Query 015344
Match_columns 408
No_of_seqs 206 out of 1139
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.2 3.4E-10 1.2E-14 114.4 18.2 246 100-364 6-252 (445)
2 3gia_A Uncharacterized protein 98.9 1.3E-08 4.6E-13 102.6 14.8 240 100-363 4-248 (444)
3 4djk_A Probable glutamate/gamm 98.4 6.6E-06 2.3E-10 84.3 15.8 244 100-364 9-262 (511)
4 2jln_A MHP1; hydantoin, transp 97.7 0.0033 1.1E-07 64.7 20.6 148 101-260 24-172 (501)
5 3dh4_A Sodium/glucose cotransp 85.0 33 0.0011 34.8 17.3 84 101-188 19-103 (530)
6 2xq2_A Sodium/glucose cotransp 62.8 1.4E+02 0.0048 30.6 15.7 83 101-187 48-131 (593)
7 2a65_A Leutaa, Na(+):neurotran 61.7 1.4E+02 0.0049 30.3 20.2 30 104-133 9-39 (519)
8 2wsw_A BCCT family betaine/car 18.5 7.3E+02 0.025 25.0 12.5 35 168-203 179-214 (509)
9 3gia_A Uncharacterized protein 16.4 6.5E+02 0.022 23.7 9.9 46 169-215 259-304 (444)
10 3mp7_B Preprotein translocase 15.6 1.3E+02 0.0043 21.3 3.1 29 329-361 23-51 (61)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.21 E-value=3.4e-10 Score=114.36 Aligned_cols=246 Identities=16% Similarity=0.112 Sum_probs=143.4
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
++|+-+.++.++..+.+++|+|++.+|...++.|.. +++..++.+++.........|.....+. ...+.+.+++.+|
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFG 82 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSC
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcC
Confidence 357889999999999999999999999988888864 7777788888888887777777654433 2367788899999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHH-HHhccCCCchhhHHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLC-IVLSQLPNLNSIAGLSLI 258 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~-i~L~~l~~l~~L~~vS~i 258 (408)
|+++....+...+.. .....++....++.+..++.. +. . ....+.+.+.++. +.+.-+...+..+++..+
T Consensus 83 ~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~-~--~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~ 153 (445)
T 3l1l_A 83 PFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSYFFPI-----LK-D--PWVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCGG-----GG-S--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCcc-----cc-c--cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 988877766443332 222333433333333222110 00 0 0111211111111 111123345555555443
Q ss_pred HHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCccccch
Q 015344 259 GAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHVPMWR 338 (408)
Q Consensus 259 ~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~~m~k 338 (408)
.....+...++..+..+......+. ..+.. .....++.++..++....|+|.|...+....+|+ |||++ ...|
T Consensus 154 ~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~ 226 (445)
T 3l1l_A 154 ATVLALIPIVGIAVFGWFWFRGETY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPI 226 (445)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCCC-CCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccH
Confidence 3322221111111111111111111 00011 1111235578899999999999999999999999 57754 3568
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 015344 339 GAKVAYLFIAMCLFPVAIGGFWAYGN 364 (408)
Q Consensus 339 ~v~~s~~i~~~~Y~~vgi~GYlaFG~ 364 (408)
++..+..+++++|+...+..+...+.
T Consensus 227 a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 227 ATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999988776666653
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.91 E-value=1.3e-08 Score=102.63 Aligned_cols=240 Identities=9% Similarity=0.049 Sum_probs=139.6
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHh
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLP-VAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAF 178 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP-~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~ 178 (408)
++|+-+.++..+..+..++|+|++.+| .+.+.+|- ..++..++.+++.+.+...+.|.....+. .....+.+++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~--~Gg~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS--NAGPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC--TTTHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHhHHHHh
Confidence 467889999999999999999999987 45566675 57777888888888888888887654433 236778889999
Q ss_pred Cccc-hhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHH-HHH--hccCCCchhhHH
Q 015344 179 GERL-GVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSL-CIV--LSQLPNLNSIAG 254 (408)
Q Consensus 179 G~~~-g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v-~i~--L~~l~~l~~L~~ 254 (408)
|+++ +.++.+...+.. ...+..+....++.+..++ +. . ....|..++..+ .++ +.-+...+..++
T Consensus 81 G~~~~~g~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~----~~-~-----~~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 81 GDNIITGALSILLWMSY-VISIALFAKGFAGYFLPLI----NA-P-----INTFNIAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp CSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT----TC-C-----CCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh----CC-C-----CchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9963 222222211111 2223334444444444332 11 0 111221111111 111 112334455555
Q ss_pred HHHHHHHHHHHHHHhheeeeeecCCCCCCCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCCCCCcc
Q 015344 255 LSLIGAITAVTYSTMVWVLSVSQPRPPNISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFKHPAHV 334 (408)
