Your job contains 1 sequence.
>015345
MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK
NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL
SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY
ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADSSQFPSNW
IFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLNGVQAAKAVGKPRKQAPKGEDS
KDDDKYNSGDESESDGEEIAENVKSKKRQKLGGQVKQPSPRKRKSKESDTEDDDGGNDDD
GGGSDDNAEEAPKTKSGKVTKNKQAKAVTTSKEKVISQKGKPSKKKAK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015345
(408 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2035195 - symbol:MMH-1 "MUTM homolog-1" specie... 1281 1.3e-130 1
ASPGD|ASPL0000009569 - symbol:AN3629 species:162425 "Emer... 518 9.5e-50 1
TIGR_CMR|DET_1389 - symbol:DET_1389 "formamidopyrimidine-... 283 7.6e-25 1
TIGR_CMR|GSU_0997 - symbol:GSU_0997 "formamidopyrimidine-... 275 5.3e-24 1
TIGR_CMR|CHY_1649 - symbol:CHY_1649 "formamidopyrimidine-... 256 5.5e-22 1
TIGR_CMR|APH_0411 - symbol:APH_0411 "formamidopyrimidine-... 233 2.0e-19 1
UNIPROTKB|P64150 - symbol:fpg1 "Formamidopyrimidine-DNA g... 228 7.8e-19 1
UNIPROTKB|P05523 - symbol:mutM species:83333 "Escherichia... 172 1.1e-18 2
TIGR_CMR|BA_4830 - symbol:BA_4830 "formamidopyrimidine-DN... 221 5.1e-18 1
TIGR_CMR|SPO_0146 - symbol:SPO_0146 "formamidopyrimidine-... 218 1.1e-17 1
TIGR_CMR|SO_4726 - symbol:SO_4726 "formamidopyrimidine-DN... 216 1.9e-17 1
TIGR_CMR|ECH_0602 - symbol:ECH_0602 "formamidopyrimidine-... 199 1.6e-15 1
UNIPROTKB|Q9KVC5 - symbol:mutM "Formamidopyrimidine-DNA g... 190 1.8e-13 1
TIGR_CMR|VC_0221 - symbol:VC_0221 "formamidopyrimidine-DN... 190 1.8e-13 1
UNIPROTKB|P71565 - symbol:Rv0944 "Formamidopyrimidine-DNA... 128 1.1e-07 1
UNIPROTKB|F1NLM0 - symbol:F1NLM0 "Uncharacterized protein... 124 3.5e-05 1
UNIPROTKB|E1BYL0 - symbol:NEIL2 "Uncharacterized protein"... 123 6.3e-05 1
RGD|1312033 - symbol:Neil2 "nei endonuclease VIII-like 2 ... 123 6.5e-05 1
UNIPROTKB|E2RAM2 - symbol:NEIL1 "Uncharacterized protein"... 123 8.8e-05 1
UNIPROTKB|F1MGF3 - symbol:NEIL1 "Uncharacterized protein"... 113 0.00033 1
UNIPROTKB|P64158 - symbol:nei1 "Endonuclease 8 1" species... 114 0.00043 1
UNIPROTKB|F1SJ67 - symbol:NEIL1 "Uncharacterized protein"... 115 0.00069 1
MGI|MGI:2686058 - symbol:Neil2 "nei like 2 (E. coli)" spe... 113 0.00085 1
UNIPROTKB|F1MC42 - symbol:NEIL1 "Uncharacterized protein"... 113 0.00086 1
UNIPROTKB|E2R6L5 - symbol:NEIL2 "Uncharacterized protein"... 113 0.00088 1
>TAIR|locus:2035195 [details] [associations]
symbol:MMH-1 "MUTM homolog-1" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA;IDA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008534 "oxidized purine
nucleobase lesion DNA N-glycosylase activity" evidence=IEA]
[GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds"
evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS;IDA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0009560 "embryo sac egg
cell differentiation" evidence=RCA] [GO:0006979 "response to
oxidative stress" evidence=TAS] InterPro:IPR000191
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
Pfam:PF01149 Pfam:PF06831 PROSITE:PS51068 SMART:SM00898
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0006284
GO:GO:0003684 GO:GO:0008270 GO:GO:0006281 GO:GO:0006289
EMBL:AC008016 GO:GO:0019104 eggNOG:COG0266 GO:GO:0008534
SUPFAM:SSF81624 SUPFAM:SSF46946 KO:K10563 TIGRFAMs:TIGR00577
EMBL:AB010690 EMBL:AF099970 EMBL:AF099971 EMBL:BT043496
IPI:IPI00532748 PIR:E96565 PIR:T51713 PIR:T51714 RefSeq:NP_564608.1
UniGene:At.11653 UniGene:At.46186 PDB:3TWK PDB:3TWL PDB:3TWM
PDBsum:3TWK PDBsum:3TWL PDBsum:3TWM ProteinModelPortal:O80358
SMR:O80358 PaxDb:O80358 PRIDE:O80358 EnsemblPlants:AT1G52500.2
GeneID:841681 KEGG:ath:AT1G52500 TAIR:At1g52500
HOGENOM:HOG000191723 InParanoid:O80358 OMA:PEQYSNT PhylomeDB:O80358
ProtClustDB:CLSN2688720 Genevestigator:O80358 Uniprot:O80358
Length = 390
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 260/344 (75%), Positives = 285/344 (82%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVEAARRAIEE+C+GKKI + IIADDNKVI G+S SDF+ S+LGK I+SA RKGK
Sbjct: 1 MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGK 60
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
NLWL LDSPPFPSFQFGM GAIYIKGVAVT+YKRSAVKD++EWPSKYSKFFVELDDGLEL
Sbjct: 61 NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL 120
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
SFTDKRRFAKVRLL +PTSV PISELGPDALLEPMTVDEF +SL+KKKITIK LLLDQ Y
Sbjct: 121 SFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEFAESLAKKKITIKPLLLDQGY 180
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADSSQFPSNW 240
ISGIGNW+ADEVLYQA+IHPLQTA SLSKE C L IKEVIEKA+EV ADSSQFPS W
Sbjct: 181 ISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKAVEVDADSSQFPSYW 240
Query: 241 IFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLNGVQAAKAVGKPRKQAPKGEDS 300
IFH+REKKPGKAFVDGKKIDFITAGGRTTAYVPELQKL G A KA K R A +G
Sbjct: 241 IFHNREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLYGKDAEKAA-KVRP-AKRGVKP 298
Query: 301 KDDDKYNXXXXXXXXXXXIAENVKSKKRQK-LGGQVKQPSPRKR 343
K+DD E+ KSKK QK GG+ K+P+ + +
Sbjct: 299 KEDDGDGEEDEQETEKED--ESAKSKKGQKPRGGRGKKPASKTK 340
>ASPGD|ASPL0000009569 [details] [associations]
symbol:AN3629 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] InterPro:IPR010979
InterPro:IPR012319 InterPro:IPR015886 Pfam:PF01149 Pfam:PF06831
PROSITE:PS51068 SMART:SM00898 GO:GO:0006284 GO:GO:0003684
GO:GO:0008270 EMBL:BN001302 EMBL:AACD01000061 GO:GO:0003906
GO:GO:0006289 eggNOG:COG0266 SUPFAM:SSF81624 SUPFAM:SSF46946
GO:GO:0016799 KO:K10563 HOGENOM:HOG000191723 OMA:PEQYSNT
RefSeq:XP_661233.1 EnsemblFungi:CADANIAT00005111 GeneID:2873052
KEGG:ani:AN3629.2 OrthoDB:EOG46X2JN Uniprot:Q5B751
Length = 363
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 126/345 (36%), Positives = 186/345 (53%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVID--GVSASDFEASVLGKAILSAHRK 58
MPEL E+ I +H +GK + K D+ V G SA++F+ ++ GK ++ ++
