Query 015343
Match_columns 408
No_of_seqs 167 out of 396
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 8.5E-48 1.9E-52 380.9 4.3 271 86-374 6-346 (351)
2 KOG3849 GDP-fucose protein O-f 98.2 2.1E-05 4.6E-10 77.6 12.7 255 77-372 27-369 (386)
3 PF05830 NodZ: Nodulation prot 97.7 0.0011 2.3E-08 66.7 15.0 255 79-362 2-290 (321)
4 PF01531 Glyco_transf_11: Glyc 89.3 11 0.00024 37.5 14.2 38 78-115 29-66 (298)
5 KOG3705 Glycoprotein 6-alpha-L 79.5 6.7 0.00015 41.5 7.6 128 218-358 340-475 (580)
6 PF03254 XG_FTase: Xyloglucan 68.9 54 0.0012 35.5 11.3 277 78-376 110-442 (476)
7 PF02845 CUE: CUE domain; Int 54.1 9.5 0.00021 27.0 1.8 38 302-346 4-41 (42)
8 PF14771 DUF4476: Domain of un 50.8 11 0.00024 31.1 2.0 35 271-317 39-73 (95)
9 PF10892 DUF2688: Protein of u 43.9 17 0.00037 28.3 1.9 16 269-284 42-57 (60)
10 PRK09240 thiH thiamine biosynt 34.1 2.9E+02 0.0062 28.6 9.7 97 225-330 56-171 (371)
11 TIGR02351 thiH thiazole biosyn 33.8 2.6E+02 0.0057 28.7 9.3 59 272-330 103-170 (366)
12 PLN02757 sirohydrochlorine fer 31.5 49 0.0011 30.2 3.2 77 184-272 72-153 (154)
13 smart00546 CUE Domain that may 28.8 49 0.0011 23.3 2.2 37 301-344 4-40 (43)
14 PF03801 Ndc80_HEC: HEC/Ndc80p 27.8 26 0.00057 32.0 0.8 43 275-345 95-137 (157)
15 smart00874 B5 tRNA synthetase 24.3 63 0.0014 24.8 2.2 20 269-288 16-35 (71)
16 PRK05578 cytidine deaminase; V 22.9 88 0.0019 27.9 3.2 40 280-320 92-131 (131)
17 TIGR01354 cyt_deam_tetra cytid 22.9 97 0.0021 27.2 3.4 40 279-319 88-127 (127)
18 cd03789 GT1_LPS_heptosyltransf 22.5 2.8E+02 0.006 26.6 6.8 20 346-365 197-216 (279)
19 COG4878 Uncharacterized protei 20.3 88 0.0019 31.8 2.9 55 275-329 91-148 (309)
20 PRK10556 hypothetical protein; 20.3 65 0.0014 27.9 1.7 20 272-291 3-22 (111)
21 TIGR03551 F420_cofH 7,8-dideme 20.2 4.9E+02 0.011 26.3 8.4 74 271-351 69-163 (343)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=8.5e-48 Score=380.89 Aligned_cols=271 Identities=24% Similarity=0.370 Sum_probs=187.1
Q ss_pred ecCCchhhHHHHHhHHHHHHHhcceEEeeccCC-CCCCCCCC-----CCCcCChHHHHHhccCccEEeccCchhhhcccc
Q 015343 86 LTNGPEYHVSQIADAVVVARVLRATLVVPDIRG-SKPGDERK-----FEDVYDVNKFIRSLDGVVKVVKELPEEISFRNL 159 (408)
Q Consensus 86 ~~gGlnq~R~~IcdaV~vArlLnATLVlP~l~~-S~w~d~s~-----F~dIfD~dhFI~sL~~dV~Ivk~LP~~~~~~~~ 159 (408)
+.||+||||.++++||++|++||+|||||.+.. +.|++.++ |+++||+++|++.++++|.+.+.+|..+.....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 789999999999999999999999999999996 78999887 999999999999999999999988876554211
Q ss_pred -------------------------------ceeeCCC-CCChhHHHhhchhhhhhc------ceEEEeecCCccccccC
Q 015343 160 -------------------------------AVVKVPN-RVTEDHIIENIQPIFKAK------GNIRLATYFPSVNMRKS 201 (408)
Q Consensus 160 -------------------------------~~~~~p~-~~s~~yy~~~ilP~l~~~------~vi~l~~f~~~~~~~~~ 201 (408)
....... +..+.+|.++++|.+.++ +++.|.++...+. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~ 163 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLP--DN 163 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS----
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccch--hc
Confidence 0011111 456677778899999886 9999987644322 34
Q ss_pred CCcchhhhHhhhhhcCceeechhHHHHHHHHHHHHHhcccCCCCceEEEEeeeehhhccCCCCC----------------
Q 015343 202 TEKSNADLVACLAMFGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVDLLDNKGCHEG---------------- 265 (408)
