Query 015343
Match_columns 408
No_of_seqs 167 out of 396
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:57:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.8 2.1E-18 7.2E-23 174.7 17.8 285 75-386 18-395 (408)
2 3zy2_A Putative GDP-fucose pro 99.5 4.9E-14 1.7E-18 140.7 14.7 258 77-373 6-350 (362)
3 2hhc_A NODZ, nodulation fucosy 98.2 3.8E-05 1.3E-09 74.9 15.8 260 78-364 3-294 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 98.1 0.00039 1.3E-08 73.1 22.3 259 78-382 144-435 (526)
5 1wgl_A TOLL-interacting protei 69.6 3.8 0.00013 30.7 3.4 49 300-355 10-58 (59)
6 2igp_A Retinoblastoma-associat 43.3 8 0.00027 32.8 1.3 42 275-345 73-114 (120)
7 2ve7_A Kinetochore protein HEC 31.1 15 0.00052 35.8 1.2 41 275-344 71-111 (315)
8 2dhy_A CUE domain-containing p 29.2 20 0.00069 27.5 1.4 42 300-348 19-60 (67)
9 1p3q_Q VPS9P, vacuolar protein 25.4 30 0.001 25.5 1.7 38 301-345 14-51 (54)
10 1otr_A Protein CUE2; protein-p 19.4 74 0.0025 22.8 2.7 43 300-349 5-47 (49)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.79 E-value=2.1e-18 Score=174.74 Aligned_cols=285 Identities=13% Similarity=0.152 Sum_probs=176.8
Q ss_pred ccCCCcEEEEEec-C-CchhhHHHHHhHHHHHHHhcce----EEeeccCC-CCCCC------CCCCCCcCChHHHHHhcc
Q 015343 75 IEESRGYVTFSLT-N-GPEYHVSQIADAVVVARVLRAT----LVVPDIRG-SKPGD------ERKFEDVYDVNKFIRSLD 141 (408)
Q Consensus 75 ~~~snGyl~v~~~-g-Glnq~R~~IcdaV~vArlLnAT----LVlP~l~~-S~w~d------~s~F~dIfD~dhFI~sL~ 141 (408)
....++||+-..+ | |+|+||...-.|.++|+.||.| ||||-... -.|.. .-.|++.||++++ +
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~ 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----N 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----H
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----H
Confidence 3467899998864 5 7999999999999999999999 99996643 33422 2259999999875 3
Q ss_pred CccEEeccCchhhhccc-cce----ee---CCCCC-----------------------------ChhHH-----------
Q 015343 142 GVVKVVKELPEEISFRN-LAV----VK---VPNRV-----------------------------TEDHI----------- 173 (408)
Q Consensus 142 ~dV~Ivk~LP~~~~~~~-~~~----~~---~p~~~-----------------------------s~~yy----------- 173 (408)
..|+|+.. +++.... +.. .. .+..+ .+-|-
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566532 2222110 000 00 00000 00000
Q ss_pred ------HhhchhhhhhcceEEEeecCCccccccCCCc--chhhhHhhhhhcCceeechhHHHHHHHHHHHHHhcc-----
Q 015343 174 ------IENIQPIFKAKGNIRLATYFPSVNMRKSTEK--SNADLVACLAMFGTLELQPDVNEVVDSMVERLRTLS----- 240 (408)
Q Consensus 174 ------~~~ilP~l~~~~vi~l~~f~~~~~~~~~~~p--~~~q~lRCr~~f~ALrF~p~I~~lg~~lv~Rlr~~s----- 240 (408)
...+.|.+.+..-++-.+....-.. ....| .+...+| ..|+|+++|.+.|++.++..-...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~-l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~~~h 245 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENL-LHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDDADR 245 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGS-BCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTTTTT
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccC-CccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccceee
Confidence 0011122222111110000000000 00011 2222222 479999999999999987654211
Q ss_pred ---------------cCCCCceEEEEeeee--hhhccCCCCCCCCccc-cCHHHHH-HHHHHhCCCCCceEEEecccccc
Q 015343 241 ---------------RKSDGRFIAVDLRVD--LLDNKGCHEGNGRKSC-YGAHEIA-VFLRKIGYDKDTTIYLTQSRWDS 301 (408)
Q Consensus 241 ---------------~~~~gpyiAlHLR~E--mla~s~C~~~~~~g~C-LtP~Evg-l~LralGf~~~T~IYlA~g~~~~ 301 (408)
...+|+|+|+|+|.. +.. ...| .+-++++ .+.+.|.=.+.+.||||+.+.+.
