Query 015344
Match_columns 408
No_of_seqs 206 out of 1139
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 3.8E-45 8.1E-50 371.3 22.6 287 90-389 24-314 (437)
2 PTZ00206 amino acid transporte 100.0 6.9E-38 1.5E-42 324.1 23.9 290 102-399 58-362 (467)
3 KOG1304 Amino acid transporter 100.0 1.2E-36 2.5E-41 305.6 23.1 273 101-391 44-331 (449)
4 PF01490 Aa_trans: Transmembra 100.0 4.2E-38 9.1E-43 319.2 2.4 290 102-401 1-300 (409)
5 PLN03074 auxin influx permease 100.0 6.1E-33 1.3E-37 286.9 22.7 260 102-385 44-316 (473)
6 KOG1305 Amino acid transporter 100.0 1.6E-29 3.4E-34 255.8 15.0 261 101-375 3-268 (411)
7 KOG4303 Vesicular inhibitory a 99.9 5.8E-29 1.3E-33 238.0 4.6 285 101-406 114-415 (524)
8 COG0814 SdaC Amino acid permea 99.9 4E-25 8.6E-30 225.5 23.4 262 101-376 6-268 (415)
9 PRK10483 tryptophan permease; 99.7 2.4E-16 5.1E-21 159.8 23.5 236 99-354 6-243 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.7 1.5E-15 3.2E-20 154.3 24.4 231 103-354 2-235 (394)
11 PRK09664 tryptophan permease T 99.7 3.4E-15 7.3E-20 151.3 23.6 232 102-354 7-244 (415)
12 TIGR00837 araaP aromatic amino 99.7 1E-15 2.3E-20 154.6 16.8 237 109-363 2-238 (381)
13 PRK15132 tyrosine transporter 99.6 2.4E-14 5.1E-19 145.4 22.1 237 104-363 3-241 (403)
14 PRK13629 threonine/serine tran 99.5 4.8E-12 1E-16 128.8 20.6 244 111-363 26-279 (443)
15 TIGR00814 stp serine transport 99.4 8.2E-12 1.8E-16 127.0 18.7 244 109-364 8-254 (397)
16 TIGR00912 2A0309 spore germina 99.1 7.5E-09 1.6E-13 103.8 18.9 237 103-366 2-241 (359)
17 PRK10655 potE putrescine trans 99.0 4.7E-08 1E-12 100.7 21.1 240 100-359 4-245 (438)
18 TIGR00909 2A0306 amino acid tr 98.9 1.5E-07 3.2E-12 96.6 20.8 243 101-359 2-251 (429)
19 TIGR00905 2A0302 transporter, 98.9 2.1E-07 4.6E-12 96.9 22.0 244 101-358 6-253 (473)
20 PRK10435 cadB lysine/cadaverin 98.9 1.5E-07 3.3E-12 97.0 20.4 240 100-361 3-245 (435)
21 PF03845 Spore_permease: Spore 98.9 3.6E-07 7.8E-12 90.4 21.2 235 103-365 1-236 (320)
22 TIGR01773 GABAperm gamma-amino 98.8 7E-07 1.5E-11 92.4 21.8 238 99-359 9-257 (452)
23 PRK11021 putative transporter; 98.8 1.3E-06 2.7E-11 89.4 23.3 228 105-357 2-231 (410)
24 PRK10644 arginine:agmatin anti 98.8 6.7E-07 1.5E-11 92.4 21.2 239 100-358 6-246 (445)
25 TIGR00906 2A0303 cationic amin 98.7 2.4E-06 5.2E-11 91.0 23.1 249 100-358 26-286 (557)
26 PRK11049 D-alanine/D-serine/gl 98.6 4.1E-06 8.9E-11 87.3 22.0 239 100-358 18-266 (469)
27 TIGR00911 2A0308 L-type amino 98.6 4.1E-06 8.9E-11 87.9 20.5 244 100-358 40-290 (501)
28 PRK11357 frlA putative fructos 98.6 4.6E-06 1E-10 86.2 19.8 236 101-357 7-249 (445)
29 PRK10249 phenylalanine transpo 98.6 7.2E-06 1.6E-10 85.2 21.1 236 101-357 20-263 (458)
30 TIGR03810 arg_ornith_anti argi 98.6 7.1E-06 1.5E-10 85.4 20.7 246 102-362 1-253 (468)
31 TIGR00913 2A0310 amino acid pe 98.5 1.2E-05 2.6E-10 83.8 22.1 237 101-356 1-250 (478)
32 PRK10580 proY putative proline 98.5 1.9E-05 4.2E-10 81.9 23.3 236 100-356 7-252 (457)
33 TIGR00908 2A0305 ethanolamine 98.5 1.3E-05 2.8E-10 82.8 21.4 236 101-356 6-244 (442)
34 TIGR00930 2a30 K-Cl cotranspor 98.5 9.3E-06 2E-10 91.1 21.7 248 100-357 74-334 (953)
35 PRK11387 S-methylmethionine tr 98.5 1.2E-05 2.5E-10 83.9 21.2 238 101-358 13-261 (471)
36 PRK15049 L-asparagine permease 98.5 1.5E-05 3.3E-10 83.7 22.0 238 101-359 27-276 (499)
37 PRK10238 aromatic amino acid t 98.5 1.1E-05 2.4E-10 83.8 20.4 234 101-354 11-251 (456)
38 PRK10746 putative transport pr 98.5 2.5E-05 5.5E-10 81.3 22.3 238 101-357 9-254 (461)
39 KOG3832 Predicted amino acid t 98.5 1.6E-06 3.5E-11 79.0 10.9 210 109-325 17-300 (319)
40 PF13520 AA_permease_2: Amino 98.4 4.4E-06 9.6E-11 85.4 15.0 239 105-364 2-247 (426)
41 KOG1287 Amino acid transporter 98.4 2.7E-06 6E-11 87.4 13.0 242 98-359 8-260 (479)
42 PRK10836 lysine transporter; P 98.3 0.00014 3.1E-09 76.2 23.5 243 101-362 14-264 (489)
43 PRK10197 gamma-aminobutyrate t 98.3 6.6E-05 1.4E-09 77.8 19.2 224 114-357 4-235 (446)
44 COG0531 PotE Amino acid transp 98.2 0.00018 3.9E-09 74.1 20.4 248 101-364 11-262 (466)
45 COG1113 AnsP Gamma-aminobutyra 98.1 0.00011 2.4E-09 74.8 15.4 277 101-400 12-307 (462)
46 TIGR03428 ureacarb_perm permea 98.0 0.0024 5.1E-08 66.7 24.6 253 101-363 12-273 (475)
47 PRK15238 inner membrane transp 97.9 0.0016 3.5E-08 68.4 21.3 238 101-356 6-264 (496)
48 TIGR00907 2A0304 amino acid pe 97.8 0.0036 7.7E-08 65.4 22.3 60 299-363 218-277 (482)
49 PF00324 AA_permease: Amino ac 97.7 0.00036 7.8E-09 72.8 12.2 238 114-366 7-263 (478)
50 TIGR00800 ncs1 NCS1 nucleoside 97.3 0.075 1.6E-06 55.1 23.4 189 168-367 76-275 (442)
51 COG3949 Uncharacterized membra 97.3 0.016 3.4E-07 57.1 16.4 102 107-213 6-110 (349)
52 TIGR00910 2A0307_GadC glutamat 97.3 0.016 3.5E-07 61.1 18.0 50 301-355 197-246 (507)
53 COG0833 LysP Amino acid transp 97.1 0.026 5.7E-07 59.0 17.6 232 101-354 43-285 (541)
54 PRK11375 allantoin permease; P 97.0 0.22 4.9E-06 52.3 23.8 50 168-217 89-138 (484)
55 KOG1286 Amino acid transporter 96.7 0.023 4.9E-07 60.5 12.9 245 101-356 29-285 (554)
56 TIGR03813 put_Glu_GABA_T putat 96.5 0.23 5.1E-06 51.7 19.2 48 306-358 202-249 (474)
57 TIGR02358 thia_cytX probable h 95.8 2 4.4E-05 43.7 21.4 226 106-365 7-234 (386)
58 TIGR00835 agcS amino acid carr 95.3 0.45 9.8E-06 49.0 14.5 84 102-189 45-138 (425)
59 PRK09442 panF sodium/panthothe 94.9 5.2 0.00011 41.9 21.5 146 100-259 39-188 (483)
60 COG0591 PutP Na+/proline sympo 94.5 6.8 0.00015 41.3 21.2 115 92-211 30-148 (493)
61 PF02554 CstA: Carbon starvati 93.9 2.2 4.9E-05 43.0 15.0 100 104-210 52-155 (376)
62 KOG1289 Amino acid transporter 93.1 14 0.0003 39.2 21.3 75 297-376 251-326 (550)
63 TIGR02119 panF sodium/pantothe 92.6 15 0.00032 38.3 21.9 146 99-259 37-187 (471)
64 TIGR00813 sss transporter, SSS 92.2 15 0.00032 37.4 19.9 108 102-213 3-111 (407)
65 PF02133 Transp_cyt_pur: Perme 91.3 1.8 3.9E-05 44.6 11.0 111 101-216 6-118 (440)
66 PRK11017 codB cytosine permeas 91.2 19 0.00042 36.8 20.2 44 168-212 71-114 (404)
67 COG1457 CodB Purine-cytosine p 89.7 28 0.00061 36.2 18.9 180 170-374 83-268 (442)
68 PRK15015 carbon starvation pro 89.4 5.3 0.00011 43.2 12.5 80 109-194 88-171 (701)
69 PRK12488 acetate permease; Pro 87.3 45 0.00097 35.7 22.8 145 99-259 64-210 (549)
70 TIGR03648 Na_symport_lg probab 86.9 47 0.001 35.5 20.8 86 99-188 29-115 (552)
71 TIGR02711 symport_actP cation/ 85.2 57 0.0012 34.9 22.8 82 101-187 66-149 (549)
72 PF00474 SSF: Sodium:solute sy 84.3 42 0.0009 34.0 15.6 142 101-257 5-148 (406)
73 TIGR00796 livcs branched-chain 82.9 5.6 0.00012 40.5 8.4 76 169-256 256-331 (378)
74 PF05525 Branch_AA_trans: Bran 80.3 9.1 0.0002 39.6 8.9 86 169-268 262-347 (427)
75 TIGR00796 livcs branched-chain 78.1 79 0.0017 32.2 14.8 71 112-190 3-76 (378)
76 COG1966 CstA Carbon starvation 78.0 14 0.0003 39.2 9.4 80 104-189 52-135 (575)
77 PRK09395 actP acetate permease 74.9 1.2E+02 0.0027 32.3 23.5 81 101-186 68-150 (551)
78 COG1953 FUI1 Cytosine/uracil/t 66.5 1.8E+02 0.0039 30.8 22.8 31 350-380 291-324 (497)
79 KOG2083 Na+/K+ symporter [Inor 63.4 13 0.00028 39.7 5.4 90 123-217 51-143 (643)
80 TIGR02121 Na_Pro_sym sodium/pr 62.1 2.1E+02 0.0045 30.0 19.7 81 100-181 34-117 (487)
81 COG1114 BrnQ Branched-chain am 61.6 1.1E+02 0.0024 31.6 11.4 78 169-258 264-341 (431)
82 PF02468 PsbN: Photosystem II 59.3 11 0.00023 26.0 2.6 36 339-374 4-39 (43)
83 KOG2466 Uridine permease/thiam 56.4 2.2E+02 0.0049 30.1 12.7 56 314-373 271-331 (572)
84 COG4147 DhlC Predicted symport 55.4 2.8E+02 0.006 29.3 14.9 177 168-361 104-294 (529)
85 PRK13183 psbN photosystem II r 55.1 11 0.00023 26.3 2.1 39 336-374 4-42 (46)
86 PF01235 Na_Ala_symp: Sodium:a 52.9 2.8E+02 0.0061 28.7 14.4 48 102-150 17-65 (416)
87 CHL00020 psbN photosystem II p 52.0 10 0.00022 26.0 1.6 36 338-373 3-38 (43)
88 PRK15433 branched-chain amino 49.2 1.4E+02 0.003 31.2 10.0 63 170-244 267-329 (439)
89 PRK09950 putative transporter; 48.6 2.3E+02 0.005 30.1 11.8 50 166-216 165-218 (506)
90 PF00209 SNF: Sodium:neurotran 46.2 3.2E+02 0.0069 28.9 12.7 29 105-133 6-35 (523)
91 PRK15419 proline:sodium sympor 45.8 3.8E+02 0.0083 28.1 22.1 82 98-181 36-121 (502)
92 PF12046 DUF3529: Protein of u 43.5 43 0.00092 30.2 4.7 68 68-135 41-111 (173)
93 TIGR00842 bcct choline/carniti 41.6 2E+02 0.0043 30.1 10.0 49 166-215 118-170 (453)
94 PRK09928 choline transport pro 41.3 3.2E+02 0.0069 30.2 11.7 36 168-203 174-213 (679)
95 COG0733 Na+-dependent transpor 39.7 4.6E+02 0.01 27.3 13.2 104 104-217 9-119 (439)
96 PF11085 YqhR: Conserved membr 36.8 98 0.0021 27.9 5.8 34 229-262 106-139 (173)
97 KOG2082 K+/Cl- cotransporter K 36.6 90 0.0019 34.7 6.5 160 102-265 113-285 (1075)
98 PRK03356 L-carnitine/gamma-but 35.2 4.2E+02 0.009 28.2 11.2 48 168-216 169-221 (504)
99 PHA02764 hypothetical protein; 35.1 1.3E+02 0.0027 30.2 6.8 25 102-127 12-37 (399)
100 COG1914 MntH Mn2+ and Fe2+ tra 34.6 5.4E+02 0.012 26.6 13.4 44 169-213 78-121 (416)
101 TIGR00909 2A0306 amino acid tr 33.9 4.6E+02 0.0099 26.5 11.3 44 169-213 265-308 (429)
102 PRK10484 putative transporter; 33.4 6E+02 0.013 26.8 22.9 85 99-188 35-121 (523)
103 PF01566 Nramp: Natural resist 32.3 5.1E+02 0.011 25.7 17.6 76 169-256 43-120 (358)
104 COG5038 Ca2+-dependent lipid-b 31.1 2.5E+02 0.0055 32.7 9.1 29 6-36 40-68 (1227)
105 PHA02680 ORF090 IMV phosphoryl 30.7 1.4E+02 0.003 23.8 5.1 59 303-368 16-74 (91)
106 PF05915 DUF872: Eukaryotic pr 30.6 1.3E+02 0.0027 25.3 5.3 24 105-128 40-63 (115)
107 PRK09928 choline transport pro 27.5 5.1E+02 0.011 28.6 10.6 64 198-261 418-485 (679)
108 PF06930 DUF1282: Protein of u 24.6 1.7E+02 0.0038 25.8 5.5 38 90-127 4-41 (170)
109 PF05767 Pox_A14: Poxvirus vir 23.9 1.7E+02 0.0037 23.5 4.5 59 302-367 15-73 (92)
110 KOG1288 Amino acid transporter 23.9 1.8E+02 0.004 32.1 6.2 27 329-356 321-347 (945)
111 cd08766 Cyt_b561_ACYB-1_like P 23.6 1.9E+02 0.0041 25.3 5.3 54 336-391 39-93 (144)
112 PF02028 BCCT: BCCT family tra 22.8 4.3E+02 0.0093 27.9 8.8 135 134-272 341-476 (485)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-45 Score=371.31 Aligned_cols=287 Identities=35% Similarity=0.530 Sum_probs=244.5
Q ss_pred CCCCCcccccccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhh---cCCCc
Q 015344 90 NPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA---VPGKR 166 (408)
Q Consensus 90 ~~~d~~~~~~~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~---~~g~r 166 (408)
...|+|++.+++|++|+++++||.++.++|.|+|+||||++++||+.|++++++++++++||..+|.+|.+. ..++|
T Consensus 24 ~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r 103 (437)
T KOG1303|consen 24 SDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKR 103 (437)
T ss_pred cccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 456889999999999999999999999999999999999999999999999999999999999999988643 46778
Q ss_pred cCCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccC
Q 015344 167 YNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL 246 (408)
Q Consensus 167 ~~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l 246 (408)
..+|.|+++++||+++..++..++.+. ++|+|++|++..+|+++.+++..+.+.+ .++...|+++++++.++++++
T Consensus 104 ~~~Y~dl~~~afG~~~~~iv~~~~~~~-~fg~~v~y~il~~~~L~~~~~~~~~~~~---~l~~~~f~iif~~i~~~~s~l 179 (437)
T KOG1303|consen 104 RYRYPDLGQAAFGPKGRLLVSVLQYLE-LFGICVVYIILAGDNLKALFPIVSLNDN---SLDKQYFIIIFGLIVLPLSQL 179 (437)
T ss_pred CCChHHHHHHHhCCCceEeeeHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCccc---cccceehhhhHHHHHHHHHHC
Confidence 889999999999998744555555444 5999999999999999999988775421 444678999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCC
Q 015344 247 PNLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPS 326 (408)
Q Consensus 247 ~~l~~L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~ 326 (408)
||+++++++|..++++++.|+++.+++++.+|...+....+..+..+. ...++++|+++|+|.||.++||||++|
T Consensus 180 p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~---~~~f~a~g~iaFaf~gH~v~peIq~tM-- 254 (437)
T KOG1303|consen 180 PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTI---PTVFTALGIIAFAYGGHAVLPEIQHTM-- 254 (437)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCC---cchhhhhhheeeeecCCeeeeehHhhc--
Confidence 999999999999999999999988888887775542221111111111 111899999999999999999999999
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHHHHHHHHH
Q 015344 327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKKKELLDVL 389 (408)
Q Consensus 327 ~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~~~ll~~~ 389 (408)
|+|++ |+|++.+++.+++++|+.++++|||+|||++++ ++.|+..|.|+...+|++.++
T Consensus 255 --k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~ 314 (437)
T KOG1303|consen 255 --KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVL 314 (437)
T ss_pred --CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHH
Confidence 45766 779999999999999999999999999999999 999998888999888876444
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=6.9e-38 Score=324.13 Aligned_cols=290 Identities=17% Similarity=0.175 Sum_probs=211.4
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCcc
Q 015344 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGER 181 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~ 181 (408)
.+++..+++||++|+++|+|+|+||+||+++||+.|+++++++++++.||+++|.++++. .+ ..+|+|+++++|||+
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~~ 134 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGPW 134 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCHH
Confidence 478999999999999999999999999999999999999999999999999999999864 23 459999999999997
Q ss_pred chhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCC-CCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Q 015344 182 LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGP-LCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (408)
Q Consensus 182 ~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~-~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~ 260 (408)
++++++++. ...++|+|++|+++.+|.++.+++..... .......++..+.+++.++++|++++|++++|+++|.+++
T Consensus 135 g~~~v~~~~-~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 135 GSYYVAATR-AFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence 666666544 45579999999999999999876531110 0000001122233445566788999999999999999998
Q ss_pred HHHHHHHHhheeeeeecCCCCCC---CCCCCC-CCCCcCc-HHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 015344 261 ITAVTYSTMVWVLSVSQPRPPNI---SYEPLS-SASPAAT-VFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP 335 (408)
Q Consensus 261 ~~~l~y~~ii~~~~i~~g~~~~~---~~~~~~-~~~~~~~-~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~ 335 (408)
++.+.+.+++++.++.++.+++. ++.+.. .....++ ..+++.++|+++|||.||.+++++++|| |+|+.++
T Consensus 214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~ 289 (467)
T PTZ00206 214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGK 289 (467)
T ss_pred HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhH
Confidence 66443333332333334433221 111100 0000111 2368899999999999999999999999 5677777
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCC--C-ch-hHHHHHHHH-HHHHH---Hhhhcccc
Q 015344 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAH--N-KF-TIGKKKELL-DVLAY---VEKCRKSQ 399 (408)
Q Consensus 336 m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~--~-~~-~~~~~~~ll-~~~~~---~~~~~~~~ 399 (408)
|.+++..++.++.++|..+|++||++||+++++ +++|++ + +. .++.....+ .+++| +++||+++
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i 362 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNAL 362 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 889999999999999999999999999999999 888874 2 21 222222222 22233 67888865
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=305.56 Aligned_cols=273 Identities=19% Similarity=0.260 Sum_probs=219.3
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhc---CCCccCCHHHHHHHH
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAV---PGKRYNRYVELAQAA 177 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~---~g~r~~sY~el~~~~ 177 (408)
++..|..++..|++|+++|+|+|++|+||+++||+.|.+..++.+.++.||+++|++|.+.. .+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999997532 122345888888766
Q ss_pred h----------CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCC
Q 015344 178 F----------GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLP 247 (408)
Q Consensus 178 ~----------G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~ 247 (408)
+ |++ +|.+..+..+..|+|+|++|+++++++++++.+.. ....++.+.|+.+..+..+++.++|
T Consensus 124 ~~~~~~~~r~~g~~-~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~-----~~~~~s~~~~i~~~~~~~lll~~Ir 197 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPA-ARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH-----SPGVLSVRLYILIQLPPLLLLNLIR 197 (449)
T ss_pred HcCCcHHHHhhcHH-HHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc-----CCCCccHHHHHHHHHHHHHHHHHHH
Confidence 5 333 34455556677799999999999999999998731 2245667888888777888899999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCC
Q 015344 248 NLNSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST 327 (408)
Q Consensus 248 ~l~~L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~ 327 (408)
+++.|+.+|++|.+..+.-..++....+ +. .++. .+.....++.+++.++|+.+|||+|+++++|++++|
T Consensus 198 ~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~-~~-~~~~-----~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M--- 267 (449)
T KOG1304|consen 198 NLKILSPFSLFANVFILVGLAIIMYYLV-QD-LPPT-----SDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM--- 267 (449)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHH-hc-cCCc-----cccccccchhhhHHHHHHHHHHhccceEEEehhhcc---
Confidence 9999999999998876544333322222 21 1221 112223357889999999999999999999999999
Q ss_pred CCCCCccc-cchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHHHHHHHHHHH
Q 015344 328 FKHPAHVP-MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKKKELLDVLAY 391 (408)
Q Consensus 328 ~~~P~~~~-m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~~~ll~~~~~ 391 (408)
|||++++ -.+++..+|.+++++|..+|++||++||+++++ |..|+++ .|+++.++++.+++.
T Consensus 268 -k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I 331 (449)
T KOG1304|consen 268 -KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAI 331 (449)
T ss_pred -cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHH
Confidence 6899864 237888999999999999999999999999999 9999998 899999998755543
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=4.2e-38 Score=319.19 Aligned_cols=290 Identities=25% Similarity=0.386 Sum_probs=225.7
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcC-CCccCCHHHHHHHHhCc
Q 015344 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVP-GKRYNRYVELAQAAFGE 180 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~-g~r~~sY~el~~~~~G~ 180 (408)
||+|++++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.++|+++++..+ +++..+|+|++++++|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999987532 34567999999999999
Q ss_pred cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Q 015344 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (408)
Q Consensus 181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~ 260 (408)
++++++..+..+. ++|.|++|+++.+|.+..++....++ ...++..|.++..+++++++++|++++++++|.+|.