Q Consensus 202 ~~p~~~q~lRCr~~f~ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~Emla~s~C~~~---------------- 265 (408)
..+.++|+ +|+|+++|+++|++++++++. .+|+|||+|||+|...++.|.++
T Consensus 164 ~~~~~~~r--------~l~~~~~i~~~a~~~i~~~~~----~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~~~ 231 (351)
T PF10250_consen 164 YLDRDLQR--------YLRFSPEIRELADKFIKRLLA----GGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGKKS 231 (351)
T ss_dssp GGGGGGGG--------G--B-HHHHHHHHHHHHHH--------SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-GGG
T ss_pred ccCccceE--------EEecCHHHHHHHHHHHHHhhc----ccCceEEEeecccCchHhhcccCCchHHHHHhHhhcccc
Confidence 45667776 999999999999999999992 35899999999983227888862
Q ss_pred ------CCCccc-cCHHHHHHHHHHhCCCCCceEEEecccc---cccchHHHHhCCCccccccCCChhhHhhhhcccccc
Q 015343 266 ------NGRKSC-YGAHEIAVFLRKIGYDKDTTIYLTQSRW---DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSE 335 (408)
Q Consensus 266 ------~~~g~C-LtP~Evgl~LralGf~~~T~IYlA~g~~---~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~ 335 (408)
...+.| ++|++++.+++++|+.+.|.||||++++ .+.|++|++.||++++|+++.+.+|+++|.+ +
T Consensus 232 ~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~----~ 307 (351)
T PF10250_consen 232 INPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND----D 307 (351)
T ss_dssp TT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S---------S
T ss_pred ccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc----c
Confidence 113567 9999999999999999999999999995 5689999999999999999999999999984 4
Q ss_pred hhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCCCc
Q 015343 336 FEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGKNQ 374 (408)
Q Consensus 336 ~~AAlDy~Vcl~SDvFv~t~~Gnf~~~V~GhR~~~G~~k 374 (408)
++|+||++||++||+||||..++|+.+|+++|++.|+++
T Consensus 308 ~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~~ 346 (351)
T PF10250_consen 308 QLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKPK 346 (351)
T ss_dssp --HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS-
T ss_pred chhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCCC
Confidence 579999999999999999999999999999999999773
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.1e-05 Score=77.57 Aligned_cols=255 Identities=16% Similarity=0.232 Sum_probs=145.6
Q ss_pred CCCcEEEEE-ecCCchhhHHHHHhHHHHHHHhcceEEeeccCC----CCCCCCCCCCCcCChHHHHHhccCccEEecc--
Q 015343 77 ESRGYVTFS-LTNGPEYHVSQIADAVVVARVLRATLVVPDIRG----SKPGDERKFEDVYDVNKFIRSLDGVVKVVKE-- 149 (408)
Q Consensus 77 ~snGyl~v~-~~gGlnq~R~~IcdaV~vArlLnATLVlP~l~~----S~w~d~s~F~dIfD~dhFI~sL~~dV~Ivk~-- 149 (408)
..||||+.- |-|-+.||-....-..|.|+.||.|||+|..-. .+.+---.|+..|.++-. +..-||+..
T Consensus 27 DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl----~~YhRVitm~d 102 (386)
T KOG3849|consen 27 DPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPL----AKYHRVITMQD 102 (386)
T ss_pred CCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccH----hhhhhheeHHH
Confidence 479999876 889999999999999999999999999997642 123333458888877533 223333321
Q ss_pred ----C-chhhh-------------------------ccccceeeCCCCCC-------hhHH----------------Hhh
Q 015343 150 ----L-PEEIS-------------------------FRNLAVVKVPNRVT-------EDHI----------------IEN 176 (408)
Q Consensus 150 ----L-P~~~~-------------------------~~~~~~~~~p~~~s-------~~yy----------------~~~ 176 (408)
| |.... +.+|+ =|-|-+ .+|| .+.
