Query 015346
Match_columns 408
No_of_seqs 132 out of 1352
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 7.6E-53 1.7E-57 392.4 29.2 353 43-401 44-417 (449)
2 PTZ00206 amino acid transporte 100.0 1.3E-51 2.9E-56 402.5 31.6 351 44-395 58-426 (467)
3 KOG1303 Amino acid transporter 100.0 9.4E-50 2E-54 378.5 27.5 359 43-404 35-407 (437)
4 PF01490 Aa_trans: Transmembra 100.0 2.6E-50 5.6E-55 391.8 2.3 358 44-405 1-381 (409)
5 PLN03074 auxin influx permease 100.0 3.4E-44 7.4E-49 348.7 28.2 346 43-399 43-404 (473)
6 KOG1305 Amino acid transporter 100.0 6.9E-42 1.5E-46 323.4 21.9 354 43-398 3-375 (411)
7 KOG4303 Vesicular inhibitory a 100.0 3E-41 6.4E-46 296.8 12.7 355 41-404 112-488 (524)
8 COG0814 SdaC Amino acid permea 100.0 4.8E-31 1E-35 253.2 30.1 356 43-403 6-388 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 4.2E-26 9E-31 217.6 30.9 348 45-402 2-369 (394)
10 TIGR00837 araaP aromatic amino 99.9 1.3E-25 2.8E-30 216.0 26.1 340 52-400 3-361 (381)
11 PRK10483 tryptophan permease; 99.9 7.7E-25 1.7E-29 206.8 29.9 345 43-398 8-373 (414)
12 PRK09664 tryptophan permease T 99.9 2.5E-24 5.5E-29 203.1 30.0 344 44-398 7-374 (415)
13 PRK15132 tyrosine transporter 99.9 2.4E-24 5.3E-29 204.5 28.7 343 47-399 4-363 (403)
14 PRK13629 threonine/serine tran 99.9 9.1E-21 2E-25 179.1 29.8 350 49-404 22-421 (443)
15 TIGR00814 stp serine transport 99.9 1.4E-20 3E-25 179.4 29.2 352 47-403 4-384 (397)
16 PRK10249 phenylalanine transpo 99.8 2E-16 4.3E-21 155.5 31.9 235 41-286 18-267 (458)
17 PRK10655 potE putrescine trans 99.8 5.2E-16 1.1E-20 152.2 33.1 236 42-285 4-246 (438)
18 PRK15049 L-asparagine permease 99.8 4.7E-16 1E-20 154.2 32.1 346 41-398 25-406 (499)
19 PRK10746 putative transport pr 99.8 1.2E-15 2.5E-20 150.1 33.1 349 41-401 7-391 (461)
20 TIGR01773 GABAperm gamma-amino 99.8 1.1E-15 2.4E-20 150.4 31.7 235 39-284 7-257 (452)
21 COG1113 AnsP Gamma-aminobutyra 99.8 9.9E-17 2.1E-21 149.6 22.7 349 39-400 8-391 (462)
22 PRK11049 D-alanine/D-serine/gl 99.8 2.2E-15 4.7E-20 148.7 32.5 233 41-284 17-267 (469)
23 PRK10644 arginine:agmatin anti 99.8 1.7E-15 3.7E-20 148.7 31.6 237 42-287 6-250 (445)
24 PRK10435 cadB lysine/cadaverin 99.8 1E-15 2.3E-20 149.6 29.7 238 42-287 3-246 (435)
25 TIGR00906 2A0303 cationic amin 99.8 1.4E-15 3E-20 152.4 31.1 355 41-399 25-412 (557)
26 TIGR00909 2A0306 amino acid tr 99.8 6.7E-16 1.4E-20 151.1 28.1 354 43-401 2-379 (429)
27 PRK11387 S-methylmethionine tr 99.8 2.7E-15 5.9E-20 148.2 31.6 237 41-288 11-266 (471)
28 PRK11021 putative transporter; 99.8 4.5E-15 9.7E-20 144.2 32.2 228 46-282 1-231 (410)
29 PRK10580 proY putative proline 99.7 1.2E-14 2.6E-19 143.1 34.0 233 40-283 5-254 (457)
30 PRK10238 aromatic amino acid t 99.7 5.9E-15 1.3E-19 145.1 31.7 230 41-281 9-253 (456)
31 TIGR00912 2A0309 spore germina 99.7 2.6E-15 5.7E-20 143.3 27.9 335 45-398 2-354 (359)
32 TIGR03810 arg_ornith_anti argi 99.7 5.8E-15 1.2E-19 145.8 30.9 239 44-288 1-254 (468)
33 TIGR00905 2A0302 transporter, 99.7 6.8E-15 1.5E-19 145.5 30.5 237 43-285 6-255 (473)
34 PRK10836 lysine transporter; P 99.7 2.8E-14 6E-19 141.7 34.0 236 41-287 12-264 (489)
35 KOG1287 Amino acid transporter 99.7 9.2E-16 2E-20 145.4 21.6 350 40-402 8-390 (479)
36 TIGR00908 2A0305 ethanolamine 99.7 2.3E-14 5.1E-19 140.7 28.9 230 41-281 4-244 (442)
37 TIGR00930 2a30 K-Cl cotranspor 99.7 2.9E-14 6.3E-19 149.4 30.5 240 42-282 74-334 (953)
38 TIGR00911 2A0308 L-type amino 99.7 2.1E-14 4.5E-19 143.1 28.3 242 40-287 38-294 (501)
39 TIGR00913 2A0310 amino acid pe 99.7 9E-14 2E-18 137.9 30.1 228 44-282 2-251 (478)
40 PRK10197 gamma-aminobutyrate t 99.7 1.2E-13 2.6E-18 135.5 29.7 330 55-398 3-368 (446)
41 PF13520 AA_permease_2: Amino 99.6 8.8E-14 1.9E-18 136.1 26.4 348 46-403 1-380 (426)
42 PRK11357 frlA putative fructos 99.6 4.6E-13 9.9E-18 131.6 27.2 235 41-284 5-251 (445)
43 COG0531 PotE Amino acid transp 99.5 1.1E-11 2.4E-16 122.7 30.5 246 40-289 8-262 (466)
44 PF03845 Spore_permease: Spore 99.5 1.8E-11 4E-16 114.8 25.6 283 45-340 1-296 (320)
45 TIGR03428 ureacarb_perm permea 99.5 2.2E-10 4.7E-15 113.5 34.4 249 40-288 9-273 (475)
46 TIGR00907 2A0304 amino acid pe 99.5 9E-11 1.9E-15 116.6 30.8 239 41-282 9-271 (482)
47 PRK15238 inner membrane transp 99.5 3.6E-10 7.8E-15 112.6 34.5 239 43-283 6-266 (496)
48 KOG1286 Amino acid transporter 99.5 3.5E-12 7.7E-17 125.7 19.4 355 40-398 26-423 (554)
49 TIGR03813 put_Glu_GABA_T putat 99.4 5.3E-10 1.1E-14 110.8 33.3 239 44-288 1-254 (474)
50 COG0833 LysP Amino acid transp 99.4 1.4E-10 3.1E-15 111.0 26.2 344 41-397 41-427 (541)
51 TIGR00910 2A0307_GadC glutamat 99.3 3.2E-09 7E-14 105.7 31.5 231 43-281 3-247 (507)
52 PF00324 AA_permease: Amino ac 99.2 4.4E-11 9.5E-16 118.7 10.1 231 54-290 5-262 (478)
53 COG3949 Uncharacterized membra 99.1 3.4E-07 7.3E-12 82.6 26.1 225 49-288 6-238 (349)
54 KOG1289 Amino acid transporter 99.0 2.2E-07 4.8E-12 89.3 25.1 252 33-289 37-313 (550)
55 KOG3832 Predicted amino acid t 99.0 7.3E-09 1.6E-13 86.2 12.6 213 46-259 12-303 (319)
56 TIGR00800 ncs1 NCS1 nucleoside 98.8 3.7E-06 7.9E-11 82.6 26.9 338 43-385 11-376 (442)
57 COG1457 CodB Purine-cytosine p 98.8 1.7E-05 3.8E-10 75.8 28.0 254 111-384 85-348 (442)
58 PRK11375 allantoin permease; P 98.6 6.2E-05 1.3E-09 74.5 28.9 277 106-386 88-391 (484)
59 TIGR00813 sss transporter, SSS 98.6 0.00012 2.5E-09 71.3 28.9 148 43-202 2-151 (407)
60 PRK12488 acetate permease; Pro 98.6 0.00057 1.2E-08 68.9 33.5 151 41-203 64-216 (549)
61 COG0591 PutP Na+/proline sympo 98.5 0.00056 1.2E-08 68.0 31.9 149 40-200 34-188 (493)
62 PRK09442 panF sodium/panthothe 98.5 0.0015 3.2E-08 65.1 34.8 152 40-203 37-194 (483)
63 TIGR02119 panF sodium/pantothe 98.5 0.0013 2.8E-08 65.3 34.3 236 39-286 35-293 (471)
64 TIGR02358 thia_cytX probable h 98.4 0.00035 7.6E-09 67.2 27.3 259 107-384 58-320 (386)
65 PF00474 SSF: Sodium:solute sy 98.4 0.00029 6.4E-09 68.5 26.9 148 43-202 5-155 (406)
66 TIGR02711 symport_actP cation/ 98.4 0.0031 6.6E-08 63.7 32.8 150 41-202 64-215 (549)
67 PRK09395 actP acetate permease 98.3 0.0046 1E-07 62.5 32.6 150 40-201 65-216 (551)
68 TIGR03648 Na_symport_lg probab 98.3 0.0061 1.3E-07 61.7 33.3 150 40-201 28-179 (552)
69 TIGR00796 livcs branched-chain 98.2 0.0037 8.1E-08 59.5 27.9 311 53-395 2-347 (378)
70 COG1953 FUI1 Cytosine/uracil/t 98.2 0.0043 9.3E-08 60.0 27.0 293 106-400 102-417 (497)
71 PRK11017 codB cytosine permeas 98.1 0.0041 8.9E-08 60.3 27.5 256 106-384 70-329 (404)
72 TIGR02121 Na_Pro_sym sodium/pr 98.1 0.016 3.4E-07 57.8 34.7 151 41-202 33-191 (487)
73 PRK15419 proline:sodium sympor 98.0 0.019 4.2E-07 57.4 32.7 151 41-202 37-195 (502)
74 TIGR00835 agcS amino acid carr 98.0 0.014 3.1E-07 56.3 27.8 147 44-202 45-200 (425)
75 PF02133 Transp_cyt_pur: Perme 98.0 0.00018 4E-09 70.7 15.5 338 43-387 6-367 (440)
76 PF02554 CstA: Carbon starvati 97.9 0.0028 6E-08 59.0 19.7 170 21-201 27-197 (376)
77 PRK10484 putative transporter; 97.8 0.059 1.3E-06 54.2 31.5 159 40-203 34-197 (523)
78 COG0733 Na+-dependent transpor 97.6 0.047 1E-06 52.3 24.2 235 44-282 7-268 (439)
79 COG1914 MntH Mn2+ and Fe2+ tra 97.4 0.13 2.8E-06 49.6 26.8 278 106-398 76-378 (416)
80 COG1966 CstA Carbon starvation 97.3 0.013 2.9E-07 57.0 15.6 105 46-150 52-157 (575)
81 PF00209 SNF: Sodium:neurotran 97.2 0.16 3.4E-06 51.2 23.2 97 46-149 5-107 (523)
82 KOG1288 Amino acid transporter 97.1 0.009 1.9E-07 59.4 12.9 216 67-284 90-350 (945)
83 PRK15015 carbon starvation pro 97.1 0.0094 2E-07 59.3 12.7 104 46-149 83-187 (701)
84 PF01235 Na_Ala_symp: Sodium:a 97.0 0.34 7.3E-06 46.7 23.6 143 40-195 13-166 (416)
85 PF01566 Nramp: Natural resist 96.6 0.75 1.6E-05 43.9 27.3 82 105-197 40-123 (358)
86 KOG2083 Na+/K+ symporter [Inor 96.1 0.019 4.2E-07 56.3 7.5 225 46-279 30-274 (643)
87 PRK00701 manganese transport p 96.0 1.7 3.7E-05 42.6 28.2 46 106-151 93-138 (439)
88 KOG2082 K+/Cl- cotransporter K 96.0 1.1 2.4E-05 45.6 19.1 108 46-154 115-227 (1075)
89 COG1115 AlsT Na+/alanine sympo 95.5 2.6 5.7E-05 40.6 25.7 317 41-377 58-419 (452)
90 COG4147 DhlC Predicted symport 94.8 4.3 9.4E-05 39.5 25.5 174 102-286 99-294 (529)
91 TIGR00796 livcs branched-chain 94.6 0.4 8.8E-06 45.8 11.0 51 104-154 252-302 (378)
92 KOG3659 Sodium-neurotransmitte 94.3 5.6 0.00012 39.8 17.9 72 46-118 82-159 (629)
93 PF05525 Branch_AA_trans: Bran 94.2 0.33 7.1E-06 47.0 9.5 80 105-195 259-338 (427)
94 PHA02764 hypothetical protein; 94.0 2.8 6E-05 38.6 14.1 91 44-135 12-105 (399)
95 PF02028 BCCT: BCCT family tra 94.0 7.2 0.00016 38.7 27.9 24 43-66 72-95 (485)
96 COG1114 BrnQ Branched-chain am 92.9 1.7 3.6E-05 41.5 11.5 80 105-195 261-340 (431)
97 KOG2466 Uridine permease/thiam 91.4 15 0.00032 36.0 15.9 251 41-300 51-332 (572)
98 KOG1289 Amino acid transporter 90.6 4.1 8.9E-05 40.4 11.6 50 104-153 322-371 (550)
99 PRK09928 choline transport pro 90.2 25 0.00054 36.3 29.0 23 44-66 91-113 (679)
100 KOG2349 Na+:iodide/myo-inosito 89.8 3.8 8.1E-05 41.2 11.0 232 41-285 42-296 (585)
101 PRK15433 branched-chain amino 88.2 4.3 9.3E-05 39.5 9.9 75 109-195 267-341 (439)
102 COG4145 PanF Na+/panthothenate 86.3 31 0.00066 32.8 24.4 236 44-291 39-300 (473)
103 KOG3660 Sodium-neurotransmitte 82.0 66 0.0014 33.2 20.7 55 46-100 38-98 (629)
104 COG1292 BetT Choline-glycine b 79.9 69 0.0015 32.0 20.0 21 46-66 88-108 (537)
105 TIGR01197 nramp NRAMP (natural 76.6 75 0.0016 30.7 32.1 48 105-152 62-109 (390)
106 COG0814 SdaC Amino acid permea 72.3 1E+02 0.0022 30.1 18.8 51 347-397 324-375 (415)
107 PRK09950 putative transporter; 71.4 1.2E+02 0.0025 30.5 31.8 104 102-209 162-271 (506)
108 PF05525 Branch_AA_trans: Bran 69.3 1.2E+02 0.0026 29.7 26.4 72 46-122 3-78 (427)
109 PLN02680 carbon-monoxide oxyge 68.5 85 0.0018 27.8 13.5 98 225-328 46-143 (232)
110 PRK03356 L-carnitine/gamma-but 67.6 1.4E+02 0.003 29.9 29.3 23 44-66 84-106 (504)
111 cd08762 Cyt_b561_CYBASC3 Verte 67.0 78 0.0017 26.8 11.3 108 215-328 24-134 (179)
112 TIGR00842 bcct choline/carniti 66.6 1.4E+02 0.003 29.5 29.5 47 102-148 115-165 (453)
113 PF02439 Adeno_E3_CR2: Adenovi 55.6 27 0.00058 21.0 3.5 33 371-404 5-37 (38)
114 PF11239 DUF3040: Protein of u 52.0 49 0.0011 23.9 5.3 21 8-28 3-23 (82)
115 PRK15433 branched-chain amino 50.9 2.5E+02 0.0055 27.6 25.9 69 47-120 9-81 (439)
116 TIGR03750 conj_TIGR03750 conju 46.6 1.3E+02 0.0029 23.1 7.7 72 38-109 10-83 (111)
117 PF05915 DUF872: Eukaryotic pr 46.0 1.4E+02 0.003 23.2 7.2 65 47-112 40-112 (115)
118 cd08766 Cyt_b561_ACYB-1_like P 42.7 1.8E+02 0.004 23.6 8.0 73 254-328 32-104 (144)
119 PF04835 Pox_A9: A9 protein co 41.9 72 0.0016 20.8 4.1 30 263-292 23-52 (54)
120 PRK13183 psbN photosystem II r 39.2 24 0.00052 22.2 1.6 28 263-290 6-33 (46)
121 PF02468 PsbN: Photosystem II 38.0 31 0.00068 21.4 2.0 26 265-290 5-30 (43)
122 PLN00151 potassium transporter 36.9 5.6E+02 0.012 27.5 14.1 25 230-257 345-369 (852)
123 COG4858 Uncharacterized membra 36.4 1.4E+02 0.003 25.3 6.2 34 71-104 118-152 (226)
124 KOG1277 Endosomal membrane pro 36.0 4.4E+02 0.0095 26.0 11.1 11 54-64 293-303 (593)
125 PRK01766 multidrug efflux prot 35.2 4.4E+02 0.0095 25.7 11.9 29 256-284 309-337 (456)
126 PF12666 PrgI: PrgI family pro 35.0 1.2E+02 0.0025 22.3 5.3 31 40-70 11-41 (93)
127 KOG2174 Leptin receptor gene-r 34.9 84 0.0018 24.6 4.4 39 47-86 65-105 (131)
128 PLN00150 potassium ion transpo 34.7 5.9E+02 0.013 27.1 12.8 25 230-257 285-309 (779)
129 TIGR00907 2A0304 amino acid pe 33.3 4.9E+02 0.011 25.7 14.9 46 107-152 289-335 (482)
130 CHL00020 psbN photosystem II p 32.9 22 0.00047 22.0 0.8 27 264-290 4-30 (43)
131 KOG1619 Cytochrome b [Energy p 31.2 3.8E+02 0.0082 23.8 11.9 109 214-328 42-152 (245)
132 PHA02680 ORF090 IMV phosphoryl 30.0 1.5E+02 0.0033 21.5 4.7 41 248-288 30-70 (91)
133 COG0534 NorM Na+-driven multid 29.4 5.6E+02 0.012 25.2 13.4 29 256-284 311-339 (455)
134 TIGR00905 2A0302 transporter, 29.2 5.7E+02 0.012 25.2 14.1 44 109-152 270-313 (473)
135 PRK09575 vmrA multidrug efflux 27.9 5.8E+02 0.013 25.0 15.3 22 372-393 188-209 (453)
136 cd08765 Cyt_b561_CYBRD1 Verteb 27.6 3.5E+02 0.0076 22.3 10.4 68 259-328 44-111 (153)
137 TIGR00909 2A0306 amino acid tr 27.0 5.8E+02 0.013 24.6 15.7 46 107-152 264-309 (429)
138 COG4709 Predicted membrane pro 26.1 4.2E+02 0.009 22.6 8.8 50 46-99 76-127 (195)
139 COG0534 NorM Na+-driven multid 26.0 6.5E+02 0.014 24.8 14.6 130 255-396 86-218 (455)
140 PLN02810 carbon-monoxide oxyge 25.6 4.8E+02 0.01 23.1 13.5 98 225-328 46-143 (231)
141 PF04133 Vps55: Vacuolar prote 25.4 3.3E+02 0.0072 21.3 7.5 50 48-98 60-111 (120)
142 cd02432 Nodulin-21_like_1 Nodu 23.4 3.2E+02 0.007 23.9 6.7 30 45-74 134-163 (218)
143 PF03169 OPT: OPT oligopeptide 23.4 3.8E+02 0.0083 27.7 8.4 59 60-120 367-428 (624)
144 PF11990 DUF3487: Protein of u 20.6 4.2E+02 0.0092 20.8 7.8 63 37-100 12-77 (121)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-53 Score=392.37 Aligned_cols=353 Identities=23% Similarity=0.353 Sum_probs=314.5
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh-----hCCCCCChHHHHHHh
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE-----SKEGITTYPDIGEAA 116 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~-----~~~~~~~y~~l~~~~ 116 (408)
++..|..++..|+.++++|+|+|++|+||+++|++ |.+...+++.++.|+++.+++|.. +.....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34589999999999999999999999999999999 999999999999999999999873 233456787777665
Q ss_pred c----------cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC
Q 015346 117 F----------GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD 186 (408)
Q Consensus 117 ~----------G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 186 (408)
+ |+++|.+++..+++.++|.|++|+++++++++++++.... .+ .+...++.+.....+++++.|+
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~----~~-~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP----GV-LSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC----CC-ccHHHHHHHHHHHHHHHHHHHh
Confidence 5 7889999999999999999999999999999999983221 11 2345677788888999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhhhheeccccccccCCCCccccccchhhhHHHHhhhcccceehhhHHhhccchhhHH---H
Q 015346 187 LRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---K 263 (408)
Q Consensus 187 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~ 263 (408)
+|.+..+|.++.+..+...++++++...+.++.++.+...++.++...+|+.+|||+|+.++.|++++||+|++++ +
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g 278 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG 278 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence 9999999999999887777777766666655666666667788999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCC--CC
Q 015346 264 ALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--IS 341 (408)
Q Consensus 264 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~ 341 (408)
++..++.+++++|+.+|++||+.||+++++.++.|+|+ ++.....++++++.++++||++++|..+.+++.+.++ +.
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~ 357 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN 357 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence 99999999999999999999999999999999999998 6877788999999999999999999999999876654 33
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCC
Q 015346 342 NNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKAT 401 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~ 401 (408)
++++....+|..++++++++|.++|+++.+++++||++++.+++++|++++++.++++..
T Consensus 358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~ 417 (449)
T KOG1304|consen 358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGK 417 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc
Confidence 467789999999999999999999999999999999999999999999999999998875
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.3e-51 Score=402.53 Aligned_cols=351 Identities=18% Similarity=0.350 Sum_probs=291.9
Q ss_pred CCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccch
Q 015346 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (408)
++.|..++++|++|+++|+|+|++|++++++||+ |++++++.+.++.|+.+++.++++ +.+.++|+|++++++||+++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~-~~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD-KTNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHhCHHHH
Confidence 3468899999999999999999999999999999 999999999999999999999976 57788999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCC-CCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHH
Q 015346 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLD-WPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 201 (408)
+++++.+.+.++|.|++|+++.+|.+..+++..... ........+..+.++.+++++|++++|++++++++|.+++.++
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i 216 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFM 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888653221 1000111233344556678999999999999999999999877
Q ss_pred HHHHhhhheeccccccccC-----------CCCcccc-ccchhhhHHHHhhhcccceehhhHHhhccch--hhHHHHHHH
Q 015346 202 ILIVLCVLFLGTIEGIGFH-----------PTGQVVK-WSGMPFAIGIYGFCYSGHSVFPNIYQSMADK--TKFTKALIT 267 (408)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p--~~~~~~~~~ 267 (408)
++.++.+++.....+.+.. .+...++ ..+.+.++++++|||.||.+++++++||||| +|+.++...
T Consensus 217 ~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~ 296 (467)
T PTZ00206 217 VYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTI 296 (467)
T ss_pred HHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHH
Confidence 7666555544332221110 0001122 2357889999999999999999999999985 488899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhcCC-CCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCC-CCcchh
Q 015346 268 CFALCVLIYGGVAVMGFLMFGQGTLSQITLNM-PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG-ISNNYW 345 (408)
Q Consensus 268 ~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~ 345 (408)
++.+++++|..+|++||+.||++++++++.|+ |.++....++++.+.+.++++||++++|+|+.+++.+..+ ++.+.+
T Consensus 297 s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~ 376 (467)
T PTZ00206 297 AMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFW 376 (467)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchh
Confidence 99999999999999999999999999999999 5567777788888899999999999999999999887433 233445
Q ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHH
Q 015346 346 CFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKI 395 (408)
Q Consensus 346 ~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~ 395 (408)
++...+..+++.++++|+++|+++.+++++||++++.++|++|+++|++.
T Consensus 377 ~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~ 426 (467)
T PTZ00206 377 KHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYS 426 (467)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 56666667777888999999999999999999999999999999999984
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-50 Score=378.53 Aligned_cols=359 Identities=36% Similarity=0.652 Sum_probs=316.1
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC-----hHHHHHHh
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITT-----YPDIGEAA 116 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-----y~~l~~~~ 116 (408)
+++.|++++.++.++.++|.|+|+||+|+++.||+ |++++++.++++.||..+|.+|.+..+...+ |.|+++++
T Consensus 35 ~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a 114 (437)
T KOG1303|consen 35 SRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA 114 (437)
T ss_pred CCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH
Confidence 45689999999999999999999999999999999 8999999999999999999999986655554 99999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHH
Q 015346 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (408)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 196 (408)
||+++++++.+.+.+..+++++.|++..+|+++.+.+....+.. +.+ ...+.++++++.+|++++|+++.++++|..
T Consensus 115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~~ 191 (437)
T KOG1303|consen 115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSLV 191 (437)
T ss_pred hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999887654321 333 466788899999999999999999999999
Q ss_pred HHHHHHHHHhhhheeccccccccCCC-Cccccc--cch-hhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHHHHHH
Q 015346 197 GVVATILIVLCVLFLGTIEGIGFHPT-GQVVKW--SGM-PFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALC 272 (408)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~ 272 (408)
+.+..+....+..+.+...+...+.+ ....+. ... +++++.+.|+|.||..+|+++++||+|++++|++.+++.++
T Consensus 192 ~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~~ 271 (437)
T KOG1303|consen 192 GAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYIIV 271 (437)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHHH
Confidence 99998888877777777666544222 222222 222 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCC----cchhHHH
Q 015346 273 VLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGIS----NNYWCFI 348 (408)
Q Consensus 273 ~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~ 348 (408)
+.+|+.+++.||++|||+.+++++.|+.+..+....+++++.+|++.++.....|..+.+|+....... +....|.
T Consensus 272 ~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~ 351 (437)
T KOG1303|consen 272 TFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRL 351 (437)
T ss_pred HHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceee
Confidence 999999999999999999999999999644578888999999999999999999999999999875533 2455899
Q ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCccc
Q 015346 349 LLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQ 404 (408)
Q Consensus 349 ~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~~~ 404 (408)
+.|..+++.+.++|+.+|.|+++++++|+.....+.+++|+++|++.+|.++..++
T Consensus 352 ~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~ 407 (437)
T KOG1303|consen 352 LVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPK 407 (437)
T ss_pred ehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999998775554444
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.6e-50 Score=391.80 Aligned_cols=358 Identities=30% Similarity=0.548 Sum_probs=310.8
Q ss_pred CCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh---CCCCCChHHHHHHhccc
Q 015346 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES---KEGITTYPDIGEAAFGK 119 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~y~~l~~~~~G~ 119 (408)
+|.|+++++++++|+++|+|+|++|++++++||+ |++++++++.++.|+.+++.++.++ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 4689999999999999999999999999999999 9999999999999999999999874 35889999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
++++++++++.+.++|.+++|++..+|.+.++++....+ ...++.++.++..++++|++++|+++.+++.|.++.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998875432 1234556667788999999999999999999999998
Q ss_pred HHHHHHhhhheecccc---cc-ccCCC--CccccccchhhhHHHHhhhcccceehhhHHhhccchhhHH---HHHHHHHH
Q 015346 200 ATILIVLCVLFLGTIE---GI-GFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---KALITCFA 270 (408)
Q Consensus 200 ~~~~~~~~~~~~~~~~---~~-~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~~~~~~~~ 270 (408)
+.+.......+..... .. +.... ....++.+++.++++++|||.||++++++++|||+|+|++ ++...++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 8765311111111111 11 11111 1234567899999999999999999999999999998766 99999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCC----------CC
Q 015346 271 LCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPA----------GI 340 (408)
Q Consensus 271 ~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----------~~ 340 (408)
+++++|+.+|+.||++||+++++|++.|++++++...++++++.++++.++|++.+|.++.+++.+.+ ++
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 99999999999999999999999999999988888889999999999999999999999999998864 23
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCcccc
Q 015346 341 SNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQV 405 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~~~~ 405 (408)
...+++|...|+.++..++++|+.+|+++.+++++|++++..+.|++|+++|+|.+++++.++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~ 381 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGW 381 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccce
Confidence 44567899999999999999999999999999999999999999999999999999988754443
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3.4e-44 Score=348.66 Aligned_cols=346 Identities=18% Similarity=0.213 Sum_probs=284.1
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh----hCCC-C-------CCh
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE----SKEG-I-------TTY 109 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~----~~~~-~-------~~y 109 (408)
.++.|..++.+++.+..+|.|+|+||++|+++||+ |++.+++.++++.||++++.++.. |++. . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 45689999999999999999999999999999999 999999999999999999887642 2221 1 267
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCch
Q 015346 110 PDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRV 189 (408)
Q Consensus 110 ~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 189 (408)
.|+++..+||+++.+..+..+.++++.|+.|.+..++.+..+... .+ ...+.++..++.+|++++|++++
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~---------~~-~~~~~~i~~~v~~~~~~i~sl~~ 192 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDN---------LD-KRTWTYIFGACCATTVFIPSFHN 192 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCC---------cC-CCeEEeehHHHHHHHHHccCHHH
Confidence 899999999999999999999999999999999888877766321 11 23344567777888999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhheeccccccccC-CCCccccccchhhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHH
Q 015346 190 ISYLSATGVVATILIVLCVLFLGTIEGIGFH-PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITC 268 (408)
Q Consensus 190 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 268 (408)
++++|.+++.+++...+.++......+..+. ....+.++..++.++++++|+|+||..+|+++++||||+|++++...+
T Consensus 193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~ 272 (473)
T PLN03074 193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAA 272 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHH
Confidence 9999999988655433332222221211111 111223344567777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCch--hhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCcchhH
Q 015346 269 FALCVLIYGGVAVMGFLMFGQGTL--SQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWC 346 (408)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg~~~~--~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 346 (408)
...++.+|+.+|+.||+.||+++. ++.+.|+|++. ...++++++.++.+.+|++++.|+.+..|+....+..+....