T Consensus 81 ~~~~~~~~~~~~~-~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~ 155 (409)
T PF01490_consen 81 KGKWFVDICIFIY-LFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGL 155 (409)
T ss_pred cccccccchheec-cccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhh
Confidence 9877777655554 59999999999999999987654322 233456677777778888999999999999999998
Q ss_pred HHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc-cccchh
Q 015344 261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH-VPMWRG 339 (408)
Q Consensus 261 ~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~-~~m~k~ 339 (408)
++.+.++++.+.........++.+.. ..+.....++.+++.++|+++|||.||.+++++++|| |+|++ ++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~ 230 (409)
T PF01490_consen 156 FSIFYFIVIVVIYIISYGPGEPSGVP-SPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKV 230 (409)
T ss_pred hccceeeeeecceeeeeecccccccc-cccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCcccccccee
Confidence 76543222222222222222221111 0111123456789999999999999999999999999 56777 567899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHHHHHHHHH----HH---Hhhhcccccc
Q 015344 340 AKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKKKELLDVL----AY---VEKCRKSQLQ 401 (408)
Q Consensus 340 v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~~~ll~~~----~~---~~~~~~~~~~ 401 (408)
+..++.+++++|+.+|++||++||+++++ +++|+++..+....++++..+ ++ ++++|+++.+
T Consensus 231 ~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 300 (409)
T PF01490_consen 231 LSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLEN 300 (409)
T ss_pred eeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhh
Confidence 99999999999999999999999999999 999998766566656643222 22 5555555443
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=6.1e-33 Score=286.94 Aligned_cols=260 Identities=17% Similarity=0.217 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhh----c--CCCcc----CCHH
Q 015344 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA----V--PGKRY----NRYV 171 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~----~--~g~r~----~sY~ 171 (408)
.+++..++.+|++|..+|.|+|+||+||+++||+.|+++++++++++.||.++|.+|+.+ . ++.+. .+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999987422 1 11111 2689
Q ss_pred HHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchh
Q 015344 172 ELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNS 251 (408)
Q Consensus 172 el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~ 251 (408)
|+++..+||+|+++...+..+++ ++.|+.|++..++++..+ . ..++.+.|+++++++++++.++|++++
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l-~~~~v~~li~~~~~~~~l----~------~~~~~~~~~~i~~~v~~~~~~i~sl~~ 192 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFL-LFGSVIQLIACASNIYYI----N------DNLDKRTWTYIFGACCATTVFIPSFHN 192 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhh-HHHHHHHHHHHhhhhhhh----C------CCcCCCeEEeehHHHHHHHHHccCHHH
Confidence 99999999988887766665554 888999999877766644 1 133467788888888888999999999
Q ss_pred hHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCC
Q 015344 252 IAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP 331 (408)
Q Consensus 252 L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P 331 (408)
++++|.+|+++++.+.+.+++.++.++..++.+++ ...++..++.++++++|+|+||.++|+|+++| |+|
T Consensus 193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~------~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P 262 (473)
T PLN03074 193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS------GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKP 262 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC------CchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cCh
Confidence 99999999887654333333333334443433221 12356678888999999999999999999999 689
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh---hhcCCCCchhHHHHHHH
Q 015344 332 AHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST---LNAKAHNKFTIGKKKEL 385 (408)
Q Consensus 332 ~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~---il~n~~~~~~~~~~~~l 385 (408)
++++ ++...++.+++++|+.+|+.||++|||++++ .++|++.+.| .+.+++
T Consensus 263 ~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~ 316 (473)
T PLN03074 263 QKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVI 316 (473)
T ss_pred hccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHH
Confidence 9876 7778888889999999999999999999864 5777764444 333443
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=255.80 Aligned_cols=261 Identities=22% Similarity=0.292 Sum_probs=201.2
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~ 180 (408)
+++.+.+.+++|++|+++|+|+|++|+||++.|.+.|+++++++++++.++++++.+|.+.. +++ +|+++++.++|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~~--ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GER--TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CCC--CHHHHHHHHcCC
Confidence 35678899999999999999999999999999999999999999999999999999998753 555 999999999999
Q ss_pred cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCC--CCcchH-HHHHHHHHHHHhccCCCchhhHHHHH
Q 015344 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSN--PLTTVE-WYLVFTSLCIVLSQLPNLNSIAGLSL 257 (408)
Q Consensus 181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~--~l~~~~-~~ii~~~v~i~L~~l~~l~~L~~vS~ 257 (408)
.+ ++.......+..+| |++|+++.+|.+..+......+ +..+ ..+++. |.++..++..+|+..|+++++++.|.
T Consensus 80 ~g-~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~-~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 80 LG-KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLD-EEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSA 156 (411)
T ss_pred Cc-eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccc-cccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 75 44332222222355 6999999999999766543221 1101 112222 56666677788998999999999999
Q ss_pred HHHHHHHHHHHhheeeeeecCC-CCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344 258 IGAITAVTYSTMVWVLSVSQPR-PPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM 336 (408)
Q Consensus 258 i~~~~~l~y~~ii~~~~i~~g~-~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m 336 (408)
++.++.+.+..+.+...+.... .+...+. ......+++++.++++++|||.||.++.++++|| |||++++|
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i 228 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYL----VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKI 228 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccc----cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHH
Confidence 9987655444333322222111 1222222 1112223689999999999999999999999999 78999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCC
Q 015344 337 WRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHN 375 (408)
Q Consensus 337 ~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~ 375 (408)
.++...+...++++|+.+|.+||+.||+.+++ ++.+++.
T Consensus 229 ~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~ 268 (411)
T KOG1305|consen 229 QRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDS 268 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCc
Confidence 99999999999999999999999999999999 9888874
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.95 E-value=5.8e-29 Score=237.96 Aligned_cols=285 Identities=19% Similarity=0.257 Sum_probs=223.0
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhc--CCC---ccCCHHHHHH
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAV--PGK---RYNRYVELAQ 175 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~--~g~---r~~sY~el~~ 175 (408)
+.|.+.++|.+|+.|++-|.=+++||+|..+.||+ ++..++.++.+|+||..+|++|..+. +|. ..++|.++|.
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 45788999999999999999999999999999986 99999999999999999999997532 222 2369999999
Q ss_pred HHhCccch-hhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHH
Q 015344 176 AAFGERLG-VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAG 254 (408)
Q Consensus 176 ~~~G~~~g-~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~ 254 (408)
.+++++.| |++...+.+-+ +.+|+.|+++.+|.|..-+. ....+.+.|+++.++++++.+++++++-.+.
T Consensus 193 ~C~~P~lGgr~V~~AQliEL-lmTCIlYvVv~gdLl~~~fP--------~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 193 FCYKPGLGGRWVLAAQLIEL-LMTCILYVVVAGDLLQSCFP--------GLSVDKASWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred HhcCCCcchheeeHHHHHHH-HHHHHhhhheechhhhccCC--------CCCccccchhhhhhHHHhhhHHHHHHHHHHH
Confidence 99998755 88888777776 89999999999998775322 1244578899999988888889999999999
Q ss_pred HHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 015344 255 LSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV 334 (408)
Q Consensus 255 vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~ 334 (408)
+|++..++-+..-++++.+|+.+-+ +-.|+.++ -..+...++..+|+++|+|..|..+|.+...| ++|+++
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~~--dW~wskv~---Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~F 334 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFVS--DWSWSKVT---FSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQF 334 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hccceeEE---EEEEcccCceEEEEEEEeeeceeecccccccc----CChhHh
Confidence 9988877766555555555544311 11111110 11234567888999999999999999999999 689998
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHH------HHH----HHHHHHHhhhcccccccC
Q 015344 335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKK------KEL----LDVLAYVEKCRKSQLQRS 403 (408)
Q Consensus 335 ~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~------~~l----l~~~~~~~~~~~~~~~~~ 403 (408)
. -.+.++=+..+++-..+|.+||++||+++++ |.+|+++..+-+.. ++| |.+++++|.-++++||+.
T Consensus 335 n--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~ 412 (524)
T KOG4303|consen 335 N--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGY 412 (524)
T ss_pred e--eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCC
Confidence 7 2344555556777889999999999999999 99999975433332 333 367788999999999999
Q ss_pred Ccc
Q 015344 404 PRV 406 (408)
Q Consensus 404 ~~~ 406 (408)
||.
T Consensus 413 p~t 415 (524)
T KOG4303|consen 413 PQT 415 (524)
T ss_pred CCC
Confidence 874
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.94 E-value=4e-25 Score=225.52 Aligned_cols=262 Identities=20% Similarity=0.218 Sum_probs=203.0
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~ 180 (408)
+.+.+.+++++++++++||+|+|++|++++..|++++++++++.+.+++++.++++|+.++.+..+ .+|.+++++.+||
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~G~ 84 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDYLGK 84 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHhCc
Confidence 346778999999999999999999999999999999999999999999999999999987653322 5999999999999
Q ss_pred cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Q 015344 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (408)
Q Consensus 181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~ 260 (408)
+|+.++.. .+...++|.+++|++..++.+..+++..... .+..+..+.+++.+++..+++.++...++..|++..
T Consensus 85 ~~~~li~~-s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~----~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 85 KGGILIGL-SYFFALYGLLVAYIVGIGNLLASFLGNQFGL----NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred chHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHhhccc----CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 87776665 4555679999999999999999998764321 114455566667666777888999999999998887
Q ss_pred HHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhh
Q 015344 261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGA 340 (408)
Q Consensus 261 ~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v 340 (408)
...+..+++...... .-.... .. ..+......+..+..++|+++|||+||+++++++++|+ +++++..+|+.
T Consensus 160 ~~v~~~~~l~~~~~~-~~~~~~--l~-~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~----~~~~~~~~k~~ 231 (415)
T COG0814 160 GKVIYLVLLVVYLIP-HWNPAN--LF-ALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMR----KNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHhc-ccCHHH--Hh-cccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhc----cchhHHHHHHH
Confidence 654333222211111 100000 00 00000124567899999999999999999999999994 45544467999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCc
Q 015344 341 KVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNK 376 (408)
Q Consensus 341 ~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~ 376 (408)
..+..+..++|+.++.++|..||+++++ ++.+.++.
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~ 268 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQN 268 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCch
Confidence 9999999999999999999999999999 88777643
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.75 E-value=2.4e-16 Score=159.75 Aligned_cols=236 Identities=10% Similarity=0.080 Sum_probs=161.7
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 99 TESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 99 ~~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
+++++++.+++++.+..+.||+|+|+||.+.++.|+.+++++++++++...||..+++|...+.+ +..++..++++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999875432 3458999999999
Q ss_pred CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHHHH
Q 015344 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLS 256 (408)
Q Consensus 179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~vS 256 (408)
||+| +++..+..+.+.++.+++|+--+|+.+.+.++.. + .+.+...-.++|.++.-.+.+ .+..+++..+-
T Consensus 84 G~~g-~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~-----~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l 156 (414)
T PRK10483 84 GKGW-NVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S-----LNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIV 156 (414)
T ss_pred ChHH-HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C-----CCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9974 4555555556669999999999999998887642 1 112222222233222212221 34445555444
Q ss_pred HHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344 257 LIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM 336 (408)
Q Consensus 257 ~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m 336 (408)
+.+.+.++...+.. . +.+-+.+.. .+ .. ......+..++.+++++++||..|+++|++.+.++ ++++ +.
T Consensus 157 ~~~~i~~f~~~~~~-l--~~~i~~~~L-~~-~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--ki 225 (414)
T PRK10483 157 LGAKVITFFLTFGS-L--LGHVQPATL-FN-VA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TI 225 (414)
T ss_pred HHHHHHHHHHHHHH-H--HhhcCHHHH-hc-cc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HH
Confidence 44443332211111 1 111111100 00 00 01112244678999999999999999999999995 3344 46
Q ss_pred chhhHHHHHHHHHHHHHH
Q 015344 337 WRGAKVAYLFIAMCLFPV 354 (408)
Q Consensus 337 ~k~v~~s~~i~~~~Y~~v 354 (408)
+|++.++..+..++|+..
T Consensus 226 r~~I~iGs~Iplv~yl~W 243 (414)
T PRK10483 226 VKCLVYGTLMALALYTIW 243 (414)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999999875
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.72 E-value=1.5e-15 Score=154.30 Aligned_cols=231 Identities=17% Similarity=0.234 Sum_probs=155.7
Q ss_pred CCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccc
Q 015344 103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL 182 (408)
Q Consensus 103 ~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~ 182 (408)
+.+.+.+++.+..+.||+|+|+||++.+..|+.++++++++++.+.+||..++.|+..+.+ +..+|.+++++.+||++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~--~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP--EGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHhChHH
Confidence 5678899999999999999999999999999999999999999999999999999875432 24699999999999986
Q ss_pred hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHHHHHHHH
Q 015344 183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLSLIGA 260 (408)
Q Consensus 183 g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~vS~i~~ 260 (408)
+.+..+ .+..+.++.+++|+.-+++.+++++....+ .+.+...-.+++.++.-.+.. .+-.++...+-....
T Consensus 80 ~~~~~~-~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-----~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~ 153 (394)
T PF03222_consen 80 GIVIGI-SYLFLLYALLVAYISGGGSILSSLLGNQLG-----TDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGM 153 (394)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHccHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 665554 444455999999999999999998775432 111122112222221111111 112222222222222
Q ss_pred HHHHHHHHhheeeeeecCCCCCCCCCCCCC-CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchh
Q 015344 261 ITAVTYSTMVWVLSVSQPRPPNISYEPLSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRG 339 (408)
Q Consensus 261 ~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~-~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~ 339 (408)
+.++. .+.. ..+ ++.+.+.... .....++..++.+++++++||..|+++|++.+.++ ++++ +.+|+
T Consensus 154 i~~~~--~l~~-~~~-----p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~--k~~~a 220 (394)
T PF03222_consen 154 IISFI--ILVV-YLI-----PHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPK--KIRKA 220 (394)
T ss_pred HHHHH--HHHH-HHh-----hhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHH--HHHHH
Confidence 22211 1111 111 1111110111 11234677889999999999999999999999995 2333 35699
Q ss_pred hHHHHHHHHHHHHHH
Q 015344 340 AKVAYLFIAMCLFPV 354 (408)
Q Consensus 340 v~~s~~i~~~~Y~~v 354 (408)
+.++..+..++|+..
T Consensus 221 i~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 221 IIIGSLIPLVMYLLW 235 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888888875
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.70 E-value=3.4e-15 Score=151.28 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=155.8
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCcc
Q 015344 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGER 181 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~ 181 (408)
+|.+.+.+++.+..+.||+|+|+||.+-++.|+.+++++++++++...||..+++|...+.+ +..++..++++.+||+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~ 84 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNT 84 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChH
Confidence 35588889999999999999999999999999999999999999999999999999876442 3468999999999997
Q ss_pred chhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHHHHHH
Q 015344 182 LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSLIG 259 (408)
Q Consensus 182 ~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~vS~i~ 259 (408)
++++..+....+.++.+++|+--+|+.+.+.++...+ .+.+...-.++|..+.-.+. -.+..+++..+-+.+
T Consensus 85 -g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~-----~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~ 158 (415)
T PRK09664 85 -WNIISGITVAFVLYILTYAYISANGAIISETISMNLG-----YHANPRIVGICTAIFVASVLWISSLAASRITSLFLGL 158 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 4555555555566999999999999999988754211 11112211223322211111 134445555444444
Q ss_pred HHHHHHHHHhheeeeeecCCCCCCCCCCCCCCC----CcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccc
Q 015344 260 AITAVTYSTMVWVLSVSQPRPPNISYEPLSSAS----PAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVP 335 (408)
Q Consensus 260 ~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~----~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~ 335 (408)
.+.++...+... .++++.+-..+.. ....+..++.++|++++||+.|+++|++.+.++ +++++
T Consensus 159 ~ii~f~~~~~~l--------~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~-- 225 (415)
T PRK09664 159 KIISFVIVFGSF--------FFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK-- 225 (415)
T ss_pred HHHHHHHHHHHH--------hhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--
Confidence 333222111111 1111110000000 000133577899999999999999999999985 34444
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 015344 336 MWRGAKVAYLFIAMCLFPV 354 (408)
Q Consensus 336 m~k~v~~s~~i~~~~Y~~v 354 (408)
.+|++..+..+..++|+..
T Consensus 226 ~~kaIl~Gs~IpLviY~~W 244 (415)
T PRK09664 226 LIKSVVFGSLLALVIYLFW 244 (415)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3488888888888888654
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.67 E-value=1e-15 Score=154.58 Aligned_cols=237 Identities=13% Similarity=0.105 Sum_probs=160.9
Q ss_pred HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHH
Q 015344 109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLAL 188 (408)
Q Consensus 109 a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~ 188 (408)
+++.++++++|+|+|++|.++++.|+..+++++++.++++.++..++.|+..+.++ ..+|.+++++++||+++.+..+
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~--~~~~~~~~~~~~G~~~g~~~~~ 79 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG--GASFNTIAKDLLGKTGNIIAGL 79 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999998765433 3589999999999987777665
Q ss_pred HHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHH
Q 015344 189 FPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYST 268 (408)
Q Consensus 189 ~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~~~l~y~~ 268 (408)
... ..++..+++|.+..++.+..++...... ......+.+++.+++..+ ..+..+..++++.+.....+...+
T Consensus 80 ~~~-~~~~~~~~ay~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~ 152 (381)
T TIGR00837 80 SLL-FVLYILTYAYISGGGSILSRLIGEYFGF-----PWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFA 152 (381)
T ss_pred HHH-HHHHHHHHHHHHccHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHH
Confidence 433 3458899999999999988877643211 112222222232222222 244556666666555444333222
Q ss_pred hheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHH
Q 015344 269 MVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIA 348 (408)
Q Consensus 269 ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~ 348 (408)
+.++..+.+.+.++ +.|. ......+.++..++++..++|.+|.+++.+.++++ ++ +|++.|++..+..+++
T Consensus 153 ~~ii~~~~~~~~~~--~~~~--~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~----~~-~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 153 LVFSGLLPHVKGDL--LLDV--ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYD----GN-VKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHhhccHHH--HhcC--ccccccHHHHHHHHHHHHHHHHcccccHHHHHHhc----cC-HHHHHHHHHHHHHHHH
Confidence 22111122211111 1111 00112456788999999999999999999999994 34 4557799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 015344 349 MCLFPVAIGGFWAYG 363 (408)
Q Consensus 349 ~~Y~~vgi~GYlaFG 363 (408)
++|+.+.+.....++
T Consensus 224 ~lY~l~~~~~~g~~~ 238 (381)
T TIGR00837 224 VLYILWQLATMGNLP 238 (381)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999988766655543
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.64 E-value=2.4e-14 Score=145.44 Aligned_cols=237 Identities=15% Similarity=0.121 Sum_probs=158.2
Q ss_pred CcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccch
Q 015344 104 GNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG 183 (408)
Q Consensus 104 ~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g 183 (408)
++.+++++.+..+.||+|+|+||.+.+..|++++++++++++.+..|+.+++.|+..+. ++..++.+++++.+||+++
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~--~~~~~~~~~a~~~LG~~g~ 80 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV--PADTGLGTLAKRYLGRYGQ 80 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHhChHHH
Confidence 47789999999999999999999999999999999999999999999999999975432 2345899999999999866
Q ss_pred hhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccC--CCchhhHHHHHHHHH
Q 015344 184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQL--PNLNSIAGLSLIGAI 261 (408)
Q Consensus 184 ~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l--~~l~~L~~vS~i~~~ 261 (408)
.+..+ .+..+.+..+++|+.-+|+.+.+.+..+... +++...+.++|.++.-..... +-.+++..+-..+.+
T Consensus 81 ~i~~~-~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-----~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~i 154 (403)
T PRK15132 81 WLTGF-SMMFLMYALTAAYISGAGELLASSISDWTGI-----SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKI 154 (403)
T ss_pred HHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-----CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 65554 4455559999999999999988877653321 223344444444332222222 223333333222222
Q ss_pred HHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhH
Q 015344 262 TAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAK 341 (408)
Q Consensus 262 ~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~ 341 (408)
.++. +.... .+ ++.+.+...+. + .+..-++.+++++++||..|+++|++.+.++ +++ ++.+|++.
T Consensus 155 i~~~--~~~~~-l~-----p~~~~~~L~~~-~-~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~--~~~~k~i~ 219 (403)
T PRK15132 155 IFLV--VMLAL-MM-----PHIHKVNLLTL-P-LQQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNI--RKLRWVFI 219 (403)
T ss_pred HHHH--HHHHH-HH-----HhcCHHHHhcC-C-ccccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCH--HHHHHHHH
Confidence 2221 11110 01 11111101000 0 0111378999999999999999999999995 233 34569999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 015344 342 VAYLFIAMCLFPVAIGGFWAYG 363 (408)
Q Consensus 342 ~s~~i~~~~Y~~vgi~GYlaFG 363 (408)
++..+..++|+..-......-+
T Consensus 220 ~Gs~i~li~yl~W~~~~lg~l~ 241 (403)
T PRK15132 220 IGSAIPLVAYIFWQLATLGSID 241 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999877555544433
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.46 E-value=4.8e-12 Score=128.79 Aligned_cols=244 Identities=14% Similarity=0.132 Sum_probs=151.4
Q ss_pred HHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHHHH
Q 015344 111 FHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFP 190 (408)
Q Consensus 111 f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~~~ 190 (408)
+.+..+.||+|+|+||......|.++.++++++++.+.+|+...|.|..... .+...+|.+++++.|||+|+.+..+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~-~~~~~~i~~v~~~~lG~~g~~i~~ilY 104 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG-SNPSGNITETVEEHFGKTGGVVITFLY 104 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCHHHHHHHHcChhHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999875432 133468999999999999888776644
Q ss_pred HHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHHHHHHHHHHHHHHHH
Q 015344 191 TVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLSLIGAITAVTYST 268 (408)
Q Consensus 191 ~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~vS~i~~~~~l~y~~ 268 (408)
.+. .+..+.+|.....+.+++++....+. ...++....+++.+++..... -+-+.++..+-+...+.++....
T Consensus 105 ff~-ly~ll~aY~~~itn~l~sfl~~ql~~----~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~ 179 (443)
T PRK13629 105 FFA-ICPLLWIYGVTITNTFMTFWENQLGF----APLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLIS 179 (443)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhcCc----CCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 48889999988888887765433210 122222222232222211111 12233333333333222221111
Q ss_pred hheeeeeecCCCCCCCCCCC---CCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC---CCC--ccccchhh
Q 015344 269 MVWVLSVSQPRPPNISYEPL---SSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK---HPA--HVPMWRGA 340 (408)
Q Consensus 269 ii~~~~i~~g~~~~~~~~~~---~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~---~P~--~~~m~k~v 340 (408)
+. + +-+=..++....+. ...........+..++|+++|||..|+.++++...+|+.-+ +++ +++.+|++
T Consensus 180 ~~--L-iP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii 256 (443)
T PRK13629 180 LS--L-IPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQII 256 (443)
T ss_pred HH--H-HHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHH
Confidence 11 0 10000001100000 00000011235788999999999999999999999653211 223 45677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 015344 341 KVAYLFIAMCLFPVAIGGFWAYG 363 (408)
Q Consensus 341 ~~s~~i~~~~Y~~vgi~GYlaFG 363 (408)
.++..+..++|+..-+.....-+
T Consensus 257 ~~gs~i~lv~y~fwv~S~~gsLs 279 (443)
T PRK13629 257 SRASMLMVAVVMFFAFSCLFTLS 279 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999887666655544
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.42 E-value=8.2e-12 Score=126.99 Aligned_cols=244 Identities=12% Similarity=0.096 Sum_probs=153.4
Q ss_pred HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHH
Q 015344 109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLAL 188 (408)
Q Consensus 109 a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~ 188 (408)
=.+.+..+.+|+|+|+||...++.||+..++..++...+.+++..++.|.....+. ...++.|++++.|||++|+++.+
T Consensus 8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G~ii~~ 86 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWGILITL 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHHHHHHH
Confidence 35778889999999999999999999988888888888888888888886432111 13589999999999999998887
Q ss_pred HHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHH-HhccCCCchhhHHHHHHHHHHHHHHH
Q 015344 189 FPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCI-VLSQLPNLNSIAGLSLIGAITAVTYS 267 (408)
Q Consensus 189 ~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i-~L~~l~~l~~L~~vS~i~~~~~l~y~ 267 (408)
...++. +..+.+|....++.+..++...... +. ...+.+.+..+.+ ........+.+.+++-+-....+...