T Consensus 103 Fm~klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPF---GPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~k 179 (386)
T KOG3849|consen 103 FMKKLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPF---GPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEK 179 (386)
T ss_pred HHHHhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCC---CCchhheEeeeeccccccccccchhhcchHHHHHhh
Confidence 1 11000 00110 000100 1121 111
Q ss_pred chhhhhhcceEEEeecCCccccccCCCcchhhhHhhhhhcCceeechhHHHHHHHHHHHHHhcccCCCCceEEEEeeee-
Q 015343 177 IQPIFKAKGNIRLATYFPSVNMRKSTEKSNADLVACLAMFGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVD- 255 (408)
Q Consensus 177 ilP~l~~~~vi~l~~f~~~~~~~~~~~p~~~q~lRCr~~f~ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~E- 255 (408)
..| ++|-|+.++.- | ......+..-.+|| -||.+.+|.+-|++.+..-- ..||+++|||.+
T Consensus 180 fp~--eeyPVLAf~gA-P-A~FPv~~e~~~lQk--------Yl~WS~r~~e~~k~fI~a~L------~rpfvgiHLRng~ 241 (386)
T KOG3849|consen 180 FPS--EEYPVLAFSGA-P-APFPVKGEVWSLQK--------YLRWSSRITEQAKKFISANL------ARPFVGIHLRNGA 241 (386)
T ss_pred CCc--ccCceeeecCC-C-CCCccccccccHHH--------HHHHHHHHHHHHHHHHHHhc------CcceeEEEeecCc
Confidence 111 46777777521 1 11111111223665 47889999999988775422 249999999985
Q ss_pred hhhccCCCC-----------------CC-C-----Cccc-cCHHHHHH-HHHHhCCC-CCceEEEecccccccchHHH-H
Q 015343 256 LLDNKGCHE-----------------GN-G-----RKSC-YGAHEIAV-FLRKIGYD-KDTTIYLTQSRWDSSLSVLK-D 308 (408)
Q Consensus 256 mla~s~C~~-----------------~~-~-----~g~C-LtP~Evgl-~LralGf~-~~T~IYlA~g~~~~~l~~Lk-~ 308 (408)
-|. ..|.+ .. . ...| =+.+||-. +-+..|-- .-..+|+|+..- ..+..|. +
T Consensus 242 DWv-raCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~-hmi~Eln~a 319 (386)
T KOG3849|consen 242 DWV-RACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSD-HMIDELNEA 319 (386)
T ss_pred hHH-HHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccch-hhhHHHHHh
Confidence 122 22443 11 1 2467 56666532 33333332 334699998652 2223332 2
Q ss_pred hCCCccccccCCChhhHhhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCC
Q 015343 309 IFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGK 372 (408)
Q Consensus 309 ~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl~SDvFv~t~~Gnf~~~V~GhR~~~G~ 372 (408)
++|-=+.-..|-+ . -+-+|..|.-+||-||++--++|+..|--.|-..|+
T Consensus 320 L~~~~i~vh~l~p-------------d-d~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~Gr 369 (386)
T KOG3849|consen 320 LKPYEIEVHRLEP-------------D-DMYTDLAILGQADHFIGNCVSSFSAFVKRERDHAGR 369 (386)
T ss_pred hcccceeEEecCc-------------c-cchhhhhhhcccchhhhhhHHHHHHHHhhhhcccCC
Confidence 3332111111111 1 256788899999999999999999999999999884
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=97.71 E-value=0.0011 Score=66.71 Aligned_cols=255 Identities=19% Similarity=0.267 Sum_probs=126.3
Q ss_pred CcEEEEEecCCchhhHHHHHhHHHHHHHhcceEEeeccCCCCCCCCCCCCCcCChHHHHHhcc--CccEEeccCchhhhc
Q 015343 79 RGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPDIRGSKPGDERKFEDVYDVNKFIRSLD--GVVKVVKELPEEISF 156 (408)
Q Consensus 79 nGyl~v~~~gGlnq~R~~IcdaV~vArlLnATLVlP~l~~S~w~d~s~F~dIfD~dhFI~sL~--~dV~Ivk~LP~~~~~ 156 (408)
+.|++.+--+|++.--=+++-|-.+|+-.|.||||- -+.|-+-| ..|...|++ |-+-.+ ..|+|.-+ +.+..
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-w~~s~~~~-~~f~n~f~~--ffepv~~i~~~~~~~~--d~i~~ 75 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-WRGSCYLD-QPFTNAFPV--FFEPVEDIAGVRVICD--DRINQ 75 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--BT-TT-S-STTSBSHHH--HB---SEETTEEEE-S--GGGGT
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-cCCceecC-CcccccCCc--ccchhhhhcCceeEec--chhhh
Confidence 578999999999999999999999999999999984 12232222 235555443 444333 34454422 11111
Q ss_pred cccceeeCCCCCC-h---------hHH---Hhhchhhhh------hcceEEEeecCCccccccCCCcchhhhHhhhhhcC
Q 015343 157 RNLAVVKVPNRVT-E---------DHI---IENIQPIFK------AKGNIRLATYFPSVNMRKSTEKSNADLVACLAMFG 217 (408)
Q Consensus 157 ~~~~~~~~p~~~s-~---------~yy---~~~ilP~l~------~~~vi~l~~f~~~~~~~~~~~p~~~q~lRCr~~f~ 217 (408)
.....--.|.||. | .++ .+++.-+++ ...||+.+=+.|+- ..++ .| -.|.