T Consensus 246 ~r~~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~---------~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~~~ 316 (408)
T 4ap5_A 246 IPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIWG---------HRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRK 316 (408)
T ss_dssp CCCCSSGGGCCCCTTCBCCEEEEEEEECCTTTTTT---------TCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCCHH
T ss_pred cccchhHhhhhcccccccCCCccccccccccchhh---------hhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCchh
Confidence 113578999999874 322 2356 5555554 34443433455689999987777
Q ss_pred cchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCCCceecCCCC
Q 015343 302 SLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGKNQILIPADI 381 (408)
Q Consensus 302 ~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl~SDvFv~t~~Gnf~~~V~GhR~~~G~~kti~P~r~ 381 (408)
.+..|++.+|.++.-. ...+++..+.+ +. .|.||.+||.+||+||||..++|+..|.-.|.+.|+....+-|+.
T Consensus 317 ~~~~l~~~~~~~~~~~--~~~~~~~~~~d---~~-~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t~~~~ 390 (408)
T 4ap5_A 317 EYEELKKLLPEMVRFE--PTWEELELYKD---GG-VAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRF 390 (408)
T ss_dssp HHHHHHHHCTTEECCC--CCHHHHHHHHH---HH-HHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGTSCBC
T ss_pred HHHHHHHhCCCcEEec--CcchhhhccCc---ch-hhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCcccccc
Confidence 7789999999876433 34566777753 34 699999999999999999999999999999999999988888887
Q ss_pred CCCCC
Q 015343 382 SGSSA 386 (408)
Q Consensus 382 ~~~~~ 386 (408)
-++..
T Consensus 391 c~~~~ 395 (408)
T 4ap5_A 391 CGDQE 395 (408)
T ss_dssp CCTTC
T ss_pred CCCCc
Confidence 76544
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.54 E-value=4.9e-14 Score=140.69 Aligned_cols=258 Identities=17% Similarity=0.268 Sum_probs=160.1
Q ss_pred CCCcEEEEE-ecCCchhhHHHHHhHHHHHHHhcceEEeeccCC-CCCCCCC---CCCCcCChHHHHHhccCccEEecc--
Q 015343 77 ESRGYVTFS-LTNGPEYHVSQIADAVVVARVLRATLVVPDIRG-SKPGDER---KFEDVYDVNKFIRSLDGVVKVVKE-- 149 (408)
Q Consensus 77 ~snGyl~v~-~~gGlnq~R~~IcdaV~vArlLnATLVlP~l~~-S~w~d~s---~F~dIfD~dhFI~sL~~dV~Ivk~-- 149 (408)
.+||||+-= |-|-+.||-....-+.+.|+.||.|||||-+-. .. ++ + .|++-|+++. |+..-||+..
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~-~~~vpf~~yF~v~~----l~~yhrvi~me~ 79 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PE-TKMIPFEFLFQVGT----VAKYTRVVTMQE 79 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SS-CEEECHHHHBCHHH----HTTTSCEECHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Cc-ccccchhheeecch----hhhhceeeeHHH
Confidence 479999886 999999999999999999999999999988753 22 22 3 3888898876 4444555422
Q ss_pred ----C-----chhhh-----------------------ccccc-------eeeC-------C--C-------CCChhHHH
Q 015343 150 ----L-----PEEIS-----------------------FRNLA-------VVKV-------P--N-------RVTEDHII 174 (408)
Q Consensus 150 ----L-----P~~~~-----------------------~~~~~-------~~~~-------p--~-------~~s~~yy~ 174 (408)
| |++-. +.+|+ .++. | . ....+|.
T Consensus 80 Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~- 158 (362)
T 3zy2_A 80 FTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWL- 158 (362)
T ss_dssp HHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHH-
T ss_pred HHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHH-
Confidence 1 11100 00110 0000 0 0 0011111
Q ss_pred hhchhhhhhcceEEEeecCCccccccCCCcchhhhHhhhhhcCceeechhHHHHHHHHHHHHHhcccCCCCceEEEEeee
Q 015343 175 ENIQPIFKAKGNIRLATYFPSVNMRKSTEKSNADLVACLAMFGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV 254 (408)
Q Consensus 175 ~~ilP~l~~~~vi~l~~f~~~~~~~~~~~p~~~q~lRCr~~f~ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~ 254 (408)
+.-.| .+|-|+.|.. .| .+.......-.+| +-|+++++|.+.|++.++.-- ++||||+|||.