T Consensus 87 lY~~~~-~~i~~aY~~~~~~~~~~fl~~~~~~-----~~-p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l 159 (397)
T TIGR00814 87 LYFFAI-YPILLIYSVAITNDSASFLVNQLGT-----AP-PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLIL 159 (397)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC-----CC-cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 655555 7788999998888888876543211 11 1222221111111 12223355555555533322111111
Q ss_pred HhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC--ccccchhhHHHHH
Q 015344 268 TMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA--HVPMWRGAKVAYL 345 (408)
Q Consensus 268 ~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~--~~~m~k~v~~s~~ 345 (408)
++.....+.+-+.++....| . ....+.++..++++.+|||.+|.+++++....|...++|+ +++.+|++..+..
T Consensus 160 ~~l~~~lip~~~~~~L~~~p---~-~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~ 235 (397)
T TIGR00814 160 VLLSLYLIPHWNGANLTTFP---S-FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASL 235 (397)
T ss_pred HHHHHHHHHHcCHHHHhcCC---c-ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 11111111111111111001 0 1113567899999999999999999999844421112233 4456688999999
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 015344 346 FIAMCLFPVAIGGFWAYGN 364 (408)
Q Consensus 346 i~~~~Y~~vgi~GYlaFG~ 364 (408)
+.+++|+..-+......+.
T Consensus 236 i~~~~y~~~~~s~~~~l~~ 254 (397)
T TIGR00814 236 ILVATVMFFVFSCVLSLSP 254 (397)
T ss_pred HHHHHHHHHHHHHhccCCH
Confidence 9998888877666666653
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.08 E-value=7.5e-09 Score=103.81 Aligned_cols=237 Identities=14% Similarity=0.161 Sum_probs=143.5
Q ss_pred CCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccc
Q 015344 103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL 182 (408)
Q Consensus 103 ~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~ 182 (408)
+-|.+|.++.++..++|+|++.+|...++.+--.+.+..++.+++.....+++.+.....++ .+..|..++++||+.
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~---~~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE---KNFSEILSKYLGKIL 78 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhhHHH
Confidence 56789999999999999999999998776554556677778888888888888887765443 268899999999998
Q ss_pred hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHH-HHHHhccCCCchhhHHHHHHHHH
Q 015344 183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS-LCIVLSQLPNLNSIAGLSLIGAI 261 (408)
Q Consensus 183 g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~-v~i~L~~l~~l~~L~~vS~i~~~ 261 (408)
|+++.+...++. +..+....-..++.+. ....+ ++..|.+.... +.......+.++.+++++.+-..
T Consensus 79 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~-------~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~ 146 (359)
T TIGR00912 79 GRLLSILFILYF-FLIAAYLIRIFADFIK----TYLLP-------RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLI 146 (359)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHhcC-------CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 988776544332 2222222222222222 21111 12233332211 11122234577777777765543
Q ss_pred HHHHH-HHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHH-HHHHHhhccccchHHHHhhCCCCCCCCCccccchh
Q 015344 262 TAVTY-STMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNAL-GIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRG 339 (408)
Q Consensus 262 ~~l~y-~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~al-gii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~ 339 (408)
..+.. .++.......+.+..+ ..|.. ..++.++..+. ....++|.+...+..+..++ ++|++ ..|+
T Consensus 147 ~~i~~~~~il~~~~~~~~~~~~--l~P~~----~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~ 214 (359)
T TIGR00912 147 IFLILFILVLILLAPKLGNIKN--LLPVL----ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKS 214 (359)
T ss_pred HHHHHHHHHHHHHhcccccHHH--ccCcc----ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHH
Confidence 32222 1111111111111111 11221 12334555544 37889998888888888888 34544 5589
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 015344 340 AKVAYLFIAMCLFPVAIGGFWAYGNLV 366 (408)
Q Consensus 340 v~~s~~i~~~~Y~~vgi~GYlaFG~~v 366 (408)
...+..+++++|..+-+.....+|.+.
T Consensus 215 ~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 215 IIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 999999999999988888888887543
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=98.99 E-value=4.7e-08 Score=100.71 Aligned_cols=240 Identities=12% Similarity=0.016 Sum_probs=131.7
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
++|+-+.++.+...+.+++|+|++.+|..+++.|- .+++..++.+++.+.......|.....+. .......+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~--~GG~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK--SGGMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCchHHHHHHHcC
Confidence 46788999999999999999999999998888886 46666777777766666666665432222 2245566779999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSL 257 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~vS~ 257 (408)
++.+.+..+...+.. .-...++.+...+.+..++. . .... ...+.+...+ ++++. -.+..+..+++..
T Consensus 81 ~~~gf~~gw~~~~~~-~~~~~~~a~~~~~y~~~~~~----~--~~~~--~~~~~~~~~~-l~~~~~ln~~g~~~~~~i~~ 150 (438)
T PRK10655 81 KSGNFMANYTYGVSL-LIANVAIAISAVGYGTELFG----A--TLSP--VQICLATIGV-LWLCTVANFGGARITGQISS 150 (438)
T ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc----c--ccch--HHHHHHHHHH-HHHHHHHHHhCHHHHHHHHH
Confidence 988876665432222 11122222222223222221 0 0001 1122211111 11111 1223333344333
Q ss_pred HHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 015344 258 IGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW 337 (408)
Q Consensus 258 i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~ 337 (408)
+.....+.-.+++.+..+......+ +.+.........+.++..++....|+|.|-.....+-+|+ |+|+| ++.
T Consensus 151 i~~~~~l~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP 223 (438)
T PRK10655 151 VTVWGVIIPVVGLSIIGWFWFSPSL--YVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVP 223 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc--ccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-ccc
Confidence 2222111111111111111111111 1110001111123567778889999999999999999999 57865 366
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 015344 338 RGAKVAYLFIAMCLFPVAIGGF 359 (408)
Q Consensus 338 k~v~~s~~i~~~~Y~~vgi~GY 359 (408)
|++..+..++.++|+.......
T Consensus 224 rAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 224 IAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988755433
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=98.90 E-value=1.5e-07 Score=96.63 Aligned_cols=243 Identities=15% Similarity=0.095 Sum_probs=140.8
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFA-FLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa-~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+-+.++.++..++.++|+|++.+|.... ..|. ..++..++.+++.......+.|.....++. ....+..++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~--Gg~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA--GSPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CcceeeHHHHhC
Confidence 467899999999999999999999995544 4454 355556666777766667777765443332 234455678899
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCC---CCCCC--CCcchHHH-HHHHHHHHHhccCCCchhhH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGP---LCSSN--PLTTVEWY-LVFTSLCIVLSQLPNLNSIA 253 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~---~~~~~--~l~~~~~~-ii~~~v~i~L~~l~~l~~L~ 253 (408)
|+.+.+..+...+.. ...+.++....++.+..++.....+ .+... +.....+. +++..++..+ -.+..+..+
T Consensus 79 ~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~~g~~~~~ 156 (429)
T TIGR00909 79 ELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYI-LYLGAKESG 156 (429)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHH-HHhCcHHHH
Confidence 998887766543332 3334445555566666555421100 00000 00000011 1111111122 234556666
Q ss_pred HHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 015344 254 GLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH 333 (408)
Q Consensus 254 ~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~ 333 (408)
+++.+.....+...++.++..+.+.... ++++. ....+.++..++...+|+|.|........+|+ |||+|
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r 226 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASN--NYTPF----MPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER 226 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHH--hcCCC----CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc
Confidence 6665544333322211111122121111 22211 12245678888999999999999999999999 57754
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHH
Q 015344 334 VPMWRGAKVAYLFIAMCLFPVAIGGF 359 (408)
Q Consensus 334 ~~m~k~v~~s~~i~~~~Y~~vgi~GY 359 (408)
+..|++..+..++.++|+.+.....
T Consensus 227 -~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 227 -DIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3569999999999999998865443
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.90 E-value=2.1e-07 Score=96.94 Aligned_cols=244 Identities=12% Similarity=0.019 Sum_probs=132.9
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v-~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+-+.+++++..+++++|+|++.+|...++.|-. ..++..++.+++.+.......|.....|.+ .....+.+++.+|
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~-sGG~y~y~~~~~G 84 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL-DGGIYAYAREGFG 84 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCChhhhHHhHcc
Confidence 56799999999999999999999999887765522 234445556665555555666655433331 1244556689999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHH-HHHhccCCCchhhHHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSLI 258 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v-~i~L~~l~~l~~L~~vS~i 258 (408)
|+.+....+...+.. .....++.....+.+..+++.... .. ....+.....++ .+.+.-.+..+..+++..+
T Consensus 85 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~~-----~~-~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~ 157 (473)
T TIGR00905 85 PYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGYFFPLFGS-----GN-PVPSILGASVLLWVFTFLVLRGVRQAAFINTI 157 (473)
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcC-----CC-cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 998887766443222 222334444444444444331110 00 111121111111 1111123455555555544
Q ss_pred HHHHHHHHHH--hheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344 259 GAITAVTYST--MVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM 336 (408)
Q Consensus 259 ~~~~~l~y~~--ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m 336 (408)
..+..+.-.+ ++..+...++.....++.+...+.....+.++..++....|+|.|-.....+-+|+| | +|..
T Consensus 158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k----~--~r~i 231 (473)
T TIGR00905 158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAK----N--KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----c--cccc
Confidence 3322111111 111110111111001111000000112345778888999999999999999999994 4 3446
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 015344 337 WRGAKVAYLFIAMCLFPVAIGG 358 (408)
Q Consensus 337 ~k~v~~s~~i~~~~Y~~vgi~G 358 (408)
.|++..+..++.++|+......
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~ 253 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLS 253 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998876553
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.89 E-value=1.5e-07 Score=96.98 Aligned_cols=240 Identities=11% Similarity=0.089 Sum_probs=130.8
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
++|+-+.++.+...+.++||+|++.+|...++.|-. .++..++.++..+.......|.....|... ...+.+++ +|
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~g 78 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-IS 78 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-HC
Confidence 468899999999999999999999999999988753 445555555555555555555544333221 44444566 79
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHH-HHHhccCCCchhhHHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSLI 258 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v-~i~L~~l~~l~~L~~vS~i 258 (408)
+.++....+.......++ ..++.+...+.+..++.. .. .+. ..+.+...++ .+.+.-++..+..+.+..+
T Consensus 79 ~~~gf~~gw~~~~~~~~~-~~~~~~~~~~y~~~~~p~-----~~-~~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i 149 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIG-NLAIGITAVSYLSTFFPV-----LN-DPI--PAGIACIAIVWVFTFVNMLGGTWVSRLTTI 149 (435)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccc-----cC-ChH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 988776655322111112 223333333343333221 10 111 1111111111 1111112334444444433
Q ss_pred HHHHHHHHHHhheeeeeecCCCCC--CCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344 259 GAITAVTYSTMVWVLSVSQPRPPN--ISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM 336 (408)
Q Consensus 259 ~~~~~l~y~~ii~~~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m 336 (408)
..+..+...+...+.........+ .++. .....+..++..++....|+|.|-..+-..-+|+ |||+| .+
T Consensus 150 ~~~~~li~~~~~~i~g~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~i 220 (435)
T PRK10435 150 GLVLVLIPVVGTAIVGWHWFDAATYAANWN----TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TV 220 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHhhccccc----CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cc
Confidence 322211111111111111111111 1111 1112345788999999999999999999999999 57854 35
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Q 015344 337 WRGAKVAYLFIAMCLFPVAIGGFWA 361 (408)
Q Consensus 337 ~k~v~~s~~i~~~~Y~~vgi~GYla 361 (408)
.|++..+..++.++|+...+.....
T Consensus 221 PrAi~~~~~iv~ilYil~~~~~~~~ 245 (435)
T PRK10435 221 PLATMLGTGLAGIIYIAATQVISGM 245 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6999999999999999886654433
No 21
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.86 E-value=3.6e-07 Score=90.38 Aligned_cols=235 Identities=17% Similarity=0.229 Sum_probs=137.3
Q ss_pred CCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccc
Q 015344 103 NGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERL 182 (408)
Q Consensus 103 ~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~ 182 (408)
|-|.+|..+.+....+|+|++.+|...++.+- .|.+..++.++....-.+++.+..+..++ .+..|+.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~---~~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG---KTLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhCcHH
Confidence 35778999999999999999999988766641 33344444455555555555555443333 389999999999999
Q ss_pred hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHH-HHHHhccCCCchhhHHHHHHHHH
Q 015344 183 GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS-LCIVLSQLPNLNSIAGLSLIGAI 261 (408)
Q Consensus 183 g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~-v~i~L~~l~~l~~L~~vS~i~~~ 261 (408)
|+.+.....++. +......+-..++.++ ..-.+ ++..|.+.... +.......+.++.+++.+.+-..
T Consensus 77 g~ii~~~~~l~~-l~~~~~~lr~~~~~i~----~~~lp-------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~ 144 (320)
T PF03845_consen 77 GKIINLLYILYF-LLISALVLREFSEFIK----TYLLP-------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFP 144 (320)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHhcC-------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 988766443332 2222111222222222 11111 13344433222 22222335678888875544433
Q ss_pred HHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhH
Q 015344 262 TAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAK 341 (408)
Q Consensus 262 ~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~ 341 (408)
..+...+++......+ .+++...+. ...++.+++.+.-...+.|.+-..+.-+...+ ++|++ ..|...
T Consensus 145 ~~~i~~~~i~~~~~~~-----~~~~~l~P~-~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~--~~k~~~ 212 (320)
T PF03845_consen 145 IFLILLLLILLLSIPN-----IDWDNLLPV-LESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKK--LKKSLL 212 (320)
T ss_pred HHHHHHHHHHHHhccc-----CCHHHeeCc-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchH--HHHHHH
Confidence 2222222222222222 222211111 12356678888888888898888888888888 34544 448888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 015344 342 VAYLFIAMCLFPVAIGGFWAYGNL 365 (408)
Q Consensus 342 ~s~~i~~~~Y~~vgi~GYlaFG~~ 365 (408)
.+..+...+|...-+.....||.+
T Consensus 213 ~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 213 IAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888878888888854
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.80 E-value=7e-07 Score=92.43 Aligned_cols=238 Identities=13% Similarity=0.166 Sum_probs=134.9
Q ss_pred cccCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHH
Q 015344 99 TESRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA 177 (408)
Q Consensus 99 ~~~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~ 177 (408)
+.+|+-+.++..+..+.++||+|++.+| .+.+.+|-. +++..++.+++.+.....+.|.....+.. ..+.+.+++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~--Gg~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDT--GSFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Confidence 3467889999999999999999999999 778888864 66777777777776677777765433332 2677788999
Q ss_pred hCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHH--HHHHhccCCCchhhHHH
Q 015344 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS--LCIVLSQLPNLNSIAGL 255 (408)
Q Consensus 178 ~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~--v~i~L~~l~~l~~L~~v 255 (408)
+|+.++....+...+.. ...+.+.....++.+..++ + .. ..|.+...+ +...+- +...+..+++
T Consensus 86 ~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~-----~-----~~--~~~~~~~~~~~~~~~~n-~~gv~~~~~~ 151 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQYWF-----P-----DI--PLWLFSLILTIVLTLTN-LYSVKSYGEF 151 (452)
T ss_pred hCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc-----C-----cC--cHHHHHHHHHHHHHHHH-HHhcchhhHH
Confidence 99988877665433322 2223333333443333221 1 11 233322211 111111 1223333333
Q ss_pred HHHHHHHH----HHHHHhheeeeeecCCCC--CCCCCCCCCCC--CcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCC
Q 015344 256 SLIGAITA----VTYSTMVWVLSVSQPRPP--NISYEPLSSAS--PAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST 327 (408)
Q Consensus 256 S~i~~~~~----l~y~~ii~~~~i~~g~~~--~~~~~~~~~~~--~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~ 327 (408)
..+..+.- +.++++.+.. ...+... ...+.+..+.. .+..+.++..++....|+|.|...+..+-+|+
T Consensus 152 ~~~~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~--- 227 (452)
T TIGR01773 152 EFWFALIKVIAIIAFIILGAVA-IFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES--- 227 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh---
Confidence 22221111 1111111100 1111110 00111111111 12244578899999999999999999999999
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 015344 328 FKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGF 359 (408)
Q Consensus 328 ~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GY 359 (408)
|||+| ...|++..+...+.++|+.......
T Consensus 228 -k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 228 -SNPIK-SITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred -cChhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 57865 3568887777788888887644333
No 23
>PRK11021 putative transporter; Provisional
Probab=98.80 E-value=1.3e-06 Score=89.36 Aligned_cols=228 Identities=15% Similarity=0.151 Sum_probs=129.0
Q ss_pred cHHHHHHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccch
Q 015344 105 NAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG 183 (408)
Q Consensus 105 s~~~a~f~l~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g 183 (408)
+.++++...+.++||+|++.+|- +.+.+|- ..++..++.++..........|.....|.. ......+++.+|++++
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a--GG~y~y~~~~~G~~~g 78 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA--GGPAHFVGMAFGPRLG 78 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHhHHHHhCchhH
Confidence 57889999999999999999994 4556663 456666777777666666677765444432 2556677889999988
Q ss_pred hhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHH-HHHhccCCCchhhHHHHHHHHHH
Q 015344 184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIVLSQLPNLNSIAGLSLIGAIT 262 (408)
Q Consensus 184 ~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v-~i~L~~l~~l~~L~~vS~i~~~~ 262 (408)
....+...+....+. .+......+.+..++ .. .. ...+.+...++ ++.+.-++..+..+++..+..+.
T Consensus 79 f~~gw~~~~~~~~~~-~~~~~~~~~~~~~~~----~~----~~--~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~ 147 (410)
T PRK11021 79 RVTGWLFLSVIPVGL-PAALQIAAGFGQALF----GW----SS--WQLLLAELLTLALLWLLNLRGASSSANLQTVIALL 147 (410)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHHHc----CC----CC--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 776654332221121 122222222222221 10 01 11121111111 11111233444444444332221
Q ss_pred HHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHH
Q 015344 263 AVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKV 342 (408)
Q Consensus 263 ~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~ 342 (408)
.+. ++.+. +..+.....++. .. .....++.++..++....|+|.|...+...-+|+ |||+| .+.|++..
T Consensus 148 ~~~--i~~~~--~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~ 216 (410)
T PRK11021 148 IVA--LVVAI--WWAGDIKPADIP-FP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMI 216 (410)
T ss_pred HHH--HHHHH--HHHcCCchhcCC-CC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHH
Confidence 111 11111 111111111111 11 1112356788999999999999999999999999 67865 36699999
Q ss_pred HHHHHHHHHHHHHHH
Q 015344 343 AYLFIAMCLFPVAIG 357 (408)
Q Consensus 343 s~~i~~~~Y~~vgi~ 357 (408)
+..++.++|+.+.+.
T Consensus 217 ~~~~~~~lYil~~~~ 231 (410)
T PRK11021 217 GLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 24
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.79 E-value=6.7e-07 Score=92.43 Aligned_cols=239 Identities=15% Similarity=0.144 Sum_probs=126.5
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
++|+-+.++++...++.++|+|++.+|...++.|.. .+...++.++..+.....+.|.....|.. ....+-+++.+|
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~a--GG~y~~~~~~~g 82 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSP--GGSYAYARRCFG 82 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhHHHHHHcC
Confidence 457889999999999999999999999888887743 33444444555554455556654333321 133344888999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAGLSL 257 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~vS~ 257 (408)
+.++.+..+...+....+ ..+......+.+..+++.. . +.....++..++++.+.. +...+...++..
T Consensus 83 ~~~gf~~gw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~ 152 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIG-NIAMVVIGVGYLSYFFPIL--------K-DPLVLTITCVVVLWIFVLLNIVGPKMITRVQA 152 (445)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc--------C-CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 988876554332221111 1222222222222222110 0 011111111111111111 223444444443
Q ss_pred HHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 015344 258 IGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW 337 (408)
Q Consensus 258 i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~ 337 (408)
+..+..+.-.++.....+.....+ .+.+.........+.++..++....|+|.|-......-+|+ |||+|. ..
T Consensus 153 i~~~~~~i~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r~-iP 225 (445)
T PRK10644 153 VATVLALIPIVGIAVFGWFWFRGE--TYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKRN-VP 225 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCch--hccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCcccc-hh
Confidence 332221111111111111111111 11100001112234567778889999999999999999999 578653 56
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 015344 338 RGAKVAYLFIAMCLFPVAIGG 358 (408)
Q Consensus 338 k~v~~s~~i~~~~Y~~vgi~G 358 (408)
|++..+..+++++|+.+.+.-
T Consensus 226 rai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 226 IATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886653
No 25
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.72 E-value=2.4e-06 Score=90.97 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=134.9
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHH
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAF--AFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA 177 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Af--a~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~ 177 (408)
-+|+-+.++.+...+..++|+|+..+|-.. +..|-. .++..++.++.++.......|.....|... +...-++++
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~~ 102 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYVT 102 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHHH
Confidence 357899999999999999999999999543 457754 455566677776666666666654333221 222233467
Q ss_pred hCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCC------CCCCCCcc--hHHHHHHHHHHHHhccCCCc
Q 015344 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPL------CSSNPLTT--VEWYLVFTSLCIVLSQLPNL 249 (408)
Q Consensus 178 ~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~------~~~~~l~~--~~~~ii~~~v~i~L~~l~~l 249 (408)
+|+.++.+..+...+.... .+.+.....++.+..++....... .....+.. ..+.+++.++ +.+.-....
T Consensus 103 ~G~~~gfi~GW~~~l~~~~-~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l-~~~ln~~Gi 180 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVI-GTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILL-LAVLLSFGV 180 (557)
T ss_pred hCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHH-HHHHHHhch
Confidence 8998887766544332211 122222223344444432110000 00000111 1111111111 111123455
Q ss_pred hhhHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCC--CCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCC
Q 015344 250 NSIAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLS--SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST 327 (408)
Q Consensus 250 ~~L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~--~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~ 327 (408)
+..+++..+..+..+...++.++..+..+...+....... ++..+..+.+++.++....|+|.|-..+...-+|+
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~--- 257 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV--- 257 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc---
Confidence 6666665544333222222222222222222111100000 01112345678999999999999999999999999
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 015344 328 FKHPAHVPMWRGAKVAYLFIAMCLFPVAIGG 358 (408)
Q Consensus 328 ~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~G 358 (408)
|||++ .+.|++..++.+++++|+.+.+.-
T Consensus 258 -knP~r-~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 258 -KNPQR-AIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred -cCccc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 67865 466999999999999999876543
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.65 E-value=4.1e-06 Score=87.26 Aligned_cols=239 Identities=16% Similarity=0.152 Sum_probs=128.3
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
-+|+.+.++.....+.++||+|++..| .+++++|. ..++..++++++.+....-+.|.... +.+..++.+.+++.+
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~--~~~~~~~~~ya~~~~ 94 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS--NLEYKSFSDFASDLL 94 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcHHHHHHHHh
Confidence 467889999999999999999999987 57888887 35556666666665555555555432 223446778999999
Q ss_pred CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHH
Q 015344 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 258 (408)
Q Consensus 179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i 258 (408)
|+..+.+..+...+.. .-...+.....+..+..+ . + ......+.+++..+...+- +...+..+++..+
T Consensus 95 g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~~~----~-p-----~~~~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~ 162 (469)
T PRK11049 95 GPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQFW----F-P-----DLSDWVASLAVVLLLLSLN-LATVKMFGEMEFW 162 (469)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----c-C-----CCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHH
Confidence 9988877766443221 111122222222222211 1 1 1111222222111111111 2223333333322
Q ss_pred HHHHHHHH--HHhheeee-eecC--CCCCC--CCCCCCCCC--CcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344 259 GAITAVTY--STMVWVLS-VSQP--RPPNI--SYEPLSSAS--PAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (408)
Q Consensus 259 ~~~~~l~y--~~ii~~~~-i~~g--~~~~~--~~~~~~~~~--~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~ 329 (408)
..+.-+.. .+++.++. +..+ ...+. .+.+..+.. .+..+.++..++....|+|.|-..+...-+|+ |
T Consensus 163 ~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----k 238 (469)
T PRK11049 163 FAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----K 238 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----c
Confidence 21111110 01111111 1111 11110 111111111 12245578899999999999999999999999 5
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHH
Q 015344 330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGG 358 (408)
Q Consensus 330 ~P~~~~m~k~v~~s~~i~~~~Y~~vgi~G 358 (408)
||++ .+.|++..+...+.++|+...+.-
T Consensus 239 nP~r-~iPrai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 239 DPEK-SLPRAINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred CHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7865 356888766666677777655443
No 27
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.60 E-value=4.1e-06 Score=87.94 Aligned_cols=244 Identities=9% Similarity=0.062 Sum_probs=128.9
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHH
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA 177 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~A-fa~~G~v-~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~ 177 (408)
-+|+-+.++.....+.+++|+|++..|.. .+++|-. +.++..++.+++.+.......|.....|.. .....-.++.