Sbjct: 1 MPELAEIYRIVHFIRQHLVGKTLAKVSTQHDDIVYGKVGTSAAEFQKAMEGKKVIGTGQQ 60
Query: 59 GKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG- 117
GK W+ + SPP FGM G + I+ A T Y R+ + +WP KY KF +E D
Sbjct: 61 GKYFWITMTSPPHVVMHFGMAGWLKIRD-ADTYYYRTDKPEDKQWPPKYWKFLLETDGDP 119
Query: 118 -LELSFTDKRRFAKVRLLNDPT----SVPPISELGPDALLEPMTVD-EFTDS-LSKKKIT 170
+E +F D RR A++RL++ P + P+ E GPD L++ V E+ S LS KK+
Sbjct: 120 KVEAAFVDFRRLARIRLVDCPAEEIRNYTPLKENGPDPLVDKDVVTKEWLGSKLSSKKVP 179
Query: 171 IKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVG 230
+KALLLDQ+ ISGIGNW+ DE+LY AKIHP Q + +L+ + L I V + EV
Sbjct: 180 VKALLLDQAVISGIGNWMGDEILYHAKIHPEQYSNTLTDDQVKELHSSIHYVCSTSTEVL 239
Query: 231 ADSSQFPSNWIFHSREKKPGK----AFVDGKKIDFITAGGRTTAYVPELQKLNGVQAAKA 286
ADS +FP +W+F R K K + +G+KI F+T GGRT+A VP +QK G A
Sbjct: 240 ADSDKFPEHWLFKHRWSKGKKNKQSSLPNGEKITFLTVGGRTSAVVPSVQKKTGPVA--- 296
Query: 287 VGKPRKQAPKGEDSKDDDKYNXXXXXXXXXXXIAENVKSKKRQKL 331
G +++ ++ + K I +SK+ KL
Sbjct: 297 -GDVKQEDESSDERQTKRKRTTTKKDTSKTDKIDSRKESKQSVKL 340
>TIGR_CMR|DET_1389 [details] [associations]
symbol:DET_1389 "formamidopyrimidine-DNA glycosylase"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008534 "oxidized purine nucleobase
lesion DNA N-glycosylase activity" evidence=ISS] InterPro:IPR000191
InterPro:IPR000214 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF01149 Pfam:PF06831
PROSITE:PS01242 PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006289
eggNOG:COG0266 GO:GO:0008534 SUPFAM:SSF81624 SUPFAM:SSF46946
KO:K10563 TIGRFAMs:TIGR00577 OMA:VLRYNDP HOGENOM:HOG000020881
RefSeq:YP_182098.1 ProteinModelPortal:Q3Z6Q1 STRING:Q3Z6Q1
GeneID:3229336 KEGG:det:DET1389 PATRIC:21609805
ProtClustDB:CLSK836948 BioCyc:DETH243164:GJNF-1390-MONOMER
Uniprot:Q3Z6Q1
Length = 270
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 83/239 (34%), Positives = 130/239 (54%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE + I H +GKKI + + A K + ++F V G + R+GK
Sbjct: 1 MPELPEVETVKNEIMPHLLGKKITR-MEALWAKTLCPPE-TEFNKLVSGLQVTGLSRRGK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVK-DTDEWPSKYSKFFVELDDGLE 119
+ + L F S M+G + +AVK +T+++P ++++ L++G +
Sbjct: 59 YIIISLSGGLFISVHLKMSGGL------------TAVKAETEQFP-RFTRAVFHLENGEQ 105
Query: 120 LSFTDKRRFAKVRLLNDPTSVPPISE-LGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
+ FTD R+F ++ LL TS+ I E LGP+ L T + LS +K IKA+LLDQ
Sbjct: 106 VYFTDIRKFGRINLL---TSLDTILEKLGPEPLEGDFTPEVLGKRLSGRKGPIKAVLLDQ 162
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALE-VGADSSQF 236
++G+GN ADE L++A ++PL+ A SLSK L I+ V+ KA++ GA S +
Sbjct: 163 KVLAGVGNMYADEALFKACLNPLRPADSLSKAEVTKLHSAIQSVLHKAIQNKGASVSTY 221
>TIGR_CMR|GSU_0997 [details] [associations]
symbol:GSU_0997 "formamidopyrimidine-DNA glycosylase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008534 "oxidized purine nucleobase
lesion DNA N-glycosylase activity" evidence=ISS] HAMAP:MF_00103
InterPro:IPR000191 InterPro:IPR000214 InterPro:IPR010663
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 InterPro:IPR020629 Pfam:PF01149 Pfam:PF06827
Pfam:PF06831 PROSITE:PS01242 PROSITE:PS51066 PROSITE:PS51068
SMART:SM00898 GO:GO:0046872 GO:GO:0006284 GO:GO:0003684
GO:GO:0008270 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0006289
eggNOG:COG0266 GO:GO:0008534 SUPFAM:SSF81624 SUPFAM:SSF46946
KO:K10563 TIGRFAMs:TIGR00577 OMA:VLRYNDP HOGENOM:HOG000020881
RefSeq:NP_952051.1 ProteinModelPortal:Q74EG5 GeneID:2685647
KEGG:gsu:GSU0997 PATRIC:22024764 BioCyc:GSUL243231:GH27-977-MONOMER
Uniprot:Q74EG5
Length = 271
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 91/288 (31%), Positives = 136/288 (47%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R I H G+++ ++ A K+ + + + G+ I R+ K
Sbjct: 1 MPELPEVETTLRGIAPHVTGRRVT-AVTARAAKLRLPIPP-ELGERLTGRVIERVERRAK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L LR GMTG + V P KY + LDDG L
Sbjct: 59 YLLLRCGDGT-AIIHLGMTGTL-------------RVAPAGSPPGKYDHLDLVLDDGRTL 104
Query: 121 SFTDKRRFAKVRLL-NDPTSVPPISELGPDALLEPMTVDEFTDSLSKKK-ITIKALLLDQ 178
F D R+F V +DP + P +++LGP+ P+ + S S+K+ IK LL+D
Sbjct: 105 RFRDPRKFGLVLWTGSDPLAHPLLAQLGPEPF-PPLFNGSYLFSRSRKRNAAIKLLLMDN 163
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADS----- 233
+ G+GN A+E L++A+IHP + A SLS+E CATL + +V+ A+ G +
Sbjct: 164 RIVVGVGNIYANEALFRARIHPERAAGSLSEEDCATLATAVGDVLRDAIAEGDTTLHEFI 223
Query: 234 -SQFPSNW--IFHSREKKPGK-AFVDGKKIDFITAGGRTTAYVPELQK 277
++ PS + I + + GK V G I I G R+T + P QK
Sbjct: 224 ATEVPSGYFRINPAVYGQTGKPCTVCGTPIARIRLGNRSTWFCPVCQK 271
>TIGR_CMR|CHY_1649 [details] [associations]
symbol:CHY_1649 "formamidopyrimidine-DNA glycosylase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0008534 "oxidized purine
nucleobase lesion DNA N-glycosylase activity" evidence=ISS]
HAMAP:MF_00103 InterPro:IPR000191 InterPro:IPR000214
InterPro:IPR010663 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 InterPro:IPR020629
Pfam:PF01149 Pfam:PF06827 Pfam:PF06831 PROSITE:PS01242
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898 GO:GO:0046872
GO:GO:0006284 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0008270 GO:GO:0006289 eggNOG:COG0266 GO:GO:0008534
SUPFAM:SSF81624 SUPFAM:SSF46946 KO:K10563 TIGRFAMs:TIGR00577
HOGENOM:HOG000020885 OMA:VLRYNDP RefSeq:YP_360470.1
ProteinModelPortal:Q3ABL4 STRING:Q3ABL4 GeneID:3727395
KEGG:chy:CHY_1649 PATRIC:21276419
BioCyc:CHYD246194:GJCN-1648-MONOMER Uniprot:Q3ABL4
Length = 263
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 87/287 (30%), Positives = 133/287 (46%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE +R + +GK I + + K+I VS +F V+GK I++ R+GK
Sbjct: 1 MPELPEVETIKRTLAPKILGKTIYRVEVYLP-KIIKNVSVEEFTRRVVGKEIVALKRRGK 59
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L + L + MTG + I + + KD K++ +L D LEL
Sbjct: 60 YLLIDLSGKETVTVHLRMTGKLLI-------LPKGSPKD------KHTHAIFDLGD-LEL 105
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
F D R+F +P E+GP+ L + T + L + +KA+LLDQ
Sbjct: 106 HFNDIRQFGGFSF-----EMP---EIGPEPLEDEFTPEYLKTKLKASQKNLKAVLLDQKI 157
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALE---------VGA 231
