Query 015343
Match_columns 408
No_of_seqs 167 out of 396
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 10:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015343.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015343hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 67.5 2.3 0.00017 30.3 3.5 50 299-355 9-58 (59)
2 d1mn3a_ a.5.2.4 (A:) Vacuolar 26.6 17 0.0013 25.1 2.3 38 300-344 13-50 (54)
3 d1nb5i_ d.17.1.2 (I:) Cystatin 24.4 39 0.0028 25.9 4.3 37 222-258 13-49 (98)
4 d1vjna_ d.157.1.4 (A:) Hypothe 21.0 62 0.0045 26.8 5.5 53 96-153 142-200 (209)
5 d2fr5a1 c.97.1.1 (A:11-146) mo 20.5 27 0.002 27.8 2.8 38 280-319 95-132 (136)
6 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 18.9 15 0.0011 25.4 0.7 43 301-350 19-61 (63)
7 d2g7ja1 d.198.5.1 (A:1-112) Pu 18.3 23 0.0017 27.4 1.7 18 272-289 3-20 (112)
8 d1uwza_ c.97.1.1 (A:) mono-dom 17.5 48 0.0035 26.0 3.7 39 280-319 92-130 (130)
9 d1stfi_ d.17.1.2 (I:) Cystatin 15.0 56 0.0041 24.9 3.3 37 222-258 13-49 (98)
10 d1y0ya1 b.49.3.1 (A:73-163) Fr 14.6 33 0.0024 25.3 1.8 16 77-92 8-23 (91)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.48 E-value=2.3 Score=30.31 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=35.1
Q ss_pred ccccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhhhCCCeeeecC
Q 015343 299 WDSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDAFVPAI 355 (408)
Q Consensus 299 ~~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl~SDvFv~t~ 355 (408)
-+..+..|++|||++- ++ -++.-+....+.+.+|||-+.-..-+.|-|+.
T Consensus 9 ~Ee~i~~LkeMFP~~D-~~------vI~~VL~a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMD-QE------VIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSSC-HH------HHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cHHHHHHHHHHCCCCC-HH------HHHHHHHHcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 3566899999999974 32 22222322346778999999988888887764
No 2
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.63 E-value=17 Score=25.08 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=23.8
Q ss_pred cccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhh
Q 015343 300 DSSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYL 344 (408)
Q Consensus 300 ~~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~V 344 (408)
+..++.|++|||++- ++ -++.......+.+.+|||-..
T Consensus 13 ~e~~~~Lk~MFP~~D-~~------VI~~VL~a~~G~vd~aidaLL 50 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMD-PS------LIEDVCIAKKSRIEPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHCTTSC-HH------HHHHHHSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HH------HHHHHHHHcCCCHHHHHHHHH
Confidence 345889999999963 22 233333333466788888654
No 3
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.39 E-value=39 Score=25.88 Aligned_cols=37 Identities=22% Similarity=0.505 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCceEEEEeeeehhh
Q 015343 222 QPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVDLLD 258 (408)
Q Consensus 222 ~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~Emla 258 (408)
++|||++++++..-+.++..+.-..|-|+.-|...+|
T Consensus 13 t~Eiq~I~d~Vk~~le~k~g~~~~~F~av~yktQvVA 49 (98)
T d1nb5i_ 13 TPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVA 49 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCCSCCEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEc
Confidence 7899999999999998877666667888888877666
No 4
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=20.99 E-value=62 Score=26.76 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=34.0
Q ss_pred HHHhHHHHHHHhcceEEeeccCCCCCCC-CCCCCCcCChHHHHHhccC-----ccEEeccCchh
Q 015343 96 QIADAVVVARVLRATLVVPDIRGSKPGD-ERKFEDVYDVNKFIRSLDG-----VVKVVKELPEE 153 (408)
Q Consensus 96 ~IcdaV~vArlLnATLVlP~l~~S~w~d-~s~F~dIfD~dhFI~sL~~-----dV~Ivk~LP~~ 153 (408)
.--+|+.+|+.|++..|||-= |+. ...| ++=..|.|++.++. ++-.+.++|++