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~s--GG~y~~~~~~ 117 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKS--GGEYNYILEV 117 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CchhhhHHhH
Confidence 35778999999999999999999999865 5556633 122334555555565566666665433321 2344455678
Q ss_pred hCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHH
Q 015344 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGL 255 (408)
Q Consensus 178 ~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~v 255 (408)
+|+.++.+..+........+.+..+.+..++.+.. ....+ + ........++...+++++. -....+...++
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~---~~~~~-~---~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILT---PVFPD-C---EVPEWAIRLVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCC-C---CCchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99987776655332211122333333333333211 11111 1 0011111111111111111 13344555554
Q ss_pred HHHHHHHHHHHHHhheeee---eecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 015344 256 SLIGAITAVTYSTMVWVLS---VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332 (408)
Q Consensus 256 S~i~~~~~l~y~~ii~~~~---i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~ 332 (408)
..+..+..+...++.++.. +..+...+.+.+..... ...+..++..++....|+|.|-..+..+.+|+ |+|+
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~ 265 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEG-TETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPY 265 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCC-CCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCch
Confidence 4433322221111111111 11222111111100001 11235678889999999999999999999999 5786
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHH
Q 015344 333 HVPMWRGAKVAYLFIAMCLFPVAIGG 358 (408)
Q Consensus 333 ~~~m~k~v~~s~~i~~~~Y~~vgi~G 358 (408)
+ ...|++..+..++.++|+.+.+.-
T Consensus 266 r-~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 266 R-TLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 356999999999999999885544
No 28
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.58 E-value=4.6e-06 Score=86.15 Aligned_cols=236 Identities=12% Similarity=0.095 Sum_probs=123.3
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHchhhcCCC-ccCCHHHHHHHH
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWS-WGILSLTIAYCWQLYTLWILVQLHEAVPGK-RYNRYVELAQAA 177 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~A-fa~~G~v-~Giillil~~~l~~yt~~lLv~~~~~~~g~-r~~sY~el~~~~ 177 (408)
+|+-+.++.....+..++|+|++..|.. .+..|-. ..++..++.+++.+.......|.....|.. ....| .++.
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~~~ 83 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LKNA 83 (445)
T ss_pred cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HHHh
Confidence 5788999999999999999999999975 4455633 234445556666665565566654332221 11234 4577
Q ss_pred hCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHH
Q 015344 178 FGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGL 255 (408)
Q Consensus 178 ~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~v 255 (408)
+|+.++....+.............+.+..++.+... . + . ....+.++...+.+.+. -.+..+..+++
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~----~-~----~--~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v 152 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFL----T-P----I--DPLLGKFIAAGLIIAFMLLHLRSVEGGAAF 152 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-C----C--chHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999877666554322111112223333333333221 1 1 0 01111111111111111 12334434444
Q ss_pred HHHHHHHHHHHH--HhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 015344 256 SLIGAITAVTYS--TMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH 333 (408)
Q Consensus 256 S~i~~~~~l~y~--~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~ 333 (408)
..+..+..+.-. ++++++....+. +..............+.++..++....|+|.|-.....+.+|+ |||+|
T Consensus 153 ~~~~~~~~~~~l~~~ii~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r 226 (445)
T PRK11357 153 QTLITIAKIIPFTIVIGLGIFWFKAE--NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc--cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc
Confidence 333222211111 111111111211 1000000000111124577888999999999999999999999 67875
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH
Q 015344 334 VPMWRGAKVAYLFIAMCLFPVAIG 357 (408)
Q Consensus 334 ~~m~k~v~~s~~i~~~~Y~~vgi~ 357 (408)
.+.|++..++.+++++|+.+...
T Consensus 227 -~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 227 -TMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999887553
No 29
>PRK10249 phenylalanine transporter; Provisional
Probab=98.57 E-value=7.2e-06 Score=85.20 Aligned_cols=236 Identities=16% Similarity=0.122 Sum_probs=130.3
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+-+.++..+..+..+||+|++.+| .+.+++|- ..++..++.+++.+..+.-+.|.....+.. ..+.+.+++.+|
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~--Gg~~~y~~~~~g 96 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVS--GSFAHFAYKYWG 96 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhC
Confidence 46788899999999999999999988 55666675 466667777777777777777765544332 367778899999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~ 259 (408)
+.++....+...+.. .....+.....+..+..+ . + ......+.+++..+...+- +...+..+++..+.
T Consensus 97 ~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~~----~-~-----~~~~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~ 164 (458)
T PRK10249 97 PFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQYW----F-P-----DVPTWIWAAAFFIIINAVN-LVNVRLYGETEFWF 164 (458)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc----C-C-----cCcHHHHHHHHHHHHHHHH-HhcchhhhhHHHHH
Confidence 988877766432221 111222222222222211 1 1 1111122222211111111 22333333322111
Q ss_pred H---HHHHH-HHHhheeeeeecCCC-CCCCCCCCCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 015344 260 A---ITAVT-YSTMVWVLSVSQPRP-PNISYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332 (408)
Q Consensus 260 ~---~~~l~-y~~ii~~~~i~~g~~-~~~~~~~~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~ 332 (408)
. +..+. ..++.+.+ +..+.. +..+++...+ ...+..+.++..++....|+|.|-..+...-+|+ |+|+
T Consensus 165 ~~ikv~~i~~~i~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~ 239 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWL-LFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPE 239 (458)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHh
Confidence 1 11111 11111100 111111 1111110000 1112356678899999999999999999999999 5776
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHH
Q 015344 333 HVPMWRGAKVAYLFIAMCLFPVAIG 357 (408)
Q Consensus 333 ~~~m~k~v~~s~~i~~~~Y~~vgi~ 357 (408)
+ .+.|++..+...+.++|+...+.
T Consensus 240 k-~iPrai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 240 K-SIPKAVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 36689998888888888775443
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.56 E-value=7.1e-06 Score=85.41 Aligned_cols=246 Identities=14% Similarity=0.043 Sum_probs=127.5
Q ss_pred CCCcHHHHHHHHHhhhhhhhhchhHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344 102 RNGNAHYAAFHNLNAGVGFQALLLPVAFA-FLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~GiLsLP~Afa-~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~ 180 (408)
|+-+.++.+...+.++||+|++.+|...+ .+|....++..++.++..+.......|.....|... ....+.+++.||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence 46788999999999999999999997644 555333344456666666666666666554333211 1344558899999
Q ss_pred cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHHHHH
Q 015344 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSLI 258 (408)
Q Consensus 181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~vS~i 258 (408)
..|.+..+...+....+ ..+|.....+.+..+++... ...+...+.+.. ++++.+. -.+..+..+++..+
T Consensus 80 ~~gf~~gw~~w~~~~~~-~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~-~~~~~~~~ln~~Gv~~~~~i~~i 151 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLG-NVAYATLLFSTLGYFFPIFG------GGNNPPSIIGAS-VLLWCVHFLVLRGVEGAAFINTI 151 (468)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccc------CCCcHHHHHHHH-HHHHHHHHHHHhCHHHHHHHHHH
Confidence 88877665432221111 23333333333332221110 011111122111 1111111 13445555554443
Q ss_pred HHHHHHHHH--HhheeeeeecCCCCCCC-CCCCCC-CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 015344 259 GAITAVTYS--TMVWVLSVSQPRPPNIS-YEPLSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV 334 (408)
Q Consensus 259 ~~~~~l~y~--~ii~~~~i~~g~~~~~~-~~~~~~-~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~ 334 (408)
..+.-+.-. +++......++..-..+ ++...+ ......+.++..++....|+|.|-.....+-+|.| + +|
T Consensus 152 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k----~--~k 225 (468)
T TIGR03810 152 TTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE----K--RS 225 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc----C--cc
Confidence 322211110 11111111111110001 000000 00111234566888899999999998888888883 3 34
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 015344 335 PMWRGAKVAYLFIAMCLFPVAIGGFWAY 362 (408)
Q Consensus 335 ~m~k~v~~s~~i~~~~Y~~vgi~GYlaF 362 (408)
.+.|++..+..+++++|+.+.+..+...
T Consensus 226 ~ip~ai~~~~~~v~~lY~l~~~~~~g~~ 253 (468)
T TIGR03810 226 DVGKATVIGLIGVLAIYVLVSVLSYGIM 253 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4669999999999999998876655443
No 31
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.54 E-value=1.2e-05 Score=83.76 Aligned_cols=237 Identities=12% Similarity=0.131 Sum_probs=131.5
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+.+.++..+..+..+||+|++..| .+.+.+|-...++..++.+++.+....-+.|.....+. ....|.+.+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~-~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV-VSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHcC
Confidence 36778899999999999999999977 66777774433555666666666666667776544431 12368888999999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~ 259 (408)
+.++....+...+.. ...+.+.....+..+.. ..+ ......|..++.++...+- +...+..+++..+.
T Consensus 80 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~in-~~gv~~~~~~~~~~ 147 (478)
T TIGR00913 80 PAFGFAVGWNYWLQW-LIVLPLELVTASMTIQY-----WTD-----KVNPAVWIAIFYVFIVIIN-LFGVKGYGEAEFWF 147 (478)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----cCC-----CCCHHHHHHHHHHHHHHHH-HhcchHHHHHHHHH
Confidence 998877665433221 11222233333333221 111 1122334332222111111 23334444433222
Q ss_pred HH----HHHHHHHhheeeeeecCCCCC--CC---CC---CCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCC
Q 015344 260 AI----TAVTYSTMVWVLSVSQPRPPN--IS---YE---PLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPST 327 (408)
Q Consensus 260 ~~----~~l~y~~ii~~~~i~~g~~~~--~~---~~---~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~ 327 (408)
.+ ..+.+.++.+.. +..+.... .. +. ...+......+.++..++....|+|.|-..+..+-+|+
T Consensus 148 ~~~ki~~l~~~ii~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~--- 223 (478)
T TIGR00913 148 SSIKILAIIGFIILSIIL-NCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA--- 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh---
Confidence 11 111111111111 11111000 00 00 00000001125678888999999999999999999999
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHH
Q 015344 328 FKHPAHVPMWRGAKVAYLFIAMCLFPVAI 356 (408)
Q Consensus 328 ~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi 356 (408)
|||+| .+.|++..+..++.++|+...+
T Consensus 224 -knP~r-~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 224 -ANPRK-SIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred -cChhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 57865 4679999999999999998654
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.54 E-value=1.9e-05 Score=81.92 Aligned_cols=236 Identities=14% Similarity=0.145 Sum_probs=128.1
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVA-FAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~A-fa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
-+|+-+.++..+..+..++|+|++.+|.. .+.+|- ..++..++.+++.+....-+.|.....+.. ....+.+++.+
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~--Gg~y~y~~~~~ 83 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAA--SSFSRYAQENL 83 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHc
Confidence 35778999999999999999999999854 666775 356777777777777777777776444332 25556778999
Q ss_pred CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHH
Q 015344 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 258 (408)
Q Consensus 179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i 258 (408)
||.++.+..+...+.. ...+.+.....+..+..+ . + ......|.+++.++...+ -+...+..+.+..+
T Consensus 84 G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~~----~-~-----~~~~~~~~~~~~~l~~~l-n~~gv~~~~~~~~~ 151 (457)
T PRK10580 84 GPLAGYITGWTYCFEI-LIVAIADVTAFGIYMGVW----F-P-----TVPHWIWVLSVVLIICAV-NLMSVKVFGELEFW 151 (457)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----C-C-----CCChHHHHHHHHHHHHHH-HHccchhHHHHHHH
Confidence 9988877766433221 111111112222222111 1 1 111223322222111111 12233333333321
Q ss_pred HHH---HHH-HHHHh---heeeeeecC-CCCCCCCCCCCC-CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344 259 GAI---TAV-TYSTM---VWVLSVSQP-RPPNISYEPLSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (408)
Q Consensus 259 ~~~---~~l-~y~~i---i~~~~i~~g-~~~~~~~~~~~~-~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~ 329 (408)
..+ ..+ ...++ +........ ...+.+.. ... ...+..+.++..++....|+|.|...+...-+|+ |
T Consensus 152 ~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----k 226 (457)
T PRK10580 152 FSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNL-WSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----K 226 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccc-CCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----c
Confidence 111 111 11110 000111111 11111100 000 1112345578889999999999999999999999 5
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHH
Q 015344 330 HPAHVPMWRGAKVAYLFIAMCLFPVAI 356 (408)
Q Consensus 330 ~P~~~~m~k~v~~s~~i~~~~Y~~vgi 356 (408)
+|+|. ..|++..+...+.++|+....
T Consensus 227 nP~k~-iPrAi~~~~~~~~~~y~~~~~ 252 (457)
T PRK10580 227 DPEKS-IPRAINSVPMRILVFYVGTLF 252 (457)
T ss_pred ChhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 78753 558887777777777766643
No 33
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.53 E-value=1.3e-05 Score=82.76 Aligned_cols=236 Identities=14% Similarity=0.060 Sum_probs=126.6
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~ 180 (408)
+|+-+.++.....+..++|....+.+.+++..|+..-++..++.+++.......+.|.....+.. ......+++.+|+
T Consensus 6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~--Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA--GGGYGFARRAFGP 83 (442)
T ss_pred hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHhCc
Confidence 46788888988888888985555668889999986444444555555555555566665443332 2555677899999
Q ss_pred cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Q 015344 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGA 260 (408)
Q Consensus 181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~ 260 (408)
.++.+..+...+.. .....++....++.+..+++ + .....+.+++..+...+- +...+..+++..+..
T Consensus 84 ~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~~~p----~------~~~~~~~~~~~~~~~~ln-~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 84 WGGFLAGTAILIEF-AFAPPAIACFIGAYCESLFP----V------GPGWLAALVFYIVFIGIN-ILGVGEAAKLEFVVT 151 (442)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc----c------CchhHHHHHHHHHHHHHH-HHHHHHHHhHHHHHH
Confidence 88876655433222 22333445555555544321 1 111111211111111111 223333333333222
Q ss_pred HHHHHHHHhheeeeeecCCCCCC---CCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 015344 261 ITAVTYSTMVWVLSVSQPRPPNI---SYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW 337 (408)
Q Consensus 261 ~~~l~y~~ii~~~~i~~g~~~~~---~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~ 337 (408)
+..+...++.++....+....+. ++.+. .......+.+++.++...+|+|.|...+...-+|+ |||++. ..
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r~-ip 225 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGA-SSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKRD-IP 225 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccc-cC
Confidence 11111111111110101000010 00000 01112234578888889999999999999999999 578653 56
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 015344 338 RGAKVAYLFIAMCLFPVAI 356 (408)
Q Consensus 338 k~v~~s~~i~~~~Y~~vgi 356 (408)
|++..+..++..+|+.+..
T Consensus 226 rai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 226 RGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999888888888876643
No 34
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.52 E-value=9.3e-06 Score=91.15 Aligned_cols=248 Identities=13% Similarity=0.089 Sum_probs=139.7
Q ss_pred ccCCCcHHHHHHHH-Hhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhh-cCCCccCCHHHHHHH
Q 015344 100 ESRNGNAHYAAFHN-LNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA-VPGKRYNRYVELAQA 176 (408)
Q Consensus 100 ~~r~~s~~~a~f~l-~~~~iG~GiLs-LP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~-~~g~r~~sY~el~~~ 176 (408)
+.++-+++.+++.- +..++|+|+.- +++...++|...+++++++.+++++.|..-+.+...+ .+ +.-.-.....+
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p--~aGG~Y~yisr 151 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVV--KGGGAYYLISR 151 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CccHHHHHHHH
Confidence 34577778888877 99999999977 5588889998778888899999998888877776543 11 11122234567
Q ss_pred HhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCc-chHHHHHHHHHHHHhccCCCchhhHHH
Q 015344 177 AFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLT-TVEWYLVFTSLCIVLSQLPNLNSIAGL 255 (408)
Q Consensus 177 ~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~-~~~~~ii~~~v~i~L~~l~~l~~L~~v 255 (408)
+||+..|..+.++..+.. ...+..|.+-.++.+..++...+.... ..... .+.+.+++.+++..+. +...+..+++
T Consensus 152 alGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf~~~~~~~~-~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~ 228 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLLRENGSKIM-VDPINDIRIYGTVTVVVLLGIS-FAGMEWENKA 228 (953)
T ss_pred HhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccccc-cCccccchHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 899987777666544333 445566777777776666542211000 00111 1222222211111122 2233333333
Q ss_pred HHHHHHHHHHHHHhheeeeeecC-CCCCC---CCC--CCCCC--CCc-CcHHHHHHHHHHHHHhhccccchHHHHhhCCC
Q 015344 256 SLIGAITAVTYSTMVWVLSVSQP-RPPNI---SYE--PLSSA--SPA-ATVFSVMNALGIIAFAFRGHNLAMEIQATMPS 326 (408)
Q Consensus 256 S~i~~~~~l~y~~ii~~~~i~~g-~~~~~---~~~--~~~~~--~~~-~~~~~~~~algii~FAf~~h~vv~~I~~~M~~ 326 (408)
..+-.+..++-.+++++..+... ..+.. .++ .+.+. ... ....+++..++++.+||.|......+-+|+
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl-- 306 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL-- 306 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 33222211111111111111111 00000 000 00000 000 111237778888889999999999999999
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 015344 327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIG 357 (408)
Q Consensus 327 ~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~ 357 (408)
|+|++ .+.|++..++.+++++|+.+.++
T Consensus 307 --KnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 307 --KDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred --cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 67875 46799999999999999998753
No 35
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.52 E-value=1.2e-05 Score=83.89 Aligned_cols=238 Identities=14% Similarity=0.130 Sum_probs=126.2
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+-+.++.....+..+||+|+..+|- +.+.+|-...++..++.+++.+....-+.|.....+.. -.+...+++.+|
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a--GG~y~y~~~~~g 90 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET--GAFHVYAARYLG 90 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHhcC
Confidence 577899999999999999999998884 46777754345556667776666666667765444332 256678888999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~ 259 (408)
+.++....+...+.. ...+.......+..+. . ..+ ......+.+++.+++..+. +...+..+.+..+.
T Consensus 91 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~----~-~~p-----~~~~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~ 158 (471)
T PRK11387 91 PATGYTVAWLYWLTW-TVALGSSLTAAGFCMQ----Y-WFP-----QVPVWPWCLLFCALIFGLN-VVSTRFFAEGEFWF 158 (471)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----h-ccC-----cCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 987766555432221 1111111111121111 1 111 1111122222222111111 22233333222111
Q ss_pred ----HHHHHHHHHhhee--eeee---cCCCCCCCCCCCCC-CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344 260 ----AITAVTYSTMVWV--LSVS---QPRPPNISYEPLSS-ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (408)
Q Consensus 260 ----~~~~l~y~~ii~~--~~i~---~g~~~~~~~~~~~~-~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~ 329 (408)
.+..+.+.++.+. .... .+... ..++.... ...+....++..++...+|+|.|-..+...-+|+ |
T Consensus 159 ~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----k 233 (471)
T PRK11387 159 SLIKVVTILAFIVLGGAAIFGFIPMQDGSPA-PGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----E 233 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----c
Confidence 1111111111000 0000 01000 00110000 0001234567888888999999999999999999 6
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHH
Q 015344 330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGG 358 (408)
Q Consensus 330 ~P~~~~m~k~v~~s~~i~~~~Y~~vgi~G 358 (408)
||++ .+.|++..+..++.++|+...+..
T Consensus 234 nP~r-~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 234 NPAK-VIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7865 467899988888888898876543
No 36
>PRK15049 L-asparagine permease; Provisional
Probab=98.52 E-value=1.5e-05 Score=83.72 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=126.6
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+.+.++..+..+..+||+|++.+|. +++.+|- .+++..++.+++.+..+.-+.|.....|. ......-+++.+|
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G 103 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLG 103 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhC
Confidence 467889999999999999999999885 7777785 45666777777777667677776544333 2367777889999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHH--HHHHhccCCCchhhHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTS--LCIVLSQLPNLNSIAGLSL 257 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~--v~i~L~~l~~l~~L~~vS~ 257 (408)
++++.++.+...+.. ...+.+-....+..+. ..... .. ...|.....+ +...+- +...+....+..
T Consensus 104 ~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~-----~~~~~---~~--~~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~ 171 (499)
T PRK15049 104 EKAAYVAGWMYFINW-AMTGIVDITAVALYMH-----YWGAF---GG--VPQWVFALAALTIVGTMN-MIGVKWFAEMEF 171 (499)
T ss_pred cHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----HhccC---CC--CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 988776665432211 1111111111111111 11100 11 1234322211 111111 122233333222
Q ss_pred HHH----HHHHHHHHhheeeeeecCCCCCC---CCCCCCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 015344 258 IGA----ITAVTYSTMVWVLSVSQPRPPNI---SYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF 328 (408)
Q Consensus 258 i~~----~~~l~y~~ii~~~~i~~g~~~~~---~~~~~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~ 328 (408)
+.. +..+.+.++.+ ..+..+...+. .+....+ ...+..+.+++.++...+|+|.|-..+...-+|+
T Consensus 172 ~~~~iki~~l~~~ii~~i-~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~---- 246 (499)
T PRK15049 172 WFALIKVLAIVTFLVVGT-VFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC---- 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----
Confidence 211 11111111111 11111211100 0100000 1012234556677778999999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 015344 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAIGGF 359 (408)
Q Consensus 329 ~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GY 359 (408)
|+|++ .+.|++..++..+.++|+.......
T Consensus 247 knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~ 276 (499)
T PRK15049 247 KDPQT-MVPKAINSVIWRIGLFYVGSVVLLV 276 (499)
T ss_pred cChhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57865 3668888888888888877655433
No 37
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.50 E-value=1.1e-05 Score=83.76 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=124.9
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+-+.++..+..++.+||+|++..|- +.+++|- ..++..++.+++.+....-+.|.....|.. ..+.+-+++.+|
T Consensus 11 ~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~a--Gg~y~~~~~~~g 87 (456)
T PRK10238 11 KRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVA--GSFSHFAYKYWG 87 (456)
T ss_pred hccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHcC
Confidence 578899999999999999999999884 4666664 445556666666666666666665433332 266666788899
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~ 259 (408)
+..+....+...+.. ...+.+.....++.++.. .+ +.....+.+++..+...+- +...+..+.+..+.