I+GIGN ADE+L++A + P + A SLS++ L K I++++ +E V A
Sbjct: 158 IAGIGNIYADEILFEAGLSPKRIAASLSEDEAEELFKAIRKILALGIEYRGTSIRDYVDA 217
Query: 232 DSSQFPSNWIFHSREKKPGKAFVDGKKIDFITA-GGRTTAYVPELQK 277
++ Q + K G V + GR+T Y P QK
Sbjct: 218 ENQQGSFQRLLKVYGKN-GSLCVRCNNVLIRERHAGRSTHYCPHCQK 263
>TIGR_CMR|APH_0411 [details] [associations]
symbol:APH_0411 "formamidopyrimidine-DNA glycosylase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008534 "oxidized purine nucleobase
lesion DNA N-glycosylase activity" evidence=ISS] InterPro:IPR000191
InterPro:IPR000214 InterPro:IPR010663 InterPro:IPR010979
InterPro:IPR012319 InterPro:IPR015886 InterPro:IPR015887
Pfam:PF01149 Pfam:PF06827 Pfam:PF06831 PROSITE:PS01242
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898 GO:GO:0046872
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0006289 eggNOG:COG0266
GO:GO:0008534 SUPFAM:SSF81624 SUPFAM:SSF46946 KO:K10563
TIGRFAMs:TIGR00577 OMA:VLRYNDP HOGENOM:HOG000020881
RefSeq:YP_505015.1 ProteinModelPortal:Q2GKT6 STRING:Q2GKT6
GeneID:3930078 KEGG:aph:APH_0411 PATRIC:20949438
ProtClustDB:CLSK747356 BioCyc:APHA212042:GHPM-438-MONOMER
Uniprot:Q2GKT6
Length = 268
Score = 233 (87.1 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 75/247 (30%), Positives = 115/247 (46%)
Query: 40 ASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKD 99
A DFE V G+ I S +R K L ++LDS F GM+G I Y + V
Sbjct: 38 ADDFEQLVTGREICSVYRVAKYLVMQLDSGAKLVFHMGMSGRIL--------YMHAPV-- 87
Query: 100 TDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDE 159
P K+ + G L F D RRF V LL+ + ++GPD E D
Sbjct: 88 ----PEKHDCVVFAMQHGYSLVFNDTRRFGLVTLLDGEGYRSLLEKMGPDPFSEAFNADC 143
Query: 160 FTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCI 219
+ K +I K++L++ + + GIGN A E+L+ A I P + +LS+E C +++
Sbjct: 144 LLNMHGKARI--KSVLMNSAVVVGIGNIYASEILFTAAILPHREVSTLSREECCRIVEST 201
Query: 220 KEVIEKALEVGADSSQ---FPS----NWIFHSRE--KKPGKAFVDGKKIDFITAGGRTTA 270
+EV++ A+ G S + P+ N+ H R +K K + G +I GGR+T
Sbjct: 202 REVLKLAIATGGSSIRDYRTPTGDVGNFSKHFRVYGRKGEKCYTCGGEIQVEKQGGRSTF 261
Query: 271 YVPELQK 277
+ QK
Sbjct: 262 FCRHCQK 268
Score = 156 (60.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 52/169 (30%), Positives = 75/169 (44%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R++ + IG++I + + + + A DFE V G+ I S +R K
Sbjct: 1 MPELPEVEVIARSLADKIIGQRI-RDVEVKRRDLRVRI-ADDFEQLVTGREICSVYRVAK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
L ++LDS F GM+G I Y + V P K+ + G L
Sbjct: 59 YLVMQLDSGAKLVFHMGMSGRIL--------YMHAPV------PEKHDCVVFAMQHGYSL 104
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKI 169
F D RRF V LL+ + ++GPD E D + K +I
Sbjct: 105 VFNDTRRFGLVTLLDGEGYRSLLEKMGPDPFSEAFNADCLLNMHGKARI 153
>UNIPROTKB|P64150 [details] [associations]
symbol:fpg1 "Formamidopyrimidine-DNA glycosylase 1"
species:1773 "Mycobacterium tuberculosis" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0008534 "oxidized
purine nucleobase lesion DNA N-glycosylase activity" evidence=IDA]
[GO:0034039 "8-oxo-7,8-dihydroguanine DNA N-glycosylase activity"
evidence=IDA] HAMAP:MF_00103 InterPro:IPR000191 InterPro:IPR000214
InterPro:IPR010663 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 InterPro:IPR020629
Pfam:PF01149 Pfam:PF06827 Pfam:PF06831 PROSITE:PS01242
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898 GO:GO:0005886
GO:GO:0006979 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006284 GO:GO:0003684
GO:GO:0008270 GO:GO:0003690 EMBL:BX842581 GO:GO:0006289
eggNOG:COG0266 SUPFAM:SSF81624 SUPFAM:SSF46946 PIR:D70748
RefSeq:NP_217440.1 RefSeq:NP_337507.1 RefSeq:YP_006516378.1
ProteinModelPortal:P64150 SMR:P64150
EnsemblBacteria:EBMYCT00000000824 EnsemblBacteria:EBMYCT00000072433
GeneID:13317718 GeneID:887438 GeneID:925264 KEGG:mtc:MT2994
KEGG:mtu:Rv2924c KEGG:mtv:RVBD_2924c PATRIC:18128350
TubercuList:Rv2924c HOGENOM:HOG000020884 KO:K10563 OMA:RREKFMN
ProtClustDB:PRK01103 GO:GO:0034039 TIGRFAMs:TIGR00577
Uniprot:P64150
Length = 289
Score = 228 (85.3 bits), Expect = 7.8e-19, P = 7.8e-19
Identities = 78/247 (31%), Positives = 111/247 (44%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVI-DGVSASDFEASVLGKAILSAHRKG 59
MPELPEVE RR ++ H G+ I + + V +D A + G I R+G
Sbjct: 1 MPELPEVEVVRRGLQAHVTGRTITEVRVHHPRAVRRHDAGPADLTARLRGARINGTDRRG 60
Query: 60 KNLWLRLDSPPF--PS-----FQFGMTGAIYIKGVAVTQYKR-SAVKDTDEWPSKYSKFF 111
K LWL L++ P+ GM+G + + V + R SA+
Sbjct: 61 KYLWLTLNTAGVHRPTDTALVVHLGMSGQMLLGAVPCAAHVRISAL-------------- 106
Query: 112 VELDDGLELSFTDKRRFAKVRLLN----DPTSVP-PISELGPDALLEPMTVDEFTDSLSK 166
LDDG LSF D+R F L + D + VP P++ L D L D L +
Sbjct: 107 --LDDGTVLSFADQRTFGGWLLADLVTVDGSVVPVPVAHLARDPLDPRFDCDAVVKVLRR 164
Query: 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKA 226
K +K LLDQ +SGIGN ADE L++AK++ A +L +L +V+ +A
Sbjct: 165 KHSELKRQLLDQRVVSGIGNIYADEALWRAKVNGAHVAATLRCRRLGAVLHAAADVMREA 224
Query: 227 LEVGADS 233
L G S
Sbjct: 225 LAKGGTS 231
>UNIPROTKB|P05523 [details] [associations]
symbol:mutM species:83333 "Escherichia coli K-12"
[GO:0019104 "DNA N-glycosylase activity" evidence=EXP;IDA]
[GO:0004519 "endonuclease activity" evidence=EXP;IDA] [GO:0008270
"zinc ion binding" evidence=IEA;IDA] [GO:0046872 "metal ion
binding" evidence=IEA;IDA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IDA] [GO:0003684
"damaged DNA binding" evidence=IEA;IDA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006285
"base-excision repair, AP site formation" evidence=IDA] [GO:0000703
"oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity"
evidence=IDA] [GO:0008534 "oxidized purine nucleobase lesion DNA
N-glycosylase activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IC] HAMAP:MF_00103 InterPro:IPR000191 InterPro:IPR000214
InterPro:IPR010663 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 InterPro:IPR020629
Pfam:PF01149 Pfam:PF06827 Pfam:PF06831 PROSITE:PS01242
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898 EchoBASE:EB0325
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0008270
