Query 015344
Match_columns 408
No_of_seqs 206 out of 1139
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 10:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015344.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015344hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 19.7 3E+02 0.022 24.8 19.9 107 104-217 5-119 (509)
2 d1rh5b_ f.23.28.1 (B:) Preprot 14.0 48 0.0035 21.5 2.2 30 329-362 16-45 (56)
3 d1mv8a2 c.2.1.6 (A:1-202) GDP- 5.6 79 0.0058 25.1 0.7 13 116-128 4-16 (202)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.3 3.1E+02 0.023 22.6 4.6 36 110-148 7-42 (248)
5 d1q90g_ f.23.26.1 (G:) PetG su 4.7 2.6E+02 0.019 15.1 2.3 15 132-146 7-21 (30)
6 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 4.5 1.6E+02 0.012 22.5 1.9 23 168-190 67-92 (146)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 3.7 3.6E+02 0.026 14.3 3.1 17 250-266 2-18 (30)
8 d1pq1a_ f.1.4.1 (A:) Apoptosis 3.4 4.1E+02 0.03 21.0 3.7 22 168-189 121-144 (196)
9 d1dlja2 c.2.1.6 (A:1-196) UDP- 3.2 1.3E+02 0.0095 23.3 0.2 13 116-128 4-16 (196)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 3.0 3.8E+02 0.027 15.2 2.1 15 132-146 15-29 (37)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=19.70 E-value=3e+02 Score=24.81 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=58.8
Q ss_pred CcHHHHHHHHHhhhhhhhhch-hHHHH-HhhChhHHHHHHHHHHHHHHHHH------HHHHHchhhcCCCccCCHHHHHH
Q 015344 104 GNAHYAAFHNLNAGVGFQALL-LPVAF-AFLGWSWGILSLTIAYCWQLYTL------WILVQLHEAVPGKRYNRYVELAQ 175 (408)
Q Consensus 104 ~s~~~a~f~l~~~~iG~GiLs-LP~Af-a~~G~v~Giillil~~~l~~yt~------~lLv~~~~~~~g~r~~sY~el~~ 175 (408)
++..+-.+..+...+|.|=+= .||-. ++.|.. +++...-.+...+. ..+.|.... | ....+..++.
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGga---FlipY~~~l~l~gvPll~lE~~lGq~~~~--g-~i~~~~~i~~ 78 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGA---FMIPYIIAFLLVGIPLMWIEWAMGRYGGA--Q-GHGTTPAIFY 78 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHT--T-TCCSHHHHHH
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHcCCCCC--C-cccHHHHHHH
Confidence 445677888888999987544 99775 555533 22222222222221 123333221 2 1347888777
Q ss_pred HHhCccchhhHHHHHHHHHHhhhhhHhHHhhhhhHHHHHHHH
Q 015344 176 AAFGERLGVWLALFPTVYLSAGTATTLILLGGETMKMFFQIV 217 (408)
Q Consensus 176 ~~~G~~~g~~~~~~~~~~l~~G~~iaYiIi~~~~L~~l~~~~ 217 (408)
...+.+..+.+.....+. ++..++.|.++.+-.+..++..+
T Consensus 79 ~~~~~~~~~giG~~~~~~-~~~i~~yy~vi~~w~l~Y~~~s~ 119 (509)
T d2a65a1 79 LLWRNRFAKILGVFGLWI-PLVVAIYYVYIESWTLGFAIKFL 119 (509)
T ss_dssp HHSCSHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcchhHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 766554444554433332 35667778888777776666544
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.98 E-value=48 Score=21.50 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=17.4
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 015344 329 KHPAHVPMWRGAKVAYLFIAMCLFPVAIGGFWAY 362 (408)
Q Consensus 329 ~~P~~~~m~k~v~~s~~i~~~~Y~~vgi~GYlaF 362 (408)
++|+++-+.+...+ +++-.+++|+.||..+
T Consensus 16 ~KP~~~Ef~~ia~v----~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKV----TALGISLLGIIGYIIH 45 (56)
T ss_dssp ECCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 46777654444333 3344467777787655
No 3
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.55 E-value=79 Score=25.14 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=10.1
Q ss_pred hhhhhhhchhHHH
Q 015344 116 AGVGFQALLLPVA 128 (408)
Q Consensus 116 ~~iG~GiLsLP~A 128 (408)
+++|.|-+++|.|
T Consensus 4 ~ViGlG~vGl~~a 16 (202)
T d1mv8a2 4 SIFGLGYVGAVCA 16 (202)
T ss_dssp EEECCSTTHHHHH
T ss_pred EEECCCHhHHHHH
Confidence 4678888888866
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.29 E-value=3.1e+02 Score=22.59 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=24.9
Q ss_pred HHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH
Q 015344 110 AFHNLNAGVGFQALLLPVAFAFLGWSWGILSLTIAYCWQ 148 (408)
Q Consensus 110 ~f~l~~~~iG~GiLsLP~Afa~~G~v~Giillil~~~l~ 148 (408)
.+-+++++ ++.+.+.++++.-|.++++++++..++.