T Consensus 88 ~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~~----~p------~~~~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~ 155 (456)
T PRK10238 88 SFAGFASGWNYWVLY-VLVAMAELTAVGKYIQFW----YP------EIPTWVSAAVFFVVINAIN-LTNVKVFGEMEFWF 155 (456)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----cC------cCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 988877666433322 222333333334333221 11 1111222222211111111 12233333333322
Q ss_pred HHHHHHHHH--hheee-eeecCC-CCCCCCCCCCCC--CCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCc
Q 015344 260 AITAVTYST--MVWVL-SVSQPR-PPNISYEPLSSA--SPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAH 333 (408)
Q Consensus 260 ~~~~l~y~~--ii~~~-~i~~g~-~~~~~~~~~~~~--~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~ 333 (408)
.+..+.-.+ +++.+ .+..+. .+...+....+. ..+..+.++..+++...|+|.|-..+...-+|+ |||+|
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r 231 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh
Confidence 111111000 11000 011111 111111100011 112234577788889999999999999999999 57865
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q 015344 334 VPMWRGAKVAYLFIAMCLFPV 354 (408)
Q Consensus 334 ~~m~k~v~~s~~i~~~~Y~~v 354 (408)
.+.|++..++..+.++|+..
T Consensus 232 -~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 232 -SIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 35688887777777777654
No 38
>PRK10746 putative transport protein YifK; Provisional
Probab=98.48 E-value=2.5e-05 Score=81.25 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=130.5
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+-+.++..+..+.++||+|++..| .+.+.+|- ..++..++.+++.+....-+.|.....|. ..++.+.+++.+|
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~~~~g 85 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAHRYMS 85 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhC
Confidence 57789999999999999999999988 66777785 34555666677666666667776544433 2377888999999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CCCchhhHH-HH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LPNLNSIAG-LS 256 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~~l~~L~~-vS 256 (408)
+.+|....+...+.. ...+.+.....+..++.+ .+ ......|.+++.++...+-. .+...++.. .+
T Consensus 86 ~~~Gf~~gw~~~~~~-~~~~~~~~~a~~~~l~~~-----~p-----~~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 86 PFFGYLTAWSYWFMW-MAVGISEITAIGVYVQFW-----FP-----EMAQWIPALIAVALVALANLAAVRLYGEIEFWFA 154 (461)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc-----cC-----CCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 988876665332221 222222333233332221 11 11122333332221111111 222222221 11
Q ss_pred HHHHHHHHHHHHhheeee-eecCCC-CCCCCCCCCCC--CCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 015344 257 LIGAITAVTYSTMVWVLS-VSQPRP-PNISYEPLSSA--SPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332 (408)
Q Consensus 257 ~i~~~~~l~y~~ii~~~~-i~~g~~-~~~~~~~~~~~--~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~ 332 (408)
.+-++..+.+.++.+.+. ...+.. +...++...++ ....++.++..++....|+|.|-..+...-+|+ |||+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~ 230 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQ 230 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChh
Confidence 111111111111111100 111111 11111111111 112346788899999999999999999999999 5786
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHH
Q 015344 333 HVPMWRGAKVAYLFIAMCLFPVAIG 357 (408)
Q Consensus 333 ~~~m~k~v~~s~~i~~~~Y~~vgi~ 357 (408)
| .+.|++..++..+.++|+.....
T Consensus 231 k-~iP~Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 231 V-TLRSAVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46788888888788888775433
No 39
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.46 E-value=1.6e-06 Score=78.98 Aligned_cols=210 Identities=19% Similarity=0.211 Sum_probs=118.2
Q ss_pred HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHch----------------hhc----------
Q 015344 109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLH----------------EAV---------- 162 (408)
Q Consensus 109 a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~----------------~~~---------- 162 (408)
....+.|.++|+|.|+||.||+.+||+.++.+|.+.+++++.+.-..++.. +.+
T Consensus 17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~ 96 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDD 96 (319)
T ss_pred hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCC
Confidence 445677889999999999999999999999999999999998877766641 000
Q ss_pred -----CC-----Ccc------------------CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHH
Q 015344 163 -----PG-----KRY------------------NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFF 214 (408)
Q Consensus 163 -----~g-----~r~------------------~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~ 214 (408)
.| +|. ...+|++...|.|.+-.+..+++++++ +|-...|--.+--++-++.
T Consensus 97 dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiyl-fgdlaiyaaavpfs~m~it 175 (319)
T KOG3832|consen 97 DVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYL-FGDLAIYAAAVPFSAMNIT 175 (319)
T ss_pred cEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHH-hhhhhhhhhcCchHhhhhh
Confidence 00 000 134677777788765566667777777 8988888766554444443
Q ss_pred HH-HhCC-------CCCCC------C-Cc----chHHHHHHHHHHHHhc-cCCCchhhHHHHHHHHHHHHHHHHhheeee
Q 015344 215 QI-VCGP-------LCSSN------P-LT----TVEWYLVFTSLCIVLS-QLPNLNSIAGLSLIGAITAVTYSTMVWVLS 274 (408)
Q Consensus 215 ~~-~~~~-------~~~~~------~-l~----~~~~~ii~~~v~i~L~-~l~~l~~L~~vS~i~~~~~l~y~~ii~~~~ 274 (408)
-. ...+ +|... + ++ .+.+.+||++++. |+ .+-++++-+++-++..++-- ...+.+.+
T Consensus 176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~-lpftf~diqktk~iqiltslmrw--~~~~~g~~ 252 (319)
T KOG3832|consen 176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLC-LPFTFADIQKTKHIQILTSLMRW--AAFILGIS 252 (319)
T ss_pred hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHc-CceeEeccccchhHHHHHHHHHH--Hhccchhh
Confidence 21 1111 23211 1 11 1233334433221 12 13356666665544433221 11111222
Q ss_pred eecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCC
Q 015344 275 VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMP 325 (408)
Q Consensus 275 i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~ 325 (408)
+..-+.. .+-.+ ...+....-++-..+|...|+|.+|...|.....++
T Consensus 253 l~tmqae-edaa~--a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq 300 (319)
T KOG3832|consen 253 LATMQAE-EDAAA--AHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQ 300 (319)
T ss_pred hhhhhhc-ccccc--cCCccccccccccccchhhHHHHhhccCCCCCCCCe
Confidence 2100110 01010 111122233444557889999999999998888773
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.43 E-value=4.4e-06 Score=85.43 Aligned_cols=239 Identities=15% Similarity=0.104 Sum_probs=128.5
Q ss_pred cHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHchhhcCCCccCCHHHHHHHHhCccch
Q 015344 105 NAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQ-LYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG 183 (408)
Q Consensus 105 s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~-~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g 183 (408)
+++++....++.++|+|+...| .+++.|.. .++..++.+++. ........|.....+. .......+++++||+++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~--~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS--AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS--STTHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC--cCeeeehhhhcccccch
Confidence 5788999999999999999999 77777765 444444444443 3444555555432222 23667788899999988
Q ss_pred hhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHH--HhccCCCchhhHHHHHHHHH
Q 015344 184 VWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCI--VLSQLPNLNSIAGLSLIGAI 261 (408)
Q Consensus 184 ~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i--~L~~l~~l~~L~~vS~i~~~ 261 (408)
.+..+...+.. ...+.++.....+.+...+.. + ...+...+.++..++++ .+.-+...|..+++..+..+
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 149 (426)
T PF13520_consen 78 FIVGWLYWVAY-ILSLASVASSFASYLLSLFGP---D----LNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTV 149 (426)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTG---G----GTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hcccceeEEEe-eccccccccchhhhhhhcccc---c----cccccchheeeeecccccceEeeechhhhhhhhhhhhhh
Confidence 77665433222 223333444344333222110 0 00011111111111111 11124455666666544443
Q ss_pred HHH-HHHHhheeeeeecCCCCCCC---CCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccc
Q 015344 262 TAV-TYSTMVWVLSVSQPRPPNIS---YEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMW 337 (408)
Q Consensus 262 ~~l-~y~~ii~~~~i~~g~~~~~~---~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~ 337 (408)
..+ ...++.++..+.....++.. .. .+......+.+++.++...+|+|.|-.....+-+|+| + |+..
T Consensus 150 ~~i~~~l~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k----~---k~ip 220 (426)
T PF13520_consen 150 IKIVIPLLVLIILGIVSFSFSGFNSLSFS--LSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENK----N---KTIP 220 (426)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHH----S--HSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSS----S---HHHH
T ss_pred hhhhhhhhhheeEEEeeeccccccccccc--ccccCCccccchhhHHHHHHhhccccccccccccccc----c---hhhe
Confidence 333 11111111122221111100 00 0000111233578889999999999999999999983 3 3466
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 015344 338 RGAKVAYLFIAMCLFPVAIGGFWAYGN 364 (408)
Q Consensus 338 k~v~~s~~i~~~~Y~~vgi~GYlaFG~ 364 (408)
|++..+..++.++|+.+.+.-....++
T Consensus 221 ~ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 221 RAIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred eecccchhHHHHHHhhhhheeeecccc
Confidence 999999999999999987665555544
No 41
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.42 E-value=2.7e-06 Score=87.36 Aligned_cols=242 Identities=13% Similarity=0.134 Sum_probs=139.4
Q ss_pred ccccCCCcHHHHHHHHHhhhhhhhhchhHHHHH-hhChh-HHHHHHHHHHHHHHHHHHHHHHchhhc--CCCccCCHHHH
Q 015344 98 ITESRNGNAHYAAFHNLNAGVGFQALLLPVAFA-FLGWS-WGILSLTIAYCWQLYTLWILVQLHEAV--PGKRYNRYVEL 173 (408)
Q Consensus 98 ~~~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa-~~G~v-~Giillil~~~l~~yt~~lLv~~~~~~--~g~r~~sY~el 173 (408)
...+|+-+.+.+++.++..+||+|+...|.... ++|=+ ..+++-++.++++......=.|..... +|- +|.-
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ay- 83 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAY- 83 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhh-
Confidence 444678999999999999999999999997754 44433 344445667777776665555543221 221 3333
Q ss_pred HHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhh-HHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhh
Q 015344 174 AQAAFGERLGVWLALFPTVYLSAGTATTLILLGGET-MKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSI 252 (408)
Q Consensus 174 ~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~-L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L 252 (408)
..++||+.++....+...+...-..+..+-+..++. ++.++. . |... +.+.-.++.+++.+....|..+.
T Consensus 84 i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----c~~p----~~~~~lla~~~l~~lt~~n~~~V 154 (479)
T KOG1287|consen 84 ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----CDVP----RVASKLLAAALLVLLTLINSFSV 154 (479)
T ss_pred HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----CCCc----hHHHHHHHHHHHHHHHHHhhhhh
Confidence 346799887765554443333122334555666665 555443 2 3211 11121222223333334455555
Q ss_pred HHHHHHHHHHHHH---HHHhheeee---eecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCC
Q 015344 253 AGLSLIGAITAVT---YSTMVWVLS---VSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPS 326 (408)
Q Consensus 253 ~~vS~i~~~~~l~---y~~ii~~~~---i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~ 326 (408)
++.+.+=.+.++. ...++++.. ..+|..++.+.++ .+. ...+..++..++=.-.|||.|=..+=-+-+|+
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g-~~~~~g~i~lafysglfa~~GWd~lN~vteEi-- 230 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEG-SDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI-- 230 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc-ccc-CcCchHHHHHHHHHhhhcccCchhhccchHhh--
Confidence 5554333332221 111111111 1233333322111 111 22344568889999999999999999999999
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 015344 327 TFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGF 359 (408)
Q Consensus 327 ~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GY 359 (408)
|||.| ++.+++.+++.+++++|+.+-+..+
T Consensus 231 --knP~k-tLP~Ai~isi~lvt~iYil~NvAy~ 260 (479)
T KOG1287|consen 231 --KNPRR-TLPRAILISIPLVTVIYVLVNVAYF 260 (479)
T ss_pred --cCccc-cchHHHHHhhHHHHHHHHHhHhhee
Confidence 67865 5789999999999999999865443
No 42
>PRK10836 lysine transporter; Provisional
Probab=98.32 E-value=0.00014 Score=76.16 Aligned_cols=243 Identities=13% Similarity=0.144 Sum_probs=128.5
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+-+.++..+..+.++||+|++.+| .+.+++|-...++..++.+++.+..+.-+.|.....|. .......+++.+|
T Consensus 14 ~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~--sGg~y~y~~~~~g 91 (489)
T PRK10836 14 RRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV--SGSFATYGQNYVE 91 (489)
T ss_pred cccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHcC
Confidence 57789999999999999999999999 46778886445667777787777777777776654433 2256666778888
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHH-H
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGL-S 256 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~v-S 256 (408)
+.+|....+..... ...+.+.-...... +.+. ..+ ......+..++.++...+- -.+...++..+ +
T Consensus 92 ~~~gf~~Gw~~~~~--~~~~~a~~~~a~~~---~~~~-~~~-----~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 92 EGFGFALGWNYWYN--WAVTIAVDLVAAQL---VMSW-WFP-----DTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHH---Hhhh-cCC-----CCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 88776665532211 11222211111111 1111 111 1111122222211111111 12222222111 1
Q ss_pred HHHHHHHHHHHH--hheeeeeecCCCCCCCCCCCCC-C-CCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCC
Q 015344 257 LIGAITAVTYST--MVWVLSVSQPRPPNISYEPLSS-A-SPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPA 332 (408)
Q Consensus 257 ~i~~~~~l~y~~--ii~~~~i~~g~~~~~~~~~~~~-~-~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~ 332 (408)
.+=++..+.+.+ +.......++. ++..++...+ . .....+.++..+.....|+|.|-..+...-+|+ |||+
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~ 235 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGA-EPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC-CCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHH
Confidence 111111011111 11111111111 1111110110 0 011234556666667789999999999999999 6786
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 015344 333 HVPMWRGAKVAYLFIAMCLFPVAIGGFWAY 362 (408)
Q Consensus 333 ~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaF 362 (408)
| .+.|++..++..+.++|+.....-....
T Consensus 236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 236 K-NIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 5 4679999999999999998765443333
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.26 E-value=6.6e-05 Score=77.76 Aligned_cols=224 Identities=14% Similarity=0.074 Sum_probs=118.9
Q ss_pred HhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHHHHHH
Q 015344 114 LNAGVGFQALLLPV-AFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTV 192 (408)
Q Consensus 114 ~~~~iG~GiLsLP~-Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~~~~~ 192 (408)
+.++||+|++..|- ++++.|. ..++..++.+++.+.....+.|.....|. .....+.+++.+|+.+|....+...+
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~--~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD--TGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 56789999999995 7889996 47777777788777777777776544333 23677788899999888776654332
Q ss_pred HHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHH--Hhh
Q 015344 193 YLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYS--TMV 270 (408)
Q Consensus 193 ~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~~~l~y~--~ii 270 (408)
.. ...+.......+.. ++... .......+.+++.++...+- +...+..+.+..+..+.-+... +++
T Consensus 81 ~~-~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii 148 (446)
T PRK10197 81 FW-VLVIPLEANIAAMI----LHSWV------PGIPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIF 148 (446)
T ss_pred HH-HHHHHHHHHHHHHH----HHhcc------ccCcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 21 11111111111111 11111 11111222222211111111 2223333332222211111100 111
Q ss_pred eeeeeecCCCCC---CCCCCCCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHH
Q 015344 271 WVLSVSQPRPPN---ISYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYL 345 (408)
Q Consensus 271 ~~~~i~~g~~~~---~~~~~~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~ 345 (408)
..+....|..+. ....+..+ ...+..+.++..++....|+|.|-..+...-+|+ |||+| .+.|++..++.
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~ 223 (446)
T PRK10197 149 LGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIW 223 (446)
T ss_pred HHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHH
Confidence 111111221110 00000000 1112345689999999999999999999999999 57865 46689888888
Q ss_pred HHHHHHHHHHHH
Q 015344 346 FIAMCLFPVAIG 357 (408)
Q Consensus 346 i~~~~Y~~vgi~ 357 (408)
.+.++|+...+.
T Consensus 224 ~i~i~Yil~~~~ 235 (446)
T PRK10197 224 RISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHH
Confidence 888899876544
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00018 Score=74.13 Aligned_cols=248 Identities=16% Similarity=0.161 Sum_probs=127.5
Q ss_pred cCCCcHHH-HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHY-AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~-a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+++.+.++ ........++|.|++.+|......+ ....+..++.+++.........|.....+. .-.+.+-+++.+|
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~--~GG~y~~~~~~~g 87 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS--AGGAYAYAKRALG 87 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeeeehhhhcC
Confidence 45566666 7788888899999999998888775 111222233333333333444444332222 2256667789999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIAGLSL 257 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~~vS~ 257 (408)
++.+....+...+.. .....+..+..++.+..++.... . .......+.++..++...+. -.+..+..+++..
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 88 PRLGFLAGWLYLLAY-VIALAAIAIGAASYLSYLFPGPG-L----LSIGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcch-h----hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 887755544333222 22233333333333333322100 0 00001122222111111111 1334444444443
Q ss_pred HHHHHHHHHHHhheeeeeecCCCCCCC-CCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcccc
Q 015344 258 IGAITAVTYSTMVWVLSVSQPRPPNIS-YEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPM 336 (408)
Q Consensus 258 i~~~~~l~y~~ii~~~~i~~g~~~~~~-~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m 336 (408)
+..+..+...++..+..+........+ +.+... .......+..++....++|.|-..+...-+|+ |||++. .
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r~-i 234 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNGNLFAPFNP--GGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKRT-I 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCccc--ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCcccc-c
Confidence 333322221111111111111111011 110000 11233468888999999999999999999999 567554 5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 015344 337 WRGAKVAYLFIAMCLFPVAIGGFWAYGN 364 (408)
Q Consensus 337 ~k~v~~s~~i~~~~Y~~vgi~GYlaFG~ 364 (408)
.|++..++.+++++|+...+.-....++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 6999999999999999988777666654
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.07 E-value=0.00011 Score=74.83 Aligned_cols=277 Identities=14% Similarity=0.135 Sum_probs=150.7
Q ss_pred cCCCcHHHHHHHHHhhhhhhhh-chhHHHHHhhChhHHHHH-HHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILS-LTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~Gi-LsLP~Afa~~G~v~Giil-lil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
+|+.+.+.--+.-+...||+|. |+--.+.+.+| +++++ -++.+++.+.-+..|.|...+.+. ..++.+.+++.+
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~--~gSF~~~a~~~l 87 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPV--SGSFSDYARKYL 87 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHh
Confidence 4667778888888999999996 45667888888 44443 466666666667777776543333 349999999999
Q ss_pred CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHH----hccCCCchhhH-
Q 015344 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIV----LSQLPNLNSIA- 253 (408)
Q Consensus 179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~----L~~l~~l~~L~- 253 (408)
|+++|....+.--... .-++++-+.-++..++. +.+ + ...|+....++.++ |...|.+.++-
T Consensus 88 G~~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~-----WfP-----~--vP~Wv~al~~~~l~~~~NL~sVk~FGE~Ef 154 (462)
T COG1113 88 GPWAGFLTGWTYWFFW-VLVGIAELTAIGIYLQF-----WFP-----D--VPQWVFALAAVVLLLAVNLISVKVFGELEF 154 (462)
T ss_pred cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----hcC-----C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877665322211 22344444444433332 322 1 13554433332222 22344455544
Q ss_pred HHHHHHHHHHHHHHHhheee--eeecCCCCCCCCCCCCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344 254 GLSLIGAITAVTYSTMVWVL--SVSQPRPPNISYEPLSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (408)
Q Consensus 254 ~vS~i~~~~~l~y~~ii~~~--~i~~g~~~~~~~~~~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~ 329 (408)
|++++=++..+.+.++.+++ ....+......++...+ +--+..+.+++.++-+.+|||.|...+=---+|- |
T Consensus 155 WfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~ 230 (462)
T COG1113 155 WFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----K 230 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----c
Confidence 33433333222222111111 11111111111111111 2234567899999999999999998888888888 5
Q ss_pred CCCccccchhhHHHHH-----HHHHHHHHHHHHHHHhcCCCchh---hhcCCCCchhHHHHHHHHHHHHHHhhhccccc
Q 015344 330 HPAHVPMWRGAKVAYL-----FIAMCLFPVAIGGFWAYGNLVST---LNAKAHNKFTIGKKKELLDVLAYVEKCRKSQL 400 (408)
Q Consensus 330 ~P~~~~m~k~v~~s~~-----i~~~~Y~~vgi~GYlaFG~~v~~---il~n~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 400 (408)
+|++. +.|++..-.. -+..+.+++.+.-|-.++++.++ ++...+-| +.....|.+.+.++..-|.+..+
T Consensus 231 dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~-~Aa~i~N~VVLtAa~S~~NSgly 307 (462)
T COG1113 231 DPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIP-FAAGIMNFVVLTAALSALNSGLY 307 (462)
T ss_pred ChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCc-ccccceeEEEeechhhccccccc
Confidence 67653 4466543333 33344455666777777776666 33344322 22233333344455555554443
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.00 E-value=0.0024 Score=66.72 Aligned_cols=253 Identities=12% Similarity=0.070 Sum_probs=119.4
Q ss_pred cCCCcHHHHHHHHHhhh-hhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 101 SRNGNAHYAAFHNLNAG-VGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~-iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
+|+-+.++....-++.+ +|.|+.+++ .+..++|- ..+...++.++..+....-+.|.....|.. -....-+++.+
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a--GG~Y~~~~~~~ 88 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS--GAIYQWSRRMG 88 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCHHHHHHHHc
Confidence 36677777776666653 899999977 55566665 344445555555555566666654433322 14445567889
Q ss_pred CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHH---HhCCCCCCCCCc-chHHHHHHHHHHHHhc--cCCCchhh
Q 015344 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQI---VCGPLCSSNPLT-TVEWYLVFTSLCIVLS--QLPNLNSI 252 (408)
Q Consensus 179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~---~~~~~~~~~~l~-~~~~~ii~~~v~i~L~--~l~~l~~L 252 (408)
|+.++.+..+...+....+ +.+........+..+... ...+........ ...+.+...+ .+++. -+...|..