T Consensus 273 ~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~ 351 (473)
T PLN03074 273 TLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICL 351 (473)
T ss_pred HHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHH
Confidence 999999999999999999999875 45677788664 457889999999999999999999999998876554456677
Q ss_pred HHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCC
Q 015346 347 FILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRK 399 (408)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~ 399 (408)
|...|+.+++.++++|..+|+|+.+++++||++++.+++++|+++|++.++++
T Consensus 352 r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~ 404 (473)
T PLN03074 352 RALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSA 404 (473)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999977654
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-42 Score=323.36 Aligned_cols=354 Identities=23% Similarity=0.376 Sum_probs=300.1
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (408)
+++.|...+++++.|+++|+|++++|++|+..|.+ |++++.+.+.++.++.+.+.+++. ..++++|+++++..+|+.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~-~~~~~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAK-KSGERTYSSLGDLIFGKLG 81 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhh-hcCCCCHHHHHHHHcCCCc
Confidence 45579999999999999999999999999999988 999999999999999999999987 5555699999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC-CCCCc-ccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASL-DWPGF-QLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
+....+....+..| ++.|.+.++|.+..+...... ++.+. +.+++..+.+..+.+++|+++.|++.++++.|.++..
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~ 160 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLA 160 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77777777777777 789999999999866543321 11111 2333333677888999999999999999999999999
Q ss_pred HHHHHHhhhheecccccc----ccCCCCccccccchhhhHHHHhhhcccceehhhHHhhccchh--hHHHHHHHHHHHHH
Q 015346 200 ATILIVLCVLFLGTIEGI----GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT--KFTKALITCFALCV 273 (408)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~--~~~~~~~~~~~~~~ 273 (408)
+.+..++.+.+....... .....+....+.+.+.++++++|+|.||+++.++++|||||+ |+.++...+...+.
T Consensus 161 ~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~ 240 (411)
T KOG1305|consen 161 SVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILAT 240 (411)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHH
Confidence 888777766666544332 111122222236899999999999999999999999999997 69999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhcCCCCchHH------HHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCC----Ccc
Q 015346 274 LIYGGVAVMGFLMFGQGTLSQITLNMPPHAFA------SKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI----SNN 343 (408)
Q Consensus 274 ~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~ 343 (408)
++|..+|.+||++||+++.+|++.++++++.. ....+....++.+.++|+..+|+|..+++.+.+.. ...
T Consensus 241 ~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s 320 (411)
T KOG1305|consen 241 LIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFS 320 (411)
T ss_pred HHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCcc
Confidence 99999999999999999999999999876433 46788899999999999999999999988765543 256
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCC
Q 015346 344 YWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (408)
Q Consensus 344 ~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~ 398 (408)
+.++...+..++....+.|+..|+.+.+++++||+++..++|++|+++|++.+|+
T Consensus 321 ~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 321 GKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK 375 (411)
T ss_pred ceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence 6789999999999999999999999999999999999999999999999998886
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3e-41 Score=296.79 Aligned_cols=355 Identities=23% Similarity=0.378 Sum_probs=304.1
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCC-------CCCChHHHH
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKE-------GITTYPDIG 113 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~-------~~~~y~~l~ 113 (408)
+...|++.+|+..|..|++-|.=+++||+|....||.++..++.++.+++||..++++|..... -..+|-+++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA 191 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIA 191 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHH
Confidence 3346799999999999999999999999999999999999999999999999999999985222 136999999
Q ss_pred HHhcccc-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHH
Q 015346 114 EAAFGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (408)
Q Consensus 114 ~~~~G~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 192 (408)
...++|. |+..+++.+.+-..-.|+.|.+..+|.+++-++..+. +.+ -|.++..+.++|+.+++++|.+.+
T Consensus 192 ~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~sv-------d~~-sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 192 DFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSV-------DKA-SWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred HHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCc-------ccc-chhhhhhHHHhhhHHHHHHHHHHH
Confidence 9988875 6578899999999999999999999999999886543 233 356778899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhheec--cccccccCCCCccccccchhhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHHHH
Q 015346 193 LSATGVVATILIVLCVLFLG--TIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFA 270 (408)
Q Consensus 193 ~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~ 270 (408)
+|.+..++.+.+-++++.++ ...++.++.-....+..+++..+|+++|+|..|..+|.+..+|++|++++.++.++.+
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHI 343 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHI 343 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHH
Confidence 99998888776655444443 3445555444445567788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCC-----------
Q 015346 271 LCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG----------- 339 (408)
Q Consensus 271 ~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----------- 339 (408)
...++-..+|..+|++|++.++..+.+|+|+. ....+.++++.+..+.+||+-++.+++.+|+.+...
T Consensus 344 AAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-sfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys 422 (524)
T KOG4303|consen 344 AAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-SFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYS 422 (524)
T ss_pred HHHHHHHHHHHheeeeechhhHHHHhcCCCcc-chhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeC
Confidence 99999999999999999999999999999965 455567888889999999999999999999876432
Q ss_pred -CCcchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCccc
Q 015346 340 -ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQ 404 (408)
Q Consensus 340 -~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~~~ 404 (408)
+...+-|....|+++++.+.+.|+.+|.|..+++++|++.+++++|++|+++|+++..++...++
T Consensus 423 ~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e 488 (524)
T KOG4303|consen 423 PDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFE 488 (524)
T ss_pred CCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHH
Confidence 22234456668999999999999999999999999999999999999999999999887665544
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-31 Score=253.19 Aligned_cols=356 Identities=19% Similarity=0.202 Sum_probs=273.8
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CChHHHHHHhcccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGI-TTYPDIGEAAFGKY 120 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~y~~l~~~~~G~~ 120 (408)
.++.+..+++.++.+++||+|+|++|++++..|+. ++.++++.+.++.++.+.+.|+..+.+.. .++.+++++.+||+
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~ 85 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKK 85 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcc
Confidence 34579999999999999999999999999999998 99999999999999999999999866666 49999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHH
Q 015346 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 200 (408)
+++++++.+.+.+++.+.+|.+..+|.+++.+++.... +...+....++.+.++.++++.++...++..+.+....
T Consensus 86 ~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~----~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 86 GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL----NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc----CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998863211 10245666777777888899999999999999888776
Q ss_pred HHHHHhhhheeccccccccC-CC-Cc-cccccchhhhHHHHhhhcccceehhhHHhhccchh-h-HHHHHHHHHHHHHHH
Q 015346 201 TILIVLCVLFLGTIEGIGFH-PT-GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K-FTKALITCFALCVLI 275 (408)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~-~~~~~~~~~~~~~~~ 275 (408)
++..++...+.....+...- .. .. ...+.++..++|+++|||.||+++|++.+|||+++ | .+|+..++..+..++
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vl 241 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVL 241 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 66555544444333222111 11 11 35567889999999999999999999999999876 4 999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHH--------------HHhHcCC-C-
Q 015346 276 YGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARS--------------IEELLPA-G- 339 (408)
Q Consensus 276 Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~--------------~~~~~~~-~- 339 (408)
|..+++.+|..+|+.+.+++++++++++..... +.........+++...++.... .++.+.+ +
T Consensus 242 yi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~-~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~ 320 (415)
T COG0814 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSA-LAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNS 320 (415)
T ss_pred HHHHHHHHHHhcCcccHHHHHHccCchHHHHHH-HHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccC
Confidence 999999999999999999999999876543221 2222222234444444444432 2222221 1
Q ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCcc
Q 015346 340 ----ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRT 403 (408)
Q Consensus 340 ----~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~~ 403 (408)
+....+.........+..+...+...|..+.+++.+|+.....+.++.|...++|....|..+.
T Consensus 321 ~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g 388 (415)
T COG0814 321 KPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGG 388 (415)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCC
Confidence 1111223444455555577778888888888999999999999999999998888776655554
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=4.2e-26 Score=217.63 Aligned_cols=348 Identities=18% Similarity=0.215 Sum_probs=262.5
Q ss_pred CCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchh
Q 015346 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (408)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (408)
+.+.+.+++.+.++.||+|+|+||.+.+..|.. +.+.+++.+.++.+++.++.|...+.++..++.+++++.+||+|++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence 468899999999999999999999999999998 9999999999999999999999887888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHH
Q 015346 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 203 (408)
+..+.+.+..++.+.+|....++.+++.++.... ...+ +....++..++...+... +.+.+.+.+..-+...+.
T Consensus 82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----~~~~-~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----TDLS-PWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMII 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----CCCc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875331 1111 222223333333333222 333555555443333333
Q ss_pred HHhhhheeccccccccC----CCCccccccchhhhHHHHhhhcccceehhhHHhhcc-chhhHHHHHHHHHHHHHHHHHH
Q 015346 204 IVLCVLFLGTIEGIGFH----PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGG 278 (408)
Q Consensus 204 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~Y~~ 278 (408)
.+..+..... ...+.+ ..+...++...+.++|+.++||..|..+|++.+.++ |++|.+|++..+..+..++|++
T Consensus 156 ~~~~l~~~~~-p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~ 234 (394)
T PF03222_consen 156 SFIILVVYLI-PHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLL 234 (394)
T ss_pred HHHHHHHHHh-hhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222221 111111 122345677888999999999999999999999998 6679999999999999999997
Q ss_pred HHHHHHHHh-----------cCCch--hhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCcchh
Q 015346 279 VAVMGFLMF-----------GQGTL--SQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYW 345 (408)
Q Consensus 279 ~g~~gy~~f-----------g~~~~--~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 345 (408)
.-+..-..- +++.. ...+.+..++++...+..++..+.+.+||--....+++.+++.+..+ ++..
T Consensus 235 w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~--~~~~ 312 (394)
T PF03222_consen 235 WVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK--NNSS 312 (394)
T ss_pred HHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cccc
Confidence 644433211 11111 12334444556677777888888999999999999999999988653 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-chhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCc
Q 015346 346 CFILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATR 402 (408)
Q Consensus 346 ~~~~~~~~~~~~~~~la~~~p-~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~ 402 (408)
.|.....+...++.++|...| .|...+++.| .....+..++|+++.+|.|++++.+
T Consensus 313 ~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~ 369 (394)
T PF03222_consen 313 GRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQ 369 (394)
T ss_pred chHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCC
Confidence 556666777788999999999 8899999999 8899999999999999998877654
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=1.3e-25 Score=216.00 Aligned_cols=340 Identities=14% Similarity=0.123 Sum_probs=250.5
Q ss_pred HHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhHHHHHHH
Q 015346 52 IFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLY 130 (408)
Q Consensus 52 ~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 130 (408)
+..++++++|+|++++|..+++.|+. +++.+++.++++.++...+.|...+.++..++.+++++.+||++++++.+.++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 34578999999999999999999988 88888999999999999999998878888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhhhe
Q 015346 131 TELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLF 210 (408)
Q Consensus 131 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~ 210 (408)
+.++..+.+|....++.+..+++..... ..+ +....++..+++. ....++.+..++++.+.+...+..++.++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~----~~~-~~~~~~~~~~v~~-~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF----PWS-ARAIVLIFTVLFG-SFVWLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC----Ccc-HHHHHHHHHHHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887642211 111 2233333333333 344557788888888776665544433332
Q ss_pred ecccc-cc-ccCCC-CccccccchhhhHHHHhhhcccceehhhHHhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015346 211 LGTIE-GI-GFHPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (408)
Q Consensus 211 ~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 286 (408)
.+... +. ...+. ....++.++..+++...++|++|..++.+.++++ |+||.+|++.++..+++++|+++.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~ 236 (381)
T TIGR00837 157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGN 236 (381)
T ss_pred HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22211 11 11110 1112455778899999999988889999999997 666999999999999999999887776665
Q ss_pred hcCCchhhhhcCC-------------CCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCcchhHHHHHHHH
Q 015346 287 FGQGTLSQITLNM-------------PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTA 353 (408)
Q Consensus 287 fg~~~~~~il~~~-------------~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (408)
.+.+...+..... -.+.+...+...+..+.+..++.......++...+.+.+++++ .+|.....+
T Consensus 237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~--~~~~~~~~~ 314 (381)
T TIGR00837 237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK--KGRFKTGLL 314 (381)
T ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCchhhhh
Confidence 5433222211111 1122344556666677788888888888889888888765322 235566677
Q ss_pred HHHHHHHHHHHcCc-hhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCC
Q 015346 354 LVFSSVCAAFLLPF-FSLVMALIGSLLSILVAIIMPSLCFIKILGRKA 400 (408)
Q Consensus 354 ~~~~~~~la~~~p~-~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~ 400 (408)
..+++.++|.+.|+ +-..++.+| +++..+.+++|+++++|.||++.
T Consensus 315 ~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~~ 361 (381)
T TIGR00837 315 TFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKFP 361 (381)
T ss_pred hHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 77889999999994 559999999 88999999999999999887643
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=7.7e-25 Score=206.83 Aligned_cols=345 Identities=14% Similarity=0.115 Sum_probs=259.2
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (408)
+++.+...++..+.++.||+|+|+||.+.+..|+. +++++++++.++.||+.++.|...+.++..++..++|+.+||.|
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g 87 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGW 87 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 45589999999999999999999999999999999 99999999999999999999998877888899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHH
Q 015346 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 201 (408)
+.+..+.+.+..++.+.+|+...++.+.+.+++...+ . ++....++++++...+... +.+...+.+.+-+...
T Consensus 88 ~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~-----i-~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 88 NVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLN-----V-PARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCC-----C-cHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753211 1 2334445555555555544 4466666665444433
Q ss_pred HHHHhhhheecccccccc----CCC-CccccccchhhhHHHHhhhcccceehhhHHhhccc-hhhHHHHHHHHHHHHHHH
Q 015346 202 ILIVLCVLFLGTIEGIGF----HPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMAD-KTKFTKALITCFALCVLI 275 (408)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~~~~ 275 (408)
+..++..+... ..+.+. +.. .....+...+.+++++++||..|..+|++.+.+++ ++|.+|++..+..+..++
T Consensus 161 i~~f~~~~~~l-~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~ 239 (414)
T PRK10483 161 VITFFLTFGSL-LGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALAL 239 (414)
T ss_pred HHHHHHHHHHH-HhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 33322222221 111111 111 11122345789999999999999999999999874 679999999999999999
Q ss_pred HHHHHHHHHHHhcCCc----------hhhh---hcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCc
Q 015346 276 YGGVAVMGFLMFGQGT----------LSQI---TLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISN 342 (408)
Q Consensus 276 Y~~~g~~gy~~fg~~~----------~~~i---l~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 342 (408)
|++.-......-+.+. .+.. +.+..++.....+..++..+.+.+||--....+++.+.+.+..+++
T Consensus 240 yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~- 318 (414)
T PRK10483 240 YTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS- 318 (414)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-
Confidence 9986554443322111 1111 1222233455566677777888899999989999999998876542
Q ss_pred chhHHHHHHHHHHHHHHHHHHHcC-chhHHHHHHhHHHHHHHHHHhhHHHHHHHhCC
Q 015346 343 NYWCFILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (408)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~p-~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~ 398 (408)
...|.....+..+++.++|...| .|-..++..|.. ..++.-++|+++.+|.||+
T Consensus 319 -~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 319 -AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred -cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 33455556678889999999999 699999999976 8888889999999999976
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.94 E-value=2.5e-24 Score=203.07 Aligned_cols=344 Identities=13% Similarity=0.112 Sum_probs=252.9
Q ss_pred CCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccch
Q 015346 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (408)
||.+...++..+.+++||+|+|+||.+.++.|+. +.+++++++.++.||+.++.|+..+.++..++..++|+.+||.|+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~ 86 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWN 86 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHH
Confidence 3347888999999999999999999999999999 999999999999999999999988788889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHH
Q 015346 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI 202 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 202 (408)
.+.++...+..++.+.+|+...++.+.+.++... +...+ +....++++++..++... +.+...+.+-+-+...+
T Consensus 87 ~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~~i~-~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~i 160 (415)
T PRK09664 87 IISGITVAFVLYILTYAYISANGAIISETISMNL----GYHAN-PRIVGICTAIFVASVLWI-SSLAASRITSLFLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cCCCc-HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986411 11222 233334555555555544 34666666554433333
Q ss_pred HHHhhhheeccccccc---cCCCCccc----cccchhhhHHHHhhhcccceehhhHHhhcc-chhhHHHHHHHHHHHHHH
Q 015346 203 LIVLCVLFLGTIEGIG---FHPTGQVV----KWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVL 274 (408)
Q Consensus 203 ~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~ 274 (408)
+.++..+... ..+.+ ....+... .+...+.++|++++||..|+++|++.+.++ |++|.+|++..+..+..+
T Consensus 161 i~f~~~~~~l-~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLv 239 (415)
T PRK09664 161 ISFVIVFGSF-FFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALV 239 (415)
T ss_pred HHHHHHHHHH-hhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 2222212111 11111 11111111 123477899999999999999999999997 457899999999999999
Q ss_pred HHHHHHHHHHH-----------HhcCCchhh---hhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCC
Q 015346 275 IYGGVAVMGFL-----------MFGQGTLSQ---ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI 340 (408)
Q Consensus 275 ~Y~~~g~~gy~-----------~fg~~~~~~---il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 340 (408)
+|++.=.+... ..|++.... ...+ .++.+...+..++..+.+.+||--....+.+.+.+.+..++
T Consensus 240 iY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~ 318 (415)
T PRK09664 240 IYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDN 318 (415)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99755332221 111111111 1112 23345556677777788889999888999999999886653
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHcC-chhHHHHHHhHHHHHHHHHHhhHHHHHHHhCC
Q 015346 341 SNNYWCFILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~p-~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~ 398 (408)
+ +..|.....+..+++.+++.+.| .|-..++..|.. ..++.-++|+++.+|.||+
T Consensus 319 ~--~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 319 S--HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred c--cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 2 33455566778889999999999 699999999986 7788889999999999976
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.94 E-value=2.4e-24 Score=204.46 Aligned_cols=343 Identities=16% Similarity=0.187 Sum_probs=249.5
Q ss_pred CHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhHH
Q 015346 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLI 125 (408)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 125 (408)
+...+++.+.++.||+|+|+||.+.+..|+. +++++++++.+..|+++.+.|+..+.++..++.+++|+.+||+|+++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 7788999999999999999999999999988 999999999989999999999877667778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH
Q 015346 126 SVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIV 205 (408)
Q Consensus 126 ~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 205 (408)
.+.+.+..+..+.+|....++.+.+.++.+. +++.+. ....+++.++...+... +.+...+.+.+-+...+...
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~----~~~i~~-~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWT----GISMSP-TAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc----cCCCCh-HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877775421 112222 22223333322222222 33555555543332222222
Q ss_pred hhhheeccccccccCC-CCccccccchhhhHHHHhhhcccceehhhHHhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015346 206 LCVLFLGTIEGIGFHP-TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMG 283 (408)
Q Consensus 206 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~Y~~~g~~g 283 (408)
+..... ...+.+.+. .....+....+.++|++.+||..|+.+|++.+.++ |++|.+|++.++..+..++|++.-...
T Consensus 158 ~~~~~~-l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 158 VVMLAL-MMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHHHHH-HHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 112221111 00011112488999999999999999999999997 457999999999999999999877766
Q ss_pred HHHhcCCch----------hhhhc---CCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCcchhHHHHH
Q 015346 284 FLMFGQGTL----------SQITL---NMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILL 350 (408)
Q Consensus 284 y~~fg~~~~----------~~il~---~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (408)
...-+.+.. ++.++ +..++.+...+..++..+.+.+||--....+.|.+.+.+.+++ +...|...
T Consensus 237 lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~--~~~~r~~~ 314 (403)
T PRK15132 237 LGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN--TVGGRLQT 314 (403)
T ss_pred HhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--cccCCchh
Confidence 655443211 11221 2223445666677777788889999998999999999886543 23336666
Q ss_pred HHHHHHHHHHHHHHcC-chhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCC
Q 015346 351 RTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILGRK 399 (408)
Q Consensus 351 ~~~~~~~~~~la~~~p-~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~ 399 (408)
..+..+.++++|...| .|....++.|. ..+.+.+++|+++.+|.|+++
T Consensus 315 ~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 315 GLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 7788889999999999 88889999886 589999999999999998765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.90 E-value=9.1e-21 Score=179.07 Aligned_cols=350 Identities=13% Similarity=0.127 Sum_probs=249.0
Q ss_pred HHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC-CCCCChHHHHHHhccccchhHHH
Q 015346 49 TQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESK-EGITTYPDIGEAAFGKYGRLLIS 126 (408)
Q Consensus 49 ~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~ 126 (408)
..-+..+.++.+|+|+|+||...+..|.. .++++++.+.+++++++.+.|...+. ++..++.+++++.+||.|+.+..
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHH
Confidence 34459999999999999999999999987 99999999999999999999987655 66789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHh
Q 015346 127 VLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVL 206 (408)
Q Consensus 127 ~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 206 (408)
+++++..+..+.+|...+.+.+++++.+.- +....++....++..+++..+... +-+.+-+++.+-+...+...+
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql----~~~~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~ 176 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQL----GFAPLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLV 176 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CcCCccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888654421 110112444444444444444333 335555554433332222222
Q ss_pred hhheeccccccc---cCCCC-----cccc---ccchhhhHHHHhhhcccceehhhHHhh----cc-----c--hhhHHHH
Q 015346 207 CVLFLGTIEGIG---FHPTG-----QVVK---WSGMPFAIGIYGFCYSGHSVFPNIYQS----MA-----D--KTKFTKA 264 (408)
Q Consensus 207 ~~~~~~~~~~~~---~~~~~-----~~~~---~~~~~~~~~~~~faf~~~~~i~~i~~~----m~-----~--p~~~~~~ 264 (408)
.+.... .+.++ ....+ ...+ ....+.++|++++||..|+.+|+.... .+ | ++|.+|+
T Consensus 177 ~l~~~L-iP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ri 255 (443)
T PRK13629 177 LISLSL-IPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQI 255 (443)
T ss_pred HHHHHH-HHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHH
Confidence 222111 11111 10011 1101 124788999999999999999999888 53 4 5688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCch-----hh------hhcCCCCc--------hHHHHHHHHHHHHhhhhhhhhhh
Q 015346 265 LITCFALCVLIYGGVAVMGFLMFGQGTL-----SQ------ITLNMPPH--------AFASKVAVWTTVINPFTKYALLM 325 (408)
Q Consensus 265 ~~~~~~~~~~~Y~~~g~~gy~~fg~~~~-----~~------il~~~~~~--------~~~~~v~~~~~~~~~~~~~p~~~ 325 (408)
+.++..+..++|+..-+.....-+++.. +| +.+.++++ +....+..++..+.+.++|--..
T Consensus 256 i~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~ 335 (443)
T PRK13629 256 ISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHY 335 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887777665543321 11 11222221 34556666777778889999888
Q ss_pred hhhHHHHHhHcCC----C---CCcchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCC
Q 015346 326 NPLARSIEELLPA----G---ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (408)
Q Consensus 326 ~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~ 398 (408)
..++|.+++++.+ . +.+.+..+......+.+.++.++..=|+.-.+++-.|+-..+++.|++|...-+|...-
T Consensus 336 LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l 415 (443)
T PRK13629 336 LGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSL 415 (443)
T ss_pred HHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHH
Confidence 8999999887731 1 12344556777778888999999999999999998888889999999999999988665
Q ss_pred CCCccc
Q 015346 399 KATRTQ 404 (408)
Q Consensus 399 ~~~~~~ 404 (408)
++.|.+
T Consensus 416 ~~yr~~ 421 (443)
T PRK13629 416 AKYRGR 421 (443)
T ss_pred HHhCCC
Confidence 554443
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.89 E-value=1.4e-20 Score=179.41 Aligned_cols=352 Identities=12% Similarity=0.098 Sum_probs=250.5
Q ss_pred CHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCChHHHHHHhccccchhH
Q 015346 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKE-GITTYPDIGEAAFGKYGRLL 124 (408)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~y~~l~~~~~G~~~~~~ 124 (408)
....-++.+.++++|+|+|.+|...++.||. .++..++...+++++.+.+.|....++ +..++.|++|+.|||+++.+
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 3455688999999999999999999999999 666666667777888888888754344 48899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Q 015346 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 204 (408)
..+.+++..+..+.+|....++.+.+++.+... .....+ +...+..++++......+.+.+.+++.+-+...+..
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~----~~~p~~-~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~ 158 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLG----TAPPLR-GLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLI 158 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCcHH-HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888887754211 111122 222222233323344457788888887666444333
Q ss_pred Hhhhheeccccc--cccCCCCcc-ccccchhhhHHHHhhhcccceehhhHH----hhcc--c--hhhHHHHHHHHHHHHH
Q 015346 205 VLCVLFLGTIEG--IGFHPTGQV-VKWSGMPFAIGIYGFCYSGHSVFPNIY----QSMA--D--KTKFTKALITCFALCV 273 (408)
Q Consensus 205 ~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~faf~~~~~i~~i~----~~m~--~--p~~~~~~~~~~~~~~~ 273 (408)
.+.+........ ......+.. ..+.++..+++..++||.+|+.+++.. ++.+ | ++|.+|+..++..+.+
T Consensus 159 l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 159 LVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 333222222111 111111211 234678999999999999999999997 3344 3 4588999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhh-------hh---cCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcC----C-
Q 015346 274 LIYGGVAVMGFLMFGQGTLSQ-------IT---LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLP----A- 338 (408)
Q Consensus 274 ~~Y~~~g~~gy~~fg~~~~~~-------il---~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----~- 338 (408)
++|+..-+......+++.... .+ .|-.+++....+..++..+.+..||--....+++.+.+++. .
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~ 318 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK 318 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 999988888777766443211 11 11223345666677777778889999998999999988772 1
Q ss_pred -CCCcchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCcc
Q 015346 339 -GISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRT 403 (408)
Q Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~~ 403 (408)
++.++++.......++.+.++.++..=|+.-.+++-.|+-..+++.|++|...-+|...-++.|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~ 384 (397)
T TIGR00814 319 GKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRG 384 (397)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCC
Confidence 12234455666777778888999999999999999888888999999999999998766444443
No 16
>PRK10249 phenylalanine transporter; Provisional
Probab=99.80 E-value=2e-16 Score=155.54 Aligned_cols=235 Identities=14% Similarity=0.201 Sum_probs=162.1
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
+.+|+.+.++.....+++++|+|++..| .+.+.+|...++.+++.+++....+..+.|...+.|...+..+.+++.+|+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 4567899999999999999999999988 555677866777888889999999999999988888888999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
..++++.+..++.............+.+++.+.+.. ....+ .+..+.++-....++.+..+++.....+
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~-~~~~~~l~~~lN~~gv~~~~~i~~~~~~ 166 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV----------PTWIW-AAAFFIIINAVNLVNVRLYGETEFWFAL 166 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC----------cHHHH-HHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 999999998887776666666666666666554421 11112 2222223333445566666655543322
Q ss_pred HHHHHHhhh-------heeccccc-cccCC---CC--ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHH
Q 015346 200 ATILIVLCV-------LFLGTIEG-IGFHP---TG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (408)
Q Consensus 200 ~~~~~~~~~-------~~~~~~~~-~~~~~---~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (408)
..+..++.+ ........ ...+. .+ .+.++.++..++....|+|.|.+.+....+|+|||+ +.||++
T Consensus 167 ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 167 IKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 222111111 11111000 00000 00 112345677889999999999999999999999997 699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015346 266 ITCFALCVLIYGGVAVMGFLM 286 (408)
Q Consensus 266 ~~~~~~~~~~Y~~~g~~gy~~ 286 (408)
..+...+.++|....+.....
T Consensus 247 ~~~~~~~~~~y~~~~~~~~~~ 267 (458)
T PRK10249 247 NQVVYRILLFYIGSLVVLLAL 267 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 999999999998765544333
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.79 E-value=5.2e-16 Score=152.15 Aligned_cols=236 Identities=16% Similarity=0.092 Sum_probs=159.8
Q ss_pred CCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (408)
++|+.|.++.+...+++++|+|++.+|..+++.|..+++.+++.+++.......+.|...+.|........+++.+||+.
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~ 83 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSG 83 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcch
Confidence 35679999999999999999999999988888887778888888888888888888887767777777788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHH-HHHHHHHhhhcccCCchhHHHHHHHHHH
Q 015346 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGI-LTALIVLPTIWLRDLRVISYLSATGVVA 200 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 200 (408)
+++..+.+++........+.....+++..+++... +....+.. +..+.++-....++.+..++++.+....
T Consensus 84 gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 84 NFMANYTYGVSLLIANVAIAISAVGYGTELFGATL--------SPVQICLATIGVLWLCTVANFGGARITGQISSVTVWG 155 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------chHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 99999988776665555554445566665554210 11111211 1112222233445666666666554443
Q ss_pred HHHHHhhhheecc--ccccccCCCCccc---cccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHHHHHHH
Q 015346 201 TILIVLCVLFLGT--IEGIGFHPTGQVV---KWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVL 274 (408)
Q Consensus 201 ~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~ 274 (408)
.+...+.+...+. .+.........+. .+.++..++....|+|.|.+.+....+|+|||+ +.||++..+..++.+
T Consensus 156 ~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~ 235 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAV 235 (438)
T ss_pred HHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHH
Confidence 3322222211111 1111111110111 123566677888999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHHH
Q 015346 275 IYGGVAVMGFL 285 (408)
Q Consensus 275 ~Y~~~g~~gy~ 285 (408)
+|++.......
