Query 015347
Match_columns 408
No_of_seqs 123 out of 1048
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10916 ADP-heptose:LPS hepto 100.0 3.9E-47 8.5E-52 380.7 28.4 267 123-408 1-279 (348)
2 PRK10422 lipopolysaccharide co 100.0 2.2E-47 4.9E-52 383.2 26.0 267 120-408 3-280 (352)
3 TIGR02201 heptsyl_trn_III lipo 100.0 8.2E-47 1.8E-51 377.5 25.8 266 124-408 1-278 (344)
4 TIGR02195 heptsyl_trn_II lipop 100.0 5.5E-46 1.2E-50 369.9 27.9 262 124-408 1-269 (334)
5 PRK10964 ADP-heptose:LPS hepto 100.0 2.5E-44 5.4E-49 356.7 24.2 258 123-408 1-271 (322)
6 COG0859 RfaF ADP-heptose:LPS h 100.0 1.3E-43 2.8E-48 354.1 24.1 264 122-408 1-269 (334)
7 TIGR02193 heptsyl_trn_I lipopo 100.0 3.9E-43 8.5E-48 347.0 23.7 260 124-408 1-272 (319)
8 cd03789 GT1_LPS_heptosyltransf 100.0 4.7E-37 1E-41 298.4 23.8 209 124-408 1-216 (279)
9 PF01075 Glyco_transf_9: Glyco 100.0 1.3E-28 2.8E-33 234.4 13.6 192 191-408 1-201 (247)
10 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 7.2E-07 1.6E-11 90.6 19.1 258 123-407 1-298 (365)
11 PRK10017 colanic acid biosynth 98.4 1.4E-05 3.1E-10 82.8 16.9 42 123-164 1-45 (426)
12 PRK00025 lpxB lipid-A-disaccha 97.9 7.9E-05 1.7E-09 75.1 10.2 103 122-227 1-112 (380)
13 PRK05749 3-deoxy-D-manno-octul 97.2 0.14 3.1E-06 52.5 24.2 100 123-229 50-152 (425)
14 COG1519 KdtA 3-deoxy-D-manno-o 97.1 0.032 7E-07 57.3 17.3 244 125-395 51-322 (419)
15 PF04007 DUF354: Protein of un 96.8 0.16 3.5E-06 51.2 19.4 242 123-403 1-260 (335)
16 cd03786 GT1_UDP-GlcNAc_2-Epime 96.6 0.073 1.6E-06 52.9 15.7 101 125-227 2-115 (363)
17 cd03785 GT1_MurG MurG is an N- 96.5 0.55 1.2E-05 46.3 20.9 101 124-228 1-116 (350)
18 cd03807 GT1_WbnK_like This fam 96.4 0.29 6.3E-06 47.0 18.2 96 124-222 1-101 (365)
19 TIGR01133 murG undecaprenyldip 96.4 0.3 6.6E-06 48.1 18.4 101 123-227 1-116 (348)
20 cd03808 GT1_cap1E_like This fa 96.0 0.36 7.8E-06 46.1 16.1 84 124-210 1-88 (359)
21 TIGR03492 conserved hypothetic 96.0 0.35 7.5E-06 49.8 16.7 97 129-229 3-118 (396)
22 PRK13609 diacylglycerol glucos 95.9 0.3 6.6E-06 49.2 16.0 85 302-402 193-284 (380)
23 cd04951 GT1_WbdM_like This fam 95.7 0.53 1.1E-05 45.9 16.3 83 303-397 180-269 (360)
24 PRK12446 undecaprenyldiphospho 95.7 0.89 1.9E-05 46.0 18.1 104 122-229 1-119 (352)
25 PRK00726 murG undecaprenyldiph 95.5 1.3 2.8E-05 44.1 18.4 103 122-228 1-118 (357)
26 TIGR03609 S_layer_CsaB polysac 95.5 0.3 6.5E-06 47.8 13.5 59 339-397 191-257 (298)
27 PRK13608 diacylglycerol glucos 95.5 0.36 7.8E-06 49.3 14.6 91 121-212 4-114 (391)
28 TIGR00236 wecB UDP-N-acetylglu 95.5 0.83 1.8E-05 45.8 17.0 101 123-227 1-113 (365)
29 PF13528 Glyco_trans_1_3: Glyc 95.3 0.95 2.1E-05 44.2 16.5 103 123-232 1-121 (318)
30 TIGR03088 stp2 sugar transfera 95.3 0.77 1.7E-05 45.8 16.0 103 123-229 2-108 (374)
31 COG0707 MurG UDP-N-acetylgluco 95.3 2.3 4.9E-05 43.4 19.3 106 123-229 1-119 (357)
32 PF02684 LpxB: Lipid-A-disacch 94.8 0.61 1.3E-05 47.8 13.8 241 125-397 1-267 (373)
33 TIGR03590 PseG pseudaminic aci 94.7 4.6 0.0001 39.4 20.7 84 132-222 13-99 (279)
34 PRK01021 lpxB lipid-A-disaccha 94.6 0.68 1.5E-05 50.1 13.9 242 122-397 226-495 (608)
35 PF13477 Glyco_trans_4_2: Glyc 93.5 1.5 3.2E-05 37.2 11.6 95 124-224 1-98 (139)
36 PLN02871 UDP-sulfoquinovose:DA 93.5 11 0.00024 39.2 21.0 104 121-231 57-175 (465)
37 COG0763 LpxB Lipid A disacchar 92.9 1.9 4.2E-05 44.0 12.9 219 122-369 1-241 (381)
38 cd03794 GT1_wbuB_like This fam 92.8 9.5 0.00021 36.6 18.9 62 336-397 233-301 (394)
39 TIGR00215 lpxB lipid-A-disacch 92.6 2.7 5.8E-05 43.0 13.9 113 122-238 5-126 (385)
40 cd03820 GT1_amsD_like This fam 92.2 9.4 0.0002 36.0 16.4 86 124-212 1-93 (348)
41 PRK10307 putative glycosyl tra 91.5 9 0.00019 38.9 16.3 84 302-397 220-310 (412)
42 cd03812 GT1_CapH_like This fam 91.2 15 0.00033 35.6 18.5 102 124-230 1-109 (358)
43 cd03823 GT1_ExpE7_like This fa 91.0 15 0.00033 35.1 17.3 78 309-398 189-270 (359)
44 cd04962 GT1_like_5 This family 90.8 17 0.00038 35.6 17.1 84 123-209 1-91 (371)
45 PLN02605 monogalactosyldiacylg 90.4 4.7 0.0001 40.9 12.9 19 193-211 91-109 (382)
46 cd03811 GT1_WabH_like This fam 90.1 17 0.00036 34.3 19.6 85 124-211 1-90 (353)
47 cd03817 GT1_UGDG_like This fam 89.9 15 0.00032 35.2 15.5 82 305-398 196-286 (374)
48 PF14595 Thioredoxin_9: Thiore 89.9 1.1 2.3E-05 39.0 6.6 62 121-182 41-107 (129)
49 cd03801 GT1_YqgM_like This fam 89.8 18 0.00039 34.1 16.4 102 124-227 1-111 (374)
50 cd03819 GT1_WavL_like This fam 89.7 20 0.00044 34.7 18.4 74 131-210 10-86 (355)
51 TIGR00661 MJ1255 conserved hyp 89.3 2.3 5.1E-05 42.0 9.5 100 124-228 1-117 (321)
52 cd03799 GT1_amsK_like This is 89.0 11 0.00024 36.5 13.9 61 337-397 193-262 (355)
53 PRK14089 ipid-A-disaccharide s 88.5 3.8 8.3E-05 41.6 10.4 227 122-397 1-242 (347)
54 PF04230 PS_pyruv_trans: Polys 87.7 23 0.0005 32.7 17.6 33 132-164 1-33 (286)
55 PRK15490 Vi polysaccharide bio 87.1 11 0.00023 40.9 13.2 41 190-230 268-309 (578)
56 cd05844 GT1_like_7 Glycosyltra 85.7 36 0.00078 33.2 15.6 59 339-397 204-271 (367)
57 PF04413 Glycos_transf_N: 3-De 84.7 2.7 5.7E-05 38.8 6.4 91 124-223 22-115 (186)
58 cd03784 GT1_Gtf_like This fami 81.1 4.5 9.8E-05 40.9 7.1 100 123-227 1-128 (401)
59 PF02350 Epimerase_2: UDP-N-ac 73.5 6.4 0.00014 39.8 5.6 66 337-402 198-270 (346)
60 PRK15179 Vi polysaccharide bio 71.0 90 0.0019 34.8 14.1 40 190-229 388-428 (694)
61 cd03804 GT1_wbaZ_like This fam 71.0 97 0.0021 30.3 13.3 60 336-397 205-268 (351)
62 cd03818 GT1_ExpC_like This fam 70.8 1.2E+02 0.0026 30.4 20.0 36 124-164 1-36 (396)
63 COG3980 spsG Spore coat polysa 70.1 1.2E+02 0.0026 30.2 16.7 73 123-210 1-77 (318)
64 COG0381 WecB UDP-N-acetylgluco 68.6 1.5E+02 0.0032 30.6 17.0 103 122-232 3-122 (383)
65 PF02441 Flavoprotein: Flavopr 67.4 5.5 0.00012 34.1 3.1 53 123-178 1-54 (129)
66 PRK06849 hypothetical protein; 63.7 35 0.00075 34.7 8.6 84 120-212 2-86 (389)
67 PF06258 Mito_fiss_Elm1: Mitoc 63.3 1.5E+02 0.0033 29.5 12.9 102 290-402 125-241 (311)
68 cd03802 GT1_AviGT4_like This f 62.2 35 0.00076 32.7 8.0 100 123-226 1-109 (335)
69 PRK09922 UDP-D-galactose:(gluc 61.8 51 0.0011 32.7 9.4 85 123-210 1-92 (359)
70 cd03798 GT1_wlbH_like This fam 60.4 1.5E+02 0.0033 27.8 20.2 61 337-397 216-285 (377)
71 PRK05647 purN phosphoribosylgl 60.0 60 0.0013 30.2 8.8 84 122-210 1-88 (200)
72 cd03814 GT1_like_2 This family 59.7 1.6E+02 0.0035 28.0 17.0 59 336-397 210-273 (364)
73 PF04464 Glyphos_transf: CDP-G 59.7 8.7 0.00019 38.6 3.4 49 114-164 5-55 (369)
74 COG1819 Glycosyl transferases, 58.8 12 0.00025 38.8 4.2 88 122-212 1-106 (406)
75 TIGR02700 flavo_MJ0208 archaeo 58.4 18 0.00038 34.5 5.1 47 124-170 1-47 (234)
76 cd03795 GT1_like_4 This family 58.4 1.7E+02 0.0038 27.9 20.3 76 309-397 189-270 (357)
77 COG1158 Rho Transcription term 57.6 55 0.0012 33.3 8.4 93 120-212 171-269 (422)
78 COG1105 FruK Fructose-1-phosph 52.1 1.4E+02 0.003 30.0 10.3 55 289-357 110-164 (310)
79 cd03822 GT1_ecORF704_like This 51.9 2.2E+02 0.0048 27.1 19.5 81 124-210 1-84 (366)
80 PRK12678 transcription termina 51.7 1.2E+02 0.0026 33.4 10.3 100 120-221 414-520 (672)
81 COG1036 Archaeal flavoproteins 51.7 4 8.8E-05 36.9 -0.5 46 123-169 9-55 (187)
82 PRK06029 3-octaprenyl-4-hydrox 51.4 28 0.0006 32.2 4.9 46 122-169 1-46 (185)
83 PTZ00372 endonuclease 4-like p 51.2 99 0.0021 32.3 9.4 26 381-406 286-316 (413)
84 COG2327 WcaK Polysaccharide py 51.0 83 0.0018 32.5 8.7 39 123-161 1-42 (385)
85 cd04955 GT1_like_6 This family 50.1 2.4E+02 0.0052 27.1 23.0 101 124-229 1-113 (363)
86 PRK12767 carbamoyl phosphate s 46.3 1E+02 0.0022 30.2 8.5 77 122-210 1-77 (326)
87 PF03033 Glyco_transf_28: Glyc 45.5 54 0.0012 27.5 5.6 54 125-182 1-54 (139)
88 PRK12608 transcription termina 45.3 1E+02 0.0023 31.7 8.4 97 120-217 131-233 (380)
89 PF00534 Glycos_transf_1: Glyc 45.0 1.2E+02 0.0027 26.0 8.1 82 304-397 8-99 (172)
90 cd01133 F1-ATPase_beta F1 ATP 44.5 2.7E+02 0.0058 27.4 10.8 99 111-212 60-172 (274)
91 TIGR02174 CXXU_selWTH selT/sel 43.1 35 0.00075 26.3 3.6 51 140-192 16-68 (72)
92 PRK07313 phosphopantothenoylcy 42.4 49 0.0011 30.3 5.1 44 122-168 1-44 (182)
93 COG1576 Uncharacterized conser 41.3 1.4E+02 0.0029 27.0 7.5 29 333-361 77-107 (155)
94 cd03805 GT1_ALG2_like This fam 40.3 3.7E+02 0.008 26.4 20.1 38 123-162 1-40 (392)
95 PLN02448 UDP-glycosyltransfera 39.8 65 0.0014 33.8 6.2 61 119-180 7-70 (459)
96 PRK05920 aromatic acid decarbo 39.4 56 0.0012 30.7 5.1 44 122-168 3-46 (204)
97 cd01635 Glycosyltransferase_GT 39.2 1.9E+02 0.0041 25.3 8.5 49 133-212 13-61 (229)
98 PF13579 Glyco_trans_4_4: Glyc 38.6 57 0.0012 27.1 4.7 88 140-230 8-102 (160)
99 cd08475 PBP2_CrgA_like_6 The C 37.5 75 0.0016 27.1 5.4 40 138-179 15-54 (199)
100 PF12362 DUF3646: DNA polymera 37.3 28 0.0006 29.8 2.4 21 136-156 94-114 (117)
101 PF01408 GFO_IDH_MocA: Oxidore 37.3 1.1E+02 0.0025 24.8 6.2 84 123-226 1-86 (120)
102 COG1817 Uncharacterized protei 36.9 4.6E+02 0.01 26.6 16.2 235 138-403 15-264 (346)
103 PRK09288 purT phosphoribosylgl 36.8 2.5E+02 0.0055 28.3 9.9 82 114-212 4-85 (395)
104 PF12466 GDH_N: Glutamate dehy 35.5 20 0.00043 26.6 1.0 18 137-154 33-50 (60)
105 TIGR03590 PseG pseudaminic aci 35.5 2.7E+02 0.0059 26.9 9.5 90 121-228 169-264 (279)
106 PF05830 NodZ: Nodulation prot 35.1 1.2E+02 0.0026 30.4 6.7 109 293-406 151-292 (321)
107 cd08471 PBP2_CrgA_like_2 The C 35.0 84 0.0018 26.9 5.3 41 137-179 14-54 (201)
108 PF08660 Alg14: Oligosaccharid 34.8 1.3E+02 0.0027 27.3 6.5 36 188-223 78-114 (170)
109 PRK06455 riboflavin synthase; 34.6 85 0.0018 28.2 5.1 42 122-164 1-42 (155)
110 PF03466 LysR_substrate: LysR 34.5 70 0.0015 27.7 4.8 39 123-161 5-43 (209)
111 cd03806 GT1_ALG11_like This fa 34.4 1.6E+02 0.0034 30.3 8.0 97 134-232 16-136 (419)
112 cd08422 PBP2_CrgA_like The C-t 34.2 78 0.0017 26.8 4.9 41 138-180 15-55 (197)
113 KOG1198 Zinc-binding oxidoredu 33.9 2.4E+02 0.0051 28.6 8.9 79 120-212 156-235 (347)
114 TIGR02095 glgA glycogen/starch 33.9 2.3E+02 0.005 29.4 9.2 32 128-163 14-45 (473)
115 COG1182 AcpD Acyl carrier prot 33.5 74 0.0016 29.9 4.7 49 122-176 1-54 (202)
116 PRK08462 biotin carboxylase; V 32.8 1.4E+02 0.003 31.0 7.3 83 121-211 3-85 (445)
117 cd03816 GT1_ALG1_like This fam 32.4 3.7E+02 0.008 27.4 10.3 105 122-229 3-126 (415)
118 cd08488 PBP2_AmpR The C-termin 32.2 89 0.0019 26.9 5.0 39 139-179 15-53 (191)
119 PRK00170 azoreductase; Reviewe 32.2 74 0.0016 28.8 4.6 38 122-159 1-42 (201)
120 cd08477 PBP2_CrgA_like_8 The C 32.1 1.6E+02 0.0036 24.9 6.7 40 138-179 15-54 (197)
121 PRK08591 acetyl-CoA carboxylas 32.0 1.4E+02 0.003 30.9 7.2 81 122-210 2-82 (451)
122 cd08472 PBP2_CrgA_like_3 The C 31.8 1E+02 0.0022 26.5 5.3 40 138-179 15-54 (202)
123 cd08479 PBP2_CrgA_like_9 The C 31.7 1.5E+02 0.0032 25.4 6.3 42 136-179 13-54 (198)
124 cd08476 PBP2_CrgA_like_7 The C 31.7 89 0.0019 26.5 4.9 40 139-180 14-53 (197)
125 PRK09376 rho transcription ter 31.6 2E+02 0.0042 30.1 7.9 93 120-212 167-265 (416)
126 cd03792 GT1_Trehalose_phosphor 31.3 2.6E+02 0.0056 27.7 8.8 44 124-169 1-46 (372)
127 cd08473 PBP2_CrgA_like_4 The C 30.3 1.1E+02 0.0023 26.2 5.2 45 132-179 12-56 (202)
128 cd08482 PBP2_TrpI The C-termin 29.9 1.5E+02 0.0033 25.4 6.1 41 137-179 13-53 (195)
129 cd08446 PBP2_Chlorocatechol Th 29.9 98 0.0021 26.5 4.9 30 130-160 8-37 (198)
130 PLN02316 synthase/transferase 29.6 1.8E+02 0.0039 34.0 8.0 45 115-163 580-632 (1036)
131 cd08470 PBP2_CrgA_like_1 The C 29.3 1.3E+02 0.0027 25.7 5.5 41 138-180 15-55 (197)
132 TIGR01369 CPSaseII_lrg carbamo 29.2 1.5E+02 0.0033 34.7 7.4 82 119-211 3-90 (1050)
133 cd08487 PBP2_BlaA The C-termin 28.9 1.7E+02 0.0036 24.8 6.2 41 138-180 14-54 (189)
134 PLN02496 probable phosphopanto 28.9 1.1E+02 0.0024 28.9 5.1 57 109-169 6-62 (209)
135 TIGR02699 archaeo_AfpA archaeo 28.4 1.1E+02 0.0023 28.1 4.9 44 124-169 1-45 (174)
136 TIGR01426 MGT glycosyltransfer 28.0 2.9E+02 0.0064 27.7 8.6 93 130-227 3-116 (392)
137 TIGR00612 ispG_gcpE 1-hydroxy- 27.9 6.6E+02 0.014 25.6 16.5 193 127-366 98-308 (346)
138 cd05566 PTS_IIB_galactitol PTS 27.9 94 0.002 24.3 4.0 32 123-157 1-32 (89)
139 PRK12815 carB carbamoyl phosph 27.6 3.5E+02 0.0077 31.8 10.1 82 119-211 4-91 (1068)
140 cd08478 PBP2_CrgA The C-termin 27.4 1.2E+02 0.0025 26.1 4.9 40 138-179 17-56 (199)
141 TIGR02113 coaC_strep phosphopa 27.2 1.1E+02 0.0023 28.0 4.7 43 123-168 1-43 (177)
142 KOG2178 Predicted sugar kinase 26.9 2.8E+02 0.0061 28.8 7.9 100 119-232 90-199 (409)
143 cd08452 PBP2_AlsR The C-termin 26.5 1E+02 0.0022 26.7 4.3 28 132-160 9-36 (197)
144 PF00551 Formyl_trans_N: Formy 26.1 1.2E+02 0.0025 27.5 4.8 84 123-211 1-88 (181)
145 TIGR00715 precor6x_red precorr 25.7 3E+02 0.0064 26.7 7.7 93 123-232 1-99 (256)
146 PRK12597 F0F1 ATP synthase sub 25.7 8.1E+02 0.018 26.0 11.4 97 121-219 142-252 (461)
147 COG1448 TyrB Aspartate/tyrosin 25.6 3.6E+02 0.0079 27.9 8.5 41 308-357 170-212 (396)
148 cd08450 PBP2_HcaR The C-termin 25.5 1.1E+02 0.0023 26.1 4.3 24 137-160 13-36 (196)
149 cd04910 ACT_AK-Ectoine_1 ACT d 25.4 43 0.00093 26.0 1.5 18 139-156 53-70 (71)
150 PRK05294 carB carbamoyl phosph 25.4 1.8E+02 0.0038 34.2 7.1 82 119-211 4-91 (1066)
151 cd05563 PTS_IIB_ascorbate PTS_ 25.1 82 0.0018 24.5 3.1 33 124-159 1-33 (86)
152 PRK10086 DNA-binding transcrip 24.8 2.4E+02 0.0053 27.3 7.1 47 131-180 110-156 (311)
153 cd08474 PBP2_CrgA_like_5 The C 24.7 1.4E+02 0.003 25.6 4.9 40 138-179 17-56 (202)
154 PRK14997 LysR family transcrip 24.6 2.2E+02 0.0049 27.1 6.8 53 124-179 93-145 (301)
155 TIGR02149 glgA_Coryne glycogen 24.3 5.2E+02 0.011 25.3 9.5 38 123-163 1-43 (388)
156 cd08440 PBP2_LTTR_like_4 TThe 23.7 1.5E+02 0.0032 25.0 4.8 30 130-160 7-36 (197)
157 cd08484 PBP2_LTTR_beta_lactama 23.4 1.3E+02 0.0028 25.6 4.4 41 138-180 14-54 (189)
158 PF01531 Glyco_transf_11: Glyc 23.3 5.2E+02 0.011 25.3 9.1 94 309-406 162-263 (298)
159 TIGR00587 nfo apurinic endonuc 23.3 2.8E+02 0.0061 26.7 7.1 26 380-405 154-184 (274)
160 cd05466 PBP2_LTTR_substrate Th 23.2 2.7E+02 0.0059 22.9 6.3 43 137-180 13-57 (197)
161 cd08441 PBP2_MetR The C-termin 23.2 93 0.002 26.7 3.5 23 138-160 14-36 (198)
162 cd08434 PBP2_GltC_like The sub 23.0 1.4E+02 0.003 25.1 4.5 31 130-161 7-37 (195)
163 cd08416 PBP2_MdcR The C-termin 23.0 3E+02 0.0066 23.3 6.7 42 138-180 14-57 (199)
164 cd08411 PBP2_OxyR The C-termin 22.9 1.4E+02 0.0031 25.4 4.7 49 129-179 7-57 (200)