T Consensus 159 ~~~p~--~~~pVlAf~g-aP-a~FPv~~e~r~Lq--------kYm~WS~~i~~~a~~fI~~~L------~rpyVgIHLR~ 220 (362)
T 3zy2_A 159 EKFPS--EEYPVLAFSS-AP-APFPSKGKVWSIQ--------KYLRWSSRITEQAKKFISANL------AKPFVAVHLRN 220 (362)
T ss_dssp HHSCT--TTCSEEEESS-CS-SCSSCCGGGGGGG--------GGCCBCHHHHHHHHHHHHHHC------CSSEEEEEECC
T ss_pred HhCCc--ccCceEeecC-CC-CCCCcChhhHhHH--------HhccccHHHHHHHHHHHHHhc------CCCeEEEEEec
Confidence 12222 3678888763 11 1211111112344 479999999999999988744 25999999999
Q ss_pred e--------hhhc---------cCCCCCC-C-----Cccc-cCHHHHHH-HHHHhCCCCCceEEEecccccccchHHHHh
Q 015343 255 D--------LLDN---------KGCHEGN-G-----RKSC-YGAHEIAV-FLRKIGYDKDTTIYLTQSRWDSSLSVLKDI 309 (408)
Q Consensus 255 E--------mla~---------s~C~~~~-~-----~g~C-LtP~Evgl-~LralGf~~~T~IYlA~g~~~~~l~~Lk~~ 309 (408)
- +++- ..|.+.. . ...| =+.+++.. +.+.+.--+-..||||+..-+ .++.|++.
T Consensus 221 G~DW~~aC~hlk~~~~~~lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~-~~~ELk~~ 299 (362)
T 3zy2_A 221 DADWVRVCEHIDTTTNRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH-MIDEINEA 299 (362)
T ss_dssp CHHHHHHHHTCCTTTCCCCTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC-CHHHHHHH
T ss_pred CCcHHHHHhhhccccCcccccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH-HHHHHHHH
Confidence 3 3221 1243211 1 1368 56666543 322222224669999996544 67889988
Q ss_pred CCCccccccCCChhhHhhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHHhhcCCC
Q 015343 310 FPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKRIASGKN 373 (408)
Q Consensus 310 FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl~SDvFv~t~~Gnf~~~V~GhR~~~G~~ 373 (408)
|+....+ +. .+.. . .|+||.+||.+||+||||..++|+..|.-+|...|+.
T Consensus 300 L~~~~v~--vv------~~~p----e-~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G~~ 350 (362)
T 3zy2_A 300 LKPYEIE--AH------RQEP----D-DMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAGQS 350 (362)
T ss_dssp HGGGTCC--EE------CCSS----C-CHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSSSS
T ss_pred hhccCce--EE------EeCC----c-hhHHHHHHHHhCCEeecCccccccHHHHHHHHhcCCC
Confidence 8652111 10 1111 1 4999999999999999999999999999999999943
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=98.17 E-value=3.8e-05 Score=74.90 Aligned_cols=260 Identities=15% Similarity=0.156 Sum_probs=129.4
Q ss_pred CCcEEEEEecCCchhhHHHHHhHHHHHHHhcceEEeeccCCCCCCCCCCCCCcCChHHHHHhccC--ccEEecc-Cchhh
Q 015343 78 SRGYVTFSLTNGPEYHVSQIADAVVVARVLRATLVVPDIRGSKPGDERKFEDVYDVNKFIRSLDG--VVKVVKE-LPEEI 154 (408)
Q Consensus 78 snGyl~v~~~gGlnq~R~~IcdaV~vArlLnATLVlP~l~~S~w~d~s~F~dIfD~dhFI~sL~~--dV~Ivk~-LP~~~ 154 (408)
+..||.+...|||.+|--+++-|.++|.+.|.+|++--....+.. ..|.+.| .-.|. ...+ ...+... .|...