T Consensus 236 ~Y~l~~~~~~~ 246 (438)
T PRK10655 236 IYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHh
Confidence 99987665443
No 18
>PRK15049 L-asparagine permease; Provisional
Probab=99.78 E-value=4.7e-16 Score=154.15 Aligned_cols=346 Identities=13% Similarity=0.118 Sum_probs=199.1
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
+.+|+.+.++.....++++||+|++..| .+.+.+|..+++.+++.+++....+..+.|.+.+.|...+....+++.+|+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 3567799999999999999999999888 467888877777888888899999999999988888888999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
+.++++.+..++.............+.+...+ +... + ...+.+ .+..++++-+....+.+...+++....+
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~----~---~~~~~~-~~~~~~l~~~iN~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG----G---VPQWVF-ALAALTIVGTMNMIGVKWFAEMEFWFAL 175 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC----C---CcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887765544444444444443322 1111 0 012222 2222223333444566666665554332
Q ss_pred HHHHHHhhhh---eecccccc--ccCC-------C--C-ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHH
Q 015346 200 ATILIVLCVL---FLGTIEGI--GFHP-------T--G-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (408)
Q Consensus 200 ~~~~~~~~~~---~~~~~~~~--~~~~-------~--~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (408)
..+..++.++ ......+. +.+. . . .+.++..+..++....|+|.|.+.+....+|+|||+ +.||
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr 255 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPK 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH
Confidence 2222111111 11001110 0000 0 0 011122344556678999999999999999999998 6999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCch----hh---hhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHH----
Q 015346 264 ALITCFALCVLIYGGVAVMGFLMFGQGTL----SQ---ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSI---- 332 (408)
Q Consensus 264 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~---il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~---- 332 (408)
++..++..+.++|+...+......+.+.. +. +.+... .+....+..++..+..+.+..-.++...+.+
T Consensus 256 Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~A 334 (499)
T PRK15049 256 AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA 334 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876654444332111 11 111111 1122223333333443333333333333323
Q ss_pred -HhHcCCC----CCcc-hhHHHHHHHHHHHHHHHHHHHcC--chhHHHHHHhHHHHHHHHHHhhHHHHHHHhCC
Q 015346 333 -EELLPAG----ISNN-YWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (408)
Q Consensus 333 -~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~ 398 (408)
++.+|+. ++++ .....+...++..+..++....| .+..++++. ..+..+.|++|++.+++.||+
T Consensus 335 rdg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~--~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 335 MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFA--SLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred hcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 2223321 1111 11122222222222222333334 355556653 467888999999999998764
No 19
>PRK10746 putative transport protein YifK; Provisional
Probab=99.78 E-value=1.2e-15 Score=150.07 Aligned_cols=349 Identities=13% Similarity=0.157 Sum_probs=206.1
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
+.+|+.+.++.....++++||+|++..| .+.+.+|...++..++.+++....+..+.|.+.+.|...++.+.+++.+||
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 3567799999999999999999999877 666788875566777788888888899999988788888999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
..++++.+..++.............+.+++.+.+... ...+..+. +.++-....++.+..+++......
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~~~~~~~~-~~~~~~lN~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------QWIPALIA-VALVALANLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------hHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999998888777777777777777776654311 12222222 222222344455555544432222
Q ss_pred HHHHHHh-------hhheeccccccc---cC---CCC--ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHH
Q 015346 200 ATILIVL-------CVLFLGTIEGIG---FH---PTG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (408)
Q Consensus 200 ~~~~~~~-------~~~~~~~~~~~~---~~---~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (408)
..+..++ .+...+.....+ .+ ..+ .+.++.++..++....|+|.|.+.+....+|+|||+ ++||
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 1111111 111111111100 00 000 112345677899999999999999999999999997 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchh----h---hhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHh--
Q 015346 264 ALITCFALCVLIYGGVAVMGFLMFGQGTLS----Q---ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEE-- 334 (408)
Q Consensus 264 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----~---il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~-- 334 (408)
++..+...+.++|+...+......+.+..+ . ...+... +....+...+..+..+.+....++...|.+..
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a 314 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALA 314 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988655444333322111 1 1111111 11222233333344443433333333333322
Q ss_pred ---HcCCC----CCcc-hhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHH--HHHHHHHHhhHHHHHHHhCCCCC
Q 015346 335 ---LLPAG----ISNN-YWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSL--LSILVAIIMPSLCFIKILGRKAT 401 (408)
Q Consensus 335 ---~~~~~----~~~~-~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~--~~~~~~~ilP~l~~~~~~~~~~~ 401 (408)
.+|+. ++++ .....++..+..+....+....|+-..+++...+. .+..+.|+++++.++|.||+++.
T Consensus 315 ~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~ 391 (461)
T PRK10746 315 KNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKA 391 (461)
T ss_pred hCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22221 1111 11122222222222333444455444444443322 34578899999999999886553
No 20
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.77 E-value=1.1e-15 Score=150.44 Aligned_cols=235 Identities=16% Similarity=0.193 Sum_probs=164.8
Q ss_pred CccCCCCCCHHHHHHHHHHHhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 015346 39 ELPIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (408)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (408)
+.+.+|+.+.++.....++++||+|++.+| .+.+..|..+++.+++.+++....+..+.|...+.|...+..+.+++.+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 344677899999999999999999999999 6678888767778888888888899999999887888888999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHH
Q 015346 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (408)
Q Consensus 118 G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 197 (408)
||+.++++.+..++.....+.......++.+..+++.. ..+...+..+++.-.....+.+..++++...
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-----------PLWLFSLILTIVLTLTNLYSVKSYGEFEFWF 155 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-----------cHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999998888777777777777777777665421 1122222222223333444666666665543
Q ss_pred HHHHHHHHhhhh------eeccccccc---cC----CCCc-cccccchhhhHHHHhhhcccceehhhHHhhccchh-hHH
Q 015346 198 VVATILIVLCVL------FLGTIEGIG---FH----PTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (408)
Q Consensus 198 ~~~~~~~~~~~~------~~~~~~~~~---~~----~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (408)
.+..+..++.++ ........+ .. ..+. +.++.++..++....|+|.|.+.+....+|+|||+ +.|
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iP 235 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSIT 235 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHH
Confidence 333222111111 111000000 00 0111 12234578889999999999999999999999997 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015346 263 KALITCFALCVLIYGGVAVMGF 284 (408)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~gy 284 (408)
|++..+...+.++|++..+...
T Consensus 236 rAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 236 RATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHe
Confidence 9999888889999988655433
No 21
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.77 E-value=9.9e-17 Score=149.56 Aligned_cols=349 Identities=18% Similarity=0.222 Sum_probs=229.7
Q ss_pred CccCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 015346 39 ELPIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (408)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (408)
++..+|+.+.++--...+++.||+|. ++-..+.+.+|.--++..++.|++...-++.+.|...+.|..+++.+.+++.+
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~l 87 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYL 87 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHh
Confidence 34457889999999999999999997 45778889999887788889999999999999999988899999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHh--hhcccCCchhHHHHH
Q 015346 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLP--TIWLRDLRVISYLSA 195 (408)
Q Consensus 118 G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p--l~~~~~l~~l~~~s~ 195 (408)
|++.++++.+.+++.....+++.++.++.+++.+++... ++.+.+....++.. +...|....+..+-.
T Consensus 88 G~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP----------~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 88 GPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP----------QWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998642 33343333333333 344455555555444
Q ss_pred HHHHHHHHHHhh----hheecccccc---ccC----CCC-ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHH
Q 015346 196 TGVVATILIVLC----VLFLGTIEGI---GFH----PTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (408)
Q Consensus 196 ~~~~~~~~~~~~----~~~~~~~~~~---~~~----~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (408)
+--+..++..++ ++..+...+. ..+ +.+ .+.++.+++.++.+.+|||+|.+.+--...|-|||+ ..+
T Consensus 158 lIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ip 237 (462)
T COG1113 158 LIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIP 237 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHH
Confidence 332222222111 1121111111 111 111 234466889999999999999999999999999998 566
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHhcCCchhhhh--cCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhH
Q 015346 263 KALITCFALCVLIYG-----GVAVMGFLMFGQGTLSQIT--LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL 335 (408)
Q Consensus 263 ~~~~~~~~~~~~~Y~-----~~g~~gy~~fg~~~~~~il--~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~ 335 (408)
|++..-..-..++|. ++.+..|-.++++..+.+. ..+. -+....+.+.........+..-.++..-+.+..+
T Consensus 238 kAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iG-i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 238 KAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIG-IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcC-CcccccceeEEEeechhhcccccccccchHHHHH
Confidence 776666655556555 4444455444443322222 1111 0122223333333444445555555555555554
Q ss_pred cCCC----------CCcchhHHHHHHHHHHHHHHHHHHHcC--chhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCC
Q 015346 336 LPAG----------ISNNYWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILGRKA 400 (408)
Q Consensus 336 ~~~~----------~~~~~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~ 400 (408)
-.+. +..-.....+...+...+..++....| -|..+.+..+.. .+..+.+=.+.|+|.||.++
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk~~~ 391 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRKAKP 391 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcch
Confidence 3221 111123466677777788888999999 555555654433 44444455689999988533
No 22
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.76 E-value=2.2e-15 Score=148.74 Aligned_cols=233 Identities=12% Similarity=0.178 Sum_probs=155.6
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
+.+|+.+.++.....++++||+|++..| .+.+.+|...+..+++.+++.......+.|.....+...++.+.+++.+||
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~ 96 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGP 96 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCc
Confidence 4677899999999999999999999977 677888875566666777777777777888765455566777899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
..++++.+..++.............+.++..+.+.. ..+.+.+ ..+.++.+....+.+..++++.+...
T Consensus 97 ~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----------~~~~~~~-~~~~~~~~iN~~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 97 WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----------SDWVASL-AVVLLLLSLNLATVKMFGEMEFWFAM 165 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998887765555555666666665554321 1122222 22223333445566666666655443
Q ss_pred HHHHHHhhhheecc------ccccc-----c----CCCCc-cccccchhhhHHHHhhhcccceehhhHHhhccchh-hHH
Q 015346 200 ATILIVLCVLFLGT------IEGIG-----F----HPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (408)
Q Consensus 200 ~~~~~~~~~~~~~~------~~~~~-----~----~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (408)
..+..++.+++.+. ....+ . +..+. +.++.++..++....|+|.|.+.+....+|+|||+ +.|
T Consensus 166 ~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iP 245 (469)
T PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLP 245 (469)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHH
Confidence 33222222111110 00000 0 00111 12234578899999999999999999999999998 699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015346 263 KALITCFALCVLIYGGVAVMGF 284 (408)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~gy 284 (408)
|++..+...+.++|.+......
T Consensus 246 rai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 246 RAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHe
Confidence 9998778788888887665543
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.76 E-value=1.7e-15 Score=148.72 Aligned_cols=237 Identities=11% Similarity=0.137 Sum_probs=156.5
Q ss_pred CCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (408)
.+|+.+.++++...+++++|+|++.+|....+.|...+..+++.++........+.|...+.|........+++.+||..
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~ 85 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFL 85 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchH
Confidence 45679999999999999999999999988877775455556666666777777788887777777777777999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHH--HHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGI--LTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
++++.+..++..............++...+.+... ......+ +..+.++-.......|..++++.+...
T Consensus 86 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~ 156 (445)
T PRK10644 86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---------DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---------CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99988887766544444444444555555544211 1111111 122222333345566777777665554
Q ss_pred HHHHHHhhhheecc--ccccccCCC---CccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHHHHHH
Q 015346 200 ATILIVLCVLFLGT--IEGIGFHPT---GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCV 273 (408)
Q Consensus 200 ~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~ 273 (408)
..+..++.+...+. .++...... ....++..+..++....|+|.|.+......+|+|||+ +.||++..+..++.
T Consensus 157 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~ 236 (445)
T PRK10644 157 LALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAA 236 (445)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHH
Confidence 43332222221111 111111110 0111233555677789999999999999999999997 79999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 015346 274 LIYGGVAVMGFLMF 287 (408)
Q Consensus 274 ~~Y~~~g~~gy~~f 287 (408)
++|++..+......
T Consensus 237 v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 237 VCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHhCC
Confidence 99998877644333
No 24
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.76 E-value=1e-15 Score=149.65 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=161.2
Q ss_pred CCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (408)
.+|+.+.++.+...+++++|+|++.+|...++.|...+..+++.++........+.|...+.|......+.+++ +||..
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAF 81 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHH
Confidence 35679999999999999999999999999988887667777777888888888888888878877777778888 89999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHH
Q 015346 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 201 (408)
++.+.+..+.........+.+...+++..+++....+ .......+..+.++-+...++.+..++++.+..+..
T Consensus 82 gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~-------~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~ 154 (435)
T PRK10435 82 GFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP-------IPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLV 154 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999888776554444455555566776665532110 011111111122222344455666666665544433
Q ss_pred HHHHhhhheeccc-cccc-c--C-CCCccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHHHHHHHH
Q 015346 202 ILIVLCVLFLGTI-EGIG-F--H-PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI 275 (408)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~-~--~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~ 275 (408)
++.++.....+.. .+.+ . + ......++.++..++....|+|.|.+.+....+|+|||+ +.||++..+..++.++
T Consensus 155 li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~il 234 (435)
T PRK10435 155 LIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGII 234 (435)
T ss_pred HHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHH
Confidence 3222221111111 0110 0 0 011122345788888999999999999999999999996 7999999999999999
Q ss_pred HHHHHHHHHHHh
Q 015346 276 YGGVAVMGFLMF 287 (408)
Q Consensus 276 Y~~~g~~gy~~f 287 (408)
|++..+......
T Consensus 235 Yil~~~~~~~~~ 246 (435)
T PRK10435 235 YIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHhcC
Confidence 998877655443
No 25
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.76 E-value=1.4e-15 Score=152.36 Aligned_cols=355 Identities=13% Similarity=0.081 Sum_probs=206.9
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhHHHH--HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV--KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~--~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
+.+|+.+.++.+...+++++|+|++.+|... ...|...+..+++.++.+...+..+.|...+.|...+.....++.+|
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 4567899999999999999999999998543 35776666667777888888888888888777766666666899999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC----CCCCCCCc---ccCchhHHHHHHHHHHHhhhcccCCchhH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG----ASLDWPGF---QLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~----~~~~~~~~---~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 191 (408)
+..++++.+..++.............++++..++.. ...+..+. ..........+..++++-....++.+..+
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~ 184 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESA 184 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHH
Confidence 999999999888777666665555566666555432 11000000 00011111122222233345566888888
Q ss_pred HHHHHHHHHHHHHHhhhheeccccc--cccC-----CC-C-ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hH
Q 015346 192 YLSATGVVATILIVLCVLFLGTIEG--IGFH-----PT-G-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (408)
Q Consensus 192 ~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~-~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (408)
+++.+.....+..++.++..+.... .++. .. + .+.++.++..+.....|+|.|.+.+....+|.|||+ +.
T Consensus 185 ~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~i 264 (557)
T TIGR00906 185 WVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAI 264 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccc
Confidence 8877666554443333332222111 1111 00 1 112344678888999999999999999999999998 69
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hh---hhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHH---
Q 015346 262 TKALITCFALCVLIYGGVAVMGFLMFGQGT---LS---QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSI--- 332 (408)
Q Consensus 262 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~---~~---~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~--- 332 (408)
||++..++.+++++|.++.+.-....+.+. .+ ....... .++...+..+........+....+....+.+
T Consensus 265 P~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~am 343 (557)
T TIGR00906 265 PIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAM 343 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765433322110 11 1112111 1222222222222223222222222222222
Q ss_pred --HhHcCCC--CCcch-hHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCC
Q 015346 333 --EELLPAG--ISNNY-WCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRK 399 (408)
Q Consensus 333 --~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~ 399 (408)
++.+|+. +.+++ ..-........+++.+++.. .++..+.++. ..+..+.|.++++..+++|+++
T Consensus 344 arDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~-~~~~~l~~l~--sig~ll~y~lv~~~~l~lR~~~ 412 (557)
T TIGR00906 344 ARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL-FDLKALVDLL--SIGTLLAYSLVAACVLILRYQP 412 (557)
T ss_pred HcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH-cCHHHHHHHH--HHHHHHHHHHHHHHHHHhhccc
Confidence 2333321 11111 11111112222233334443 3566666654 3467899999998888888654
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=99.76 E-value=6.7e-16 Score=151.09 Aligned_cols=354 Identities=15% Similarity=0.168 Sum_probs=210.8
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~-~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (408)
+|+.|.++.+...+++++|+|++.+|... ...|...++.+++.++.....+..+.|...+.|+.....+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 46799999999999999999999999655 44555466667777777778888888888777777777788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccC----chhH-HHHHHHHHHHhhhcccCCchhHHHHHH
Q 015346 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLD----STHL-FGILTALIVLPTIWLRDLRVISYLSAT 196 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~-~~~i~~~~~~pl~~~~~l~~l~~~s~~ 196 (408)
+++..+..++.....+..+....++++..+++....+.+.+... ...+ ...+..++++-....++.+..++++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 99999988888777777787777888777765321111111100 0001 112223333334455678888888877
Q ss_pred HHHHHHHHHhhhheecccc--ccccCCCCccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHHHHHH
Q 015346 197 GVVATILIVLCVLFLGTIE--GIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCV 273 (408)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~ 273 (408)
.....+..++.++...... ..+.. +..+.+..++..++....|+|.|.+......+|+|||+ +.+|++..+..++.
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~ 240 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYT-PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVT 240 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcC-CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 6665544333322222111 11111 11122345677888999999999999999999999996 78999999999999
Q ss_pred HHHHHHHHHHHHHhcCCch----h---hhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHH-----HhHcCCCC-
Q 015346 274 LIYGGVAVMGFLMFGQGTL----S---QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSI-----EELLPAGI- 340 (408)
Q Consensus 274 ~~Y~~~g~~gy~~fg~~~~----~---~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~- 340 (408)
++|++..+......+.+.. + .+..+.. +++...+..+...+..+.+....+....+.. |+.+|+..
T Consensus 241 v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~ 319 (429)
T TIGR00909 241 LLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLS 319 (429)
T ss_pred HHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 9999887655433221100 0 0111111 1223333334444444444433333333333 22333210
Q ss_pred CcchhHHHHHHHHHH--HHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCC
Q 015346 341 SNNYWCFILLRTALV--FSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKAT 401 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~--~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~ 401 (408)
+.+.+.+.-.+..++ .++.++ ....+++.+.++. ..+..+.|++.++..+++||++++
T Consensus 320 ~~~~~~~~P~~a~~~~~~i~~~~-~~~~~~~~l~~~~--~~~~~~~y~~~~~a~~~lr~~~~~ 379 (429)
T TIGR00909 320 KVHPKTGTPHMSIIIFSLTAALL-ASLVPLEGLAELT--SIGTLIAFAAVNVAVIILRRRRPD 379 (429)
T ss_pred HcCCCCCCcHHHHHHHHHHHHHH-HHHcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 001111111121111 112222 2234566676654 345567788888888777765543
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.75 E-value=2.7e-15 Score=148.21 Aligned_cols=237 Identities=12% Similarity=0.117 Sum_probs=155.7
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP-~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
+.+|+.+.++.+...+++++|+|++..| .+.+.+|.. .++.+++.+++.......+.|.+.+.|....+...+++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 4567799999999999999999999888 455788865 56677788888888888999988888888888899999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 198 (408)
+..++++.+..++.....+.......+..+..+.+. . ....+.++. .+++-+...++.+..++.+....
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~------~~~~~~~~~-~~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----V------PVWPWCLLF-CALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----C------cHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999888776665554444444444433321 1 111222222 22233344455665555443332
Q ss_pred HHHHHHHhhhhee------c-cc-cccc-------cCCCCc-cccccchhhhHHHHhhhcccceehhhHHhhccchh-hH
Q 015346 199 VATILIVLCVLFL------G-TI-EGIG-------FHPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (408)
Q Consensus 199 ~~~~~~~~~~~~~------~-~~-~~~~-------~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (408)
+..+..++.++.. . .. ...+ ++..++ +.+..++..++....|+|.|.+.+....+|+|||+ ++
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 2222111111110 0 00 0000 000000 11122466777888999999999999999999998 69
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015346 262 TKALITCFALCVLIYGGVAVMGFLMFG 288 (408)
Q Consensus 262 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg 288 (408)
||++..+..++.++|+...+......+
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999988765443333
No 28
>PRK11021 putative transporter; Provisional
Probab=99.75 E-value=4.5e-15 Score=144.24 Aligned_cols=228 Identities=18% Similarity=0.200 Sum_probs=154.6
Q ss_pred CCHHHHHHHHHHHhhccccchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhH
Q 015346 46 CSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~LP~-a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (408)
.+.++++...+++++|+|++.+|. +.+.+|...+..+++.++........+.|...+.|+.......+++.+||+.++.
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 478999999999999999999995 4466675577788888888888889999998888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Q 015346 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 204 (408)
..+..+...............+++...++.. . ...+...+..++++-+...++.+..++++.+..+..+..
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWS-----S----WQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-----C----chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9888776443333333334445555554320 0 111222222222333445566777776665543322222
Q ss_pred HhhhheeccccccccCC-CCccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHHHHHHHHHHHHHHH
Q 015346 205 VLCVLFLGTIEGIGFHP-TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVM 282 (408)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~Y~~~g~~ 282 (408)
..........+..+.+. .....++.++..++....|+|.|.+.+....+|+|||+ +.||++..+..++.++|++..+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 21111111111111110 11123455678889999999999999999999999996 79999999999999999998765
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.74 E-value=1.2e-14 Score=143.14 Aligned_cols=233 Identities=14% Similarity=0.210 Sum_probs=158.4
Q ss_pred ccCCCCCCHHHHHHHHHHHhhccccchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~-a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
++.+|+.|.++.+...+++++|+|++.+|. +.+.+|...++.+++.++.....+..+.|...+.|......+.+++.+|
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 445677999999999999999999999985 4567776577778888888888889999988878888888889999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 198 (408)
|..++++.+..++.............+.+...+++... ...+.+ ..+++.-....++.+..++++....
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVL-SVVLIICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHH-HHHHHHHHHHHccchhHHHHHHHHH
Confidence 99999999988877655555555556666665544211 122222 2222333445556666666654433
Q ss_pred HHHHHHHhhh-------heecccc-ccc------cCCCC-ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHH
Q 015346 199 VATILIVLCV-------LFLGTIE-GIG------FHPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (408)
Q Consensus 199 ~~~~~~~~~~-------~~~~~~~-~~~------~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (408)
...+..++.+ ......+ +.. ++..+ .+.++.++..++....|+|.|.+......+|+|||+ +.|
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iP 233 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIP 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHH
Confidence 3222211111 1111111 100 11111 112234567788889999999999999999999998 599
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015346 263 KALITCFALCVLIYGGVAVMG 283 (408)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~g 283 (408)
|++..+...+.++|....+..
T Consensus 234 rAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 234 RAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888775543
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.74 E-value=5.9e-15 Score=145.09 Aligned_cols=230 Identities=11% Similarity=0.160 Sum_probs=157.6
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~-a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
+.+|+.+.++.....++++||+|++..|. +.+.+|...++..++.++.....+..+.|...+.|...++.+.+++.+||
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 35678999999999999999999999885 45666754566777888888888888999888889888999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
..++++.+..++.....+.......+++++.+.++. ..+.+.+ ....++-.....+.+..++++.....
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~-i~~~~~~~lN~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI----------PTWVSAA-VFFVVINAINLTNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC----------cHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999998887777777777788877665421 1222222 22222233334455666666554433
Q ss_pred HHHHHHhhh-----he-eccccccc--c----CCCCc-cccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHH
Q 015346 200 ATILIVLCV-----LF-LGTIEGIG--F----HPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (408)
Q Consensus 200 ~~~~~~~~~-----~~-~~~~~~~~--~----~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (408)
..+..++.+ .. ........ . +.... +..+.++..++....|+|.|.+......+|+|||+ +.||++
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi 237 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHH
Confidence 332221111 11 11001100 0 00111 11233555677889999999999999999999997 699999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015346 266 ITCFALCVLIYGGVAV 281 (408)
Q Consensus 266 ~~~~~~~~~~Y~~~g~ 281 (408)
..+...+.+.|+....
T Consensus 238 ~~~~~~i~~~y~~~~~ 253 (456)
T PRK10238 238 NQVIYRILIFYIGSLA 253 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888888876533
No 31
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.74 E-value=2.6e-15 Score=143.35 Aligned_cols=335 Identities=16% Similarity=0.224 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchh
Q 015346 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (408)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (408)
+.|.+|.+..++++++|+|++.+|....+.+-. +++..++.++........+.+..++.|++ +..+..++.+||+.+.
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGR 80 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHH
Confidence 589999999999999999999999887665544 77777777888888888888888766654 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHH
Q 015346 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (408)
Q Consensus 124 ~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 203 (408)
+..+....+............++.++...-. + .. .+...+..++..-....++.+..++.+.+.....+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~------tp-~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~ 150 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYLLP---R------TP-IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLI 150 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C------CC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 9888888777777666666777777654321 0 01 122222333333344556888888888876655444
Q ss_pred HH-hhhheecccc-ccccCCCCccccccchhhhHH-HHhhhcccceehhhHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 015346 204 IV-LCVLFLGTIE-GIGFHPTGQVVKWSGMPFAIG-IYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVA 280 (408)
Q Consensus 204 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g 280 (408)
.. +.+....... +.+.-.+....++.+...+.. ...++|.+.+.+....+++|||+|.+|+...+..++.++|....
T Consensus 151 ~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~~ 230 (359)
T TIGR00912 151 LFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILTT 230 (359)
T ss_pred HHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 31 2222211111 111111222234555555554 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhhh-------hcCCCCchHHHHH---HHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCcchhHHHHH
Q 015346 281 VMGFLMFGQGTLSQI-------TLNMPPHAFASKV---AVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILL 350 (408)
Q Consensus 281 ~~gy~~fg~~~~~~i-------l~~~~~~~~~~~v---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (408)
+.....+|.+..++. .+...-.+...++ .........+.+.....+.....+.+++..++.+ ....
T Consensus 231 ~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 306 (359)
T TIGR00912 231 FVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYS----ILIL 306 (359)
T ss_pred HHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc----hhHH
Confidence 988888885433321 1111111222222 2233345556677777778888888887543211 1222
Q ss_pred HHHHHHHHHHHHHHcCc-hhHH---HHHHhHHHHHHHHHHhhHHHHHHHhCC
Q 015346 351 RTALVFSSVCAAFLLPF-FSLV---MALIGSLLSILVAIIMPSLCFIKILGR 398 (408)
Q Consensus 351 ~~~~~~~~~~la~~~p~-~~~~---~~l~Ga~~~~~~~~ilP~l~~~~~~~~ 398 (408)
.... ..+.++. .|+ .... .+..+ ..+....+++|.++.+...-|
T Consensus 307 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 307 PVLM--VIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred HHHH--HHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2333333 443 3221 12222 234567778899876665433
No 32
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.74 E-value=5.8e-15 Score=145.79 Aligned_cols=239 Identities=13% Similarity=0.128 Sum_probs=159.2
Q ss_pred CCCCHHHHHHHHHHHhhccccchhHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-ChHHHHHHhcccc
Q 015346 44 HGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGIT-TYPDIGEAAFGKY 120 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~LP~a~-~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~y~~l~~~~~G~~ 120 (408)
|+.|.++.+...++++||+|++.+|... +.+|.. .++.+++.++.....+..+.|...+.|+.. ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 4689999999999999999999999665 566655 556677888888888888889887777654 6777799999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHH-HHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFG-ILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
.+++..+..++........+.....+.+..+++.... . .....+. .+..+..+-....+..+..++++.+..+
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-----~-~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-----G-NNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----C-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999888776555666666666666655543211 0 0111111 1122222333344677777776665544
Q ss_pred HHHHHHhhhheec--cccccc-----cCCCC----ccccccchhhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHH
Q 015346 200 ATILIVLCVLFLG--TIEGIG-----FHPTG----QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITC 268 (408)
Q Consensus 200 ~~~~~~~~~~~~~--~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 268 (408)
..+...+.++..+ ...... ++... ....+.++..++....|+|.|.+......+|.||+|+.+|++..+
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~ 234 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIG 234 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHH
Confidence 4332222111111 011100 00000 011123455678889999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 015346 269 FALCVLIYGGVAVMGFLMFG 288 (408)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg 288 (408)
...+.++|.++.+..+...+
T Consensus 235 ~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 235 LIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHhCcC
Confidence 99999999998877665443
No 33
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.73 E-value=6.8e-15 Score=145.47 Aligned_cols=237 Identities=14% Similarity=0.105 Sum_probs=159.7
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhc-HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCChHHHHHHhccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAG-WA-SLVVLLLFAVVCCYTASLMRYCFESKEG-ITTYPDIGEAAFGK 119 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G-~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~l~~~~~G~ 119 (408)
+|+.|.++++...+++++|+|++.+|....+.| .. .++.+++.++.....+..+.|...+.|+ .....+..++.+||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 567999999999999999999999998876544 43 4566777777777788888888877777 67777789999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHH-HHHHHHHHHhhhcccCCchhHHHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLF-GILTALIVLPTIWLRDLRVISYLSATGV 198 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 198 (408)
+.+++..+.+++........+.....+++..+++....+ +..... ..+..++++-....++.+..++++.+..
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~------~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG------NPVPSILGASVLLWVFTFLVLRGVRQAAFINTITT 159 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999998877665555666666666666666522100 111111 1122222233445567777777776655
Q ss_pred HHHHHHHhhhheecc--ccccc--cC--CC--Cc-cccccchhhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHHH
Q 015346 199 VATILIVLCVLFLGT--IEGIG--FH--PT--GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCF 269 (408)
Q Consensus 199 ~~~~~~~~~~~~~~~--~~~~~--~~--~~--~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 269 (408)
...+...+.++..+. .+... .+ .. +. ...+..+..++....|+|.|.+......+|+||+|+.||++..+.
T Consensus 160 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~~ 239 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLGT 239 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHHH
Confidence 443332222111111 11111 11 11 01 112345667788899999999999999999999668999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015346 270 ALCVLIYGGVAVMGFL 285 (408)
Q Consensus 270 ~~~~~~Y~~~g~~gy~ 285 (408)
.++.++|++.......
T Consensus 240 ~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 240 LGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988766443
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.72 E-value=2.8e-14 Score=141.67 Aligned_cols=236 Identities=12% Similarity=0.103 Sum_probs=151.4
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP-~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
+.+|+.+.++.+...++++||+|++.+| .+.+.+|.. .++.+++.+++....+..+.|...+.|........+++.+|
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g 91 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVE 91 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcC
Confidence 4567799999999999999999999999 566788876 67888899999999999999999889998899899999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 198 (408)
+..++++.+..++................+..+.+. .+ ...+.. ..+.++-.....+.+..++.+....
T Consensus 92 ~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----~~------~~~~~~-~~~~~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 92 EGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----TP------GWIWSA-LFLGVIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----Cc------hHHHHH-HHHHHHHHHHHHcchhhhhhHHHHH
Confidence 999998888877654443333333333333333221 11 111222 2222222333445554444433222
Q ss_pred HHHHHH---Hh---hhheeccc-ccc-----ccCCC--CccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHH
Q 015346 199 VATILI---VL---CVLFLGTI-EGI-----GFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (408)
Q Consensus 199 ~~~~~~---~~---~~~~~~~~-~~~-----~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (408)
+..+.. ++ .+...+.. .+. +++.. +...++..+..+.....|+|.|.+.+....+|+|||+ +.||
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr 240 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPR 240 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHH
Confidence 111111 11 11111111 110 01000 0111223344455566799999999999999999997 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 015346 264 ALITCFALCVLIYGGVAVMGFLMF 287 (408)
Q Consensus 264 ~~~~~~~~~~~~Y~~~g~~gy~~f 287 (408)
++..++..+.++|+...+......
