Query 015345
Match_columns 408
No_of_seqs 150 out of 1167
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twl_A Formamidopyrimidine-DNA 100.0 5.4E-85 1.9E-89 646.6 25.7 286 1-286 1-286 (310)
2 3u6p_A Formamidopyrimidine-DNA 100.0 1.1E-78 3.7E-83 592.3 23.7 259 2-277 1-273 (273)
3 1k82_A Formamidopyrimidine-DNA 100.0 6.7E-78 2.3E-82 585.3 27.6 257 2-277 1-268 (268)
4 2xzf_A Formamidopyrimidine-DNA 100.0 4.4E-78 1.5E-82 587.4 21.9 259 2-278 1-271 (271)
5 1ee8_A MUTM (FPG) protein; bet 100.0 1.6E-75 5.4E-80 568.1 24.5 249 2-278 1-264 (266)
6 1k3x_A Endonuclease VIII; hydr 100.0 1E-73 3.5E-78 554.2 19.0 251 2-277 1-262 (262)
7 3vk8_A Probable formamidopyrim 100.0 2.8E-72 9.6E-77 552.4 16.7 250 1-279 1-289 (295)
8 1tdh_A NEI endonuclease VIII-l 100.0 1.9E-61 6.4E-66 485.9 7.5 243 1-279 1-289 (364)
9 3w0f_A Endonuclease 8-like 3; 100.0 1.3E-58 4.4E-63 452.1 15.7 252 3-278 2-282 (287)
10 3doa_A Fibrinogen binding prot 96.9 0.0067 2.3E-07 58.9 11.9 65 146-226 167-232 (288)
11 3r8n_M 30S ribosomal protein S 96.7 0.0019 6.5E-08 54.8 5.6 49 168-219 11-59 (114)
12 2vqe_M 30S ribosomal protein S 96.3 0.004 1.4E-07 53.7 5.1 51 168-221 12-62 (126)
13 3iz6_M 40S ribosomal protein S 96.0 0.0078 2.7E-07 53.5 5.5 51 167-220 22-72 (152)
14 2xzm_M RPS18E; ribosome, trans 96.0 0.0083 2.9E-07 53.5 5.7 51 168-221 25-75 (155)
15 3u5c_S 40S ribosomal protein S 95.9 0.0057 2E-07 54.0 4.3 50 168-220 25-74 (146)
16 3j20_O 30S ribosomal protein S 95.9 0.0066 2.3E-07 53.8 4.4 51 168-221 18-68 (148)
17 3bbn_M Ribosomal protein S13; 90.5 0.069 2.4E-06 47.0 1.0 47 168-218 57-103 (145)
18 1mu5_A Type II DNA topoisomera 89.0 1.3 4.4E-05 45.7 9.2 66 155-222 237-304 (471)
19 1qyr_A KSGA, high level kasuga 80.3 2 6.8E-05 40.3 5.3 51 161-220 199-249 (252)
20 3fut_A Dimethyladenosine trans 73.7 3.8 0.00013 38.9 5.3 59 158-220 209-268 (271)
21 2zbk_B Type 2 DNA topoisomeras 72.7 18 0.00061 37.8 10.5 66 155-222 236-303 (530)
22 3gru_A Dimethyladenosine trans 71.8 4.1 0.00014 39.3 5.1 65 159-223 217-289 (295)
23 3tqs_A Ribosomal RNA small sub 71.8 4 0.00014 38.3 4.9 48 163-219 207-254 (255)
24 3uzu_A Ribosomal RNA small sub 69.4 4.4 0.00015 38.6 4.6 49 163-220 225-273 (279)
25 2jrp_A Putative cytoplasmic pr 67.5 4 0.00014 32.4 3.2 29 249-279 33-61 (81)
26 3j20_Y 30S ribosomal protein S 67.3 3.9 0.00013 29.4 2.9 28 246-277 18-45 (50)
27 4esj_A Type-2 restriction enzy 66.4 2.4 8.1E-05 40.2 2.0 30 248-279 35-66 (257)
28 1qam_A ERMC' methyltransferase 51.4 9.2 0.00032 35.1 3.2 43 163-220 198-240 (244)
29 2jne_A Hypothetical protein YF 49.8 13 0.00043 30.6 3.4 25 254-278 66-90 (101)
30 3ftd_A Dimethyladenosine trans 45.9 12 0.00042 34.6 3.2 45 163-220 201-245 (249)
31 2jne_A Hypothetical protein YF 45.5 15 0.00053 30.1 3.2 25 248-278 33-57 (101)
32 2avu_E Flagellar transcription 45.1 5.6 0.00019 36.4 0.6 30 249-280 136-165 (192)
33 2gqf_A Hypothetical protein HI 38.5 63 0.0022 31.7 7.2 62 153-220 263-326 (401)
34 3u50_C Telomerase-associated p 37.3 17 0.00059 32.5 2.6 55 214-278 2-68 (172)
35 3rhi_A DNA-binding protein HU; 36.4 46 0.0016 26.1 4.7 65 206-273 18-84 (93)
36 3v76_A Flavoprotein; structura 33.3 61 0.0021 32.1 6.2 63 153-221 282-346 (417)
37 2jrp_A Putative cytoplasmic pr 33.1 30 0.001 27.3 3.1 11 249-261 4-14 (81)
38 3vhs_A ATPase wrnip1; zinc fin 33.1 13 0.00044 23.3 0.7 9 270-278 7-15 (29)
39 2akl_A PHNA-like protein PA012 32.7 19 0.00064 31.1 1.9 67 248-329 28-95 (138)
40 3cng_A Nudix hydrolase; struct 32.2 22 0.00074 30.9 2.4 27 249-277 5-33 (189)
41 1l1o_C Replication protein A 7 31.4 25 0.00086 31.2 2.7 25 249-278 45-71 (181)
42 2k4x_A 30S ribosomal protein S 30.4 30 0.001 25.1 2.5 29 246-278 17-45 (55)
43 2o97_B NS1, HU-1, DNA-binding 29.3 85 0.0029 24.3 5.2 55 205-260 14-70 (90)
44 1pft_A TFIIB, PFTFIIBN; N-term 25.9 50 0.0017 22.8 2.9 28 248-279 6-34 (50)
45 1owf_B IHF-beta, integration H 25.4 91 0.0031 24.3 4.7 55 205-260 15-71 (94)
46 2js4_A UPF0434 protein BB2007; 24.3 52 0.0018 25.0 2.9 27 249-279 10-36 (70)
47 1mul_A NS2, HU-2, DNA binding 24.0 1.2E+02 0.004 23.4 5.1 55 205-260 14-70 (90)
48 2jr6_A UPF0434 protein NMA0874 23.4 38 0.0013 25.6 2.0 28 249-280 10-37 (68)
49 2hf1_A Tetraacyldisaccharide-1 23.4 52 0.0018 24.9 2.7 28 249-280 10-37 (68)
50 1twf_I B12.6, DNA-directed RNA 23.2 66 0.0023 26.7 3.7 29 249-279 6-36 (122)
51 2pk7_A Uncharacterized protein 22.7 48 0.0017 25.1 2.4 27 249-279 10-36 (69)
52 2np2_A HBB; protein-DNA comple 22.6 1.5E+02 0.0052 23.7 5.7 55 205-260 27-84 (108)
53 3m7n_A Putative uncharacterize 22.3 41 0.0014 29.8 2.3 29 240-278 137-165 (179)
54 2h1r_A Dimethyladenosine trans 22.2 81 0.0028 29.6 4.5 31 189-220 260-290 (299)
55 3na7_A HP0958; flagellar bioge 21.8 13 0.00043 34.9 -1.3 35 241-278 193-231 (256)
56 1fo5_A Thioredoxin; disulfide 21.7 23 0.00079 25.5 0.5 11 269-279 11-21 (85)
57 1vk6_A NADH pyrophosphatase; 1 21.7 44 0.0015 31.5 2.5 28 247-278 107-134 (269)
58 2jny_A Uncharacterized BCR; st 21.2 61 0.0021 24.5 2.7 28 249-280 12-39 (67)
59 2i0z_A NAD(FAD)-utilizing dehy 20.5 2.1E+02 0.0071 28.0 7.4 63 154-221 301-368 (447)
No 1
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=100.00 E-value=5.4e-85 Score=646.64 Aligned_cols=286 Identities=85% Similarity=1.296 Sum_probs=250.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEEEeccCCceeccCChhhHHHhhcCCeEeeeeeeeeEEEEEeCCCCcceeeeceee
Q 015345 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG 80 (408)
Q Consensus 1 MPELPEVe~~~~~L~~~l~Gk~I~~V~v~~~~~v~~~~~~~~f~~~L~G~~I~~V~RrGK~L~~~l~~~~~L~vHLGMtG 80 (408)
||||||||++++.|++.++|++|++|++..++.+++++.+.+|.+.|.|++|++|.||||||||.|+++.+|++||||+|
T Consensus 1 MPELPEVetvrr~L~~~l~G~~I~~v~v~~~~~~~~~~~~~~f~~~L~G~~I~~v~RrGKyL~~~l~~~~~L~~HLgMsG 80 (310)
T 3twl_A 1 MPELPEVEAARRAIEENCLGKKIKRVIIADDNKVIHGISPSDFQTSILGKTIISARRKGKNLWLELDSPPFPSFQFGMAG 80 (310)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCBEEEEEECCCTTTBCSSCHHHHHHHHTTCBEEEEEEETTEEEEEESSSCEEEEECTTTC
T ss_pred CCcHHHHHHHHHHHHHHcCCCEEEEEEEcCCcceeccCChHHHHHHcCCCEEEEEEeeeeEEEEEeCCCCEEEEEcCCce
Confidence 99999999999999999999999999998656666666789999999999999999999999999998889999999999
Q ss_pred eEEEecccchhcccccccCCCCCCCCccEEEEEEcCCceEEEeecCcccEEEEcCCCCCCCcccccCCCCCCCCCCHHHH
Q 015345 81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEF 160 (408)
Q Consensus 81 ~l~i~~~~~~~y~~~~~~~~~~~p~kh~~l~l~~~dg~~L~f~D~RrfG~i~l~~~~~~~~~l~~LGPDpL~~~f~~e~f 160 (408)
+|++.+.+..+|.+....+.+.||++|.||+|.|+||..|.|+|+|+||+|+|++..+..+.+.+||||||+++|+.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~kh~~v~l~l~~g~~L~f~D~RrfG~~~l~~~~~~~~~l~~LGPDpL~~~f~~~~~ 160 (310)
T 3twl_A 81 AIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEF 160 (310)
T ss_dssp EEEEC-----------------CCCTTEEEEEEETTSCEEEEECSSSCCEEEEESCGGGSTTGGGCCCBTTTSCCCHHHH
T ss_pred EEEEecCCcccccccccccccCCCCceeEEEEEECCCCEEEEEecCcCcEEEEecchhhCchhhhcCCCCCCCcCCHHHH
Confidence 99997654444433332334567889999999999999999999999999999987767788999999999999999999
Q ss_pred HHHHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCce
Q 015345 161 TDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADSSQFPSNW 240 (408)
Q Consensus 161 ~~~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s~~f~~~~ 240 (408)
.++|++++++||++||||++||||||||+|||||+|||||.+++++||++++.+|+++|++||+.||+.||+++.|+..|
T Consensus 161 ~~~l~~~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~vL~~ai~~gg~~g~f~~~~ 240 (310)
T 3twl_A 161 AESLAKKKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKAVEVDADSSQFPSNW 240 (310)
T ss_dssp HHHHHTCCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTTCGGGSCTTC
T ss_pred HHHHhCCcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCceEEEEECCceeEEcCCCCCCCccchhhh
Q 015345 241 IFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLNGVQAAKA 286 (408)
Q Consensus 241 ~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~~~~~~~~ 286 (408)
.||+|+|+||+|++||++|.++++|||+|||||.||++++..++.+
T Consensus 241 ~vygR~g~pC~~~~CG~~I~~~~~~gR~t~~CP~CQ~~~~~~~~~~ 286 (310)
T 3twl_A 241 IFHNREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLYGKDAEKA 286 (310)
T ss_dssp GGGGTTSCTTSCEETTEECEECCE------ECTTTCCCCHHHHHHH
T ss_pred EEeCcCCCCCCCCCCCCeEEEEEECCcccEECCCCcCCCCCCcchh
Confidence 9999999999988999999999999999999999999988876665
No 2
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=100.00 E-value=1.1e-78 Score=592.31 Aligned_cols=259 Identities=29% Similarity=0.434 Sum_probs=233.7
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEEEeccCCceeccC-ChhhHHHhhcCCeEeeeeeeeeEEEEEeCCCCcceeeeceee
Q 015345 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGV-SASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTG 80 (408)