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~~ 78 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQL 78 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBTCTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCCcccCC--CCccccC-ccccc-chhhhcccceecccccccc
Confidence 567999999999999889999999999999999888644422211 2355555 22232 1110 0000110 01000
Q ss_pred hccccceeeCCCCCCh----hHH--Hhhchh-------hhh--hc-ceEEEee---cCCccccccCCCcchhhhHhhhhh
Q 015343 155 SFRNLAVVKVPNRVTE----DHI--IENIQP-------IFK--AK-GNIRLAT---YFPSVNMRKSTEKSNADLVACLAM 215 (408)
Q Consensus 155 ~~~~~~~~~~p~~~s~----~yy--~~~ilP-------~l~--~~-~vi~l~~---f~~~~~~~~~~~p~~~q~lRCr~~ 215 (408)
..... + .|..+.. ..| .+++.| ++. .+ ...++.+ +.+. .-.+ .-...
T Consensus 79 -~~~~~-~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~-------~~~~----~~~~i 144 (330)
T 2hhc_A 79 -SFPGP-F-FPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWR-------CSEE----AERLI 144 (330)
T ss_dssp -CCCSS-E-ESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTS-------SCHH----HHHHH
T ss_pred -cCCCC-c-CchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccc-------hhhh----hHHHH
Confidence 00000 0 0111100 011 122211 111 11 1122332 1111 0111 12334
Q ss_pred cCceeechhHHHHHHHHHHHHHhcccCCCCceEEEEeee-ehhhccCCCCCCC-CccccCHHHHHHHHHHh-C-CC-CCc
Q 015343 216 FGTLELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-DLLDNKGCHEGNG-RKSCYGAHEIAVFLRKI-G-YD-KDT 290 (408)
Q Consensus 216 f~ALrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-Emla~s~C~~~~~-~g~CLtP~Evgl~Lral-G-f~-~~T 290 (408)
|.-|+++++|++..+++.+.+-. +.++|+||.|. |-. ..|.+..- ...|..-++.-.-++.+ . .+ ++.
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~-----~~~~VGVHIRrgD~~--~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~ 217 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS-----GHSIIGVHVRHGNGE--DIMEHAPYWADSELALHQVCMAIRKAKALSYPKPV 217 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT-----TSEEEEEEECC--------------CHHHHHHHHHHHHHHHHHHTSCCSSCE
T ss_pred HhcCCccHHHHHHHHHHHHHhcc-----CCceEEEEEecCCCC--cccccCcchHHHhHHHHHHHHHHHHHHhccCcCce
Confidence 57789999999988888765421 25999999997 521 12221100 01122223332222222 2 22 468
Q ss_pred eEEEecccccccchHHHHhCCCccccc-cCCC-h-hhH-hhhhcccccchhhhhhhhhhhCCCeee-ecCCCchhHHHH
Q 015343 291 TIYLTQSRWDSSLSVLKDIFPKTYTKE-NIMP-A-DKK-EKFLDSADSEFEKVIDFYLCSQSDAFV-PAISGLFYANVA 364 (408)
Q Consensus 291 ~IYlA~g~~~~~l~~Lk~~FPnl~tKe-~L~~-~-eeL-~~f~~~~~s~~~AAlDy~Vcl~SDvFv-~t~~Gnf~~~V~ 364 (408)
.||||+.+.+ .++.+++.||++.+.. .+.. . ..+ .+..+. .....+.+|.+..+++|.+| .+..|+|+...+
T Consensus 218 ~vfvaSDd~~-~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 218 KVFLCTDSAQ-VLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGI-EGGASALIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp EEEEEESCHH-HHHHHHHHSTTEECCCC-----------CHHHHH-HHHHHHHHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred EEEEEeCCHH-HHHHHHHHcCCcccccceeecccccccccCchhh-ccchHHHHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 9999998864 5778999999843321 1111 0 000 000000 12336889999999999999 545888987655
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=98.08 E-value=0.00039 Score=73.14 Aligned_cols=259 Identities=14% Similarity=0.099 Sum_probs=142.6
Q ss_pred CCcEEEEEe--cCCchhhHHHHHhHHHHHHHhcceEEeeccCCCCCCC-CCCCCCcCChHHHHHhccCccEEeccCchhh
Q 015343 78 SRGYVTFSL--TNGPEYHVSQIADAVVVARVLRATLVVPDIRGSKPGD-ERKFEDVYDVNKFIRSLDGVVKVVKELPEEI 154 (408)
Q Consensus 78 snGyl~v~~--~gGlnq~R~~IcdaV~vArlLnATLVlP~l~~S~w~d-~s~F~dIfD~dhFI~sL~~dV~Ivk~LP~~~ 154 (408)