T Consensus 76 ~~~~g~~fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~c-------~~~a--eR--~if~ 144 (321)
T PF05830_consen 76 FSFPGPFFPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWRC-------DEEA--ER--EIFS 144 (321)
T ss_dssp ----SSEESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTSS--------HHH--HH--HHHH
T ss_pred hcCCCCcChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCcc-------hhHH--HH--HHHH
Confidence 0000111345553 1 111 123333444 34577766544442 2233 33 4689
Q ss_pred ceeechhHHHHHHHHHHHHHhcccCCCCceEEEEeeeehhhccCCCCCCCCccc-cCHHHHHH--------HHHHhCCCC
Q 015343 218 TLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVDLLDNKGCHEGNGRKSC-YGAHEIAV--------FLRKIGYDK 288 (408)
Q Consensus 218 ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~Emla~s~C~~~~~~g~C-LtP~Evgl--------~LralGf~~ 288 (408)
.|+-+++|++..+.+.++-=. +.+-|++|.|. .+|....+ -.| .+-+|..+ -+++.-.++
T Consensus 145 slkpR~eIqarID~iy~ehf~-----g~~~IGVHVRh-----GngeD~~~-h~~~~~D~e~~L~~V~~ai~~ak~~~~~k 213 (321)
T PF05830_consen 145 SLKPRPEIQARIDAIYREHFA-----GYSVIGVHVRH-----GNGEDIMD-HAPYWADEERALRQVCTAIDKAKALAPPK 213 (321)
T ss_dssp HS-B-HHHHHHHHHHHHHHTT-----TSEEEEEEE---------------------HHHHHHHHHHHHHHHHHHTS--SS
T ss_pred hCCCCHHHHHHHHHHHHHHcC-----CCceEEEEEec-----cCCcchhc-cCccccCchHHHHHHHHHHHHHHhccCCC
Confidence 999999999999987765432 45689999995 11100000 123 33344322 245566777
Q ss_pred CceEEEecccccccchHHHHhCCCccccccCCChhhHhhhhccc---ccchhhhhhhhhhhCCCeee-ecCCCchhHH
Q 015343 289 DTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSA---DSEFEKVIDFYLCSQSDAFV-PAISGLFYAN 362 (408)
Q Consensus 289 ~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~---~s~~~AAlDy~Vcl~SDvFv-~t~~Gnf~~~ 362 (408)
++.|+||+..- +.++.+++.||.+++-++=.++..-.++.+.. .+...|-+|-+..+++|+-| .+-.+.|...
T Consensus 214 ~~~IFLATDSa-eVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~ 290 (321)
T PF05830_consen 214 PVRIFLATDSA-EVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRY 290 (321)
T ss_dssp -EEEEEEES-H-HHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHH
T ss_pred CeeEEEecCcH-HHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhH
Confidence 89999998763 34678999999988764433322111222100 13347999999999999999 6777777643
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=89.25 E-value=11 Score=37.46 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=32.7
Q ss_pred CCcEEEEEecCCchhhHHHHHhHHHHHHHhcceEEeec
Q 015343 78 SRGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPD 115 (408)
Q Consensus 78 snGyl~v~~~gGlnq~R~~IcdaV~vArlLnATLVlP~ 115 (408)
..+-..|.++|||.+|--+.+-.-++|++.+-+.++|.
T Consensus 29 ~~~~~~i~~~g~LGNqmfqya~l~~lak~~~~~~~i~~ 66 (298)
T PF01531_consen 29 KYLMSTINLNGRLGNQMFQYASLYGLAKLNGRTAFIPI 66 (298)
T ss_pred ccceEEEEEcchHHHHHhHHHHHHHHHHhcCCccccch
Confidence 57889999999999999999999999998887766654
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.54 E-value=6.7 Score=41.49 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=76.0
Q ss_pred ceeechhHHHHHHHHHHHHHhcccCCCCceEEEEeee-ehhhcc-CCCCCCCCccccCH-HHHHHHHHHhCCCCCceEEE
Q 015343 218 TLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-DLLDNK-GCHEGNGRKSCYGA-HEIAVFLRKIGYDKDTTIYL 294 (408)
Q Consensus 218 ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-Emla~s-~C~~~~~~g~CLtP-~Evgl~LralGf~~~T~IYl 294 (408)