T Consensus 89 g~~~gf~~gW~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~in~~g~k~~ 166 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVT-AAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVL-LVLTTVINCIGVEWM 166 (475)
T ss_pred CccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHH-HHHHHHHHHhhhhHH
Confidence 9988877766443322111 112122222222222110 110100000000 0112111111 11111 12233444
Q ss_pred HHHHHHHHHHHHHHHHhheeeeeecCCC-CCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCC
Q 015344 253 AGLSLIGAITAVTYSTMVWVLSVSQPRP-PNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHP 331 (408)
Q Consensus 253 ~~vS~i~~~~~l~y~~ii~~~~i~~g~~-~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P 331 (408)
+++..+..+..+...+++++..+..... +...++.............+..+.-...|+|.|-..+..+-+|+ |||
T Consensus 167 ~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP 242 (475)
T TIGR03428 167 SRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KNP 242 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cCc
Confidence 4444333222111111111111111111 11111100000011112345556667789999999999999999 578
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 015344 332 AHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363 (408)
Q Consensus 332 ~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG 363 (408)
+|. ..|++..+..++.++|+.+-+......+
T Consensus 243 ~r~-iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 243 RRV-APRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred chh-hhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 653 5689998888877766665544444334
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.90 E-value=0.0016 Score=68.38 Aligned_cols=238 Identities=13% Similarity=0.163 Sum_probs=116.5
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLY-TLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~y-t~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+-+.++-+...+++++|.+ .+|.+++..|.. +++..++.+++... ......|+....+.. .-.-..-.++++|
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~-aGG~Y~w~~~~~G 81 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDE-KGGIYSWMNKSVG 81 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcHHHHHHHHcC
Confidence 467899999999999999975 669889988864 44444444444332 233355554322211 1144456678899
Q ss_pred ccchhhHHHHHHHH---HHhhhh------hHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHH---HHhccCC
Q 015344 180 ERLGVWLALFPTVY---LSAGTA------TTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLC---IVLSQLP 247 (408)
Q Consensus 180 ~~~g~~~~~~~~~~---l~~G~~------iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~---i~L~~l~ 247 (408)
++++.+..+..... ...+.+ .++.++ +.......+. ..........++.++. +-+.-.+
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHF--------LGLNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhhhhh--------hcccchHHHHHHHHHHHHHHHHHHcc
Confidence 99887544321110 000010 011111 1110000000 0011111111111111 1111245
Q ss_pred CchhhHHHHHHHHHHHH----HHHHhheeeeeecC-CCC-CCCCCCCC-C-CCCcCcHHHHHHHHHHHHHhhccccchHH
Q 015344 248 NLNSIAGLSLIGAITAV----TYSTMVWVLSVSQP-RPP-NISYEPLS-S-ASPAATVFSVMNALGIIAFAFRGHNLAME 319 (408)
Q Consensus 248 ~l~~L~~vS~i~~~~~l----~y~~ii~~~~i~~g-~~~-~~~~~~~~-~-~~~~~~~~~~~~algii~FAf~~h~vv~~ 319 (408)
.++..+++.-++.+..+ ...++..+..+..+ ... +.++.... . ........++..++....|+|.|...+..
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 56666665543322111 01111101111112 111 11100000 0 00111123577778889999999999999
Q ss_pred HHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHH
Q 015344 320 IQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAI 356 (408)
Q Consensus 320 I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi 356 (408)
.-+|+ |||++ ...|++..+...+.++|+...+
T Consensus 233 ~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 233 LVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHH
Confidence 99999 57765 3569999999989999887643
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.83 E-value=0.0036 Score=65.41 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 015344 299 SVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363 (408)
Q Consensus 299 ~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG 363 (408)
++..++-...|+|.|-......-+|+ |||+| .+.|++..+..+..++|+...+.-+...+
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEI----ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhc----CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566666789999999999999999 57865 46688888877766555444333333333
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.69 E-value=0.00036 Score=72.80 Aligned_cols=238 Identities=17% Similarity=0.157 Sum_probs=126.4
Q ss_pred Hhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHHHHHH
Q 015344 114 LNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTV 192 (408)
Q Consensus 114 ~~~~iG~GiLs-LP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~~~~~ 192 (408)
+..++|+|+.. .+.+..+.|....++..++.+++.+.++.-+.+.....+ +.-.+.+.+++.+|+..|....+...+
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p--~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP--SAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc--cccchhhhhhhccCCcCCceeeHHHHH
Confidence 45678888765 668899999876777778888888777777777765443 233677788899999888766554221
Q ss_pred HHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHH----HHHHHHHHHHhcc--CCCchhhHH-HHHHHHHHHHH
Q 015344 193 YLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEW----YLVFTSLCIVLSQ--LPNLNSIAG-LSLIGAITAVT 265 (408)
Q Consensus 193 ~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~----~ii~~~v~i~L~~--l~~l~~L~~-vS~i~~~~~l~ 265 (408)
.. .-.........+..++.. +. ..+ ......| .+++.+++..+.. .|...+... +..+-.+..+.
T Consensus 85 ~~-~~~~~~~~~~~~~~~~~~-~~-~~~-----~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~ 156 (478)
T PF00324_consen 85 SY-IAAIAAEATAAGSFLQFW-GY-FPG-----LPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIA 156 (478)
T ss_pred HH-HHHHHhhhhhhhhhhccc-cc-ccc-----ccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhh
Confidence 11 111111222222222211 00 000 0001112 2222222222221 233333222 22222211111
Q ss_pred HHHhheeeeeecCCCCCCC-CC-C------CCC---CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 015344 266 YSTMVWVLSVSQPRPPNIS-YE-P------LSS---ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV 334 (408)
Q Consensus 266 y~~ii~~~~i~~g~~~~~~-~~-~------~~~---~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~ 334 (408)
+.+..++.....+...+.+ +. + ..+ +....++.++..++...+|+|.|-..+...-+|. |+|+|
T Consensus 157 ~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k- 231 (478)
T PF00324_consen 157 FIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK- 231 (478)
T ss_pred hhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh-
Confidence 1111101111111111110 00 0 000 1112346789999999999999999999999999 57865
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 015344 335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV 366 (408)
Q Consensus 335 ~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v 366 (408)
.+.|++..++..+.++|+......-...+.+-
T Consensus 232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 46799999999999999887665545554433
No 50
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.31 E-value=0.075 Score=55.08 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=92.0
Q ss_pred CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCC-CCCCcch--HHHHHHHHHHHHhc
Q 015344 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCS-SNPLTTV--EWYLVFTSLCIVLS 244 (408)
Q Consensus 168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~-~~~l~~~--~~~ii~~~v~i~L~ 244 (408)
.++..+.|..||+++.++..++.. ...+|-...-..++++.+..+++...++.-. ..+++.. .+++++.++.+++.
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~-i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRI-VMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 378889999999987777666544 4457888888888998888877765432000 0111112 22233333333333
Q ss_pred cCCCchh---hHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHH-HhhccccchHHH
Q 015344 245 QLPNLNS---IAGLSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIA-FAFRGHNLAMEI 320 (408)
Q Consensus 245 ~l~~l~~---L~~vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~-FAf~~h~vv~~I 320 (408)
.+.-.+- +.+.+....+..+.+. ++...-..|..+-.+.. ...........+..++...+ +.-..-.+.+..
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~g~~~~~~~~--~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dy 230 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGML--IWALSKAHGKGPLGELT--GTLHGSTGAWAFLYALSLVIGSFATWATNAPDF 230 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCCCccccCC--CCCCcchhHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 3333333 3333333222222211 11111111111111110 00011223445555555533 222345577888
Q ss_pred HhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHh----cCCCch
Q 015344 321 QATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWA----YGNLVS 367 (408)
Q Consensus 321 ~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYla----FG~~v~ 367 (408)
.+.+| ++++.. +....++.........+|+.+-.+ +|+...
T Consensus 231 sRy~~----~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~ 275 (442)
T TIGR00800 231 TRFGK----SKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYW 275 (442)
T ss_pred hhhcC----CccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 88884 233222 445556666666666666666655 876543
No 51
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.27 E-value=0.016 Score=57.10 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhhhhhhch---hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccch
Q 015344 107 HYAAFHNLNAGVGFQALL---LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLG 183 (408)
Q Consensus 107 ~~a~f~l~~~~iG~GiLs---LP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g 183 (408)
.+-.|-.+..++|+|.=+ .=.-|.+-||. |+...++++++-..++.++.+...+. + ..+|+|+-++.+|++++
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f-~--a~~y~~~~~~v~~~~~~ 81 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF-N--ATSYREILKYVSGPKFA 81 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh-c--ccchHHHHHHHhhHHHH
Confidence 344566777899999766 22345566655 66666777777777777777765433 2 34899999999999999
Q ss_pred hhHHHHHHHHHHhhhhhHhHHhhhhhHHHH
Q 015344 184 VWLALFPTVYLSAGTATTLILLGGETMKMF 213 (408)
Q Consensus 184 ~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l 213 (408)
|+.+...++.+ +++++.-+--.|..+++.
T Consensus 82 ki~d~~iif~l-f~~~vVM~AGags~~~e~ 110 (349)
T COG3949 82 KIIDIIIIFFL-FSTAVVMLAGAGSLLEEM 110 (349)
T ss_pred HHHHHHHHHHH-HHHHHHHhccchhHHHHH
Confidence 99998777776 777776665556565554
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.26 E-value=0.016 Score=61.13 Aligned_cols=50 Identities=6% Similarity=-0.074 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHH
Q 015344 301 MNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVA 355 (408)
Q Consensus 301 ~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vg 355 (408)
...+-.++|+|.|-..+...-+|+ |+|+| .+.|++..+..++.++|+...
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence 344445689999999999999999 57865 356999998888888887533
No 53
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.15 E-value=0.026 Score=59.01 Aligned_cols=232 Identities=13% Similarity=0.128 Sum_probs=138.1
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhc-hhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQAL-LLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiL-sLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+...+.-.+.-+...||+|++ +.-.+.+++|=...++..++++.+.+..+.-|.|+.-..|- ..+|...+.+..+
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~--sGsF~~ya~rfvd 120 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV--SGSFSTYATRFVD 120 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCchhhhhhhhcC
Confidence 46677778888889999999986 47799999998877777888888888888888887644441 2368888888877
Q ss_pred ccchhhHHHHHHHHHHhhhhhH-hHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc--cCCCchhhH-HH
Q 015344 180 ERLGVWLALFPTVYLSAGTATT-LILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS--QLPNLNSIA-GL 255 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~ia-YiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~--~l~~l~~L~-~v 255 (408)
+-+|.-+.+. +... .-+.++ -++..+..++ .+.+ ...+...|..+|.++++.+- -.|-+.+.- |+
T Consensus 121 pa~GFa~gWn-Yw~~-w~v~~~~El~aa~~vi~-----yW~p----~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~ 189 (541)
T COG0833 121 PAFGFALGWN-YWLN-WAVTLPLELTAASLVIQ-----YWFP----DTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWF 189 (541)
T ss_pred chHHHHHHHH-HHHH-HHHHhhHHHHHHHHhhh-----hhcC----CCCChHHHHHHHHHHHHHHHHhcccccceehHHH
Confidence 7655444331 1111 111111 1222222211 1211 12345678888766555543 245544433 34
Q ss_pred HHHHHHHHHHHHHhheeeeeecCCCCC-----CCCCCCC-CCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344 256 SLIGAITAVTYSTMVWVLSVSQPRPPN-----ISYEPLS-SASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (408)
Q Consensus 256 S~i~~~~~l~y~~ii~~~~i~~g~~~~-----~~~~~~~-~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~ 329 (408)
|.+=+++.+.+.++.+++ .-|..++ .+|- + +..-...+.++...+-+..|+|.|.-++----.|- +
T Consensus 190 s~iKV~~ii~Fii~gii~--~~Gg~~~~~~ig~~yw--~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~ 261 (541)
T COG0833 190 SSIKVLTIIGFIILGIII--ICGGGPTHGYIGFNYW--HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----E 261 (541)
T ss_pred HHHHHHHHHHHHHHHHHH--hcCCCCCCCCcceeee--cCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----C
Confidence 444444333333322111 1222221 1221 1 12223457788899999999999998877777777 5
Q ss_pred CCCccccchhhHHHHHHHHHHHHHH
Q 015344 330 HPAHVPMWRGAKVAYLFIAMCLFPV 354 (408)
Q Consensus 330 ~P~~~~m~k~v~~s~~i~~~~Y~~v 354 (408)
+|++ .+.|+++..+.=+.++|+..
T Consensus 262 nP~K-~iPkAik~vfwRIl~FYi~s 285 (541)
T COG0833 262 NPRK-SIPKAIKQVFWRILLFYILS 285 (541)
T ss_pred Cchh-hhHHHHHHHHHHHHHHHHHH
Confidence 7765 36688888777777777643
No 54
>PRK11375 allantoin permease; Provisional
Probab=97.04 E-value=0.22 Score=52.27 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHH
Q 015344 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIV 217 (408)
Q Consensus 168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~ 217 (408)
.++.-+.|..||+++.++..++..+...+|-...-..++++.+..+++..
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i 138 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKI 138 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999998777766554222234555555667788877776554
No 55
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.67 E-value=0.023 Score=60.51 Aligned_cols=245 Identities=15% Similarity=0.109 Sum_probs=125.2
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLs-LP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+.+.+.-.+.-+.++||+|++- ...+.++.|=..-++..++.++..+.+..-+.|..-..|.. ..++-..+.+.+|
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~-aGs~~~ya~~~i~ 107 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS-AGSFYTYAYRFVG 107 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc-cccceeeeeeeeC
Confidence 456777777777788999999987 55778888866556666767666666666666654333321 1134444456667
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHH-HHhCCCCCCCCCcchHHHHHHHHHHHH--hccCCCchhhHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQ-IVCGPLCSSNPLTTVEWYLVFTSLCIV--LSQLPNLNSIAGLS 256 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~-~~~~~~~~~~~l~~~~~~ii~~~v~i~--L~~l~~l~~L~~vS 256 (408)
+-++..+.+-..+.- +-.+-+-....+..++.... ...... ....+...|+.++.++.++ +...+-+-.....+
T Consensus 108 e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w~~~~~~~~~--~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~ 184 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYWTGASLIGIL--VDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSL 184 (554)
T ss_pred cHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhcccccccc--ccCCCCCccHHHHHHHHHHHHHHHHhhccceeehH
Confidence 765554443221111 11111222222333333210 000000 0011123344333222221 22233322222221
Q ss_pred H-HHHHHHHHHHHhheeeeeecCC-CCC-CCCCC---CCC--CCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCC
Q 015344 257 L-IGAITAVTYSTMVWVLSVSQPR-PPN-ISYEP---LSS--ASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTF 328 (408)
Q Consensus 257 ~-i~~~~~l~y~~ii~~~~i~~g~-~~~-~~~~~---~~~--~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~ 328 (408)
. .-+++.+.+.++.+++ .-|- ..+ .+|.+ +++ .-.+..+.++..++-+..|+|.|.-.+-..-+|-
T Consensus 185 ~~~kvl~~v~~~Il~iVi--~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~---- 258 (554)
T KOG1286|consen 185 AFNKILTAVGFIILAIVI--IAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA---- 258 (554)
T ss_pred HHHHHHHHHHHHHhheee--ecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----
Confidence 1 1122222222222221 1221 111 12221 111 1112336789999999999999999998888888
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHH
Q 015344 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAI 356 (408)
Q Consensus 329 ~~P~~~~m~k~v~~s~~i~~~~Y~~vgi 356 (408)
|||+|. ..++++.++..++++|+...+
T Consensus 259 kNP~k~-IP~ai~~s~~ri~~~Yi~~~~ 285 (554)
T KOG1286|consen 259 KNPRKA-IPKAIKQSLLRILLFYILSSI 285 (554)
T ss_pred cCCccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 678753 568999999999999988765
No 56
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=96.52 E-value=0.23 Score=51.75 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=39.2
Q ss_pred HHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 015344 306 IIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGG 358 (408)
Q Consensus 306 ii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~G 358 (408)
.+.|+|.|-..+...-+|+ |||+|. ..|++..+..++.++|+...+.-
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~r~-iPrAi~~~~~~~~~~y~l~~~~~ 249 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPDKN-YPIAILIAALGTVLIFVLGTLAI 249 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCcccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999 577653 66999999999999998765443
No 57
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=95.82 E-value=2 Score=43.73 Aligned_cols=226 Identities=14% Similarity=0.171 Sum_probs=109.9
Q ss_pred HHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCc-cCCHHHHHHHHhCccchh
Q 015344 106 AHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKR-YNRYVELAQAAFGERLGV 184 (408)
Q Consensus 106 ~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r-~~sY~el~~~~~G~~~g~ 184 (408)
|....+++.+-..|+.... .++..+++..++..++...-..+.... |.| ..++.-+.|..||+++.+
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~-----G~~~Gl~~~v~sR~~FG~~Gs~ 74 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVI-----GADTGLSAMGSLKLSLGSKGSV 74 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHh-----hcccCcCHHHHHHHHHccchhh
Confidence 4555666666666653211 555555554444443332222222222 222 247999999999998777
Q ss_pred hHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Q 015344 185 WLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAV 264 (408)
Q Consensus 185 ~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~~~l 264 (408)
+..++. ...+.|--..-...+++.+..+.+...+. .....+.+++.++.++.. +...+.++++..++....+
T Consensus 75 ~~~~l~-~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~ 146 (386)
T TIGR02358 75 LPSLLN-LLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLL 146 (386)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 665543 33446666667777888888877543221 112334444444333333 3345556666555544322
Q ss_pred HHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHH-HhhccccchHHHHhhCCCCCCCCCccccchhhHHH
Q 015344 265 TYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIA-FAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVA 343 (408)
Q Consensus 265 ~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~-FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s 343 (408)
..++...+..+.+..... ... .+. . .. +..++...+ +.-......+...+.. |++++ .......+
T Consensus 147 i~~~~~~~~~~~~~~~~~-~~~--~~~-~-~s---~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~G 212 (386)
T TIGR02358 147 IATLWLLVVVFSKADLSE-LWN--RAG-D-MS---FAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVLG 212 (386)
T ss_pred HHHHHHHHHHHhccchhh-hcC--CCC-C-cc---HHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHHH
Confidence 211111111122211111 111 011 1 11 222222211 1011223355666655 22322 34556667
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 015344 344 YLFIAMCLFPVAIGGFWAYGNL 365 (408)
Q Consensus 344 ~~i~~~~Y~~vgi~GYlaFG~~ 365 (408)
+.+...+...+|...-.+.|+.
T Consensus 213 ~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 213 YFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 7777777778888777777653
No 58
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=95.31 E-value=0.45 Score=49.05 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHH----HHHHHHHHHHHHHHHHHHHHchhhcCCCccCCH-----H
Q 015344 102 RNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWG----ILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRY-----V 171 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~G----iillil~~~l~~yt~~lLv~~~~~~~g~r~~sY-----~ 171 (408)
++-|.+++.+..+.+.+|+| ++++|.|.+..| -.+ .+..++.+...+.-..+..+..+. ++ ..+| .
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~-~~--~g~~~GGP~y 120 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER-DA--DGVFRGGPMY 120 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee-CC--CCCEecChHH
Confidence 34788999999999999998 999999977766 434 333333333333334444444431 11 1235 6
Q ss_pred HHHHHHhCccchhhHHHH
Q 015344 172 ELAQAAFGERLGVWLALF 189 (408)
Q Consensus 172 el~~~~~G~~~g~~~~~~ 189 (408)
.+-+...|||.+.++.++
T Consensus 121 yi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 121 YIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHhCccHHHHHHHHH
Confidence 777777777656555443
No 59
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=94.91 E-value=5.2 Score=41.90 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=72.0
Q ss_pred ccCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHH--HHHHHHH-HHHHHHHHchhhcCCCccCCHHHHHH
Q 015344 100 ESRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLT--IAYCWQL-YTLWILVQLHEAVPGKRYNRYVELAQ 175 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giilli--l~~~l~~-yt~~lLv~~~~~~~g~r~~sY~el~~ 175 (408)
..|+.+++...+.+..+.+|+ ..++.|-...+.|+.+-...+. ....+.. +-...+.+..++ .+..|+.|.-+
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~l~ 115 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YNAVTLNDMLR 115 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHH
Confidence 356777788888887776665 6677886666667642111111 1111111 111112222222 23459999999
Q ss_pred HHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHH
Q 015344 176 AAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGL 255 (408)
Q Consensus 176 ~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~v 255 (408)
+-||++..++...+..+...++...+.+.-.+..++.+++ ++...-+++.+++.++...+--++...+.
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-----------i~~~~~iii~~~iv~iYt~~GGl~av~~T 184 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-----------ISYETGLLIFGITVALYTAFGGFRAVVLT 184 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999765554443332222233333334444444444321 11122233334444555566677776665
Q ss_pred HHHH
Q 015344 256 SLIG 259 (408)
Q Consensus 256 S~i~ 259 (408)
-.+=
T Consensus 185 D~iQ 188 (483)
T PRK09442 185 DALQ 188 (483)
T ss_pred HHHH
Confidence 5443
No 60
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=94.52 E-value=6.8 Score=41.29 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=64.6
Q ss_pred CCCcccccccCCCcHHHHHHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHHchhhcCCCcc
Q 015344 92 QDAWLPITESRNGNAHYAAFHNLNAGVG-FQALLLPVAFAFLGWSWGILSLT---IAYCWQLYTLWILVQLHEAVPGKRY 167 (408)
Q Consensus 92 ~d~~~~~~~~r~~s~~~a~f~l~~~~iG-~GiLsLP~Afa~~G~v~Giilli---l~~~l~~yt~~lLv~~~~~~~g~r~ 167 (408)
.|||.. ..|+-..+-..+...-+.++ .-.+++|-.....|+....+.+. +..+...+-..-+.+..+ ..+.
T Consensus 30 ~~dy~~--~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~---~~~~ 104 (493)
T COG0591 30 LEDYFL--GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK---ARGA 104 (493)
T ss_pred hHHHhc--cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCC
Confidence 345533 33555555555666666666 88999999888899864333322 222233333333333332 2335
Q ss_pred CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHH
Q 015344 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMK 211 (408)
Q Consensus 168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~ 211 (408)
.|..|.-++=||++..|.+..+..+...++-+...++-++..++
T Consensus 105 ~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~ 148 (493)
T COG0591 105 TTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLS 148 (493)
T ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 69999999999954455544333333335555555555555543
No 61
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=93.92 E-value=2.2 Score=42.95 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=66.0
Q ss_pred CcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHH----HHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 104 GNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIA----YCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 104 ~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~----~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
.+.+.-..|=..++-|+|-+.=|..-++.||+++.+-+++. +.+--|...++. . .++-.|..|++++..|
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S-v-----R~~G~Si~~i~~~~lG 125 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS-V-----RHKGKSIGEIAGKYLG 125 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh-h-----cCCCccHHHHHHHHHH
Confidence 34456677778899999999999888999999777655433 334444433321 1 1112499999999999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETM 210 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L 210 (408)
|+.++++.++..+.+ .-...++.....+.+
T Consensus 126 ~~~~~lf~~f~~~~l-ilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 126 KRAKKLFLIFIFFLL-ILVIAVFADVVANTF 155 (376)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 998887776655444 444555555444443
No 62
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.08 E-value=14 Score=39.21 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhhc-CCCC
Q 015344 297 VFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNA-KAHN 375 (408)
Q Consensus 297 ~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~il~-n~~~ 375 (408)
-+.+..++-.-++.+.|--....+-+|- |++++. -.|++..+..+..++=..+-+.-..+-++|.+.+++ +...
T Consensus 251 G~afil~f~~~~wt~sGyDa~~H~aEE~----~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~ 325 (550)
T KOG1289|consen 251 GWAFILGFFNPAWTMSGYDAAAHMAEET----KNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQ 325 (550)
T ss_pred hHHHHHhhccceeEEeccCchHHHHHHh----cchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCC
Confidence 3566666777777888888888899998 455543 347777666666555444444444455655555444 4343
Q ss_pred c
Q 015344 376 K 376 (408)
Q Consensus 376 ~ 376 (408)
|
T Consensus 326 p 326 (550)
T KOG1289|consen 326 P 326 (550)
T ss_pred h
Confidence 3
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=92.58 E-value=15 Score=38.29 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=75.0
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHH----HchhhcCCCccCCHHHH
Q 015344 99 TESRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILV----QLHEAVPGKRYNRYVEL 173 (408)
Q Consensus 99 ~~~r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv----~~~~~~~g~r~~sY~el 173 (408)
...|+.+++...+.+..+.+|++ .++.|-...+.|+.+..+.... ....+.+..++. +..++ .+..|..|.
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~ 112 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQ-VPTGYFVLGVLGKKFAIISRK---YNAITINDV 112 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---cCCccHHHH
Confidence 33577888888888888888765 4568877777786432221110 011111212222 11221 234599999
Q ss_pred HHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhH
Q 015344 174 AQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIA 253 (408)
Q Consensus 174 ~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~ 253 (408)
-++-||++..++...+..+...++..++.+.-.+..++.+++ ++...-+++.+++.+....+--++...