165 PRK15484 lipopolysaccharide 1, 22.9 4.9E+02 0.011 26.1 9.1 15 383-397 268-283 (380)
166 TIGR00246 tRNA_RlmH_YbeA rRNA 22.7 2.7E+02 0.0059 24.8 6.3 29 333-361 75-105 (153)
167 cd08480 PBP2_CrgA_like_10 The 22.6 1.6E+02 0.0036 25.3 5.0 41 137-179 14-54 (198)
168 PF00834 Ribul_P_3_epim: Ribul 22.5 6.3E+02 0.014 23.4 9.3 100 125-230 83-193 (201)
169 PLN02735 carbamoyl-phosphate s 22.2 3.5E+02 0.0077 32.0 8.7 82 119-211 20-107 (1102)
170 cd08463 PBP2_DntR_like_4 The C 22.1 1.9E+02 0.004 25.4 5.3 27 132-159 9-35 (203)
171 KOG1838 Alpha/beta hydrolase [ 22.1 40 0.00086 35.0 0.9 59 111-169 143-214 (409)
172 KOG2804 Phosphorylcholine tran 22.1 1.2E+02 0.0026 30.4 4.1 92 103-207 45-154 (348)
173 cd08456 PBP2_LysR The C-termin 22.0 1.7E+02 0.0037 24.8 4.9 42 137-179 13-56 (196)
174 PRK14098 glycogen synthase; Pr 21.8 5.7E+02 0.012 27.0 9.6 60 338-397 322-388 (489)
175 PRK10632 transcriptional regul 21.7 2.9E+02 0.0064 26.7 7.0 54 124-180 93-146 (309)
176 cd08425 PBP2_CynR The C-termin 21.6 3.1E+02 0.0068 23.2 6.5 42 137-179 14-57 (197)
177 PRK03359 putative electron tra 21.5 6.3E+02 0.014 24.5 9.0 88 144-232 46-146 (256)
178 cd08431 PBP2_HupR The C-termin 21.4 1.1E+02 0.0023 26.3 3.4 28 132-160 9-36 (195)
179 cd08485 PBP2_ClcR The C-termin 21.4 1.8E+02 0.0039 25.2 4.9 31 129-160 7-37 (198)
180 cd08461 PBP2_DntR_like_3 The C 21.3 1.6E+02 0.0035 25.0 4.7 43 137-180 13-57 (198)
181 PRK08305 spoVFB dipicolinate s 21.3 2E+02 0.0044 26.8 5.4 46 121-168 4-49 (196)
182 PF13439 Glyco_transf_4: Glyco 21.2 1.6E+02 0.0036 24.7 4.6 87 139-231 18-108 (177)
183 PF01937 DUF89: Protein of unk 21.2 1.7E+02 0.0038 29.6 5.3 63 122-202 184-248 (355)
184 cd08483 PBP2_HvrB The C-termin 21.1 2.7E+02 0.0058 23.5 6.0 41 137-179 13-53 (190)
185 cd08436 PBP2_LTTR_like_3 The C 21.0 2.1E+02 0.0046 24.0 5.3 29 131-160 8-36 (194)
186 cd01423 MGS_CPS_I_III Methylgl 21.0 4.7E+02 0.01 21.5 7.9 70 135-212 11-81 (116)
187 COG1377 FlhB Flagellar biosynt 20.9 56 0.0012 33.4 1.7 22 383-407 254-276 (363)
188 COG1440 CelA Phosphotransferas 20.9 3.3E+02 0.0071 22.8 5.9 53 122-177 1-53 (102)
189 cd08445 PBP2_BenM_CatM_CatR Th 20.7 1.7E+02 0.0036 25.3 4.6 24 137-160 14-37 (203)
190 PF09670 Cas_Cas02710: CRISPR- 20.6 8.6E+02 0.019 24.9 10.3 67 141-212 2-80 (379)
191 PF01118 Semialdhyde_dh: Semia 20.6 3.7E+02 0.008 22.3 6.5 79 124-222 1-86 (121)
192 PRK06298 type III secretion sy 20.6 48 0.001 33.9 1.1 22 383-407 248-270 (356)
193 TIGR03449 mycothiol_MshA UDP-N 20.6 5.7E+02 0.012 25.4 9.1 23 137-161 24-46 (405)
194 cd08458 PBP2_NocR The C-termin 20.5 2E+02 0.0043 24.7 5.0 42 137-179 13-56 (196)
195 cd05568 PTS_IIB_bgl_like PTS_I 20.5 3.8E+02 0.0083 20.2 6.4 30 123-155 1-30 (85)
196 PF13028 DUF3889: Protein of u 20.4 85 0.0018 26.0 2.3 18 142-159 30-47 (97)
197 TIGR02919 accessory Sec system 20.3 7.5E+02 0.016 25.9 10.0 97 119-232 279-378 (438)
198 PF09505 Dimeth_Pyl: Dimethyla 20.3 99 0.0021 31.2 3.2 37 123-159 208-244 (466)
199 cd08430 PBP2_IlvY The C-termin 20.0 1.8E+02 0.004 24.6 4.7 40 139-179 15-56 (199)
200 TIGR03472 HpnI hopanoid biosyn 20.0 8.4E+02 0.018 24.5 10.1 67 142-210 59-134 (373)
No 1
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=100.00 E-value=3.9e-47 Score=380.73 Aligned_cols=267 Identities=16% Similarity=0.077 Sum_probs=208.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCC
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRY 202 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~ 202 (408)
||||||++++|||+||+||++++||++||+++||||+.+.++++++++|+||+|++++++.....+..+++++++||+++
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~~~~~~~~~~~~l~~~lr~~~ 80 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRRLGHSLREKR 80 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccccchhhhHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999997643344566788999999999
Q ss_pred CcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCCCC-CC
Q 015347 203 YDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVP-RH 281 (408)
Q Consensus 203 YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~~p-~~ 281 (408)
||++||++++ ++++++++++|++.|+||. +.....++++....+.. ...|.+++|++++..+|....... ..
T Consensus 81 yD~vidl~~~-~~s~~l~~~~~~~~rig~~-----~~~~~~~~~~~~~~~~~-~~~h~~~~~~~l~~~~~~~~~~~~~~~ 153 (348)
T PRK10916 81 YDRAYVLPNS-FKSALVPFFAGIPHRTGWR-----GEMRYGLLNDLRVLDKE-AFPLMVERYVALAYDKGVMRTAADLPQ 153 (348)
T ss_pred CCEEEECCCc-HHHHHHHHHcCCCeEeecc-----cCccccccccccccCcc-cCcHHHHHHHHHhcccccccccccCCC
Confidence 9999999998 9999999999999999997 33333344443221221 125889999999876654211000 01
Q ss_pred CCCCCccccCHHHHHHHHHHHHhhCCC-CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEeCC
Q 015347 282 PVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPH 359 (408)
Q Consensus 282 ~~p~~~i~is~~~~~~a~~~l~~~g~~-~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvligg 359 (408)
+...+.+.+++++.+.+ ....++. ++++|+||||+++.. .|+||.|+|++||+.|...+ ++|++||
T Consensus 154 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~i~pga~~~~---------~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg 221 (348)
T PRK10916 154 PLLWPQLQVSEGEKSET---CAAFSLSSERPIIGFCPGAEFGP---------AKRWPHYHYAELAQQLIDEGYQVVLFGS 221 (348)
T ss_pred CcCCCccccCHHHHHHH---HHHcCCCCCCCEEEEeCCCCCcc---------ccCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 12233555666554433 2233433 568999999998632 48999999999999998665 8999999
Q ss_pred cchHHHHHHHHhcCC--------CccccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 360 EKEREGVEDVVGDDA--------SIVFITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 360 p~E~e~~~~I~~~~~--------~~~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
|+|++.+++|.+... ++...+++.|+++ |++|+++|||||||||||+|.
T Consensus 222 ~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDTGp~HlAaA~ 279 (348)
T PRK10916 222 AKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDSGLMHVAAAL 279 (348)
T ss_pred HHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEecCChHHHHHHHh
Confidence 999999999876542 1222456799999 999999999999999999973
No 2
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=100.00 E-value=2.2e-47 Score=383.21 Aligned_cols=267 Identities=16% Similarity=0.113 Sum_probs=214.0
Q ss_pred CCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCC--CCChHHHHHHHHH
Q 015347 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD--WPEPAEYTDILGV 197 (408)
Q Consensus 120 ~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~--~~~~~~~~~l~~~ 197 (408)
.+++|||||++++|||+||++|++++||++||+++|||++.+.++++++++|+||+|+.++++.. +..+..+++++++
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~~~~~~~~~~~~~~l~~~ 82 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAGASEKIKNFFSLIKV 82 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999997642 1234567889999
Q ss_pred hhcCCCcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCC
Q 015347 198 MKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRS 277 (408)
Q Consensus 198 LR~~~YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~ 277 (408)
||+++||++||++.+ ++++++++++|++.||||...........+++++.++.. . .|.+++|+++++.+|+.
T Consensus 83 lr~~~yD~vidl~~~-~~s~ll~~l~~a~~rig~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~~~~~ll~~lg~~--- 154 (352)
T PRK10422 83 LRANKYDLIVNLTDQ-WMVALLVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQ-G---GHIVESNLSVLTPLGLS--- 154 (352)
T ss_pred HhhCCCCEEEEcccc-hHHHHHHHHhCCCeEEeeccccccchhHHHHhcccCCCC-C---cchHHhhHhHHhhcCCC---
Confidence 999999999999988 899999999999999999733221111224667765422 2 58899999999999983
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEE
Q 015347 278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFV 356 (408)
Q Consensus 278 ~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvl 356 (408)
...+.+.+.+.+++.+.+++.+...+. .+++|+||||+++.. |+||.|+|++||+.|.+++ ++++
T Consensus 155 ---~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~i~pga~~~~----------K~Wp~e~fa~l~~~L~~~~~~vvl 220 (352)
T PRK10422 155 ---SLVKETTMSYRPESWKRMRRQLDHLGV-TQNYVVIQPTARQIF----------KCWDNDKFSAVIDALQARGYEVVL 220 (352)
T ss_pred ---CCCCcceeecCHHHHHHHHHHHHhcCC-CCCeEEEecCCCccc----------cCCCHHHHHHHHHHHHHCCCeEEE
Confidence 122345666677666666555555544 358999999998864 8999999999999998766 8999
Q ss_pred eCCcchH--HHHHHHHhcCC-----CccccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 357 IPHEKER--EGVEDVVGDDA-----SIVFITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 357 iggp~E~--e~~~~I~~~~~-----~~~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
+|||+|+ +.+++|.+... ++...+++.|+++ |++|+++|||||||||||+|.
T Consensus 221 ~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSGp~HlAaA~ 280 (352)
T PRK10422 221 TSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSAPAHIAAAV 280 (352)
T ss_pred EcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCHHHHHHHHc
Confidence 9998654 45577776432 1223456799999 999999999999999999973
No 3
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=100.00 E-value=8.2e-47 Score=377.47 Aligned_cols=266 Identities=18% Similarity=0.120 Sum_probs=214.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCC---CCChHHHHHHHHHhhc
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD---WPEPAEYTDILGVMKN 200 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~---~~~~~~~~~l~~~LR~ 200 (408)
|||||++++|||+||++|++++||++||+++||||+.+.++++++.+|+||+|+.++.+.. +..+..+++++++||+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~~~~l~~~lr~ 80 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKAKAGERKLANQFHLIKVLRA 80 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhhcchHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999986532 2234567889999999
Q ss_pred CCCcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCCCCC
Q 015347 201 RYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPR 280 (408)
Q Consensus 201 ~~YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~~p~ 280 (408)
++||++||++.+ .+++++++++|++.||||.++.........++++.+..... ...|.+++|+++++.+|++.
T Consensus 81 ~~yD~vidl~~~-~~s~ll~~l~~a~~riG~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~l~ll~~lg~~~----- 153 (344)
T TIGR02201 81 NRYDLVVNLTDQ-WMVAILVKLLNARVKIGFDYPKRRSAFWRKSFTALAPLQGG-NTLHTVEQNLSVLTPLGLDS----- 153 (344)
T ss_pred CCCCEEEECCcc-hHHHHHHHhcCCCeEEeecCCCcchhHHHHHhccccCCCCC-CccchHhhhhhHHhhcCCCC-----
Confidence 999999999988 89999999999999999974322111222356665543322 12588999999999999831
Q ss_pred CCCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEeCC
Q 015347 281 HPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPH 359 (408)
Q Consensus 281 ~~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvligg 359 (408)
..+.+.+.+++++.+.++..+.+.+. .+++|+||||+++.. |+||.|+|++||+.|.+++ +++++|+
T Consensus 154 -~~~~~~l~~~~~~~~~~~~~l~~~~~-~~~~i~i~p~a~~~~----------K~Wp~e~~~~l~~~l~~~~~~ivl~g~ 221 (344)
T TIGR02201 154 -LVKQTRMSYPPADWKAMRALLDEAGV-GQNYIVIQPTSRWFF----------KCWDNDRFSALIDALHARGYEVVLTSG 221 (344)
T ss_pred -CCCceeeecCHHHHHHHHHHHHhcCC-CCCEEEEeCCCCccc----------cCCCHHHHHHHHHHHHhCCCeEEEecC
Confidence 12345677888887777777766655 468999999998764 8999999999999998766 8999999
Q ss_pred cc--hHHHHHHHHhcCCC-----ccccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 360 EK--EREGVEDVVGDDAS-----IVFITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 360 p~--E~e~~~~I~~~~~~-----~~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
|+ |++.+++|...+.. +...++++|+++ |++|+++|||||||||||+|.
T Consensus 222 p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSGp~HlAaA~ 278 (344)
T TIGR02201 222 PDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSVPMHMAAAL 278 (344)
T ss_pred CCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCHHHHHHHHc
Confidence 86 55678888765432 222356799999 999999999999999999973
No 4
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=100.00 E-value=5.5e-46 Score=369.85 Aligned_cols=262 Identities=17% Similarity=0.129 Sum_probs=210.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCCC
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYY 203 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~Y 203 (408)
|||||++++|||+||++|++++||++||+++||||+.+.++++++++|+||+|+.++.+..+..+..+++++++||+++|
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~lr~~~y 80 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLGHGALELTERRRLGRSLREERY 80 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCcccchhhhHHHHHHHHHhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999876543455677899999999999
Q ss_pred cEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCCCCCCCC
Q 015347 204 DMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPV 283 (408)
Q Consensus 204 DlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~~p~~~~ 283 (408)
|++|+++++ ++++++++++|++.|+||. ......++++....... ...|.+++|++++..+|.... ...
T Consensus 81 D~vi~l~~~-~~s~ll~~~~~~~~riG~~-----~~~~~~~~~~~~~~~~~-~~~h~~~~~~~l~~~~~~~~~----~~~ 149 (334)
T TIGR02195 81 DQAIVLPNS-LKSALIPFFAGIPHRTGWR-----GEMRYGLLNDVRALDKE-RLPLMVERYIALAYDKGQDLP----QPL 149 (334)
T ss_pred CEEEECCCC-HHHHHHHHHcCCCceeeec-----CCCcceecccCcCCCcc-cccHHHHHHHHHhccccCCCC----CCC
Confidence 999999998 9999999999999999997 33333456665432222 124789999998877765211 112
Q ss_pred CCCccccCHHHHHHHHHHHHhhCCC-CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEeCCcc
Q 015347 284 PPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEK 361 (408)
Q Consensus 284 p~~~i~is~~~~~~a~~~l~~~g~~-~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvliggp~ 361 (408)
+.+.+.+++++.+.+ ..+.++. ++++|+||||+++.. .|+||.|+|++|++.|.+.+ +++++|+|+
T Consensus 150 ~~p~l~~~~~~~~~~---~~~~~~~~~~~~i~i~pga~~~~---------~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~ 217 (334)
T TIGR02195 150 PRPQLQVSPAEQAAA---LAKFGLDTERPIIAFCPGAEFGP---------AKRWPHEHYAELAKRLIDQGYQVVLFGSAK 217 (334)
T ss_pred CCCcccCCHHHHHHH---HHHcCCCCCCCEEEEcCCCCCCc---------cCCCCHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 344566666654443 3344554 468999999997632 48999999999999998766 899999999
Q ss_pred hHHHHHHHHhcCCC----ccccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 362 EREGVEDVVGDDAS----IVFITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 362 E~e~~~~I~~~~~~----~~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
|++.+++|.....+ +...+++.|+++ |++|+++|||||||||||+|.