T Consensus 142 ~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~ 200 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDSYERVGNILELFEKPKE 200 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSCCEECCSEEEESSCCCS
T ss_pred CHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhhhcccCcEEEeccCCCC
Confidence 456899999999999999952 322 2222 34456788887763 33334555643
No 5
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.47 E-value=27 Score=27.83 Aligned_cols=38 Identities=16% Similarity=0.518 Sum_probs=29.5
Q ss_pred HHHHhCCCCCceEEEecccccccchHHHHhCCCccccccC
Q 015343 280 FLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENI 319 (408)
Q Consensus 280 ~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe~L 319 (408)
+|.. |..++.||+...+.+.....|+++.|.-+++++|
T Consensus 95 ~l~E--~~~~~~i~~~~~~~~~~~~tl~eLLP~~F~~~~L 132 (136)
T d2fr5a1 95 VMRE--FGTDWAVYMTKPDGTFVVRTVQELLPASFGPEDL 132 (136)
T ss_dssp HHHH--TCSSCEEEEECTTSCEEEEEHHHHSTTCCCGGGG
T ss_pred HHHh--hCCCceEEEECCCCCEEEeEHHHhCcCCCChHHh
Confidence 4444 4578899999877765566899999999988876
No 6
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.89 E-value=15 Score=25.41 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=26.7
Q ss_pred ccchHHHHhCCCccccccCCChhhHhhhhcccccchhhhhhhhhhhCCCe
Q 015343 301 SSLSVLKDIFPKTYTKENIMPADKKEKFLDSADSEFEKVIDFYLCSQSDA 350 (408)
Q Consensus 301 ~~l~~Lk~~FPnl~tKe~L~~~eeL~~f~~~~~s~~~AAlDy~Vcl~SDv 350 (408)
..++.|+++-|...+...-...-+.+ +-+..|+|||-.++.+|
T Consensus 19 ~~~~~L~~llP~~~~~~~~~~k~sKa-------~iL~~Av~yI~~Lq~~v 61 (63)
T d1a0aa_ 19 VALHELASLIPAEWKQQNVSAAPSKA-------TTVEAACRYIRHLQQNG 61 (63)
T ss_dssp HHHHHHHHTSCHHHHTSSCCCCSCTT-------HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHCCCcccccCCcccccHH-------HHHHHHHHHHHHHHHhh
Confidence 45678888888654443222211222 33479999999998765
No 7
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=18.27 E-value=23 Score=27.43 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.8
Q ss_pred cCHHHHHHHHHHhCCCCC
Q 015343 272 YGAHEIAVFLRKIGYDKD 289 (408)
Q Consensus 272 LtP~Evgl~LralGf~~~ 289 (408)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999743
No 8
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=17.50 E-value=48 Score=25.98 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=27.5
Q ss_pred HHHHhCCCCCceEEEecccccccchHHHHhCCCccccccC
Q 015343 280 FLRKIGYDKDTTIYLTQSRWDSSLSVLKDIFPKTYTKENI 319 (408)
Q Consensus 280 ~LralGf~~~T~IYlA~g~~~~~l~~Lk~~FPnl~tKe~L 319 (408)
+|..++ +.++.||+...+.+-....|+++.|.=+++++|
T Consensus 92 ~l~E~~-~~~~~i~l~~~~g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 92 VISELC-TKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHS-CTTCEEEEECSSSCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCCCCcccC
Confidence 344443 467899999877643334689999998888876
No 9
>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.00 E-value=56 Score=24.87 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCceEEEEeeeehhh
Q 015343 222 QPDVNEVVDSMVERLRTLSRKSDGRFIAVDLRVDLLD 258 (408)
Q Consensus 222 ~p~I~~lg~~lv~Rlr~~s~~~~gpyiAlHLR~Emla 258 (408)
+|||+++.+++..-|.+++.+.--.|-|+..|.-.+|
T Consensus 13 t~Eiq~i~d~Vk~~~e~k~~~k~~~f~av~yktQvVa 49 (98)
T d1stfi_ 13 TAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVA 49 (98)
T ss_dssp CHHHHHHHHTTHHHHHHHHTCCCSCCEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceeEEEEEEEEEEc
Confidence 7899999999999998887665567778877776555
No 10
>d1y0ya1 b.49.3.1 (A:73-163) Frv operon protein FrvX {Pyrococcus horikoshii [TaxId: 53953]}
Probab=14.56 E-value=33 Score=25.33 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.8
Q ss_pred CCCcEEEEEecCCchh
Q 015343 77 ESRGYVTFSLTNGPEY 92 (408)
Q Consensus 77 ~snGyl~v~~~gGlnq 92 (408)
.+||||.|...||.+.
T Consensus 8 ~~~G~l~v~~vGG~~~ 23 (91)
T d1y0ya1 8 EKNGFLRVAPIGGVDP 23 (91)
T ss_dssp CTTSCEEEEEESSCCG
T ss_pred CCCCeEEEEecCCCCh
Confidence 4799999999999764
Done!