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-----------i~~~~~iii~~~iv~iYt~~GG~~av~ 181 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-----------LSYLTALFIFSSSVLIYTTFGGFRAVA 181 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999765555433333222244444444444444444321 111222333333344455566777777
Q ss_pred HHHHHH
Q 015344 254 GLSLIG 259 (408)
Q Consensus 254 ~vS~i~ 259 (408)
+...+=
T Consensus 182 ~td~iQ 187 (471)
T TIGR02119 182 LTDAIQ 187 (471)
T ss_pred HHHHHH
Confidence 765443
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=92.22 E-value=15 Score=37.45 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCc
Q 015344 102 RNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGE 180 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~ 180 (408)
|+-+++...+.+..+.+|+ ..++.|-...+.|+..... .....+.......+..+..++ .+..|..|.-+.-||+
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFY-ELGALVLLIILGWLFVPIFIN---NGAYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---cCCCchhHHHHHHhCc
Confidence 5666777777777666654 5667887666677542221 122222222233334333322 2256999999999998
Q ss_pred cchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHH
Q 015344 181 RLGVWLALFPTVYLSAGTATTLILLGGETMKMF 213 (408)
Q Consensus 181 ~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l 213 (408)
+..+.+..+..+...+....+.+.-.+..++.+
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~ 111 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELI 111 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555433322222444555555555555444
No 65
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=91.35 E-value=1.8 Score=44.59 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=53.3
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAF--LGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~--~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
+|+.+.++-+..-....+....+.+-..... .++..+++.+++..++...-..++..... +.| .++..++|..|
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~G---l~~~v~sR~~F 81 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTG---LPTMVLSRASF 81 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC------HHHHTTTTS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccC---CCchhcchhcc
Confidence 4555554444443444443333333322222 23344444444444433322222222221 112 47888999999
Q ss_pred CccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHH
Q 015344 179 GERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQI 216 (408)
Q Consensus 179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~ 216 (408)
|.++.++..++.. ..++|-...-..+.++.+..+.+.
T Consensus 82 G~~Gs~l~~~l~~-i~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 82 GYRGSKLPSLLRA-ISAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp -TTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9987666655433 334677777777888888887654
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=91.22 E-value=19 Score=36.79 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=26.8
Q ss_pred CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHH
Q 015344 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKM 212 (408)
Q Consensus 168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~ 212 (408)
.++.-++|..||.++.++..++.. ...+|-...-..+.++.+..
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~-i~~igW~av~~~~~~~~l~~ 114 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLG-FTQVGWFGVGVAMFAIPVVK 114 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHH
Confidence 489999999999987776655433 23344444444444444443
No 67
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=89.69 E-value=28 Score=36.20 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=86.7
Q ss_pred HHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--CC
Q 015344 170 YVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--LP 247 (408)
Q Consensus 170 Y~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l~ 247 (408)
=..++|+.||.+++++..... ...++|-...-.+..++. .. ..+ ..+...|++++++++.+... .|
T Consensus 83 qmi~sR~~fG~~Gs~l~sll~-~~~~iGW~~v~~~l~~~a---~~---~~~-----~~~~~~~ili~g~l~~l~~ifG~r 150 (442)
T COG1457 83 QMILSRYPFGVKGSILPSLLN-GITLIGWFGVNVILSGIA---IG---SGT-----GLPVWAGILIIGVLMTLVTIFGYR 150 (442)
T ss_pred hheeecccccchhHHHHHHHH-HHHHhhHHHHHHHHhccc---cc---cCC-----CCcHHHHHHHHHHHHHHHHHHhHH
Confidence 345678899998776655543 333477776666666665 11 111 22345566666655444332 34
Q ss_pred CchhhHHHHHHHHHHHHHHHHhheeeeee-cCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhh-ccccchHHHHhhCC
Q 015344 248 NLNSIAGLSLIGAITAVTYSTMVWVLSVS-QPRPPNISYEPLSSASPAATVFSVMNALGIIAFAF-RGHNLAMEIQATMP 325 (408)
Q Consensus 248 ~l~~L~~vS~i~~~~~l~y~~ii~~~~i~-~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf-~~h~vv~~I~~~M~ 325 (408)
-++.+.+++....+..+.|.+.. .+. ++..... +. + .+.++.++..++...+=.+ ..-.......+-+|
T Consensus 151 ~l~~l~~~a~~~~~~lf~~l~~~---~~~~~~~~~~~-~~--~---~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~ 221 (442)
T COG1457 151 ALHKLERIAVPLLLLLFLYLLAL---LFRSKGGLDAL-WV--K---GPTSPLSFLSALSLVIGSFASWGPYAADYSRYAP 221 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhccccccee-ec--c---CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcC
Confidence 45555555544433333322211 111 2211111 11 1 1223344544444333222 34455666777774
Q ss_pred CCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCc-hh-hhcCCC
Q 015344 326 STFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLV-ST-LNAKAH 374 (408)
Q Consensus 326 ~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v-~~-il~n~~ 374 (408)
+ ++| ++.......+......+-..+|...-.+=|+.- .. +.+.+.
T Consensus 222 ~--~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G 268 (442)
T COG1457 222 S--PTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG 268 (442)
T ss_pred C--Cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence 3 222 111123334445556666677888877877766 22 444443
No 68
>PRK15015 carbon starvation protein A; Provisional
Probab=89.41 E-value=5.3 Score=43.19 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHH----HHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchh
Q 015344 109 AAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYC----WQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGV 184 (408)
Q Consensus 109 a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~----l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~ 184 (408)
-.-|=..++-|+|-+.=|.--++.||+++.+-+++..+ +.-|..... +- .++-.|..|++++..|++.+.
T Consensus 88 LfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~---S~---R~~GrSig~ia~~~iG~~~~~ 161 (701)
T PRK15015 88 LFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV---ST---RRDGRSLGELVKEEMGPTAGV 161 (701)
T ss_pred hhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheee---ee---cCCCccHHHHHHHHhhHHHHH
Confidence 44566779999999999999999999999886554433 222221111 11 112249999999999998777
Q ss_pred hHHHHHHHHH
Q 015344 185 WLALFPTVYL 194 (408)
Q Consensus 185 ~~~~~~~~~l 194 (408)
++.++..+++
T Consensus 162 lfli~i~~il 171 (701)
T PRK15015 162 IALVACFMIM 171 (701)
T ss_pred HHHHHHHHHH
Confidence 6655444443
No 69
>PRK12488 acetate permease; Provisional
Probab=87.33 E-value=45 Score=35.66 Aligned_cols=145 Identities=10% Similarity=0.112 Sum_probs=72.3
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHHH-HHHHHHchhhcCCCccCCHHHHHHH
Q 015344 99 TESRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYT-LWILVQLHEAVPGKRYNRYVELAQA 176 (408)
Q Consensus 99 ~~~r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~Giillil~~~l~~yt-~~lLv~~~~~~~g~r~~sY~el~~~ 176 (408)
...|+.+++...+.+..+.++++ .++.|-.....|+.. .... +...+.+.- .+++.+-..+ .+ ..|..|.-++
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~~-~g~~~g~~~~~~~~a~~lr~-~g--~~T~~d~l~~ 138 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLYA-LGVLAGWPIILFLIAERLRN-LG--KYTFADVVSY 138 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHHH-HHHHHHHHHHHHHHHHHHHH-CC--CcchHHHHHH
Confidence 34578888888888888877766 477997777788752 2111 111122111 1223322121 13 3588898888
Q ss_pred HhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHH
Q 015344 177 AFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLS 256 (408)
Q Consensus 177 ~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS 256 (408)
=||.+..|.+..+..+...+....+.++-.+..++.++ + ++...-+++.+++.++...+--++...|..
T Consensus 139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~----g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td 207 (549)
T PRK12488 139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF----G-------ISYLYAVVIVGALMVLYVTFGGMLATTWVQ 207 (549)
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-------CCHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 88854445443322222223333333333443333332 1 111111333344444555566677766666
Q ss_pred HHH
Q 015344 257 LIG 259 (408)
Q Consensus 257 ~i~ 259 (408)
.+=
T Consensus 208 ~iQ 210 (549)
T PRK12488 208 IIK 210 (549)
T ss_pred HHH
Confidence 544
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=86.88 E-value=47 Score=35.46 Aligned_cols=86 Identities=9% Similarity=-0.014 Sum_probs=48.3
Q ss_pred cccCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHH
Q 015344 99 TESRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAA 177 (408)
Q Consensus 99 ~~~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~ 177 (408)
.-.|+-.++...+.+..+.+++ -.++.|-.....|+..-... ....+......+++.+-.++. + ..|-.|.-+.=
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~-~--~~T~~e~l~~R 104 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKF-G--KYTVPDFIGDR 104 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHC-C--CccHHHHHHHH
Confidence 3457888888888888887755 56778876666776421111 111111111223333333221 3 34778887888
Q ss_pred hCccchhhHHH
Q 015344 178 FGERLGVWLAL 188 (408)
Q Consensus 178 ~G~~~g~~~~~ 188 (408)
||++..+++..
T Consensus 105 f~s~~~~~~~~ 115 (552)
T TIGR03648 105 YYSNTARLVAV 115 (552)
T ss_pred hCCCceehhHH
Confidence 88665555543
No 71
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=85.23 E-value=57 Score=34.87 Aligned_cols=82 Identities=11% Similarity=0.100 Sum_probs=45.4
Q ss_pred cCCCcHHHHHHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 101 SRNGNAHYAAFHNLNAGVG-FQALLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG-~GiLsLP~Afa~~G~v~Giillil~~~l~~-yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
.|+..++...+.+..+.++ ...++.|-.....|+- +....+ ...+.+ ...+++.+-.++ .| ..|..|.-++=|
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr-~g--~~T~~d~l~~Rf 140 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRN-LG--RYTFADVASYRL 140 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHH-cC--CccHHHHHHHHc
Confidence 5677777777777776555 5678899777777864 222111 111221 112233332221 23 358999888888
Q ss_pred CccchhhHH
Q 015344 179 GERLGVWLA 187 (408)
Q Consensus 179 G~~~g~~~~ 187 (408)
|.+..|.+.
T Consensus 141 ~s~~~r~l~ 149 (549)
T TIGR02711 141 KQRPIRILS 149 (549)
T ss_pred CCcchhHHH
Confidence 765455543
No 72
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=84.28 E-value=42 Score=34.01 Aligned_cols=142 Identities=13% Similarity=0.034 Sum_probs=65.2
Q ss_pred cCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
.|+.+++...+.+..+.+|+ ..++.|-...+.|+..... .+...+......+++.+-..+ .+..|..|.-++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~-~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWY-AIGYAIGFLLFALFFAPRLRR---SGAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHH-HHHHHHHHHHHHHHTHHHHHH---TT--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeee-ccccchhHHHHHHHHHHhhcc---cchhhhhhhhhhhcC
Confidence 46777888888888887776 5677898888888763322 232222223333333333221 235699999999999
Q ss_pred ccc-hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHH
Q 015344 180 ERL-GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSL 257 (408)
Q Consensus 180 ~~~-g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~ 257 (408)
++. .+.+..+..+...+....+.+.-.+..++.++. ++.....++..++.++...+--++...+...
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-----------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~ 148 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-----------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDF 148 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhccc-----------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHH
Confidence 975 344433222221133333444444444333321 1122233344444445555555565555443
No 73
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=82.86 E-value=5.6 Score=40.51 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=49.0
Q ss_pred CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCC
Q 015344 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN 248 (408)
Q Consensus 169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~ 248 (408)
-..+++++.||+.++.++.+. ...-|++++++.+...++.+..+.. ..+.+.|.+++.++.+.++ .-.
T Consensus 256 ~l~~~a~~~~G~~G~~ll~i~-v~lACLtT~iGli~~~a~~f~~~~~----------k~~y~~~v~~~~l~s~~ia-~~G 323 (378)
T TIGR00796 256 ILSAYSQHLFGSLGSFLLGLI-ITLACLTTAVGLTTACSEYFHKLVP----------KLSYKTWVIVFTLFSFIVA-NLG 323 (378)
T ss_pred HHHHHHHHHcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHHHH-HhC
Confidence 567899999999766666554 4445799999999988877666522 1234566665555444444 225
Q ss_pred chhhHHHH
Q 015344 249 LNSIAGLS 256 (408)
Q Consensus 249 l~~L~~vS 256 (408)
++++-.++
T Consensus 324 l~~Ii~~~ 331 (378)
T TIGR00796 324 LTQIISIS 331 (378)
T ss_pred HHHHHHHH
Confidence 56555544
No 74
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=80.31 E-value=9.1 Score=39.60 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=52.7
Q ss_pred CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCC
Q 015344 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN 248 (408)
Q Consensus 169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~ 248 (408)
-..+++++.||+.+..++.+ ....-|+-+|++.+...+|.++++++. .+.+.|.+++.++-.+++ .-.
T Consensus 262 lL~~i~~~~~G~~G~~ll~i-iv~lACLTTaIGL~~a~a~yf~~~~~k----------isY~~~v~i~~i~S~~ia-n~G 329 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGI-IVFLACLTTAIGLISACAEYFSELFPK----------ISYKVWVIIFTIFSFIIA-NLG 329 (427)
T ss_pred HHHHHHHHHcChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc----------cChHHHHHHHHHHHHHHH-HhC
Confidence 46788999999964444444 344447899999999999888876542 234667666655555544 223
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 015344 249 LNSIAGLSLIGAITAVTYST 268 (408)
Q Consensus 249 l~~L~~vS~i~~~~~l~y~~ 268 (408)
++.+-.+|. =+..+.|-.
T Consensus 330 l~~Ii~~s~--PiL~~iYP~ 347 (427)
T PF05525_consen 330 LDQIIKISV--PILMFIYPV 347 (427)
T ss_pred HHHHHHHHH--HHHHHHhHH
Confidence 444444432 233445554
No 75
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=78.06 E-value=79 Score=32.21 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=40.2
Q ss_pred HHHhhhhhhhhchhHHH-HHhhC--hhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHH
Q 015344 112 HNLNAGVGFQALLLPVA-FAFLG--WSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLAL 188 (408)
Q Consensus 112 ~l~~~~iG~GiLsLP~A-fa~~G--~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~ 188 (408)
.+..-.+|+|.|-.|-. -.++| |..+.+..++.++..-.-... .-...| .+|.++.++ +||+.+.++.+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g---G~~~~l~~~-~g~~f~~lf~~ 74 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG---GGYDSLSAR-IGKVFGILFTV 74 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC---CCHHHHHHH-hChHHHHHHHH
Confidence 45567799999999944 44444 445555555555443333222 111112 378888765 67777776655
Q ss_pred HH
Q 015344 189 FP 190 (408)
Q Consensus 189 ~~ 190 (408)
..
T Consensus 75 ~~ 76 (378)
T TIGR00796 75 IL 76 (378)
T ss_pred HH
Confidence 43
No 76
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=77.99 E-value=14 Score=39.19 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH----HHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 104 GNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQ----LYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 104 ~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~----~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
.+.+-..-|=..++-|+|-+.=|.--++.||.+|.+-+++.+++. -|...++ +- .++-.|-.|++++-+|
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~---Sv---R~~G~Si~~ia~~~lG 125 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLML---SV---RHGGKSIGEIAGKYLG 125 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheee---ee---ccCCccHHHHHHHHhh
Confidence 334556667777899999999999999999998888665554432 2221111 11 1122489999999999
Q ss_pred ccchhhHHHH
Q 015344 180 ERLGVWLALF 189 (408)
Q Consensus 180 ~~~g~~~~~~ 189 (408)
++.+.+..+.
T Consensus 126 ~~a~~~~~~~ 135 (575)
T COG1966 126 RTAKVFFLLL 135 (575)
T ss_pred hhHHHHHHHH
Confidence 9877765543
No 77
>PRK09395 actP acetate permease; Provisional
Probab=74.93 E-value=1.2e+02 Score=32.31 Aligned_cols=81 Identities=7% Similarity=0.010 Sum_probs=44.8
Q ss_pred cCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 101 SRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~-yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
.|+..++...+.+..+.+|+ ..++.|-.....|+.. ....+ ...+.+ ...+++.+-..+ .+ ..|+.|.-+.=|
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~-~~~~g~~~~~~~~~~~~r~-~g--~~T~~d~l~~Ry 142 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSI-GFLVGWPIILFLIAERLRN-LG--KYTFADVASYRL 142 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHH-HHHHHHHHHHHHHHHHHhh-CC--CccHHHHHHHHc
Confidence 56777777777777776664 4677887777778743 21111 111211 112223322221 13 358999998889
Q ss_pred CccchhhH
Q 015344 179 GERLGVWL 186 (408)
Q Consensus 179 G~~~g~~~ 186 (408)
|++..|.+
T Consensus 143 gs~~~r~l 150 (551)
T PRK09395 143 KQGPIRTL 150 (551)
T ss_pred CCchHHHH
Confidence 86534443
No 78
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=66.53 E-value=1.8e+02 Score=30.78 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCCchh---hhcCCCCchhHH
Q 015344 350 CLFPVAIGGFWAYGNLVST---LNAKAHNKFTIG 380 (408)
Q Consensus 350 ~Y~~vgi~GYlaFG~~v~~---il~n~~~~~~~~ 380 (408)
+=+.++..++..||+..-+ ++++++...+..
T Consensus 291 igvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~ 324 (497)
T COG1953 291 IGVVVTSASYILYGETIWDPLDIVARFLSGFYAA 324 (497)
T ss_pred HHhhHHHHHHHhhCcccCCHHHHHHHhccchHHH
Confidence 3345566788999999765 888888655444
No 79
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=63.45 E-value=13 Score=39.73 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=52.7
Q ss_pred chhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhh---cCCCccCCHHHHHHHHhCccchhhHHHHHHHHHHhhhh
Q 015344 123 LLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA---VPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTA 199 (408)
Q Consensus 123 LsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~---~~g~r~~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~ 199 (408)
|=++|-..|+|...|++++.+...++..|..=..-..++ +.|- .|--++ +.+|+..|--+.++.... +.=.|
T Consensus 51 lrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yflis-~slg~efggsigiIy~f~-~aVa~ 125 (643)
T KOG2083|consen 51 LRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLIS-RSLGPEFGGSIGIIYAFA-NAVAT 125 (643)
T ss_pred hhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEEE-ecccccccchhHHHHHHH-HHHHH
Confidence 558999999999999998888877777775443322221 1111 222222 334544333333322111 23345
Q ss_pred hHhHHhhhhhHHHHHHHH
Q 015344 200 TTLILLGGETMKMFFQIV 217 (408)
Q Consensus 200 iaYiIi~~~~L~~l~~~~ 217 (408)
..|.+-.++++.++++..
T Consensus 126 am~~vgfaEsv~~l~~~~ 143 (643)
T KOG2083|consen 126 AMYVVGFAESVAHLFETE 143 (643)
T ss_pred HHhhhhHHHHHHHHHHhc
Confidence 668888999998888753
No 80
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=62.10 E-value=2.1e+02 Score=29.97 Aligned_cols=81 Identities=11% Similarity=0.004 Sum_probs=44.4
Q ss_pred ccCCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHH-chhhcC-CCccCCHHHHHHH
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQ-LHEAVP-GKRYNRYVELAQA 176 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~-~~~~~~-g~r~~sY~el~~~ 176 (408)
..|+-+++-..+.+..+.+++. .++.|-...+.|+.. ........+.......++.+ .++... +.+..|-.|.-+.
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 3577788888888877766644 567886666678753 22111111111222233332 221100 1234588899999
Q ss_pred HhCcc
Q 015344 177 AFGER 181 (408)
Q Consensus 177 ~~G~~ 181 (408)
=||++
T Consensus 113 Ryg~~ 117 (487)
T TIGR02121 113 RFNDK 117 (487)
T ss_pred HhCCC
Confidence 99965
No 81
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=61.61 E-value=1.1e+02 Score=31.59 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=51.5
Q ss_pred CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCC
Q 015344 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPN 248 (408)
Q Consensus 169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~ 248 (408)
=..+..++.||+- |+++.-.++..-|+-++++.+...+|...++... ++...|.+++++.-+.++ .-.
T Consensus 264 IL~~~s~~~fG~~-G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~----------~SY~~~v~if~i~sflva-n~G 331 (431)
T COG1114 264 ILSAYSQHLFGSY-GSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK----------LSYKTWVIIFTLISFLVA-NLG 331 (431)
T ss_pred HHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHHHH-Hhh
Confidence 3567888999995 5554333444457889999999999887776432 345778888776655554 224
Q ss_pred chhhHHHHHH
Q 015344 249 LNSIAGLSLI 258 (408)
Q Consensus 249 l~~L~~vS~i 258 (408)
++++-..|.-
T Consensus 332 L~~Ii~isvP 341 (431)
T COG1114 332 LEQIIKISVP 341 (431)
T ss_pred HHHHHHHHHH
Confidence 5666666543
No 82
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=59.29 E-value=11 Score=25.98 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCchhhhcCCC
Q 015344 339 GAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAH 374 (408)
Q Consensus 339 ~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~il~n~~ 374 (408)
+...++.+..++..+.|..-|.+||...+++-+++.
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk~LrDPfe 39 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSKELRDPFE 39 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCccccCCccc
Confidence 344556666767777888889999976554555443
No 83
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=56.42 E-value=2.2e+02 Score=30.11 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=31.7
Q ss_pred ccchHHHHhhCCCCCCCCCccccchhh--HHHHHHHHHHHHHHHHHHHHhcCCCchh---hhcCC
Q 015344 314 HNLAMEIQATMPSTFKHPAHVPMWRGA--KVAYLFIAMCLFPVAIGGFWAYGNLVST---LNAKA 373 (408)
Q Consensus 314 h~vv~~I~~~M~~~~~~P~~~~m~k~v--~~s~~i~~~~Y~~vgi~GYlaFG~~v~~---il~n~ 373 (408)
..+.|..-+-- |+|..-.....+ -+.+.+...+=++++..+|..||.+.-+ |++++
T Consensus 271 ~~N~pDFsRF~----ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 271 IVNAPDFSRFA----KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred hccCchhHhhc----CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 34556655555 456543322222 2333444444456677889999998865 66655
No 84
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=55.39 E-value=2.8e+02 Score=29.35 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=80.7
Q ss_pred CCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCC
Q 015344 168 NRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLP 247 (408)
Q Consensus 168 ~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~ 247 (408)
.++.|....=|+.+-.|++..+..+...+--.++.++-.|..+..+++. ++ ..-+++.++++++...+-
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv---------~~--~vgv~ig~ilm~~Yvv~G 172 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV---------PY--HVGVVIGGILMMVYVVLG 172 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC---------Cc--eeehhhHhHHHHHHHHhc
Confidence 4888888777776666766655433322323344444444444444321 11 111223334444444566
Q ss_pred CchhhHHHHHHHHHH-HHHHHHhheeeeeec-CCC----------CCC-CC-CCCCCCCCcCcHHHHHHHHHHHHHhhcc
Q 015344 248 NLNSIAGLSLIGAIT-AVTYSTMVWVLSVSQ-PRP----------PNI-SY-EPLSSASPAATVFSVMNALGIIAFAFRG 313 (408)
Q Consensus 248 ~l~~L~~vS~i~~~~-~l~y~~ii~~~~i~~-g~~----------~~~-~~-~~~~~~~~~~~~~~~~~algii~FAf~~ 313 (408)
-++...|+-.+=.+. .+.+.+..+.+.... |.+ +.. +. +...+.....++.++ ++...--..|
T Consensus 173 GM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~---isl~~aLm~G 249 (529)
T COG4147 173 GMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDF---ISLGFALMVG 249 (529)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHH---HHHHHHHHHc
Confidence 777778877554332 222322222221111 111 000 00 000111111222222 2222211224
Q ss_pred ccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 015344 314 HNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWA 361 (408)
Q Consensus 314 h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYla 361 (408)
..-+|.|.-.-- .-|+.|.-+|.+.++..++..+|+..-+.|+.+
T Consensus 250 TAgLPHil~RFf---Tvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 250 TAGLPHILMRFF---TVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred cCCCCeEEEEEE---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444332111 124444455889999999999999987777654
No 85
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=55.14 E-value=11 Score=26.27 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=26.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhhcCCC
Q 015344 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKAH 374 (408)
Q Consensus 336 m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~il~n~~ 374 (408)
|..+..+++.+..++..+.|..-|.+||...+++-++|.