T Consensus 218 e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~~DSGp~HlAaA~ 269 (334)
T TIGR02195 218 DHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAKAVVTNDSGLMHVAAAL 269 (334)
T ss_pred hHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCCEEEeeCCHHHHHHHHc
Confidence 99999998765433 223456799999 999999999999999999973
No 5
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=100.00 E-value=2.5e-44 Score=356.66 Aligned_cols=258 Identities=14% Similarity=0.127 Sum_probs=199.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCC-------hHHHHHHH
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPE-------PAEYTDIL 195 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~-------~~~~~~l~ 195 (408)
||||||++++|||+||++|++++||++||+++|||||.+.++++++.+|+||+|+.++.+. |.. ...+.+++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVDRVIPVAIRR-WRKAWFSAPIRAERKAFR 79 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCccEEEeechhH-hhhcccchhHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999998542 111 13567889
Q ss_pred HHhhcCCCcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHH-HHcCCC
Q 015347 196 GVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV-DWLGRP 274 (408)
Q Consensus 196 ~~LR~~~YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL-~~LGi~ 274 (408)
++||+++||++||++.. .+++++.++++++.|+||...........+++++.+..... .|.+++|++++ +.+|++
T Consensus 80 ~~lr~~~yD~vidl~~~-~~s~~l~~~~~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~l~~~~lg~~ 155 (322)
T PRK10964 80 EALQAEQYDAVIDAQGL-VKSAALVTRLAHGVKHGMDWQSAREPLASLFYNRRHHIAKQ---QHAVERTRELFAKSLGYS 155 (322)
T ss_pred HHHhccCCCEEEEccch-HHHHHHHHHhcCCcEecCCCCcccchHhHhhccCccCCCcc---cCHHHHHHHHHHHHcCCC
Confidence 99999999999999988 88888877777778999972211112234677776654333 68899999987 688873
Q ss_pred CCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-C
Q 015347 275 FRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-P 353 (408)
Q Consensus 275 ~~~~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~ 353 (408)
.. ... .+....+..+.+.....++||+++||+++. .|+||.|+|++||+.|.+++ +
T Consensus 156 ~~------~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~----------~k~Wp~e~~a~li~~l~~~~~~ 212 (322)
T PRK10964 156 KP------QTQ-------GDYAIAQHFLTNLPADAGPYLVFLHATTRD----------DKHWPEAHWRELIGLLAPSGLR 212 (322)
T ss_pred cc------CCc-------cchhhhhhhcccccccCCCeEEEEeCCCcc----------cccCCHHHHHHHHHHHHHCCCe
Confidence 11 110 111122233333333356899888888765 38899999999999998766 7
Q ss_pred EEEe-CCcchHHHHHHHHhcCCCcc--ccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 354 LFVI-PHEKEREGVEDVVGDDASIV--FITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 354 vvli-ggp~E~e~~~~I~~~~~~~~--~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
++++ |+++|++.+++|.+.+.... ..+++.|+++ |++||++|||||||||||+|.
T Consensus 213 ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I~nDSGp~HlA~A~ 271 (322)
T PRK10964 213 IKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVVSVDTGLSHLTAAL 271 (322)
T ss_pred EEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEEecCCcHHHHHHHh
Confidence 8886 78889999999987654322 2456799999 999999999999999999973
No 6
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-43 Score=354.12 Aligned_cols=264 Identities=18% Similarity=0.170 Sum_probs=208.2
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcC
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~ 201 (408)
+||||||++++|||+||++|+++.||++||+|+|||++.+.++++++.+|+|++|+.++.+.....+.+++++.+.||++
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~~~~~~~~~~~~l~~~lr~~ 80 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKKKKGLGLKERLALLRTLRKE 80 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccccccccchHHHHHHHHHhhcc
Confidence 58999999999999999999999999999999999999999999999999999999876532213478899999999999
Q ss_pred CCcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCCCCCC
Q 015347 202 YYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRH 281 (408)
Q Consensus 202 ~YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~~p~~ 281 (408)
+||++||+++. ++++++.++++++.|+||.+. ..+.++++........+..+|++++|+.+++.+|..... .
T Consensus 81 ~yD~vidl~~~-~ksa~l~~~~~~~~r~g~~~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~ 152 (334)
T COG0859 81 RYDAVIDLQGL-LKSALLALLLGIPFRIGFDKK----SARELLLNKFYPRLDKPEGQHVVERYLALLEDLGLYPPP---E 152 (334)
T ss_pred CCCEEEECccc-HHHHHHHHHhCCCcccccccc----cchhHHHHHhhhccCcccchhHHHHHHHHHHHhcCCCCC---C
Confidence 99999999999 999999999999999999842 122223333222111112389999999999998873221 1
Q ss_pred CCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEeCCc
Q 015347 282 PVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHE 360 (408)
Q Consensus 282 ~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvliggp 360 (408)
+...+.+.....+.... +.+.+ ++||+|+||++... .|+||.|+|++||+.|..++ +|+++|++
T Consensus 153 ~~~~~~~~~~~~~~~~~---~~~~~---~~~i~i~pg~s~~~---------~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~ 217 (334)
T COG0859 153 PQLDFPLPRPPIELAKN---LAKFD---RPYIVINPGASRGS---------AKRWPLEHYAELAELLIAKGYQVVLFGGP 217 (334)
T ss_pred CccCcccccCHHHHHHH---HHhcC---CCeEEEeccccccc---------cCCCCHHHHHHHHHHHHHCCCEEEEecCh
Confidence 11112233333322221 12111 68999999965532 59999999999999999998 89999999
Q ss_pred chHHHHHHHHhcCCC---ccccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 361 KEREGVEDVVGDDAS---IVFITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 361 ~E~e~~~~I~~~~~~---~~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
+|++.+++|.+.+.+ +...+++.|+++ |++||++|||||||||||+|.
T Consensus 218 ~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg~~HlAaA~ 269 (334)
T COG0859 218 DEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGNDSGPMHLAAAL 269 (334)
T ss_pred HHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEEEccCChHHHHHHHc
Confidence 999999999987765 334567799999 999999999999999999984
No 7
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=100.00 E-value=3.9e-43 Score=347.02 Aligned_cols=260 Identities=15% Similarity=0.145 Sum_probs=198.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCC------hHHHHHHHHH
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPE------PAEYTDILGV 197 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~------~~~~~~l~~~ 197 (408)
|||||++++|||+||++|++++||++||+++|||+|.+.++++++++|+||+|+.++.+..... ...+..+.+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVALRRWRKTLFSAATWREIKALRAL 80 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEechhhhhhccccchhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999986531111 1234556778
Q ss_pred hhcCCCcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHH-HHcCCCCC
Q 015347 198 MKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV-DWLGRPFR 276 (408)
Q Consensus 198 LR~~~YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL-~~LGi~~~ 276 (408)
||+++||++||++.+ .+++++++++++ .|+||...........+++++.+..... .|.+++|.+++ +.+|++..
T Consensus 81 lr~~~yD~vi~~~~~-~~s~~l~~~~~~-~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~ll~~~lg~~~~ 155 (319)
T TIGR02193 81 LRAERYDAVIDAQGL-IKSALVARMARG-PRHGFDWRSAREPLASLFYNKRVGISYQ---QHAVERNRKLFALALGYPPP 155 (319)
T ss_pred Hhhccchhhhhhhhh-HHHHHHHHhhCC-ceecCCCCccccHHHHHHhcCccCCCcc---cCHHHHHHHHHHHHcCCCCC
Confidence 999999999999988 899999999984 5999973221111223566766554433 68899999987 47888420
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEE
Q 015347 277 SVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLF 355 (408)
Q Consensus 277 ~~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vv 355 (408)
....+.+.++.++. ...+. . ..++++|++|||+++. .|+||.|+|++|++.|.+++ ++|
T Consensus 156 -----~~~~~~~~~~~~~~---~~~~~-~-~~~~~~i~i~~gas~~----------~K~wp~e~~~~l~~~l~~~~~~~v 215 (319)
T TIGR02193 156 -----IAETIDYGLARRAA---VAFLG-H-ALPAPYAVLLHATSRD----------DKTWPEERWRELARLLLARGLQIV 215 (319)
T ss_pred -----CCCccccCccchhh---hhhhh-c-cCCCCEEEEEeCCCcc----------cCCCCHHHHHHHHHHHHHCCCeEE
Confidence 11123444444332 11221 1 1246899999999875 48999999999999998766 777
Q ss_pred Ee-CCcchHHHHHHHHhcCCCc--cccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 356 VI-PHEKEREGVEDVVGDDASI--VFITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 356 li-ggp~E~e~~~~I~~~~~~~--~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
++ |+++|++.+++|....++. ...+++.|+++ |++|+++|||||||||||+|.
T Consensus 216 l~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~I~~DSgp~HlAaa~ 272 (319)
T TIGR02193 216 LPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAVVGVDTGLTHLAAAL 272 (319)
T ss_pred EeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEEEeCCChHHHHHHHc
Confidence 76 6788989998988755432 23456799999 999999999999999999974
No 8
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=4.7e-37 Score=298.38 Aligned_cols=209 Identities=20% Similarity=0.201 Sum_probs=178.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCCC
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYY 203 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~Y 203 (408)
|||||+.++|||+|+++|++++||++||+++|||++++.++++++.+|+||+|+.++.+..+..+..+++++++||+++|
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKHGKLGLGARRRLARALRRRRY 80 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcccccchHHHHHHHHHHhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999876423567788999999999999
Q ss_pred cEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCCCCCCCC
Q 015347 204 DMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPV 283 (408)
Q Consensus 204 DlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~~p~~~~ 283 (408)
|++|+++.+ .++++++++++++.|+||. ......++++.+
T Consensus 81 D~vi~~~~~-~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~---------------------------------- 120 (279)
T cd03789 81 DLAIDLQGS-LRSALLPFLAGAPRRIGFD-----GERRRGLLTDVV---------------------------------- 120 (279)
T ss_pred CEEEECCCc-cHHHHHHHHhCCCeEEEec-----CCcccccccccc----------------------------------
Confidence 999999999 8888999999999999997 222111111100
Q ss_pred CCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEeCCcch
Q 015347 284 PPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKE 362 (408)
Q Consensus 284 p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvliggp~E 362 (408)
+++|++|||+++.. |+||.|+|++|++.|.+++ +++++|+++|
T Consensus 121 --------------------------~~~i~i~~~~~~~~----------k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e 164 (279)
T cd03789 121 --------------------------KPVVVLPPGASGPA----------KRWPAERFAALADRLLARGARVVLTGGPAE 164 (279)
T ss_pred --------------------------CCEEEECCCCCCcc----------ccCCHHHHHHHHHHHHHCCCEEEEEechhh
Confidence 47999999998764 8899999999999999876 8899999999
Q ss_pred HHHHHHHHhcCC--Cc---cccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 363 REGVEDVVGDDA--SI---VFITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 363 ~e~~~~I~~~~~--~~---~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
++.++++..... +. ...+++.|+++ +++||++||+|||+||||+|.
T Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Dsg~~HlA~a~ 216 (279)
T cd03789 165 RELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDSGPMHLAAAL 216 (279)
T ss_pred HHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCCHHHHHHHHc
Confidence 999988876541 21 12345689999 999999999999999999873
No 9
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=99.96 E-value=1.3e-28 Score=234.36 Aligned_cols=192 Identities=17% Similarity=0.238 Sum_probs=132.2
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHH
Q 015347 191 YTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDW 270 (408)
Q Consensus 191 ~~~l~~~LR~~~YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~ 270 (408)
+++++++||+++||+|||++.+ .++++++++++++.|+||.... ....++++..+..... .|.+++|+++++.
T Consensus 1 ~~~l~~~Lr~~~yD~vid~~~~-~~s~~l~~~~~a~~riG~~~~~---~~~~~~~~~~~~~~~~---~~~v~~~~~ll~~ 73 (247)
T PF01075_consen 1 ILALIKKLRKEKYDLVIDLQGS-FRSALLARLSGAKIRIGFGKDD---RGRSLFYNRKVDRPPN---KHMVDRYLSLLSE 73 (247)
T ss_dssp HHHHHHHHCTSB-SEEEE-S-S-HHHHHHTCCCSBSEEEEE-TTT---SGGGGGESEEE-TTSS---SSHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCEEEECCCC-ccHHHHHHHHhhccccccCccc---hhhhhccccccccccc---chHHHHHHHHHHH
Confidence 4689999999999999999999 9999999999999999998321 1224556655654433 5788888888864
Q ss_pred -cCCCCCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHh
Q 015347 271 -LGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLR 349 (408)
Q Consensus 271 -LGi~~~~~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~ 349 (408)
+|++ .....+.+.+++++.+.++..+. ..++++|+||||+++.. |+||.|+|++|++.|.
T Consensus 74 ~~~~~------~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~i~i~~~a~~~~----------k~wp~e~~~~l~~~l~ 134 (247)
T PF01075_consen 74 LLGIP------YPSTKPELPLSEEEEAAARELLK---SKDKPYIGINPGASWPS----------KRWPAEKWAELIERLK 134 (247)
T ss_dssp HHTS-------SSSSSS----THHHHTTHHTTTT----TTSSEEEEE---SSGG----------GS--HHHHHHHHHHHC
T ss_pred hcCCC------CCCCCcCCcCCHHHHHHHHHhhh---hccCCeEEEeecCCCcc----------ccCCHHHHHHHHHHHH
Confidence 6773 11234566777776665544432 23568999999999864 8899999999999999
Q ss_pred hCC-CEEEeCCcch--HHHHHHHHhcCCC----ccccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347 350 EFR-PLFVIPHEKE--REGVEDVVGDDAS----IVFITTPGQLQI-QQPYNLQTRVKSPALHCSALS 408 (408)
Q Consensus 350 ~~~-~vvliggp~E--~e~~~~I~~~~~~----~~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~ 408 (408)
+++ +|+++|+++| ++.++++...... +...+++.|+++ |++|+++||+||||||||+|.
T Consensus 135 ~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a~~~I~~Dtg~~HlA~a~ 201 (247)
T PF01075_consen 135 ERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRADLVIGNDTGPMHLAAAL 201 (247)
T ss_dssp CCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTSSEEEEESSHHHHHHHHT
T ss_pred hhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcCCEEEecCChHHHHHHHH
Confidence 887 8999999988 5666677654431 112356699999 999999999999999999974
No 10
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.74 E-value=7.2e-07 Score=90.58 Aligned_cols=258 Identities=14% Similarity=0.103 Sum_probs=135.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCc---------hHhhhc-C---CCCcEEEEecCCCCCCCh-
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG---------KQTFEL-N---KNVRWANVYDLDDDWPEP- 188 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~---------~~lle~-~---P~Vd~Vi~~d~k~~~~~~- 188 (408)
||||+| .+.-=|.+...|++++|++ .++.+..+++.... ..+.+. . +.++ +.++.... ..+
T Consensus 1 ~ki~~v-~GtRpe~iklapv~~~l~~-~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 75 (365)
T TIGR03568 1 KKICVV-TGTRADYGLLRPLLKALQD-DPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIE--ILLDSDSN-AGMA 75 (365)
T ss_pred CeEEEE-EecChhHHHHHHHHHHHhc-CCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccc--cccCCCCC-CCHH
Confidence 567655 4566789999999999996 46778777765433 122211 2 2222 11221111 122
Q ss_pred ----HHHHHHHHHhhcCCCcEEEEcCCC--ChHHHHHHHHhCCCeEEEecCCCcccccc-----cccceeeeccCcCCcc
Q 015347 189 ----AEYTDILGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARDRVSYIYPNVNAAGA-----GLLLSETFTAESMNLS 257 (408)
Q Consensus 189 ----~~~~~l~~~LR~~~YDlvIdl~~~--~~~sall~~laga~~RIG~~~~~~~~~~~-----~~~lt~~v~~~~~~~~ 257 (408)
..+..+.+.++++++|+++..... ..-.++.++..|+|. ++........+. ....++.....-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv--~HveaG~rs~~~~eE~~r~~i~~la~l~f~--- 150 (365)
T TIGR03568 76 KSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPI--AHIHGGEVTEGAIDESIRHAITKLSHLHFV--- 150 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcE--EEEECCccCCCCchHHHHHHHHHHHhhccC---
Confidence 123556677888999999987533 124577788888874 332100000000 0000000000000
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCCCCCCCCcc--ccCHHHHHHHHHHHHhhCCC-CCCe--EEEEcCCCCchhhccCCCCC
Q 015347 258 ERGYNMYEQMVDWLGRPFRSVPRHPVPPLRV--SISRRLKEVVAEKYKNAGAE-QGKY--IVIHGIESDSKASMQSRGDT 332 (408)
Q Consensus 258 ~h~~~~y~~lL~~LGi~~~~~p~~~~p~~~i--~is~~~~~~a~~~l~~~g~~-~~~~--Ivihpgas~~~~~~~~~g~~ 332 (408)
..+.+.+-|...|++...+-..-.+.... ..... .....++++++. .++| |.+||+++.
T Consensus 151 --~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~---~~~~~~~~lgl~~~~~~vlvt~Hp~~~~----------- 214 (365)
T TIGR03568 151 --ATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLL---SKEELEEKLGIDLDKPYALVTFHPVTLE----------- 214 (365)
T ss_pred --CCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhcc---CHHHHHHHhCCCCCCCEEEEEeCCCccc-----------
Confidence 00122222233455211100000010000 00000 012345566765 3477 678888652
Q ss_pred CCCCCHHHHHHHHHHHhhCC-CEEEe---CCcchHHHHHHHHhc---CCCccccC--CHHHHHH-hcccCEEEeCCChHH
Q 015347 333 DSLLPIQVWAEIANGLREFR-PLFVI---PHEKEREGVEDVVGD---DASIVFIT--TPGQLQI-QQPYNLQTRVKSPAL 402 (408)
Q Consensus 333 ~K~WP~e~waeLa~~L~~~~-~vvli---ggp~E~e~~~~I~~~---~~~~~~i~--~~~eLaA-i~~adl~I~nDSGpm 402 (408)
+.|+.++|.++++.|.+.. +++++ ++|.+++..+.+... ..++.++. ...++.+ +++|+++||+|||.+
T Consensus 215 -~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi 293 (365)
T TIGR03568 215 -KESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGI 293 (365)
T ss_pred -ccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcChhHH
Confidence 5699999999999998765 44444 446665444444432 23343333 2378899 999999999999999
Q ss_pred HHhcC
Q 015347 403 HCSAL 407 (408)
Q Consensus 403 HLAaa 407 (408)
|.|++
T Consensus 294 ~EA~~ 298 (365)
T TIGR03568 294 IEAPS 298 (365)
T ss_pred Hhhhh
Confidence 99986
No 11
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.36 E-value=1.4e-05 Score=82.81 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=35.9
Q ss_pred cEEEEEcC---CChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch
Q 015347 123 RRCCCIIS---GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK 164 (408)
Q Consensus 123 ~rILIIr~---~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~ 164 (408)
|||||+-. +..||-.+.+.+|++||+..|+++|+++..-...
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~ 45 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVS 45 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccc
Confidence 68888765 5789999999999999999999999999844333
No 12
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.86 E-value=7.9e-05 Score=75.06 Aligned_cols=103 Identities=12% Similarity=-0.058 Sum_probs=64.6
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCC---CC----hHHHHHH
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDW---PE----PAEYTDI 194 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~---~~----~~~~~~l 194 (408)
+|||+|+.-+.-||+..+. ++++||+.+|+++|..+..+....-. .+..-....++...-+ .. ...+..+
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 77 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAG--CESLFDMEELAVMGLVEVLPRLPRLLKIRRRL 77 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCC--CccccCHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999997 99999999999998888765332211 1111011111111100 11 2344567
Q ss_pred HHHhhcCCCcEEEEcCCC--ChHHHHHHHHhCCCe
Q 015347 195 LGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARD 227 (408)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~--~~~sall~~laga~~ 227 (408)
.+.||+.++|+++..... ..+.+..+...|+|.
T Consensus 78 ~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~ 112 (380)
T PRK00025 78 KRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPT 112 (380)
T ss_pred HHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCE
Confidence 777889999999986432 123344456667773
No 13
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.22 E-value=0.14 Score=52.55 Aligned_cols=100 Identities=16% Similarity=0.056 Sum_probs=64.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEE-CCCchHhhh-cCCCCcEEEEecCCCCCCChHHHHHHHHHhhc
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIA-SARGKQTFE-LNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv-~~~~~~lle-~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~ 200 (408)
.+.+-+....+|++....|+++.|++++|+.+|.+.+ .+...++.+ ..+.-..+..++.+.. ..+.+.|++
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~-------~~~~~~l~~ 122 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLP-------GAVRRFLRF 122 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcH-------HHHHHHHHh
Confidence 4456688899999999999999999999999886664 344455554 2232223555554321 345556788
Q ss_pred CCCcEEEEcCCCChHHH-HHHHHhCCCeEE
Q 015347 201 RYYDMVLSTKLAGLGHA-AFLFMTTARDRV 229 (408)
Q Consensus 201 ~~YDlvIdl~~~~~~sa-ll~~laga~~RI 229 (408)
.++|+++......+-.. ..+...|++.-+
T Consensus 123 ~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl 152 (425)
T PRK05749 123 WRPKLVIIMETELWPNLIAELKRRGIPLVL 152 (425)
T ss_pred hCCCEEEEEecchhHHHHHHHHHCCCCEEE
Confidence 89999987644423222 223455677544
No 14
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.032 Score=57.26 Aligned_cols=244 Identities=14% Similarity=0.126 Sum_probs=127.7
Q ss_pred EEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEE-CCCchHhh-hcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCC
Q 015347 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIA-SARGKQTF-ELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRY 202 (408)
Q Consensus 125 ILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv-~~~~~~ll-e~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~ 202 (408)
..-+....+|+++..+|+|++|+++||+..|.+-+ .+.+++.+ +..+....+..++.+.. ...-+-|+..+
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~-------~~v~rFl~~~~ 123 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP-------IAVRRFLRKWR 123 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch-------HHHHHHHHhcC
Confidence 34477789999999999999999999999999887 66666554 44554334444444332 23345567788
Q ss_pred CcEEEEcCCCChHHHHH-HHHhCCCeEEEecCCCc-c--cccc-cccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCC
Q 015347 203 YDMVLSTKLAGLGHAAF-LFMTTARDRVSYIYPNV-N--AAGA-GLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRS 277 (408)
Q Consensus 203 YDlvIdl~~~~~~sall-~~laga~~RIG~~~~~~-~--~~~~-~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~ 277 (408)
.|++|.+...-|-..+. +...|+|.-+--.+-+. + ++.. ..++...+..-..-..+. +...+=+..||...