T Consensus 241 Ai~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 241 AVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHheec
Confidence 999999999999998876544443
No 35
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.72 E-value=9.2e-16 Score=145.42 Aligned_cols=350 Identities=14% Similarity=0.135 Sum_probs=221.1
Q ss_pred ccCCCCCCHHHHHHHHHHHhhccccchhHHHH-HhhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA--SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~-~~~G~~--g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (408)
.+.+|+.+.+.++..+++.++|+|++..|... +++|.+ +++.+++.++++...+....|.....++...+.....++
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~a 87 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEA 87 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHH
Confidence 34567899999999999999999999999777 677765 677888999999999999999876555444444448999
Q ss_pred ccccchhHHHHHHHHHHHHHH-HHHHHHhhhh-hhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhH---
Q 015346 117 FGKYGRLLISVLLYTELYSYC-VEFIILEGDN-LTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVIS--- 191 (408)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~--- 191 (408)
||+..++...+.-++...... ..+.+..+++ ++.+++. . + ..+....++.+.++..+... |..+++
T Consensus 88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c-~------~p~~~~~lla~~~l~~lt~~-n~~~V~~a~ 158 (479)
T KOG1287|consen 88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-C-D------VPRVASKLLAAALLVLLTLI-NSFSVKWAT 158 (479)
T ss_pred hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-C-C------CchHHHHHHHHHHHHHHHHH-hhhhhhHHH
Confidence 999988876665555554444 6677777787 7777762 1 1 11222333333333333322 444444
Q ss_pred HHHHHHHHHHHHHHhhhheeccc-------cccccC-CCCccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHH
Q 015346 192 YLSATGVVATILIVLCVLFLGTI-------EGIGFH-PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (408)
Q Consensus 192 ~~s~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (408)
+++.+..++.+.....+++.+.. ++...+ .++...+..++..++-...|||.|+..+-.+.+|+|||+ .+|
T Consensus 159 ~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP 238 (479)
T KOG1287|consen 159 RVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLP 238 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccch
Confidence 44444444444333333333221 111111 233344556788899999999999999999999999997 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcC------CCC---chHHHHHHHHHHHHhhhhhhhhhhhhhHHHH-
Q 015346 263 KALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLN------MPP---HAFASKVAVWTTVINPFTKYALLMNPLARSI- 332 (408)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~------~~~---~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~- 332 (408)
+++.+++.++++.|+++.+..+.+-. .++++.+ +.+ +++. ...-++..++.+.+..-.++...+.+
T Consensus 239 ~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~ 314 (479)
T KOG1287|consen 239 RAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFY 314 (479)
T ss_pred HHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99999999999999999876554432 2222211 100 1222 44455555555555554444443333
Q ss_pred ----HhHcCCCC-CcchhH-HHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCc
Q 015346 333 ----EELLPAGI-SNNYWC-FILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATR 402 (408)
Q Consensus 333 ----~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~ 402 (408)
|+.+|... ..+.++ .-...+++.....++..+.+|+..+++..+-.......+.+=+++++|.++++.+|
T Consensus 315 ~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~r 390 (479)
T KOG1287|consen 315 AGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPR 390 (479)
T ss_pred HHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 33444321 011111 11123333344455555566899999999877777778888888888877766554
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.70 E-value=2.3e-14 Score=140.66 Aligned_cols=230 Identities=14% Similarity=0.111 Sum_probs=156.5
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWAS-LVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
+.+|+.|.++.+...++.++|....+.+.+++..|+.+ +...++.++.....+..+.|.+.+.|........+++.+||
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGP 83 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCc
Confidence 35677999999999999999855456788889999984 45556666677777778888888888888888899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
..++++.+..++........+....++++..+++... .+...+ ....++-+...++.+..++++....+
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~-~~~~~~~~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 84 WGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAAL-VFYIVFIGINILGVGEAAKLEFVVTA 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999988887777777788888888877765321 112222 22222223444566666666554433
Q ss_pred HHHHHHhhhheecc--cccccc-----CCCC--ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHH
Q 015346 200 ATILIVLCVLFLGT--IEGIGF-----HPTG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCF 269 (408)
Q Consensus 200 ~~~~~~~~~~~~~~--~~~~~~-----~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~ 269 (408)
..+..+++.+.... .+..+. .... ....+.++..++....|+|.|++......+|+|||+ +.+|++..+.
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~ 232 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAI 232 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHH
Confidence 32222111111110 000000 0000 011223566777888999999999999999999997 7999999999
Q ss_pred HHHHHHHHHHHH
Q 015346 270 ALCVLIYGGVAV 281 (408)
Q Consensus 270 ~~~~~~Y~~~g~ 281 (408)
.++.++|+...+
T Consensus 233 ~~~~~~~~~~~~ 244 (442)
T TIGR00908 233 LTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHH
Confidence 999888887644
No 37
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.69 E-value=2.9e-14 Score=149.38 Aligned_cols=240 Identities=15% Similarity=0.103 Sum_probs=167.0
Q ss_pred CCCCCCHHHHHHHH-HHHhhccccch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCChHHHHHHhc
Q 015346 42 IAHGCSFTQTIFNG-INVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES-KEGITTYPDIGEAAF 117 (408)
Q Consensus 42 ~~~~~s~~~~~~~l-~~~~iG~Gil~-LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~y~~l~~~~~ 117 (408)
..++.+++++++.- +..++|+|++. +++...++|.. +++.+++.++++..++..+.+.+.+ .++...-..+.++.+
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisral 153 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSL 153 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 34678999999988 99999999976 66888999977 8888999999999999999998875 555555566789999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHH
Q 015346 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (408)
Q Consensus 118 G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 197 (408)
|+..+..+.++.++.....+..|.+..++++..+++................+.. .+++++.+....+.+..++++.+.
T Consensus 154 Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~-i~l~ll~~In~~Gvk~~ak~q~vl 232 (953)
T TIGR00930 154 GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGT-VTVVVLLGISFAGMEWENKAQVLF 232 (953)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHH-HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999989999888888888899999999998887753211000000111122222 222223333444667777777665
Q ss_pred HHHHHHHHhhhheecccccccc---------------CCCCccccc-cchhhhHHHHhhhcccceehhhHHhhccchh-h
Q 015346 198 VVATILIVLCVLFLGTIEGIGF---------------HPTGQVVKW-SGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (408)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 260 (408)
++..++.++.+++.+.....+. +..+...+. .++...++++++||.|......+.+|+|||+ .
T Consensus 233 ~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~ 312 (953)
T TIGR00930 233 LVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKA 312 (953)
T ss_pred HHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Confidence 5544433333332222111000 000111111 2377788888899999999999999999997 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015346 261 FTKALITCFALCVLIYGGVAVM 282 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~Y~~~g~~ 282 (408)
+|+++..++.+++++|+++.+.
T Consensus 313 IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 313 IPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.69 E-value=2.1e-14 Score=143.11 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=155.1
Q ss_pred ccCCCCCCHHHHHHHHHHHhhccccchhHHH-HHhhcHHH--HHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWAS--LVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a-~~~~G~~g--~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (408)
++.+|+.|.++.+...+++++|+|++..|.. ...+|..| ++.+++.+++....+..+.|...+.|.........++.
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~ 117 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEV 117 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhH
Confidence 4567789999999999999999999998855 56677544 34556777778888888888887777777777779999
Q ss_pred ccccchhHHHHHHHHH-HHHHHHHHHHHhhhhhhh-ccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHH
Q 015346 117 FGKYGRLLISVLLYTE-LYSYCVEFIILEGDNLTS-LFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLS 194 (408)
Q Consensus 117 ~G~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 194 (408)
+||..+++..+..+.. ..+.+..+....++++.+ +.+... .+.+ ......+..+.++-....++.+...+++
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~--~~~~----~~~~i~~~~i~~~~~ln~~Gvk~~~~~~ 191 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCE--VPEW----AIRLVAVLCVLLLTLVNCLSVKWATRVQ 191 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CchH----HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999888877765432 223344444555555432 332211 0100 0111112222233334455677777777
Q ss_pred HHHHHHHHHHHhhhheecc---cccc-c-cCCCCc----cccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHH
Q 015346 195 ATGVVATILIVLCVLFLGT---IEGI-G-FHPTGQ----VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKA 264 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~---~~~~-~-~~~~~~----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~ 264 (408)
.+.....+..++.++..+. ..+. . .+.... ..+..++..++....|+|.|.+.+....+|+|||+ +.||+
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrA 271 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIA 271 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHH
Confidence 6655544433222221111 1111 1 111100 11234577788899999999999999999999997 79999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 015346 265 LITCFALCVLIYGGVAVMGFLMF 287 (408)
Q Consensus 265 ~~~~~~~~~~~Y~~~g~~gy~~f 287 (408)
+..+..++.++|++..+......
T Consensus 272 i~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 272 IIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999866554433
No 39
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.67 E-value=9e-14 Score=137.90 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=157.0
Q ss_pred CCCCHHHHHHHHHHHhhccccchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCChHHHHHHhcccc
Q 015346 44 HGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKE-GITTYPDIGEAAFGKY 120 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~LP-~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~y~~l~~~~~G~~ 120 (408)
|+.+.++.....+++++|+|++..| .+.+.+|.. .+..+++.+++....+..+.|...+.| ....|...+++.+|+.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~ 81 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPA 81 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcH
Confidence 5689999999999999999999877 667788866 466777888888888888999888777 4457889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHH
Q 015346 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 200 (408)
.++++.+.+++.....+.......+..+..+.+... ...+.. ....++-+...++.+..++++......
T Consensus 82 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~in~~gv~~~~~~~~~~~~~ 150 (478)
T TIGR00913 82 FGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN----------PAVWIA-IFYVFIVIINLFGVKGYGEAEFWFSSI 150 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999998888777777777777777765433110 111222 122233344555677766666544322
Q ss_pred HHHHHhhh------heeccccccc------cCCCC-ccc-----cccchhhhHHHHhhhcccceehhhHHhhccchh-hH
Q 015346 201 TILIVLCV------LFLGTIEGIG------FHPTG-QVV-----KWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (408)
Q Consensus 201 ~~~~~~~~------~~~~~~~~~~------~~~~~-~~~-----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (408)
.+..++.+ .......... +..+. ... .+.++..++....|+|.|.+......+|+|||+ +.
T Consensus 151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 230 (478)
T TIGR00913 151 KILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSI 230 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHH
Confidence 22111111 1111000000 00000 111 134567788889999999999999999999997 79
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015346 262 TKALITCFALCVLIYGGVAVM 282 (408)
Q Consensus 262 ~~~~~~~~~~~~~~Y~~~g~~ 282 (408)
||++..+..++.++|++..+.
T Consensus 231 Prai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 231 PRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987543
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.67 E-value=1.2e-13 Score=135.46 Aligned_cols=330 Identities=13% Similarity=0.133 Sum_probs=193.3
Q ss_pred HHHHhhccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhHHHHHHHHHH
Q 015346 55 GINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTEL 133 (408)
Q Consensus 55 l~~~~iG~Gil~LP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~ 133 (408)
.++++||+|++..| .+.++.|...++..++.+++....+..+.|...+.|......+.+++.+||..++++.+..++..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 46789999999988 57788897678888889999999999999998888888899999999999999999999888776
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhhhee--
Q 015346 134 YSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFL-- 211 (408)
Q Consensus 134 ~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~-- 211 (408)
...........+..+....++. ..+...+..+.++-+....+.+..++++.+.....+...+.++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPGI-----------PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHhccccC-----------cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555554443211 111222222222333344566666666655443332222211111
Q ss_pred ----ccccccc-c------CCCC-ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHHHHHHHHHHH
Q 015346 212 ----GTIEGIG-F------HPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGG 278 (408)
Q Consensus 212 ----~~~~~~~-~------~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~Y~~ 278 (408)
+.....+ . +..+ .+..+.++..++....|+|.|.+.+....+|+|||+ +.||++..+...+.++|++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 1000000 0 0000 112344778899999999999999999999999998 6999999999999999998
Q ss_pred HHHHHHHHhcCCchh--------hhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHh-----HcCCC----CC
Q 015346 279 VAVMGFLMFGQGTLS--------QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEE-----LLPAG----IS 341 (408)
Q Consensus 279 ~g~~gy~~fg~~~~~--------~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~~----~~ 341 (408)
..+......+.+..+ ...+... .+....+...+..+..+.+..-.++...|.+.. .+|+. ++
T Consensus 232 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~ 310 (446)
T PRK10197 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR 310 (446)
T ss_pred HHHHHheecCcCcccccccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc
Confidence 766543332221110 1122222 122233333333444444444333333333322 22221 11
Q ss_pred cc-hhHHHHHHHHHHHHHHHHHHHcC--chhHHHHHHhHHHHHHHHHHhhHHHHHHHhCC
Q 015346 342 NN-YWCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (408)
Q Consensus 342 ~~-~~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~ 398 (408)
++ .....+...+...+..+.....| .++.++++.+. ...+.|+++++.+++.||+
T Consensus 311 ~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~--~~li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 311 SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGA--IALLVYLVIAVSQLRMRKI 368 (446)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 11 11122222222222222222222 46667766553 4458899999999998874
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.65 E-value=8.8e-14 Score=136.08 Aligned_cols=348 Identities=14% Similarity=0.194 Sum_probs=204.8
Q ss_pred CCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCChHHHHHHhccccchhH
Q 015346 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC-CYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (408)
+|+++.+...+++++|+|++..| .....|...+...++.+.+. ......+.|...+.++........++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 47899999999999999999999 77777765555555555555 56777777877768888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHH-H
Q 015346 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI-L 203 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~-~ 203 (408)
..+..+.........+....++.+...+.. +..++. .......+..++.......++.|..++++.......+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGP---DLNPSP--WPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTG---GGTCSH--HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhcccc---cccccc--chheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence 999998888888877888888888776642 110100 0111112222233333445566777777665555444 2
Q ss_pred HHhhhheeccc----ccccc----CCCCccccccchhhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHHHHHHHHH
Q 015346 204 IVLCVLFLGTI----EGIGF----HPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLI 275 (408)
Q Consensus 204 ~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~ 275 (408)
..+.++..+.. +.... .....+..+..+..++....|+|.|.+......+|+|| |+.+|++..+..++.++
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~ 233 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAII 233 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHH
Confidence 22222211111 11110 01122223445788999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHHHhcCCchh---h-------hhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHH-----HhHcCCCC
Q 015346 276 YGGVAVMGFLMFGQGTLS---Q-------ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSI-----EELLPAGI 340 (408)
Q Consensus 276 Y~~~g~~gy~~fg~~~~~---~-------il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~ 340 (408)
|.+.........+++..+ + +.+... +.+...+..+...+..+.+....+....|.+ ++.+|+..
T Consensus 234 y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 312 (426)
T PF13520_consen 234 YILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWF 312 (426)
T ss_dssp HHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGG
T ss_pred Hhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhcccccccccchhhhh
Confidence 999877666555432211 1 001111 1123333334444444444444443333333 23344221
Q ss_pred CcchhHHHHHHH--HHHHHHHHHHH---HcC--chhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCcc
Q 015346 341 SNNYWCFILLRT--ALVFSSVCAAF---LLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRT 403 (408)
Q Consensus 341 ~~~~~~~~~~~~--~~~~~~~~la~---~~p--~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~~ 403 (408)
.+.++.+.-.+. ....++.++.. ..| ++..+.+. +.....+.|+++.+.+++.+++++..+
T Consensus 313 ~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (426)
T PF13520_consen 313 AKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSL--SSVGYLISYILVILAVLFLRRKRPDLK 380 (426)
T ss_dssp GTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHSCSSG
T ss_pred hhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCCcC
Confidence 011111111111 11122212222 223 45555554 344677778888888887777655543
No 42
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.61 E-value=4.6e-13 Score=131.60 Aligned_cols=235 Identities=14% Similarity=0.095 Sum_probs=149.3
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhHHHH-HhhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA--SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~-~~~G~~--g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (408)
+.+|+.|.++.+...++.++|+|++..|... ...|.. .+..+++.+++....+..+.|...+.|+........++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 4567899999999999999999999988654 556643 4556667777777778888887765665554445588999
Q ss_pred cccchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHH
Q 015346 118 GKYGRLLISVLLY-TELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (408)
Q Consensus 118 G~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 196 (408)
||..+++..+..+ .........+....++++....+. .. .......+..+..+-....++.+..++++.+
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--------~~-~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI--------DP-LLGKFIAAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------ch-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9998888888644 333334445556666666544321 00 0011111122222233445566666666665
Q ss_pred HHHHHHHHHhhhheecc--ccccccCCC-Cc----cccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHH
Q 015346 197 GVVATILIVLCVLFLGT--IEGIGFHPT-GQ----VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (408)
Q Consensus 197 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~ 268 (408)
.....+...+.++..+. ..+.++... .. ..++.++..++....|+|.|.+......+|+|||+ +.||++..+
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~ 235 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGS 235 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHH
Confidence 55443332221111111 111111111 10 11134566778889999999999999999999997 689999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015346 269 FALCVLIYGGVAVMGF 284 (408)
Q Consensus 269 ~~~~~~~Y~~~g~~gy 284 (408)
..++.++|++......
T Consensus 236 ~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 236 CLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998766443
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.55 E-value=1.1e-11 Score=122.65 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=165.0
Q ss_pred ccCCCCCCHHH-HHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 40 LPIAHGCSFTQ-TIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 40 ~~~~~~~s~~~-~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
++.+++.+.++ ......+.++|.|++.+|......+....+.+++.+++....+..+.+...+.++...+.+..++.+|
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g 87 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALG 87 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcC
Confidence 34456678888 88999999999999999988866652233335555666666667777777666766777777999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDS-THLFGILTALIVLPTIWLRDLRVISYLSATG 197 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 197 (408)
|+.++++.+..++.............++.+..+++... ...... ......+....++-+...++.+..++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG----LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99889999999998888888888888887777776421 001111 1111222223333344555666666666655
Q ss_pred HHHHHHHHhhhheecccccc-c-cCCCC----ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHHH
Q 015346 198 VVATILIVLCVLFLGTIEGI-G-FHPTG----QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFA 270 (408)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~ 270 (408)
.+..+...+.+......... . .+... .......+..++....++|.|.+...+..+|+|||+ +.+|++..+..
T Consensus 164 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~ 243 (466)
T COG0531 164 TILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLL 243 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 55444333332222111111 0 11111 112233577888889999999999999999999996 78999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 015346 271 LCVLIYGGVAVMGFLMFGQ 289 (408)
Q Consensus 271 ~~~~~Y~~~g~~gy~~fg~ 289 (408)
++.++|+...+......++
T Consensus 244 ~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 244 IVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHhCccH
Confidence 9999999988877766654
No 44
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.49 E-value=1.8e-11 Score=114.83 Aligned_cols=283 Identities=18% Similarity=0.219 Sum_probs=194.2
Q ss_pred CCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhH
Q 015346 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (408)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (408)
|+|..|....+..+++|+|++.+|....+.+--|++..++.+.........+.+..+ +.+.++..|+.++.+||+.+.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l~~-~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYLLK-RFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHhCcHHHHH
Confidence 479999999999999999999999887544301444444444555555555555554 5566899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHH
Q 015346 125 ISVLLYTELYSYCVEFIILEGDNLTSLF-PGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~y~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 203 (408)
..+...++.+......+...++.++... ++. ..+......++..-....++++.+++.+.+-......
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~T-----------P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPET-----------PIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-----------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9998888888888888888888887754 321 1223333333444445567999999877665554444
Q ss_pred HHhhhheeccccccccC--CCCccccccchhhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 015346 204 IVLCVLFLGTIEGIGFH--PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAV 281 (408)
Q Consensus 204 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~ 281 (408)
..+.+.... .++.+++ .+....++.++..+.....+.|.+...+..+.+.+++|+|..|....+..++.++|...-+
T Consensus 149 ~~~~i~~~~-~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 227 (320)
T PF03845_consen 149 LLLLILLLS-IPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIF 227 (320)
T ss_pred HHHHHHHHh-cccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 2222222 2333456778888988899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhhhh-------cCCCCchHHHHH---HHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCC
Q 015346 282 MGFLMFGQGTLSQIT-------LNMPPHAFASKV---AVWTTVINPFTKYALLMNPLARSIEELLPAGI 340 (408)
Q Consensus 282 ~gy~~fg~~~~~~il-------~~~~~~~~~~~v---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 340 (408)
.....||.+..++.. +..+-.+...++ .........+.+.....+-..+.+.+.++.++
T Consensus 228 ~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 228 ITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999965333211 111111122222 22333445566777777788888888886543
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.49 E-value=2.2e-10 Score=113.54 Aligned_cols=249 Identities=11% Similarity=0.030 Sum_probs=150.7
Q ss_pred ccCCCCCCHHHHHHHHHHHh-hccccchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 015346 40 LPIAHGCSFTQTIFNGINVM-AGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~-iG~Gil~LP-~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (408)
++.+|+.|.++.+..-++.+ +|+|+.+++ .+....|...+..+++.++.....+..+.|...+.|........+++.+
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 34567799999999999875 899998877 5666777645556667777788888888888887888888888899999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC--CCCCCcc-cCc--hhHHHHHHHHHHHhhhcccCCchhHH
Q 015346 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGAS--LDWPGFQ-LDS--THLFGILTALIVLPTIWLRDLRVISY 192 (408)
Q Consensus 118 G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~--~~~~~~~-~~~--~~~~~~i~~~~~~pl~~~~~l~~l~~ 192 (408)
||..++++.+..++................+..+.+... ...+.+. ... ..+...+..+++.-+....+.|..++
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999998888776554444434333444433321110 0000010 001 11122222222333344456666666
Q ss_pred HHHHHHHHHHHHHhhhheecc---ccccc--cCCC--Ccccc-ccchhhhHHHHhhhcccceehhhHHhhccchh-hHHH
Q 015346 193 LSATGVVATILIVLCVLFLGT---IEGIG--FHPT--GQVVK-WSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (408)
Q Consensus 193 ~s~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~--~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (408)
++.+..+..+..++.++.... ..+.. .+.. +...+ ...+..+.....|+|.|.+......+|+|||+ +.||
T Consensus 169 i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr 248 (475)
T TIGR03428 169 VNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPR 248 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhH
Confidence 665544433322222111111 11110 0000 01111 12344455667899999999999999999997 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 015346 264 ALITCFALCVLIYGGVAVMGFLMFG 288 (408)
Q Consensus 264 ~~~~~~~~~~~~Y~~~g~~gy~~fg 288 (408)
++..+..++.++|.+.-+......+
T Consensus 249 ai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 249 TILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999988877766555444443
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.48 E-value=9e-11 Score=116.61 Aligned_cols=239 Identities=5% Similarity=-0.045 Sum_probs=138.6
Q ss_pred cCCCCCCHHHHHHHHHHHhhc--cccch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 015346 41 PIAHGCSFTQTIFNGINVMAG--VGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG--~Gil~-LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (408)
+.+|+.|.++.+...++. +| +|+.. .+.+....|.. .+..+++.+++....+..+.|...+.|........++++
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~ 87 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKL 87 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHh
Confidence 356778999988888884 44 56644 55677788886 567788888888888899999988888888888889999
Q ss_pred ccc----cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHH--HHHHHHhhhcccCCchh
Q 015346 117 FGK----YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGIL--TALIVLPTIWLRDLRVI 190 (408)
Q Consensus 117 ~G~----~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~l~~l 190 (408)
+|+ ...+++.+..++.....+.......++++.......... +.+. ..++...++ ....++-+......|..
T Consensus 88 ~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 88 APPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYI-PTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcc-ccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 875 445666666666555555555555555554433211100 0000 111111111 12222333344455555
Q ss_pred HHHHHHHHHHHHHHHhhhh-e--eccccc---cc--cCC-CCcc----ccccchhhhHHHHhhhcccceehhhHHhhccc
Q 015346 191 SYLSATGVVATILIVLCVL-F--LGTIEG---IG--FHP-TGQV----VKWSGMPFAIGIYGFCYSGHSVFPNIYQSMAD 257 (408)
Q Consensus 191 ~~~s~~~~~~~~~~~~~~~-~--~~~~~~---~~--~~~-~~~~----~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 257 (408)
++++.+..+..+...+.+. . .....+ .+ .+. .+.. .+...+..++....|+|.|.+......+|+||
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~kn 245 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIEN 245 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCC
Confidence 5555443333222221111 1 110101 00 000 0000 01113444555677999999999999999999
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHH
Q 015346 258 KT-KFTKALITCFALCVLIYGGVAVM 282 (408)
Q Consensus 258 p~-~~~~~~~~~~~~~~~~Y~~~g~~ 282 (408)
|+ +.||++..+..+..++|.+..+.
T Consensus 246 P~r~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 246 PEVVGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 97 79999999988777655544443
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.47 E-value=3.6e-10 Score=112.56 Aligned_cols=239 Identities=14% Similarity=0.140 Sum_probs=137.3
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCC-CCChHHHHHHhcccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC-CYTASLMRYCFESKEG-ITTYPDIGEAAFGKY 120 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~-~~~~~~l~~~~~~~~~-~~~y~~l~~~~~G~~ 120 (408)
+||.|.++.+...+++++|.+ .+|.++...|..+++..++.+++. ...+..+.|...+.|. +..-....++++||+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~ 83 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPK 83 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCch
Confidence 567999999999999999976 679888888887666666655553 4455677787766775 577778899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH-hhhhhhhccCCC-CCCCCCcccCchhHHHHHHHHH--HHhhhcccCCchhHHHHHH
Q 015346 121 GRLLISVLLYTELYSYCVEFIIL-EGDNLTSLFPGA-SLDWPGFQLDSTHLFGILTALI--VLPTIWLRDLRVISYLSAT 196 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~~ 196 (408)
.+++..+..+............. ........+... ...++....+......++..+. ++-....++.+..++++.+
T Consensus 84 ~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~ 163 (496)
T PRK15238 84 FAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSI 163 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 88876655443332221111000 000000111110 0000000111111221222222 2334556677777777765
Q ss_pred HHHHHHHH----H-hhhheecccccc---ccC-----C--CCccccccchhhhHHHHhhhcccceehhhHHhhccchh-h
Q 015346 197 GVVATILI----V-LCVLFLGTIEGI---GFH-----P--TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (408)
Q Consensus 197 ~~~~~~~~----~-~~~~~~~~~~~~---~~~-----~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 260 (408)
+....+.. + +.........+. +.+ . .+...+..++..++....|+|.|.+.+....+|+|||+ +
T Consensus 164 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~ 243 (496)
T PRK15238 164 GGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKN 243 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcc
Confidence 43322211 1 111111000100 000 0 01111112466677788999999999999999999997 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015346 261 FTKALITCFALCVLIYGGVAVMG 283 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~Y~~~g~~g 283 (408)
.||++..+...+.++|.+..+..
T Consensus 244 ~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 244 FPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865543
No 48
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.47 E-value=3.5e-12 Score=125.72 Aligned_cols=355 Identities=10% Similarity=0.069 Sum_probs=218.0
Q ss_pred ccCCCCCCHHHHHHHHHHHhhccccch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CChHHHHHHh
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGI-TTYPDIGEAA 116 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~-LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~y~~l~~~~ 116 (408)
.+.+|+++.++....-++++||+|++- .+.+.++.|.. -++..++.+.....++..+.|.+.+.|.. .++...+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 466788999999999999999999965 67888888888 56777788899999999999998877874 6777779999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCc--ccCc-hhHHHHHHHHHHHhhhccc---CCchh
Q 015346 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGF--QLDS-THLFGILTALIVLPTIWLR---DLRVI 190 (408)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~--~~~~-~~~~~~i~~~~~~pl~~~~---~l~~l 190 (408)
.|+.+++.+.+.+++.....+.......+.+++.+.. ....... ..+. -++...+..++++-+.-.+ +.+..
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 9999999999999999999999999999999999860 0000000 0000 1122222223333333232 33333
Q ss_pred HHHHHHHHHHHHHHHhhhheec-ccccc-cc------CCCC--ccccccchhhhHHHHhhhcccceehhhHHhhccchh-
Q 015346 191 SYLSATGVVATILIVLCVLFLG-TIEGI-GF------HPTG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT- 259 (408)
Q Consensus 191 ~~~s~~~~~~~~~~~~~~~~~~-~~~~~-~~------~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~- 259 (408)
...+-+-.+..+++..+++..+ ...+. ++ ++++ .+..+.++..++....|+|.|.+.+....+|-|||+
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k 263 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK 263 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc
Confidence 3222222222222222222222 22221 11 1111 123367899999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCC-chhhh--------hcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhh
Q 015346 260 KFTKALITCFALCVLIYGGVAVMGFLM--FGQG-TLSQI--------TLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~--fg~~-~~~~i--------l~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~ 328 (408)
..|+++..++..++++|++..+.-=+. |.+. ..++. -.+...-.....+.....++.+..+-...+++.
T Consensus 264 ~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~ 343 (554)
T KOG1286|consen 264 AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAG 343 (554)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHh
Confidence 799999999999999999887653322 2110 11110 011111111112445555555555555566666
Q ss_pred HHHHHhH-----cCCC--CCcchhHHHHHHHHHHHHHHHHHHHcCc-----hhHHHHHHhHHHHHHHHHHhhHHHHHHHh
Q 015346 329 ARSIEEL-----LPAG--ISNNYWCFILLRTALVFSSVCAAFLLPF-----FSLVMALIGSLLSILVAIIMPSLCFIKIL 396 (408)
Q Consensus 329 ~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~p~-----~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~ 396 (408)
-+.+... .|+- +.+++.+-+....+..+...++++.... ++.++++.| .++.+++.+=++.|++.|
T Consensus 344 sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~s--i~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 344 SRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSS--IGTLFAWTLVALSHLRFR 421 (554)
T ss_pred HHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHh--HHHHHHHHHHHHHHeeee
Confidence 6655443 2221 1112222222223333334444444332 477777765 367777777788888766
Q ss_pred CC
Q 015346 397 GR 398 (408)
Q Consensus 397 ~~ 398 (408)
+.