+..||+... ..|+..+-..++=|..+|-.+|.|||+-.- -|.- ...|.++|.. +...+... |.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~---~w~Y~~g~w~~yF~P--~s~~C~~~-------~~-- 209 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQ---NWRYATGGWETVFRP--VSETCTDR-------SG-- 209 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECT---TCSSCTTCGGGTBCC--SCSSCCCC-------CC--
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECC---CCCcCCCCHHHhhhC--cCccccCC-------Cc--
Confidence 458999987 479998888899999999999999999432 2432 2467777775 22222211 10
Q ss_pred hccccceeeCCCCCChhHHHhhchhhhhhcceEEEeecCCccccc--c--CCCcchh----hhHh-------h-hhhcCc
Q 015343 155 SFRNLAVVKVPNRVTEDHIIENIQPIFKAKGNIRLATYFPSVNMR--K--STEKSNA----DLVA-------C-LAMFGT 218 (408)
Q Consensus 155 ~~~~~~~~~~p~~~s~~yy~~~ilP~l~~~~vi~l~~f~~~~~~~--~--~~~p~~~----q~lR-------C-r~~f~A 218 (408)
.....|..... -.++.||.+..+. .+.-+ . -..|.+. +++. | .+.-.-
T Consensus 210 -------~~~~~w~~~~~--------~~~~~vV~~~~i~-~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl 273 (526)
T 2de0_X 210 -------ISTGHWSGEVK--------DKNVQVVELPIVD-SLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYL 273 (526)
T ss_dssp -------SCCCBCCCTTG--------GGGCSEEEECCGG-GCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred -------cccCCCCCccc--------CCCcceEEeeccc-cccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHH
Confidence 00011111000 0133333321110 00000 0 0123221 2221 0 112224
Q ss_pred eeechhHHHHHHHHHHHHHhcccCCCCceEEEEeee-ehhhccCCCCCCCCccccCHHH----HHHH---HHHhCCCCCc
Q 015343 219 LELQPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRV-DLLDNKGCHEGNGRKSCYGAHE----IAVF---LRKIGYDKDT 290 (408)
Q Consensus 219 LrF~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~-Emla~s~C~~~~~~g~CLtP~E----vgl~---LralGf~~~T 290 (408)
+|++++|++..+++.+++. -++|.|+||.|. |-+... ..+...+| +..+ |+....+..+
T Consensus 274 ~rP~~~i~~~I~~~~~~l~-----~~~piVGVHIRrGDk~~~E--------~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~ 340 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLG-----FKHPVIGVHVRRTDKVGTE--------AAFHPIEEYMVHVEEHFQLLARRMQVDKK 340 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHT-----CCSSEEEEEECCC-----C--------CCSCSHHHHHHHHHHHHHHHHTTSCCSSC
T ss_pred cCCCHHHHHHHHHHHHHhC-----CCCCEEEEEEeCCCCCccc--------cccCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 8999999998888887764 257999999997 553311 11111122 2222 3344678889
Q ss_pred eEEEecccccccchHHHHhCCCc--cccccCC-ChhhHhhhhcccccchhhhhhhhhhhCCCeeeecCCCchhHHHHHHH
Q 015343 291 TIYLTQSRWDSSLSVLKDIFPKT--YTKENIM-PADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAISGLFYANVAGKR 367 (408)
Q Consensus 291 ~IYlA~g~~~~~l~~Lk~~FPnl--~tKe~L~-~~eeL~~f~~~~~s~~~AAlDy~Vcl~SDvFv~t~~Gnf~~~V~GhR 367 (408)
.||||+.+-+ .++.+++.||+. ++-.... +...-..+. ..+-..+.+|.++.+++|+||+|.++||+..+...|
T Consensus 341 ~ifLATDDp~-v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s--~~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~ 417 (526)
T 2de0_X 341 RVYLATDDPS-LLKEAKTKYPNYEFISDNSISWSAGLHNRYT--ENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIM 417 (526)
T ss_dssp EEEEEESCHH-HHHHHHHHCTTSEEECCCCSSCSSGGGGGTC--CTHHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHH
T ss_pred eEEEEcCCHH-HHHHHHHhCCCCEEecCcccccccCcccccc--HHHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHh
Confidence 9999987642 245667789984 3222111 111111121 112246899999999999999999999999988887
Q ss_pred hhcCC---CceecCCCCC
Q 015343 368 IASGK---NQILIPADIS 382 (408)
Q Consensus 368 ~~~G~---~kti~P~r~~ 382 (408)
.-.+. .+...+|.+.