T Consensus 124 P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQs--e~D~~Rf~~LGa~~-- 199 (419)
T COG1519 124 PKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQS--EEDAQRFRSLGAKP-- 199 (419)
T ss_pred CCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecC--HHHHHHHHhcCCcc--
Confidence 99999987774544444 44567775443220000 0 1100 011111111000000011 11223334677632
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CE--
Q 015347 278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PL-- 354 (408)
Q Consensus 278 ~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~v-- 354 (408)
+.-.-.-...+..++......+....+.+.. ++.++. +|+... -.|-|.++.+.|.++. ..
T Consensus 200 v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~-r~v~ia--aSTH~G-------------Eeei~l~~~~~l~~~~~~~ll 263 (419)
T COG1519 200 VVVTGNLKFDIEPPPQLAAELAALRRQLGGH-RPVWVA--ASTHEG-------------EEEIILDAHQALKKQFPNLLL 263 (419)
T ss_pred eEEecceeecCCCChhhHHHHHHHHHhcCCC-CceEEE--ecCCCc-------------hHHHHHHHHHHHHhhCCCceE
Confidence 1000111223334444444444444455443 343332 222321 4678999999998887 33
Q ss_pred EEeC-CcchHHHHHHHHhcC---------C-------CccccCCHHHHHH-hcccCEEE
Q 015347 355 FVIP-HEKEREGVEDVVGDD---------A-------SIVFITTPGQLQI-QQPYNLQT 395 (408)
Q Consensus 355 vlig-gp~E~e~~~~I~~~~---------~-------~~~~i~~~~eLaA-i~~adl~I 395 (408)
++++ +|+--+.+++.+... . ++.+..++|||.. .+.+|+.+
T Consensus 264 IlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAF 322 (419)
T COG1519 264 ILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAF 322 (419)
T ss_pred EEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEE
Confidence 3343 344344555554321 0 1222356699999 88888754
No 15
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.79 E-value=0.16 Score=51.22 Aligned_cols=242 Identities=14% Similarity=0.131 Sum_probs=128.5
Q ss_pred cEEEE-EcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch--HhhhcCCCCcEEEEecCCCC-----CCChHHHHHH
Q 015347 123 RRCCC-IISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWANVYDLDDD-----WPEPAEYTDI 194 (408)
Q Consensus 123 ~rILI-Ir~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~--~lle~~P~Vd~Vi~~d~k~~-----~~~~~~~~~l 194 (408)
|||+| |.... -+-++-++|+.|+++ |-+|.+.++.... .+++ .-+++.+..=..... +.......++
T Consensus 1 MkIwiDi~~p~--hvhfFk~~I~eL~~~--GheV~it~R~~~~~~~LL~-~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l 75 (335)
T PF04007_consen 1 MKIWIDITHPA--HVHFFKNIIRELEKR--GHEVLITARDKDETEELLD-LYGIDYIVIGKHGDSLYGKLLESIERQYKL 75 (335)
T ss_pred CeEEEECCCch--HHHHHHHHHHHHHhC--CCEEEEEEeccchHHHHHH-HcCCCeEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 56666 33333 677788999999998 5577777765543 5555 446665543222221 0123345778
Q ss_pred HHHhhcCCCcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccc--cccceeeeccCcCCcchhHHHHHHHHHHHcC
Q 015347 195 LGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGA--GLLLSETFTAESMNLSERGYNMYEQMVDWLG 272 (408)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~--~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LG 272 (408)
++.+++.++|++|.. .+ ...+..+++.|+|. |.+....+..... .+-+++.+-.+. ++.. ..+..+|
T Consensus 76 ~~~~~~~~pDv~is~-~s-~~a~~va~~lgiP~-I~f~D~e~a~~~~~Lt~Pla~~i~~P~------~~~~--~~~~~~G 144 (335)
T PF04007_consen 76 LKLIKKFKPDVAISF-GS-PEAARVAFGLGIPS-IVFNDTEHAIAQNRLTLPLADVIITPE------AIPK--EFLKRFG 144 (335)
T ss_pred HHHHHhhCCCEEEec-Cc-HHHHHHHHHhCCCe-EEEecCchhhccceeehhcCCeeECCc------ccCH--HHHHhcC
Confidence 888899999999964 33 56777899999995 5555222111110 111222222221 1111 1223345
Q ss_pred CC--C---CCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHH
Q 015347 273 RP--F---RSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANG 347 (408)
Q Consensus 273 i~--~---~~~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~ 347 (408)
.. . .+..+.. .+.--+.+ ...++++|+...+||++-+.+..+. -. .+..+-..++++.
T Consensus 145 ~~~~i~~y~G~~E~a----yl~~F~Pd----~~vl~~lg~~~~~yIvvR~~~~~A~---y~------~~~~~i~~~ii~~ 207 (335)
T PF04007_consen 145 AKNQIRTYNGYKELA----YLHPFKPD----PEVLKELGLDDEPYIVVRPEAWKAS---YD------NGKKSILPEIIEE 207 (335)
T ss_pred CcCCEEEECCeeeEE----eecCCCCC----hhHHHHcCCCCCCEEEEEeccccCe---ee------cCccchHHHHHHH
Confidence 32 0 0110100 11100111 2457788887789999988764432 11 1233445689999
Q ss_pred HhhCCC-EEEeCCcch-HHHHHHHHhcCCCccccCCHHHHHH-hcccCEEEeCCChHHH
Q 015347 348 LREFRP-LFVIPHEKE-REGVEDVVGDDASIVFITTPGQLQI-QQPYNLQTRVKSPALH 403 (408)
Q Consensus 348 L~~~~~-vvliggp~E-~e~~~~I~~~~~~~~~i~~~~eLaA-i~~adl~I~nDSGpmH 403 (408)
|.+.+. ||+++..++ ++..+ ... +.+...+-+... +..||++|| |+|-|-
T Consensus 208 L~~~~~~vV~ipr~~~~~~~~~----~~~-~~i~~~~vd~~~Ll~~a~l~Ig-~ggTMa 260 (335)
T PF04007_consen 208 LEKYGRNVVIIPRYEDQRELFE----KYG-VIIPPEPVDGLDLLYYADLVIG-GGGTMA 260 (335)
T ss_pred HHhhCceEEEecCCcchhhHHh----ccC-ccccCCCCCHHHHHHhcCEEEe-CCcHHH
Confidence 988874 666665443 33322 222 221111123335 899999998 566654
No 16
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=96.64 E-value=0.073 Score=52.95 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=57.6
Q ss_pred EEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCC-chH-----hhhc--CCCCcEEEEecCCCC---CCChHHHHH
Q 015347 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR-GKQ-----TFEL--NKNVRWANVYDLDDD---WPEPAEYTD 193 (408)
Q Consensus 125 ILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~-~~~-----lle~--~P~Vd~Vi~~d~k~~---~~~~~~~~~ 193 (408)
||+| .+.-=|.+...|++++|+++ |+.++.+++... ..+ +++. ....+.-+....... -....-..+
T Consensus 2 i~~~-~gtr~~~~~~~pl~~~l~~~-~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (363)
T cd03786 2 ILVV-TGTRPEYIKLAPLIRALKKD-PGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIG 79 (363)
T ss_pred EEEE-EecCHHHHHHHHHHHHHhcC-CCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHH
Confidence 4433 45566888899999999987 899999776542 222 2221 222221222221111 001223466
Q ss_pred HHHHhhcCCCcEEEEcCCC--ChHHHHHHHHhCCCe
Q 015347 194 ILGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARD 227 (408)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~--~~~sall~~laga~~ 227 (408)
+.+.+++.++|+++..... ..-.++.+++.|+|.
T Consensus 80 l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPv 115 (363)
T cd03786 80 LEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPV 115 (363)
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCE
Confidence 7778888999999876322 122345566778774
No 17
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.50 E-value=0.55 Score=46.28 Aligned_cols=101 Identities=11% Similarity=-0.010 Sum_probs=61.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcC--CCCcEEEEecCC-----CCCCC-------hH
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN--KNVRWANVYDLD-----DDWPE-------PA 189 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~--P~Vd~Vi~~d~k-----~~~~~-------~~ 189 (408)
||||...+.=|++--...+.++|.++ +.++++++...... .+.. .+|+ +..++.. ..+.. +.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~--G~ev~v~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER--GAEVLFLGTKRGLE-ARLVPKAGIP-LHTIPVGGLRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC--CCEEEEEECCCcch-hhcccccCCc-eEEEEecCcCCCChHHHHHHHHHHHH
Confidence 58887777658888888999999988 56999998765422 2222 2343 3333321 11111 12
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCC-ChHHHHHHHHhCCCeE
Q 015347 190 EYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMTTARDR 228 (408)
Q Consensus 190 ~~~~l~~~LR~~~YDlvIdl~~~-~~~sall~~laga~~R 228 (408)
....+.+.++++++|+++..... +....+.+++.|++.-
T Consensus 77 ~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v 116 (350)
T cd03785 77 GVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLV 116 (350)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEE
Confidence 22345666888999999976432 2344555677777753
No 18
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.45 E-value=0.29 Score=46.98 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=56.8
Q ss_pred EEEEEcC--CChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhc--CCCCcEEEEecCCCCCCChHHHHHHHHHhh
Q 015347 124 RCCCIIS--GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL--NKNVRWANVYDLDDDWPEPAEYTDILGVMK 199 (408)
Q Consensus 124 rILIIr~--~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~--~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR 199 (408)
|||+|.. +.=|.......++++|.+. +.++.+++.......... ..+|. |+.+.....+..+..+.++.+.++
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~i~-v~~~~~~~~~~~~~~~~~~~~~~~ 77 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRD--RFEHVVISLTDRGELGEELEEAGVP-VYCLGKRPGRPDPGALLRLYKLIR 77 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhc--cceEEEEecCcchhhhHHHHhcCCe-EEEEecccccccHHHHHHHHHHHH
Confidence 4555554 3345666667889999654 447777765443332221 24564 655554443345666778888899
Q ss_pred cCCCcEEEEcCCCC-hHHHHHHHH
Q 015347 200 NRYYDMVLSTKLAG-LGHAAFLFM 222 (408)
Q Consensus 200 ~~~YDlvIdl~~~~-~~sall~~l 222 (408)
+.++|+++...... ....+..++
T Consensus 78 ~~~~div~~~~~~~~~~~~~~~~~ 101 (365)
T cd03807 78 RLRPDVVHTWMYHADLYGGLAARL 101 (365)
T ss_pred hhCCCEEEeccccccHHHHHHHHh
Confidence 99999998753331 333444444
No 19
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.41 E-value=0.3 Score=48.10 Aligned_cols=101 Identities=10% Similarity=-0.046 Sum_probs=62.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch--HhhhcCCCCcEEEEecCCCCC-CC-----------h
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWANVYDLDDDW-PE-----------P 188 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~--~lle~~P~Vd~Vi~~d~k~~~-~~-----------~ 188 (408)
|||+|+--+--|++-....++++|+++ +.++++++.+... .+++ ...++ +..++..... .. +
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv~~~~~~~~~~~~-~~g~~-~~~i~~~~~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWLGTKRGLEKRLVP-KAGIE-FYFIPVGGLRRKGSFRLIKTPLKLL 76 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEEeCCCcchhcccc-cCCCc-eEEEeccCcCCCChHHHHHHHHHHH
Confidence 589988888888888777999999987 3699999875432 2222 12333 3333322100 11 1
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCCC-hHHHHHHHHhCCCe
Q 015347 189 AEYTDILGVMKNRYYDMVLSTKLAG-LGHAAFLFMTTARD 227 (408)
Q Consensus 189 ~~~~~l~~~LR~~~YDlvIdl~~~~-~~sall~~laga~~ 227 (408)
..+.++.+.+|++++|+++...... ....+..++.|.+.
T Consensus 77 ~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~ 116 (348)
T TIGR01133 77 KAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPL 116 (348)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCE
Confidence 2234566668889999999875431 23344566677765
No 20
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.00 E-value=0.36 Score=46.09 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=57.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCC----CCCChHHHHHHHHHhh
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD----DWPEPAEYTDILGVMK 199 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~----~~~~~~~~~~l~~~LR 199 (408)
|||+|....-|.......+++.|++. +.+|++++......-......++ ++.++... .+........+.+.++
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~--g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAA--GYEVHVVAPPGDELEELEALGVK-VIPIPLDRRGINPFKDLKALLRLYRLLR 77 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhc--CCeeEEEecCCCcccccccCCce-EEeccccccccChHhHHHHHHHHHHHHH
Confidence 68999999889999999999999775 77999998665554222223343 34443322 1223344566777788
Q ss_pred cCCCcEEEEcC
Q 015347 200 NRYYDMVLSTK 210 (408)
Q Consensus 200 ~~~YDlvIdl~ 210 (408)
+.++|+++...
T Consensus 78 ~~~~dvv~~~~ 88 (359)
T cd03808 78 KERPDIVHTHT 88 (359)
T ss_pred hcCCCEEEEcc
Confidence 89999998764
No 21
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=95.96 E-value=0.35 Score=49.82 Aligned_cols=97 Identities=10% Similarity=0.062 Sum_probs=65.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHCCCcEEE---EEECCCchHhhhcCCCCcEEEEecCCCCCC--Ch------------HHH
Q 015347 129 ISGGVYENLLFFPAIQLLKDRYPGVLID---VIASARGKQTFELNKNVRWANVYDLDDDWP--EP------------AEY 191 (408)
Q Consensus 129 r~~~IGDvILttPvI~aLK~~yP~A~Id---vLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~--~~------------~~~ 191 (408)
-.+|-|+=++..-++++|++++|+++|. ||...+.-+ =+..|.+-....++.. ++. ++ ...
T Consensus 3 ~snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e-~~~ip~~g~~~~~~sg-g~~~~~~~~~~~~~~~gl~~~~ 80 (396)
T TIGR03492 3 LSNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ-NLGIPIIGPTKELPSG-GFSYQSLRGLLRDLRAGLVGLT 80 (396)
T ss_pred CCCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh-hCCCceeCCCCCCCCC-CccCCCHHHHHHHHHhhHHHHH
Confidence 4678899999999999999999999999 998776642 2223332233333322 221 11 122
Q ss_pred HHHHHHhhcC--CCcEEEEcCCCChHHHHHHHHhCCCeEE
Q 015347 192 TDILGVMKNR--YYDMVLSTKLAGLGHAAFLFMTTARDRV 229 (408)
Q Consensus 192 ~~l~~~LR~~--~YDlvIdl~~~~~~sall~~laga~~RI 229 (408)
+.-++.+|+. +.|++|.+.+- . ..+.+|++|+|.-+
T Consensus 81 ~~~~~~~~~~~~~p~~v~~~Gg~-v-~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 81 LGQWRALRKWAKKGDLIVAVGDI-V-PLLFAWLSGKPYAF 118 (396)
T ss_pred HHHHHHHHHHhhcCCEEEEECcH-H-HHHHHHHcCCCceE
Confidence 3334446777 99999998666 4 78889999999665
No 22
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=95.95 E-value=0.3 Score=49.21 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHhhCCCC-CCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhC-C-CEEEeCCcc--hHHHHHHHHhcCC-C
Q 015347 302 YKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREF-R-PLFVIPHEK--EREGVEDVVGDDA-S 375 (408)
Q Consensus 302 l~~~g~~~-~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~-~-~vvliggp~--E~e~~~~I~~~~~-~ 375 (408)
..+.++.+ +++|++.+|+-.. .| .+.++++.+.+. . ++++++|.+ .++.+++...... +
T Consensus 193 ~~~~~l~~~~~~il~~~G~~~~----------~k-----~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~ 257 (380)
T PRK13609 193 YNKYQLCPNKKILLIMAGAHGV----------LG-----NVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDA 257 (380)
T ss_pred HHHcCCCCCCcEEEEEcCCCCC----------Cc-----CHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCc
Confidence 45567764 4566666553221 12 345667766543 2 566665543 3455555544333 3
Q ss_pred ccccCCHHHHHH-hcccCEEEeCCChHH
Q 015347 376 IVFITTPGQLQI-QQPYNLQTRVKSPAL 402 (408)
Q Consensus 376 ~~~i~~~~eLaA-i~~adl~I~nDSGpm 402 (408)
+.+.....++.. ++.||++|+ ++|++
T Consensus 258 v~~~g~~~~~~~l~~~aD~~v~-~~gg~ 284 (380)
T PRK13609 258 LKVFGYVENIDELFRVTSCMIT-KPGGI 284 (380)
T ss_pred EEEEechhhHHHHHHhccEEEe-CCCch
Confidence 332222256777 999999997 56654
No 23
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=95.72 E-value=0.53 Score=45.92 Aligned_cols=83 Identities=7% Similarity=0.027 Sum_probs=47.4
Q ss_pred HhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC---CEEEeCCcchHHHHHHHHhcC---CCc
Q 015347 303 KNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASI 376 (408)
Q Consensus 303 ~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~---~vvliggp~E~e~~~~I~~~~---~~~ 376 (408)
++.++.+.+++++..|.-... |.+ +...+.+..+.++. .++++|...+.+.+++..... .++
T Consensus 180 ~~~~~~~~~~~~l~~g~~~~~----------kg~--~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v 247 (360)
T cd04951 180 NALGVKNDTFVILAVGRLVEA----------KDY--PNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRV 247 (360)
T ss_pred HHcCcCCCCEEEEEEeeCchh----------cCc--HHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcE
Confidence 445565556777776643321 223 46666666666542 566777655555555544332 223
Q ss_pred cccCCHHHHHH-hcccCEEEeC
Q 015347 377 VFITTPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 377 ~~i~~~~eLaA-i~~adl~I~n 397 (408)
.+.....++.. ++.||++|..
T Consensus 248 ~~~g~~~~~~~~~~~ad~~v~~ 269 (360)
T cd04951 248 KLLGLRDDIAAYYNAADLFVLS 269 (360)
T ss_pred EEecccccHHHHHHhhceEEec
Confidence 32322367777 9999998875
No 24
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=95.68 E-value=0.89 Score=45.98 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=66.0
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch--HhhhcCCCCcEEEEecCCC--C---CCC-------
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWANVYDLDD--D---WPE------- 187 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~--~lle~~P~Vd~Vi~~d~k~--~---~~~------- 187 (408)
++||++..-+-=|=+.=..-+.++|++ ++.+|.+++..+.. .++... .++ .+.++... + +..