EMBL:L10328 GO:GO:0004519 GO:GO:0006289 EMBL:M60670 EMBL:M86305
eggNOG:COG0266 GO:GO:0008534 GO:GO:0000703 SUPFAM:SSF81624
SUPFAM:SSF46946 KO:K10563 ProtClustDB:PRK01103 TIGRFAMs:TIGR00577
OMA:VLRYNDP EMBL:X06036 PIR:A30254 RefSeq:NP_418092.1
RefSeq:YP_491798.1 PDB:1K82 PDBsum:1K82 ProteinModelPortal:P05523
SMR:P05523 DIP:DIP-10286N IntAct:P05523 PRIDE:P05523
EnsemblBacteria:EBESCT00000003434 EnsemblBacteria:EBESCT00000003435
EnsemblBacteria:EBESCT00000003436 EnsemblBacteria:EBESCT00000003437
EnsemblBacteria:EBESCT00000015059 GeneID:12933569 GeneID:946765
KEGG:ecj:Y75_p3539 KEGG:eco:b3635 PATRIC:32122757 EcoGene:EG10329
HOGENOM:HOG000020881 BioCyc:EcoCyc:EG10329-MONOMER
BioCyc:ECOL316407:JW3610-MONOMER BioCyc:MetaCyc:EG10329-MONOMER
EvolutionaryTrace:P05523 Genevestigator:P05523 GO:GO:0006285
Uniprot:P05523
Length = 269
Score = 172 (65.6 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 41/127 (32%), Positives = 63/127 (49%)
Query: 104 PSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDS 163
P K+ + + +G L +TD RRF + ++ LGP+ L + +
Sbjct: 87 PEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLHQK 146
Query: 164 LSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVI 223
+KKK IK L+D + G+GN A E L+ A IHP + A SLS C L + IK V+
Sbjct: 147 CAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVL 206
Query: 224 EKALEVG 230
+++E G
Sbjct: 207 LRSIEQG 213
Score = 107 (42.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE +RR IE H +G I+ +++ + ++ VS + S + +LS R+ K
Sbjct: 1 MPELPEVETSRRGIEPHLVGATILHAVVRN-GRLRWPVSEEIYRLS--DQPVLSVQRRAK 57
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYI 84
L L L + GM+G++ I
Sbjct: 58 YLLLELPEG-WIIIHLGMSGSLRI 80
>TIGR_CMR|BA_4830 [details] [associations]
symbol:BA_4830 "formamidopyrimidine-DNA glycosylase"
species:198094 "Bacillus anthracis str. Ames" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISS]
[GO:0008534 "oxidized purine nucleobase lesion DNA N-glycosylase
activity" evidence=ISS] HAMAP:MF_00103 InterPro:IPR000191
InterPro:IPR000214 InterPro:IPR010663 InterPro:IPR010979
InterPro:IPR012319 InterPro:IPR015886 InterPro:IPR015887
InterPro:IPR020629 Pfam:PF01149 Pfam:PF06827 Pfam:PF06831
PROSITE:PS01242 PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898
GO:GO:0046872 GO:GO:0006284 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0008270 GO:GO:0006289
eggNOG:COG0266 GO:GO:0008534 SUPFAM:SSF81624 SUPFAM:SSF46946
KO:K10563 ProtClustDB:PRK01103 TIGRFAMs:TIGR00577
RefSeq:NP_847033.1 RefSeq:YP_021475.1 RefSeq:YP_030728.1
ProteinModelPortal:Q81L04 SMR:Q81L04 DNASU:1083979
EnsemblBacteria:EBBACT00000009645 EnsemblBacteria:EBBACT00000016445
EnsemblBacteria:EBBACT00000020438 GeneID:1083979 GeneID:2815023
GeneID:2851564 KEGG:ban:BA_4830 KEGG:bar:GBAA_4830 KEGG:bat:BAS4481
HOGENOM:HOG000020885 OMA:VLRYNDP
BioCyc:BANT260799:GJAJ-4538-MONOMER
BioCyc:BANT261594:GJ7F-4692-MONOMER Uniprot:Q81L04
Length = 276
Score = 221 (82.9 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 78/288 (27%), Positives = 134/288 (46%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASD-FEASVLGKAILSAHRKG 59
MPELPEVE RR +E GK I + +I K++ ++ F+ + G+ I + R+G
Sbjct: 1 MPELPEVENVRRTLENLVTGKTI-EDVIVTYPKIVKRPDDAEIFKEMLKGETIENIKRRG 59
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
K L L + + + + + ++G + + DE K++ DG E
Sbjct: 60 KFLLLYVTN-------YVIVSHLRMEG-------KFLLHQEDEPIDKHTHVRFLFTDGTE 105
Query: 120 LSFTDKRRFAKVRLLN--DPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLD 177
L + D R+F + L + + P+++LGP+ +T + L K IK +LLD
Sbjct: 106 LHYKDVRKFGTMHLFKKGEEMNQMPLADLGPEPFDAELTPQYLHERLQKTNRKIKVVLLD 165
Query: 178 QSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADS--SQ 235
Q + G+GN DEVL++++IHP + A SL+ E + + + +A++ G + +
Sbjct: 166 QRLLVGLGNIYVDEVLFRSQIHPEREASSLTAEEIERIYEATVTTLGEAVKRGGSTIRTY 225
Query: 236 FPSNWIFHSREK------KPGKAFVD-GKKIDFITAGGRTTAYVPELQ 276
S S ++ K G+ V G ++ GGR T Y P Q
Sbjct: 226 INSQGQIGSFQELLNVYGKKGEPCVTCGTILEKTVVGGRGTHYCPICQ 273
>TIGR_CMR|SPO_0146 [details] [associations]
symbol:SPO_0146 "formamidopyrimidine-DNA glycosylase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008534 "oxidized purine nucleobase lesion DNA
N-glycosylase activity" evidence=ISS] HAMAP:MF_00103
InterPro:IPR000191 InterPro:IPR000214 InterPro:IPR010663
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR020629 Pfam:PF01149 Pfam:PF06827 Pfam:PF06831
PROSITE:PS01242 PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006284
GO:GO:0003684 GO:GO:0008270 GO:GO:0006289 eggNOG:COG0266
GO:GO:0008534 SUPFAM:SSF81624 SUPFAM:SSF46946 KO:K10563 OMA:RREKFMN
ProtClustDB:PRK01103 TIGRFAMs:TIGR00577 HOGENOM:HOG000020881
RefSeq:YP_165418.1 ProteinModelPortal:Q5LWT9 GeneID:3194954
KEGG:sil:SPO0146 PATRIC:23373539 Uniprot:Q5LWT9
Length = 283
Score = 218 (81.8 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 77/292 (26%), Positives = 131/292 (44%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVL-GKAILSAHRKG 59
MPELPEVE RR + G I + A+ N+ D A L G+ + R+
Sbjct: 1 MPELPEVETVRRGLAPAMEGAVIAR---AEVNRPDLRWPFPDRMAERLTGQRVERLRRRS 57
Query: 60 KNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
K + L GM+G + + G + Q+ V D K+ +D+G
Sbjct: 58 KYILADLSGGETLLIHLGMSGRMTVSGDPLGQF----VHDHPA-AQKHDHVVFHMDNGAR 112
Query: 120 LSFTDKRRFAKVRLLNDPTSVPP--ISELGPDALLEPMTVDEFTDSLSKKKITIKALLLD 177
++F D RRF + L+ T+ + LGP+ L D +L + +K+ LLD
Sbjct: 113 ITFNDPRRFGAMDLMATATADEHKLLMVLGPEPLGNDFHEDYLVAALKGRNTPVKSALLD 172
Query: 178 QSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADSSQ-- 235
Q ++G+GN E L++A + P + A ++ + L+ I++V+ +A+E G S +
Sbjct: 173 QGIVAGLGNIYVCEALFRAGVSPRRKAGQIAAARVSALVPIIRQVLSEAIEAGGSSLKDF 232
Query: 236 ---------FPSNWIFHSREKKP-GKAFVDGKKIDFITAGGRTTAYVPELQK 277
F ++ + RE +P +A DG + IT GR++ Y + Q+
Sbjct: 233 RQADGELGYFQHSFDVYGREGEPCRRAGCDGT-VQRITQSGRSSFYCAQCQR 283
>TIGR_CMR|SO_4726 [details] [associations]
symbol:SO_4726 "formamidopyrimidine-DNA glycosylase"
species:211586 "Shewanella oneidensis MR-1" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008534 "oxidized purine nucleobase