-+|++|-.++.-+ +.|+..+- ..|-|++|.|. |-+.-. .|... ..-++= |+-=.+|..=|=+-.-+|||
T Consensus 340 L~Rpqp~t~~~l~---~a~k~lg~--~~PivGvhvRRTDKVGTEAAfH~~---eEYM~~vE~~f~~le~rg~~~~rRifl 411 (580)
T KOG3705|consen 340 LMRPQPATQEKLD---KALKSLGL--DKPIVGVHVRRTDKVGTEAAFHAL---EEYMEWVEIWFKVLEKRGKPLERRIFL 411 (580)
T ss_pred HhCCChhhHHHHH---HHHHhCCC--CCceeeEEEEecccccchhhhhhH---HHHHHHHHHHHHHHHHhCCchhheEEE
Confidence 4788888877544 44554432 45999999987 532200 01100 000111 22234677778888889999
Q ss_pred ecccccccchHHHHhCCCccccccCCChhhHhhhhcc----cccch-hhhhhhhhhhCCCeeeecCCCc
Q 015343 295 TQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDS----ADSEF-EKVIDFYLCSQSDAFVPAISGL 358 (408)
Q Consensus 295 A~g~~~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~----~~s~~-~AAlDy~Vcl~SDvFv~t~~Gn 358 (408)
|+.+-. .+...|..|||. .+.+..|.+..... +..++ --.+|..+.+.+|..|.|.++-
T Consensus 412 AsDDp~-vv~EAk~kYPnY----e~igd~eia~~A~l~nRYTd~sL~GvIlDIh~LS~~d~LVCTFSSQ 475 (580)
T KOG3705|consen 412 ASDDPT-VVPEAKNKYPNY----EVIGDTEIAKTAQLNNRYTDASLMGVILDIHILSKVDYLVCTFSSQ 475 (580)
T ss_pred ecCCch-hchHhhccCCCc----EEeccHHHHHHhhccccchhhhhhheeeeeeeecccceEEEechHH
Confidence 998852 245568899995 33444444444321 11122 2357999999999999988765
No 6
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=68.87 E-value=54 Score=35.48 Aligned_cols=277 Identities=17% Similarity=0.171 Sum_probs=138.2
Q ss_pred CCcEEEEEecCCchhhHHHHHhHHHHHHHhcceEEeec---c--------CCCCCCCCCCCCCc-----CC---hHHHHH
Q 015343 78 SRGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPD---I--------RGSKPGDERKFEDV-----YD---VNKFIR 138 (408)
Q Consensus 78 snGyl~v~~~gGlnq~R~~IcdaV~vArlLnATLVlP~---l--------~~S~w~d~s~F~dI-----fD---~dhFI~ 138 (408)
.-.||.-....||.|.-.+|+-|..+|-|-|..|+|.. + -.|.|--|.+|--- |+ .+-+-+
T Consensus 110 ~CkYvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dFP~~~~~~~~~~~~~~sygn 189 (476)
T PF03254_consen 110 ECKYVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDFPLKNQLNGFSQESAESYGN 189 (476)
T ss_pred CCcEEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCCCchhhccCCCCCchHHHHH
Confidence 45799999999999999999999999999999988844 1 12447666654221 11 222344
Q ss_pred hccCccEEec--cCchhhhccccceeeCCCC---CChhHHHhhchhhhhhcceEEEee---cCCccccccCCCc---chh
Q 015343 139 SLDGVVKVVK--ELPEEISFRNLAVVKVPNR---VTEDHIIENIQPIFKAKGNIRLAT---YFPSVNMRKSTEK---SNA 207 (408)
Q Consensus 139 sL~~dV~Ivk--~LP~~~~~~~~~~~~~p~~---~s~~yy~~~ilP~l~~~~vi~l~~---f~~~~~~~~~~~p---~~~ 207 (408)
-|++.+.... .+|+-+ .+.+... -..-|+-++-...|++-.-+.+.. |.|++=+ .| .++
T Consensus 190 ml~~~~~~~~~~~~p~~v------yl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl----~P~f~~eL 259 (476)
T PF03254_consen 190 MLKNKSINNSDNSLPPYV------YLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFL----VPSFRPEL 259 (476)
T ss_pred HHhcCCccccccCCCcee------EEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhh----chHHHHHH
Confidence 4455444433 334321 1112211 112234333333333333333320 1111100 12 122
Q ss_pred hhHhh-h-hhcC-ceee----chhHHHHHHHHHHHHHhcccCCCCceEEEEeee-e---------hhhccCCCCCCCCcc
Q 015343 208 DLVAC-L-AMFG-TLEL----QPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-D---------LLDNKGCHEGNGRKS 270 (408)
Q Consensus 208 q~lRC-r-~~f~-ALrF----~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-E---------mla~s~C~~~~~~g~ 270 (408)
.+|-= + +.|| -.|+ +.++-. +|.|.-+.--...+.=|++-.|. + |-+--.|... ++.