T Consensus 422 ~a 423 (554)
T KOG1286|consen 422 YA 423 (554)
T ss_pred ec
Confidence 53
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.45 E-value=5.3e-10 Score=110.80 Aligned_cols=239 Identities=13% Similarity=0.105 Sum_probs=131.7
Q ss_pred CCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCChHHHHHHhccccch
Q 015346 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC-CYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (408)
||++.+..+...+.++++. -.+|.+ ++.|...++.+++.+++. .-.+....|...+.|+.......+++.+|++++
T Consensus 1 ~~~~~~~l~~~~~~~v~~~--~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSL--RGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred CcccHHHHHHHHHHHHHHh--hcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 3577777777777777664 456755 678876666666655544 346667777776667666677779999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHH--HHHhhhcccCCchhHHHHHHHHHH
Q 015346 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTAL--IVLPTIWLRDLRVISYLSATGVVA 200 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~pl~~~~~l~~l~~~s~~~~~~ 200 (408)
+...+..+.........-....+..+....+..... +. ..........+..+ ..+-+...++.+..++++.+....
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~ 155 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-ES-LAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIV 155 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-cc-cccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 998887777653322221111122111111110000 00 00112221122222 223334566777766666543211
Q ss_pred -HHH---HHhhhheeccccccc--cCC-----CCccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHH
Q 015346 201 -TIL---IVLCVLFLGTIEGIG--FHP-----TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (408)
Q Consensus 201 -~~~---~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~ 268 (408)
.++ .++++.+.....+.+ .+. .+...++.....+ ..+.|+|.|.+.+....+|+|||+ +.||++..+
T Consensus 156 ~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~ 234 (474)
T TIGR03813 156 GTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIA 234 (474)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchhHHHHHH
Confidence 111 111111110001111 000 0111122333322 345789999999999999999997 799999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 015346 269 FALCVLIYGGVAVMGFLMFG 288 (408)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg 288 (408)
..++.++|++..+.-....+
T Consensus 235 ~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 235 ALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 99999999987665444443
No 50
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.43 E-value=1.4e-10 Score=111.00 Aligned_cols=344 Identities=12% Similarity=0.088 Sum_probs=220.8
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLL-STPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil-~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
+.+|+...++.....+++.||+|.+ +...+.+++|.. .++..++.+.+.+..+..+.|.+...|...+|...+.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 4678899999999999999999994 688999999999 67788899999999999999998878877789999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhh--hcccCCchhHHHHHH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPT--IWLRDLRVISYLSAT 196 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl--~~~~~l~~l~~~s~~ 196 (408)
+-.++.+.+.+++.....+...++..+..++.+.+..- +...|..++.++++.+ .-.|......++-..
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v---------~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTV---------PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCC---------ChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 99999999999999999999999999998888875421 1234444444444443 334555544443322
Q ss_pred HHHHHHHHHh---hhheeccccccc------cC-CCCccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHH
Q 015346 197 GVVATILIVL---CVLFLGTIEGIG------FH-PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (408)
Q Consensus 197 ~~~~~~~~~~---~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (408)
--+..++.++ +++..+...+.. ++ +.....++.++...+-...|+|+|-+.+--...|-+||+ .+||++
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 2221111111 112222222110 11 112233466788888889999999999999999999997 699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhh----------------cCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 015346 266 ITCFALCVLIYGGVAVMGFLMFGQGTLSQIT----------------LNMPPHAFASKVAVWTTVINPFTKYALLMNPLA 329 (408)
Q Consensus 266 ~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il----------------~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~ 329 (408)
.-...-+.++|++.-++--..-. -.+++++ +|.. -.....+.+...+++++.+-.-.++..-
T Consensus 272 k~vfwRIl~FYi~si~~ig~lvP-y~dp~Ll~~~~~~~~~SPFvia~~~~G-i~~~~~imNaVIL~svlSa~NS~lYasS 349 (541)
T COG0833 272 KQVFWRILLFYILSIFVIGLLVP-YNDPRLLGNSSSGVAASPFVIAIKNAG-IPVAASIMNAVILTSVLSAANSGLYASS 349 (541)
T ss_pred HHHHHHHHHHHHHHHHHheEEcc-CCCcccccCCcCCccCCChhHhHHhcC-CccchHHHHHHHHHHHHHHhhccchHHH
Confidence 99999999998865443222111 1112222 1111 1134455566666666655555566666
Q ss_pred HHHHhHcCCC---------CCcch-hHHHHHHHHHHHHHHHHHHHcC--chhHHHHHHhHHHHHHHHHHhhHHHHHHHhC
Q 015346 330 RSIEELLPAG---------ISNNY-WCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILVAIIMPSLCFIKILG 397 (408)
Q Consensus 330 ~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~la~~~p--~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~ 397 (408)
+.+..+-.+. +++.+ ...++++.++-+++++-+.... -+.-++++.|.. ..++.+-=++.|++.||
T Consensus 350 R~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~ 427 (541)
T COG0833 350 RMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 6554443221 12222 2334444444444444444422 355566665533 34444555678887665
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.35 E-value=3.2e-09 Score=105.67 Aligned_cols=231 Identities=13% Similarity=0.068 Sum_probs=126.4
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHH-HHHHHHHHHHhhhhCC-CCCChHHHHHHhcccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVV-CCYTASLMRYCFESKE-GITTYPDIGEAAFGKY 120 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~-~~~~~~~l~~~~~~~~-~~~~y~~l~~~~~G~~ 120 (408)
.+|.|.++.+...+.++.+ +..+| .++..|+-.+..+++.+++ ..-.+..+.|.....+ ++......+++++|++
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~ 79 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER 79 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc
Confidence 4568999888888887764 56888 5778886555554444443 3445666777765433 4445555599999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHH-HHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGI-LTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
++++..+.+++................+...... +....+......+ +..+..+.+...++.+..++++.++.+
T Consensus 80 ~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~ 154 (507)
T TIGR00910 80 FGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF-----PALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFF 154 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----chhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9988877777655432222211111111212111 0011111111111 112222333455566666666554332
Q ss_pred HHHHH-Hhhhh---eeccccccc----cCCCCcccccc--chhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHH
Q 015346 200 ATILI-VLCVL---FLGTIEGIG----FHPTGQVVKWS--GMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (408)
Q Consensus 200 ~~~~~-~~~~~---~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~ 268 (408)
..... .++++ ......+.+ .+......++. +....+....|+|.|.+......+|+|||+ ++||++..+
T Consensus 155 ~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~ 234 (507)
T TIGR00910 155 AGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILL 234 (507)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHH
Confidence 21111 11111 111111111 11011111121 233344456899999999999999999997 799999999
Q ss_pred HHHHHHHHHHHHH
Q 015346 269 FALCVLIYGGVAV 281 (408)
Q Consensus 269 ~~~~~~~Y~~~g~ 281 (408)
..++.++|.+..+
T Consensus 235 ~i~~~~l~~l~~~ 247 (507)
T TIGR00910 235 MIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986544
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.22 E-value=4.4e-11 Score=118.72 Aligned_cols=231 Identities=13% Similarity=0.127 Sum_probs=151.1
Q ss_pred HHHHHhhccccch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhHHHHHHHH
Q 015346 54 NGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYT 131 (408)
Q Consensus 54 ~l~~~~iG~Gil~-LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~ 131 (408)
..+++++|+|++. .+.+..+.|.. ..+..++.+++...++..+.+..++.+...++...+++.+|+..+..+.+..++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 3467889999865 77888999987 677788888999999999999988888888888999999999999999998887
Q ss_pred HHHHHHHHHHHHhhhhhhhc--cCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhhh
Q 015346 132 ELYSYCVEFIILEGDNLTSL--FPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVL 209 (408)
Q Consensus 132 ~~~~~~~~y~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 209 (408)
.............+..++.. .++... .+.+.. .+..+..+++.. ....+.+..++....-....+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~i~~~~~~~-l~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPS---TWVWGI--LIAIIFILLITL-LNLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccccccccc---cccccc--hhhhhhhhhhhh-hhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 77777777666666655554 222110 111101 112222222222 2222444444333222222221111111
Q ss_pred eec----ccc-ccccC------------CC-----CccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHH
Q 015346 210 FLG----TIE-GIGFH------------PT-----GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALI 266 (408)
Q Consensus 210 ~~~----~~~-~~~~~------------~~-----~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~ 266 (408)
..+ ... ++... .+ +...++.++..++...+++|.|.+......+|.|||+ ++||++.
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 111 111 11100 00 1122356789999999999999999999999999998 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 015346 267 TCFALCVLIYGGVAVMGFLMFGQG 290 (408)
Q Consensus 267 ~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (408)
.++..+.++|++.....-...+.+
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCcc
Confidence 999999999998777655555543
No 53
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.06 E-value=3.4e-07 Score=82.55 Aligned_cols=225 Identities=16% Similarity=0.152 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhhccccch---hHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhHH
Q 015346 49 TQTIFNGINVMAGVGLLS---TPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLI 125 (408)
Q Consensus 49 ~~~~~~l~~~~iG~Gil~---LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 125 (408)
.+..+..+++++|+|.=+ +=.-|..=|+-|+.-.++.+++-..++....+... +....+|.|..++.+||+...+.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~-~f~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGK-KFNATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhcccchHHHHHHHhhHHHHHHH
Confidence 455677788999999654 22344566666777777778887788887777765 77889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHH-HHHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Q 015346 126 SVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFG-ILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (408)
Q Consensus 126 ~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 204 (408)
|+.+.++.++.+++-+...++.+.+.+.- ..|+. ++...++..+-++++.+.+-.++.+-.-..+..
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~e~~~l------------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~ 152 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLEEMFGL------------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIII 152 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHhCc------------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHH
Confidence 99999999999999888888788777642 13333 444444555555665666554443322222222
Q ss_pred HhhhheeccccccccCCCC---ccccccchhhhHHHHhhhcc-cceehhhHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 015346 205 VLCVLFLGTIEGIGFHPTG---QVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVA 280 (408)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g 280 (408)
...+.........++..+. ...+|... +.+-..+... ++..+.++-++|++++...+....+-.+.+++.....
T Consensus 153 l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~--~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~n 230 (349)
T COG3949 153 LVLVTLSFQFTNLGNAAQIVLTKQGNWKAS--AVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLIN 230 (349)
T ss_pred HHHHHHHHHHhhccchhhhcCCcCCChHHH--HHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHHH
Confidence 1111111111111111111 11222211 1111112222 3445667779999998766666665555555555444
Q ss_pred HHHHHHhc
Q 015346 281 VMGFLMFG 288 (408)
Q Consensus 281 ~~gy~~fg 288 (408)
..-...++
T Consensus 231 lsLi~~~~ 238 (349)
T COG3949 231 LSLIALYD 238 (349)
T ss_pred HHHHhhcc
Confidence 44333343
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.02 E-value=2.2e-07 Score=89.28 Aligned_cols=252 Identities=10% Similarity=0.060 Sum_probs=136.6
Q ss_pred hhhccCCccCCCCCCHHHHHHHHHHHhhc--ccc-chhHHHHHhhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCC
Q 015346 33 HKQLTGELPIAHGCSFTQTIFNGINVMAG--VGL-LSTPYTVKEAGWAS-LVVLLLFAVVCCYTASLMRYCFESKEGITT 108 (408)
Q Consensus 33 ~~~~~~~~~~~~~~s~~~~~~~l~~~~iG--~Gi-l~LP~a~~~~G~~g-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 108 (408)
.++..-+++.+|..|.++.+..-.+ ..| .|+ -++.+....+|..+ .-.+++.+.++...+.-|.|.+...|....
T Consensus 37 L~~lgYkqef~R~fs~~s~fg~sFs-~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg 115 (550)
T KOG1289|consen 37 LAELGYKQELKREFSLFSIFGISFS-LMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG 115 (550)
T ss_pred HHHcCCchhhhhhhhHHHHHHHHHH-HhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc
Confidence 3444455666677776655544333 222 123 34666677677663 334667778888888899998887887766
Q ss_pred hHHHHHHhccccchhHHHHHH-HHHHHHHHHHHHH---HhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhh--
Q 015346 109 YPDIGEAAFGKYGRLLISVLL-YTELYSYCVEFII---LEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTI-- 182 (408)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~-~~~~~~~~~~y~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~-- 182 (408)
..--+.+.-+|+.+.++.+.. +...++....... ..++.+.....-.. +++...+.+.+ .+...+.+..+
T Consensus 116 Ly~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n---p~y~~~~~~~~-~v~~ai~~v~~ll 191 (550)
T KOG1289|consen 116 LYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN---PNYEPTNYHQF-GVFEAILFVHGLL 191 (550)
T ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC---CCCcccceEee-hHHHHHHHHHHHH
Confidence 655555555666554444432 2333232222211 22222222222112 22222222222 22223333332
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhhhheecc---ccccccCCC-------Cccccc----cchhhhHHHHhhhcccceeh
Q 015346 183 WLRDLRVISYLSATGVVATILIVLCVLFLGT---IEGIGFHPT-------GQVVKW----SGMPFAIGIYGFCYSGHSVF 248 (408)
Q Consensus 183 ~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~----~~~~~~~~~~~faf~~~~~i 248 (408)
....-+.+++++.+++...++.+++.++... ..+.+.+.. ....+| ..+..++-.-.+++.|...-
T Consensus 192 n~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~ 271 (550)
T KOG1289|consen 192 NSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAA 271 (550)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCch
Confidence 2234466777777666655544333332211 111111211 111222 23455666678899999999
Q ss_pred hhHHhhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015346 249 PNIYQSMADKT-KFTKALITCFALCVLIYGGVAVMGFLMFGQ 289 (408)
Q Consensus 249 ~~i~~~m~~p~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 289 (408)
.++.+|.||++ +.||.+..+..+..++=..+-+.-..+.++
T Consensus 272 ~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 272 AHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred HHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999997 789998888888888766665555555654
No 55
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.01 E-value=7.3e-09 Score=86.20 Aligned_cols=213 Identities=17% Similarity=0.210 Sum_probs=143.0
Q ss_pred CCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh------------hCC--C-C---
Q 015346 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE------------SKE--G-I--- 106 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~------------~~~--~-~--- 106 (408)
-|-.-......|-++|+|.|++|.+|+..||+ ++.++.+.+.+++.+....+++.. ++. + .
T Consensus 12 ysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~s 91 (319)
T KOG3832|consen 12 YSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDES 91 (319)
T ss_pred hhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccc
Confidence 35556777889999999999999999999999 999999999999998887776531 010 0 0
Q ss_pred --------------------------------------CChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015346 107 --------------------------------------TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNL 148 (408)
Q Consensus 107 --------------------------------------~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l 148 (408)
...++++...|.|.+-.+..+.+.++.+|-...|...+--..
T Consensus 92 tasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 92 TASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred ccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 123588888899999888899999999999999988776666
Q ss_pred hhccCCCCCCC-------CC-------cc--cC----chhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhh
Q 015346 149 TSLFPGASLDW-------PG-------FQ--LD----STHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCV 208 (408)
Q Consensus 149 ~~~~~~~~~~~-------~~-------~~--~~----~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~ 208 (408)
.++........ +. |. +. .+.+..+...++.+|+.+. ++++.++++++..+.-..-.+..
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccch
Confidence 66543321110 11 10 00 1223334444455576665 77777888887776655433322
Q ss_pred heecc--ccccccCCCCccccccchhhhHHHHhhhcccceehhhHHhhccchh
Q 015346 209 LFLGT--IEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT 259 (408)
Q Consensus 209 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 259 (408)
+..+. .........++...+-++-..++...|+|.+|.+.|.....++.+.
T Consensus 251 ~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 251 ISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 22221 1111122233334455777888999999999999999988887543
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.84 E-value=3.7e-06 Score=82.58 Aligned_cols=338 Identities=14% Similarity=0.069 Sum_probs=172.2
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKE--AGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~--~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
+|+.++++-+..-.+..+...-+.+...... .++. ++...++-.++...-+........ + ...++..+.|..||.
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~-r-~Gl~~~v~sR~~FG~ 88 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA-K-YGLPFPVLSRASFGI 88 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-H-hCCCcchhhhhhhhh
Confidence 3445777776666666666555555544333 3344 444444433333333333333222 2 224567789999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCC--CcccC-chhHHHHHHHHHHHhhhcccCCchhHHHHHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWP--GFQLD-STHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 196 (408)
+|..+..++..+...+-...-....++.+.+.++...+... ..+.+ ......++...+..++......+..++....
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~ 168 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWL 168 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999888888888888888888777776654332110 00000 1222334444555554445444544444544
Q ss_pred HHHHHHHHHhhhheeccccc-c-ccC-CC---CccccccchhhhHHHHhhhcc-cceehhhHHhhccchhhHHHHHHHHH
Q 015346 197 GVVATILIVLCVLFLGTIEG-I-GFH-PT---GQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCF 269 (408)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~-~-~~~-~~---~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~~~ 269 (408)
+.......+...++.....+ . +.. .. ........+..++....-.+. .-.+.++..+.+|++++-.+....+.
T Consensus 169 a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~~~ 248 (442)
T TIGR00800 169 AVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFLAL 248 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHHHH
Confidence 44433332222222211111 1 100 11 112223455566655443333 44588999999999887667677788
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCchh--hhhcCCCCchHHHHHHH------HHHHH-hhhhhhhhhhhhhHHHHHhHc
Q 015346 270 ALCVLIYGGVAVMGFLM----FGQGTLS--QITLNMPPHAFASKVAV------WTTVI-NPFTKYALLMNPLARSIEELL 336 (408)
Q Consensus 270 ~~~~~~Y~~~g~~gy~~----fg~~~~~--~il~~~~~~~~~~~v~~------~~~~~-~~~~~~p~~~~~~~~~~~~~~ 336 (408)
.........+|..+-.. +|+...+ +....+... ....... ++..+ ....+.....++....+...+
T Consensus 249 ~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~-~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~ 327 (442)
T TIGR00800 249 PGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGL-TYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALL 327 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhccc-chhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhC
Confidence 88888878887777665 7654322 233333221 1111111 12212 222355566677777777777
Q ss_pred CCCCCcchhHHHHHHHHHHHH--HHHHHHHcCchhHHHHHHhHHHHHHHHH
Q 015346 337 PAGISNNYWCFILLRTALVFS--SVCAAFLLPFFSLVMALIGSLLSILVAI 385 (408)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~--~~~la~~~p~~~~~~~l~Ga~~~~~~~~ 385 (408)
++..+.++ ...+..++... ...+.-+.+.+.+++++.|...+...+.
T Consensus 328 ~~~~~~~r--~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI 376 (442)
T TIGR00800 328 PKYIKIKR--GSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGV 376 (442)
T ss_pred cCccccch--HHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 65432222 11111111111 1111111225566777777765555543
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.77 E-value=1.7e-05 Score=75.83 Aligned_cols=254 Identities=15% Similarity=0.095 Sum_probs=156.2
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchh
Q 015346 111 DIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (408)
Q Consensus 111 ~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 190 (408)
.+++..||.+|.++..+.+.+.+.|-.....+..++..... ++ -+.+++.++..+++...+.. ..+.+
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~----------~~~~~~ili~g~l~~l~~if-G~r~l 152 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TG----------LPVWAGILIIGVLMTLVTIF-GYRAL 152 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CC----------CcHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 45799999999999999999999999888888888762211 11 12344455555555444444 44444
Q ss_pred HHHHHHHHHHHHHHHhhhheeccc--cccccCCCCccccccchhhhHHHHhhhcccc-eehhhHHhhccchh--hHHHHH
Q 015346 191 SYLSATGVVATILIVLCVLFLGTI--EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGH-SVFPNIYQSMADKT--KFTKAL 265 (408)
Q Consensus 191 ~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~-~~i~~i~~~m~~p~--~~~~~~ 265 (408)
..++..+.......+....+.... ...+......+.++.++..+++...-.+... +...+..+.+|+|+ |.-...
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~ 232 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAA 232 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHH
Confidence 444444444433333333322222 1222222233556667777777665555544 46788888888888 777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCcch
Q 015346 266 ITCFALCVLIYGGVAVMGFLMFGQGT-LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNY 344 (408)
Q Consensus 266 ~~~~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 344 (408)
..+......+-++.|...-.+-|+.. ..+....+.. ....+.+...+..+.+--..+++.--.+....++- ++
T Consensus 233 ~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l---~k 306 (442)
T COG1457 233 VLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKL---SK 306 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh---hh
Confidence 88888888888999999998888766 4444444432 33445566667777777788888777777776542 23
Q ss_pred hHHHHHHHHHHHHHHHHHHH----cCchhHHHHHHhHHHHHHHH
Q 015346 345 WCFILLRTALVFSSVCAAFL----LPFFSLVMALIGSLLSILVA 384 (408)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~----~p~~~~~~~l~Ga~~~~~~~ 384 (408)
..+.....+. ..+++|+. ...++.++.++|+.......
T Consensus 307 ~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~ 348 (442)
T COG1457 307 VTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGG 348 (442)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332 33333333 45788888888777444444
No 58
>PRK11375 allantoin permease; Provisional
Probab=98.65 E-value=6.2e-05 Score=74.50 Aligned_cols=277 Identities=15% Similarity=0.115 Sum_probs=134.7
Q ss_pred CCChHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhcc----CCCC---CCCCCcccCch-hHHHHHHHH
Q 015346 106 ITTYPDIGEAAFGKYGRLLISVLLY-TELYSYCVEFIILEGDNLTSLF----PGAS---LDWPGFQLDST-HLFGILTAL 176 (408)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~l~~~~----~~~~---~~~~~~~~~~~-~~~~~i~~~ 176 (408)
..++.-+.|..||.+|..+..+... +..++=...-....++.+..++ +.+. .+.+....+.. ....++..+
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 3578889999999999887776653 3433433334444455544333 2211 00000111111 222334445
Q ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHhhhheecc-ccccc--cCCCC--c---cccccchhhhHHHHhhhcc-ccee
Q 015346 177 IVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGT-IEGIG--FHPTG--Q---VVKWSGMPFAIGIYGFCYS-GHSV 247 (408)
Q Consensus 177 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~--~---~~~~~~~~~~~~~~~faf~-~~~~ 247 (408)
+..++.. ...+.++++..++........+...+... ..+.. .+..+ . ......+..++...+-++. ...+
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~ 246 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVS 246 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 5555543 46666666666555544332222221111 11111 00001 0 0012234445544444555 4458
Q ss_pred hhhHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCc--hhhhhcCCCCchHHHHHHHHHHHHhhhhhh
Q 015346 248 FPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMG----FLMFGQGT--LSQITLNMPPHAFASKVAVWTTVINPFTKY 321 (408)
Q Consensus 248 i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~g----y~~fg~~~--~~~il~~~~~~~~~~~v~~~~~~~~~~~~~ 321 (408)
.++..|..|++++..+...++..+...+...+|+.. ...+|+.. ..+++.... +......+.+...++.+.+-
T Consensus 247 ~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~-~~~~~~~a~l~~v~a~~~tN 325 (484)
T PRK11375 247 ASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWD-SLFASFFAVLVILMTTISTN 325 (484)
T ss_pred ccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhc-chHHHHHHHHHHHHHHHHHH
Confidence 999999999998777777777777766665555443 34555432 223333332 12333334444445555553
Q ss_pred -hhhhhhhHHHHHhHcCCCCCcchhHHHHHH--HHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHH
Q 015346 322 -ALLMNPLARSIEELLPAGISNNYWCFILLR--TALVFSSVCAAFLLPFFSLVMALIGSLLSILVAII 386 (408)
Q Consensus 322 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~i 386 (408)
.-..++.-..+...+|+.. ++++-..+. +..+..++.+-.....+..++++.|++.+......
T Consensus 326 ~~~N~ys~~~~l~~l~pk~i--~~~~~~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 326 ATGNIIPAGYQIAALAPTKL--TYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred HHhhcccHHHHHHHhCcCcc--chhhHHHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888887542 122211111 11111111111111237788888888866655533
No 59
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.59 E-value=0.00012 Score=71.33 Aligned_cols=148 Identities=17% Similarity=0.063 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc-c
Q 015346 43 AHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK-Y 120 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~-~ 120 (408)
.|+.+++...+.+..+.+|++. ++.|......|+.+....+..........+.+.+..+ +.+..|..|..++-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFI-NNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCchhHHHHHHhCchH
Confidence 4678899999999998888755 6788777777865332222222223334444444433 56789999999999998 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHH
Q 015346 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 200 (408)
.+.+..+...+..+......+...+..+..+++- +.....++.++++........++...+...+-.+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-----------~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-----------DLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 6666667667777777777777778888776531 12334445555666667788999988888777655
Q ss_pred HH
Q 015346 201 TI 202 (408)
Q Consensus 201 ~~ 202 (408)
.+
T Consensus 150 ~~ 151 (407)
T TIGR00813 150 MI 151 (407)
T ss_pred HH
Confidence 43
No 60
>PRK12488 acetate permease; Provisional
Probab=98.56 E-value=0.00057 Score=68.93 Aligned_cols=151 Identities=14% Similarity=0.067 Sum_probs=99.4
Q ss_pred cCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc-
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG- 118 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G- 118 (408)
--.|+.+++...+.+..+.++++- ++.|......|+.+....+...+-.......+.+-.+ +.+..|.+|..++=||
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~lr-~~g~~T~~d~l~~Rf~s 142 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLR-NLGKYTFADVVSYRLAQ 142 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH-HCCCcchHHHHHHHcCC
Confidence 446789999999999999888865 6799877788876432222111111111223333333 5667899999999888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 198 (408)
|..+.+..+...+..+.....-+...+..++.+++- ......++..++....+....++...+...+-.
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi-----------~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI-----------SYLYAVVIVGALMVLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 567887777777766666666777777777766531 123344555566666777889999888887765
Q ss_pred HHHHH
Q 015346 199 VATIL 203 (408)
Q Consensus 199 ~~~~~ 203 (408)
+..+.
T Consensus 212 ~im~~ 216 (549)
T PRK12488 212 VLLLS 216 (549)
T ss_pred HHHHH
Confidence 54433
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.52 E-value=0.00056 Score=67.98 Aligned_cols=149 Identities=20% Similarity=0.171 Sum_probs=106.6
Q ss_pred ccCCCCCCHHHHHHHHHHHhhc-cccchhHHHHHhhcHH-HHHHH---HHHHHHHHHHHHHHHHhhhhCCCCCChHHHHH
Q 015346 40 LPIAHGCSFTQTIFNGINVMAG-VGLLSTPYTVKEAGWA-SLVVL---LLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG-~Gil~LP~a~~~~G~~-g~~~l---~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~ 114 (408)
...+|+.+.+-.......+..+ ...+++|-.....|+. ..... +.......+-...+.+.. +.++..|..|..+
T Consensus 34 ~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 34 FLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred hccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 4445677777777777777777 6778999999999976 22222 233444455555666665 5788999999999
Q ss_pred Hhcc-ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHH
Q 015346 115 AAFG-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYL 193 (408)
Q Consensus 115 ~~~G-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 193 (408)
+-|| |..+.+..+......+..+..-++..+..+...++ .+ .....++.+.++........++...+.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~----------~~~~~~~~~~~v~~Yt~~gG~~av~~T 181 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS----------YVTGILIGALIVALYTFLGGLRAVVWT 181 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC----------HHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 9999 88899999999999999999999999988866554 21 233334455666666777788888877
Q ss_pred HHHHHHH
Q 015346 194 SATGVVA 200 (408)
Q Consensus 194 s~~~~~~ 200 (408)
..+-...
T Consensus 182 d~iqg~i 188 (493)
T COG0591 182 DFIQGLI 188 (493)
T ss_pred HHHHHHH
Confidence 7655443
No 62
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.51 E-value=0.0015 Score=65.09 Aligned_cols=152 Identities=11% Similarity=-0.016 Sum_probs=94.2
Q ss_pred ccCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHH-HHH--HHHHH-HHHHHHHHHHHHhhhhCCCCCChHHHHH
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWAS-LVV--LLLFA-VVCCYTASLMRYCFESKEGITTYPDIGE 114 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g-~~~--l~~~~-~~~~~~~~~l~~~~~~~~~~~~y~~l~~ 114 (408)
-...|+.+++...+.+..+.+|++. ++.|....+.|+.. ... ....+ +...+-...+.+..+ +.+..|..|+.+
T Consensus 37 ~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~T~~e~l~ 115 (483)
T PRK09442 37 FLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILAR-KYNAVTLNDMLR 115 (483)
T ss_pred eeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccHHHHHH
Confidence 3446778999999999998888754 67886666667531 111 11111 111122233334433 668899999999
Q ss_pred Hhccccc-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHH
Q 015346 115 AAFGKYG-RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYL 193 (408)
Q Consensus 115 ~~~G~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 193 (408)
+-||++. +.+..+......+.....-+...+..++.+++ . +.....++..++++..+...+++...+.
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i----------~~~~~iii~~~iv~iYt~~GGl~av~~T 184 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-I----------SYETGLLIFGITVALYTAFGGFRAVVLT 184 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C----------CHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999764 55555555555555556666666777776653 1 1233445555666677788899998888
Q ss_pred HHHHHHHHHH
Q 015346 194 SATGVVATIL 203 (408)
Q Consensus 194 s~~~~~~~~~ 203 (408)
..+-.+..+.
T Consensus 185 D~iQ~~i~~~ 194 (483)
T PRK09442 185 DALQGIVMLV 194 (483)
T ss_pred HHHHHHHHHH
Confidence 8776554433
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.51 E-value=0.0013 Score=65.26 Aligned_cols=236 Identities=14% Similarity=0.014 Sum_probs=131.0
Q ss_pred CccCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHH-HHHHH--HHHHHH-HHHHHHHHHHhhhhCCCCCChHHHH
Q 015346 39 ELPIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWA-SLVVL--LLFAVV-CCYTASLMRYCFESKEGITTYPDIG 113 (408)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~-g~~~l--~~~~~~-~~~~~~~l~~~~~~~~~~~~y~~l~ 113 (408)
--...|+.+++.....+..+.+|++. ++.|-...+.|+. ..... ...+.+ ...-...+.+.. ++.+..|.+|+.