lesion DNA N-glycosylase activity" evidence=ISS] HAMAP:MF_00103
InterPro:IPR000191 InterPro:IPR000214 InterPro:IPR010663
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 InterPro:IPR020629 Pfam:PF01149 Pfam:PF06827
Pfam:PF06831 PROSITE:PS01242 PROSITE:PS51066 PROSITE:PS51068
SMART:SM00898 GO:GO:0046872 GO:GO:0006284 GO:GO:0003684
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006289
eggNOG:COG0266 GO:GO:0008534 SUPFAM:SSF81624 SUPFAM:SSF46946
KO:K10563 ProtClustDB:PRK01103 TIGRFAMs:TIGR00577 OMA:VLRYNDP
HOGENOM:HOG000020881 RefSeq:NP_720242.1 ProteinModelPortal:Q8E8D9
SMR:Q8E8D9 GeneID:1172305 KEGG:son:SO_4726 PATRIC:23529115
Uniprot:Q8E8D9
Length = 271
Score = 216 (81.1 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 75/270 (27%), Positives = 122/270 (45%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE R+ I + + + +V I+ + + + ++G+ I R+ K
Sbjct: 1 MPELPEVEVTRQGITPYLVDQTVVDLIVRNPSL---RWPVPELAKQIIGQTIRQVRRRAK 57
Query: 61 NLWLRLDSPPFPSF-QFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLE 119
+L +D+ S GM+G++ R DT K+ + L +G
Sbjct: 58 --YLLIDTDAGTSIVHLGMSGSL-----------RILPHDTPV--EKHDHIDLVLANGRI 102
Query: 120 LSFTDKRRFAKVRLLNDPTSVPPISE-LGPDALLEPMTVDEFTDSLSKKKITIKALLLDQ 178
L F D RRF P P+ E LGP+ L + V++ SL+ KK IK L+D
Sbjct: 103 LRFNDPRRFGAWLWCQLPEEAHPLLEKLGPEPLTDAFNVNQLAASLAGKKKAIKLCLMDN 162
Query: 179 SYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADSSQFPS 238
+ G+GN A+E L+ A IHP A + E L+ +K+++ A++ G + +
Sbjct: 163 HIVVGVGNIYANEALFAAGIHPEAEAGKIDIERLTVLVAEVKQILAHAIKQGGTTLKD-- 220
Query: 239 NWIFHSREKKPGKAFVDGKKIDFITAGGRT 268
F + + KPG F +K+ GG T
Sbjct: 221 ---FTNADGKPGY-FA--QKLHVYGRGGET 244
>TIGR_CMR|ECH_0602 [details] [associations]
symbol:ECH_0602 "formamidopyrimidine-DNA glycosylase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006281
"DNA repair" evidence=ISS] [GO:0008534 "oxidized purine nucleobase
lesion DNA N-glycosylase activity" evidence=ISS] InterPro:IPR000191
InterPro:IPR000214 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF01149 Pfam:PF06831
PROSITE:PS01242 PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898
GO:GO:0046872 GO:GO:0006284 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003684 GO:GO:0008270 GO:GO:0006289 eggNOG:COG0266
GO:GO:0008534 SUPFAM:SSF81624 SUPFAM:SSF46946 KO:K10563
TIGRFAMs:TIGR00577 OMA:VLRYNDP HOGENOM:HOG000020881
RefSeq:YP_507413.1 ProteinModelPortal:Q2GGM0 STRING:Q2GGM0
GeneID:3927513 KEGG:ech:ECH_0602 PATRIC:20576656
ProtClustDB:CLSK749253 BioCyc:ECHA205920:GJNR-604-MONOMER
Uniprot:Q2GGM0
Length = 270
Score = 199 (75.1 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 74/287 (25%), Positives = 129/287 (44%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPELPEVE RA+ +GK I+ I + + V+ + + +V ++ RKGK
Sbjct: 1 MPELPEVEIVCRALSSQILGKTIL-DIEVNRYDLRVPVTQNLCDIAV-NSSVFQVLRKGK 58
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL 120
+ L L + + GM+G + Y S +K K++ + L
Sbjct: 59 YIVLVLSNQYYLVIHLGMSGNLI--------YSESYIKQ-----KKHNHVIFHFSNNNLL 105
Query: 121 SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSY 180
F D RRF V LL + G DAL + + + + S K+ TIK+LL++ +
Sbjct: 106 IFNDPRRFGIVILLTYSQYIEFFKNFGVDALSDEFNTN-YLYNTSNKRCTIKSLLMNNKF 164
Query: 181 ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADSSQ----- 235
++GIGN + E L+ A I P + LS C ++ +K ++ ++E G S +
Sbjct: 165 VTGIGNIYSTESLFLAGIAPNRFVKDLSIIECNNIIDGVKNILLYSIENGGSSIKDYTSP 224
Query: 236 ------FPSNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQ 276
F ++++ ++R ++ + + I I GR+T + P Q
Sbjct: 225 FGIRGTFQNHFLVYNRTRQ--QCYKCNSSILVIKQNGRSTFFCPYCQ 269
>UNIPROTKB|Q9KVC5 [details] [associations]
symbol:mutM "Formamidopyrimidine-DNA glycosylase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006281 "DNA repair" evidence=ISS] HAMAP:MF_00103
InterPro:IPR000191 InterPro:IPR000214 InterPro:IPR010663
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 InterPro:IPR020629 Pfam:PF01149 Pfam:PF06827
Pfam:PF06831 PROSITE:PS01242 PROSITE:PS51066 PROSITE:PS51068
SMART:SM00898 GO:GO:0046872 GO:GO:0006284 GO:GO:0003684
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0006281
GO:GO:0006289 eggNOG:COG0266 GO:GO:0008534 SUPFAM:SSF81624
SUPFAM:SSF46946 KO:K10563 ProtClustDB:PRK01103 TIGRFAMs:TIGR00577
OMA:VLRYNDP PIR:G82347 RefSeq:NP_229878.1 ProteinModelPortal:Q9KVC5
SMR:Q9KVC5 DNASU:2614281 GeneID:2614281 KEGG:vch:VC0221
PATRIC:20079488 Uniprot:Q9KVC5
Length = 269
Score = 190 (71.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 53/182 (29%), Positives = 88/182 (48%)
Query: 49 GKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYS 108
G+ IL+ HR+ K L + + GM+G++ I D D +K+
Sbjct: 46 GQTILAIHRRAKYLIIET-AVGSAIVHLGMSGSLRIL-------------DGDFPAAKHD 91
Query: 109 KFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKK 168
+ + G L + D RRF S + LGP+ L E + D K+
Sbjct: 92 HVDLVMTSGKRLRYNDPRRFGAWLWCAPDESHEVLGRLGPEPLTEAFNAEYMMDKARNKR 151
Query: 169 ITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALE 228
I +KA ++D + + G+GN A+E L+ +++HPL+ A SLS E TL+ IK+V++ A++
Sbjct: 152 IAVKAFIMDNAAVVGVGNIYANESLFTSRLHPLRPAHSLSLEEWQTLVANIKQVLQVAIK 211
Query: 229 VG 230
G
Sbjct: 212 QG 213
>TIGR_CMR|VC_0221 [details] [associations]
symbol:VC_0221 "formamidopyrimidine-DNA glycosylase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008534 "oxidized purine nucleobase
lesion DNA N-glycosylase activity" evidence=ISS] HAMAP:MF_00103
InterPro:IPR000191 InterPro:IPR000214 InterPro:IPR010663
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 InterPro:IPR020629 Pfam:PF01149 Pfam:PF06827
Pfam:PF06831 PROSITE:PS01242 PROSITE:PS51066 PROSITE:PS51068
SMART:SM00898 GO:GO:0046872 GO:GO:0006284 GO:GO:0003684
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0006281
GO:GO:0006289 eggNOG:COG0266 GO:GO:0008534 SUPFAM:SSF81624
SUPFAM:SSF46946 KO:K10563 ProtClustDB:PRK01103 TIGRFAMs:TIGR00577
OMA:VLRYNDP PIR:G82347 RefSeq:NP_229878.1 ProteinModelPortal:Q9KVC5
SMR:Q9KVC5 DNASU:2614281 GeneID:2614281 KEGG:vch:VC0221