T Consensus 260 ~~lFP~k~tvFhhL~RYLfhPsN~VW~----~Itryy~ayLa~Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~--e~L 333 (476)
T PF03254_consen 260 DRLFPEKDTVFHHLGRYLFHPSNQVWG----LITRYYDAYLAKADERIGIQIRVFDPKPGPFQHVLDQILSCTQQ--EKL 333 (476)
T ss_pred HHhcCChhHHHHHHHHHHcCCCchhHH----HHHHHHHHHccCcCceeEEEEEecCCCCCcchhHHHHHHHHHhh--ccc
Confidence 22100 0 0111 1111 222222 33333221111223458888887 1 1111125421 121
Q ss_pred c--c-CHHHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCccc--cccC----CChhhHhhhhcccccchhhhhh
Q 015343 271 C--Y-GAHEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYT--KENI----MPADKKEKFLDSADSEFEKVID 341 (408)
Q Consensus 271 C--L-tP~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~t--Ke~L----~~~eeL~~f~~~~~s~~~AAlD 341 (408)
. . +..|. .--.+.+=.+.+.|+||+=..+ .=+.||++|-.--| -|.+ .+.||.+.+.+.... +.|-.|
T Consensus 334 LP~v~~~~~~-~~~~~~~~~~~kaVlVtSL~~~-yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~-~kAlaE 410 (476)
T PF03254_consen 334 LPEVVDTQEP-AASSSSKSQKSKAVLVTSLYSE-YYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHN-QKALAE 410 (476)
T ss_pred CCCccccccc-cccccCCCCceEEEEEEeCCHH-HHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchH-HHHHHH
Confidence 1 2 11221 1112334456667888875531 22457777765333 2222 346777777654334 479999
Q ss_pred hhhhhCCCeeeecCCCchhHHHHHHHhhcCCCcee
Q 015343 342 FYLCSQSDAFVPAISGLFYANVAGKRIASGKNQIL 376 (408)
Q Consensus 342 y~Vcl~SDvFv~t~~Gnf~~~V~GhR~~~G~~kti 376 (408)
-+..+-||+.|.|.-++|...-+|= .|.+..|
T Consensus 411 myLLS~sD~LVTS~~STFGYVAqgL---gGl~Pwi 442 (476)
T PF03254_consen 411 MYLLSLSDVLVTSGWSTFGYVAQGL---GGLRPWI 442 (476)
T ss_pred HHHHHhccceEecCCCCchhHHHhh---cCCCceE
Confidence 9999999999999999998766553 3555444
No 7
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=54.08 E-value=9.5 Score=27.01 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=25.2
Q ss_pred cchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhhh
Q 015343 302 SLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCS 346 (408)
Q Consensus 302 ~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl 346 (408)
.+..|+++||++ +.+.+..-+....+.+.+|+|.+...
T Consensus 4 ~v~~L~~mFP~~-------~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 4 MVQQLQEMFPDL-------DREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHSSSS--------HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 357899999995 33444444422346788999988753
No 8
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=50.79 E-value=11 Score=31.13 Aligned_cols=35 Identities=20% Similarity=0.525 Sum_probs=32.7
Q ss_pred ccCHHHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCccccc
Q 015343 271 CYGAHEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKE 317 (408)
Q Consensus 271 CLtP~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe 317 (408)
|+|..+++-+|+...|+ ..+|..|+-++|++++++
T Consensus 39 ~~T~~Qv~~il~~f~fd------------~~kl~~lk~l~p~i~D~~ 73 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD------------NDKLKALKLLYPYIVDPQ 73 (95)
T ss_pred ceeHHHHHHHHHHcCCC------------HHHHHHHHHHhhhccCHH
Confidence 89999999999999999 567999999999999986
No 9
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=43.89 E-value=17 Score=28.28 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.8
Q ss_pred ccccCHHHHHHHHHHh
Q 015343 269 KSCYGAHEIAVFLRKI 284 (408)
Q Consensus 269 g~CLtP~Evgl~Lral 284 (408)
|-|+||||-+.+++++
T Consensus 42 ~~CitpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDCITPEEDREILEAT 57 (60)
T ss_pred hccCCHHHHHHHHHHH
Confidence 5689999999998875
No 10
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=34.08 E-value=2.9e+02 Score=28.56 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCceEEEEeeeehhhccCCCCC-------C--CCccc-cCHHHHHHHHHHhCCCCCceEEE
Q 015343 225 VNEVVDSMVERLRTLSRKSDGRFIAVDLRVDLLDNKGCHEG-------N--GRKSC-YGAHEIAVFLRKIGYDKDTTIYL 294 (408)
Q Consensus 225 I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~Emla~s~C~~~-------~--~~g~C-LtP~Evgl~LralGf~~~T~IYl 294 (408)
|-+.|+++.++.- |.-|-++.+... . ..|... . +...- |+++|+....+++.=..-+.|.+
T Consensus 56 L~~~A~~ir~~~~-------G~~v~l~~~in~-T-n~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~l 126 (371)
T PRK09240 56 MAQKAQRLTRQRF-------GNTISLYTPLYL-S-NYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILL 126 (371)