T Consensus 35 y~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~l 113 (471)
T TIGR02119 35 YFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIIS-RKYNAITINDVL 113 (471)
T ss_pred eeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHH
Confidence 34456789999999999999999865 5688777677753 11100 011111 111122233333 367889999999
Q ss_pred HHhccccc-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHH
Q 015346 114 EAAFGKYG-RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (408)
Q Consensus 114 ~~~~G~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 192 (408)
++-||++. +.+..+...+..++....-+...+..++.+++- +.....++..++++.......++...+
T Consensus 114 ~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GG~~av~~ 182 (471)
T TIGR02119 114 KARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-----------SYLTALFIFSSSVLIYTTFGGFRAVAL 182 (471)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999654 666777777777776666677677777776531 123344555566677778889999998
Q ss_pred HHHHHHHHHHHHHhhhheecccc--ccc------cCCCCc---ccccc-----chhhhH-HHHhhhcccceehhhHHhhc
Q 015346 193 LSATGVVATILIVLCVLFLGTIE--GIG------FHPTGQ---VVKWS-----GMPFAI-GIYGFCYSGHSVFPNIYQSM 255 (408)
Q Consensus 193 ~s~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~---~~~~~-----~~~~~~-~~~~faf~~~~~i~~i~~~m 255 (408)
...+-.+..+...+.+....... +.+ .+..+. +.+.. .+...+ -...++..+++....-.-..
T Consensus 183 td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aa 262 (471)
T TIGR02119 183 TDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSY 262 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhc
Confidence 88776655443322222111111 110 000000 01101 111111 11223333444333333445
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015346 256 ADKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (408)
Q Consensus 256 ~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 286 (408)
||+++.+|...++..+...++....+.|...
T Consensus 263 k~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 263 KDSKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred CCHHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 6777788887777766666666555555443
No 64
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.44 E-value=0.00035 Score=67.24 Aligned_cols=259 Identities=14% Similarity=0.083 Sum_probs=145.2
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC
Q 015346 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD 186 (408)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 186 (408)
.++.-+.|..||++|..+..+...+...+--..-....++.+..+.+..... +.......+..++..+.+. ..
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~~-~G 130 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWLL-SG 130 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHH-HH
Confidence 4688899999999999998888888887777777777788888776542111 1122233333444444443 36
Q ss_pred CchhHHHHHHHHHHHHHHHhhhheec-cccccccCCCCccccccchhhhHHHHhhh-cccceehhhHHhhccchhhHHHH
Q 015346 187 LRVISYLSATGVVATILIVLCVLFLG-TIEGIGFHPTGQVVKWSGMPFAIGIYGFC-YSGHSVFPNIYQSMADKTKFTKA 264 (408)
Q Consensus 187 l~~l~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~p~~~~~~ 264 (408)
.+.++++..+.........+...+.. ...+....... ..+ ..+..++....-. -......++..|..|+|+|.-+.
T Consensus 131 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~ 208 (386)
T TIGR02358 131 PLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNR-AGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLG 208 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCC-CCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehH
Confidence 66677777666555444333322211 11111111111 111 2333333332211 12233578999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCcch
Q 015346 265 LITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNY 344 (408)
Q Consensus 265 ~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 344 (408)
...+..+...+-..+|...-.+.++....++..... . .....++..++.+.+.....++.-..+...+++-+ +
T Consensus 209 ~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g---~-~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~---~ 281 (386)
T TIGR02358 209 TVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG---L-GIPALLIILLSTVTTTFMDIYSAAISTGNLLPRLK---V 281 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc---H-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---c
Confidence 888889999988989888777776543333332221 1 12233444455556667777777777777775332 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHc--CchhHHHHHHhHHHHHHHH
Q 015346 345 WCFILLRTALVFSSVCAAFLL--PFFSLVMALIGSLLSILVA 384 (408)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~~--p~~~~~~~l~Ga~~~~~~~ 384 (408)
+++... ...+.++++... ..+..++++.|...+....
T Consensus 282 ~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~g 320 (386)
T TIGR02358 282 KHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYA 320 (386)
T ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 122223333332 3677777777776555444
No 65
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.43 E-value=0.00029 Score=68.49 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=87.5
Q ss_pred CCCCCHHHHHHHHHHHhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (408)
.|+.+++...+.+..+.+|++ +++.|....+.|+.+....+............+.+-.+ +.+..|..|+.++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLR-RSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHH-HTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhc-ccchhhhhhhhhhhcCCch
Confidence 466899999999999999885 47789888888865322222222222333334444433 6778999999999999998
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Q 015346 122 --RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (408)
Q Consensus 122 --~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 199 (408)
+.+..+...+.........+...+..++..++- +.....++..++++.......++...+...+-.+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi-----------~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI-----------PYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccch-----------hhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 666555556666677777777777777776541 1334445556666667788888888877766655
Q ss_pred HHH
Q 015346 200 ATI 202 (408)
Q Consensus 200 ~~~ 202 (408)
..+
T Consensus 153 i~~ 155 (406)
T PF00474_consen 153 IMI 155 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 66
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.36 E-value=0.0031 Score=63.73 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=94.7
Q ss_pred cCCCCCCHHHHHHHHHHHhhcc-ccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc-
Q 015346 41 PIAHGCSFTQTIFNGINVMAGV-GLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG- 118 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~-Gil~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G- 118 (408)
--.|+.+++...+.+..+.+++ ..++.|-.....|+.+....+...+-.......+.+-.+ +.+..|..|..++=||
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lr-r~g~~T~~d~l~~Rf~s 142 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLR-NLGRYTFADVASYRLKQ 142 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccHHHHHHHHcCC
Confidence 3457788888888888887776 557899777777865433222111111122233444333 5567999999999887
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 198 (408)
|..+.+..+...+..+......+...+..++.+++- +.....++..+++...+....++...+...+-.
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-----------~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-----------NYHVAVVLVGILMVMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456776666666555565666666666666666531 123344556666666777889998888887765
Q ss_pred HHHH
Q 015346 199 VATI 202 (408)
Q Consensus 199 ~~~~ 202 (408)
+..+
T Consensus 212 ~im~ 215 (549)
T TIGR02711 212 VLLL 215 (549)
T ss_pred HHHH
Confidence 5443
No 67
>PRK09395 actP acetate permease; Provisional
Probab=98.30 E-value=0.0046 Score=62.54 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=95.5
Q ss_pred ccCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
-...|+.+++...+.+..+.++++- ++.|-.....|+.+........+........+.+-. |+.+..|+.|..++=||
T Consensus 65 ~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~-r~~g~~T~~d~l~~Ryg 143 (551)
T PRK09395 65 YTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERL-RNLGKYTFADVASYRLK 143 (551)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCccHHHHHHHHcC
Confidence 3446778999999999999888754 678977777887643222211111112222333333 35678999999999999
Q ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHH
Q 015346 119 K-YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (408)
Q Consensus 119 ~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 197 (408)
+ ..+.+..+...+..+.....-+...+..++.+++- +.....++..+++...+....++...+...+-
T Consensus 144 s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi-----------~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ 212 (551)
T PRK09395 144 QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL-----------NYHVAVVLVGVLMMVYVLFGGMLATTWVQIIK 212 (551)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4 57777766666555555555566666666666431 13344555666666677888999988888766
Q ss_pred HHHH
Q 015346 198 VVAT 201 (408)
Q Consensus 198 ~~~~ 201 (408)
.+..
T Consensus 213 ~iim 216 (551)
T PRK09395 213 AVLL 216 (551)
T ss_pred HHHH
Confidence 5443
No 68
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.29 E-value=0.0061 Score=61.72 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=96.2
Q ss_pred ccCCCCCCHHHHHHHHHHHhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
-...|+.+++...+.+..+.++++ .++.|......|+.+.................+.+-.+ +.+..|..|..++=||
T Consensus 28 ~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~r-r~~~~T~~e~l~~Rf~ 106 (552)
T TIGR03648 28 YVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLR-KFGKYTVPDFIGDRYY 106 (552)
T ss_pred eeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCccHHHHHHHHhC
Confidence 344678999999999999988775 47788777777765322221111111223344444444 5678899999999998
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHH
Q 015346 119 KY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (408)
Q Consensus 119 ~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 197 (408)
++ .+.+..+...+..+......+...+..++.+++- +.....++..++++..+....++...+...+-
T Consensus 107 s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-----------~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 107 SNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-----------DFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred CCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55 5766666666666666666666666666666531 12334445556666677778999988887766
Q ss_pred HHHH
Q 015346 198 VVAT 201 (408)
Q Consensus 198 ~~~~ 201 (408)
.+..
T Consensus 176 ~iim 179 (552)
T TIGR03648 176 YIVL 179 (552)
T ss_pred HHHH
Confidence 5443
No 69
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.21 E-value=0.0037 Score=59.53 Aligned_cols=311 Identities=16% Similarity=0.145 Sum_probs=142.6
Q ss_pred HHHHHHhhccccchhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhHHHHH
Q 015346 53 FNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVL 128 (408)
Q Consensus 53 ~~l~~~~iG~Gil~LP~a~-~~~G--~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~ 128 (408)
+.+..--+|+|.+-.|-.. .++| |. +.+.+++.++..-..... +.. +.+ .+|.++.++ +||+.+.+..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~-~~g-G~~~~l~~~-~g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALA-LVG-GGYDSLSAR-IGKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eee-ecC-CCHHHHHHH-hChHHHHHHHHH
Confidence 3567778999999999655 5666 45 666666666665555444 112 222 467666654 556555555444
Q ss_pred HHHHHH--H-----HHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhh---hcccCCchhHHHHHHHH
Q 015346 129 LYTELY--S-----YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPT---IWLRDLRVISYLSATGV 198 (408)
Q Consensus 129 ~~~~~~--~-----~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl---~~~~~l~~l~~~s~~~~ 198 (408)
+++... . ..++|-.. +..+++.- . . .....+..++.+.+ ...+.-|-..++..+-.
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~-------~--~-~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LT 141 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG----IAPLLHSP-------T--S-LLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLT 141 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH----HHhccCcc-------c--c-hHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHH
Confidence 443332 1 12223322 33333320 0 0 11112233333333 22333333344443333
Q ss_pred HHHHHHHhhhheeccccccccCCCC-ccccc-cchhhhHHHHhhhcc-------cceehhhHHh-hccchhh-HHHHHHH
Q 015346 199 VATILIVLCVLFLGTIEGIGFHPTG-QVVKW-SGMPFAIGIYGFCYS-------GHSVFPNIYQ-SMADKTK-FTKALIT 267 (408)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~faf~-------~~~~i~~i~~-~m~~p~~-~~~~~~~ 267 (408)
.......+.++..+..........+ ....- ..+.+++---.+++. |...+..+.+ ++|||+| .++....
T Consensus 142 P~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~ 221 (378)
T TIGR00796 142 PALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKA 221 (378)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3333333333333333222111111 11111 235555555566666 7777777777 9999974 4445555
Q ss_pred HH---HHHHHHHHHHHHHHHHHhc---CC-chhhhhcCCCC---chHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcC
Q 015346 268 CF---ALCVLIYGGVAVMGFLMFG---QG-TLSQITLNMPP---HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLP 337 (408)
Q Consensus 268 ~~---~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~~~~~---~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 337 (408)
+. .....+|...+..|...-+ +. ..+.++.+..+ ++.-..+..+...++.+++-.-....+.+.+.++.+
T Consensus 222 G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~ 301 (378)
T TIGR00796 222 GLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP 301 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 54 3333444444444432211 10 11222211110 112222333344444445555454556666666654
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHH
Q 015346 338 AGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKI 395 (408)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~ 395 (408)
+ .+.+ ..-....+.+++++.. .++.++++ ....+.++.|....+.+
T Consensus 302 k---~~y~---~~v~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 302 K---LSYK---TWVIVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred C---CCHH---HHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 2 1222 1222333344444443 77777774 46667777777544433
No 70
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.15 E-value=0.0043 Score=59.98 Aligned_cols=293 Identities=13% Similarity=0.124 Sum_probs=144.1
Q ss_pred CCChHHHHHHhccccchh---HHHHHHHHHHHHHHHHHHHHhhh-hhhhccCCCCCCCCCcccCchhHHHHHHHHH---H
Q 015346 106 ITTYPDIGEAAFGKYGRL---LISVLLYTELYSYCVEFIILEGD-NLTSLFPGASLDWPGFQLDSTHLFGILTALI---V 178 (408)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~---~~~~~~~~~~~~~~~~y~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~ 178 (408)
..+|+.+.+..||-+|.. +...+.-+.-+|.....--..-+ .+..+.+.......-.+.........+..++ +
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l 181 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVL 181 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHH
Confidence 458999999999987754 34445555555544322111111 1222333211100000010111122222222 2
Q ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHhhhheeccc-ccc---ccCCC-Ccc--cc-ccchhhhHHHHhhhcc-cceehh
Q 015346 179 LPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI-EGI---GFHPT-GQV--VK-WSGMPFAIGIYGFCYS-GHSVFP 249 (408)
Q Consensus 179 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~-~~~--~~-~~~~~~~~~~~~faf~-~~~~i~ 249 (408)
-.++..+.++.++++-..+-..+.+....+.+.... .+. ..+.+ ... .+ ...+...+...+-.|. ..-|+|
T Consensus 182 ~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~ 261 (497)
T COG1953 182 QLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIP 261 (497)
T ss_pred HHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 223455688888888777666555544444333222 221 11111 111 11 1233333333333332 345889
Q ss_pred hHHhhccchhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCC--chhhhhcCCCCchHHH-HHHHHHHHHhhhhhhh
Q 015346 250 NIYQSMADKTKFTKALITCFALCVLIYGGVAV----MGFLMFGQG--TLSQITLNMPPHAFAS-KVAVWTTVINPFTKYA 322 (408)
Q Consensus 250 ~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~----~gy~~fg~~--~~~~il~~~~~~~~~~-~v~~~~~~~~~~~~~p 322 (408)
+..|.-|+|+.-.+--.++.-+.+.+.-++|+ .++..||+. .+.++..++++..... .....+...++-+...
T Consensus 262 DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~ 341 (497)
T COG1953 262 DFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIA 341 (497)
T ss_pred hhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHH
Confidence 99999998875444445555555555555554 467789987 4567888887654444 2222233333344444
Q ss_pred hhhhhhHHHHHhHcCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCC
Q 015346 323 LLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKA 400 (408)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~ 400 (408)
-...+...-+..++|+.-..+|-..+...+.++.++.-+=..-..+...++..|++.+++....+ .=|+.+||+|.
T Consensus 342 aN~vsp~~D~s~l~Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi--aDyflirk~~~ 417 (497)
T COG1953 342 ANIVSPGYDLSALFPKYINIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI--ADYFLVRKGRL 417 (497)
T ss_pred hccCChHHHHHHhcccccchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcCcc
Confidence 45555555567777765322222222223333334443333344777777777777777666544 34455555554
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=98.15 E-value=0.0041 Score=60.31 Aligned_cols=256 Identities=14% Similarity=0.077 Sum_probs=124.8
Q ss_pred CCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhccc
Q 015346 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLR 185 (408)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 185 (408)
..++.-+.|..||.+|..+..+...+...+-...-....+..++...+. . . ....++..++..+....
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~-~---------~-~~~~~i~~~l~~~~~~~- 137 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL-D---------I-NLLIVLSGLLMTVTAYF- 137 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-C---------H-HHHHHHHHHHHHHHHHH-
Confidence 3578889999999999998877776666555555444555555554321 1 1 12333444444444433
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhheeccc--cccccCCCCccccccchhhhHHHHhhhccc-ceehhhHHhhccchhhHH
Q 015346 186 DLRVISYLSATGVVATILIVLCVLFLGTI--EGIGFHPTGQVVKWSGMPFAIGIYGFCYSG-HSVFPNIYQSMADKTKFT 262 (408)
Q Consensus 186 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~i~~i~~~m~~p~~~~ 262 (408)
..+.+++++..+........+...+.... .+.+........+...+..++....-.+.. -.+.++..|..|++++..
T Consensus 138 G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~ 217 (404)
T PRK11017 138 GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAV 217 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcccee
Confidence 23444444444433333222222211111 111100001111223555555554444443 458889999988887655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCc
Q 015346 263 KALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISN 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 342 (408)
.....+..+...+-..+|...-...|+....+... . .... ....+...+...++-....+..--...+....
T Consensus 218 ~~~~lg~~i~~~~~~~~G~~~a~~~~~~d~~~~~~--~-~~~~-~~~l~~~~l~~~t~n~~~~ys~~l~~~~l~~~---- 289 (404)
T PRK11017 218 LATMVAFFLGNSLMFIFGAAGAAVYGQADISDVMI--A-QGLL-IPAIVMLGLNIWTTNDNALYASGLGFCNITRL---- 289 (404)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH--H-hchH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC----
Confidence 66667777777777777776666666532222221 1 1111 12233333444444444444443444444311
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HcCchhHHHHHHhHHHHHHHH
Q 015346 343 NYWCFILLRTALVFSSVCAAF-LLPFFSLVMALIGSLLSILVA 384 (408)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~-~~p~~~~~~~l~Ga~~~~~~~ 384 (408)
+++ +. ..+...+.++++. ...++..++++.|...+....
T Consensus 290 ~~~-~~--~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P~~g 329 (404)
T PRK11017 290 SSR-TL--TVVNGIIGTVLALWLYNNFVGWLTLLGSAIPPVGG 329 (404)
T ss_pred cch-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 111 11 1122222223222 235677777777766555444
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.07 E-value=0.016 Score=57.79 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=88.6
Q ss_pred cCCCCCCHHHHHHHHHHHhhccc-cchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhh----hCCCCCChHHHHHH
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFE----SKEGITTYPDIGEA 115 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~G-il~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~y~~l~~~ 115 (408)
--.|+.+++...+.+..+.+++. .++.|......|+.+........+........+.+-.+ ++.+..|..|+.++
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 33577899999999988888765 46688777777875322111111111222223322211 15678899999999
Q ss_pred hccccchhH---HHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHH
Q 015346 116 AFGKYGRLL---ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (408)
Q Consensus 116 ~~G~~~~~~---~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 192 (408)
=||++.+.+ ..+...+........-+...+..++.+++- +.....++..++....+....++...+
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi-----------~~~~~iii~~~i~~~Yt~~GGl~av~~ 181 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL-----------DYKTGLLIGALIIVIYTFFGGFLAVSW 181 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------cHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999754433 333333333333444444555566655431 123344555666667778889999888
Q ss_pred HHHHHHHHHH
Q 015346 193 LSATGVVATI 202 (408)
Q Consensus 193 ~s~~~~~~~~ 202 (408)
...+-.+..+
T Consensus 182 TD~iQ~~i~~ 191 (487)
T TIGR02121 182 TDFVQGLLMF 191 (487)
T ss_pred HHHHHHHHHH
Confidence 8877655543
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.03 E-value=0.019 Score=57.41 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=91.0
Q ss_pred cCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHH----HHhhhhCCCCCChHHHHHH
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLLLFAVVCCYTASLM----RYCFESKEGITTYPDIGEA 115 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l----~~~~~~~~~~~~y~~l~~~ 115 (408)
-..|+.+++...+.+..+.+++.. ++.|....+.|+.+....+...+........+ ..-..++.+..|..|..++
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 446789999999999999998866 66898878888653211111111111111111 1122235678899999999
Q ss_pred hccccchh---HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHH
Q 015346 116 AFGKYGRL---LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (408)
Q Consensus 116 ~~G~~~~~---~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 192 (408)
=||++.+. +..+...+.....+..-+...+..+..+++- +.....++...+++..+....++...+
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GGl~aV~~ 185 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM-----------SYETALWAGAAATILYTFIGGFLAVSW 185 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99975443 3344444444444444444555666655431 123345556667777788889999998
Q ss_pred HHHHHHHHHH
Q 015346 193 LSATGVVATI 202 (408)
Q Consensus 193 ~s~~~~~~~~ 202 (408)
...+-.+..+
T Consensus 186 TD~iQ~~imi 195 (502)
T PRK15419 186 TDTVQASLMI 195 (502)
T ss_pred HHHHHHHHHH
Confidence 8877765443
No 74
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.02 E-value=0.014 Score=56.26 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHhhccc-cchhHHHHHhhcHHHHHHHH---HHHHHHHHHHHHHHHhhhhCCCCCCh-----HHHHH
Q 015346 44 HGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLL---LFAVVCCYTASLMRYCFESKEGITTY-----PDIGE 114 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~G-il~LP~a~~~~G~~g~~~l~---~~~~~~~~~~~~l~~~~~~~~~~~~y-----~~l~~ 114 (408)
++.|.+|+......+.+|+| |+++|.+....|.-+++.+- +.+..+.|.-..+..-.++++++.+| ..+-+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 44999999999999999998 99999998777743533222 33444444444444433334444447 78888
Q ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHH
Q 015346 115 AAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLS 194 (408)
Q Consensus 115 ~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 194 (408)
...|||.+.+..+....++...+.......++.+++.++ . ..+...+...++........++.+.+++
T Consensus 125 gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~~----------~--~~~v~~i~l~~l~~~vi~GGik~Ia~v~ 192 (425)
T TIGR00835 125 GLGMRWLAVLFAVFLIASFGIGNMVQANAIASALSNAFN----------V--PKLVTGIVLTVLTALIIFGGLKRIAKIS 192 (425)
T ss_pred HhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcC----------C--cHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 888888666666552222222233333344444443221 1 1233233333333444556888888888
Q ss_pred HHHHHHHH
Q 015346 195 ATGVVATI 202 (408)
Q Consensus 195 ~~~~~~~~ 202 (408)
...+....
T Consensus 193 ~~lvP~m~ 200 (425)
T TIGR00835 193 SVVVPFMA 200 (425)
T ss_pred HHHHHHHH
Confidence 76555433
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.01 E-value=0.00018 Score=70.71 Aligned_cols=338 Identities=13% Similarity=0.059 Sum_probs=153.3
Q ss_pred CCCCCHHHHHHHHHHHhhccccchhHHHHHhh--cHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEA--GWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~--G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
+|+.+.++.+..-.+..+....+.+....... ++- ++...++..++...-......... +. ..+...+.|..||.
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~-Gl~~~v~sR~~FG~ 83 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RT-GLPTMVLSRASFGY 83 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC----HHHHTTTTS-T
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-cc-CCCchhcchhccCc
Confidence 34457777777777777777666666554333 344 555555444443333333333322 22 34677889999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCC---CC----CcccCchhHHHHHHHHHHHhhhcccCCchhHH
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLD---WP----GFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~---~~----~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 192 (408)
+|..+..+...+...|-........++.+...++..... .+ ... .......++..++..+ ......+.+++
T Consensus 84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~-~~~~g~~~l~~ 161 (440)
T PF02133_consen 84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIA-LPLWVCFFIFWLIQTL-FAIYGMKALRR 161 (440)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH------------HHHHHHHHHHHH-HHCTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcch-hhHHHHHHHHHHHHHH-HHhcCHHHHHh
Confidence 999999998888888888888888888888877653210 00 000 0011111111222222 22235555555
Q ss_pred HHHHHHHHHHHHHhhhh-eecccccc--ccCCCCccccccchhhhHHHHhhhccc-ceehhhHHhhccchhhHHHHHHHH
Q 015346 193 LSATGVVATILIVLCVL-FLGTIEGI--GFHPTGQVVKWSGMPFAIGIYGFCYSG-HSVFPNIYQSMADKTKFTKALITC 268 (408)
Q Consensus 193 ~s~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~i~~i~~~m~~p~~~~~~~~~~ 268 (408)
+..+.........+... +.....+. ..+..........+..++....-.+.. ..+.++..+.+|++++-.+....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~ 241 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLG 241 (440)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHH
T ss_pred HHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeeh
Confidence 55544433322222221 11111121 111111111111344444444333332 345678999999988777777777
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCchhh--hhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCCCCc
Q 015346 269 FALCVLIYGGVAVMGFLM----FGQGTLSQ--ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISN 342 (408)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~----fg~~~~~~--il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 342 (408)
..........+|..+... .++...+. ++..+.+.........+....+..+..-...++....+...++++ .
T Consensus 242 ~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~~~--~ 319 (440)
T PF02133_consen 242 FPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNIFPKR--I 319 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCCSTTT---
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHcccee--e
Confidence 777777777777665543 33322221 233332110111112222222333444455666666677776521 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHcC---c-hhHHHHHHhHHHHHHHHHHh
Q 015346 343 NYWCFILLRTALVFSSVCAAFLLP---F-FSLVMALIGSLLSILVAIIM 387 (408)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~p---~-~~~~~~l~Ga~~~~~~~~il 387 (408)
+++++.....++ ........... . +..++++.|...+......+
T Consensus 320 ~~~~~~~~~~~i-~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i 367 (440)
T PF02133_consen 320 SRRRGVIIVGVI-GIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMI 367 (440)
T ss_dssp -HHHHHHHHHHH-HHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHH
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHH
Confidence 222222222222 22222221223 2 56677777777655555443
No 76
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.89 E-value=0.0028 Score=58.95 Aligned_cols=170 Identities=11% Similarity=0.082 Sum_probs=110.7
Q ss_pred ccccccccccchhhhccCCccCCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHh
Q 015346 21 RTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYC 99 (408)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~ 99 (408)
|+.-..||+.+++..+.++-...-..+.+..+.+=..++-|+|...=|..-.+-||+ +.+.+++-+++.--......-.
T Consensus 27 ~~~~~~d~~~~TPA~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~ 106 (376)
T PF02554_consen 27 KKFGKLDDSRPTPAHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLM 106 (376)
T ss_pred heeccCCCCCCCCeeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHh
Confidence 333334444444433322222223367888999999999999999999888999999 7776666555544444444444
Q ss_pred hhhCCCCCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHH
Q 015346 100 FESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVL 179 (408)
Q Consensus 100 ~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (408)
..-+++-+|.+|++++..||+++.+..+..++.+.....++....++.+.+.-. .....+..+...+.+
T Consensus 107 ~SvR~~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~-----------~~~~~~~~I~~Ai~~ 175 (376)
T PF02554_consen 107 ASVRHKGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSPW-----------AATSSLLFIPIAILF 175 (376)
T ss_pred hhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh-----------HHHHHHHHHHHHHHH
Confidence 444566789999999999999999999999988888888888887777655211 011223333334444
Q ss_pred hhhcccCCchhHHHHHHHHHHH
Q 015346 180 PTIWLRDLRVISYLSATGVVAT 201 (408)
Q Consensus 180 pl~~~~~l~~l~~~s~~~~~~~ 201 (408)
.+...|+-.++...+.++++..
T Consensus 176 G~~~y~~~~~~~~~t~i~vvll 197 (376)
T PF02554_consen 176 GLLVYKRGGNLGPATIIGVVLL 197 (376)
T ss_pred hHhheecCCchHhhHHHHHHHH
Confidence 4444444444555666555443
No 77
>PRK10484 putative transporter; Provisional
Probab=97.76 E-value=0.059 Score=54.24 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=85.7
Q ss_pred ccCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
--..|+.+++-..+.+..+.++++. ++.|-.....|+.........++........+..-.+ +.+..|..|+.|+-||
T Consensus 34 flagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~T~~e~l~~Ryg 112 (523)
T PRK10484 34 FLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYL-KSGITTIPDFLEERYD 112 (523)
T ss_pred eecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHhcC
Confidence 3446789999999999999888765 6688777677765221111111111122233333222 4678899999999999
Q ss_pred ccchhHHHHHHHHHHHHHH-HHHHHHhhhhhhhccCCCCCCCCCcccCchh-HH--HHHHHHHHHhhhcccCCchhHHHH
Q 015346 119 KYGRLLISVLLYTELYSYC-VEFIILEGDNLTSLFPGASLDWPGFQLDSTH-LF--GILTALIVLPTIWLRDLRVISYLS 194 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~~~~pl~~~~~l~~l~~~s 194 (408)
++.+.+......+...... ...+...+-.+.+++.... ..+. +... .+ .++..++....+....++...+..
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~gi--~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD 188 (523)
T PRK10484 113 KTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LLGI--SYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSD 188 (523)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hcCC--cHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 9877766554443332222 2222222333333321000 0011 1111 11 122234445567778999998888
Q ss_pred HHHHHHHHH
Q 015346 195 ATGVVATIL 203 (408)
Q Consensus 195 ~~~~~~~~~ 203 (408)
.+-.+..+.
T Consensus 189 ~iQ~vim~i 197 (523)
T PRK10484 189 TINGIGLLI 197 (523)
T ss_pred HHHHHHHHH
Confidence 777654433
No 78
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.64 E-value=0.047 Score=52.28 Aligned_cols=235 Identities=15% Similarity=0.133 Sum_probs=127.6
Q ss_pred CCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhh-hh---CCCCCChHHHHHHhcc
Q 015346 44 HGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCF-ES---KEGITTYPDIGEAAFG 118 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~-~~---~~~~~~y~~l~~~~~G 118 (408)
+-.|...-+....++.+|-|= --.||...+-|-...++.-++..+..---.++.|.. .| ..+..+|.++.. +
T Consensus 7 ~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 7 QWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred chhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 346888889999999999874 569988877775433322222322222222333332 22 344456655555 4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCC--Cc-------ccCchhHHHH---HHHHHHHhhhcccC
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWP--GF-------QLDSTHLFGI---LTALIVLPTIWLRD 186 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~--~~-------~~~~~~~~~~---i~~~~~~pl~~~~~ 186 (408)
|++++ +.+......+..+..|.++.+-.+..+.......++ +. +..++.+..+ +...++.-+...+.
T Consensus 84 ~~~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~G 162 (439)
T COG0733 84 KKWEW-IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRG 162 (439)
T ss_pred ccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Confidence 54443 555566666777888888888777666544332221 00 0011111111 12222222334455
Q ss_pred Cch-hHHHHHHHHHHHHHHHhhhheecccc-----ccccCCCCc---cccccchhhhHHHHhhhcc-cceehhhHHhhcc
Q 015346 187 LRV-ISYLSATGVVATILIVLCVLFLGTIE-----GIGFHPTGQ---VVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMA 256 (408)
Q Consensus 187 l~~-l~~~s~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~ 256 (408)
.++ +.+.+.+-+-..++..+.+.++.... +.+.-..++ ..+++-+..+.+...|+.. |...+......++
T Consensus 163 V~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~ 242 (439)
T COG0733 163 VKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLS 242 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 544 77777766655555544444433221 112111222 2335667889999999987 5666677777777
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 015346 257 DKTKFTKALITCFALCVLIYGGVAVM 282 (408)
Q Consensus 257 ~p~~~~~~~~~~~~~~~~~Y~~~g~~ 282 (408)
|+++..+........-+.+=++.|+.