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~--~g~~v~~vg~~~~~e~~l~~~~-g~~-~~~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKE--DNWDISYIGSHQGIEKTIIEKE-NIP-YYSISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHh--CCCEEEEEECCCccccccCccc-CCc-EEEEeccCcCCCchHHHHHHHHHH
Confidence 367777777777777666777778886 68999999966654 233222 233 22332211 1 100
Q ss_pred hHHHHHHHHHhhcCCCcEEEEcCCC-ChHHHHHHHHhCCCeEE
Q 015347 188 PAEYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMTTARDRV 229 (408)
Q Consensus 188 ~~~~~~l~~~LR~~~YDlvIdl~~~-~~~sall~~laga~~RI 229 (408)
+..+++.++.+|+.+.|++|.+.+. +.-..+.+++.|+|..+
T Consensus 77 ~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i 119 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLL 119 (352)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEE
Confidence 2345566677899999999987544 22357788889998654
No 25
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=95.52 E-value=1.3 Score=44.14 Aligned_cols=103 Identities=11% Similarity=-0.057 Sum_probs=64.5
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCc--hHhhhcCCCCcEEEEecCCC--CCC----------C
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG--KQTFELNKNVRWANVYDLDD--DWP----------E 187 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~--~~lle~~P~Vd~Vi~~d~k~--~~~----------~ 187 (408)
+|||+|+-.+.=|+.-...-+.++|++. +.++++++.+.. ...++. ..++ ++.++... +.. -
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~l~~~~~~ 76 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR--GWEVLYLGTARGMEARLVPK-AGIE-FHFIPSGGLRRKGSLANLKAPFKL 76 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEEECCCchhhhcccc-CCCc-EEEEeccCcCCCChHHHHHHHHHH
Confidence 4899998764448888788999999987 679999987663 223332 2343 33333211 101 1
Q ss_pred hHHHHHHHHHhhcCCCcEEEEcCCC-ChHHHHHHHHhCCCeE
Q 015347 188 PAEYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMTTARDR 228 (408)
Q Consensus 188 ~~~~~~l~~~LR~~~YDlvIdl~~~-~~~sall~~laga~~R 228 (408)
+..+.++.+.+|++++|+++..... .....+..++.+.|.-
T Consensus 77 ~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v 118 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLV 118 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEE
Confidence 2334455666788899999987532 2445556777777753
No 26
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=95.49 E-value=0.3 Score=47.84 Aligned_cols=59 Identities=8% Similarity=-0.048 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhC-C-CEEEeCC--cchHHHHHHHHhcCCCc-c--ccCCHHHHHH-hcccCEEEeC
Q 015347 339 QVWAEIANGLREF-R-PLFVIPH--EKEREGVEDVVGDDASI-V--FITTPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 339 e~waeLa~~L~~~-~-~vvligg--p~E~e~~~~I~~~~~~~-~--~i~~~~eLaA-i~~adl~I~n 397 (408)
+.+++.++.+.++ + +|++++. ++|.+..+++...+... . ...++.|+.. +++|+++||+
T Consensus 191 ~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~ 257 (298)
T TIGR03609 191 LRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGM 257 (298)
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEe
Confidence 3455556666555 4 6766654 56777777776654321 1 1235589999 9999999985
No 27
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=95.49 E-value=0.36 Score=49.29 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=49.2
Q ss_pred CccEEEEEcCC-ChhHHHHHHHHHHHHHHHCCC-cEEE---EEE--CCCchH--------hhhcCCCCcEEEEecCCCCC
Q 015347 121 DVRRCCCIISG-GVYENLLFFPAIQLLKDRYPG-VLID---VIA--SARGKQ--------TFELNKNVRWANVYDLDDDW 185 (408)
Q Consensus 121 ~~~rILIIr~~-~IGDvILttPvI~aLK~~yP~-A~Id---vLv--~~~~~~--------lle~~P~Vd~Vi~~d~k~~~ 185 (408)
..|||||+-.+ |-|=.--+--+-++|.+..++ +++. ++. .+.... .++..|.+=..+.+. ...+
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~-~~~~ 82 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYS-RPDK 82 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHc-Cchh
Confidence 46899998865 666666666778888877664 5544 332 221111 112223222111111 1111
Q ss_pred CC-----hHHHHHHHHHhhcCCCcEEEEcCCC
Q 015347 186 PE-----PAEYTDILGVMKNRYYDMVLSTKLA 212 (408)
Q Consensus 186 ~~-----~~~~~~l~~~LR~~~YDlvIdl~~~ 212 (408)
.. ...+.++.+.|+++++|++|.+...
T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~ 114 (391)
T PRK13608 83 LDKCFYKYYGLNKLINLLIKEKPDLILLTFPT 114 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCEEEECCcH
Confidence 11 1122467788899999999997554
No 28
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=95.48 E-value=0.83 Score=45.80 Aligned_cols=101 Identities=18% Similarity=0.087 Sum_probs=61.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch----HhhhcCCCCcEE-EEecCCCCCCC-----hHHHH
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK----QTFELNKNVRWA-NVYDLDDDWPE-----PAEYT 192 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~----~lle~~P~Vd~V-i~~d~k~~~~~-----~~~~~ 192 (408)
|||||+ .+.--|.++..|++++|++. |+.+..+++..... ++++...-..++ +.+.. .. .. ...+.
T Consensus 1 ~~i~~~-~gtr~~~~~~~p~~~~l~~~-~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~ 76 (365)
T TIGR00236 1 LKVSIV-LGTRPEAIKMAPLIRALKKY-PEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMS-PG-QTLGEITSNMLE 76 (365)
T ss_pred CeEEEE-EecCHHHHHHHHHHHHHhhC-CCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCC-CC-CCHHHHHHHHHH
Confidence 467754 46667999999999999964 67777777754433 334332211111 22222 11 12 12346
Q ss_pred HHHHHhhcCCCcEEEEcCCC--ChHHHHHHHHhCCCe
Q 015347 193 DILGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARD 227 (408)
Q Consensus 193 ~l~~~LR~~~YDlvIdl~~~--~~~sall~~laga~~ 227 (408)
++.+.+++.++|+++..... +.-.++.++..|+|.
T Consensus 77 ~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv 113 (365)
T TIGR00236 77 GLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPV 113 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCE
Confidence 67778899999999987432 133466678888885
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.32 E-value=0.95 Score=44.20 Aligned_cols=103 Identities=11% Similarity=0.004 Sum_probs=65.0
Q ss_pred cEEEEEcC-CChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe---cCCCCCC-------C----
Q 015347 123 RRCCCIIS-GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY---DLDDDWP-------E---- 187 (408)
Q Consensus 123 ~rILIIr~-~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~---d~k~~~~-------~---- 187 (408)
||||+... .|+|=+.-+.+++++|| +.+|++++.......++..=.+.++..+ ..+.... .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~Lr----g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARALR----GHEVTFITSGPAPEFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHc----cCceEEEEcCCcHHHhccccCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 78999666 49999999999999993 4699999988777777443111111111 1111110 0
Q ss_pred ---hHHHHHHHHHhhcCCCcEEEEcCCCChHHHHHHHHhCCCeEEEec
Q 015347 188 ---PAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYI 232 (408)
Q Consensus 188 ---~~~~~~l~~~LR~~~YDlvIdl~~~~~~sall~~laga~~RIG~~ 232 (408)
.....++++.+++.++|++|+=... .....+...|+|. |+..
T Consensus 77 ~~~~~~~~~~~~~l~~~~pDlVIsD~~~--~~~~aa~~~giP~-i~i~ 121 (318)
T PF13528_consen 77 ARLARRIRREIRWLREFRPDLVISDFYP--LAALAARRAGIPV-IVIS 121 (318)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcChH--HHHHHHHhcCCCE-EEEE
Confidence 0122335556788899999975333 3567778888883 5544
No 30
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.29 E-value=0.77 Score=45.77 Aligned_cols=103 Identities=14% Similarity=0.032 Sum_probs=58.4
Q ss_pred cEEEEEcCC-ChhHH-HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcC--CCCcEEEEecCCCCCCChHHHHHHHHHh
Q 015347 123 RRCCCIISG-GVYEN-LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN--KNVRWANVYDLDDDWPEPAEYTDILGVM 198 (408)
Q Consensus 123 ~rILIIr~~-~IGDv-ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~--P~Vd~Vi~~d~k~~~~~~~~~~~l~~~L 198 (408)
.+||.|..+ ..|-+ -....+++.|++. +.++++++......+.+.. -+| +++.+..... ..+..+..+.+.+
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~--~~~~~v~~~~~~~~~~~~~~~~~i-~~~~~~~~~~-~~~~~~~~l~~~l 77 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPAD--RYRHAVVALTEVSAFRKRIQRPDV-AFYALHKQPG-KDVAVYPQLYRLL 77 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhcccc--ccceEEEEcCCCChhHHHHHhcCc-eEEEeCCCCC-CChHHHHHHHHHH
Confidence 466665554 45655 4555677777654 3356666633222333222 244 3666654332 3445567788889
Q ss_pred hcCCCcEEEEcCCCChHHHHHHHHhCCCeEE
Q 015347 199 KNRYYDMVLSTKLAGLGHAAFLFMTTARDRV 229 (408)
Q Consensus 199 R~~~YDlvIdl~~~~~~sall~~laga~~RI 229 (408)
+++++|++..-...+....+++++.+.+.++
T Consensus 78 ~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 78 RQLRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred HHhCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 9999999865433223334556667777655
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.27 E-value=2.3 Score=43.39 Aligned_cols=106 Identities=9% Similarity=-0.086 Sum_probs=67.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCC-----CC-------ChHH
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD-----WP-------EPAE 190 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~-----~~-------~~~~ 190 (408)
|+|++.--+.=|=+--..-+.+.|+++-.+ ++.|+.......-...-..-.++..++...- +. -+..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKG 79 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHHHHHHH
Confidence 466777777778888888899999999888 8999954444333322222334555554321 11 1223
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCC-hHHHHHHHHhCCCeEE
Q 015347 191 YTDILGVMKNRYYDMVLSTKLAG-LGHAAFLFMTTARDRV 229 (408)
Q Consensus 191 ~~~l~~~LR~~~YDlvIdl~~~~-~~sall~~laga~~RI 229 (408)
.+...+.||+.+.|++|.+.+.. .-..+.+++.|+|.-+
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i 119 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVII 119 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEE
Confidence 44556678999999999986552 3445557777777543
No 32
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=94.85 E-value=0.61 Score=47.81 Aligned_cols=241 Identities=17% Similarity=0.126 Sum_probs=122.2
Q ss_pred EEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCC--CC----CChHHH----HHH
Q 015347 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--DW----PEPAEY----TDI 194 (408)
Q Consensus 125 ILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~--~~----~~~~~~----~~l 194 (408)
|+|+---.=||.. ..-++++||+++|++++.-+..++.+. -+++-++.++.-. ++ +++..+ ..+
T Consensus 1 I~i~AGE~SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~~M~~-----~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~ 74 (373)
T PF02684_consen 1 IFISAGEASGDLH-GARLIRALKARDPDIEFYGVGGPRMQA-----AGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKL 74 (373)
T ss_pred CEEEeeCccHHHH-HHHHHHHHHhhCCCcEEEEEechHHHh-----CCCceecchHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 4555555668865 456799999999999999999776654 2333333222111 01 111222 234
Q ss_pred HHHhhcCCCcEEEEcCCCC--hHHHHHHHHhCCCeE-EEecCCCcccccccc------cceeeeccCcCCcchhHHHHHH
Q 015347 195 LGVMKNRYYDMVLSTKLAG--LGHAAFLFMTTARDR-VSYIYPNVNAAGAGL------LLSETFTAESMNLSERGYNMYE 265 (408)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~~--~~sall~~laga~~R-IG~~~~~~~~~~~~~------~lt~~v~~~~~~~~~h~~~~y~ 265 (408)
.+.+++++.|++|-...-+ .+.+-.+.-.|.+.+ |=|..|.+..|+.+. ..++.+..=+ ...
T Consensus 75 ~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~ifP-----FE~---- 145 (373)
T PF02684_consen 75 VERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKYVDHLLVIFP-----FEP---- 145 (373)
T ss_pred HHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceeeeCccHHHHHHHHHhheeECCc-----ccH----
Confidence 4445678999999654333 455555666676643 446666655544321 1111111000 001
Q ss_pred HHHHHcCCCCCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCC-CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHH
Q 015347 266 QMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEI 344 (408)
Q Consensus 266 ~lL~~LGi~~~~~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~-~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeL 344 (408)
.+.+..|++...+.. |-+........+...++. . +. ++++|++-|||.... ..+.+| -|.+.
T Consensus 146 ~~y~~~g~~~~~VGH---Pl~d~~~~~~~~~~~~~~---~-l~~~~~iIaLLPGSR~~E--------I~rllP--~~l~a 208 (373)
T PF02684_consen 146 EFYKKHGVPVTYVGH---PLLDEVKPEPDRAEAREK---L-LDPDKPIIALLPGSRKSE--------IKRLLP--IFLEA 208 (373)
T ss_pred HHHhccCCCeEEECC---cchhhhccCCCHHHHHHh---c-CCCCCcEEEEeCCCCHHH--------HHHHHH--HHHHH
Confidence 122334543333321 111111111112222222 2 33 567999999988765 234566 78899
Q ss_pred HHHHhhCC---CEEEeCCcchH-HHHHHHHhcC-CCccccCCHHHHHH-hcccCEEEeC
Q 015347 345 ANGLREFR---PLFVIPHEKER-EGVEDVVGDD-ASIVFITTPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 345 a~~L~~~~---~vvliggp~E~-e~~~~I~~~~-~~~~~i~~~~eLaA-i~~adl~I~n 397 (408)
++.|.++. ++++-..+... +.++++.... .+...+...++.-. ++.||+.+..
T Consensus 209 a~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~ 267 (373)
T PF02684_consen 209 AKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAA 267 (373)
T ss_pred HHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhc
Confidence 99998775 33343444433 3355554432 22221111234445 7777776543
No 33
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=94.69 E-value=4.6 Score=39.37 Aligned_cols=84 Identities=6% Similarity=0.067 Sum_probs=57.3
Q ss_pred ChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHh---hhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCCCcEEEE
Q 015347 132 GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQT---FELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLS 208 (408)
Q Consensus 132 ~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~l---le~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~YDlvId 208 (408)
|+|=+.=..-+.++|+++ +.++.+++......+ ++...+ .|+.++....|. .....+...|++.+.|++|.
T Consensus 13 G~GHv~Rcl~LA~~l~~~--g~~v~f~~~~~~~~~~~~i~~~g~--~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~vV~ 86 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQ--GAEVAFACKPLPGDLIDLLLSAGF--PVYELPDESSRY--DDALELINLLEEEKFDILIV 86 (279)
T ss_pred cccHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHcCC--eEEEecCCCchh--hhHHHHHHHHHhcCCCEEEE
Confidence 789999999999999775 789999998866644 434444 466665433221 23445777888889999998
Q ss_pred cCCCChHHHHHHHH
Q 015347 209 TKLAGLGHAAFLFM 222 (408)
Q Consensus 209 l~~~~~~sall~~l 222 (408)
-+.. ........+
T Consensus 87 D~y~-~~~~~~~~~ 99 (279)
T TIGR03590 87 DHYG-LDADWEKLI 99 (279)
T ss_pred cCCC-CCHHHHHHH
Confidence 7766 444444433
No 34
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.59 E-value=0.68 Score=50.11 Aligned_cols=242 Identities=9% Similarity=-0.028 Sum_probs=124.1
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCC--C----CCChHH----H
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--D----WPEPAE----Y 191 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~--~----~~~~~~----~ 191 (408)
..||.|+.--.=||+.- .-++++||+++|++++.=+..++.+.. + ++-++..+.-. + .+++.. +
T Consensus 226 ~~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~~M~aa--G---~e~l~d~~eLsVmG~~EVL~~l~~l~~~~ 299 (608)
T PRK01021 226 NTSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGPQMRAE--G---FHPLFNMEEFQVSGFWEVLLALFKLWYRY 299 (608)
T ss_pred CCeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccHHHHhC--c---CcccCChHHhhhhhHHHHHHHHHHHHHHH
Confidence 35899888778899654 456999999999999998887766532 1 11111111000 0 011222 2
Q ss_pred HHHHHHhhcCCCcEEEEcCCCC--hHHHHHHHHhCCC-eEEEecCCCcccccccc------cceeeecc-CcCCcchhHH
Q 015347 192 TDILGVMKNRYYDMVLSTKLAG--LGHAAFLFMTTAR-DRVSYIYPNVNAAGAGL------LLSETFTA-ESMNLSERGY 261 (408)
Q Consensus 192 ~~l~~~LR~~~YDlvIdl~~~~--~~sall~~laga~-~RIG~~~~~~~~~~~~~------~lt~~v~~-~~~~~~~h~~ 261 (408)
.++.+.+++++.|++|-...-+ ++.+-.+.-.|++ .-|=|..|.+..|+.+. ..++.+.. +-+ .
T Consensus 300 ~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAWR~~Rikki~k~vD~ll~IfPFE------~ 373 (608)
T PRK01021 300 RKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAWRPKRKTILEKYLDLLLLILPFE------Q 373 (608)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceeeCcchHHHHHHHhhhheecCccC------H
Confidence 3344556778999999654332 4555555556651 23556666665443321 01111110 000 1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCc-cccCHHHHHHHHHHHHhhCCC-CCCeEEEEcCCCCchhhccCCCCCCCCCCHH
Q 015347 262 NMYEQMVDWLGRPFRSVPRHPVPPLR-VSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQ 339 (408)
Q Consensus 262 ~~y~~lL~~LGi~~~~~p~~~~p~~~-i~is~~~~~~a~~~l~~~g~~-~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e 339 (408)
+ ..+.-|++...+. + |-.+ +... .+.+ +..++.|+. +++.|++-|||.... ..+.+|
T Consensus 374 ~----~y~~~gv~v~yVG-H--PL~d~i~~~-~~~~---~~r~~lgl~~~~~iIaLLPGSR~~E--------I~rllP-- 432 (608)
T PRK01021 374 N----LFKDSPLRTVYLG-H--PLVETISSF-SPNL---SWKEQLHLPSDKPIVAAFPGSRRGD--------ILRNLT-- 432 (608)
T ss_pred H----HHHhcCCCeEEEC-C--cHHhhcccC-CCHH---HHHHHcCCCCCCCEEEEECCCCHHH--------HHHHHH--
Confidence 1 2223455433332 1 1111 1101 1111 224456775 568999999987764 235566
Q ss_pred HHHHHHH--HHhhCCCEEEeCCcc-hHHHHHHHHhcCC--CccccCCHHHHHH-hcccCEEEeC
Q 015347 340 VWAEIAN--GLREFRPLFVIPHEK-EREGVEDVVGDDA--SIVFITTPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 340 ~waeLa~--~L~~~~~vvliggp~-E~e~~~~I~~~~~--~~~~i~~~~eLaA-i~~adl~I~n 397 (408)
-+.+.++ .+.++.++++...+. +++.+++..+... ...++.. ++--. ++.||+.++.
T Consensus 433 v~l~aa~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~-~~~~~~m~aaD~aLaa 495 (608)
T PRK01021 433 IQVQAFLASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPS-QFRYELMRECDCALAK 495 (608)
T ss_pred HHHHHHHHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecC-cchHHHHHhcCeeeec
Confidence 6778887 554433443433333 3566666554221 1122221 11234 8888887765
No 35
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=93.49 E-value=1.5 Score=37.20 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=60.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCC-CCChHHHHHHHHHhhcCC
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD-WPEPAEYTDILGVMKNRY 202 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~-~~~~~~~~~l~~~LR~~~ 202 (408)
|||+|.... + .+....++.|+++ |.+|++++......-.+...+| +++.++...+ ......+.++.+.+++++
T Consensus 1 KIl~i~~~~--~-~~~~~~~~~L~~~--g~~V~ii~~~~~~~~~~~~~~i-~~~~~~~~~k~~~~~~~~~~l~k~ik~~~ 74 (139)
T PF13477_consen 1 KILLIGNTP--S-TFIYNLAKELKKR--GYDVHIITPRNDYEKYEIIEGI-KVIRLPSPRKSPLNYIKYFRLRKIIKKEK 74 (139)
T ss_pred CEEEEecCc--H-HHHHHHHHHHHHC--CCEEEEEEcCCCchhhhHhCCe-EEEEecCCCCccHHHHHHHHHHHHhccCC
Confidence 567766654 2 3466889999997 7799999986665555556666 3666552221 111223557778899999
Q ss_pred CcEEEEcCCC--ChHHHHHHHHhC
Q 015347 203 YDMVLSTKLA--GLGHAAFLFMTT 224 (408)
Q Consensus 203 YDlvIdl~~~--~~~sall~~lag 224 (408)
||++..-... +....+...+.|
T Consensus 75 ~DvIh~h~~~~~~~~~~l~~~~~~ 98 (139)
T PF13477_consen 75 PDVIHCHTPSPYGLFAMLAKKLLK 98 (139)
T ss_pred CCEEEEecCChHHHHHHHHHHHcC
Confidence 9999765433 233445556677
No 36
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=93.48 E-value=11 Score=39.24 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=55.2
Q ss_pred CccEEEEEcC-------CChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec-----CCCCC-CC
Q 015347 121 DVRRCCCIIS-------GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD-----LDDDW-PE 187 (408)
Q Consensus 121 ~~~rILIIr~-------~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d-----~k~~~-~~ 187 (408)
..|||+++.- +|+. ....-+++.|+++ +.++++++.....+ +....+. |+... ..... ..