T ss_pred HHHHHHHHHHHHc-------CCEEEEEeceEE-c-ccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4445555555443 555666666542 1 134431 1 11224 99999865444332222568888
Q ss_pred ecccc---------cccchHHHHhCCCccccccCCChhhHhhhhc
Q 015343 295 TQSRW---------DSSLSVLKDIFPKTYTKENIMPADKKEKFLD 330 (408)
Q Consensus 295 A~g~~---------~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~ 330 (408)
.+|+- .+.+..+++.||.+--+-..++.+++..+++
T Consensus 127 vgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~ 171 (371)
T PRK09240 127 LTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVE 171 (371)
T ss_pred eeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHH
Confidence 88873 1234567778887644444567788777763
No 11
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=33.75 E-value=2.6e+02 Score=28.72 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHHhCCCCCceEEEecccc---------cccchHHHHhCCCccccccCCChhhHhhhhc
Q 015343 272 YGAHEIAVFLRKIGYDKDTTIYLTQSRW---------DSSLSVLKDIFPKTYTKENIMPADKKEKFLD 330 (408)
Q Consensus 272 LtP~Evgl~LralGf~~~T~IYlA~g~~---------~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~ 330 (408)
|+++|+....+++-=..-+.|.+.+|+. .+.+..+++.||.+.-.-..++.|+++.+++
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~ 170 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVE 170 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHH
Confidence 8999986544332222366888888874 1224567788886644444578888887773
No 12
>PLN02757 sirohydrochlorine ferrochelatase
Probab=31.51 E-value=49 Score=30.18 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=47.3
Q ss_pred cceEEEeecCCccccc-cCCCcchhhhHhhhhhcCceeechhHH---HHHHHHHHHHHhcccCCCCceEEEEeeeehhhc
Q 015343 184 KGNIRLATYFPSVNMR-KSTEKSNADLVACLAMFGTLELQPDVN---EVVDSMVERLRTLSRKSDGRFIAVDLRVDLLDN 259 (408)
Q Consensus 184 ~~vi~l~~f~~~~~~~-~~~~p~~~q~lRCr~~f~ALrF~p~I~---~lg~~lv~Rlr~~s~~~~gpyiAlHLR~Emla~ 259 (408)
.+-|.+.|+|-....- .+.+|..++.++++..-..+.+.++|- .|.+.+.+|+++......+ .+|
T Consensus 72 ~~~vvVvP~FL~~G~H~~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~~~--------~~~--- 140 (154)
T PLN02757 72 ASRVIVSPFFLSPGRHWQEDIPALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHVAG--------DAD--- 140 (154)
T ss_pred CCEEEEEEhhhcCCcchHhHHHHHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcccC--------CCC---
Confidence 3455555655321111 345777888888776555677777776 8888999999986543222 011
Q ss_pred cCCCCCCCCccc-c
Q 015343 260 KGCHEGNGRKSC-Y 272 (408)
Q Consensus 260 s~C~~~~~~g~C-L 272 (408)
+ |..-.++|+| |
T Consensus 141 ~-~~~~~~~~~~~~ 153 (154)
T PLN02757 141 E-CDVCAGTGKCRL 153 (154)
T ss_pred c-cceeeccccccc
Confidence 1 5555578999 6
No 13
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=28.78 E-value=49 Score=23.31 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=22.7
Q ss_pred ccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhh
Q 015343 301 SSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYL 344 (408)
Q Consensus 301 ~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~V 344 (408)
..++.|+++||++- .+....-+....+++.+|+|-+.
T Consensus 4 ~~v~~L~~mFP~l~-------~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 4 EALHDLKDMFPNLD-------EEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHHHCCCCC-------HHHHHHHHHHcCCCHHHHHHHHH
Confidence 34678999999962 23333333322466788888654
No 14
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=27.76 E-value=26 Score=32.02 Aligned_cols=43 Identities=16% Similarity=0.384 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhh
Q 015343 275 HEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLC 345 (408)
Q Consensus 275 ~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc 345 (408)
+|+-.+||.|||| |- .++|..|.+..- .|.|..+++||+++|=
T Consensus 95 eev~~~lK~L~YP----------------------~~-~isKS~L~a~gs-----~hsWP~lL~~L~WLv~ 137 (157)
T PF03801_consen 95 EEVPFLLKALGYP----------------------FA-TISKSSLQAPGS-----PHSWPHLLGALHWLVE 137 (157)
T ss_dssp HHHHHHHHHTT-S----------------------S-----HHHHHSTTS-----TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC----------------------cc-ccCHHHccCCCC-----cccHHHHHHHHHHHHH
Confidence 6888999999998 22 346776665441 2336667888888873
No 15
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=24.28 E-value=63 Score=24.83 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.4