T Consensus 418 ~~~~~~~~~~~~SLD~~~ 435 (526)
T 2de0_X 418 QTLHPDASANFHSLDDIY 435 (526)
T ss_dssp TTSSSCCTTCEEESSCCS
T ss_pred cCcCccccccccCCcccc
Confidence 65542 2445555443
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=69.64 E-value=3.8 Score=30.67 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=35.8
Q ss_pred cccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhhhCCCeeeecC
Q 015343 300 DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAI 355 (408)
Q Consensus 300 ~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl~SDvFv~t~ 355 (408)
+..++.|++|||++ ..+-++..+......+.+|||-+..+..+-|=|++
T Consensus 10 ee~l~~L~emFP~l-------d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-------DQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-------CHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 56689999999996 22344444433457789999999999888776654
No 6
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=43.30 E-value=8 Score=32.76 Aligned_cols=42 Identities=12% Similarity=0.317 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhh
Q 015343 275 HEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLC 345 (408)
Q Consensus 275 ~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc 345 (408)
+||-.+||+|||| |+ .||..|.+.. ..|.|..+++||+++|=
T Consensus 73 eev~~~lK~L~YP----------------------~~--isKS~L~a~g-----~pHsWp~~L~~L~WLve 114 (120)
T 2igp_A 73 EEVPRIFKDLGYP----------------------FA--LSKSSMYTVG-----APHTWPHIVAALVWLID 114 (120)
T ss_dssp HHHHHHHHHTTCC----------------------SC--CCHHHHHTTT-----STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----------------------ce--eCHHHhcCCC-----CCccHHHHHHHHHHHHH
Confidence 7889999999998 43 6677665543 12446778899998873
No 7
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=31.09 E-value=15 Score=35.77 Aligned_cols=41 Identities=12% Similarity=0.351 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCceEEEecccccccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhh
Q 015343 275 HEIAVFLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYL 344 (408)
Q Consensus 275 ~Evgl~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~V 344 (408)
+||-.+||+|||| |+ .||+.|.++. ..|.|..+++||+++|
T Consensus 71 eev~~~lK~L~YP----------------------~~--isKS~L~a~g-----~pHsWp~~Lg~L~WLv 111 (315)
T 2ve7_A 71 EEVPRIFKDLGYP----------------------FA--LSKSSMYTVG-----APHTWPHIVAALVWLI 111 (315)
T ss_dssp HHHHHHHHHTTCS----------------------SC--CCHHHHHTTT-----STTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----------------------ce--eCHHHhcCCC-----CCCcHHHHHHHHHHHH
Confidence 7889999999999 43 6787776544 1345777889999987
No 8
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.17 E-value=20 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=26.5
Q ss_pred cccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhhhCC
Q 015343 300 DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQS 348 (408)
Q Consensus 300 ~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl~S 348 (408)
+..++.|++|||++- ++ .++.-+....+.+.+|||-+..+..
T Consensus 19 ~~~v~~L~~MFP~lD-~~------vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMD-YD------IIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHHHHCSSSC-HH------HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HH------HHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 456889999999963 33 2222222223567899998776543
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=25.38 E-value=30 Score=25.52 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=19.9
Q ss_pred ccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhh
Q 015343 301 SSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLC 345 (408)
Q Consensus 301 ~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vc 345 (408)
..+..|++|||++- +|-| +.......+...++||....
T Consensus 14 ~~~~~L~~MFP~lD-~evI------~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD-PSLI------EDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTSC-HHHH------HHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHcccCC-HHHH------HHHHHHcCCCHHHHHHHHHh
Confidence 45789999999973 4422 22222223566788887654
No 10
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=19.44 E-value=74 Score=22.83 Aligned_cols=43 Identities=28% Similarity=0.473 Sum_probs=27.1
Q ss_pred cccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhhhCCC
Q 015343 300 DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSD 349 (408)
Q Consensus 300 ~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl~SD 349 (408)
+....-|.+|||++ +.++..--+....+.+.+|+|-++-..+|
T Consensus 5 e~~v~~L~EMFP~~-------~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 5 ESKLSILMDMFPAI-------SKSKLQVHLLENNNDLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHHHCSSS-------CHHHHHHHHHHTTTCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence 34467899999995 22343333333346678999888766443
Done!