Q Consensus 2 PELPEVe~~~~~L~~~l~Gk~I~~V~v~~~~~v~~~~-~~~~f~~~L~G~~I~~V~RrGK~L~~~l~~~~~L~vHLGMtG 80 (408)
|||||||++++.|++.++|++|+.|++.. +++++.+ ++++|.+.|.|++|++|.||||||||+|++ .+|++||||+|
T Consensus 1 PELPEVetv~r~L~~~l~G~~I~~v~v~~-~~~~~~~~~~~~~~~~L~G~~i~~v~rrGK~L~~~l~~-~~L~~HLgM~G 78 (273)
T 3u6p_A 1 PQLPEVETIRRTLLPLIVGKTIEDVRIFW-PNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDR-DALISHLRMEG 78 (273)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBEEEEEESC-GGGEEESSSHHHHHHHHTTCBCCEEEEETTEEEEECSS-EEEEEECTTTC
T ss_pred CCchHHHHHHHHHHHHhCCCEEEEEEEcC-cccccCCCChHHHHHHhCCCEEEEEEeeeeEEEEEECC-CeEEEeCCcEE
Confidence 99999999999999999999999999974 6665544 689999999999999999999999999987 78999999999
Q ss_pred eEEEecccchhcccccccCCCCCCCCccEEEEEEcCCceEEEeecCcccEEEEcCCC--CCCCcccccCCCCCCCCCCHH
Q 015345 81 AIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVD 158 (408)
Q Consensus 81 ~l~i~~~~~~~y~~~~~~~~~~~p~kh~~l~l~~~dg~~L~f~D~RrfG~i~l~~~~--~~~~~l~~LGPDpL~~~f~~e 158 (408)
+|++... +.++++|.||+|+|+||..|.|+|+|+||.|++++.. ..++.+.+||||||+++|+.+
T Consensus 79 ~~~~~~~-------------~~~~~~h~~v~l~~~~g~~l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~ 145 (273)
T 3u6p_A 79 RYAVASA-------------LEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPA 145 (273)
T ss_dssp EEEEEET-------------TSCCCTTEEEEEEETTSEEEEEECTTCCCEEEEEEHHHHTTSTTTTTCCCCTTSTTSCHH
T ss_pred EEEEecC-------------CCCCCcceEEEEEECCCCEEEEEecCcCCEEEEEcchhhccchhhhhcCCCCCcccCCHH
Confidence 9998642 3456799999999999999999999999999999754 256789999999999999999
Q ss_pred HHHHHHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC-----
Q 015345 159 EFTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADS----- 233 (408)
Q Consensus 159 ~f~~~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s----- 233 (408)
+|.++|++++++||++||||++||||||||+|||||+|||||.+++++||++++.+|+++|+.||+.||+.||++
T Consensus 146 ~~~~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~~~~ 225 (273)
T 3u6p_A 146 VLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYV 225 (273)
T ss_dssp HHHHHHHTCCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHhcCcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ------CCCCCceEEEccCCCCCCCCCCCCceEEEEECCceeEEcCCCCC
Q 015345 234 ------SQFPSNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQK 277 (408)
Q Consensus 234 ------~~f~~~~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~ 277 (408)
+.|+..|.||+|+|+||+ +||++|.++++|||+|||||.||+
T Consensus 226 ~~~g~~g~~~~~~~VygR~g~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 226 NTQGEAGTFQHHLYVYGRQGNPCK--RCGTPIEKTVVAGRGTHYCPRCQR 273 (273)
T ss_dssp -----------CCSSTTCTTSBCT--TTCCBCEEEEETTEEEEECTTTCC
T ss_pred cCCCCcCcccceEEEeCCCcCCCC--CCCCeEEEEEECCCCeEECCCCCC
Confidence 468889999999999999 999999999999999999999996
No 3
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=6.7e-78 Score=585.35 Aligned_cols=257 Identities=30% Similarity=0.470 Sum_probs=236.2
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEEEeccCCceeccCChhhHHHhhcCCeEeeeeeeeeEEEEEeCCCCcceeeeceeee
Q 015345 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (408)
Q Consensus 2 PELPEVe~~~~~L~~~l~Gk~I~~V~v~~~~~v~~~~~~~~f~~~L~G~~I~~V~RrGK~L~~~l~~~~~L~vHLGMtG~ 81 (408)
|||||||++++.|++.++|++|+.|++.. +++ +.+.+.+ .+.|.|++|++|.||||||||+|+++ +|++||||+|+
T Consensus 1 PELPEVetv~r~L~~~~~G~~I~~v~v~~-~~~-~~~~~~~-~~~L~G~~i~~v~rrGK~L~~~l~~~-~l~~HLgM~G~ 76 (268)
T 1k82_A 1 PELPEVETSRRGIEPHLVGATILHAVVRN-GRL-RWPVSEE-IYRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGS 76 (268)
T ss_dssp CCHHHHHHHHHHHHHHHBTCEEEEEEESC-CBS-SSBCCHH-HHHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCE
T ss_pred CCchhHHHHHHHHHHHhCCCEEEEEEEcC-CCc-cCCCchh-hhhcCCCEEEEEEEEccEEEEEeCCC-EEEEECCCeEE
Confidence 99999999999999999999999999974 553 3344455 67799999999999999999999886 89999999999
Q ss_pred EEEecccchhcccccccCCCCCCCCccEEEEEEcCCceEEEeecCcccEEEEcCCCCCCCcccccCCCCCCCCCCHHHHH
Q 015345 82 IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFT 161 (408)
Q Consensus 82 l~i~~~~~~~y~~~~~~~~~~~p~kh~~l~l~~~dg~~L~f~D~RrfG~i~l~~~~~~~~~l~~LGPDpL~~~f~~e~f~ 161 (408)
|++... ++++++|+||+|+|+||..|.|+|+|+||.|+++++.+.++.+.+||||||+++|+.++|.
T Consensus 77 ~~~~~~-------------~~~~~kh~~v~l~~~~g~~l~f~D~R~fG~~~l~~~~~~~~~l~~LGpdpL~~~f~~~~~~ 143 (268)
T 1k82_A 77 LRILPE-------------ELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLH 143 (268)
T ss_dssp EEEESS-------------SCCCCTTCCEEEEETTSCEEEEECSSCCCEEEEESCSSSSTTTTTCCCCTTSTTSCHHHHH
T ss_pred EEEecC-------------CCCCCCceEEEEEECCCCEEEEEecCCCcEEEEECchhhhhHhhcCCCCCCCCcCCHHHHH
Confidence 998632 2345789999999999999999999999999988554567889999999999999999999
Q ss_pred HHHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC--------
Q 015345 162 DSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADS-------- 233 (408)
Q Consensus 162 ~~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s-------- 233 (408)
++|++++++||++||||++||||||||+|||||+|||||.+++++||++++.+|+++|+.||+.||+.||++
T Consensus 144 ~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~d~~~~~ 223 (268)
T 1k82_A 144 QKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSD 223 (268)
T ss_dssp HHHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ---CCCCCceEEEccCCCCCCCCCCCCceEEEEECCceeEEcCCCCC
Q 015345 234 ---SQFPSNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQK 277 (408)
Q Consensus 234 ---~~f~~~~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~ 277 (408)
+.|+..|.||+|+|+||+ +||++|.++++|||+|||||.||+
T Consensus 224 g~~G~f~~~~~VygR~g~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 268 (268)
T 1k82_A 224 GKPGYFAQELQVYGRKGEPCR--VCGTPIVATKHAQRATFYCRQCQK 268 (268)
T ss_dssp --CCSCGGGCSSTTCTTSBCT--TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCcccceEEEcccCCCCCC--CCCCEeeEEEECCCceEECCCCCC
Confidence 357889999999999999 999999999999999999999996
No 4
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=100.00 E-value=4.4e-78 Score=587.40 Aligned_cols=259 Identities=27% Similarity=0.419 Sum_probs=236.1
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEEEeccCCceeccCChhhHHHhhcCCeEeeeeeeeeEEEEEeCCCCcceeeeceeee
Q 015345 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (408)
Q Consensus 2 PELPEVe~~~~~L~~~l~Gk~I~~V~v~~~~~v~~~~~~~~f~~~L~G~~I~~V~RrGK~L~~~l~~~~~L~vHLGMtG~ 81 (408)
|||||||++++.|++.++|++|+.|++.. +++..++. .+|.+.|.|++|++|.||||||||+|+++.+|++||||+|+
T Consensus 1 PELPEVetv~r~L~~~~~G~~I~~v~v~~-~~l~~~~~-~~~~~~L~G~~i~~v~rrGK~L~~~l~~g~~L~~HLgM~G~ 78 (271)
T 2xzf_A 1 PELPEVETVRRELEKRIVGQKIISIEATY-PRMVLTGF-EQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGK 78 (271)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBCCEEEESC-GGGBTTCH-HHHHHHHTTCBEEEEEEETTEEEEEETTTEEEEEECTTTCE
T ss_pred CCchhHHHHHHHHHHHhCCCEEEEEEEcC-CccccCCc-HHHHHhcCCCEEEEEEeEccEEEEEECCCCEEEEeCCCeEE
Confidence 99999999999999999999999999964 55422133 67888899999999999999999999987789999999999
Q ss_pred EEEecccchhcccccccCCCCCCCCccEEEEEEcCCceEEEeecCcccEEEEcCCC--CCCCcccccCCCCCCCCCCHHH
Q 015345 82 IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVDE 159 (408)
Q Consensus 82 l~i~~~~~~~y~~~~~~~~~~~p~kh~~l~l~~~dg~~L~f~D~RrfG~i~l~~~~--~~~~~l~~LGPDpL~~~f~~e~ 159 (408)
|++... +.++++|+||+|+|+||. |.|+|+|+||.|++++.. +.++.+.+||||||+++|+.++
T Consensus 79 ~~~~~~-------------~~~~~kh~~v~l~~~~g~-l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~~ 144 (271)
T 2xzf_A 79 YRLATL-------------DAPREKHDHLTMKFADGQ-LIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKL 144 (271)
T ss_dssp EEEECT-------------TCCCCTTEEEEEECSSCE-EEEECTTCCCEEEEEEGGGHHHHHHHTTCCCCSSTTTCCHHH
T ss_pred EEEecC-------------CCCCCCceEEEEEEcCCe-EEEEecCcCCEEEEEcCcchhhhhHHhcCCCCCCCCcCCHHH
Confidence 998532 234578999999999998 999999999999998643 3446789999999999999999
Q ss_pred HHHHHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC------
Q 015345 160 FTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADS------ 233 (408)
Q Consensus 160 f~~~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s------ 233 (408)
|.++|++++++||++||||++||||||||+|||||+|||||.+++++||++++.+|+++|+.||+.||+.||++
T Consensus 145 ~~~~l~~~~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~~~~~ 224 (271)
T 2xzf_A 145 FREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYSA 224 (271)
T ss_dssp HHHHHHTCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCC-----C
T ss_pred HHHHHhcCCccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ----CCCCCceEEEccCCCCCCCCCCCCceEEEEECCceeEEcCCCCCC
Q 015345 234 ----SQFPSNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 234 ----~~f~~~~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
+.|+..|.||+|+|+||+ +||++|.++++|||+|||||.||+.