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppSk~LrDPFe 42 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPSKELDDPFD 42 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcccccCCchh
Confidence 345666677777777777788888899986554555443
No 86
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=52.94 E-value=2.8e+02 Score=28.68 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHH
Q 015344 102 RNGNAHYAAFHNLNAGVGFQALL-LPVAFAFLGWSWGILSLTIAYCWQLY 150 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~GiLs-LP~Afa~~G~v~Giillil~~~l~~y 150 (408)
++-|.+||.+.-+.+.+|+|=++ ...|.+-.| -..++-+-+.+++.+-
T Consensus 17 g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gma 65 (416)
T PF01235_consen 17 GGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMA 65 (416)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHH
Confidence 46788999999999999999554 888888777 3345545555554443
No 87
>CHL00020 psbN photosystem II protein N
Probab=51.99 E-value=10 Score=26.03 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhhcCC
Q 015344 338 RGAKVAYLFIAMCLFPVAIGGFWAYGNLVSTLNAKA 373 (408)
Q Consensus 338 k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~il~n~ 373 (408)
.+..+++.+..++..+.|..-|.+||...+++-+++
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppSk~LrDPf 38 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPF 38 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCchhccCCch
Confidence 345566666777777777888889998655454444
No 88
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=49.19 E-value=1.4e+02 Score=31.19 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=39.4
Q ss_pred HHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhc
Q 015344 170 YVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLS 244 (408)
Q Consensus 170 Y~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~ 244 (408)
-..+..+.+|+.++.+... ....-|+-++++-+.-.++.+++.+. .+.+.|.+++.++.++++
T Consensus 267 l~~~~~~~~G~~G~~ll~i-iv~lACLTTaIGLi~a~a~~f~~~~~-----------isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAA-LIFIACLVTAVGLTCACAEFFAQYVP-----------LSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcC-----------CcHHHHHHHHHHHHHHHH
Confidence 4567788999964444443 44444688888888888877666432 234566666555555544
No 89
>PRK09950 putative transporter; Provisional
Probab=48.62 E-value=2.3e+02 Score=30.14 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=29.7
Q ss_pred ccCCHHHHHHHHhCcc----chhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHH
Q 015344 166 RYNRYVELAQAAFGER----LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQI 216 (408)
Q Consensus 166 r~~sY~el~~~~~G~~----~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~ 216 (408)
+..+.++..+-.+|++ .|++++.+.++.+-+|.+.+.- ++..++..-++.
T Consensus 165 ~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLG-lg~~qi~~gl~~ 218 (506)
T PRK09950 165 KGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLV-VTAATFTRGLSA 218 (506)
T ss_pred CCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Confidence 4457888888888853 5677777666666455554433 333444444433
No 90
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=46.17 E-value=3.2e+02 Score=28.87 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=21.2
Q ss_pred cHHHHHHHHHhhhhhhh-hchhHHHHHhhC
Q 015344 105 NAHYAAFHNLNAGVGFQ-ALLLPVAFAFLG 133 (408)
Q Consensus 105 s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G 133 (408)
+..+-.+..+...+|.| +.-.|+-..+-|
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~g 35 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENG 35 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccc
Confidence 44566778888999998 788997755554
No 91
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=45.77 E-value=3.8e+02 Score=28.13 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=44.0
Q ss_pred ccccCCCcHHHHHHHHHhhhhhhhh-chhHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHH-Hchhh-cCCCccCCHHHH
Q 015344 98 ITESRNGNAHYAAFHNLNAGVGFQA-LLLPVAFAFLGWSWGILSLTIAYCWQLY-TLWILV-QLHEA-VPGKRYNRYVEL 173 (408)
Q Consensus 98 ~~~~r~~s~~~a~f~l~~~~iG~Gi-LsLP~Afa~~G~v~Giillil~~~l~~y-t~~lLv-~~~~~-~~g~r~~sY~el 173 (408)
....|+.+++-..+.+..+.+++.. ++.|-...+.|+..-.. .+...+..+ ...++. +.... ....+..|..|.
T Consensus 36 ~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~--~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~ 113 (502)
T PRK15419 36 ILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWI--AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDY 113 (502)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHH
Confidence 3445778888888888777776654 56887777788753111 111111111 111211 11110 001224588888
Q ss_pred HHHHhCcc
Q 015344 174 AQAAFGER 181 (408)
Q Consensus 174 ~~~~~G~~ 181 (408)
-++=||++
T Consensus 114 l~~Ry~~~ 121 (502)
T PRK15419 114 FTGRFEDK 121 (502)
T ss_pred HHHHhCCC
Confidence 88889874
No 92
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=43.50 E-value=43 Score=30.24 Aligned_cols=68 Identities=24% Similarity=0.344 Sum_probs=45.5
Q ss_pred chhHHhhhccccccccccccCC-CCCCCcccccccCCCcHHHHHHHHHhhhhhhhhchhHHH--HHhhChh
Q 015344 68 PMKRVLVNMKGYLEEVGHLTKL-NPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPVA--FAFLGWS 135 (408)
Q Consensus 68 p~~~~~~~~~~~~~~~g~~~~~-~~~d~~~~~~~~r~~s~~~a~f~l~~~~iG~GiLsLP~A--fa~~G~v 135 (408)
|........++|++.-+.--.+ |++.+-...+-.=..|++.|+|..+.+.+|.+-|+|=.. +...||.
T Consensus 41 p~~~~~~~l~~yf~~r~y~v~~~d~~~~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~ 111 (173)
T PF12046_consen 41 PPDEVLEQLKAYFEQRNYRVAEGDAEGEVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWW 111 (173)
T ss_pred CHHHHHHHHHHHHHhcCceecccCccccEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccH
Confidence 4556667788888888753222 444433333222357899999999999999999997755 4555555
No 93
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=41.63 E-value=2e+02 Score=30.12 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=28.3
Q ss_pred ccCCHHHHHHHHhCcc----chhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHH
Q 015344 166 RYNRYVELAQAAFGER----LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQ 215 (408)
Q Consensus 166 r~~sY~el~~~~~G~~----~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~ 215 (408)
+..+.++..+-.+|++ .|++++.+.++.+.+|.+.+.-. +..++..-++
T Consensus 118 ~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGl-g~~qi~~gl~ 170 (453)
T TIGR00842 118 LPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGL-GAPQINAGLS 170 (453)
T ss_pred CCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHH
Confidence 4457777777777753 56777776666665555554433 3333443333
No 94
>PRK09928 choline transport protein BetT; Provisional
Probab=41.33 E-value=3.2e+02 Score=30.20 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=21.8
Q ss_pred CCHHHHHHHHhCcc----chhhHHHHHHHHHHhhhhhHhH
Q 015344 168 NRYVELAQAAFGER----LGVWLALFPTVYLSAGTATTLI 203 (408)
Q Consensus 168 ~sY~el~~~~~G~~----~g~~~~~~~~~~l~~G~~iaYi 203 (408)
.+.+...+-.+|++ .|+.++++.++.+-+|.+.+.-
T Consensus 174 l~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLG 213 (679)
T PRK09928 174 LTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLG 213 (679)
T ss_pred CchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 45666555566643 5777877766666566655543
No 95
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=39.69 E-value=4.6e+02 Score=27.34 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHHHHH-HHHHchhhcCCCc-----cCCHHHHHHH
Q 015344 104 GNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYTLW-ILVQLHEAVPGKR-----YNRYVELAQA 176 (408)
Q Consensus 104 ~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~Giillil~~~l~~yt~~-lLv~~~~~~~g~r-----~~sY~el~~~ 176 (408)
.|-..-++..+.+.+|.| +--.||-..+.| .|.+++....++-....- +++|.. -|+| ..+|+.++.
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nG--GgAFll~yli~~l~~GiPlli~Ef~---iGr~~~~~~~~a~~~l~~- 82 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENG--GGAFLLPYLIFLLLVGIPLLLAEFA---IGRRGRKNAVGAFRKLAP- 82 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecC--cchHHHHHHHHHHHHhHHHHHHHHH---hhhhcCCChhHHHHHhcc-
Confidence 344555666677788887 456898877777 344444433333333332 333432 1322 235666554
Q ss_pred HhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHH
Q 015344 177 AFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIV 217 (408)
Q Consensus 177 ~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~ 217 (408)
+|+ .+++..+..+. .+..+.-|.+++|=.+..++...
T Consensus 83 --~~~-~~~~G~~gv~~-~~~i~sfYsvI~GWil~Y~~~s~ 119 (439)
T COG0733 83 --KKK-WEWIGWFGVLG-GFLILSFYSVIGGWILSYLVKSL 119 (439)
T ss_pred --Ccc-chhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 343 33444433222 24556667777766666655443
No 96
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=36.80 E-value=98 Score=27.91 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Q 015344 229 TVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAIT 262 (408)
Q Consensus 229 ~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~~ 262 (408)
...|.+++.++--+++.+++++++.+-.++..+|
T Consensus 106 ~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~C 139 (173)
T PF11085_consen 106 LAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLC 139 (173)
T ss_pred HHHHHHHHHHhcccccCChhhhhCchhHHHHHHH
Confidence 3455555544333455567777777766666554
No 97
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=36.59 E-value=90 Score=34.74 Aligned_cols=160 Identities=20% Similarity=0.204 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHhhhhhhhhc-hhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhh--cCCCccCCHHHHHHHHh
Q 015344 102 RNGNAHYAAFHNLNAGVGFQAL-LLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEA--VPGKRYNRYVELAQAAF 178 (408)
Q Consensus 102 r~~s~~~a~f~l~~~~iG~GiL-sLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~--~~g~r~~sY~el~~~~~ 178 (408)
|-|+..+.+.-.+-.+.|.=.. =|-|..-.+|...|.+++.+++..++.|..-|.....+ +++- -+|--|.| .+
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaG--GsYfmISR-sL 189 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAG--GSYFMISR-SL 189 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC--CeeEEEec-cc
Confidence 3455555555666666665432 36788888888888888888887777776666554432 1111 25655543 45
Q ss_pred CccchhhHHHHHHHHHHhhhhhHhHHhhhhhH-HHHHHHH--hC-CC--CCCCC-C-cchHHHHHHHHHH--HHhccCCC
Q 015344 179 GERLGVWLALFPTVYLSAGTATTLILLGGETM-KMFFQIV--CG-PL--CSSNP-L-TTVEWYLVFTSLC--IVLSQLPN 248 (408)
Q Consensus 179 G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L-~~l~~~~--~~-~~--~~~~~-l-~~~~~~ii~~~v~--i~L~~l~~ 248 (408)
|+-.|-.+.++.++...+ +...|++-.-+.+ ..++... .. +. .+... + +.+.|-.++.+++ +++.=.|-
T Consensus 190 GPEFGgAVGlcFYLgtT~-AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~ 268 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTV-AAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKF 268 (1075)
T ss_pred CccccceeeehhhhhhHH-HHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHH
Confidence 555555454443332211 1122444332221 1222211 11 00 00111 1 2233433322222 22223677
Q ss_pred chhhHHHHHHHHHHHHH
Q 015344 249 LNSIAGLSLIGAITAVT 265 (408)
Q Consensus 249 l~~L~~vS~i~~~~~l~ 265 (408)
.++++.+++.+++.+++
T Consensus 269 Vnk~A~vfL~CVILSIl 285 (1075)
T KOG2082|consen 269 VNKFAPVFLACVILSIL 285 (1075)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 88899998888776654
No 98
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=35.16 E-value=4.2e+02 Score=28.21 Aligned_cols=48 Identities=23% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCHHHHHHHHhCcc-----chhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHH
Q 015344 168 NRYVELAQAAFGER-----LGVWLALFPTVYLSAGTATTLILLGGETMKMFFQI 216 (408)
Q Consensus 168 ~sY~el~~~~~G~~-----~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~ 216 (408)
.+.++..+-.+|++ .|++++++.++.+.+|.+.+.- ++..++..-++.
T Consensus 169 l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLG-lg~~qi~~gl~~ 221 (504)
T PRK03356 169 IRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLG-LATPLVTECMQW 221 (504)
T ss_pred ccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Confidence 36788888888842 4677777666666455554433 233344444333
No 99
>PHA02764 hypothetical protein; Provisional
Probab=35.11 E-value=1.3e+02 Score=30.23 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=16.1
Q ss_pred CCCcHHHHHH-HHHhhhhhhhhchhHH
Q 015344 102 RNGNAHYAAF-HNLNAGVGFQALLLPV 127 (408)
Q Consensus 102 r~~s~~~a~f-~l~~~~iG~GiLsLP~ 127 (408)
|..+.+++.+ |+.+...|.++ +.|+
T Consensus 12 REvs~lDAF~~Nl~~m~~Gi~I-s~~~ 37 (399)
T PHA02764 12 KSFNILDIFSINLLYMGILSGI-SYPL 37 (399)
T ss_pred eeccHHHHHHHHHHhhccchhH-HHHH
Confidence 3466777777 77776677655 4454
No 100
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=34.62 E-value=5.4e+02 Score=26.63 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=28.5
Q ss_pred CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHH
Q 015344 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMF 213 (408)
Q Consensus 169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l 213 (408)
+..|..++-|+|+++....+...+ ....++++-.+-.+-.++.+
T Consensus 78 ~laq~ir~~y~~~~~~~~~~~~~i-~~~at~iae~~G~aial~ll 121 (416)
T COG1914 78 GLAEAIRERYLPGLGILLWILAEI-AGIATDIAEVAGIAIALNLL 121 (416)
T ss_pred cHHHHHHHHccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 688888888999877665543332 23666777666666555544
No 101
>TIGR00909 2A0306 amino acid transporter.
Probab=33.85 E-value=4.6e+02 Score=26.48 Aligned_cols=44 Identities=9% Similarity=-0.158 Sum_probs=28.7
Q ss_pred CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHH
Q 015344 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMF 213 (408)
Q Consensus 169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l 213 (408)
...++.++..|++++.++.+...+. +++.+.+.+...+..+..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFS-IASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4567777777776665655544443 4778878777777666554
No 102
>PRK10484 putative transporter; Provisional
Probab=33.37 E-value=6e+02 Score=26.80 Aligned_cols=85 Identities=9% Similarity=-0.051 Sum_probs=47.4
Q ss_pred cccCCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHchhhcCCCccCCHHHHHHH
Q 015344 99 TESRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILVQLHEAVPGKRYNRYVELAQA 176 (408)
Q Consensus 99 ~~~r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~Giillil~~~l~~-yt~~lLv~~~~~~~g~r~~sY~el~~~ 176 (408)
...|+.+++-..+.+..+.++++ .++.|-...+.|+...... . .+.+.. ...+++.+-.. ..+..|..|.-++
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~-~-~~~~~~~~~~~~~~p~~~---r~~~~T~~e~l~~ 109 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWE-V-TAAIALIILALIFLPRYL---KSGITTIPDFLEE 109 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHH-H-HHHHHHHHHHHHHHHHHH---hcCCccHHHHHHH
Confidence 34577888888887777766554 5668866666775431111 1 111111 12222332211 1234588999999
Q ss_pred HhCccchhhHHH
Q 015344 177 AFGERLGVWLAL 188 (408)
Q Consensus 177 ~~G~~~g~~~~~ 188 (408)
-||++..++...
T Consensus 110 Ryg~~~~~~~~~ 121 (523)
T PRK10484 110 RYDKTTRRIVSI 121 (523)
T ss_pred hcCchhHHHHHH
Confidence 999876665544
No 103
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=32.27 E-value=5.1e+02 Score=25.69 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=37.4
Q ss_pred CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhcc--C
Q 015344 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQ--L 246 (408)
Q Consensus 169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~--l 246 (408)
+-.|..++-+||++.++......+. +..+.++-++-.+..++.++ .++...|.++..+..+.+.. .
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~-~~~~~~~~~~g~a~al~ll~-----------g~~~~~~~~~~~~~~~~ll~~~~ 110 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLA-NIATQAAEIIGIAIALNLLF-----------GIPLWIWVLLVAVIAILLLWLSS 110 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc-----------CCCcHHHHHHHHHHHHHHHHHHh
Confidence 6788888888987766554432221 23334443333333333221 11234455444443333333 5
Q ss_pred CCchhhHHHH
Q 015344 247 PNLNSIAGLS 256 (408)
Q Consensus 247 ~~l~~L~~vS 256 (408)
.+++.+-.+.
T Consensus 111 ~~y~~~E~~~ 120 (358)
T PF01566_consen 111 GGYRRLERIL 120 (358)
T ss_pred ccchHHHHHH
Confidence 5666666554
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=31.13 E-value=2.5e+02 Score=32.73 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=22.6
Q ss_pred ccccccccccccCCCCCCCCCCCccCCCCCC
Q 015344 6 TMEERPETELISIPATPRASTPEVLTPSGQR 36 (408)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (408)
+-|++|..|..-+|+++| +++++.++.|.
T Consensus 40 ~~~~~~~~~~~~ap~~~~--~~qi~~~~~~~ 68 (1227)
T COG5038 40 EQEMQPEDEKLFAPIAQR--TVQIADVNFQG 68 (1227)
T ss_pred hhhcCCCCccccCccccc--cccccCCCccc
Confidence 457788888888999999 77777777663
No 105
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.75 E-value=1.4e+02 Score=23.82 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 015344 303 ALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST 368 (408)
Q Consensus 303 algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~ 368 (408)
..|++..+-.|...+.+..++= .+|.+.. ||++.+-. ++.-+-+.+|++.|..|| ...+
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~----s~~~~~~-wRalSii~-FIlG~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNT----SNVTDYV-WRALSVTC-FIVGAVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccC----CCCcchh-HHHHHHHH-HHHHHHHHHHHHHHHHhc-ccCC
Confidence 3455555555555556666542 2466654 66666432 233344667899999998 4443
No 106
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=30.58 E-value=1.3e+02 Score=25.33 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=13.8
Q ss_pred cHHHHHHHHHhhhhhhhhchhHHH
Q 015344 105 NAHYAAFHNLNAGVGFQALLLPVA 128 (408)
Q Consensus 105 s~~~a~f~l~~~~iG~GiLsLP~A 128 (408)
.|..-++.+.=.++|+..+.+...
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l 63 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLL 63 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555667766666644
No 107
>PRK09928 choline transport protein BetT; Provisional
Probab=27.55 E-value=5.1e+02 Score=28.64 Aligned_cols=64 Identities=9% Similarity=0.167 Sum_probs=41.3
Q ss_pred hhhHhHHhhhhhHHHHHHHHhCCC----CCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Q 015344 198 TATTLILLGGETMKMFFQIVCGPL----CSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAI 261 (408)
Q Consensus 198 ~~iaYiIi~~~~L~~l~~~~~~~~----~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~ 261 (408)
.++.|++...|+-..++...+... .++....+..|.++.+++.+.|...-.++.|...++++.+
T Consensus 418 l~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~al 485 (679)
T PRK09928 418 TGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGL 485 (679)
T ss_pred HHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 356678888888777777665421 1223345778888777766665555667777777766643
No 108
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=24.55 E-value=1.7e+02 Score=25.81 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=23.3
Q ss_pred CCCCCcccccccCCCcHHHHHHHHHhhhhhhhhchhHH
Q 015344 90 NPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALLLPV 127 (408)
Q Consensus 90 ~~~d~~~~~~~~r~~s~~~a~f~l~~~~iG~GiLsLP~ 127 (408)
+|.|+|..++++++.......++++-..++..+.....
T Consensus 4 ~P~~~w~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 41 (170)
T PF06930_consen 4 SPSDEWERIKREHESSWALYLVHVLLLALIPVVCFFIG 41 (170)
T ss_pred ChHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888887777666555666665555444444443
No 109
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=23.92 E-value=1.7e+02 Score=23.50 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccccchHHHHhhCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 015344 302 NALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVS 367 (408)
Q Consensus 302 ~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~ 367 (408)
...|++..+..|...+.+..++= +|.... ||++.+. .++.-+-+.+|++-|..||....
T Consensus 15 li~GiiLL~~aCIfAfidfsK~~-----~~~~~~-wRalSii-~FI~giil~lG~~i~s~ygr~C~ 73 (92)
T PF05767_consen 15 LIGGIILLIAACIFAFIDFSKNT-----KPTDYT-WRALSII-CFILGIILTLGIVIFSMYGRYCR 73 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhccCC-----CCchhH-HHHHHHH-HHHHHHHHHHHHHHHHHHhhhcC
Confidence 44577777777777777777553 465543 5666542 23333446778888999987763
No 110
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.90 E-value=1.8e+02 Score=32.13 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=21.4
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHH
Q 015344 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAI 356 (408)
Q Consensus 329 ~~P~~~~m~k~v~~s~~i~~~~Y~~vgi 356 (408)
|+|++- ..|....+....+++|+++.+
T Consensus 321 k~PSkS-IP~GTl~ava~Tf~~Yvl~~f 347 (945)
T KOG1288|consen 321 KAPSKS-IPKGTLSAVAFTFFVYVLVIF 347 (945)
T ss_pred cCcccc-CCccchHHHHHHHHHHHHHHH
Confidence 678864 558888888889999988754
No 111
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.58 E-value=1.9e+02 Score=25.28 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=34.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhcCCCCchhHHHHHHHHHHHHH
Q 015344 336 MWRGAKVAYLFIAMCLFPVAIGGFWAYGNLVST-LNAKAHNKFTIGKKKELLDVLAY 391 (408)
Q Consensus 336 m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~~v~~-il~n~~~~~~~~~~~~ll~~~~~ 391 (408)
.+|.+...+-..+++..++|+.. .|.+.-.. +-+..+-..|+|...-++..++.
T Consensus 39 ~~k~iH~~l~~la~~~~vvGl~a--vf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~ 93 (144)
T cd08766 39 VQKAVHLTLHLVALVLGIVGIYA--AFKFHNEVGIPNLYSLHSWLGIGTISLFGLQW 93 (144)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HHHHhcccCccccccHHHHHHHHHHHHHHHHH
Confidence 34667777777777778888744 44333223 44444567899988776655544
No 112
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=22.81 E-value=4.3e+02 Score=27.92 Aligned_cols=135 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHH
Q 015344 134 WSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMF 213 (408)
Q Consensus 134 ~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l 213 (408)
.++.+..++-++++.-+++++-..-............++.....+..--..-+.....+.+ ++.+++...|+....
T Consensus 341 ~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~~a~~~~l~~lP~~~i~~~~~lil----~~~f~vTs~DS~~~~ 416 (485)
T PF02028_consen 341 LVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPEAALFAFLEQLPLSKILSILFLIL----IFIFFVTSADSATYV 416 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HHHHHHHHHHTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHH----HHHHHHhcccHHHHH
Q ss_pred HHHHhCC-CCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHhhee
Q 015344 214 FQIVCGP-LCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAVTYSTMVWV 272 (408)
Q Consensus 214 ~~~~~~~-~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~~~~~l~y~~ii~~ 272 (408)
+...+.+ ..++....+..|.++++++.+.+...-.++.+.-++.++.+=....+++..+
T Consensus 417 la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~ 476 (485)
T PF02028_consen 417 LAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCI 476 (485)
T ss_dssp HHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Done!