T Consensus 243 k~~~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 243 KKSDLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHH
Confidence 77787775555544444444444443
No 79
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.13 Score=49.62 Aligned_cols=278 Identities=11% Similarity=0.062 Sum_probs=132.1
Q ss_pred CCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhccc
Q 015346 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLR 185 (408)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 185 (408)
.++..|..++.++|+..++..+...+....++++.....+--++-++.- ...+-.+++++..+.+...+
T Consensus 76 G~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~i-----------p~~~g~iItav~~~iil~~~ 144 (416)
T COG1914 76 GKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGI-----------PLIIGAVITAVDVLIILLLK 144 (416)
T ss_pred CCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHhc
Confidence 3578888999999999998888888888888888888777777766531 13344444555444444444
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhheeccccccccC----C--CCccccccchhhhHHHHhhh------cccceehhh-HH
Q 015346 186 DLRVISYLSATGVVATILIVLCVLFLGTIEGIGFH----P--TGQVVKWSGMPFAIGIYGFC------YSGHSVFPN-IY 252 (408)
Q Consensus 186 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~fa------f~~~~~i~~-i~ 252 (408)
+.+.+.++...-....+..++..... ..+++. . .|...+.......++++-.. |.+++.+-+ ..
T Consensus 145 ~~r~~E~~v~~l~~~~~i~~~~~~~~---~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~ 221 (416)
T COG1914 145 GYRLLERVVLILGLVLVILFVYVAFV---APPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI 221 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc
Confidence 45555554443222222222222211 111111 0 11111111122222222111 111111111 10
Q ss_pred hhccchh--hHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCch-hh---hhcCCCC-chHHHHHHHHHHHH----hhhhh
Q 015346 253 QSMADKT--KFTK-ALITCFALCVLIYGGVAVMGFLMFGQGTL-SQ---ITLNMPP-HAFASKVAVWTTVI----NPFTK 320 (408)
Q Consensus 253 ~~m~~p~--~~~~-~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~-~~---il~~~~~-~~~~~~v~~~~~~~----~~~~~ 320 (408)
.+-++++ |..+ -..+++....++...+-......|..+.. ++ ..+-+.. .+.....+..+..+ +-..+
T Consensus 222 ~~~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s 301 (416)
T COG1914 222 KGEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSS 301 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHH
Confidence 0111111 2222 24445555555555555555555532222 21 1111100 00000111111111 11112
Q ss_pred hhhhhhhhHHHHHhHcCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCC
Q 015346 321 YALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGR 398 (408)
Q Consensus 321 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~ 398 (408)
-...-..-...+++..+. +.+.+.+|...|.....++.++.+...+...++.+.+.+.+..+-+.+++++....+|+
T Consensus 302 ~~~~~~a~~~~~~g~~~~-~~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 302 TVVATYAGQIVMEGFLNW-RIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HHHHhhhhHHHHHhhhcc-cCchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 112212222233333332 23466778888877777766666666699999999998888888777777777765554
No 80
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=97.27 E-value=0.013 Score=56.97 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhH
Q 015346 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (408)
.+.+..+.+=..++-|+|.+.=|..-++.||. +.+.+++-+++.---...+.-....+++-.|.+|++++..|+..+.+
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 67788889999999999999999999999998 76666655555444444554444445667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 015346 125 ISVLLYTELYSYCVEFIILEGDNLTS 150 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~y~~~~~~~l~~ 150 (408)
..+...+.......++....+..+.+
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88877776666666666655555444
No 81
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=97.17 E-value=0.16 Score=51.20 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHhhccc-cchhHHHHHhhc-HH----HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346 46 CSFTQTIFNGINVMAGVG-LLSTPYTVKEAG-WA----SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~G-il~LP~a~~~~G-~~----g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (408)
.|..+-+...++..+|-| +.-.|+-..+-| .. -.+.++++++-..+.=..+.|..+ .+....|.++....=|
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~-~~~~~~~~~~~p~~~g- 82 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSR-SGPIGAWKRLCPIFKG- 82 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTSHHHS-HHHHHHHT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc-
Confidence 477888999999999998 677998876554 32 333444455555555556666544 4444445455433211
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 015346 120 YGRLLISVLLYTELYSYCVEFIILEGDNLT 149 (408)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~ 149 (408)
+.....+..+...+.|.+..+..+.
T Consensus 83 -----iG~~~~~~~~~~~~yy~vi~~w~l~ 107 (523)
T PF00209_consen 83 -----IGYAMVLISFLIAIYYSVIVAWALY 107 (523)
T ss_dssp -----HHHH---HHHHHHHHHHHHHHHHHH
T ss_pred -----ccccccccccccccccccccccccc
Confidence 2333333334444555554444443
No 82
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.12 E-value=0.009 Score=59.37 Aligned_cols=216 Identities=15% Similarity=0.105 Sum_probs=109.3
Q ss_pred hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q 015346 67 TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES--KEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIIL 143 (408)
Q Consensus 67 LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~ 143 (408)
.|+...++|.. .+..+++.-.+..+|..-+...+.+ ..|..-|.-+.+ ..|+..+--+..+.++.+...|..++..
T Consensus 90 ~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISR-sLGpEfGGSIGllFf~anV~~~am~isG 168 (945)
T KOG1288|consen 90 FGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISR-SLGPEFGGSIGLLFFVANVFNCAMNISG 168 (945)
T ss_pred HhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEc-ccCcccCCeeeehhhHHHHhcchhhhhh
Confidence 66777888877 6666666555566665555443321 234445554444 3455433334445555555677777776
Q ss_pred hhhhhhhccCCCCCC-CCCcccCchhHHHHHHH----HHHHhhhcccCCchhHHHHHHHHHHHHHHHhhh----heeccc
Q 015346 144 EGDNLTSLFPGASLD-WPGFQLDSTHLFGILTA----LIVLPTIWLRDLRVISYLSATGVVATILIVLCV----LFLGTI 214 (408)
Q Consensus 144 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~i~~----~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~----~~~~~~ 214 (408)
..+-+.+.+..-..- ..+.++..-+||-++-. .+++.+|++ .-.-.++.+.+-++.+......+ ++.+..
T Consensus 169 ~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~l-GsalfAkas~i~f~~is~s~~si~iS~ifvgp~ 247 (945)
T KOG1288|consen 169 FVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLL-GSALFAKASNILFVVISVSLFSIPISFIFVGPF 247 (945)
T ss_pred hhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHh-hHHHHHhhhhhhhhHHHHHHhhhhheeEEeccc
Confidence 666665555421100 00112222233322222 233334444 22233444443333222222222 222211
Q ss_pred cccc----cC---CC-------------------C------ccccccchhhhHHHHhhhcccceehhhHHhhccchh-hH
Q 015346 215 EGIG----FH---PT-------------------G------QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (408)
Q Consensus 215 ~~~~----~~---~~-------------------~------~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (408)
+... .+ .+ + ......++-..+++++=+-.|...=...-.|+|+|+ -+
T Consensus 248 ~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSI 327 (945)
T KOG1288|consen 248 KDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSI 327 (945)
T ss_pred cCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCccccC
Confidence 1110 00 00 0 001223555666666666666666667788999998 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015346 262 TKALITCFALCVLIYGGVAVMGF 284 (408)
Q Consensus 262 ~~~~~~~~~~~~~~Y~~~g~~gy 284 (408)
|+-...+....++.|.++.+.--
T Consensus 328 P~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 328 PKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred CccchHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998866543
No 83
>PRK15015 carbon starvation protein A; Provisional
Probab=97.08 E-value=0.0094 Score=59.34 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccchhH
Q 015346 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (408)
.+.+-.+-+=..++-|+|.+.=|..-.+.||+ +.+.+++-+++.--......-....+++-+|.+|++++..|++++.+
T Consensus 83 t~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 83 TDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred CCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 56677888999999999999999888899999 77766654444433334443333345666899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 015346 125 ISVLLYTELYSYCVEFIILEGDNLT 149 (408)
Q Consensus 125 ~~~~~~~~~~~~~~~y~~~~~~~l~ 149 (408)
..+..++.+.....++...+++.+.
T Consensus 163 fli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 163 ALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887777777777777664
No 84
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.04 E-value=0.34 Score=46.72 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=77.4
Q ss_pred ccCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHHHHHHHH---HHHHHHHHHHHHHHHhhhhCCCCCCh----HH
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLL---LFAVVCCYTASLMRYCFESKEGITTY----PD 111 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~g~~~l~---~~~~~~~~~~~~l~~~~~~~~~~~~y----~~ 111 (408)
++.+++.|.+|+....+.+.+|+|= .+..-|....|...++.+- +++..+-|+=-.|..-.+++.++.+| .-
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 3445679999999999999999985 4578888888866444333 44555556555665554433333333 23
Q ss_pred HHHHhccccc-hhHHHHHHHHHHHHH--HHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCc
Q 015346 112 IGEAAFGKYG-RLLISVLLYTELYSY--CVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (408)
Q Consensus 112 l~~~~~G~~~-~~~~~~~~~~~~~~~--~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 188 (408)
..++.+|+++ ..+..++ .+..++. ...-.-.+++.+++.++ . ..+..-+...++..+.....+|
T Consensus 93 yi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f~----------i--~~~~~gi~l~~l~~~vi~GGik 159 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAFG----------I--PPWITGIILAILVALVIFGGIK 159 (416)
T ss_pred HHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhcc----------c--cHHHHHHHHHHHHHHHHHcchh
Confidence 4677777653 3333333 1222222 22222233344433221 1 1222333333444455666777
Q ss_pred hhHHHHH
Q 015346 189 VISYLSA 195 (408)
Q Consensus 189 ~l~~~s~ 195 (408)
.+..++.
T Consensus 160 rI~~v~~ 166 (416)
T PF01235_consen 160 RIAKVSE 166 (416)
T ss_pred HHHHHHH
Confidence 7777664
No 85
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.57 E-value=0.75 Score=43.90 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=52.7
Q ss_pred CCCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhc-
Q 015346 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIW- 183 (408)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~- 183 (408)
..++..|..++-+||+..+...+...+.........+...+.-++.++ +.+ ...+.++..+..+-+..
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~----------~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP----------LWIWVLLVAVIAILLLWL 108 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------cHHHHHHHHHHHHHHHHH
Confidence 345788888999999988888887777777777777776666666554 221 23344444444444333
Q ss_pred -ccCCchhHHHHHHH
Q 015346 184 -LRDLRVISYLSATG 197 (408)
Q Consensus 184 -~~~l~~l~~~s~~~ 197 (408)
.++.+.+.+....-
T Consensus 109 ~~~~y~~~E~~~~~l 123 (358)
T PF01566_consen 109 SSGGYRRLERILKVL 123 (358)
T ss_pred HhccchHHHHHHHHH
Confidence 56777777666543
No 86
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.019 Score=56.30 Aligned_cols=225 Identities=15% Similarity=0.097 Sum_probs=128.2
Q ss_pred CCHHHHHHH-HHHHhhcccc-chhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC--CCCCChHHHHHHhcccc
Q 015346 46 CSFTQTIFN-GINVMAGVGL-LSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESK--EGITTYPDIGEAAFGKY 120 (408)
Q Consensus 46 ~s~~~~~~~-l~~~~iG~Gi-l~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~y~~l~~~~~G~~ 120 (408)
-+|++.++. .+-.+.|.=+ |=+++...++|.. +++++.....++..|..-....++|. .+-..| -+..+..|+.
T Consensus 30 fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~y-flis~slg~e 108 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVY-FLISRSLGPE 108 (643)
T ss_pred EeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEE-EEEEeccccc
Confidence 355554442 2222444322 4589999999998 88877776666666554443333321 122233 2345566776
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHH
Q 015346 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 200 (408)
-+--+.++..+.+...+..|.+..++....+++..+ .+..+. ...+..++++.++.. +.+--++...+-++.
T Consensus 109 fggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s----~~~i~g---i~~vt~~ill~i~~a-g~~w~~k~q~~ll~i 180 (643)
T KOG2083|consen 109 FGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES----KEMIDG---IGSVTVLILLAINVA-GVEWEAKLQIVLLLI 180 (643)
T ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc----HHHhcc---hhHHHHHHHHHhhhc-cchhHHHHHHHHHHH
Confidence 666688888888889999999999999999987643 122222 122222333333333 444444454433322
Q ss_pred HHHHHhh-hheeccccc------cccC----CCCcccccc---chhhhHHHHhhhcccceehhhHHhhccchh-hHHHHH
Q 015346 201 TILIVLC-VLFLGTIEG------IGFH----PTGQVVKWS---GMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (408)
Q Consensus 201 ~~~~~~~-~~~~~~~~~------~~~~----~~~~~~~~~---~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (408)
+.+.+.- ++......+ ..+. .+....++. .++..+++++=+..|.-.=..+..++++|+ ..|+-.
T Consensus 181 l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~Ga 260 (643)
T KOG2083|consen 181 LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGA 260 (643)
T ss_pred HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccch
Confidence 2221111 111111111 0000 011111222 567777777777777777778899999998 788889
Q ss_pred HHHHHHHHHHHHHH
Q 015346 266 ITCFALCVLIYGGV 279 (408)
Q Consensus 266 ~~~~~~~~~~Y~~~ 279 (408)
..+..+...+|..+
T Consensus 261 L~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 261 LLAIGVSTLLYLIF 274 (643)
T ss_pred hhhhhhhhhhhhhh
Confidence 99999999999654
No 87
>PRK00701 manganese transport protein MntH; Reviewed
Probab=96.02 E-value=1.7 Score=42.59 Aligned_cols=46 Identities=7% Similarity=-0.072 Sum_probs=32.3
Q ss_pred CCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 015346 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSL 151 (408)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~ 151 (408)
.++..|+.++-+||+..++..+...+...+.........+--++.+
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999988877666666666666666666555555444
No 88
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.01 E-value=1.1 Score=45.65 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHhhccccch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCChHHHHHHhccccc
Q 015346 46 CSFTQTIFNGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES--KEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~-LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~y~~l~~~~~G~~~ 121 (408)
.+......-.+..+.|.-.+- |-+.+..+|.. +..++.+++.++..|+.-+...+.+ .+...+|.-+.+ .+|+..
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISR-sLGPEF 193 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISR-SLGPEF 193 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEec-ccCccc
Confidence 344445555666677765533 77888999999 8888888999999999888777642 234457765544 556655
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccCC
Q 015346 122 RLLISVLLYTELYSYCVEFIILEGDNLTS-LFPG 154 (408)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~-~~~~ 154 (408)
+-.+.++.++-.......|++..-+.+-. ++|.
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~ 227 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPA 227 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHHHHccH
Confidence 55567776766666777788877776544 4443
No 89
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.46 E-value=2.6 Score=40.63 Aligned_cols=317 Identities=14% Similarity=0.129 Sum_probs=155.2
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccc-hhHHHHHhhcHHHHH---HHHHHHHHHHHHHHHHHHhhhhCCCCCChH----HH
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLL-STPYTVKEAGWASLV---VLLLFAVVCCYTASLMRYCFESKEGITTYP----DI 112 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil-~LP~a~~~~G~~g~~---~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~----~l 112 (408)
+.+++.|.+|+......+-+|+|=. +..-|....|...++ +..+++..+-|.=-.|.+..+++.++..|. -.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 4456799999999999999999854 477888888865333 233566667776666665544333333332 23
Q ss_pred HHHhccccc-hhHHHHHHHHHHHH--HHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCch
Q 015346 113 GEAAFGKYG-RLLISVLLYTELYS--YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRV 189 (408)
Q Consensus 113 ~~~~~G~~~-~~~~~~~~~~~~~~--~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 189 (408)
.++-+|.++ ..+..+.. +..+| .+..-.-.+++.+++-++- ..+..-+...++..+.....+++
T Consensus 138 i~kGl~~r~l~v~FA~~l-i~afg~i~n~vQ~NsIa~a~~~af~~------------~~~~~gi~la~l~~~VI~GGi~r 204 (452)
T COG1115 138 IEKGLGMRWLAVLFAFAL-IAAFGFIGNGVQSNSIASALANAFGI------------PPLVTGIVLALLVALVIFGGIKR 204 (452)
T ss_pred HHhhcCCcHHHHHHHHHH-HHHHHhhcchhhHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHHcchHH
Confidence 566666433 33333222 22223 3444444556666665432 12333334444555566678888
Q ss_pred hHHHHHHHHHHHH--HHHhhhheec-cccccc----------cCCCCcccccc------chhhhHHHHhhhcc-cceehh
Q 015346 190 ISYLSATGVVATI--LIVLCVLFLG-TIEGIG----------FHPTGQVVKWS------GMPFAIGIYGFCYS-GHSVFP 249 (408)
Q Consensus 190 l~~~s~~~~~~~~--~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~------~~~~~~~~~~faf~-~~~~i~ 249 (408)
+++++..-+-... ++...+.+.. ..+..+ ...+....+.. .+..++.--+||-+ |....|
T Consensus 205 Ia~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap 284 (452)
T COG1115 205 IAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAP 284 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcch
Confidence 8887765443332 2222211111 111111 00111111111 23445555677776 555555
Q ss_pred hHHhh--ccchhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCchh------hhhcCCCCchHHHHHHHHHHHHh
Q 015346 250 NIYQS--MADKTKFTKALITCF-----ALCVLIYGGVAVMGFLMFGQGTLS------QITLNMPPHAFASKVAVWTTVIN 316 (408)
Q Consensus 250 ~i~~~--m~~p~~~~~~~~~~~-----~~~~~~Y~~~g~~gy~~fg~~~~~------~il~~~~~~~~~~~v~~~~~~~~ 316 (408)
..+.. .++|.|=--+-..+. ++|+.--+.+=+.|-+..++..++ .....++ ++-..+..+.+.+.
T Consensus 285 ~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g--~~G~~fv~i~l~lF 362 (452)
T COG1115 285 IAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLG--SWGSYFVAIALFLF 362 (452)
T ss_pred hHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcC--ccHHHHHHHHHHHH
Confidence 55554 456754233333333 333333333323333333331111 1222233 23333334444455
Q ss_pred hhhhhhhhhhhhHHHHHhHcCCCCCcchhHHHHHHHHHHHHHHHHHHH-cCchhHHHHHHhH
Q 015346 317 PFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFL-LPFFSLVMALIGS 377 (408)
Q Consensus 317 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~p~~~~~~~l~Ga 377 (408)
.++|.--..+-..++++.+.. +++.....|...+.....-+.. .+..+.+-++..+
T Consensus 363 afTTIlg~yyyge~~~~fl~~-----~k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~g 419 (452)
T COG1115 363 AFTTILGWYYYGEKNIEFLFG-----SKKAILLYRLIVLAMVFLGAVLSLDLVWNLADLFMG 419 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHhccccHHHHHHHHHHhch
Confidence 556665565656666666652 2244556676666655554443 3445555554433
No 90
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=94.78 E-value=4.3 Score=39.46 Aligned_cols=174 Identities=13% Similarity=0.115 Sum_probs=105.8
Q ss_pred hCCCCCChHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHh
Q 015346 102 SKEGITTYPDIGEAAFG-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLP 180 (408)
Q Consensus 102 ~~~~~~~y~~l~~~~~G-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 180 (408)
|+-+.++..|...+=++ ++.|.+..+.-....+...+.-++-.+..+..+++- ....-.++..+++..
T Consensus 99 Rk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv-----------~~~vgv~ig~ilm~~ 167 (529)
T COG4147 99 RKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV-----------PYHVGVVIGGILMMV 167 (529)
T ss_pred HhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC-----------CceeehhhHhHHHHH
Confidence 57788999998765554 567777777667777777777778778777777652 122334555666666
Q ss_pred hhcccCCchhHHHHHHHHHHHHHHHhh----hheeccc-----------ccccc---CCCCccccccchhhhHHHHhhhc
Q 015346 181 TIWLRDLRVISYLSATGVVATILIVLC----VLFLGTI-----------EGIGF---HPTGQVVKWSGMPFAIGIYGFCY 242 (408)
Q Consensus 181 l~~~~~l~~l~~~s~~~~~~~~~~~~~----~~~~~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~faf 242 (408)
......++...|.+.+--+..+...++ +.+.... ....+ ...++....++..+.++...--.
T Consensus 168 Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm 247 (529)
T COG4147 168 YVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALM 247 (529)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHH
Confidence 777889999998887654433322111 1111100 00010 01111122345555555555445
Q ss_pred ccceehhhHHhhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015346 243 SGHSVFPNIYQSM---ADKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (408)
Q Consensus 243 ~~~~~i~~i~~~m---~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 286 (408)
.|..-+|++.-.. .+-|+-++.+.++...+..+|+..-..|+.+
T Consensus 248 ~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 248 VGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666654433 3445788999999999999999887777653
No 91
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.61 E-value=0.4 Score=45.83 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=45.4
Q ss_pred CCCCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 015346 104 EGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (408)
Q Consensus 104 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~ 154 (408)
++..-..+++++.||+.|+.+..+...+.|+..++......+|++++..++
T Consensus 252 ~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 252 NGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred CcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345567789999999999999999999999999999999999999998653
No 92
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=94.25 E-value=5.6 Score=39.79 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHhhccccc-hhHHHHH-hhcH---H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 46 CSFTQTIFNGINVMAGVGLL-STPYTVK-EAGW---A-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil-~LP~a~~-~~G~---~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
.+..+.....++..++.|=. -.||-.. ..|+ + -.+++++.|+=..|-=..+.+-.+ .+...-+..++=..-|
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r-~g~~gvw~ri~P~l~G 159 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR-QGCIGVWRRIAPALKG 159 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc-ccchhHHHHhCHHhcC
Confidence 57788889999999988764 4898774 3443 3 566777777777777666766643 4444444444443333
No 93
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.24 E-value=0.33 Score=47.02 Aligned_cols=80 Identities=20% Similarity=0.377 Sum_probs=60.8
Q ss_pred CCCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcc
Q 015346 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL 184 (408)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 184 (408)
+..-..+++++.+|+.|..+..+...+.|+-.++.-....+|++++..+..+ ...+..+.+++.+.++..
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kis----------Y~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKIS----------YKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------hHHHHHHHHHHHHHHHHh
Confidence 3344678899999999999999999999999999999999999999987432 344555566666666555
Q ss_pred cCCchhHHHHH
Q 015346 185 RDLRVISYLSA 195 (408)
Q Consensus 185 ~~l~~l~~~s~ 195 (408)
+++.+-.++.
T Consensus 329 -Gl~~Ii~~s~ 338 (427)
T PF05525_consen 329 -GLDQIIKISV 338 (427)
T ss_pred -CHHHHHHHHH
Confidence 5555554444
No 94
>PHA02764 hypothetical protein; Provisional
Probab=94.01 E-value=2.8 Score=38.55 Aligned_cols=91 Identities=13% Similarity=-0.044 Sum_probs=54.1
Q ss_pred CCCCHHHHHH-HHHHHhhccccchhHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 015346 44 HGCSFTQTIF-NGINVMAGVGLLSTPYTVKEA--GWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY 120 (408)
Q Consensus 44 ~~~s~~~~~~-~l~~~~iG~Gil~LP~a~~~~--G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 120 (408)
|..|.+++++ |+.+...|.++ +.|+-+... |...+..+++.++++...+....+...+.|+...-....++++|++
T Consensus 12 REvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP~ 90 (399)
T PHA02764 12 KSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSSK 90 (399)
T ss_pred eeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCcc
Confidence 4478888887 55555555543 556544333 4334445555555555555555555544444433333399999999
Q ss_pred chhHHHHHHHHHHHH
Q 015346 121 GRLLISVLLYTELYS 135 (408)
Q Consensus 121 ~~~~~~~~~~~~~~~ 135 (408)
.+.+..+..++....
T Consensus 91 ~GFLvG~a~WLtl~~ 105 (399)
T PHA02764 91 FYTIFGISLWLTYVL 105 (399)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888766655433
No 95
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=93.99 E-value=7.2 Score=38.74 Aligned_cols=24 Identities=13% Similarity=-0.086 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHhhccccch
Q 015346 43 AHGCSFTQTIFNGINVMAGVGLLS 66 (408)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~ 66 (408)
++.-|.++-...+..+-+|+|++.
T Consensus 72 kPefS~~sW~aMlf~aGig~Givf 95 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVF 95 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhc
Confidence 344688888899999999999874
No 96
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=92.92 E-value=1.7 Score=41.50 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=59.7
Q ss_pred CCCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcc
Q 015346 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL 184 (408)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 184 (408)
+.+=..+..++.||+.|..+..++..+.|+-.++..+...+|++++.++..+ ...|..+..++.+.+...
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S----------Y~~~v~if~i~sflvan~ 330 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS----------YKTWVIIFTLISFLVANL 330 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHh
Confidence 4455678899999999999999999999999999999999999999998543 334445555555544444
Q ss_pred cCCchhHHHHH
Q 015346 185 RDLRVISYLSA 195 (408)
Q Consensus 185 ~~l~~l~~~s~ 195 (408)
++..+-..|.
T Consensus 331 -GL~~Ii~isv 340 (431)
T COG1114 331 -GLEQIIKISV 340 (431)
T ss_pred -hHHHHHHHHH
Confidence 4454444443
No 97
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=91.42 E-value=15 Score=35.97 Aligned_cols=251 Identities=15% Similarity=0.123 Sum_probs=114.9
Q ss_pred cCCCCCCHHHHHHHHHHHhhccccchhHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC---CChHHHHH
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGI---TTYPDIGE 114 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G--~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~---~~y~~l~~ 114 (408)
+.+|.=|+++-+..=....++.+..-+..+.-+.| |- +++.+.+--.+ +...+ .....+|. .+++-..|
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~---~~~f~--~lns~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF---TAIFL--VLNSRPGSDYHISFPVLSR 125 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH---HHHHH--HHccCCCcccccceeeeee
Confidence 33455689988888888888888877777777778 33 55544332111 11111 11223433 36677778
Q ss_pred Hhccccchh---HHHHHHHHHHHHHHHHHHHHhhhhhhh----ccC---CCCCCCCCcccCc-hhHHHHHHHHHHHhhhc
Q 015346 115 AAFGKYGRL---LISVLLYTELYSYCVEFIILEGDNLTS----LFP---GASLDWPGFQLDS-THLFGILTALIVLPTIW 183 (408)
Q Consensus 115 ~~~G~~~~~---~~~~~~~~~~~~~~~~y~~~~~~~l~~----~~~---~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~ 183 (408)
..||-++.. +..+.+.+..+|... -..++.++- +++ +.....+..-... +....+++=++.+|+.+
T Consensus 126 ~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~ 202 (572)
T KOG2466|consen 126 SSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYW 202 (572)
T ss_pred eehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheee
Confidence 888776543 344444444444321 122222222 222 2111111111111 22233344455666655
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhh-hheecccccc--c-cCCCCccccc---cchhhhHHHHhhhcc-cceehhhHHhhc
Q 015346 184 LRDLRVISYLSATGVVATILIVLC-VLFLGTIEGI--G-FHPTGQVVKW---SGMPFAIGIYGFCYS-GHSVFPNIYQSM 255 (408)
Q Consensus 184 ~~~l~~l~~~s~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~~~~~~~---~~~~~~~~~~~faf~-~~~~i~~i~~~m 255 (408)
.| ...++++-....+.+....+. +++.....+. + .+......+. +.+..++...+-.|. ...|.|+..+--
T Consensus 203 ~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ 281 (572)
T KOG2466|consen 203 FP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFA 281 (572)
T ss_pred cc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhc
Confidence 53 334444433333332222222 2222222211 1 1111111222 233344444343443 345778888888
Q ss_pred cchhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCC--chhhhhcCCC
Q 015346 256 ADKTKFTKALITCFALCVLIY----GGVAVMGFLMFGQG--TLSQITLNMP 300 (408)
Q Consensus 256 ~~p~~~~~~~~~~~~~~~~~Y----~~~g~~gy~~fg~~--~~~~il~~~~ 300 (408)
|+|.+....-.+++-+.+.+- ++.+..++..||.. .+-++++++.
T Consensus 282 ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 282 KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 888644333333333333333 34455677889865 3334555543
No 98
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=90.56 E-value=4.1 Score=40.36 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=40.1
Q ss_pred CCCCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 015346 104 EGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (408)
Q Consensus 104 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~ 153 (408)
+......++-....||++......+..+..+.++++..+..+.....+-.
T Consensus 322 ~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 322 SLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred CCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 33456788889999999998888888888888888888888777766543
No 99
>PRK09928 choline transport protein BetT; Provisional
Probab=90.18 E-value=25 Score=36.35 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHhhccccch
Q 015346 44 HGCSFTQTIFNGINVMAGVGLLS 66 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~ 66 (408)
+.-|.++-+.++..+-+|+|++.
T Consensus 91 PefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 91 PEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCcchHHHHHHHHhhhhhhee
Confidence 33566667788889999999873
No 100
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=89.83 E-value=3.8 Score=41.24 Aligned_cols=232 Identities=16% Similarity=0.068 Sum_probs=120.0
Q ss_pred cCCCCCCHHHHHHHHHHHhhcccc-chhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcc
Q 015346 41 PIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (408)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (408)
...|+.-++-..+.+..+.+|++- +++|--....|.. ..+.+....... ...+...-. ..+.+..+-.|..++-||
T Consensus 42 l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~-~~~~~f~Pv-f~~~~v~~~~eYl~~Rf~ 119 (585)
T KOG2349|consen 42 LGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVL-LLGWIFIPV-FYRLGVTTMYEYLEKRFG 119 (585)
T ss_pred hcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHH-hhheEEEEE-EEecCeeehhHHHHHHhc
Confidence 335677888888888888888754 7899877777754 332222111111 111111111 124456677788999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHH
Q 015346 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (408)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 198 (408)
+..+....+...++.+....+++..-+-.+.+..+. .. +...++..+++..-.....++..-+.-.+-.
T Consensus 120 ~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------~~---~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~ 188 (585)
T KOG2349|consen 120 GRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------NL---YLIVVILGLICVFYTALGGLKAVIWTDVVQT 188 (585)
T ss_pred ccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------Cc---eeehHHHHHHHHHHHHhcCeeEEEEhhHHHH
Confidence 997777776666666555544444444444444321 11 1111222333333344556666665555554
Q ss_pred HHHHHHHhhhheecccccc---------------------ccCCCCccccccchhhhHHHHhhhcccceehhhHHhhccc
Q 015346 199 VATILIVLCVLFLGTIEGI---------------------GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMAD 257 (408)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 257 (408)
.....-+..+++.+..... ..++.....-|.-++.........++.+++...=+-.+|+
T Consensus 189 ~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~s 268 (585)
T KOG2349|consen 189 VIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPS 268 (585)
T ss_pred HHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhcccc
Confidence 4444434344433321100 0011111112233334455556667777776666666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015346 258 KTKFTKALITCFALCVLIYGGVAVMGFL 285 (408)
Q Consensus 258 p~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 285 (408)
-++.++.........++...+..+.|..