T Consensus 225 ~g~~G~f~~~~~VygR~G~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~~ 271 (271)
T 2xzf_A 225 LGSTGKMQNELQVYGKTGEKCS--RCGAEIQKIKVAGRGTHFCPVCQQK 271 (271)
T ss_dssp TTTTCCGGGGCSSTTCTTSBCT--TTCCBCEEEEETTEEEEECTTTSCC
T ss_pred CCCCCcccceEEEccCCCCCCC--CCCCEeeEEEECCCceEECCCCCCC
Confidence 357788999999999999 9999999999999999999999973
No 5
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=1.6e-75 Score=568.10 Aligned_cols=249 Identities=31% Similarity=0.503 Sum_probs=229.5
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEEEeccCCceeccCChhhHHHhhcCCeEeeeeeeeeEEEEEeCCCCcceeeeceeee
Q 015345 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (408)
Q Consensus 2 PELPEVe~~~~~L~~~l~Gk~I~~V~v~~~~~v~~~~~~~~f~~~L~G~~I~~V~RrGK~L~~~l~~~~~L~vHLGMtG~ 81 (408)
|||||||++++.|++.++|++|++|++.. +.+++.+ +.|.|++|++|.||||||||+|+++.+|++||||+|+
T Consensus 1 PELPEvetv~r~L~~~~~G~~I~~v~v~~-~~~l~~~------~~L~G~~i~~v~rrGK~L~~~l~~g~~L~~HLgM~G~ 73 (266)
T 1ee8_A 1 PELPEVETTRRRLRPLVLGQTLRQVVHRD-PARYRNT------ALAEGRRILEVDRRGKFLLFALEGGVELVAHLGMTGG 73 (266)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECSC-TTTEESG------GGGTTEEEEEEEEETTEEEEEETTTEEEEEECTTTCE
T ss_pred CCchHHHHHHHHHHHHhCCCEEEEEEEeC-CccccCh------hhcCCcEEEeeeeEeeEEEEEeCCCCEEEEECCCeEE
Confidence 99999999999999999999999999964 5533321 5699999999999999999999987789999999999
Q ss_pred EEEecccchhcccccccCCCCCCCCccEEEEEEcCCceEEEeecCcccEEEEcCCC--CCCCcccccCCCCCCCCCCHHH
Q 015345 82 IYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVDE 159 (408)
Q Consensus 82 l~i~~~~~~~y~~~~~~~~~~~p~kh~~l~l~~~dg~~L~f~D~RrfG~i~l~~~~--~~~~~l~~LGPDpL~~~f~~e~ 159 (408)
|++.. ++|.|++|+|+ |..|.|+|+|+||.|++++.. +.++.+.+||||||+++|+.++
T Consensus 74 ~~~~~------------------~kh~~v~l~~~-g~~l~f~D~R~fG~~~l~~~~~~~~~~~l~~LGpdpL~~~f~~~~ 134 (266)
T 1ee8_A 74 FRLEP------------------TPHTRAALVLE-GRTLYFHDPRRFGRLFGVRRGDYREIPLLLRLGPEPLSEAFAFPG 134 (266)
T ss_dssp EESSC------------------CTTEEEEEEES-SCEEEEECTTCCCEEEEEETTCCTTCTHHHHCCCCTTSTTCCHHH
T ss_pred EEEec------------------CCceEEEEEEc-CcEEEEEecCcCCEEEEEcCchhhhhhHHhcCCCCCCCCcCCHHH
Confidence 98731 47999999999 888999999999999997643 4667899999999999999999
Q ss_pred HHHHHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC------
Q 015345 160 FTDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADS------ 233 (408)
Q Consensus 160 f~~~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s------ 233 (408)
|.++|++++++||++||||++||||||||+|||||+|||||.+++++||++++.+|+++|+.||+.||+.||++
T Consensus 135 ~~~~l~~~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~d~~~ 214 (266)
T 1ee8_A 135 FFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALREVLAEAVELGGSTLSDQSY 214 (266)
T ss_dssp HHHHHHTCCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred HHHHHhcCCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred -------CCCCCceEEEccCCCCCCCCCCCCceEEEEECCceeEEcCCCCCC
Q 015345 234 -------SQFPSNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 234 -------~~f~~~~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
+.|+..|.||+|+|+||+ +||++|.++++|||+|||||.||+.
T Consensus 215 ~~~~g~~G~f~~~~~VygR~g~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~~ 264 (266)
T 1ee8_A 215 RQPDGLPGGFQTRHAVYGREGLPCP--ACGRPVERRVVAGRGTHFCPTCQGE 264 (266)
T ss_dssp CCTTSCCCSCGGGCSSTTCTTSBCT--TTCCBCEEEESSSCEEEECTTTTTC
T ss_pred ccCCCCCCcccceEEEcccCCCCCC--CCCCEeeEEEECCCceEECCCCCCC
Confidence 246789999999999999 9999999999999999999999984
No 6
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=100.00 E-value=1e-73 Score=554.25 Aligned_cols=251 Identities=20% Similarity=0.290 Sum_probs=222.4
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEEEeccCCceeccCChhhHHHhhcCCeEeeeeeeeeEEEEEeCCCCcceeeeceeee
Q 015345 2 PELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDSPPFPSFQFGMTGA 81 (408)
Q Consensus 2 PELPEVe~~~~~L~~~l~Gk~I~~V~v~~~~~v~~~~~~~~f~~~L~G~~I~~V~RrGK~L~~~l~~~~~L~vHLGMtG~ 81 (408)
|||||||++++.|++.++|++|+.|++.. +. ..+|.+.|.|++|++|.||||||||+|+++.+|++||||+|+
T Consensus 1 PElPEVe~~~r~L~~~~~G~~I~~v~~~~-~~------~~~~~~~L~G~~i~~v~rrGK~L~~~l~~g~~l~~HLgM~G~ 73 (262)
T 1k3x_A 1 PEGPEIRRAADNLEAAIKGKPLTDVWFAF-PQ------LKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGV 73 (262)
T ss_dssp CCHHHHHHHHHHHHHHHBTCCCSEEEESS-GG------GTTHHHHHTTCCEEEEEEETTEEEEEETTSCEEEEECTTTCE
T ss_pred CCcHHHHHHHHHHHHHhCCCEEEEEEECC-cc------hHHHHHhcCCcEEEEEEEEeeEEEEEeCCCCEEEEECCcceE
Confidence 99999999999999999999999999853 32 236888899999999999999999999988889999999999
Q ss_pred EEEecccchhcccccccCCCCCCCC-ccEEEEEEcCCceEEEeecCcccEEEEcCCC--CCCCcccccCCCCCCCCCCHH
Q 015345 82 IYIKGVAVTQYKRSAVKDTDEWPSK-YSKFFVELDDGLELSFTDKRRFAKVRLLNDP--TSVPPISELGPDALLEPMTVD 158 (408)
Q Consensus 82 l~i~~~~~~~y~~~~~~~~~~~p~k-h~~l~l~~~dg~~L~f~D~RrfG~i~l~~~~--~~~~~l~~LGPDpL~~~f~~e 158 (408)
|++... .+.|+++ |.||+|.|+||..|.|+|+| || +++.. +.++.+.+||||||+++|+.+
T Consensus 74 ~~~~~~------------~~~~~~~~~~~~~l~~~~g~~l~~~d~r-~~---l~~~~~~~~~~~l~~lGpdpL~~~f~~~ 137 (262)
T 1k3x_A 74 WRVVDT------------GEEPQTTRVLRVKLQTADKTILLYSASD-IE---MLRPEQLTTHPFLQRVGPDVLDPNLTPE 137 (262)
T ss_dssp EEEEET------------TCCCCCSSCEEEEEECSSEEEEEESCCE-EE---EECTTHHHHSHHHHHCCCBTTCTTCCHH
T ss_pred EEEecC------------CCCCCCCCeEEEEEEeCCCeEEEEECCE-EE---EEeCcccccchHHhcCCCCCCCCcCCHH
Confidence 998531 1223344 78999999999999999997 76 43332 235678999999999999999
Q ss_pred HHHHHHcCC---CchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC--
Q 015345 159 EFTDSLSKK---KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADS-- 233 (408)
Q Consensus 159 ~f~~~l~k~---k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s-- 233 (408)
+|.++|+++ +++||++||||++||||||||+|||||+|||||.+++++||++++.+|+++|+.||+.||+.||++
T Consensus 138 ~~~~~l~~~~~~~~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vl~~ai~~gGtt~~ 217 (262)
T 1k3x_A 138 VVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE 217 (262)
T ss_dssp HHHHHHHSTTTTTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhcCCcccccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999887 599999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ---CCCCCceEEEccCCCCCCCCCCCCceEEEEECCceeEEcCCCCC
Q 015345 234 ---SQFPSNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQK 277 (408)
Q Consensus 234 ---~~f~~~~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~ 277 (408)
+.|+..|.||+|+|+||+ +||++|.++++|||+|||||.||+
T Consensus 218 ~~~~~~~~~l~VygR~g~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 218 NKHHGALFRFKVFHRDGEPCE--RCGSIIEKTTLSSRPFYWCPGCQH 262 (262)
T ss_dssp -----CCCCCSSTTCTTSBCT--TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCcceeEEEcCCCcCCCC--CCCCEeEEEEECCCCeEECCCCCC
Confidence 346677889999999999 999999999999999999999996
No 7
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=100.00 E-value=2.8e-72 Score=552.43 Aligned_cols=250 Identities=29% Similarity=0.424 Sum_probs=225.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEEEeccCCceec-cC-ChhhHHHhhcCCeEeeeeeeeeEEEEEeC-C-----CCcc
Q 015345 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVID-GV-SASDFEASVLGKAILSAHRKGKNLWLRLD-S-----PPFP 72 (408)