Q ss_pred ccccCHHHHHHHHHHhCCCC
Q 015343 269 KSCYGAHEIAVFLRKIGYDK 288 (408)
Q Consensus 269 g~CLtP~Evgl~LralGf~~ 288 (408)
|..++++|+..+|+.|||.-
T Consensus 16 G~~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEV 35 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeE
Confidence 44599999999999999974
No 16
>PRK05578 cytidine deaminase; Validated
Probab=22.90 E-value=88 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHhCCCCCceEEEecccccccchHHHHhCCCccccccCC
Q 015343 280 FLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIM 320 (408)
Q Consensus 280 ~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe~L~ 320 (408)
+|..++ +.++.||+...+....-..|+++.|.-+++++|+
T Consensus 92 ~l~e~~-~~~~~v~l~~~~~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 92 VLAEFG-GPDLLVTLVAKDGPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred HHHHhC-CCCcEEEEEcCCCCEEEEEHHHhCcCcCChhhcC
Confidence 455554 5688999988776555578888889888887663
No 17
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=22.86 E-value=97 Score=27.18 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=30.2
Q ss_pred HHHHHhCCCCCceEEEecccccccchHHHHhCCCccccccC
Q 015343 279 VFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENI 319 (408)
Q Consensus 279 l~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe~L 319 (408)
.+|..++ +.++.|++...+.......|+++.|.-+.+++|
T Consensus 88 q~l~e~~-~~~~~v~~~~~~~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 88 QVLAEFA-GPDTPIYMTNNDGTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred HHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCcCCcCcC
Confidence 4677777 568999999887755567888888987776654
No 18
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.51 E-value=2.8e+02 Score=26.61 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=15.2
Q ss_pred hCCCeeeecCCCchhHHHHH
Q 015343 346 SQSDAFVPAISGLFYANVAG 365 (408)
Q Consensus 346 l~SDvFv~t~~Gnf~~~V~G 365 (408)
.+||.||++..|.+.-+.+-
T Consensus 197 ~~~~l~I~~Dsg~~HlA~a~ 216 (279)
T cd03789 197 ARADLVVTNDSGPMHLAAAL 216 (279)
T ss_pred HhCCEEEeeCCHHHHHHHHc
Confidence 34999999999988765433
No 19
>COG4878 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.30 E-value=88 Score=31.77 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCC-CCceEEEecccc--cccchHHHHhCCCccccccCCChhhHhhhh
Q 015343 275 HEIAVFLRKIGYD-KDTTIYLTQSRW--DSSLSVLKDIFPKTYTKENIMPADKKEKFL 329 (408)
Q Consensus 275 ~Evgl~LralGf~-~~T~IYlA~g~~--~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~ 329 (408)
+++..++..|--. =+|.||++.+++ ++....|.+.+|++-|-.++.+.+|..+|.
T Consensus 91 ~~L~~y~~~ls~~~y~~~vfVppSnil~q~gk~alvk~~p~lktissiy~~deykd~~ 148 (309)
T COG4878 91 YTLADYGDILSITGYDTFVFVPPSNILLQKGKFALVKQAPSLKTISSIYNTDEYKDFN 148 (309)
T ss_pred HHHHHHHHHHhccccceEEEeCcccccchhHHHHHHHhCCCcceeeeEecccccCccc
Confidence 3455666676555 578999999997 788999999999999999999999988885
No 20
>PRK10556 hypothetical protein; Provisional
Probab=20.28 E-value=65 Score=27.89 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.2
Q ss_pred cCHHHHHHHHHHhCCCCCce
Q 015343 272 YGAHEIAVFLRKIGYDKDTT 291 (408)
Q Consensus 272 LtP~Evgl~LralGf~~~T~ 291 (408)
|-|.||+.+|+..||..+..
T Consensus 3 LRPDEVArVLe~aGF~~D~v 22 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDVV 22 (111)
T ss_pred cChHHHHHHHHhcCceEEEe
Confidence 67999999999999986653
No 21
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.19 E-value=4.9e+02 Score=26.32 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=43.5
Q ss_pred ccCHHHHHHHHHHhCCCCCceEEEecccc--------cccchHHHHhCCCccc-------------cccCCChhhHhhhh
Q 015343 271 CYGAHEIAVFLRKIGYDKDTTIYLTQSRW--------DSSLSVLKDIFPKTYT-------------KENIMPADKKEKFL 329 (408)
Q Consensus 271 CLtP~Evgl~LralGf~~~T~IYlA~g~~--------~~~l~~Lk~~FPnl~t-------------Ke~L~~~eeL~~f~ 329 (408)
.++++||....+.+-=..-+.|.+++|+. .+-+..+++.+|.+.- ...+.+.|+++.++
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 39999985433322222355899998842 2335677888887631 12345677788887
Q ss_pred cccccchhhhhhhhhhhCCCee
Q 015343 330 DSADSEFEKVIDFYLCSQSDAF 351 (408)
Q Consensus 330 ~~~~s~~~AAlDy~Vcl~SDvF 351 (408)
+ |.+|-+-....++|
T Consensus 149 e-------AGl~~i~~~~~E~~ 163 (343)
T TIGR03551 149 E-------AGLDSMPGTAAEIL 163 (343)
T ss_pred H-------hCcccccCcchhhc
Confidence 3 56665543333444
Done!