PATRIC:20079488 Uniprot:Q9KVC5
Length = 269
Score = 190 (71.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 53/182 (29%), Positives = 88/182 (48%)
Query: 49 GKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYS 108
G+ IL+ HR+ K L + + GM+G++ I D D +K+
Sbjct: 46 GQTILAIHRRAKYLIIET-AVGSAIVHLGMSGSLRIL-------------DGDFPAAKHD 91
Query: 109 KFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKK 168
+ + G L + D RRF S + LGP+ L E + D K+
Sbjct: 92 HVDLVMTSGKRLRYNDPRRFGAWLWCAPDESHEVLGRLGPEPLTEAFNAEYMMDKARNKR 151
Query: 169 ITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALE 228
I +KA ++D + + G+GN A+E L+ +++HPL+ A SLS E TL+ IK+V++ A++
Sbjct: 152 IAVKAFIMDNAAVVGVGNIYANESLFTSRLHPLRPAHSLSLEEWQTLVANIKQVLQVAIK 211
Query: 229 VG 230
G
Sbjct: 212 QG 213
>UNIPROTKB|P71565 [details] [associations]
symbol:Rv0944 "Formamidopyrimidine-DNA glycosylase"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0004519
"endonuclease activity" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA;IMP] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0034599 "cellular
response to oxidative stress" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IDA] InterPro:IPR000214 InterPro:IPR010663
InterPro:IPR010979 InterPro:IPR015886 Pfam:PF06827 Pfam:PF06831
PROSITE:PS51066 GO:GO:0005886 GO:GO:0005618 EMBL:BX842575
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0034599
GO:GO:0008270 GO:GO:0003676 GO:GO:0004519 GO:GO:0003906
GO:GO:0006289 GO:GO:0008534 SUPFAM:SSF46946 GO:GO:0016799 KO:K10563
EMBL:CP003248 PIR:F70715 RefSeq:NP_215459.1 RefSeq:YP_006514300.1
HSSP:O50606 ProteinModelPortal:P71565 SMR:P71565
EnsemblBacteria:EBMYCT00000001429 GeneID:13319500 GeneID:885888
KEGG:mtu:Rv0944 KEGG:mtv:RVBD_0944 PATRIC:18150621
TubercuList:Rv0944 HOGENOM:HOG000220372 ProtClustDB:CLSK790849
Uniprot:P71565
Length = 158
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 43/142 (30%), Positives = 65/142 (45%)
Query: 141 PPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHP 200
P LGPDAL ++ D+ L+ IK ++ DQ I+GIGN +DE+L+ AKI P
Sbjct: 5 PQPRALGPDAL--DVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISP 62
Query: 201 LQTAVSLSKESCATLLKCIKEVIEKALE--VGADSSQFP----SNWIFHSREKKPGKAFV 254
TA LS L + + V+ A+ VG ++ S H+R P V
Sbjct: 63 FATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLKGEKRSGLRVHARTGLPCP--V 120
Query: 255 DGKKIDFITAGGRTTAYVPELQ 276
G + ++ ++ Y P Q
Sbjct: 121 CGDTVREVSFADKSFQYCPTCQ 142
>UNIPROTKB|F1NLM0 [details] [associations]
symbol:F1NLM0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0019104 "DNA N-glycosylase
activity" evidence=IEA] [GO:0032074 "negative regulation of
nuclease activity" evidence=IEA] InterPro:IPR010979
InterPro:IPR012319 InterPro:IPR015886 Pfam:PF01149 Pfam:PF06831
PROSITE:PS51068 SMART:SM00898 GO:GO:0005634 GO:GO:0005737
GO:GO:0006979 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003906 GO:GO:0006289 GO:GO:0019104 SUPFAM:SSF81624
SUPFAM:SSF46946 GO:GO:0032074 InterPro:IPR015371 Pfam:PF09292
GeneTree:ENSGT00390000016671 EMBL:AADN02074792 IPI:IPI00603901
Ensembl:ENSGALT00000002409 Uniprot:F1NLM0
Length = 284
Score = 124 (48.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 63/212 (29%), Positives = 91/212 (42%)
Query: 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAI-LSAHRKGK 60
PE PE+ A R IE C G ++ + V E +A ++A +GK
Sbjct: 1 PECPELHLAGRTIET-CGG------LVFEGGVPRSAVGRGP-EVPFSSEAYKVTAASRGK 52
Query: 61 NLWLRLDS-PPFPS----FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELD 115
L L L+ P PS F+FGM+G+ + + R A + +FF
Sbjct: 53 ELRLTLEPLGPGPSQALVFRFGMSGSFRL--CDASSPPRHA----------HLRFFTRES 100
Query: 116 DGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLE-PMTVDEFTDSLSKKKIT--IK 172
L F D RRF RL + P + GP LLE P + +L +
Sbjct: 101 PPRALCFVDPRRFGTWRL---GEAWQP--DRGPCVLLEYPAFRENVLSNLEDAAFDKPVC 155
Query: 173 ALLLDQSYISGIGNWVADEVLYQAKIHPLQTA 204
LL+Q Y +GIGN++ E+LY+AKI P + A
Sbjct: 156 EALLNQKYFNGIGNYLRAEILYRAKIPPFEKA 187
>UNIPROTKB|E1BYL0 [details] [associations]
symbol:NEIL2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016799 "hydrolase activity, hydrolyzing
N-glycosyl compounds" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005876 "spindle microtubule" evidence=IEA]
[GO:0008017 "microtubule binding" evidence=IEA] InterPro:IPR010979
InterPro:IPR012319 InterPro:IPR015886 Pfam:PF01149 Pfam:PF06831
PROSITE:PS51068 SMART:SM00898 GO:GO:0005737 GO:GO:0006284
GO:GO:0003684 GO:GO:0008270 GO:GO:0003906 GO:GO:0005876
GO:GO:0006289 SUPFAM:SSF46946 GO:GO:0016799
GeneTree:ENSGT00510000048740 EMBL:AADN02018294 IPI:IPI00599995
Ensembl:ENSGALT00000026893 OMA:PSVRKFQ Uniprot:E1BYL0
Length = 327
Score = 123 (48.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 44/146 (30%), Positives = 62/146 (42%)
Query: 74 FQFGMTGAIYIKGVAVTQYKR-SAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVR 132
F FG+ G+I ++ R S +W + + + G L F + R
Sbjct: 127 FHFGLFGSI-----RANEFSRASRANKRGDWKDPAPRLVLYFESGGFLVFYNCRMHWCSS 181
Query: 133 LLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEV 192
L+ DPTS D L + D+L + I LLDQ Y SG+GN + +EV
Sbjct: 182 LVADPTS---------DILSAEFHRGQALDALRTSR-PICYTLLDQRYFSGLGNIIKNEV 231
Query: 193 LYQAKIHPLQTAVSLSKESCATLLKC 218
LY KIHPL L++ LL C
Sbjct: 232 LYLVKIHPLTQGSLLAQSDLEHLLDC 257
>RGD|1312033 [details] [associations]
symbol:Neil2 "nei endonuclease VIII-like 2 (E. coli)"
species:10116 "Rattus norvegicus" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005874 "microtubule" evidence=ISO]
[GO:0005876 "spindle microtubule" evidence=IEA;ISO] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0008017 "microtubule
binding" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016799 "hydrolase activity, hydrolyzing
N-glycosyl compounds" evidence=IEA] InterPro:IPR000214
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
Pfam:PF01149 Pfam:PF06831 PROSITE:PS51066 PROSITE:PS51068
RGD:1312033 GO:GO:0005737 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003906 GO:GO:0005876 GO:GO:0006289 SUPFAM:SSF46946