Q Consensus 1 MPELPEVe~~~~~L~~~l~Gk~I~~V~v~~~~~v~~-~~-~~~~f~~~L~G~~I~~V~RrGK~L~~~l~-~-----~~~L 72 (408)
||||||||++++.|++.++|++|+.|++.. +++++ .+ ++.+|.+.| |++|++|.||||||||.|+ + +.+|
T Consensus 1 MPElPEVe~~~r~L~~~l~G~~I~~v~v~~-~~~l~~~~~~~~~f~~~L-G~~i~~v~rrGK~L~~~l~~~~~~~~~~~L 78 (295)
T 3vk8_A 1 MPQGPEVALTADILEKYFKGKTLEYIDFIS-GRYSKSEPEGYDDFIANL-PLKVSNVDTKGKFLWFELFDPNDKSNKWYI 78 (295)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCEEEEEEECS-SHHHHSCCBTHHHHHTTC-SEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCEEEEEEEcC-CCceecCCCCHHHHHHhc-CCEEEEEEEeeeEEEEEecCCCcCCCCCEE
Confidence 999999999999999999999999999974 66555 33 478999999 9999999999999999995 4 5689
Q ss_pred eeeeceeeeEEEecccchhcccccccCCCCCCCCccEEEEEEcCCceEEEeecCcccEEEEcCC-CCCCCcccccCCCCC
Q 015345 73 SFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLELSFTDKRRFAKVRLLND-PTSVPPISELGPDAL 151 (408)
Q Consensus 73 ~vHLGMtG~l~i~~~~~~~y~~~~~~~~~~~p~kh~~l~l~~~dg~~L~f~D~RrfG~i~l~~~-~~~~~~l~~LGPDpL 151 (408)
++||||+|+|++.. ++|.||+|.|+|+..|.|+|+|+||.|+|+++ .+..+.+..||||||
T Consensus 79 ~~HLgM~G~~~~~~------------------~~h~~v~l~l~~g~~l~f~D~R~fG~~~l~~~~~~~~~~l~~LGPDpL 140 (295)
T 3vk8_A 79 WNTFGLTGMWSLFE------------------AKYTRAVLSFDNELMAYFSDMRNFGTFKFSNSEKELKRKLNELGPDFL 140 (295)
T ss_dssp EEECTTTEEEESSC------------------CTTEEEEEEEGGGCEEEEEETTCCCEEEEESCHHHHHHHHTTSCCBTT
T ss_pred EEecCceEEEEEcC------------------CCeeEEEEEECCCCEEEEEecCcCCEEEEeCCchhhchhhhhcCCCCC
Confidence 99999999999731 47999999999999999999999999999972 234567899999999
Q ss_pred -CCCCCHHHHHHHHcCCCchhHHHHhCCCc-cccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 015345 152 -LEPMTVDEFTDSLSKKKITIKALLLDQSY-ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEV 229 (408)
Q Consensus 152 -~~~f~~e~f~~~l~k~k~~IK~lLLDQ~i-iAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~VL~~Ai~~ 229 (408)
+++|+.++ |++++++||++||||++ ||||||||+|||||+|||||.+++++||++++.+|+++|++||+.||+.
T Consensus 141 ~~~~f~~~~----l~~~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~ 216 (295)
T 3vk8_A 141 KNDDIDISK----IKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKLAYDS 216 (295)
T ss_dssp TCSCCCGGG----GGGCCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHH----HhccCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999887 77899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCC---------CCC--------------CCceEEEccCCCCCCCCCCCCceEEEEE-----CCceeEEcCCCCCCC
Q 015345 230 GADS---------SQF--------------PSNWIFHSREKKPGKAFVDGKKIDFITA-----GGRTTAYVPELQKLN 279 (408)
Q Consensus 230 gg~s---------~~f--------------~~~~~vy~R~g~pC~~~~CG~~I~~~~v-----gGRtT~~CP~CQ~~~ 279 (408)
||.. +.| +..+.||+|.|+|| |++|.++.+ +||+|||||.||+..
T Consensus 217 gg~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~VYgR~g~PC-----G~~I~~~~~~~~~~~~R~t~~CP~CQ~~~ 289 (295)
T 3vk8_A 217 NHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKDPN-----GNKVIADKIIGSGKNKRTTYWAPAIQKLE 289 (295)
T ss_dssp SCSSTTGGGHHHHTTSCCCCCSTTCCCSSSSCCCSSTTCSBCTT-----SCBCEEEECSCCTTCCCEEEECTTTCBCC
T ss_pred CCCcceecCCCCcccccccccccccccccccceEEEeCCCCCCC-----CCcEEEEEecCCCCCCCccEECCCCCCCc
Confidence 9822 456 78889999988775 999999999 999999999999974
No 8
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=1.9e-61 Score=485.93 Aligned_cols=243 Identities=26% Similarity=0.328 Sum_probs=203.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEEEeccCCceeccCChhhHHHhhcCCeEeeeeeeeeEEEEEeCC--C-------Cc
Q 015345 1 MPELPEVEAARRAIEEHCIGKKIVKSIIADDNKVIDGVSASDFEASVLGKAILSAHRKGKNLWLRLDS--P-------PF 71 (408)
Q Consensus 1 MPELPEVe~~~~~L~~~l~Gk~I~~V~v~~~~~v~~~~~~~~f~~~L~G~~I~~V~RrGK~L~~~l~~--~-------~~ 71 (408)
||||||||++++.|+++++|++|..+... +.+++.+.+ +|. +.|++|.. .||||||||+|++ + .+
T Consensus 1 MPELPEVEtvrr~L~~~l~G~~I~~~v~~--~~vlr~p~~-~f~--~~G~~I~~-~RRGKyLll~l~~~~g~~~~~~~~~ 74 (364)
T 1tdh_A 1 MPEGPELHLASQFVNEACRALVFGGCVEK--SSVSRNPEV-PFE--SSAYRISA-SARGKELRLILSPLPGAQPQQEPLA 74 (364)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCCEEEECEE--CSSCCSCCC-CCE--EEEEEEEE-EEETTEEEEEEEECTTCSSCCCCEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCEEEEEECc--ccccccCCc-chh--cCCCEEEE-EEEeeEEEEEccCccccccccCCce
Confidence 99999999999999999999999996442 334333332 463 48999966 8999999999985 2 47
Q ss_pred ceeeeceeeeEEEecccchhcccccccCCCCCCCCccEEEEEEcCC---ceEEEeecCcccEEEEcCCCCCCCcccccCC
Q 015345 72 PSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDG---LELSFTDKRRFAKVRLLNDPTSVPPISELGP 148 (408)
Q Consensus 72 L~vHLGMtG~l~i~~~~~~~y~~~~~~~~~~~p~kh~~l~l~~~dg---~~L~f~D~RrfG~i~l~~~~~~~~~l~~LGP 148 (408)
|++||||+|+|++... .++++|+||+|+|+|+ ..|+|+|+|+||.+.+.+. .+..|||
T Consensus 75 Lv~HLGMsG~l~v~~~--------------~~~~kh~hv~l~l~dgg~~~~L~f~D~RrFG~~~~~~~-----~~~~LGP 135 (364)
T 1tdh_A 75 LVFRFGMSGSFQLVPR--------------EELPRHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGGK-----WQPGRGP 135 (364)
T ss_dssp EEEECTTTCEEEEEEG--------------GGCCTTEEEEEEBCSSSSCEEEEEECTTCCCEEEESSC-----CCTTCCC
T ss_pred EEEeCCceEEEEEecC--------------CCCCCceEEEEEECCCCcEEEEEEecCcEEEEEEecch-----hHhhcCC
Confidence 9999999999998632 1246899999999986 7899999999999988742 4688999
Q ss_pred CCCCC--CCCHHHHHHHHcC--CCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHH--------------
Q 015345 149 DALLE--PMTVDEFTDSLSK--KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKE-------------- 210 (408)
Q Consensus 149 DpL~~--~f~~e~f~~~l~k--~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~-------------- 210 (408)
|||++ .|+.+ |...|.+ ++++||++||||++||||||||+|||||+|||||.+++++|+++
T Consensus 136 dPL~~~~~f~~~-~~~~l~~~~~~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~~~~~~~~~~~~~~~ 214 (364)
T 1tdh_A 136 CVLQEYQQFRES-VLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQ 214 (364)
T ss_dssp CTTTCHHHHHHH-HHHTTTSGGGGSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGGGC-----CCSCHHH
T ss_pred CCCCCHHHHHHH-HHHHhhcccccccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHHHhccccccccchhh
Confidence 99983 22222 3344554 48999999999999999999999999999999999999999998
Q ss_pred ------HHHHHHHHHHHHHHHHHHcCCCC--------C--CCCCceEEEccCCCCCCCCCCCCceEEEEECCceeEEcCC
Q 015345 211 ------SCATLLKCIKEVIEKALEVGADS--------S--QFPSNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPE 274 (408)
Q Consensus 211 ------e~~~L~~ai~~VL~~Ai~~gg~s--------~--~f~~~~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~ 274 (408)
++.+|+++|+.||.+||+.||++ + .|+.+|.||+|.|+||+ +|+ +||+.|||..
T Consensus 215 k~~~~~e~~~L~~ai~~VL~~AI~~GGt~~~~~~G~~G~g~fq~~l~VYgR~G~pc~--~~~--------~gRti~f~~~ 284 (364)
T 1tdh_A 215 KIRTKLQNPDLLELCHSVPKEVVQLGGRGYGSESGEEDFAAFRAWLRCYGMPGMSSL--QDR--------HGRTIWFQGD 284 (364)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHHHTTCTTSSCHHHHHHHHHHHCSSTTCTTCEEE--ECT--------TSCEEEESSC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcChhhhhhheeecCcCCCcCc--ccC--------CCCEEEEccC
Confidence 99999999999999999999974 2 47788999999999999 898 6899999999
Q ss_pred CCCCC
Q 015345 275 LQKLN 279 (408)
Q Consensus 275 CQ~~~ 279 (408)
||++.