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~--~~~~~l~~~L~~~--G~eV~vlt~~~~~~--~~~~g~~-v~~~~~~~~~~~~~~~~~ 129 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYK--NRFQNFIRYLREM--GDEVLVVTTDEGVP--QEFHGAK-VIGSWSFPCPFYQKVPLS 129 (465)
T ss_pred CCceEEEEECCcCCcccccHH--HHHHHHHHHHHHC--CCeEEEEecCCCCC--ccccCce-eeccCCcCCccCCCceee
Confidence 3489998732 3333 3446788999886 78999999654321 1111221 22111 00000 01
Q ss_pred hHHHHHHHHHhhcCCCcEEEEcCCC--ChHHHHHHHHhCCCeEEEe
Q 015347 188 PAEYTDILGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARDRVSY 231 (408)
Q Consensus 188 ~~~~~~l~~~LR~~~YDlvIdl~~~--~~~sall~~laga~~RIG~ 231 (408)
+....++.+.+++.+||++...... .+...+++.+.|+|..+.+
T Consensus 130 ~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~ 175 (465)
T PLN02871 130 LALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSY 175 (465)
T ss_pred ccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEE
Confidence 1111356778888999998754322 1122334566788765544
No 37
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=92.87 E-value=1.9 Score=44.02 Aligned_cols=219 Identities=13% Similarity=0.064 Sum_probs=112.1
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhh-hcCCCCcEE--EEecCCCCCCC----hHHHHHH
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTF-ELNKNVRWA--NVYDLDDDWPE----PAEYTDI 194 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~ll-e~~P~Vd~V--i~~d~k~~~~~----~~~~~~l 194 (408)
++||.|+---.=||.+.. =+|++||++||++++.=+..++.+..= +..=+..++ ..+-. -.++ ++.+.++
T Consensus 1 ~~ki~i~AGE~SGDllGa-~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~E--VL~~lp~llk~~~~~ 77 (381)
T COG0763 1 MLKIALSAGEASGDLLGA-GLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVE--VLGRLPRLLKIRREL 77 (381)
T ss_pred CceEEEEecccchhhHHH-HHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHH--HHHHHHHHHHHHHHH
Confidence 368888888888998766 479999999999998888765543221 111011111 00000 0001 1222345
Q ss_pred HHHhhcCCCcEEEEcCCCC--hHHHHHHHHhCCCe-EEEecCCCcccccccc------cceeeecc-CcCCcchhHHHHH
Q 015347 195 LGVMKNRYYDMVLSTKLAG--LGHAAFLFMTTARD-RVSYIYPNVNAAGAGL------LLSETFTA-ESMNLSERGYNMY 264 (408)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~~--~~sall~~laga~~-RIG~~~~~~~~~~~~~------~lt~~v~~-~~~~~~~h~~~~y 264 (408)
++.+.+.+.|++|....-+ .+.+--++-.|-.. .|-|..|.+..|..+. .+++.... +-+
T Consensus 78 ~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE---------- 147 (381)
T COG0763 78 VRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFE---------- 147 (381)
T ss_pred HHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceeeechhhHHHHHHHhhHeeeecCCC----------
Confidence 5555678999999654332 44555566667222 3567777775543321 01111110 000
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCC-CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHH
Q 015347 265 EQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAE 343 (408)
Q Consensus 265 ~~lL~~LGi~~~~~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~-~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~wae 343 (408)
-+..+..|++.+.+..+-.....+. .+++.+ .+++++. +++.+++-|||..+. ..+ =.+-|.+
T Consensus 148 ~~~y~k~g~~~~yVGHpl~d~i~~~---~~r~~a---r~~l~~~~~~~~lalLPGSR~sE--------I~r--l~~~f~~ 211 (381)
T COG0763 148 PAFYDKFGLPCTYVGHPLADEIPLL---PDREAA---REKLGIDADEKTLALLPGSRRSE--------IRR--LLPPFVQ 211 (381)
T ss_pred HHHHHhcCCCeEEeCChhhhhcccc---ccHHHH---HHHhCCCCCCCeEEEecCCcHHH--------HHH--HHHHHHH
Confidence 0122344554332321100111111 122223 3455666 568999999988775 122 3457899
Q ss_pred HHHHHhhCC---CEEEeCCcch-HHHHHHH
Q 015347 344 IANGLREFR---PLFVIPHEKE-REGVEDV 369 (408)
Q Consensus 344 La~~L~~~~---~vvliggp~E-~e~~~~I 369 (408)
.++.|..+. .+++-..+.. +...++.
T Consensus 212 a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~ 241 (381)
T COG0763 212 AAQELKARYPDLKFVLPLVNAKYRRIIEEA 241 (381)
T ss_pred HHHHHHhhCCCceEEEecCcHHHHHHHHHH
Confidence 999998665 4444333333 3433333
No 38
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=92.80 E-value=9.5 Score=36.62 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHhhC-C-CEEEeCCcchHHHHHHHHh--cCCCccccC--CHHHHHH-hcccCEEEeC
Q 015347 336 LPIQVWAEIANGLREF-R-PLFVIPHEKEREGVEDVVG--DDASIVFIT--TPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 336 WP~e~waeLa~~L~~~-~-~vvliggp~E~e~~~~I~~--~~~~~~~i~--~~~eLaA-i~~adl~I~n 397 (408)
-..+.+.+.++.+.+. . .++++|...+.+.+.+.+. ...++.+.. ...++.. ++.||++|..
T Consensus 233 k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~ 301 (394)
T cd03794 233 QGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVP 301 (394)
T ss_pred cCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEe
Confidence 3567888888888765 3 6777776666655555432 223333222 2267888 9999998854
No 39
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=92.63 E-value=2.7 Score=42.99 Aligned_cols=113 Identities=14% Similarity=0.060 Sum_probs=62.1
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCC---CCCCh----HHHHHH
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD---DWPEP----AEYTDI 194 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~---~~~~~----~~~~~l 194 (408)
..||+|+--+-=||+.=. -++++||++.|++++.-+..+..+. ++.+..-....++... ..+.+ ..+...
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~--~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAA--EGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHh--CcCccccChHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 457887777777999988 9999999987765554444332111 1111100011111100 01111 122344
Q ss_pred HHHhhcCCCcEEEEcCCCChH--HHHHHHHhCCCeEEEecCCCccc
Q 015347 195 LGVMKNRYYDMVLSTKLAGLG--HAAFLFMTTARDRVSYIYPNVNA 238 (408)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~~~~--sall~~laga~~RIG~~~~~~~~ 238 (408)
.+.+|+.+.|++|.+.+-+.- .+..+...|+|. +-|..|.++.
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~-v~~i~P~~wa 126 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKI-IYYISPQVWA 126 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCE-EEEeCCcHhh
Confidence 566788999999987654333 333677778884 4454444433
No 40
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=92.23 E-value=9.4 Score=36.00 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=51.3
Q ss_pred EEEEEcCCCh---hHHHHHHHHHHHHHHHCCCcEEEEEECCCch-HhhhcCCCCcEEEEecCCCC---CCChHHHHHHHH
Q 015347 124 RCCCIISGGV---YENLLFFPAIQLLKDRYPGVLIDVIASARGK-QTFELNKNVRWANVYDLDDD---WPEPAEYTDILG 196 (408)
Q Consensus 124 rILIIr~~~I---GDvILttPvI~aLK~~yP~A~IdvLv~~~~~-~lle~~P~Vd~Vi~~d~k~~---~~~~~~~~~l~~ 196 (408)
|||++..+.- |......-++++|++ .+.+|++++..... ..++..+.+..+ .+..... +..+.....+.+
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~--~g~~v~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAE--KGHEVTIISLDKGEPPFYELDPKIKVI-DLGDKRDSKLLARFKKLRRLRK 77 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHh--CCCeEEEEecCCCCCCccccCCcccee-ecccccccchhccccchHHHHH
Confidence 4666665433 444555578888886 36799999876654 344444555422 2222110 112333456677
Q ss_pred HhhcCCCcEEEEcCCC
Q 015347 197 VMKNRYYDMVLSTKLA 212 (408)
Q Consensus 197 ~LR~~~YDlvIdl~~~ 212 (408)
.+++.++|+++.....
T Consensus 78 ~l~~~~~d~i~~~~~~ 93 (348)
T cd03820 78 LLKNNKPDVVISFLTS 93 (348)
T ss_pred hhcccCCCEEEEcCch
Confidence 7888999999988655
No 41
>PRK10307 putative glycosyl transferase; Provisional
Probab=91.53 E-value=9 Score=38.90 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=44.9
Q ss_pred HHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC--CEEEeCCcchHHHHHHHHhc--CCCcc
Q 015347 302 YKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR--PLFVIPHEKEREGVEDVVGD--DASIV 377 (408)
Q Consensus 302 l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~--~vvliggp~E~e~~~~I~~~--~~~~~ 377 (408)
..+.++.+.+++++..|.-... | -.+...+.++.+.+.. .++++|...+++.+++.+.. ..++.
T Consensus 220 ~~~~~~~~~~~~i~~~G~l~~~----------k--g~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~ 287 (412)
T PRK10307 220 RAQLGLPDGKKIVLYSGNIGEK----------Q--GLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVH 287 (412)
T ss_pred HHHcCCCCCCEEEEEcCccccc----------c--CHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceE
Confidence 3445666556666665532221 1 3345555555554332 56677765555666555442 23333
Q ss_pred cc--CCHHHHHH-hcccCEEEeC
Q 015347 378 FI--TTPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 378 ~i--~~~~eLaA-i~~adl~I~n 397 (408)
+. ....++.. ++.||++|.+
T Consensus 288 f~G~~~~~~~~~~~~~aDi~v~p 310 (412)
T PRK10307 288 FLPLQPYDRLPALLKMADCHLLP 310 (412)
T ss_pred EeCCCCHHHHHHHHHhcCEeEEe
Confidence 22 12367778 9999987653
No 42
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=91.21 E-value=15 Score=35.62 Aligned_cols=102 Identities=9% Similarity=0.064 Sum_probs=53.2
Q ss_pred EEEEEcCC-ChhH-HHHHHHHHHHHHHHCCCcEEEEEECCCch----HhhhcCCCCcEEEEecCCCCCCChHHHHHHHHH
Q 015347 124 RCCCIISG-GVYE-NLLFFPAIQLLKDRYPGVLIDVIASARGK----QTFELNKNVRWANVYDLDDDWPEPAEYTDILGV 197 (408)
Q Consensus 124 rILIIr~~-~IGD-vILttPvI~aLK~~yP~A~IdvLv~~~~~----~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~ 197 (408)
|||++... ..|- -....-++++|++. +.++++++..... ..+.. .++. ++.+..... ........+.+.
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~--~~~v~~i~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~ 75 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRS--KIQFDFLVTSKEEGDYDDEIEK-LGGK-IYYIPARKK-NPLKYFKKLYKL 75 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCcc--ceEEEEEEeCCCCcchHHHHHH-cCCe-EEEecCCCc-cHHHHHHHHHHH
Confidence 57777664 3333 33444667777643 6789999865443 12221 1232 333333222 222333455666
Q ss_pred hhcCCCcEEEEcCCC-ChHHHHHHHHhCCCeEEE
Q 015347 198 MKNRYYDMVLSTKLA-GLGHAAFLFMTTARDRVS 230 (408)
Q Consensus 198 LR~~~YDlvIdl~~~-~~~sall~~laga~~RIG 230 (408)
+++.+||+++..... +.-..++....+.+..+-
T Consensus 76 ~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~ 109 (358)
T cd03812 76 IKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIA 109 (358)
T ss_pred HhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEE
Confidence 788999999875443 122233344455665553
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=90.97 E-value=15 Score=35.10 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEeCCcchHHHHHHHHhcCCCccccC--CHHHH
Q 015347 309 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQL 385 (408)
Q Consensus 309 ~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvliggp~E~e~~~~I~~~~~~~~~i~--~~~eL 385 (408)
..+++++..|..... |. .+...+.+..+.+.. .++++|...+............++.+.. ...++
T Consensus 189 ~~~~~i~~~G~~~~~----------k~--~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 256 (359)
T cd03823 189 GGRLRFGFIGQLTPH----------KG--VDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEI 256 (359)
T ss_pred CCceEEEEEecCccc----------cC--HHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHH
Confidence 345666666653332 33 456777777776533 6777776554443332222222222221 23678
Q ss_pred HH-hcccCEEEeCC
Q 015347 386 QI-QQPYNLQTRVK 398 (408)
Q Consensus 386 aA-i~~adl~I~nD 398 (408)
.. ++.||++|.+.
T Consensus 257 ~~~~~~ad~~i~ps 270 (359)
T cd03823 257 DDFYAEIDVLVVPS 270 (359)
T ss_pred HHHHHhCCEEEEcC
Confidence 88 99999999653
No 44
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=90.77 E-value=17 Score=35.57 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=44.7
Q ss_pred cEEEEEcCCChhHH-HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCC--CC----CChHHHHHHH
Q 015347 123 RRCCCIISGGVYEN-LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--DW----PEPAEYTDIL 195 (408)
Q Consensus 123 ~rILIIr~~~IGDv-ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~--~~----~~~~~~~~l~ 195 (408)
|||+++.....|.+ ...+-+.+.|.++ |.+|++++...........+.+. +..++... .+ ........+.
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~--G~~v~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARR--GHEVHFITSSRPFRLDEYSPNIF-FHEVEVPQYPLFQYPPYDLALASKIA 77 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhc--CCceEEEecCCCcchhhhccCeE-EEEecccccchhhcchhHHHHHHHHH
Confidence 57777766333322 3455677788777 67889988653322222233322 22222111 00 1122335566
Q ss_pred HHhhcCCCcEEEEc
Q 015347 196 GVMKNRYYDMVLST 209 (408)
Q Consensus 196 ~~LR~~~YDlvIdl 209 (408)
+.+++.++|++...
T Consensus 78 ~~i~~~~~divh~~ 91 (371)
T cd04962 78 EVAKRYKLDLLHVH 91 (371)
T ss_pred HHHhcCCccEEeec
Confidence 77888999988753
No 45
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=90.45 E-value=4.7 Score=40.89 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=15.0
Q ss_pred HHHHHhhcCCCcEEEEcCC
Q 015347 193 DILGVMKNRYYDMVLSTKL 211 (408)
Q Consensus 193 ~l~~~LR~~~YDlvIdl~~ 211 (408)
++.+.|+++++|++++.+.
T Consensus 91 ~l~~~i~~~~pDvIi~thp 109 (382)
T PLN02605 91 EVAKGLMKYKPDIIVSVHP 109 (382)
T ss_pred HHHHHHHhcCcCEEEEeCc
Confidence 4556788899999999653
No 46
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=90.13 E-value=17 Score=34.26 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=47.9
Q ss_pred EEEEEcCCC-hhH-HHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCc---EEEEecCCCCCCChHHHHHHHHHh
Q 015347 124 RCCCIISGG-VYE-NLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVR---WANVYDLDDDWPEPAEYTDILGVM 198 (408)
Q Consensus 124 rILIIr~~~-IGD-vILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd---~Vi~~d~k~~~~~~~~~~~l~~~L 198 (408)
|||++..+. .|. .....-++++|++. +.+|++++............... ....... ..+........+.+.+
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~--g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKR--GYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKL-KSLRDLLAILRLRRLL 77 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhc--CceEEEEEcCCCCccccccccchhhhceeeeec-ccccchhHHHHHHHHH
Confidence 567766653 333 34455788888554 67888888665544332222110 1111111 1112334456677778
Q ss_pred hcCCCcEEEEcCC
Q 015347 199 KNRYYDMVLSTKL 211 (408)
Q Consensus 199 R~~~YDlvIdl~~ 211 (408)
++.++|+++....
T Consensus 78 ~~~~~dii~~~~~ 90 (353)
T cd03811 78 RKEKPDVVISHLT 90 (353)
T ss_pred HhcCCCEEEEcCc
Confidence 8899999998765
No 47
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=89.93 E-value=15 Score=35.19 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=47.7
Q ss_pred hCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC---CEEEeCCcchHHHHHHHHhcC---CCccc
Q 015347 305 AGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVF 378 (408)
Q Consensus 305 ~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~---~vvliggp~E~e~~~~I~~~~---~~~~~ 378 (408)
.+..+.+.+++..|.-.. ..-.+...+++..+.++. .++++|+..+.+..++..... .++.+
T Consensus 196 ~~~~~~~~~i~~~G~~~~------------~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~ 263 (374)
T cd03817 196 LGIPEDEPVLLYVGRLAK------------EKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIF 263 (374)
T ss_pred cCCCCCCeEEEEEeeeec------------ccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEE
Confidence 344445566666664222 134567777777777542 577777766666565554322 22322
Q ss_pred cC--CHHHHHH-hcccCEEEeCC
Q 015347 379 IT--TPGQLQI-QQPYNLQTRVK 398 (408)
Q Consensus 379 i~--~~~eLaA-i~~adl~I~nD 398 (408)
.. ...++.. ++.||++|...
T Consensus 264 ~g~~~~~~~~~~~~~ad~~l~~s 286 (374)
T cd03817 264 TGFVPREELPDYYKAADLFVFAS 286 (374)
T ss_pred eccCChHHHHHHHHHcCEEEecc
Confidence 21 2267888 99999999653
No 48
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=89.90 E-value=1.1 Score=38.98 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=47.3
Q ss_pred CccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcC-----CCCcEEEEecCC
Q 015347 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN-----KNVRWANVYDLD 182 (408)
Q Consensus 121 ~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~-----P~Vd~Vi~~d~k 182 (408)
...+|||+--.|=||.....|++..+.+..|+.++.++.+.....+++.. ..|=.+|.+|..
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 45699999999999999999999999999999999999999888887654 456788888765
No 49
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=89.79 E-value=18 Score=34.12 Aligned_cols=102 Identities=11% Similarity=-0.074 Sum_probs=55.1
Q ss_pred EEEEEcCCC----hhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec-CCC---CCCChHHHHHHH
Q 015347 124 RCCCIISGG----VYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD-LDD---DWPEPAEYTDIL 195 (408)
Q Consensus 124 rILIIr~~~----IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d-~k~---~~~~~~~~~~l~ 195 (408)
|||++.... =|-.....-+++.|++. +.+|++++................+.... ... .+........+.
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~--g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAAR--GHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLR 78 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhc--CceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHH
Confidence 567766643 35677777889999873 77999998665543332222221111100 000 011222334566
Q ss_pred HHhhcCCCcEEEEcCCCChHHH-HHHHHhCCCe
Q 015347 196 GVMKNRYYDMVLSTKLAGLGHA-AFLFMTTARD 227 (408)
Q Consensus 196 ~~LR~~~YDlvIdl~~~~~~sa-ll~~laga~~ 227 (408)
+.+++.++|+++.......... .+....+.+.
T Consensus 79 ~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T cd03801 79 RLLRRERFDVVHAHDWLALLAAALAARLLGIPL 111 (374)
T ss_pred HHhhhcCCcEEEEechhHHHHHHHHHHhcCCcE
Confidence 6678889999998765522222 2344445553
No 50
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=89.74 E-value=20 Score=34.68 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHHHHHHHHCCCcEEEEEECCCc-hHhhhcCCCCcEEEEecCCC--CCCChHHHHHHHHHhhcCCCcEEE
Q 015347 131 GGVYENLLFFPAIQLLKDRYPGVLIDVIASARG-KQTFELNKNVRWANVYDLDD--DWPEPAEYTDILGVMKNRYYDMVL 207 (408)
Q Consensus 131 ~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~-~~lle~~P~Vd~Vi~~d~k~--~~~~~~~~~~l~~~LR~~~YDlvI 207 (408)
+|++-+++. +.++|+++ +.++++++.... ...++. ..++ ++.+.... .+..+.....+.+.+++.++|+++
T Consensus 10 gG~e~~~~~--l~~~L~~~--g~~v~v~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii~ 83 (355)
T cd03819 10 GGVERGTLE--LARALVER--GHRSLVASAGGRLVAELEA-EGSR-HIKLPFISKNPLRILLNVARLRRLIREEKVDIVH 83 (355)
T ss_pred CcHHHHHHH--HHHHHHHc--CCEEEEEcCCCchHHHHHh-cCCe-EEEccccccchhhhHHHHHHHHHHHHHcCCCEEE
Confidence 566655554 47788776 778888875432 222332 2443 33333222 222334456677788899999998
Q ss_pred EcC
Q 015347 208 STK 210 (408)
Q Consensus 208 dl~ 210 (408)
...