GO:GO:0016799 CTD:252969 GeneTree:ENSGT00510000048740 KO:K10568
OMA:GHQVMKE OrthoDB:EOG4GTKDB EMBL:CH474023 IPI:IPI00373046
RefSeq:NP_001100740.1 UniGene:Rn.225074 Ensembl:ENSRNOT00000014198
GeneID:305957 KEGG:rno:305957 UCSC:RGD:1312033 NextBio:655307
Uniprot:D4ABX3
Length = 330
Score = 123 (48.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 139 SVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKI 198
S PP+ E D L E + ++LS+ + + LLDQ Y SG+GN + +E LY+A+I
Sbjct: 182 SPPPVIEPTCDILSEKFHRGQALEALSQAQ-PVCYTLLDQRYFSGLGNIIKNEALYRARI 240
Query: 199 HPLQTAVSLSKESCATLLKCIKE 221
HPL LS S L+ + E
Sbjct: 241 HPLSLGSFLSPSSLEALVDHVVE 263
>UNIPROTKB|E2RAM2 [details] [associations]
symbol:NEIL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032074 "negative regulation of nuclease
activity" evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
Pfam:PF01149 Pfam:PF06831 PROSITE:PS51068 SMART:SM00898
GO:GO:0005634 GO:GO:0005737 GO:GO:0006979 GO:GO:0006284
GO:GO:0003684 GO:GO:0008270 GO:GO:0003906 GO:GO:0006289
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 CTD:79661 KO:K10567
OMA:GTSLQQD GO:GO:0032074 InterPro:IPR015371 Pfam:PF09292
GeneTree:ENSGT00390000016671 EMBL:AAEX03016327 RefSeq:XP_854395.1
ProteinModelPortal:E2RAM2 Ensembl:ENSCAFT00000028586 GeneID:611615
KEGG:cfa:611615 NextBio:20897151 Uniprot:E2RAM2
Length = 389
Score = 123 (48.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 88/324 (27%), Positives = 131/324 (40%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPE PE+ A R + C G +V + ++ G A FE+S +SA +GK
Sbjct: 1 MPEGPELHLASRFVNAACAG--LVFGGAVETSRCSRG-PAVPFESSAYR---ISASARGK 54
Query: 61 NLWLRLDSPP--FPS-------FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFF 111
L L L P P+ F+FGMTG+ R A +D P+ F
Sbjct: 55 ELRLALRPLPGALPAREPLALVFRFGMTGSF-----------RLAPRDA--LPAHAHLRF 101
Query: 112 VELDDG--LELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDE-FTDSLSKKK 168
G L L F D RRF + L D P GP LLE E +L+ K
Sbjct: 102 YTAPPGPRLALCFVDARRFGRWHLGGD---WQP--GRGPCVLLEYERFRENVLRNLAHKA 156
Query: 169 IT--IKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKA 226
I LLDQ + +GIGN++ E+L++ I P + A ++ E+ ++ + +
Sbjct: 157 FEQPICEALLDQRFFNGIGNYLRAEILHRLGIPPFEKARTVL-EALQQRRPSPEQTLSQK 215
Query: 227 LEVGADSSQFPSNWIFHSREKKP----GKAF-VDGKKIDFITAGGRTTAY-VPELQKLNG 280
+ S + HS K+ GK + + + DF Y VP + L
Sbjct: 216 IRAKLQSPDLLE--LCHSVPKEVVQLGGKGYGPESGEEDFAAFRAWLRCYGVPGMSSLRD 273
Query: 281 VQAAKAV---GKPRKQAPKGEDSK 301
+ + + G P APKG S+
Sbjct: 274 -RRGRTIWFQGDPGPLAPKGGKSR 296
>UNIPROTKB|F1MGF3 [details] [associations]
symbol:NEIL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl
compounds" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
Pfam:PF01149 Pfam:PF06831 PROSITE:PS51068 SMART:SM00898
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003906
GO:GO:0006289 SUPFAM:SSF81624 SUPFAM:SSF46946 GO:GO:0016799
GeneTree:ENSGT00390000016671 EMBL:DAAA02052491 IPI:IPI00867343
Ensembl:ENSBTAT00000052162 ArrayExpress:F1MGF3 Uniprot:F1MGF3
Length = 221
Score = 113 (44.8 bits), Expect = 0.00033, P = 0.00033
Identities = 59/208 (28%), Positives = 87/208 (41%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPE PE+ A + E C +++V + + V FE+S +SA +GK
Sbjct: 1 MPEGPELHLASHFVNEAC--RELVFGGCVEKSPVSRNPEVP-FESSAYS---ISALARGK 54
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG-LE 119
L RL P P Q + +T + D P + +F+ L
Sbjct: 55 EL--RLTLSPLPGAQPHREPLALVFRFGMTGSFQLVPSDALP-PHAHLRFYTAPPGPRLA 111
Query: 120 LSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDE-FTDSLSKKKIT--IKALLL 176
L F D RRF + L + P GP LLE E +L+ K I LL
Sbjct: 112 LCFVDIRRFGRWDLGGE---WQP--GRGPCVLLEYEQFRENVLRNLADKAFDRPICEALL 166
Query: 177 DQSYISGIGNWVADEVLYQAKIHPLQTA 204
DQ + +GIGN++ E+LY+ +I P + A
Sbjct: 167 DQRFFNGIGNYLRAEILYRLRIPPFEKA 194
>UNIPROTKB|P64158 [details] [associations]
symbol:nei1 "Endonuclease 8 1" species:1773 "Mycobacterium
tuberculosis" [GO:0000703 "oxidized pyrimidine nucleobase lesion
DNA N-glycosylase activity" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IDA]
[GO:0004844 "uracil DNA N-glycosylase activity" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA;IMP] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006979 "response to
oxidative stress" evidence=IDA] [GO:0008534 "oxidized purine
nucleobase lesion DNA N-glycosylase activity" evidence=IDA]
[GO:0034599 "cellular response to oxidative stress" evidence=IMP]
InterPro:IPR000214 InterPro:IPR010663 InterPro:IPR010979
InterPro:IPR012319 InterPro:IPR015886 InterPro:IPR015887
Pfam:PF01149 Pfam:PF06827 Pfam:PF06831 PROSITE:PS01242
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00898 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
GO:GO:0006284 GO:GO:0003684 GO:GO:0034599 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 EMBL:BX842579 GO:GO:0004844
GO:GO:0006289 PIR:G70865 RefSeq:NP_216980.1 RefSeq:NP_337025.1
RefSeq:YP_006515901.1 ProteinModelPortal:P64158 SMR:P64158
EnsemblBacteria:EBMYCT00000002822 EnsemblBacteria:EBMYCT00000069873
GeneID:13319176 GeneID:888500 GeneID:925782 KEGG:mtc:MT2539
KEGG:mtu:Rv2464c KEGG:mtv:RVBD_2464c PATRIC:18127340
TubercuList:Rv2464c eggNOG:COG0266 HOGENOM:HOG000020880 KO:K05522
OMA:HTPEAMG ProtClustDB:CLSK791864 GO:GO:0008534 GO:GO:0000703
SUPFAM:SSF81624 SUPFAM:SSF46946 Uniprot:P64158
Length = 268
Score = 114 (45.2 bits), Expect = 0.00043, P = 0.00043
Identities = 41/161 (25%), Positives = 71/161 (44%)
Query: 41 SDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDT 100
+D +++ G+ + A GK+L+ P G+ G T++ R T
Sbjct: 33 ADSASALNGRVLRRASAWGKHLFHHYVGGPVVHVHLGLYGTF-------TEWARP----T 81
Query: 101 DEW-PSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDE 159
D W P + + + G E TD R ++D ++ LGPD L
Sbjct: 82 DGWLPEPAGQVRMRMV-GAEFG-TDLRGPTVCESIDDGEVADVVARLGPDPLRSDANPSS 139
Query: 160 FTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHP 200
++K + I ALL+DQ+ I+G+GN +E+L++ +I P
Sbjct: 140 AWSRITKSRRPIGALLMDQTVIAGVGNVYRNELLFRHRIDP 180
>UNIPROTKB|F1SJ67 [details] [associations]