T Consensus 285 ~~~~~ 289 (364)
T 1tdh_A 285 PGPLA 289 (364)
T ss_dssp CCTTC
T ss_pred CCccC
Confidence 99875
No 9
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=100.00 E-value=1.3e-58 Score=452.12 Aligned_cols=252 Identities=20% Similarity=0.238 Sum_probs=209.9
Q ss_pred ChhHHHHHHHHHHHh-cCCCEEEEEEeccCCc-------------------e-e-ccCChhhHHHhhcCCeEeeeeeeee
Q 015345 3 ELPEVEAARRAIEEH-CIGKKIVKSIIADDNK-------------------V-I-DGVSASDFEASVLGKAILSAHRKGK 60 (408)
Q Consensus 3 ELPEVe~~~~~L~~~-l~Gk~I~~V~v~~~~~-------------------v-~-~~~~~~~f~~~L~G~~I~~V~RrGK 60 (408)
|+|-...-...|+.. ..|+.+++|...--.. . + .+.+..+|.+.|.|++|++|.||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~L~G~~I~~v~RRGK 81 (287)
T 3w0f_A 2 EGPGCTLNGEKIRARVLPGQAVTGVRGTALQSLLGPAMSPAASLADVATSAAPMNAKDSGWKLLRLFNGYVYSGVETLGK 81 (287)
T ss_dssp CHHHHHHHHHHHHHHSCTTCBEEEEECGGGGGCC-----------------------CCSCGGGGGTTTCBEEEEEEETT
T ss_pred CCCccccchHHHHhhhcCCcEEEeccccccCCCCCCCCCccccccccccccccccCCccHHHHHHHCCCCEEEEEEeeee
Confidence 788888888888754 4899999987532100 0 0 1123458999999999999999999
Q ss_pred EEEEEeCCCCcceeeeceeeeEEEecccchhcccccccCCCCCC-CCccEEEEEEcCCceEEEeecCcccEEEEcCCCC-
Q 015345 61 NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWP-SKYSKFFVELDDGLELSFTDKRRFAKVRLLNDPT- 138 (408)
Q Consensus 61 ~L~~~l~~~~~L~vHLGMtG~l~i~~~~~~~y~~~~~~~~~~~p-~kh~~l~l~~~dg~~L~f~D~RrfG~i~l~~~~~- 138 (408)
||||+|++ .+|++||||+|+|++... ...|+ .+|.|++|.|+|+ .|.|+|+| ++|++..+
T Consensus 82 yLll~l~~-~~Lv~HLGMsG~l~v~~~------------~~~~~~~kh~~v~l~l~dg-~l~f~D~r----~~l~~~~~~ 143 (287)
T 3w0f_A 82 ELFMYFGP-RALRIHFGMKGSILINPR------------EGENRAGASPALAVQLTRD-LICFYDSS----VELRNSVES 143 (287)
T ss_dssp EEEEEETT-EEEEEEEEEEEEEEESCT------------TCCC----CCSEEEEESSC-EEEEEEEE----EEEEEHHHH
T ss_pred EEEEEeCC-CEEEEEcCCcEEEEEeCC------------CCCCCCCCceEEEEEEcCC-eEEEEeCE----EEEEeCccc
Confidence 99999976 589999999999999642 12233 4789999999988 78999985 66654321
Q ss_pred --CCCcccccCCCCCCCCCCHHHHHHHHcC-CCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHH
Q 015345 139 --SVPPISELGPDALLEPMTVDEFTDSLSK-KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATL 215 (408)
Q Consensus 139 --~~~~l~~LGPDpL~~~f~~e~f~~~l~k-~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L 215 (408)
..+.+. |||||+++|+.++|.++|++ ++++||++||||++||||||||+|||||+|||||.+++++||++++.+|
T Consensus 144 ~~~~~~L~--gldPL~~~Fd~~~l~~~L~~~~~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L 221 (287)
T 3w0f_A 144 QQRVRVME--ELDICSPKFSFSRAESEVKKQGDRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHL 221 (287)
T ss_dssp HHHHHHHG--GGCTTCTTCCHHHHHHHHHTTCSSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHH
T ss_pred hhhccccc--CCCCCCCCCCHHHHHHHHhcCCcccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHH
Confidence 122233 88999999999999999988 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCceEEEccCCCCCCCCCCCCceEEEEEC--CceeEEcCCCCCC
Q 015345 216 LKCIKEVIEKALEVGADSSQFPSNWIFHSREKKPGKAFVDGKKIDFITAG--GRTTAYVPELQKL 278 (408)
Q Consensus 216 ~~ai~~VL~~Ai~~gg~s~~f~~~~~vy~R~g~pC~~~~CG~~I~~~~vg--GRtT~~CP~CQ~~ 278 (408)
+++|++||..++...|..+.|+..|.||+|. ||+ +||++|.++.+| ||+|||||.||+-
T Consensus 222 ~~ai~~Vl~~~~~~~g~~g~~~~~l~VYgR~--pC~--~CGt~I~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 222 VKMTRDFSILFYRCCKAGSAISKHCKVYKRP--NCD--QCHSKITVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGGCSSTTCS--BCT--TTCCBCEEECSSTTCCCEEECTTTSCC
T ss_pred HHHHHHHHHHHHhccCCCCcccccEEEECCC--CCC--CCCCEEEEEEecCCCCCEEECCCcccc
Confidence 9999999998988877777899999999995 888 999999999999 9999999999984
No 10
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=96.91 E-value=0.0067 Score=58.95 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=50.8
Q ss_pred cCCCCCCCCCCHHHHHHHHcCCCchhHHHHhCCCccccCchhhhhhH-hhhcccCccCcCCCCCHHHHHHHHHHHHHHHH
Q 015345 146 LGPDALLEPMTVDEFTDSLSKKKITIKALLLDQSYISGIGNWVADEV-LYQAKIHPLQTAVSLSKESCATLLKCIKEVIE 224 (408)
Q Consensus 146 LGPDpL~~~f~~e~f~~~l~k~k~~IK~lLLDQ~iiAGIGNiYadEI-LF~AgIhP~~~~~~Ls~~e~~~L~~ai~~VL~ 224 (408)
-+.||+. ++.+.|.+.+......+...|+. .+.|+|-.||.|+ +++||+ ++.+|+.++..++.
T Consensus 167 ~k~~p~~--~~~e~~~~~l~~~~~~l~~~l~~--~~~G~s~~la~El~~~ra~~------------~~~~l~~~~~~~~~ 230 (288)
T 3doa_A 167 HKINPYD--ITGAEVLKYIDFNAGNIAKQLLN--QFEGFSPLITNEIVSRRQFM------------TSSTLPEAFDEVMA 230 (288)
T ss_dssp CCBCGGG--CCHHHHGGGCCGGGCCHHHHHHH--HBTTCCHHHHHHHHTTSSSC------------STTHHHHHHHHHHH
T ss_pred cCCCccc--CCHHHHHHHHhhCcchHHHHHHH--HcCCCCHHHHHHHHHHHcCC------------cHHHHHHHHHHHHH
Confidence 3678884 77888988876544556666664 7899999999999 999985 26688888888887
Q ss_pred HH
Q 015345 225 KA 226 (408)
Q Consensus 225 ~A 226 (408)
..
T Consensus 231 ~~ 232 (288)
T 3doa_A 231 ET 232 (288)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 11
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=96.72 E-value=0.0019 Score=54.84 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=43.9
Q ss_pred CchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHH
Q 015345 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCI 219 (408)
Q Consensus 168 k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai 219 (408)
+..|.-+| ..|-|||.-+|..||-.++|+|...+.+||++|+.+|...|
T Consensus 11 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 11 HKHAVIAL---TSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp SSCHHHHG---GGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred CCEeHhhH---hhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 45566666 67999999999999999999999999999999999998876
No 12
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=96.31 E-value=0.004 Score=53.71 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=44.9
Q ss_pred CchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHH
Q 015345 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (408)
Q Consensus 168 k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~ 221 (408)
+..|.-+| ..|-|||.-+|..||-.+||||...+.+||++|+..|...|..
T Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 12 NKRVDVAL---TYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN 62 (126)
T ss_dssp SSBHHHHH---TTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT
T ss_pred CcEeeeeh---hccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH
Confidence 45566666 6789999999999999999999999999999999999888763
No 13
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.02 E-value=0.0078 Score=53.49 Aligned_cols=51 Identities=27% Similarity=0.295 Sum_probs=45.4
Q ss_pred CCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 167 KKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 167 ~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
.+..|.-+| ..|-|||.-+|..||-.|+|||...+++||++|+.+|...|.
T Consensus 22 ~~k~v~~AL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~ 72 (152)
T 3iz6_M 22 GKQKIMFAL---TSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVH 72 (152)
T ss_dssp CSSBHHHHH---TTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHH
T ss_pred CCcEeHhhh---hhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHH
Confidence 356777777 569999999999999999999999999999999999887764
No 14
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=96.01 E-value=0.0083 Score=53.48 Aligned_cols=51 Identities=27% Similarity=0.318 Sum_probs=45.2
Q ss_pred CchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHH
Q 015345 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (408)
Q Consensus 168 k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~ 221 (408)
+..|.-+| ..|-|||.-+|..||-.+||||...+++||++|+.+|...|..
T Consensus 25 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 25 KRITPIAL---TGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp SSCHHHHH---TTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHS
T ss_pred CCEEEEee---ecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhC
Confidence 45566666 6799999999999999999999999999999999998887765
No 15
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=95.95 E-value=0.0057 Score=54.02 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=43.6
Q ss_pred CchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 168 k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
+..|.-+| ..|-|||.-+|..||-.|+|||...+++||++|+.+|...|.
T Consensus 25 ~k~v~~AL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~ 74 (146)
T 3u5c_S 25 NIKIVYAL---TTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQ 74 (146)
T ss_dssp SSCTTTTG---GGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHT
T ss_pred CcchHhhH---hhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHH
Confidence 45555566 468899999999999999999999999999999999887764
No 16
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.88 E-value=0.0066 Score=53.75 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=44.7
Q ss_pred CchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHH
Q 015345 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (408)
Q Consensus 168 k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~ 221 (408)
+..|.-+| ..|-|||.-+|..||-.|+|||...+++||++|+.+|...|..
T Consensus 18 ~k~v~~aL---t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 18 NKQLRWAL---TAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILAD 68 (148)
T ss_dssp SSCHHHHH---HHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHC
T ss_pred CCEehhhh---hhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhc
Confidence 45666666 4688999999999999999999999999999999998877753
No 17
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=90.54 E-value=0.069 Score=46.99 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=40.6
Q ss_pred CchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHH
Q 015345 168 KITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKC 218 (408)
Q Consensus 168 k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~a 218 (408)
+..|.-+| ..|-|||.-+|..||-.+|| |...+.+||++|+..|.+.
T Consensus 57 ~K~v~~aL---t~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 57 HKRVEYSL---QYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp SSBTTTGG---GGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS
T ss_pred CCEEEEee---eeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH
Confidence 44555555 67899999999999999999 9999999999999998754
No 18
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=89.03 E-value=1.3 Score=45.73 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=56.7
Q ss_pred CCHHHHHHHHcCC-Cc-hhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHH
Q 015345 155 MTVDEFTDSLSKK-KI-TIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEV 222 (408)
Q Consensus 155 f~~e~f~~~l~k~-k~-~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~V 222 (408)
++.+.+...+... .. .|..+|..+ +.+||.-.|.||+=.+|+.|..+..+|+.+++.+|+++++.+
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~fl~~~--f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (471)
T 1mu5_A 237 VDREEIKILINNLKRDYTIKEFLVNE--FQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY 304 (471)
T ss_dssp CCHHHHHHHSTTCSSCCBHHHHHTTS--SSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhcCCCcchHHhhhcc--ccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhc
Confidence 5677777766544 33 789999755 899999999999999999999999999999999999999874
No 19
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=80.28 E-value=2 Score=40.31 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=41.6
Q ss_pred HHHHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 161 TDSLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 161 ~~~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
...+..++++|+..|-. ++..++|-.+||+|..++.+||.+|+.+|++.+.
