD--VHKN 167
Query: 159 LAVVKVPN---RVTEDHIIENIQPIFKAKGNIRLATYFPSVNMRKSTEKSNADL--VACL 213
K+ R D IE A Y + R + E N + + C
Sbjct: 168 GKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCR 227
Query: 214 AMFGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLR--VDLLDNKGCHE------- 264
+ L +P + ++ +S+V++LR S G F+++ LR +D+L GC +
Sbjct: 228 VNYHALRFKPHIMKLSESIVDKLR-----SQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQ 282
Query: 265 -----------------GNGRKS---C-YGAHEIAVFLRKIGYDKDTTIYLTQSRW---D 300
N R++ C E+ + LR + +D T IYL +
Sbjct: 283 KILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGE 342
Query: 301 SSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGL-- 358
+ + +FP+ +N D E+ ++ +D+ +C SD F+P G
Sbjct: 343 QFMKPFRTLFPRL---DNHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSN 399
Query: 359 FYANVAGKRIASGKNQILIP 378
F N+ G R+ G + P
Sbjct: 400 FANNLLGHRLYYGFRTTIRP 419
>sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb
PE=2 SV=2
Length = 589
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 310 FPKTYTKENIMPADKKEKFL--DSADSEFEKVIDFYLCSQSD 349
PKTYT N P +K + L D A + F + + F LCSQ D
Sbjct: 381 LPKTYTIANQFPLNKLTELLRLDMAAAGFTEALTFALCSQED 422
>sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB
PE=2 SV=1
Length = 589
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 310 FPKTYTKENIMPADKKEKFL--DSADSEFEKVIDFYLCSQSD 349
PKTYT N P +K + L D A + F + + F LCSQ D
Sbjct: 381 LPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQED 422
>sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB
PE=1 SV=3
Length = 589
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 310 FPKTYTKENIMPADKKEKFL--DSADSEFEKVIDFYLCSQSD 349
PKTYT N P +K + L D A + F + + F LCSQ D
Sbjct: 381 LPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQED 422
>sp|Q9QSK4|VF022_IIV6 Putative helicase 022L OS=Invertebrate iridescent virus 6 GN=NTP1
PE=3 SV=1
Length = 1171
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 51/242 (21%)
Query: 188 RLATYFPSVNMRKSTEKSNADLVACLAMFGTLELQPDVNEVVDSMVERLRT--LSRKSDG 245
R +T + S N R K++ L + F T E + V+++R+ + +K D
Sbjct: 156 RCSTNYSSGN-RNEISKTSKKLFSKFYSFYTFE-------IFAKTVKKMRSSEIVKKFDN 207
Query: 246 RFIAVD----LR--------------------VDLLDNKGCHEGNGRKSCYGAHEIAVFL 281
+ I +D LR + LL NK G G EIA +
Sbjct: 208 KIIVIDEAHNLRLSDVKVNDEKIDVYGEVHRFIHLLTNKKVLLLTGTPMKDGPQEIASLM 267
Query: 282 RKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVID 341
I + LTQ + ++ + LK+ FP T + +E+FL S E + +
Sbjct: 268 NLI-------LPLTQ-QMPTNKNFLKEYFPSTEAPQETYELGDEEEFLKSGGEEMKNIKK 319
Query: 342 F----YLCSQSDAFVPAISGLFYANVAGKRIASGKNQILIPADISGSSASATDFISPYVL 397
F Y C +F+ A+ + G+R+ S K+ ++P +S + A ++S Y+
Sbjct: 320 FKAQVYGCV---SFLKAMDSKVLKVMVGERMGSLKHYKVVPEYMSTFQSKA--YVSAYLQ 374
Query: 398 KK 399
K
Sbjct: 375 DK 376
>sp|P50412|VEGFA_SHEEP Vascular endothelial growth factor A OS=Ovis aries GN=VEGFA PE=2
SV=1
Length = 146
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 GSKPGDERKFEDVYDVNKFIRSLDGVVKVVKELPEEISF 156
G KP + KF DVY F R ++ +V + +E P+EI F
Sbjct: 33 GQKPHEVMKFMDVYQ-RSFCRPIETLVDIFQEYPDEIEF 70
>sp|P15691|VEGFA_BOVIN Vascular endothelial growth factor A OS=Bos taurus GN=VEGFA PE=1
SV=1
Length = 190
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 118 GSKPGDERKFEDVYDVNKFIRSLDGVVKVVKELPEEISF 156
G KP + KF DVY F R ++ +V + +E P+EI F
Sbjct: 33 GQKPHEVVKFMDVYQ-RSFCRPIETLVDIFQEYPDEIEF 70
>sp|Q2LZB1|UBP36_DROPS Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila
pseudoobscura pseudoobscura GN=Usp36 PE=3 SV=2
Length = 1059
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 365 GKRIASGKNQILIPADISGSSASATDFISPYV 396
G R+ +G +Q+ +PA +S SS + T FI P +
Sbjct: 490 GLRLTNGHSQVAVPATVSSSSPTHTRFIGPQL 521
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,738,368
Number of Sequences: 539616
Number of extensions: 6289420
Number of successful extensions: 16986
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 16975
Number of HSP's gapped (non-prelim): 22
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)