Q Consensus 255 vS~i~~~~~l~y~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~~P~~~ 334 (408)
+..+.....+...++.++..+...... ++.| .....++.+++.++....|+|.|...+....+|+ |||++
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~--~~~~---~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r- 219 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPS--YVIP---DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK- 219 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGG--GTSC---CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChh--hcCC---CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-
Confidence 443332221211111111111111111 1221 1122345678888899999999999999999999 57864
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q 015344 335 PMWRGAKVAYLFIAMCLFPVAIGGFWAYG 363 (408)
Q Consensus 335 ~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG 363 (408)
...|++..+..+++++|+...+......+
T Consensus 220 ~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 220 NVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35599999999999999988776555544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.35 E-value=6.6e-06 Score=84.30 Aligned_cols=244 Identities=9% Similarity=0.025 Sum_probs=119.0
Q ss_pred ccCCCcHHHHHHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHchh--hcCCCccCCHHHHHHH
Q 015344 100 ESRNGNAHYAAFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQL-YTLWILVQLHE--AVPGKRYNRYVELAQA 176 (408)
Q Consensus 100 ~~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~~-yt~~lLv~~~~--~~~g~r~~sY~el~~~ 176 (408)
.+|+-+.++.++..+..++| +.++|. .+..|.. .++..++.+++.. .+...+.|... ..+ . ......+++
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~--GG~y~~~~~ 81 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-E--GGVFAWVSN 81 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-C--CChhhhHHh
Confidence 35788999999999999986 567775 5677754 3333333333322 24555556554 443 2 367778889
Q ss_pred HhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHH
Q 015344 177 AFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLS 256 (408)
Q Consensus 177 ~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS 256 (408)
.+|++++....+...+.. .....++....++.+..++ ..+......+....+.+++..++..+. +...+...++.
T Consensus 82 ~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~in-~~g~~~~~~~~ 156 (511)
T 4djk_A 82 TLGPRWGFAAISFGYLQI-AIGFIPMLYFVLGALSYIL---KWPALNEDPITKTIAALIILWALALTQ-FGGTKYTARIA 156 (511)
T ss_dssp HHCHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTTT---TCGGGTSCSSHHHHHHHHHHHHHHHHH-HTCSSSHHHHT
T ss_pred hcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh---cCcccccCcHHHHHHHHHHHHHHHHHH-HhChHHHHHHH
Confidence 999988766554332222 2222333333333332211 011010011111111111111111111 23334434433
Q ss_pred HHHHHH----HHHHHHhheee-eeecCCCCC--CCCCCCCCCCCcCcHHHHHHHHHHHHHhhccccchHHHHhhCCCCCC
Q 015344 257 LIGAIT----AVTYSTMVWVL-SVSQPRPPN--ISYEPLSSASPAATVFSVMNALGIIAFAFRGHNLAMEIQATMPSTFK 329 (408)
Q Consensus 257 ~i~~~~----~l~y~~ii~~~-~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~algii~FAf~~h~vv~~I~~~M~~~~~ 329 (408)
.+.... .+.. ++++++ .+..+...+ .+.++..+. ....+...++...+|+|.|...+....+|+ |
T Consensus 157 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~----k 228 (511)
T 4djk_A 157 KVGFFAGILLPAFI-LIALAAIYLHSGAPVAIEMDSKTFFPD---FSKVGTLVVFVAFILSYMGVEASATHVNEM----S 228 (511)
T ss_dssp HHHHHHTTHHHHHH-HHHHHHHHTC------------CCCCC---TTSTTTTTTHHHHHHHHTTGGGGTGGGSSS----S
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcCCcccccCcccccCCC---cccchHHHHHHHHHHHHhhHHHHHHHHHhc----c
Confidence 322111 1111 111111 011221111 111111111 011123345677899999999999999999 6
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 015344 330 HPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAYGN 364 (408)
Q Consensus 330 ~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaFG~ 364 (408)
||++ ...|++..++.+++++|+...+.-....++
T Consensus 229 ~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~ 262 (511)
T 4djk_A 229 NPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPG 262 (511)
T ss_dssp CCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred Cccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence 7864 356999999999999999988776666654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.67 E-value=0.0033 Score=64.70 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=84.0
Q ss_pred cCCCcHHHHHHHHHhhhhhhhhchhHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQALLLPVAFAF-LGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~GiLsLP~Afa~-~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
+|+.+++.-...-+...++.+...+...+.. .++...++.+++..++...-+.++....... | .+|.++.|..||
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~-G---l~~~v~~R~~FG 99 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW-G---INFTVAARMPFG 99 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-C---CCHHHHTTTTSC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-C---CChhhhhHhhcc
Confidence 4556766655555555555555555544333 3445556555555554443333333332211 2 369999999999
Q ss_pred ccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 015344 180 ERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIG 259 (408)
Q Consensus 180 ~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~~~~~~~~~~l~~~~~~ii~~~v~i~L~~l~~l~~L~~vS~i~ 259 (408)
+++.++..++..+. ++|-...-...+++.+..++....+. . ....+++++.++.+++. +..++.++++..+.