T Consensus 199 ~~~F~~rrK~l~n~l~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 199 TEAFNQRRKTIRNSLGN---------LFSVEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp HHHHHTTTSBHHHHTTT---------TCCHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHhh---------hhhHHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 33467789999998841 2237888899999999999999999999998874
No 20
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=73.68 E-value=3.8 Score=38.95 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=46.2
Q ss_pred HHHHH-HHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 158 DEFTD-SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 158 e~f~~-~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
+.|.+ .+..++++|+..|-. .|.+.-+..++|-.+||+|..++.+||.+|+.+|++.+.
T Consensus 209 ~~~v~~~F~~rrKtL~n~L~~----~~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 268 (271)
T 3fut_A 209 FRLVEAAFGKRRKTLLNALAA----AGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 (271)
T ss_dssp HHHHHHHTSSTTSCHHHHHHH----TTCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCcHHHHHHHh----hcCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHH
Confidence 44444 467788899988832 134555678899999999999999999999999998764
No 21
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=72.67 E-value=18 Score=37.78 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=55.7
Q ss_pred CCHHHHHHHHcCC-Cc-hhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHHH
Q 015345 155 MTVDEFTDSLSKK-KI-TIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEV 222 (408)
Q Consensus 155 f~~e~f~~~l~k~-k~-~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~V 222 (408)
++.+.+...+... .. .|..+|. ..+.++|.-.+++++=.+|+.|......|+.+++.+|+.+++.+
T Consensus 236 i~~~~~l~~~~~~~~~~~l~~fl~--~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~ 303 (530)
T 2zbk_B 236 VDREEIKILINNLKRDYTIKEFLV--NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKD 303 (530)
T ss_dssp CCHHHHHHHHTTCSSCCBHHHHHH--TTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhccCCCceeHhhhc--CccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 5677777666544 34 7999997 56789999999999999999999988999999999999999854
No 22
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=71.85 E-value=4.1 Score=39.25 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=48.7
Q ss_pred HHHH-HHcCCCchhHHHHhCCCccccCchhhhhhHhhhc-----ccCc--cCcCCCCCHHHHHHHHHHHHHHH
Q 015345 159 EFTD-SLSKKKITIKALLLDQSYISGIGNWVADEVLYQA-----KIHP--LQTAVSLSKESCATLLKCIKEVI 223 (408)
Q Consensus 159 ~f~~-~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~A-----gIhP--~~~~~~Ls~~e~~~L~~ai~~VL 223 (408)
.|.+ .+..|+++|+..|-.-....|+..-++.++|-.+ +|+| ..++.+||.+|+.+|++.+..-+
T Consensus 217 ~~v~~~F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~~~ 289 (295)
T 3gru_A 217 DFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFL 289 (295)
T ss_dssp HHHHHHHTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHHhh
Confidence 4433 4677889999988653333344455677888888 8999 99999999999999998875443
No 23
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=71.80 E-value=4 Score=38.34 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=38.8
Q ss_pred HHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHH
Q 015345 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCI 219 (408)
Q Consensus 163 ~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai 219 (408)
.+..++++|...|-. ++..|.|-.+||+|..++.+||.+|+.+|++.+
T Consensus 207 ~F~~rrK~l~~~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 207 AFSYRRKTVGNALKK---------LINPSQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HHHSTTSCHHHHTTT---------TCCGGGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHccChHHHHHHhh---------hCCHHHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 466788999988742 223467888999999999999999999998764
No 24
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=69.38 E-value=4.4 Score=38.61 Aligned_cols=49 Identities=6% Similarity=0.085 Sum_probs=39.5
Q ss_pred HHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 163 ~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
.+..++++|...|-. ++..++|-.++|+|..++.+||.+|+.+|++.+.
T Consensus 225 ~F~~rrK~l~n~L~~---------~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 273 (279)
T 3uzu_A 225 AFSQRRKMLRNTLGG---------YRDLVDFDALGFDLARRAEDIGVDEYVRVAQAVA 273 (279)
T ss_dssp HGGGTTSBHHHHTGG---------GTTTCCTTTTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHh---------hcCHHHHHHCCcCCCCCceeCCHHHHHHHHHHHH
Confidence 466788899988742 1225778788999999999999999999998774
No 25
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.48 E-value=4 Score=32.35 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=24.9
Q ss_pred CCCCCCCCCceEEEEECCceeEEcCCCCCCC
Q 015345 249 PGKAFVDGKKIDFITAGGRTTAYVPELQKLN 279 (408)
Q Consensus 249 pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~ 279 (408)
-|| .||.++....-=|=..|||+.|-.|.
T Consensus 33 fCP--eCgq~Le~lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 33 LCP--DCRQPLQVLKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp ECS--SSCSCCCEEEETTEEEECCTTTTCCC
T ss_pred cCc--chhhHHHHHHhcCCcCeeeccCCCEe
Confidence 466 99999998877788899999999885
No 26
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.29 E-value=3.9 Score=29.35 Aligned_cols=28 Identities=11% Similarity=-0.084 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCceEEEEECCceeEEcCCCCC
Q 015345 246 EKKPGKAFVDGKKIDFITAGGRTTAYVPELQK 277 (408)
Q Consensus 246 ~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~ 277 (408)
..+-|| .||+.+...... .-++|+.|.-
T Consensus 18 ~~k~CP--~CG~~~fm~~~~--~R~~C~kCG~ 45 (50)
T 3j20_Y 18 KNKFCP--RCGPGVFMADHG--DRWACGKCGY 45 (50)
T ss_dssp SSEECS--SSCSSCEEEECS--SEEECSSSCC
T ss_pred ecccCC--CCCCceEEecCC--CeEECCCCCC
Confidence 445688 999987766544 5689999964
No 27
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=66.41 E-value=2.4 Score=40.21 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=19.9
Q ss_pred CCCCCCCCCC-ceEEEEECCcee-EEcCCCCCCC
Q 015345 248 KPGKAFVDGK-KIDFITAGGRTT-AYVPELQKLN 279 (408)
Q Consensus 248 ~pC~~~~CG~-~I~~~~vgGRtT-~~CP~CQ~~~ 279 (408)
--|| .||. +|....-+-... ||||.|.-..
T Consensus 35 ~yCP--nCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCP--NCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCT--TTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CcCC--CCCChhhhhccCCCcccccccCCcchhh
Confidence 3577 8999 577666555555 9999999853
No 28
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=51.44 E-value=9.2 Score=35.10 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 163 ~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
.+..+++.|...| ++|-.+||+|..++.+||.+|+.+|++.+.
T Consensus 198 ~F~~rrk~l~~~~---------------~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~ 240 (244)
T 1qam_A 198 WVNKEYKKIFTKN---------------QFNNSLKHAGIDDLNNISFEQFLSLFNSYK 240 (244)
T ss_dssp HHTTCGGGTCCHH---------------HHHHHHHHHTCSCTTSCCHHHHHHHHHHHH
T ss_pred HHhhccccccchH---------------HHHHHCCCCCCCCceeCCHHHHHHHHHHHH
Confidence 3556777777654 356678999999999999999999998874
No 29
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=49.85 E-value=13 Score=30.55 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=13.7
Q ss_pred CCCCceEEEEECCceeEEcCCCCCC
Q 015345 254 VDGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 254 ~CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
.|+.+++...-=|=..|||-.|-.|
T Consensus 66 dC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 66 DCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp TTCSBCEEEEETTEEEEEETTTTEE
T ss_pred chhhHHHHHHHhcCcchhhccCCce
Confidence 5555555555555555555555444
No 30
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=45.88 E-value=12 Score=34.64 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=36.4
Q ss_pred HHcCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 163 SLSKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 163 ~l~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
.+..++++|...|-. + +|-.++|.|..++.+||.+++.+|++.+.
T Consensus 201 ~F~~rrk~l~~~l~~---------~----~l~~~~i~~~~r~e~l~~~~f~~l~~~~~ 245 (249)
T 3ftd_A 201 IFQNRRKVLRKKIPE---------E----LLKEAGINPDARVEQLSLEDFFKLYRLIE 245 (249)
T ss_dssp HHSSTTSCGGGTSCH---------H----HHHHTTCCTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHhCcChhHHHHHHH---------H----HHHHCCCCCCCChhhCCHHHHHHHHHHHH
Confidence 456778888776632 1 67889999999999999999999998764
No 31
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=45.52 E-value=15 Score=30.06 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=18.1
Q ss_pred CCCCCCCCCCceEEEEECCceeEEcCCCCCC
Q 015345 248 KPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 248 ~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
..|| .|+.++... |+ .|+|..||.-
T Consensus 33 ~~CP--~Cq~eL~~~--g~--~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCP--QCQHVLDQD--NG--HARCRSCGEF 57 (101)
T ss_dssp CBCS--SSCSBEEEE--TT--EEEETTTCCE
T ss_pred ccCc--cCCCcceec--CC--EEECccccch
Confidence 4788 999998863 54 5567777763
No 32
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=45.12 E-value=5.6 Score=36.40 Aligned_cols=30 Identities=7% Similarity=-0.197 Sum_probs=18.8
Q ss_pred CCCCCCCCCceEEEEECCceeEEcCCCCCCCc
Q 015345 249 PGKAFVDGKKIDFITAGGRTTAYVPELQKLNG 280 (408)
Q Consensus 249 pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~~ 280 (408)
+|. .||+.-..-.-.-+..|.||-||+...
T Consensus 136 ~C~--~Cgg~fv~~~~~~~~~f~Cp~C~~psR 165 (192)
T 2avu_E 136 SCN--CCGGNFITHAHQPVGSFACSLCQPPSR 165 (192)
T ss_dssp ECT--TTCCEEEEESSCCSSCCCCTTC-----
T ss_pred cCC--CCCCCeeCccCCCCCCCcCCCCCCccc
Confidence 577 899885544334578999999997643
No 33
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=38.47 E-value=63 Score=31.69 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHc--CCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 153 EPMTVDEFTDSLS--KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 153 ~~f~~e~f~~~l~--k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
+.++.+.+...++ ..++.|+.+|-+- +..-++..+|-.++|. ..+.+.|+.++..+|...|+
T Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~l~~~-----lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ 326 (401)
T 2gqf_A 263 PNHNVEEEINQAKQSSPKQMLKTILVRL-----LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIH 326 (401)
T ss_dssp SSSCHHHHHHHHHHHCTTSBHHHHHTTT-----SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhhcccccHHHHhhhh-----cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHh
Confidence 4577777755554 3578899998653 5577788889889998 57889999999999987765
No 34
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=37.31 E-value=17 Score=32.46 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHc--CCCCC--------CC-CC-ceEEEccCCCCCCCCCCCCceEEEEECCceeEEcCCCCCC
Q 015345 214 TLLKCIKEVIEKALEV--GADSS--------QF-PS-NWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 214 ~L~~ai~~VL~~Ai~~--gg~s~--------~f-~~-~~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
+||.+|+.++..+-+. |.... .. .. .|. | ..|| .|...|... +-.+|+|+.|+..