T Consensus 84 ~~~ 86 (355)
T cd03819 84 ARS 86 (355)
T ss_pred ECC
Confidence 754
No 51
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=89.32 E-value=2.3 Score=42.02 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=66.6
Q ss_pred EEEE-EcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcC--CCCcE-----EEEecCC-CCCCC-------
Q 015347 124 RCCC-IISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN--KNVRW-----ANVYDLD-DDWPE------- 187 (408)
Q Consensus 124 rILI-Ir~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~--P~Vd~-----Vi~~d~k-~~~~~------- 187 (408)
|||+ +.-.|+|=+.=..+++++|++ +.+|.+++......+++.. +.+.. +...+.+ +.+..
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~---g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN---DYEVSYIASGRSKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC---CCeEEEEEcCCHHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhccc
Confidence 5777 666799999999999999996 7889999988877765443 11111 1111111 00011
Q ss_pred -hHHHHHHHHHhhcCCCcEEEEcCCCChHHHHHHHHhCCCeE
Q 015347 188 -PAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDR 228 (408)
Q Consensus 188 -~~~~~~l~~~LR~~~YDlvIdl~~~~~~sall~~laga~~R 228 (408)
.....+.++.+++.++|+||.. .. ..+.+.++..|+|.-
T Consensus 78 ~~~~~~~~~~~l~~~~pDlVi~d-~~-~~~~~aA~~~~iP~i 117 (321)
T TIGR00661 78 PKKAIRREINIIREYNPDLIISD-FE-YSTVVAAKLLKIPVI 117 (321)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEC-Cc-hHHHHHHHhcCCCEE
Confidence 1133345677888999999987 44 566888999999954
No 52
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=88.97 E-value=11 Score=36.45 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHhhCC---CEEEeCCcchHHHHHHHHhcC---CCcccc--CCHHHHHH-hcccCEEEeC
Q 015347 337 PIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVFI--TTPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 337 P~e~waeLa~~L~~~~---~vvliggp~E~e~~~~I~~~~---~~~~~i--~~~~eLaA-i~~adl~I~n 397 (408)
-.+...+.++.+.+.+ .++++|...+.+.+.+..... .++.+. ....++.. ++.||++|..
T Consensus 193 ~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~ 262 (355)
T cd03799 193 GLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLP 262 (355)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEec
Confidence 3567777777776653 566777766666665554432 222222 22368888 9999999986
No 53
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=88.48 E-value=3.8 Score=41.56 Aligned_cols=227 Identities=15% Similarity=0.086 Sum_probs=107.7
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhc-
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN- 200 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~- 200 (408)
+|||+|+---.=||..- .-++++||+ ++++.=+..++....+-....+. |+-+- .-.+++..++++++++++
T Consensus 1 ~~~i~i~aGE~SGD~~g-a~l~~~l~~---~~~~~G~GG~~m~~~~~~~~~ls-v~G~~--evl~~~~~~~~~~~~~~~~ 73 (347)
T PRK14089 1 MMKILVSALEPSANLHL-KELLKNLPK---DYELIGIFDKSLGNPLYDSREFS-IMGFV--DVLPKLFFAKKAIKEMVEL 73 (347)
T ss_pred CcEEEEEeccccHHHHH-HHHHHHHhc---CCEEEEEechHHHHhcCChHHhh-hhhHH--HHHHHHHHHHHHHHHHHHH
Confidence 46898888777799654 556999998 77877777666511111111110 11000 001122223333333322
Q ss_pred -CCCcEEEEcCCCC--hHHHHHHHHh--CCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHH-HHHH----
Q 015347 201 -RYYDMVLSTKLAG--LGHAAFLFMT--TARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQ-MVDW---- 270 (408)
Q Consensus 201 -~~YDlvIdl~~~~--~~sall~~la--ga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~-lL~~---- 270 (408)
++.|++|-...-+ ++.+-.+.-. |++ -+-|..|.+..|+.+ ++. ...+|.+ ++.-
T Consensus 74 ~~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~-viyyi~PqvWAWr~~-----R~~---------~i~k~~d~vl~ifPFE 138 (347)
T PRK14089 74 AKQADKVLLMDSSSFNIPLAKKIKKAYPKKE-IIYYILPQVWAWKKG-----RAK---------ILEKYCDFLASILPFE 138 (347)
T ss_pred hcCCCEEEEeCCCCCCHHHHHHHHhcCCCCC-EEEEECccceeeCcc-----hHH---------HHHHHHhhhhccCCCC
Confidence 6999999654332 4444445445 455 356776665444332 111 1111221 1111
Q ss_pred ---cCCCCCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHH
Q 015347 271 ---LGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANG 347 (408)
Q Consensus 271 ---LGi~~~~~p~~~~p~~~i~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~ 347 (408)
+|++...+. .| ..+........ ..+++.|++-|||.... ..+..| -+.+.++.
T Consensus 139 ~~~yg~~~~~VG---hP---------l~d~~~~~~~~--~~~~~~I~llPGSR~~E--------i~~llP--~~~~aa~~ 194 (347)
T PRK14089 139 VQFYQSKATYVG---HP---------LLDEIKEFKKD--LDKEGTIAFMPGSRKSE--------IKRLMP--IFKELAKK 194 (347)
T ss_pred HHHhCCCCEEEC---Cc---------HHHhhhhhhhh--cCCCCEEEEECCCCHHH--------HHHHHH--HHHHHHHH
Confidence 133211111 01 00011000011 23347899999987754 112344 56677888
Q ss_pred HhhCCCEEEeCCcchHHHHHHHHhcCCCccccCCHHHHHH-hcccCEEEeC
Q 015347 348 LREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 348 L~~~~~vvliggp~E~e~~~~I~~~~~~~~~i~~~~eLaA-i~~adl~I~n 397 (408)
|.++..++++.++.+.+.+++.........++ ++... ++.||++|+.
T Consensus 195 L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~---~~~~~~m~~aDlal~~ 242 (347)
T PRK14089 195 LEGKEKILVVPSFFKGKDLKEIYGDISEFEIS---YDTHKALLEAEFAFIC 242 (347)
T ss_pred HhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEe---ccHHHHHHhhhHHHhc
Confidence 87654344555544445555544332222222 23345 7888877764
No 54
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=87.65 E-value=23 Score=32.67 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch
Q 015347 132 GVYENLLFFPAIQLLKDRYPGVLIDVIASARGK 164 (408)
Q Consensus 132 ~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~ 164 (408)
.+||.++...+++.|++++|+++|.++......
T Consensus 1 N~GD~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 33 (286)
T PF04230_consen 1 NIGDDLILEALLKLLKKHGPDAEIIIFSPDPDE 33 (286)
T ss_pred CchHHHHHHHHHHHHHhcCCceEEEEeCCChHH
Confidence 479999999999999999999999999854433
No 55
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.14 E-value=11 Score=40.90 Aligned_cols=41 Identities=10% Similarity=-0.041 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCCC-hHHHHHHHHhCCCeEEE
Q 015347 190 EYTDILGVMKNRYYDMVLSTKLAG-LGHAAFLFMTTARDRVS 230 (408)
Q Consensus 190 ~~~~l~~~LR~~~YDlvIdl~~~~-~~sall~~laga~~RIG 230 (408)
.+.++...+|++++|+|-.-...+ ...++.++++|.+..+.
T Consensus 268 ~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~ 309 (578)
T PRK15490 268 GIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQL 309 (578)
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEE
Confidence 567888899999999997765553 45677788999998775
No 56
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=85.72 E-value=36 Score=33.22 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhCC---CEEEeCCcchHHHHHHHHhcC---CCccccC--CHHHHHH-hcccCEEEeC
Q 015347 339 QVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVFIT--TPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 339 e~waeLa~~L~~~~---~vvliggp~E~e~~~~I~~~~---~~~~~i~--~~~eLaA-i~~adl~I~n 397 (408)
+...+.+..|.++. .++++|...+.+.+++..... .++.+.. ...++.. ++.||++|..
T Consensus 204 ~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~p 271 (367)
T cd05844 204 LLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQP 271 (367)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEEC
Confidence 45555555665443 566777655555555555442 2233222 2267888 9999999864
No 57
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=84.69 E-value=2.7 Score=38.76 Aligned_cols=91 Identities=16% Similarity=0.110 Sum_probs=50.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEEC-CCchHhhhcC--CCCcEEEEecCCCCCCChHHHHHHHHHhhc
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIAS-ARGKQTFELN--KNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~-~~~~~lle~~--P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~ 200 (408)
+.+-+.-..+|++....|+++.|++++|+.+|-+-+. +.+....+.. +.|. +..++.+. +.... +-|+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~-~~~~P~D~----~~~~~---rfl~~ 93 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVD-VQYLPLDF----PWAVR---RFLDH 93 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-S-EEE---SS----HHHHH---HHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeE-EEEeCccC----HHHHH---HHHHH
Confidence 5666778889999999999999999999999988875 4444444433 3455 44455432 22223 33455
Q ss_pred CCCcEEEEcCCCChHHHHHHHHh
Q 015347 201 RYYDMVLSTKLAGLGHAAFLFMT 223 (408)
Q Consensus 201 ~~YDlvIdl~~~~~~sall~~la 223 (408)
-+.|++|-+... .-..++..+.
T Consensus 94 ~~P~~~i~~EtE-lWPnll~~a~ 115 (186)
T PF04413_consen 94 WRPDLLIWVETE-LWPNLLREAK 115 (186)
T ss_dssp H--SEEEEES-----HHHHHH--
T ss_pred hCCCEEEEEccc-cCHHHHHHHh
Confidence 568999999888 6666665543
No 58
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=81.10 E-value=4.5 Score=40.86 Aligned_cols=100 Identities=15% Similarity=0.023 Sum_probs=68.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCC------C----------C
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD------W----------P 186 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~------~----------~ 186 (408)
||||++..++.|++-=..++.++|+++ |.+|++++.+..+..++... ++ ++.++.... . .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r--Gh~V~~~t~~~~~~~v~~~G-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA--GHEVRVATPPEFADLVEAAG-LE-FVPVGGDPDELLASPERNAGLLLLGPG 76 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC--CCeEEEeeCHhHHHHHHHcC-Cc-eeeCCCCHHHHHhhhhhcccccccchH
Confidence 799999999999999999999999987 57999999999888887643 32 333332100 0 0
Q ss_pred Ch------------HHHHHHHHHhhcCCCcEEEEcCCCChHHHHHHHHhCCCe
Q 015347 187 EP------------AEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARD 227 (408)
Q Consensus 187 ~~------------~~~~~l~~~LR~~~YDlvIdl~~~~~~sall~~laga~~ 227 (408)
.. ..+..++..++..++|++|.-... .....++...|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~-~~~~~~A~~~giP~ 128 (401)
T cd03784 77 LLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLA-FAGAVAAEALGIPA 128 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHH-HHHHHHHHHhCCCe
Confidence 00 011123444566899999865444 55667777788884
No 59
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=73.46 E-value=6.4 Score=39.79 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHhhC-C-CEEEeCC--cchHHHHHHHHhcCCCccccCCH--HHHHH-hcccCEEEeCCChHH
Q 015347 337 PIQVWAEIANGLREF-R-PLFVIPH--EKEREGVEDVVGDDASIVFITTP--GQLQI-QQPYNLQTRVKSPAL 402 (408)
Q Consensus 337 P~e~waeLa~~L~~~-~-~vvligg--p~E~e~~~~I~~~~~~~~~i~~~--~eLaA-i~~adl~I~nDSGpm 402 (408)
..+.+.++++.|.+. . ++|+..+ |.-...+.+......++.++..+ .++.. +++|+++||+-||..
T Consensus 198 ~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdSsGI~ 270 (346)
T PF02350_consen 198 RLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDSSGIQ 270 (346)
T ss_dssp -HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcCccHH
Confidence 356777788888776 3 7888777 44445555544444455444444 57788 999999999988654
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.05 E-value=90 Score=34.83 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCC-ChHHHHHHHHhCCCeEE
Q 015347 190 EYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMTTARDRV 229 (408)
Q Consensus 190 ~~~~l~~~LR~~~YDlvIdl~~~-~~~sall~~laga~~RI 229 (408)
.+.++.+.+|+.+||+|...... ..-..+.+++.|++..+
T Consensus 388 ~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv 428 (694)
T PRK15179 388 GTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRIV 428 (694)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEEE
Confidence 34678888999999999865433 13345556677887644
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=71.02 E-value=97 Score=30.27 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhhCC-CEEEeCCcchHHHHHHHHhcCCCccccC--CHHHHHH-hcccCEEEeC
Q 015347 336 LPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 336 WP~e~waeLa~~L~~~~-~vvliggp~E~e~~~~I~~~~~~~~~i~--~~~eLaA-i~~adl~I~n 397 (408)
++......+++.+.... +++++|+..+.+.+++ ....++.+.- ...|+.. ++.||++|..
T Consensus 205 ~~~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~--~~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 268 (351)
T cd03804 205 VPYKRIDLAIEAFNKLGKRLVVIGDGPELDRLRA--KAGPNVTFLGRVSDEELRDLYARARAFLFP 268 (351)
T ss_pred ccccChHHHHHHHHHCCCcEEEEECChhHHHHHh--hcCCCEEEecCCCHHHHHHHHHhCCEEEEC
Confidence 33334444555554333 6788887666555554 2223333222 2256888 9999999854
No 62
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=70.78 E-value=1.2e+02 Score=30.44 Aligned_cols=36 Identities=8% Similarity=-0.054 Sum_probs=27.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK 164 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~ 164 (408)
|||+|..+.=|.. --+.++|.++ |.+|++++.....
T Consensus 1 ~il~~~~~~p~~~---~~la~~L~~~--G~~v~~~~~~~~~ 36 (396)
T cd03818 1 RILFVHQNFPGQF---RHLAPALAAQ--GHEVVFLTEPNAA 36 (396)
T ss_pred CEEEECCCCchhH---HHHHHHHHHC--CCEEEEEecCCCC
Confidence 6888888766663 2378888887 9999999977654
No 63
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=70.14 E-value=1.2e+02 Score=30.19 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=50.2
Q ss_pred cEEEEEcCC----ChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHh
Q 015347 123 RRCCCIISG----GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVM 198 (408)
Q Consensus 123 ~rILIIr~~----~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~L 198 (408)
|||+|++-+ |+|-|.-+.-+.+.|+++- ..+.+++.+....++.. |-+++..+.-.. -..+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~--~~~~fl~k~~~e~~~~~---~~~~f~~~~~~~----------~n~i 65 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRG--FACLFLTKQDIEAIIHK---VYEGFKVLEGRG----------NNLI 65 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcC--ceEEEecccchhhhhhh---hhhhccceeeec----------cccc
Confidence 678887754 8999999999999999994 79999998876654332 222322221111 1267
Q ss_pred hcCCCcEEEEcC
Q 015347 199 KNRYYDMVLSTK 210 (408)
Q Consensus 199 R~~~YDlvIdl~ 210 (408)
++++||++|.=+
T Consensus 66 k~~k~d~lI~Ds 77 (318)
T COG3980 66 KEEKFDLLIFDS 77 (318)
T ss_pred ccccCCEEEEec
Confidence 889999998533
No 64
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=68.58 E-value=1.5e+02 Score=30.63 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=59.1
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch---------HhhhcC-CCCcEEEEecCCCCCCChHH-
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK---------QTFELN-KNVRWANVYDLDDDWPEPAE- 190 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~---------~lle~~-P~Vd~Vi~~d~k~~~~~~~~- 190 (408)
.+|||+| ++--=|.+-..|+++++++. |+.+..+++..... .+++-. |..+ ....+.+. .+.+
T Consensus 3 ~~Kv~~I-~GTRPE~iKmapli~~~~~~-~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~-L~i~~~~~---tl~~~ 76 (383)
T COG0381 3 MLKVLTI-FGTRPEAIKMAPLVKALEKD-PDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYD-LNIMKPGQ---TLGEI 76 (383)
T ss_pred ceEEEEE-EecCHHHHHHhHHHHHHHhC-CCCceEEEEecccccHHHHHHHHHHhCCCCCCcc-hhccccCC---CHHHH
Confidence 4566665 45667999999999999876 66666666655444 233333 4443 11111111 2221
Q ss_pred ----HHHHHHHhhcCCCcEEEEcCCC--ChHHHHHHHHhCCCeEEEec
Q 015347 191 ----YTDILGVMKNRYYDMVLSTKLA--GLGHAAFLFMTTARDRVSYI 232 (408)
Q Consensus 191 ----~~~l~~~LR~~~YDlvIdl~~~--~~~sall~~laga~~RIG~~ 232 (408)
+..+-+.|.+++.|+|+..... .+..++.++...++ ||+.
T Consensus 77 t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~Ip--V~Hv 122 (383)
T COG0381 77 TGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIP--VGHV 122 (383)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCc--eEEE
Confidence 2234445678899999864322 13335566666665 6776
No 65
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=67.35 E-value=5.5 Score=34.13 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=43.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCC-CCcEEEE
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNK-NVRWANV 178 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P-~Vd~Vi~ 178 (408)
|||++...++++-.- +..+++.|++. +.+|+++.++.+..++...- ..++|+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~--g~~v~vv~S~~A~~~~~~~~~~~~~v~~ 54 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA--GWEVRVVLSPSAERFVTPEGLTGEPVYT 54 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT--TSEEEEEESHHHHHHSHHHGHCCSCEEC
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC--CCEEEEEECCcHHHHhhhhccccchhhh
Confidence 799999999987766 99999999999 88999999999999887655 5666664
No 66
>PRK06849 hypothetical protein; Provisional
Probab=63.67 E-value=35 Score=34.73 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=56.2
Q ss_pred CCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHH-HHHHHHh
Q 015347 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEY-TDILGVM 198 (408)
Q Consensus 120 ~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~-~~l~~~L 198 (408)
+..|+|||+-.+. -...+++++|+++ |.++.++..... .+-....++++.+.++.... ....+ -.++..+
T Consensus 2 ~~~~~VLI~G~~~----~~~l~iar~l~~~--G~~Vi~~d~~~~-~~~~~s~~~d~~~~~p~p~~--d~~~~~~~L~~i~ 72 (389)
T PRK06849 2 NTKKTVLITGARA----PAALELARLFHNA--GHTVILADSLKY-PLSRFSRAVDGFYTIPSPRW--DPDAYIQALLSIV 72 (389)
T ss_pred CCCCEEEEeCCCc----HHHHHHHHHHHHC--CCEEEEEeCCch-HHHHHHHhhhheEEeCCCCC--CHHHHHHHHHHHH
Confidence 4579999985443 2578999999998 888887765533 33355667888877743221 22233 3455667
Q ss_pred hcCCCcEEEEcCCC
Q 015347 199 KNRYYDMVLSTKLA 212 (408)
Q Consensus 199 R~~~YDlvIdl~~~ 212 (408)
++++.|++|-+...