symbol:NEIL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032074 "negative regulation of nuclease activity"
evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
Pfam:PF01149 Pfam:PF06831 PROSITE:PS51068 SMART:SM00898
GO:GO:0005634 GO:GO:0005737 GO:GO:0006979 GO:GO:0006284
GO:GO:0003684 GO:GO:0008270 GO:GO:0003906 GO:GO:0006289
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 CTD:79661 KO:K10567
OMA:GTSLQQD GO:GO:0032074 InterPro:IPR015371 Pfam:PF09292
GeneTree:ENSGT00390000016671 EMBL:CT990537 RefSeq:XP_001924578.1
UniGene:Ssc.18497 Ensembl:ENSSSCT00000002107 GeneID:100155341
KEGG:ssc:100155341 Uniprot:F1SJ67
Length = 389
Score = 115 (45.5 bits), Expect = 0.00069, P = 0.00069
Identities = 63/219 (28%), Positives = 92/219 (42%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPE PE+ A + E C G+ + + + + FE+S +SA +GK
Sbjct: 1 MPEGPELHLASHFVNEAC-GELVFGGCV--EKSPVSRNPEVPFESSAYH---ISALARGK 54
Query: 61 NLWLRLD-----SPPFPS----FQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFF 111
L L L PP F+FGMTG+ + R A+ P + +F+
Sbjct: 55 ELRLTLSPLPGAQPPQEPLALVFRFGMTGSFQL-------VPRDALP-----PHAHLRFY 102
Query: 112 VELDDG-LELSFTDKRRFAKVRLLN--DPTSVPPISELGPDALLEPMTVDE-FTDSLSKK 167
L L F D RRF + L DP GP LLE E +L+ K
Sbjct: 103 TAPPSPQLALCFVDIRRFGRWELGGEWDPGR-------GPCVLLEYEQFRENVLRNLADK 155
Query: 168 KIT--IKALLLDQSYISGIGNWVADEVLYQAKIHPLQTA 204
I LLDQ + +GIGN++ E+L++ +I P + A
Sbjct: 156 AFDRPICEALLDQRFFNGIGNYLRAEILHRLRIPPFEKA 194
>MGI|MGI:2686058 [details] [associations]
symbol:Neil2 "nei like 2 (E. coli)" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005874 "microtubule"
evidence=IDA] [GO:0005876 "spindle microtubule" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008017 "microtubule binding" evidence=IDA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016798 "hydrolase activity, acting on glycosyl
bonds" evidence=IEA] [GO:0016799 "hydrolase activity, hydrolyzing
N-glycosyl compounds" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000214 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 Pfam:PF01149 Pfam:PF06831 PROSITE:PS01242
PROSITE:PS51066 PROSITE:PS51068 MGI:MGI:2686058 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0006284 GO:GO:0003684
GO:GO:0008270 GO:GO:0008017 GO:GO:0003906 GO:GO:0005876
GO:GO:0006289 SUPFAM:SSF46946 GO:GO:0016799 eggNOG:NOG73546
HOGENOM:HOG000069913 HOVERGEN:HBG082014 OrthoDB:EOG4GTKDB
EMBL:AY518221 IPI:IPI00400063 UniGene:Mm.239490
ProteinModelPortal:Q6R2P8 STRING:Q6R2P8 PhosphoSite:Q6R2P8
PRIDE:Q6R2P8 InParanoid:Q6R2P8 CleanEx:MM_NEIL2
Genevestigator:Q6R2P8 Uniprot:Q6R2P8
Length = 329
Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 139 SVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKI 198
S P+ E D L E + ++LS+ + + LLDQ Y SG+GN + +E LY+A+I
Sbjct: 181 SXXPVIEPTCDILSEKFHRGQALEALSQAQ-PVCYTLLDQKYFSGLGNIIKNEALYRARI 239
Query: 199 HPLQTAVSLSKES 211
HPL LS S
Sbjct: 240 HPLSLGSCLSSSS 252
>UNIPROTKB|F1MC42 [details] [associations]
symbol:NEIL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032074 "negative regulation of nuclease activity"
evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
Pfam:PF01149 Pfam:PF06831 PROSITE:PS51068 SMART:SM00898
GO:GO:0005634 GO:GO:0005737 GO:GO:0006979 GO:GO:0006284
GO:GO:0003684 GO:GO:0008270 GO:GO:0003906 GO:GO:0006289
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 OMA:GTSLQQD
GO:GO:0032074 InterPro:IPR015371 Pfam:PF09292
GeneTree:ENSGT00390000016671 EMBL:DAAA02052491 IPI:IPI00695232
Ensembl:ENSBTAT00000046326 ArrayExpress:F1MC42 Uniprot:F1MC42
Length = 331
Score = 113 (44.8 bits), Expect = 0.00086, P = 0.00086
Identities = 59/208 (28%), Positives = 87/208 (41%)
Query: 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGK 60
MPE PE+ A + E C +++V + + V FE+S +SA +GK
Sbjct: 1 MPEGPELHLASHFVNEAC--RELVFGGCVEKSPVSRNPEVP-FESSAYS---ISALARGK 54
Query: 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG-LE 119
L RL P P Q + +T + D P + +F+ L
Sbjct: 55 EL--RLTLSPLPGAQPHREPLALVFRFGMTGSFQLVPSDALP-PHAHLRFYTAPPGPRLA 111
Query: 120 LSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDE-FTDSLSKKKIT--IKALLL 176
L F D RRF + L + P GP LLE E +L+ K I LL
Sbjct: 112 LCFVDIRRFGRWDLGGE---WQP--GRGPCVLLEYEQFRENVLRNLADKAFDRPICEALL 166
Query: 177 DQSYISGIGNWVADEVLYQAKIHPLQTA 204
DQ + +GIGN++ E+LY+ +I P + A
Sbjct: 167 DQRFFNGIGNYLRAEILYRLRIPPFEKA 194
>UNIPROTKB|E2R6L5 [details] [associations]
symbol:NEIL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008017 "microtubule binding" evidence=IEA]
[GO:0005876 "spindle microtubule" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016799 "hydrolase activity,
hydrolyzing N-glycosyl compounds" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
Pfam:PF01149 Pfam:PF06831 PROSITE:PS51068 GO:GO:0005737
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003906
GO:GO:0005876 GO:GO:0006289 SUPFAM:SSF46946 GO:GO:0016799
CTD:252969 GeneTree:ENSGT00510000048740 KO:K10568 OMA:GHQVMKE
EMBL:AAEX03014319 RefSeq:XP_543204.3 Ensembl:ENSCAFT00000012710
GeneID:486078 KEGG:cfa:486078 NextBio:20859924 Uniprot:E2R6L5
Length = 335
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 42/146 (28%), Positives = 68/146 (46%)
Query: 76 FGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLN 135
FG+ G+I++ ++ K+ A K D W + + L G L+F + + + L
Sbjct: 137 FGLFGSIWVN--EFSRAKK-ANKRGD-WRDPIPRLVLYLSGGSFLAFYNCQMSWRSSALV 192
Query: 136 DPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQ 195
PTS D L E + ++L +++ + LLDQ Y SG+GN + +E LY+
Sbjct: 193 QPTS---------DILSEKFHRGQALEALGREQ-PVCYTLLDQRYFSGLGNIIKNEALYR 242
Query: 196 AKIHPLQTAVSLSKESCATLLKCIKE 221
A IHPL LS L+ + E
Sbjct: 243 AGIHPLSLGSLLSPRHLEALVDHVVE 268
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 408 361 0.00082 117 3 11 23 0.47 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 608 (65 KB)
Total size of DFA: 217 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.97u 0.08s 31.05t Elapsed: 00:00:01
Total cpu time: 30.98u 0.08s 31.06t Elapsed: 00:00:01
Start: Fri May 10 19:30:50 2013 End: Fri May 10 19:30:51 2013