T Consensus 269 lk~ak~~~~~~~~~~~l~~~~~~~~G~i 296 (585)
T KOG2349|consen 269 LKHAKPSLLLFGYGVLLIMFIMVFVGMI 296 (585)
T ss_pred HHHhhhhhhhhhhHHHHHHHhhccccee
Confidence 6777777666555555555544444443
No 101
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.18 E-value=4.3 Score=39.52 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=57.8
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCc
Q 015346 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (408)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 188 (408)
.....++.+|+++..+..+..++.|+-.++......++.+++..+ . ++..+..+..++.++++.. +++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i----------sY~~~v~i~~l~S~~lSn~-G~~ 334 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L----------SYRTLVFILGGFSMVVSNL-GLS 334 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----------cHHHHHHHHHHHHHHHHHh-HHH
Confidence 456689999999999999999999999999999999999998864 1 2445666677777777666 455
Q ss_pred hhHHHHH
Q 015346 189 VISYLSA 195 (408)
Q Consensus 189 ~l~~~s~ 195 (408)
.+-..+.
T Consensus 335 ~II~~s~ 341 (439)
T PRK15433 335 QLIQISV 341 (439)
T ss_pred HHHHHHH
Confidence 4444443
No 102
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=86.33 E-value=31 Score=32.77 Aligned_cols=236 Identities=12% Similarity=0.032 Sum_probs=114.2
Q ss_pred CCCCHHHHHHHHHHHhhccc-cchhHHHHHhhcHHHHHHHHHHHHH-HHHHHHHHHHhh---hhCCCCCChHHHHHHhc-
Q 015346 44 HGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVV-CCYTASLMRYCF---ESKEGITTYPDIGEAAF- 117 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~G-il~LP~a~~~~G~~g~~~l~~~~~~-~~~~~~~l~~~~---~~~~~~~~y~~l~~~~~- 117 (408)
|+.+-+-..+....+-+++. ..+=|-+..+-|.. ++++...-+- .+.+.-.+.+-. .|+.+..+..|+-++=+
T Consensus 39 Rsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glg-wvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~ 117 (473)
T COG4145 39 RSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLG-WVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQ 117 (473)
T ss_pred CcccceehhhHHHHHHHHHhhhcCCCcHHHHhchH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhc
Confidence 44555555566666666553 23445555544421 2222222111 222222332211 24667778888887664
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHH
Q 015346 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (408)
Q Consensus 118 G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 197 (408)
++.-.++.++...++..+...+-.+..+..++....- + ...-.++++..+..-....+.+.....-.+.
T Consensus 118 s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi----------d-Y~tgL~ifa~~V~iYt~fGGFRAvvltD~IQ 186 (473)
T COG4145 118 SRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI----------D-YTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQ 186 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC----------C-chhhHHHHHHHHHHHHhhcceeeeehHHHHH
Confidence 5556677788888888888888888888887776542 1 1223344455555555555555544433322
Q ss_pred HHH----HHHHHhhhheec--ccc------ccccCC--CCcccc---ccchhhhHHHHhhhcccceehhhHHhhccchhh
Q 015346 198 VVA----TILIVLCVLFLG--TIE------GIGFHP--TGQVVK---WSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTK 260 (408)
Q Consensus 198 ~~~----~~~~~~~~~~~~--~~~------~~~~~~--~~~~~~---~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 260 (408)
-.. .+..++.+++.+ ..+ +.+.+. +....+ +.-+.+..-.++++-.|++....=.-..||.+-
T Consensus 187 G~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDska 266 (473)
T COG4145 187 GLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDSKA 266 (473)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccchhH
Confidence 111 112222222221 110 111110 111111 111223333355555565544433334466665
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCc
Q 015346 261 FTKALITCFALCVLIYG---GVAVMGFLMFGQGT 291 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~Y~---~~g~~gy~~fg~~~ 291 (408)
..+.+.++..++.++-+ +.|..|...+.|-+
T Consensus 267 ih~gmiigt~vi~il~~gmhl~G~~graViPdlt 300 (473)
T COG4145 267 IHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT 300 (473)
T ss_pred HhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC
Confidence 66666666655555544 45666666666543
No 103
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=82.03 E-value=66 Score=33.18 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhhccccch-hHHHHHhhcH----H-HHHHHHHHHHHHHHHHHHHHHhh
Q 015346 46 CSFTQTIFNGINVMAGVGLLS-TPYTVKEAGW----A-SLVVLLLFAVVCCYTASLMRYCF 100 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~-LP~a~~~~G~----~-g~~~l~~~~~~~~~~~~~l~~~~ 100 (408)
.|..+-....++-++|-|=+= .|+...+-|- + -.+++.++|+=..+--..+.+-.
T Consensus 38 ~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~ 98 (629)
T KOG3660|consen 38 KSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFT 98 (629)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhh
Confidence 488999999999999988654 9987765553 2 34445555555555555555554
No 104
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=79.88 E-value=69 Score=32.03 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHhhccccch
Q 015346 46 CSFTQTIFNGINVMAGVGLLS 66 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~ 66 (408)
-|..+-+.++..+-+|.|++.
T Consensus 88 fs~~SW~aMLFaAGmGigl~f 108 (537)
T COG1292 88 FSTLSWLAMLFAAGMGIGLLF 108 (537)
T ss_pred cchhHHHHHHHHcccCceeeE
Confidence 455666778888999999874
No 105
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=76.60 E-value=75 Score=30.69 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=29.9
Q ss_pred CCCChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 015346 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (408)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~ 152 (408)
..++..|++++.++|+.++...+...+...+.........+--++-++
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999877655544444444555555554444444443
No 106
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=72.26 E-value=1e+02 Score=30.12 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHcC-chhHHHHHHhHHHHHHHHHHhhHHHHHHHhC
Q 015346 347 FILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSILVAIIMPSLCFIKILG 397 (408)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~p-~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~ 397 (408)
|..........+.+.++..| .+....+.+|.+..++.+-+.|.+++++-++
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666677778888888 8888889899899999999999999998755
No 107
>PRK09950 putative transporter; Provisional
Probab=71.37 E-value=1.2e+02 Score=30.51 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=50.7
Q ss_pred hCCCCCChHHHHHHhcccc----chhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCc-hhHHHHHHHH
Q 015346 102 SKEGITTYPDIGEAAFGKY----GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDS-THLFGILTAL 176 (408)
Q Consensus 102 ~~~~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 176 (408)
|+.+..+.++..+-.+|++ .+.++|++..+...+....-+-.....+..-+++.. |...+. .+...++...
T Consensus 162 rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~----Gi~~~~~~~~~ii~vi~ 237 (506)
T PRK09950 162 RKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALT----GLPNNFTVQAFVILLSG 237 (506)
T ss_pred hcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc----CCCCchHHHHHHHHHHH
Confidence 4555567888888888864 345677766555544444444433444333332221 111111 1222222333
Q ss_pred HHHhhhcccCC-chhHHHHHHHHHHHHHHHhhhh
Q 015346 177 IVLPTIWLRDL-RVISYLSATGVVATILIVLCVL 209 (408)
Q Consensus 177 ~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~~ 209 (408)
.+.-++....+ |.++++|.+.+...+...+.++
T Consensus 238 ~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vl 271 (506)
T PRK09950 238 VIFCLSSYIGIDNGLQRLSKMVGWGAFLFALLVL 271 (506)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 33444445555 6666666666555444443333
No 108
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=69.29 E-value=1.2e+02 Score=29.73 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHhhccccchhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346 46 CSFTQTIFNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~LP~a~-~~~G--~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (408)
......-+.+.+...|+|=|-.|-.. .++| |. +.+-.++.++..-.-..+-.. +.++ ++.++++++--+.+
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~---~~~~--~~~~l~~~v~~~f~ 77 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA---KSGG--GIEDLASRVGPKFA 77 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh---hcCC--CHHHHhcccCcHHH
Confidence 34566778899999999999999777 4666 55 766666666554433322211 1222 77777775543333
Q ss_pred h
Q 015346 122 R 122 (408)
Q Consensus 122 ~ 122 (408)
.
T Consensus 78 ~ 78 (427)
T PF05525_consen 78 L 78 (427)
T ss_pred H
Confidence 3
No 109
>PLN02680 carbon-monoxide oxygenase
Probab=68.49 E-value=85 Score=27.78 Aligned_cols=98 Identities=11% Similarity=0.197 Sum_probs=59.9
Q ss_pred cccccchhhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchH
Q 015346 225 VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAF 304 (408)
Q Consensus 225 ~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~ 304 (408)
.+++=.+....+.+.. .++..+. ++..+.+++.+|.+....-....+..++|+.....+.++ .+..+-++-..|
T Consensus 46 ~Fn~HPlLM~~Gfi~l--~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSW 119 (232)
T PLN02680 46 IFNVHPVLMVIGLVLL--NGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSW 119 (232)
T ss_pred eEechHHHHHHHHHHH--HHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHH
Confidence 5566566665555542 2222222 344555667778888888888888888888665555443 333333333356
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh
Q 015346 305 ASKVAVWTTVINPFTKYALLMNPL 328 (408)
Q Consensus 305 ~~~v~~~~~~~~~~~~~p~~~~~~ 328 (408)
.-.+..++..++.+..+....+|-
T Consensus 120 lGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 120 LGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 666666677777777776666664
No 110
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=67.58 E-value=1.4e+02 Score=29.95 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHhhccccch
Q 015346 44 HGCSFTQTIFNGINVMAGVGLLS 66 (408)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~ 66 (408)
+.-|.++-+..+..+-+|+|++.
T Consensus 84 Pefs~~sW~aMlf~aG~G~gllf 106 (504)
T PRK03356 84 PEFSTASWIFMMFASCTSAAVLF 106 (504)
T ss_pred CCccchHHHHHHHHHhhhhhhhh
Confidence 33566777788889999999874
No 111
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=66.97 E-value=78 Score=26.76 Aligned_cols=108 Identities=11% Similarity=0.106 Sum_probs=59.2
Q ss_pred cccccCCCCccccccchhhhHHHHhhhcccceehhhHHhhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015346 215 EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA---DKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGT 291 (408)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~---~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 291 (408)
.+..++.+...+|+=.+...++.+.. .-+.+.. ++..+ .+++..|.+....-...++..++|+.....+-++.
T Consensus 24 gG~~w~~~~~~Fn~HP~lMv~Gfi~L---~geAiL~-Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~ 99 (179)
T cd08762 24 GGFAWDGSSKNFNWHPVLMVTGMVVL---YGNAALV-YRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH 99 (179)
T ss_pred CccCCCCCCCceeehHHHHHHHHHHH---HHHHHHh-hcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44444433335555555444444333 2222222 22222 35566788888888888888888887666665432
Q ss_pred hhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhh
Q 015346 292 LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (408)
Q Consensus 292 ~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~ 328 (408)
.+.+.++-..|.-.....++.++-+..+....+|.
T Consensus 100 --~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 100 --HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred --CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333332345555555666666666666665553
No 112
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=66.61 E-value=1.4e+02 Score=29.53 Aligned_cols=47 Identities=9% Similarity=-0.076 Sum_probs=26.2
Q ss_pred hCCCCCChHHHHHHhcccc----chhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015346 102 SKEGITTYPDIGEAAFGKY----GRLLISVLLYTELYSYCVEFIILEGDNL 148 (408)
Q Consensus 102 ~~~~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~~~~~~y~~~~~~~l 148 (408)
|+.+..+..+..+-.+|++ .+.++|++..+...+....-+-.....+
T Consensus 115 rk~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi 165 (453)
T TIGR00842 115 RKGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQI 165 (453)
T ss_pred ecCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555567888888888854 2346676555444444433333333333
No 113
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=55.64 E-value=27 Score=21.04 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=17.1
Q ss_pred HHHHHhHHHHHHHHHHhhHHHHHHHhCCCCCccc
Q 015346 371 VMALIGSLLSILVAIIMPSLCFIKILGRKATRTQ 404 (408)
Q Consensus 371 ~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~~~~ 404 (408)
.++.+.++...+...++ +++++..+++|.+++|
T Consensus 5 ~IaIIv~V~vg~~iiii-~~~~YaCcykk~~~~k 37 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIII-CMFYYACCYKKHRRQK 37 (38)
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHccccccc
Confidence 34555555444444444 4555555666655444
No 114
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=51.98 E-value=49 Score=23.87 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=13.1
Q ss_pred CchhhhHHHhhhccccccccc
Q 015346 8 LSEYEKEELDRISRTRSSLSE 28 (408)
Q Consensus 8 ~s~~~~~~~~~~~~~~~~~~~ 28 (408)
+||+|++..+++.+.....|+
T Consensus 3 LSe~E~r~L~eiEr~L~~~DP 23 (82)
T PF11239_consen 3 LSEHEQRRLEEIERQLRADDP 23 (82)
T ss_pred CCHHHHHHHHHHHHHHHhcCc
Confidence 677887766666555544444
No 115
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=50.94 E-value=2.5e+02 Score=27.58 Aligned_cols=69 Identities=17% Similarity=0.070 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHhhccccchhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 015346 47 SFTQTIFNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY 120 (408)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~LP~a~-~~~G--~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 120 (408)
.....-+.+..--.|+|=|=.|-.. .++| |. +.+-..+.++..-.-..+- .+ +.+ .++.+++++.-.+.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiia--va--~~~-g~~~~l~~rv~~~f 81 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVA--LA--KVG-GGVDSLSTPIGKVA 81 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--Hh--hcC-CCHHHHhhhcchHH
Confidence 5667888999999999999999777 4666 44 6655555554432222211 11 112 36777776543333
No 116
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.58 E-value=1.3e+02 Score=23.14 Aligned_cols=72 Identities=17% Similarity=0.032 Sum_probs=43.9
Q ss_pred CCccCCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHH-HHHHHHHHHHHHHHhhhhCCCCCCh
Q 015346 38 GELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLL-FAVVCCYTASLMRYCFESKEGITTY 109 (408)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~-~~~~~~~~~~~l~~~~~~~~~~~~y 109 (408)
.|...-++.|.-+......-+....-++++|.+.-..+|. .....++ ..+...++...+.+..+.+|+..=|
T Consensus 10 ~ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl~ 83 (111)
T TIGR03750 10 REPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGYLY 83 (111)
T ss_pred CCCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHHH
Confidence 3344457788888777776666666678899777666787 4443333 3444555666676665444443333
No 117
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=46.05 E-value=1.4e+02 Score=23.25 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHhhccccchhHHHHHhh---c-HH-HHHHHHH---HHHHHHHHHHHHHHhhhhCCCCCChHHH
Q 015346 47 SFTQTIFNGINVMAGVGLLSTPYTVKEA---G-WA-SLVVLLL---FAVVCCYTASLMRYCFESKEGITTYPDI 112 (408)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~LP~a~~~~---G-~~-g~~~l~~---~~~~~~~~~~~l~~~~~~~~~~~~y~~l 112 (408)
.|...++.+.=.++|+..+.+...+... | -. ++.++++ +.+=-.|-.+++..+.+ ..+-.+|.++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~r-g~~Gysf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWR-GYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHc-CCCCCCHhhC
Confidence 5666666666667777766666444211 2 22 3333222 22224455555555544 4444666654
No 118
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=42.72 E-value=1.8e+02 Score=23.59 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=45.2
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhh
Q 015346 254 SMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (408)
Q Consensus 254 ~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~ 328 (408)
..+.++|..|.+....-....+..++|+.....+.++. +..+-++-..|.-.+..+++.++.+..+....+|-
T Consensus 32 ~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 32 TVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555667778888888888888888885555554332 23233332345555566666666666665556664
No 119
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=41.88 E-value=72 Score=20.79 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 015346 263 KALITCFALCVLIYGGVAVMGFLMFGQGTL 292 (408)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 292 (408)
.-+.+-.++..++|++.|+.-+..+.+++.
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 455666778899999999988877765543
No 120
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=39.18 E-value=24 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015346 263 KALITCFALCVLIYGGVAVMGFLMFGQG 290 (408)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (408)
.+...++.+..++.-+.|..-|.+||..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 3455556666666666666667788854
No 121
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=37.99 E-value=31 Score=21.44 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015346 265 LITCFALCVLIYGGVAVMGFLMFGQG 290 (408)
Q Consensus 265 ~~~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (408)
...++.+..++..+.|...|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34455666666666777777888854
No 122
>PLN00151 potassium transporter; Provisional
Probab=36.94 E-value=5.6e+02 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=16.2
Q ss_pred chhhhHHHHhhhcccceehhhHHhhccc
Q 015346 230 GMPFAIGIYGFCYSGHSVFPNIYQSMAD 257 (408)
Q Consensus 230 ~~~~~~~~~~faf~~~~~i~~i~~~m~~ 257 (408)
+-+..+|-++.+..|.+ .++.+|-+
T Consensus 345 ~gw~~LGgVvLciTGaE---ALfADLGH 369 (852)
T PLN00151 345 KAWSALGGCVLCATGSE---AMFADLGY 369 (852)
T ss_pred ceEEEecceeeeeccch---hhhcccCC
Confidence 44556777777888877 44556643
No 123
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=36.36 E-value=1.4e+02 Score=25.31 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=23.8
Q ss_pred HHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 015346 71 VKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKE 104 (408)
Q Consensus 71 ~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~ 104 (408)
|..-..+ |++.+++.++..-++++++.+...+..
T Consensus 118 f~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ 152 (226)
T COG4858 118 FQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMR 152 (226)
T ss_pred HhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4444556 888888888888888887776654433
No 124
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.97 E-value=4.4e+02 Score=26.02 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=8.3
Q ss_pred HHHHHhhcccc
Q 015346 54 NGINVMAGVGL 64 (408)
Q Consensus 54 ~l~~~~iG~Gi 64 (408)
.+.++.+|+|.
T Consensus 293 ~Lfsa~lGsG~ 303 (593)
T KOG1277|consen 293 LLFSAVLGSGA 303 (593)
T ss_pred HHHHHHhcccc
Confidence 46678889885
No 125
>PRK01766 multidrug efflux protein; Reviewed
Probab=35.22 E-value=4.4e+02 Score=25.75 Aligned_cols=29 Identities=7% Similarity=-0.138 Sum_probs=18.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015346 256 ADKTKFTKALITCFALCVLIYGGVAVMGF 284 (408)
Q Consensus 256 ~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy 284 (408)
+|+++.++....+..+.+.+....+...+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T PRK01766 309 GRTLDARQYAYIGLAVGLGMALLTAIFLV 337 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766665544333
No 126
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=34.97 E-value=1.2e+02 Score=22.31 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=23.3
Q ss_pred ccCCCCCCHHHHHHHHHHHhhccccchhHHH
Q 015346 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPYT 70 (408)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a 70 (408)
++.-.+.|+.|.+.......+|.|+..+-+.
T Consensus 11 ~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 11 EKIFFGLTLRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred chhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344568999999999999999886554433
No 127
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=34.88 E-value=84 Score=24.64 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHhhccccchhHHHHHhhcHH--HHHHHHHHH
Q 015346 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA--SLVVLLLFA 86 (408)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~--g~~~l~~~~ 86 (408)
++.+..--+.++++ .|-+++|..++++|.+ |...+...+
T Consensus 65 ~~idlA~FlTg~~v-vs~falPiVl~ha~lI~~gAc~l~~tg 105 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIV-VSAFALPIVLAHAGLIGWGACALVLTG 105 (131)
T ss_pred HHHHHHHHHhcchh-hhhhhhHHHHHHhhHhhhhhhhhhhcC
Confidence 55555555555444 4458999999999988 444555555
No 128
>PLN00150 potassium ion transporter family protein; Provisional
Probab=34.70 E-value=5.9e+02 Score=27.12 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=16.7
Q ss_pred chhhhHHHHhhhcccceehhhHHhhccc
Q 015346 230 GMPFAIGIYGFCYSGHSVFPNIYQSMAD 257 (408)
Q Consensus 230 ~~~~~~~~~~faf~~~~~i~~i~~~m~~ 257 (408)
+-+..+|-++.+..|.+ .++.+|-+
T Consensus 285 ~g~~~LG~V~L~iTGaE---ALyADlGH 309 (779)
T PLN00150 285 QGWESLGGIVLCMTGTE---AMFADLGH 309 (779)
T ss_pred ceEEEecceeeeecchh---hhhccccC
Confidence 44556777778888887 45566654
No 129
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=33.31 E-value=4.9e+02 Score=25.74 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=31.4
Q ss_pred CChHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 015346 107 TTYPDIGEAAFGK-YGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (408)
Q Consensus 107 ~~y~~l~~~~~G~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~ 152 (408)
..+.++.+..+|. .+..+..+...+..+++...++...+..+..+-
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 335 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFS 335 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888 555566666666667777777776666665543
No 130
>CHL00020 psbN photosystem II protein N
Probab=32.87 E-value=22 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015346 264 ALITCFALCVLIYGGVAVMGFLMFGQG 290 (408)
Q Consensus 264 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (408)
+...++.+..++.-+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 344555566666666666667778854
No 131
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=31.19 E-value=3.8e+02 Score=23.84 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=64.3
Q ss_pred ccccccCCCC-ccccccchhhhHHHHhhhcccceehhhHHhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015346 214 IEGIGFHPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQS-MADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGT 291 (408)
Q Consensus 214 ~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~-m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 291 (408)
.++..++..+ ..+|+=.++. ++-|-|..-+.+. +|+- ....||..|.+....=++.+...++|+.....+-+..
T Consensus 42 r~Glaw~~~~~~~fnlHP~lM---viGfI~l~GeAiL-~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~ 117 (245)
T KOG1619|consen 42 RGGLAWSSSPNKEFNLHPVLM---VIGFIYLQGEAIL-IYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLV 117 (245)
T ss_pred CCccCCCCCcchhcCcchHHH---HHHHHHhccceee-eeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445555544 3344444443 3444444334444 3444 4455688999999999999888999998877775544
Q ss_pred hhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhh
Q 015346 292 LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (408)
Q Consensus 292 ~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~ 328 (408)
. +.+-++-..|.-....+++.++-...|.-..+|.
T Consensus 118 ~--i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 118 G--IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred C--ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3 2222222346655666666666666666555554
No 132
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.99 E-value=1.5e+02 Score=21.54 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=22.0
Q ss_pred hhhHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015346 248 FPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFG 288 (408)
Q Consensus 248 i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 288 (408)
..+..+.-.+|.+..+=....+.++..+-+++|++.|..||
T Consensus 30 fidFSK~~s~~~~~~wRalSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 30 FVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred hhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444544455533322222333344445777888888888
No 133
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=29.44 E-value=5.6e+02 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=21.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015346 256 ADKTKFTKALITCFALCVLIYGGVAVMGF 284 (408)
Q Consensus 256 ~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy 284 (408)
+|++|.++....+....+.+-..+++.-+
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~ 339 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLL 339 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888877766665444
No 134
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=29.24 E-value=5.7e+02 Score=25.25 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=36.3
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 015346 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (408)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~ 152 (408)
..++.+..+|+++..++.+......+++..+++...+..+..+-
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ama 313 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAA 313 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999988888888888888888888887777776654
No 135
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=27.92 E-value=5.8e+02 Score=24.95 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHHHHhhHHHHH
Q 015346 372 MALIGSLLSILVAIIMPSLCFI 393 (408)
Q Consensus 372 ~~l~Ga~~~~~~~~ilP~l~~~ 393 (408)
++..|+-.++.+...+-+++.+
T Consensus 188 ~Gi~Gaa~At~is~~~~~~~~~ 209 (453)
T PRK09575 188 WGLTGAAIATALAQLVVTVLGL 209 (453)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888887776544
No 136
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=27.58 E-value=3.5e+02 Score=22.26 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhh
Q 015346 259 TKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (408)
Q Consensus 259 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~ 328 (408)
+|..|.+....-....+..++|+.....+.++. +..+-++-..|.-.+..++..++.+..+....+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 566778888888888888888887666664432 33322333356666667777778888877777775
No 137
>TIGR00909 2A0306 amino acid transporter.
Probab=26.96 E-value=5.8e+02 Score=24.62 Aligned_cols=46 Identities=13% Similarity=0.000 Sum_probs=37.1
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 015346 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (408)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~ 152 (408)
....+..++..|+++..++.+...+..+++....+...+..+...-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a 309 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888889888888888888888888888888888776654
No 138
>COG4709 Predicted membrane protein [Function unknown]
Probab=26.09 E-value=4.2e+02 Score=22.64 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHhhccccchhHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHHHHh
Q 015346 46 CSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLMRYC 99 (408)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~LP~a~-~~~G~~-g~~~l~~~~~~~~~~~~~l~~~ 99 (408)
-+..+++.++. |.|+++.|... -..|.+ -++.+++.++...++.+.+.-+
T Consensus 76 ~n~~~aii~~~----~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~a 127 (195)
T COG4709 76 KNVRRAIIALI----GLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAA 127 (195)
T ss_pred cchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555544 44555555444 122333 3333334444444555555443
No 139
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=25.98 E-value=6.5e+02 Score=24.81 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=64.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCC-chHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Q 015346 255 MADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPP-HAFASKVAVWTTVINPFTKYALLMNPLARSIE 333 (408)
Q Consensus 255 m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~-~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~ 333 (408)
-+|+++.+++...+..+..++-++.++..+..= ++++.-+.. ++........ +-+..+...+..++-..+...
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~ll~~l~~~~~v~~~a~~Y-l~i~~~~~~~~~~~~~~~~~l 159 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFA-----EPLLRLLGAPAEVLELAAEY-LRIILLGAPFALLSFVLSGIL 159 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888877777666432 444444443 2222222222 222222233333333333333
Q ss_pred hHcCCCCCcchhHHHHHHHHHHHHHHHHHHH-cC-chhHHHHHHhHHHHHHHHHHhhHHHHHHHh
Q 015346 334 ELLPAGISNNYWCFILLRTALVFSSVCAAFL-LP-FFSLVMALIGSLLSILVAIIMPSLCFIKIL 396 (408)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~p-~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~ 396 (408)
+-..+. + .-.....+......++... +- .++. ++..|+-..+.++..+-+++.+..-
T Consensus 160 r~~G~~----~-~~m~~~~~~~~lNivln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~~~~ 218 (455)
T COG0534 160 RGLGDT----K-TPMYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLLIYL 218 (455)
T ss_pred HhcCCC----c-hhHHHHHHHHHHHHHhhHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 222211 1 1222222222222222221 11 1333 8889999899888888776655443
No 140
>PLN02810 carbon-monoxide oxygenase
Probab=25.56 E-value=4.8e+02 Score=23.14 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=56.6
Q ss_pred cccccchhhhHHHHhhhcccceehhhHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchH
Q 015346 225 VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAF 304 (408)
Q Consensus 225 ~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~ 304 (408)
.+|+=.+...++ |.|..-+.+.. ++..+.+++.+|.+....=...++..++|+.....+.++. .+.+-++-..|
T Consensus 46 ~FN~HPvlMv~G---fi~l~geAIL~-Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i~nlySLHSW 119 (231)
T PLN02810 46 IFNLHPVLMLIG---LIIIGGEAIMS-YKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GIANLYSLHSW 119 (231)
T ss_pred eeeehHHHHHHH---HHHHhhHHHHH-hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCceeeHHHH
Confidence 455555544444 33333333322 2445555677888888888888888888887666665433 33333333345
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh
Q 015346 305 ASKVAVWTTVINPFTKYALLMNPL 328 (408)
Q Consensus 305 ~~~v~~~~~~~~~~~~~p~~~~~~ 328 (408)
.-.....+..++-+..+....+|.
T Consensus 120 lGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 120 LGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555555666666666665555554
No 141
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=25.45 E-value=3.3e+02 Score=21.32 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHhhcHH--HHHHHHHHHHHHHHHHHHHHH
Q 015346 48 FTQTIFNGINVMAGVGLLSTPYTVKEAGWA--SLVVLLLFAVVCCYTASLMRY 98 (408)
Q Consensus 48 ~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~--g~~~l~~~~~~~~~~~~~l~~ 98 (408)
..+...-+.+..+=+ -++||..++++|.+ |...+.+.+-+..|...+...
T Consensus 60 ~~d~~~FlT~~~vvS-g~aLP~VL~H~~~I~~~A~~l~l~g~~ii~~ti~~f~ 111 (120)
T PF04133_consen 60 CQDFGKFLTGFLVVS-GFALPIVLAHAGIIQWGACGLSLAGGVIIYATIIGFF 111 (120)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444444444444 48999999999987 555666666666666554433
No 142
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=23.43 E-value=3.2e+02 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHhhccccchhHHHHHhh
Q 015346 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEA 74 (408)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~ 74 (408)
+..+..+....+.-++|+-+=-+||.+...
T Consensus 134 ~~p~~aal~s~~sf~lg~liPllpy~~~~~ 163 (218)
T cd02432 134 ANPWQAALASAISFSVGALLPLLAILLAPA 163 (218)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346677888888888998888899987443
No 143
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=23.38 E-value=3.8e+02 Score=27.73 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=36.1
Q ss_pred hccccchhHHHHH--hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 015346 60 AGVGLLSTPYTVK--EAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY 120 (408)
Q Consensus 60 iG~Gil~LP~a~~--~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 120 (408)
...++......+. +..+. .++.+++..+++..+.+...++- ..+...+..+.+..+|-.
T Consensus 367 ~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~--~~P~~~~~~~sqli~g~~ 428 (624)
T PF03169_consen 367 FVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETG--INPVSGLNILSQLIFGLL 428 (624)
T ss_pred HHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcC--CCcchhhhHHHHHHHHHH
Confidence 3334566667773 44455 45555566666777766666652 356667777788777753
No 144
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=20.63 E-value=4.2e+02 Score=20.77 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=37.7
Q ss_pred cCCccCCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH--HHHHHHHHHHH-HHHHHHHHHHhh
Q 015346 37 TGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA--SLVVLLLFAVV-CCYTASLMRYCF 100 (408)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~--g~~~l~~~~~~-~~~~~~~l~~~~ 100 (408)
+.|..--++.|.-+......-+.+-..++++|.++- .||. +....++..++ .......+.+.-
T Consensus 12 N~ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rlK 77 (121)
T PF11990_consen 12 NREPVVFRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARLK 77 (121)
T ss_pred cCCCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334445678888888777766666667788998887 5543 33333333333 444445555553
Done!