T Consensus 2 ~~~~~i~~~i~~~~~e~lG~~~~~fv~atI~~Ik~d~~~~-Y----~ACp--~CnKKV~~~---~~g~~~CekC~~~ 68 (172)
T 3u50_C 2 RIYSSIEEIIQQAQASEIGQKKEFYVYGNLVSIQMKNKLY-Y----YRCT--CQGKSVLKY---HGDSFFCESCQQF 68 (172)
T ss_dssp CCBCCHHHHHHHHHTCCTTCEEEEEEEEEEECCCCSSCCE-E----EECT--TSCCCEEEE---TTTEEEETTTTEE
T ss_pred cHHHHHHHHHHHHHHhhCCCCCCEEEEEEEEEEcCCCcEE-e----hhch--hhCCEeeeC---CCCeEECCCCCCC
Confidence 3566778888777763 22111 11 12 232 2 2476 899987632 4568999999984
No 35
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=36.37 E-value=46 Score=26.14 Aligned_cols=65 Identities=17% Similarity=0.384 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCceEEEccCCCCCCCCCCCCceEEEEECCceeEEcC
Q 015345 206 SLSKESCATLLKCIKEVIEKALEVGADS--SQFPSNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVP 273 (408)
Q Consensus 206 ~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s--~~f~~~~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP 273 (408)
.|+..++..+++++..+|.+++..|+.- ..|+ .|.+..|.......|.-|..|.. -+.+...|-|
T Consensus 18 ~lsk~~~~~~v~~~~~~i~~~L~~g~~V~l~gfG-~F~v~~r~~R~grNP~Tge~i~i--pa~~~v~Fkp 84 (93)
T 3rhi_A 18 EISQKEATVVVQTVVESITNTLAAGEKVQLIGFG-TFEVRERAARTGRNPQTGEEMQI--AASKVPAFKA 84 (93)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTE-EEEEEEECCEEEECTTTSCEEEE--CCEEEEEEEE
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCE-EEEEEEEcCeeeeCCCCCCEEEe--cCcccEEEEE
Confidence 5899999999999999999999998764 3343 34455555444444566766542 1334444443
No 36
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=33.28 E-value=61 Score=32.11 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHH--cCCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHH
Q 015345 153 EPMTVDEFTDSL--SKKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (408)
Q Consensus 153 ~~f~~e~f~~~l--~k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~ 221 (408)
++++.+.+...+ ...++.++..|-. .+..=++..+|-.++| |..+...|+.+++.+|.+.|+.
T Consensus 282 p~~~~~~~~~~~~~~~~~~~~~~~l~~-----~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 282 PDIDIASILKGMRRANGRQAVQTALAD-----ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp TTSCHHHHHHHHHHHTCSSBHHHHHTT-----TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHhchhhhHHHHHHH-----HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 346666654433 2357888888753 3566788889999999 9999999999999999988763
No 37
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.14 E-value=30 Score=27.28 Aligned_cols=11 Identities=9% Similarity=-0.034 Sum_probs=7.2
Q ss_pred CCCCCCCCCceEE
Q 015345 249 PGKAFVDGKKIDF 261 (408)
Q Consensus 249 pC~~~~CG~~I~~ 261 (408)
.|| .|+.+|..
T Consensus 4 ~CP--~C~~~l~~ 14 (81)
T 2jrp_A 4 TCP--VCHHALER 14 (81)
T ss_dssp CCS--SSCSCCEE
T ss_pred CCC--CCCCcccc
Confidence 455 77777764
No 38
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=33.05 E-value=13 Score=23.28 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=7.4
Q ss_pred EEcCCCCCC
Q 015345 270 AYVPELQKL 278 (408)
Q Consensus 270 ~~CP~CQ~~ 278 (408)
.-||.||..
T Consensus 7 vqcpvcqq~ 15 (29)
T 3vhs_A 7 VQCPVCQQM 15 (29)
T ss_dssp EECTTTCCE
T ss_pred eeChHHHHh
Confidence 469999985
No 39
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=32.69 E-value=19 Score=31.09 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=39.9
Q ss_pred CCCCCCCCCCceEEEEECCceeEEcCCCCCCCccchhhhhCCCCCcCCCCCCCCCcccCCCCC-CCCCchhhhhhhhccc
Q 015345 248 KPGKAFVDGKKIDFITAGGRTTAYVPELQKLNGVQAAKAVGKPRKQAPKGEDSKDDDKYNSGD-ESESDGEEIAENVKSK 326 (408)
Q Consensus 248 ~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~~ 326 (408)
-+|| .|+..-. +.-...|.||.|--.-...+..+ +. ......+-.||. +.|.|..-..+--|.|
T Consensus 28 P~CP--~C~seyt---YeDg~l~vCPeC~hEW~~~~~~~-~~---------~~~~vvkDanGn~L~dGDsVtvIKDLKVK 92 (138)
T 2akl_A 28 PPCP--QCNSEYT---YEDGALLVCPECAHEWSPNEAAT-AS---------DDGKVIKDSVGNVLQDGDTITVIKDLKVK 92 (138)
T ss_dssp CCCT--TTCCCCC---EECSSSEEETTTTEEECTTTTTC-CC---------CSCCSCBCTTSCBCCTTCEEECCSCEECS
T ss_pred CCCC--CCCCcce---EecCCeEECCccccccCCccccc-cc---------ccCceEEcCCCCCccCCCeEEEEeecccc
Confidence 4666 9998754 44577899999998532111100 00 011123445555 7888888777777777
Q ss_pred ccc
Q 015345 327 KRQ 329 (408)
Q Consensus 327 ~~~ 329 (408)
++-
T Consensus 93 Gss 95 (138)
T 2akl_A 93 GSS 95 (138)
T ss_dssp SSS
T ss_pred Ccc
Confidence 653
No 40
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=32.22 E-value=22 Score=30.94 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=20.6
Q ss_pred CCCCCCCCCceEEEEECC--ceeEEcCCCCC
Q 015345 249 PGKAFVDGKKIDFITAGG--RTTAYVPELQK 277 (408)
Q Consensus 249 pC~~~~CG~~I~~~~vgG--RtT~~CP~CQ~ 277 (408)
-|+ .||+++......| +.-++|+.|..
T Consensus 5 ~C~--~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 5 FCS--QCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp BCT--TTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cCc--hhCCccccccccCCCCcceECCCCCC
Confidence 476 9999988665555 44789999983
No 41
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=31.43 E-value=25 Score=31.18 Aligned_cols=25 Identities=8% Similarity=-0.203 Sum_probs=18.6
Q ss_pred CCCCCC--CCCceEEEEECCceeEEcCCCCCC
Q 015345 249 PGKAFV--DGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 249 pC~~~~--CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
.|| . |+..+... +-..|+|+.|+..
T Consensus 45 aC~--~~~CnKKv~~~---~~g~~~CekC~~~ 71 (181)
T 1l1o_C 45 ACP--TQDCNKKVIDQ---QNGLYRCEKCDTE 71 (181)
T ss_dssp BCC--STTCCCBCEEE---TTTEEEETTTTEE
T ss_pred CCC--chhcCCccccC---CCCeEECCCCCCc
Confidence 477 6 99987732 3357999999874
No 42
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=30.41 E-value=30 Score=25.10 Aligned_cols=29 Identities=3% Similarity=-0.173 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCceEEEEECCceeEEcCCCCCC
Q 015345 246 EKKPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 246 ~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
...-|| .||..+..... ...|+|+.|--.
T Consensus 17 ~~~fCP--kCG~~~~ma~~--~dr~~C~kCgyt 45 (55)
T 2k4x_A 17 KHRFCP--RCGPGVFLAEH--ADRYSCGRCGYT 45 (55)
T ss_dssp SSCCCT--TTTTTCCCEEC--SSEEECTTTCCC
T ss_pred ccccCc--CCCCceeEecc--CCEEECCCCCCE
Confidence 346788 99986643333 358999999664
No 43
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=29.32 E-value=85 Score=24.27 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCceEEEccCCCCCCCCCCCCceE
Q 015345 205 VSLSKESCATLLKCIKEVIEKALEVGADS--SQFPSNWIFHSREKKPGKAFVDGKKID 260 (408)
Q Consensus 205 ~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s--~~f~~~~~vy~R~g~pC~~~~CG~~I~ 260 (408)
..||..++..+++++..+|.+++..|+.- ..|+ .|.+..|....+..|.-|..|.
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG-~F~v~~r~~R~grNP~Tge~i~ 70 (90)
T 2o97_B 14 ADISKAAAGRALDAIIASVTESLKEGDDVALVGFG-TFAVKERAARTGRNPQTGKEIT 70 (90)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTTE-EEEEECCC--------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHCCCeEEECCCE-EEEEEEecCeeeECCCCCCEEE
Confidence 46899999999999999999999998754 2343 3444445444444445565544
No 44
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=25.90 E-value=50 Score=22.84 Aligned_cols=28 Identities=7% Similarity=-0.097 Sum_probs=20.9
Q ss_pred CCCCCCCCCC-ceEEEEECCceeEEcCCCCCCC
Q 015345 248 KPGKAFVDGK-KIDFITAGGRTTAYVPELQKLN 279 (408)
Q Consensus 248 ~pC~~~~CG~-~I~~~~vgGRtT~~CP~CQ~~~ 279 (408)
..|| .||. .|..- ..+....|+.|.-..
T Consensus 6 ~~CP--~C~~~~l~~d--~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCP--ACESAELIYD--PERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCT--TTSCCCEEEE--TTTTEEEESSSCCBC
T ss_pred EeCc--CCCCcceEEc--CCCCeEECcccCCcc
Confidence 3677 9998 66543 467789999998754
No 45
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=25.38 E-value=91 Score=24.26 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCceEEEccCCCCCCCCCCCCceE
Q 015345 205 VSLSKESCATLLKCIKEVIEKALEVGADS--SQFPSNWIFHSREKKPGKAFVDGKKID 260 (408)
Q Consensus 205 ~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s--~~f~~~~~vy~R~g~pC~~~~CG~~I~ 260 (408)
..||..++..+++++..+|..++..|+.- ..|+ .|.+..|....+..|..|..|.