T Consensus 100 ~~Gs~i~~ll~~i~-~igw~~v~~~~gg~al~~~~~~~~g~----~--~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~ 171 (501)
T 2jln_A 100 IRGSLIPITLKALL-SLFWFGFQTWLGALALDEITRLLTGF----T--NLPLWIVIFGAIQVVTT-FYGITFIRWMNVFA 171 (501)
T ss_dssp TTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCC----C--CHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCc----c--hHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHH
Confidence 99888776654443 47777777778888888776543321 0 12334555555444444 44566666665554
Q ss_pred H
Q 015344 260 A 260 (408)
Q Consensus 260 ~ 260 (408)
.
T Consensus 172 ~ 172 (501)
T 2jln_A 172 S 172 (501)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=84.98 E-value=33 Score=34.82 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=48.6
Q ss_pred cCCCcHHHHHHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGF-QALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~-GiLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
.|+.+++...+.+..+.+++ -.+++|-.....|+......... ++......+.+.....+ .+..|..|.-++-||
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~---~~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---KGIYTIPEFVEKRFN 94 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH---TTCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH---cCCccHHHHHHHHcC
Confidence 47788888888887777765 46779987777887532211110 00001111222222221 234699999999999
Q ss_pred ccchhhHHH
Q 015344 180 ERLGVWLAL 188 (408)
Q Consensus 180 ~~~g~~~~~ 188 (408)
++.+.+..+
T Consensus 95 ~~~~~~~a~ 103 (530)
T 3dh4_A 95 KKLKTILAV 103 (530)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 875554443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=62.82 E-value=1.4e+02 Score=30.57 Aligned_cols=83 Identities=10% Similarity=-0.008 Sum_probs=44.5
Q ss_pred cCCCcHHHHHHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccCCHHHHHHHHhC
Q 015344 101 SRNGNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFG 179 (408)
Q Consensus 101 ~r~~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G~v~Giillil~~~l~~yt~~lLv~~~~~~~g~r~~sY~el~~~~~G 179 (408)
.|+.+++...+.+..+.+++. .++.|-...+.|+......... ++......+.+..-..+ .+..|..|.-++=||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---KGIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH---TTCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh---CCCCCcHHHHHHHcc
Confidence 467788888888876666554 5688977777887532221110 00001111222222221 234599999999999
Q ss_pred ccchhhHH
Q 015344 180 ERLGVWLA 187 (408)
Q Consensus 180 ~~~g~~~~ 187 (408)
++.+.+..
T Consensus 124 ~~~~~~~a 131 (593)
T 2xq2_A 124 KKLKTILA 131 (593)
T ss_dssp HHHHHHHH
T ss_pred CchHHHHH
Confidence 87554443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=61.74 E-value=1.4e+02 Score=30.26 Aligned_cols=30 Identities=23% Similarity=0.157 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHhhhhhhh-hchhHHHHHhhC
Q 015344 104 GNAHYAAFHNLNAGVGFQ-ALLLPVAFAFLG 133 (408)
Q Consensus 104 ~s~~~a~f~l~~~~iG~G-iLsLP~Afa~~G 133 (408)
+|-.+-.+..+.+.+|.| +.=.||-..+-|
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nG 39 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENG 39 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 344667778888999999 777998876666
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=18.51 E-value=7.3e+02 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=24.6
Q ss_pred CCHHHHH-HHHhCccchhhHHHHHHHHHHhhhhhHhH
Q 015344 168 NRYVELA-QAAFGERLGVWLALFPTVYLSAGTATTLI 203 (408)
Q Consensus 168 ~sY~el~-~~~~G~~~g~~~~~~~~~~l~~G~~iaYi 203 (408)
.=|.-++ ++..|+ .|++++++.++.+.+|.+.+.=
T Consensus 179 ~l~PllG~~r~~G~-~G~~IDilav~at~~G~atsLG 214 (509)
T 2wsw_A 179 TLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTSLG 214 (509)
T ss_dssp GCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHHHH
Confidence 3577788 788776 5888888777776667665543
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=16.40 E-value=6.5e+02 Score=23.69 Aligned_cols=46 Identities=9% Similarity=0.001 Sum_probs=28.0
Q ss_pred CHHHHHHHHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHH
Q 015344 169 RYVELAQAAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQ 215 (408)
Q Consensus 169 sY~el~~~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~ 215 (408)
...++++..+|++...++.....+. .+++..+.+...+..+..+.+
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~-~~~~~~~~~~~~sR~l~a~a~ 304 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFS-ISSAMNATIYGGANVAYSLAK 304 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTTHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888875444444433333 367777777766666665543
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=15.62 E-value=1.3e+02 Score=21.32 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=16.9
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 015344 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWA 361 (408)
Q Consensus 329 ~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYla 361 (408)
++|+++-+.+.... +.+-++++|++||..
T Consensus 23 ~KPd~~Ef~~iak~----~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 23 KKPNWATYKRAAKI----TGLGIILIGLIGMLI 51 (61)
T ss_dssp CCCCTTHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 56887765554443 333445667777754
Done!