T Consensus 7 ll~l~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 42 (248)
T d2r6gf1 7 VLGLLGLL---VGYLVVLMYAQGEYLFAITTLILSSAGL 42 (248)
T ss_dssp HHHHHHHH---HHHTHHHHHGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHcchHHHHHHHHHHHHheE
Confidence 33444444 4557788999999998888777666554
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.71 E-value=2.6e+02 Score=15.13 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=10.0
Q ss_pred hChhHHHHHHHHHHH
Q 015344 132 LGWSWGILSLTIAYC 146 (408)
Q Consensus 132 ~G~v~Giillil~~~ 146 (408)
+|+++|++-..+.++
T Consensus 7 ~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHH
Confidence 577777776666554
No 6
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=4.51 E-value=1.6e+02 Score=22.46 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=17.6
Q ss_pred CCHHHHHHHHh--Cc-cchhhHHHHH
Q 015344 168 NRYVELAQAAF--GE-RLGVWLALFP 190 (408)
Q Consensus 168 ~sY~el~~~~~--G~-~~g~~~~~~~ 190 (408)
.+|.+++...| |. .|||++.++.
T Consensus 67 ~~f~~V~~elF~DG~~NWGRIVaLfa 92 (146)
T d1k3ka_ 67 DQLGLSMLQVSGDGNMNWGRALAILT 92 (146)
T ss_dssp HHHHTHHHHHCSSCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 46889999999 65 5899887643
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.70 E-value=3.6e+02 Score=14.29 Aligned_cols=17 Identities=18% Similarity=0.340 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 015344 250 NSIAGLSLIGAITAVTY 266 (408)
Q Consensus 250 ~~L~~vS~i~~~~~l~y 266 (408)
.++.++-+++.+..+++
T Consensus 2 e~i~yv~ifac~i~lff 18 (30)
T d2axtt1 2 ETITYVFIFACIIALFF 18 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHH
Confidence 34555555554444433
No 8
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.41 E-value=4.1e+02 Score=20.96 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=16.9
Q ss_pred CCHHHHHHHHh--CccchhhHHHH
Q 015344 168 NRYVELAQAAF--GERLGVWLALF 189 (408)
Q Consensus 168 ~sY~el~~~~~--G~~~g~~~~~~ 189 (408)
..|.++++.+| |-.|||++.++
T Consensus 121 ~~F~~V~~elF~dginWGRIVal~ 144 (196)
T d1pq1a_ 121 QSFEQVVNELFRDGVNWGRIVAFF 144 (196)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 46889999999 55688887654
No 9
>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}
Probab=3.18 E-value=1.3e+02 Score=23.35 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=8.2
Q ss_pred hhhhhhhchhHHH
Q 015344 116 AGVGFQALLLPVA 128 (408)
Q Consensus 116 ~~iG~GiLsLP~A 128 (408)
++||.|-++||.|
T Consensus 4 ~ViGlG~vGl~~a 16 (196)
T d1dlja2 4 AVAGSGYVGLSLG 16 (196)
T ss_dssp EEECCSHHHHHHH
T ss_pred EEECCChhHHHHH
Confidence 3567777776654
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.98 E-value=3.8e+02 Score=15.15 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=8.1
Q ss_pred hChhHHHHHHHHHHH
Q 015344 132 LGWSWGILSLTIAYC 146 (408)
Q Consensus 132 ~G~v~Giillil~~~ 146 (408)
..+.||++++.+.++
T Consensus 15 tsLy~GlLlifvl~v 29 (37)
T d2axtl1 15 TSLYLGLLLILVLAL 29 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 445667665554443
Done!