T Consensus 15 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG-~F~v~~r~~R~grNP~Tge~i~ 71 (94)
T 1owf_B 15 SHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFG-SFSLHYRAPRTGRNPKTGDKVE 71 (94)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTE-EEEEEEECCEEEECTTTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCcE-EEEEEEEcCeeeECCCCCCEEE
Confidence 46899999999999999999999998754 3343 3344445433343446676654
No 46
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.27 E-value=52 Score=25.03 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=21.0
Q ss_pred CCCCCCCCCceEEEEECCceeEEcCCCCCCC
Q 015345 249 PGKAFVDGKKIDFITAGGRTTAYVPELQKLN 279 (408)
Q Consensus 249 pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~ 279 (408)
.|| .|++++... ......+|+.|...+
T Consensus 10 ~CP--~ck~~L~~~--~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 10 VCP--VCKGRLEFQ--RAQAELVCNADRLAF 36 (70)
T ss_dssp BCT--TTCCBEEEE--TTTTEEEETTTTEEE
T ss_pred ECC--CCCCcCEEe--CCCCEEEcCCCCcee
Confidence 577 999998754 356789999999854
No 47
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=23.96 E-value=1.2e+02 Score=23.38 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCceEEEccCCCCCCCCCCCCceE
Q 015345 205 VSLSKESCATLLKCIKEVIEKALEVGADS--SQFPSNWIFHSREKKPGKAFVDGKKID 260 (408)
Q Consensus 205 ~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s--~~f~~~~~vy~R~g~pC~~~~CG~~I~ 260 (408)
..||..++..+++++..+|.+++..|+.- ..|+ .|.+..|....+..|.-|..|.
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG-~F~v~~r~~R~grnP~Tge~i~ 70 (90)
T 1mul_A 14 AELSKTQAKAALESTLAAITESLKEGDAVQLVGFG-TFKVNHRAERTGRNPQTGKEIK 70 (90)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTE-EEEEEEECC-------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCe-EEEEEEecceeeeCCCCCCEEE
Confidence 46899999999999999999999998754 3343 3344445444444345565443
No 48
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.43 E-value=38 Score=25.65 Aligned_cols=28 Identities=4% Similarity=0.077 Sum_probs=21.3
Q ss_pred CCCCCCCCCceEEEEECCceeEEcCCCCCCCc
Q 015345 249 PGKAFVDGKKIDFITAGGRTTAYVPELQKLNG 280 (408)
Q Consensus 249 pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~~ 280 (408)
.|| .|++++... ......+|+.|...+.
T Consensus 10 ~CP--~ck~~L~~~--~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 10 VCP--VTKGRLEYH--QDKQELWSRQAKLAYP 37 (68)
T ss_dssp BCS--SSCCBCEEE--TTTTEEEETTTTEEEE
T ss_pred ECC--CCCCcCeEe--CCCCEEEcCCCCcEec
Confidence 577 999998754 3467789999998643
No 49
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.42 E-value=52 Score=24.90 Aligned_cols=28 Identities=4% Similarity=-0.204 Sum_probs=21.4
Q ss_pred CCCCCCCCCceEEEEECCceeEEcCCCCCCCc
Q 015345 249 PGKAFVDGKKIDFITAGGRTTAYVPELQKLNG 280 (408)
Q Consensus 249 pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~~ 280 (408)
.|| .|++++... ......+|+.|...+.
T Consensus 10 ~CP--~ck~~L~~~--~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 10 VCP--LCKGPLVFD--KSKDELICKGDRLAFP 37 (68)
T ss_dssp BCT--TTCCBCEEE--TTTTEEEETTTTEEEE
T ss_pred ECC--CCCCcCeEe--CCCCEEEcCCCCcEec
Confidence 477 999998754 3467899999998543
No 50
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=23.24 E-value=66 Score=26.74 Aligned_cols=29 Identities=3% Similarity=-0.224 Sum_probs=21.9
Q ss_pred CCCCCCCCCceEEEEE--CCceeEEcCCCCCCC
Q 015345 249 PGKAFVDGKKIDFITA--GGRTTAYVPELQKLN 279 (408)
Q Consensus 249 pC~~~~CG~~I~~~~v--gGRtT~~CP~CQ~~~ 279 (408)
-|| .||..+.-..- .+...|.|+.|.-..
T Consensus 6 FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 6 FCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp BCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred ccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 366 99988774443 567899999998854
No 51
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.70 E-value=48 Score=25.14 Aligned_cols=27 Identities=4% Similarity=-0.086 Sum_probs=20.9
Q ss_pred CCCCCCCCCceEEEEECCceeEEcCCCCCCC
Q 015345 249 PGKAFVDGKKIDFITAGGRTTAYVPELQKLN 279 (408)
Q Consensus 249 pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~ 279 (408)
.|| .|++++... ......+|+.|...+
T Consensus 10 ~CP--~ck~~L~~~--~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 10 ACP--ICKGPLKLS--ADKTELISKGAGLAY 36 (69)
T ss_dssp CCT--TTCCCCEEC--TTSSEEEETTTTEEE
T ss_pred eCC--CCCCcCeEe--CCCCEEEcCCCCcEe
Confidence 577 999998743 356789999999854
No 52
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=22.55 E-value=1.5e+02 Score=23.70 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCceEEEccCCC-CCCCCCCCCceE
Q 015345 205 VSLSKESCATLLKCIKEVIEKALEVGADS--SQFPSNWIFHSREKK-PGKAFVDGKKID 260 (408)
Q Consensus 205 ~~Ls~~e~~~L~~ai~~VL~~Ai~~gg~s--~~f~~~~~vy~R~g~-pC~~~~CG~~I~ 260 (408)
..|+..++..+++++..+|..++..|+.- ..|+ .|.+..|... .+..|.-|..|.
T Consensus 27 ~~lsk~~~~~vl~~~~~~i~~~L~~G~~V~l~gfG-tF~v~~r~aR~~grNP~Tge~i~ 84 (108)
T 2np2_A 27 LKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFG-TFEVRKRKGRLNARNPQTGEYVK 84 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTE-EEEEEEECCBSSCBCTTTCCBCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHCCCeEEecCcE-EEEEEEecCccccCCCCCCcEEE
Confidence 56899999999999999999999998753 3444 3445556555 555556777654
No 53
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=22.28 E-value=41 Score=29.76 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=22.0
Q ss_pred eEEEccCCCCCCCCCCCCceEEEEECCceeEEcCCCCCC
Q 015345 240 WIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 240 ~~vy~R~g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
-.++.+ |. .||.++.. ++ ....||.|...
T Consensus 137 Gvv~a~----~~--~~g~~m~~--~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 137 GVLRAL----CS--NCKTEMVR--EG--DILKCPECGRV 165 (179)
T ss_dssp EEEECB----CT--TTCCBCEE--CS--SSEECSSSCCE
T ss_pred CEEEec----cc--ccCCceEE--CC--CEEECCCCCCE
Confidence 456643 66 89999865 44 89999999885
No 54
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=22.22 E-value=81 Score=29.63 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.6
Q ss_pred hhhHhhhcccCccCcCCCCCHHHHHHHHHHHH
Q 015345 189 ADEVLYQAKIHPLQTAVSLSKESCATLLKCIK 220 (408)
Q Consensus 189 adEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~ 220 (408)
..++|=.++|.| .++.+||.+++.+|+.++.
T Consensus 260 ~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~ 290 (299)
T 2h1r_A 260 CLDVLEHLDMCE-KRSINLDENDFLKLLLEFN 290 (299)
T ss_dssp HHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-CChhhCCHHHHHHHHHHHH
Confidence 367788899987 6999999999999998864
No 55
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.76 E-value=13 Score=34.92 Aligned_cols=35 Identities=9% Similarity=-0.054 Sum_probs=23.7
Q ss_pred EEEccCCCCCCCCCCCCceEEEEE----CCceeEEcCCCCCC
Q 015345 241 IFHSREKKPGKAFVDGKKIDFITA----GGRTTAYVPELQKL 278 (408)
Q Consensus 241 ~vy~R~g~pC~~~~CG~~I~~~~v----gGRtT~~CP~CQ~~ 278 (408)
.|.-+ +..|. .|+..|--..+ .+-..++||+|+++
T Consensus 193 vv~v~-~~~C~--GC~~~lppq~~~~i~~~~~Iv~Cp~CgRI 231 (256)
T 3na7_A 193 IVTIK-KQACG--GCFIRLNDKIYTEVLTSGDMITCPYCGRI 231 (256)
T ss_dssp EEECB-TTBCT--TTCCBCCHHHHHHHHHSSSCEECTTTCCE
T ss_pred EEEee-CCccC--CCCeeeCHHHHHHHHCCCCEEECCCCCee
Confidence 45544 34676 79887753322 36678999999996
No 56
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=21.73 E-value=23 Score=25.48 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=9.1
Q ss_pred eEEcCCCCCCC
Q 015345 269 TAYVPELQKLN 279 (408)
Q Consensus 269 T~~CP~CQ~~~ 279 (408)
+.|||.|+...
T Consensus 11 ~~~C~~C~~~~ 21 (85)
T 1fo5_A 11 SPMCPHCPAAK 21 (85)
T ss_dssp CCCSSCCCTHH
T ss_pred CCCCCchHHHH
Confidence 56999999964
No 57
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=21.66 E-value=44 Score=31.46 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCceEEEEECCceeEEcCCCCCC
Q 015345 247 KKPGKAFVDGKKIDFITAGGRTTAYVPELQKL 278 (408)
Q Consensus 247 g~pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~ 278 (408)
-+-|+ .||++... ..++...+||.|...
T Consensus 107 ~~fC~--~CG~~~~~--~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 107 HKYCG--YCGHEMYP--SKTEWAMLCSHCRER 134 (269)
T ss_dssp TSBCT--TTCCBEEE--CSSSSCEEESSSSCE
T ss_pred CCccc--cCCCcCcc--CCCceeeeCCCCCCE
Confidence 34587 99999765 467888999999884
No 58
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.16 E-value=61 Score=24.46 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=21.2
Q ss_pred CCCCCCCCCceEEEEECCceeEEcCCCCCCCc
Q 015345 249 PGKAFVDGKKIDFITAGGRTTAYVPELQKLNG 280 (408)
Q Consensus 249 pC~~~~CG~~I~~~~vgGRtT~~CP~CQ~~~~ 280 (408)
.|| .|++++... ......+|+.|...+.
T Consensus 12 ~CP--~ck~~L~~~--~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 12 ACP--KDKGPLRYL--ESEQLLVNERLNLAYR 39 (67)
T ss_dssp BCT--TTCCBCEEE--TTTTEEEETTTTEEEE
T ss_pred CCC--CCCCcCeEe--CCCCEEEcCCCCcccc
Confidence 476 999998765 3466789999988543
No 59
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=20.53 E-value=2.1e+02 Score=28.04 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=45.7
Q ss_pred CCCHHHHHHHH----c-CCCchhHHHHhCCCccccCchhhhhhHhhhcccCccCcCCCCCHHHHHHHHHHHHH
Q 015345 154 PMTVDEFTDSL----S-KKKITIKALLLDQSYISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKE 221 (408)
Q Consensus 154 ~f~~e~f~~~l----~-k~k~~IK~lLLDQ~iiAGIGNiYadEILF~AgIhP~~~~~~Ls~~e~~~L~~ai~~ 221 (408)
.++.+.|.+.| . ..+..|+.+|.. + +-.-++.+++-.++|.|..+.+.|+..+...|...+..
T Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~l~~~l~~--~---~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 301 EENSEQLFQRMLKQMKEDPKKGIKNVLKG--Y---VPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp TSCHHHHHHHHHHHHTTSTTSBHHHHTTT--S---SCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHhccc--c---ChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 46777776655 2 246789988732 2 23445677888889999999999999999887776654
Done!