T Consensus 73 ~~~~id~vIP~~e~ 86 (389)
T PRK06849 73 QRENIDLLIPTCEE 86 (389)
T ss_pred HHcCCCEEEECChH
Confidence 88899999987654
No 67
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=63.29 E-value=1.5e+02 Score=29.51 Aligned_cols=102 Identities=9% Similarity=-0.045 Sum_probs=55.5
Q ss_pred cCHHHHHHH-HHHHHhhCCCCCCeEE-EEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhh---CC--CEEEeCCcch
Q 015347 290 ISRRLKEVV-AEKYKNAGAEQGKYIV-IHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLRE---FR--PLFVIPHEKE 362 (408)
Q Consensus 290 is~~~~~~a-~~~l~~~g~~~~~~Iv-ihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~---~~--~vvliggp~E 362 (408)
++++..+.+ +.+..+++-..++.++ +.+|.+.. -.|..+.+.+|++.|.. .+ .++|+.+.-=
T Consensus 125 i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~-----------~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRT 193 (311)
T PF06258_consen 125 ITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKH-----------YRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRT 193 (311)
T ss_pred CCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCC-----------cccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence 455544443 3333444433455554 45554443 45999988888777753 23 5888877543
Q ss_pred HHHH-HHHHhcC---CCccccCCH--HHHHH-hcccCE-EEeCCChHH
Q 015347 363 REGV-EDVVGDD---ASIVFITTP--GQLQI-QQPYNL-QTRVKSPAL 402 (408)
Q Consensus 363 ~e~~-~~I~~~~---~~~~~i~~~--~eLaA-i~~adl-~I~nDSGpm 402 (408)
.+.+ +.+.... ..+.+.... .=+.+ ++.||. +|+.||-.|
T Consensus 194 p~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSM 241 (311)
T PF06258_consen 194 PPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSM 241 (311)
T ss_pred cHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHH
Confidence 3333 3333322 233222211 33566 888875 678898777
No 68
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=62.16 E-value=35 Score=32.68 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=51.2
Q ss_pred cEEEEEcCC-------ChhHH-HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec-CCCCCCChHHHHH
Q 015347 123 RRCCCIISG-------GVYEN-LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD-LDDDWPEPAEYTD 193 (408)
Q Consensus 123 ~rILIIr~~-------~IGDv-ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d-~k~~~~~~~~~~~ 193 (408)
||||+|... ..|-+ ..+.=++++|++. +.+|++++......-....+........+ ....+........
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~--g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVAR--GHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALAL 78 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhc--CceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHH
Confidence 789998765 34433 4455778888876 77999998655432111111111010000 0000111223344
Q ss_pred HHHHhhcCCCcEEEEcCCCChHHHHHHHHhCCC
Q 015347 194 ILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTAR 226 (408)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~~~~sall~~laga~ 226 (408)
+.+.+++.++|++..-... ...++....+.+
T Consensus 79 ~~~~~~~~~~Divh~~~~~--~~~~~~~~~~~~ 109 (335)
T cd03802 79 AERALAAGDFDIVHNHSLH--LPLPFARPLPVP 109 (335)
T ss_pred HHHHHhcCCCCEEEecCcc--cchhhhcccCCC
Confidence 5566788899998764333 112144445555
No 69
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=61.84 E-value=51 Score=32.72 Aligned_cols=85 Identities=8% Similarity=-0.020 Sum_probs=51.0
Q ss_pred cEEEEEcCC--ChhHH-HHHHHHHHHHHHHCCCcEEEEEECCCch--HhhhcCCCCcEE--EEecCCCCCCChHHHHHHH
Q 015347 123 RRCCCIISG--GVYEN-LLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWA--NVYDLDDDWPEPAEYTDIL 195 (408)
Q Consensus 123 ~rILIIr~~--~IGDv-ILttPvI~aLK~~yP~A~IdvLv~~~~~--~lle~~P~Vd~V--i~~d~k~~~~~~~~~~~l~ 195 (408)
|||+++... ..|-+ -.+.-++++|.++--+.++.+++..... ..++..+.+..+ +.+.. ...+..+..+.
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ 77 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSF---LRRAKHVYNFS 77 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhh---hcccHHHHHHH
Confidence 688888764 34555 4445678888887557899988865532 223333322111 11110 01234456777
Q ss_pred HHhhcCCCcEEEEcC
Q 015347 196 GVMKNRYYDMVLSTK 210 (408)
Q Consensus 196 ~~LR~~~YDlvIdl~ 210 (408)
+.+++.++|+++...
T Consensus 78 ~~l~~~~~Dii~~~~ 92 (359)
T PRK09922 78 KWLKETQPDIVICID 92 (359)
T ss_pred HHHHhcCCCEEEEcC
Confidence 889999999998864
No 70
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=60.36 E-value=1.5e+02 Score=27.85 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHhhCC---CEEEeCCcchHHHHHHHHhcC---CCcccc--CCHHHHHH-hcccCEEEeC
Q 015347 337 PIQVWAEIANGLREFR---PLFVIPHEKEREGVEDVVGDD---ASIVFI--TTPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 337 P~e~waeLa~~L~~~~---~vvliggp~E~e~~~~I~~~~---~~~~~i--~~~~eLaA-i~~adl~I~n 397 (408)
..+.+.+.++.+.+++ .++++|...+.+..++..... .++.+. .+..++.. ++.||++|..
T Consensus 216 ~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~ 285 (377)
T cd03798 216 GIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLP 285 (377)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecc
Confidence 4577778888877653 566667666655555554321 222221 12367778 9999998854
No 71
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=60.01 E-value=60 Score=30.19 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=51.6
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECC-CchHh--hhcCCCCcEEEEecCCCCCCChHHH-HHHHHH
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA-RGKQT--FELNKNVRWANVYDLDDDWPEPAEY-TDILGV 197 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~-~~~~l--le~~P~Vd~Vi~~d~k~~~~~~~~~-~~l~~~ 197 (408)
+|||.|+..+. |.+ +.++++++.+..-.+.|.+++.. ....+ +...-+|. ++.++..+. .....+ -.++..
T Consensus 1 m~ki~vl~sg~-gs~--~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp-~~~~~~~~~-~~~~~~~~~~~~~ 75 (200)
T PRK05647 1 MKRIVVLASGN-GSN--LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIP-TFVLDHKDF-PSREAFDAALVEA 75 (200)
T ss_pred CceEEEEEcCC-Chh--HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCC-EEEECcccc-CchhHhHHHHHHH
Confidence 47888888755 544 34888999888777899987544 33332 33344565 455443321 111111 245677
Q ss_pred hhcCCCcEEEEcC
Q 015347 198 MKNRYYDMVLSTK 210 (408)
Q Consensus 198 LR~~~YDlvIdl~ 210 (408)
|++.+.|++|...
T Consensus 76 l~~~~~D~iv~~~ 88 (200)
T PRK05647 76 LDAYQPDLVVLAG 88 (200)
T ss_pred HHHhCcCEEEhHH
Confidence 8889999999864
No 72
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.73 E-value=1.6e+02 Score=27.96 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhC-C-CEEEeCCcchHHHHHHHHhcCCCccccC--CHHHHHH-hcccCEEEeC
Q 015347 336 LPIQVWAEIANGLREF-R-PLFVIPHEKEREGVEDVVGDDASIVFIT--TPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 336 WP~e~waeLa~~L~~~-~-~vvliggp~E~e~~~~I~~~~~~~~~i~--~~~eLaA-i~~adl~I~n 397 (408)
.-.+.+.++++.+.++ . .++++|...+.+..+ ....++.+.- ...++.. ++.||++|..
T Consensus 210 k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~ 273 (364)
T cd03814 210 KNLEALLDADLPLRRRPPVRLVIVGDGPARARLE---ARYPNVHFLGFLDGEELAAAYASADVFVFP 273 (364)
T ss_pred cCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHh---ccCCcEEEEeccCHHHHHHHHHhCCEEEEC
Confidence 3457888888888764 2 567777654444433 2222333221 2367788 9999998854
No 73
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=59.69 E-value=8.7 Score=38.60 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=33.8
Q ss_pred ccccccCCccEEEEEcC--CChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch
Q 015347 114 LPLKIRGDVRRCCCIIS--GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK 164 (408)
Q Consensus 114 ~~~~~~~~~~rILIIr~--~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~ 164 (408)
+...++.+.++|++... ...+|... -+.+.|++.+|+.++.|++.....
T Consensus 5 ~~~~~p~~~~~Ivf~~~~g~~~~dN~~--~l~~~l~~~~~~~~~~~~~~~~~~ 55 (369)
T PF04464_consen 5 LFKFLPKKKKKIVFESESGNKFSDNPK--ALFEYLIKNYPDYKIYWIINKKSP 55 (369)
T ss_dssp -----G-EEEEEEEEBTTTTBS-HHHH--HHHHHHHHH-TTSEEEEEESSGGG
T ss_pred ccccCcccCCEEEEEECCCCCCCCCHH--HHHHHHHhhCCCcEEEEEEcCchH
Confidence 44455566788888876 57888876 567899999999999999987665
No 74
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=58.82 E-value=12 Score=38.82 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=62.0
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCC--CCcEEEEecCCC--------CCC----C
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNK--NVRWANVYDLDD--------DWP----E 187 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P--~Vd~Vi~~d~k~--------~~~----~ 187 (408)
.||||++-.+..|++.=+..+.++|+++ +.+|++.|.+++++.++... ++..... +... .++ .
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~--gheV~~~~~~~~~~~ve~ag~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR--GHEVVFASTGKFKEFVEAAGLAFVAYPIR-DSELATEDGKFAGVKSFRRL 77 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc--CCeEEEEeCHHHHHHHHHhCcceeecccc-CChhhhhhhhhhccchhHHH
Confidence 4899998888899999999999999988 78999999999999999988 4433332 2110 011 1
Q ss_pred hHHH----HHHHHHhhcCCCcEEEEcCCC
Q 015347 188 PAEY----TDILGVMKNRYYDMVLSTKLA 212 (408)
Q Consensus 188 ~~~~----~~l~~~LR~~~YDlvIdl~~~ 212 (408)
...+ ..++..+++...|+++|....
T Consensus 78 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 106 (406)
T COG1819 78 LQQFKKLIRELLELLRELEPDLVVDDARL 106 (406)
T ss_pred hhhhhhhhHHHHHHHHhcchhhhhcchhh
Confidence 1111 133444777888988885444
No 75
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=58.45 E-value=18 Score=34.51 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=39.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcC
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN 170 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~ 170 (408)
||++-.+++-+=+..+..+++.|+++|++++|+++.++.++.++...
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 46666666666667999999999999999999999999998887654
No 76
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=58.44 E-value=1.7e+02 Score=27.95 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCCCEEEeCCcchHHHHHHHHhcC---CCccccC--CHH
Q 015347 309 QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDD---ASIVFIT--TPG 383 (408)
Q Consensus 309 ~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~~vvliggp~E~e~~~~I~~~~---~~~~~i~--~~~ 383 (408)
..+++++..|.-.. .|. .+...+.++.+. +..++++|...+.+.+++.+... .++.+.. ...
T Consensus 189 ~~~~~i~~~G~~~~----------~K~--~~~li~a~~~l~-~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~ 255 (357)
T cd03795 189 AGRPFFLFVGRLVY----------YKG--LDVLLEAAAALP-DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDE 255 (357)
T ss_pred CCCcEEEEeccccc----------ccC--HHHHHHHHHhcc-CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHH
Confidence 34566666665332 232 446667777666 33677777766666666655321 2333221 125
Q ss_pred HHHH-hcccCEEEeC
Q 015347 384 QLQI-QQPYNLQTRV 397 (408)
Q Consensus 384 eLaA-i~~adl~I~n 397 (408)
++.. ++.||++|..
T Consensus 256 ~~~~~~~~ad~~i~p 270 (357)
T cd03795 256 EKAALLAACDVFVFP 270 (357)
T ss_pred HHHHHHHhCCEEEeC
Confidence 6778 9999999855
No 77
>COG1158 Rho Transcription termination factor [Transcription]
Probab=57.60 E-value=55 Score=33.34 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=69.2
Q ss_pred CCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEE-ECCCchHhhhcCCCCc-EEEEecCCCC---CCChHHH-HH
Q 015347 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVI-ASARGKQTFELNKNVR-WANVYDLDDD---WPEPAEY-TD 193 (408)
Q Consensus 120 ~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvL-v~~~~~~lle~~P~Vd-~Vi~~d~k~~---~~~~~~~-~~ 193 (408)
+...|.|||-+-.-|-++|..-+.++|-..||++++-+| ++++-..+=+....|. +|+.-..+.. ....+++ +.
T Consensus 171 GkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~~HvqVAE~viE 250 (422)
T COG1158 171 GKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPSRHVQVAEMVIE 250 (422)
T ss_pred CCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhhcceEEeecCCCcchhhHHHHHHHHH
Confidence 667899999999999999999999999999999986665 6999888877777776 5654332221 0112222 44
Q ss_pred HHHHhhcCCCcEEEEcCCC
Q 015347 194 ILGVMKNRYYDMVLSTKLA 212 (408)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~ 212 (408)
-.++|-.++.|+||-+..-
T Consensus 251 kAKRlVE~~kDVVILLDSI 269 (422)
T COG1158 251 KAKRLVEHGKDVVILLDSI 269 (422)
T ss_pred HHHHHHHcCCcEEEEehhH
Confidence 5666778899999987543
No 78
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=52.10 E-value=1.4e+02 Score=29.96 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=36.3
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCCCEEEe
Q 015347 289 SISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVI 357 (408)
Q Consensus 289 ~is~~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~~vvli 357 (408)
.+++++.+...+.+.+. +.+..+|++.+.. - +..|.+.|++|++.+++.+.-|++
T Consensus 110 ~is~~~~~~~l~~~~~~-l~~~d~VvlsGSl-P------------~g~~~d~y~~li~~~~~~g~~vil 164 (310)
T COG1105 110 EISEAELEQFLEQLKAL-LESDDIVVLSGSL-P------------PGVPPDAYAELIRILRQQGAKVIL 164 (310)
T ss_pred CCCHHHHHHHHHHHHHh-cccCCEEEEeCCC-C------------CCCCHHHHHHHHHHHHhcCCeEEE
Confidence 56777766665666553 3445677775332 2 338999999999999988733333
No 79
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=51.90 E-value=2.2e+02 Score=27.11 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=43.4
Q ss_pred EEEEEcCC---ChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhc
Q 015347 124 RCCCIISG---GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (408)
Q Consensus 124 rILIIr~~---~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~ 200 (408)
|||+|... .=|=.-.+.-++++|.+... ++++++...................... .....+..+.+.+++
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~--~v~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 74 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGP--DVLVVSVAALYPSLLYGGEQEVVRVIVL----DNPLDYRRAARAIRL 74 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCC--eEEEEEeecccCcccCCCcccceeeeec----CCchhHHHHHHHHhh
Confidence 57777654 22445566678899988854 4555543333322222111111111111 123345567778889
Q ss_pred CCCcEEEEcC
Q 015347 201 RYYDMVLSTK 210 (408)
Q Consensus 201 ~~YDlvIdl~ 210 (408)
.+||+++...
T Consensus 75 ~~~dii~~~~ 84 (366)
T cd03822 75 SGPDVVVIQH 84 (366)
T ss_pred cCCCEEEEee
Confidence 9999999754
No 80
>PRK12678 transcription termination factor Rho; Provisional
Probab=51.75 E-value=1.2e+02 Score=33.38 Aligned_cols=100 Identities=10% Similarity=0.028 Sum_probs=68.6
Q ss_pred CCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEE-EEEECCCchHhhhcCCCCc-EEEEecCCCCCCC-----hHHHH
Q 015347 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLI-DVIASARGKQTFELNKNVR-WANVYDLDDDWPE-----PAEYT 192 (408)
Q Consensus 120 ~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~I-dvLv~~~~~~lle~~P~Vd-~Vi~~d~k~~~~~-----~~~~~ 192 (408)
+...|+|||-..+.|=..|..=++.++.+.+|++.+ .+|+.++...+=+...-|. +|+.-. .+.-.. ..--+
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT-~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST-FDRPPSDHTTVAELAI 492 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC-CCCCHHHHHHHHHHHH
Confidence 446899999999999999988888899899999984 5667888888855444442 344322 221010 01124
Q ss_pred HHHHHhhcCCCcEEEEcCCCChHHHHHHH
Q 015347 193 DILGVMKNRYYDMVLSTKLAGLGHAAFLF 221 (408)
Q Consensus 193 ~l~~~LR~~~YDlvIdl~~~~~~sall~~ 221 (408)
.+...++.+.+|++|.+..- .+.+-...
T Consensus 493 ~~Ae~fre~G~dVlillDSl-TR~ArAyr 520 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSI-TRLGRAYN 520 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCc-hHHHHHHH
Confidence 56677899999999988666 55544433
No 81
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=51.67 E-value=4 Score=36.91 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=38.8
Q ss_pred cEEEEEcCCChhHHHHHH-HHHHHHHHHCCCcEEEEEECCCchHhhhc
Q 015347 123 RRCCCIISGGVYENLLFF-PAIQLLKDRYPGVLIDVIASARGKQTFEL 169 (408)
Q Consensus 123 ~rILIIr~~~IGDvILtt-PvI~aLK~~yP~A~IdvLv~~~~~~lle~ 169 (408)
+|| .+...+-||.+.-| -++..||+.||+.+|+++.++.+.++++.
T Consensus 9 ~rI-aWgITGaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk~ 55 (187)
T COG1036 9 KRI-AWGITGAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVKM 55 (187)
T ss_pred ceE-EEEEeccccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHHH
Confidence 444 46677889988866 89999999999999999999999887764
No 82
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=51.44 E-value=28 Score=32.18 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=40.0
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhc
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL 169 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~ 169 (408)
++|||+..++++| .+.+.=+++.|++. .+++|++++++.+..++..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~-~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDV-GEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhh-cCCeEEEEECHHHHHHHHH
Confidence 4799999999999 78888899999875 3789999999999988764
No 83
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=51.25 E-value=99 Score=32.27 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=17.0
Q ss_pred CHHHHHH-hcc----cCEEEeCCChHHHHhc
Q 015347 381 TPGQLQI-QQP----YNLQTRVKSPALHCSA 406 (408)
Q Consensus 381 ~~~eLaA-i~~----adl~I~nDSGpmHLAa 406 (408)
+..+|.. |+. .++-||-||+-+|.|.
T Consensus 286 ~~eeL~~Iid~v~~~~rlGvCLDTcHafaAG 316 (413)
T PTZ00372 286 KFEDLRDIIALVEDKSRVGVCLDTCHLFAAG 316 (413)
T ss_pred CHHHHHHHHHhcCCcCCeEEEEEHHHHHhcC
Confidence 3455555 443 4688999999888653
No 84
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=51.01 E-value=83 Score=32.49 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=32.9
Q ss_pred cEEEEE---cCCChhHHHHHHHHHHHHHHHCCCcEEEEEECC
Q 015347 123 RRCCCI---ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (408)
Q Consensus 123 ~rILII---r~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~ 161 (408)
||+++. -.+..||-.+.--++++|++..|+++|.+++..
T Consensus 1 m~~~L~g~~g~gN~Gdeail~all~~l~~~~~~~~~~~~~~~ 42 (385)
T COG2327 1 MKALLLGYYGFGNIGDEAILKALLDMLRRLNPDAKVLVMGRR 42 (385)
T ss_pred CeeEEEeeecCCCcccHHHHHHHHHHHHhhCcccceeeeecC
Confidence 345553 357899999999999999999999999999863
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=50.12 E-value=2.4e+02 Score=27.08 Aligned_cols=101 Identities=17% Similarity=0.025 Sum_probs=47.2
Q ss_pred EEEEEcC-------CChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHh-hhcCCCCcEEEEecCCCC--CCC-hHHHH
Q 015347 124 RCCCIIS-------GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQT-FELNKNVRWANVYDLDDD--WPE-PAEYT 192 (408)
Q Consensus 124 rILIIr~-------~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~l-le~~P~Vd~Vi~~d~k~~--~~~-~~~~~ 192 (408)
||+||-. +|++.. ..-+.+.|.++ +.++++++....... ......|. ++.++.... ... ...+.
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~--~~~la~~L~~~--g~~v~v~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~ 75 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETF--VEELAPRLVAR--GHEVTVYCRSPYPKQKETEYNGVR-LIHIPAPEIGGLGTIIYDIL 75 (363)
T ss_pred CeEEEecCcCCcccCcHHHH--HHHHHHHHHhc--CCCEEEEEccCCCCCcccccCCce-EEEcCCCCccchhhhHHHHH
Confidence 5677733 344443 33667788866 578999986544322 23334554 444443321 011 11122
Q ss_pred HHHHHh-hcCCCcEEEEcCCCChHHHHHHHHhCCCeEE
Q 015347 193 DILGVM-KNRYYDMVLSTKLAGLGHAAFLFMTTARDRV 229 (408)
Q Consensus 193 ~l~~~L-R~~~YDlvIdl~~~~~~sall~~laga~~RI 229 (408)
.+++.+ ++.++|++..........+.++...|.+.-+
T Consensus 76 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 113 (363)
T cd04955 76 AILHALFVKRDIDHVHALGPAIAPFLPLLRLKGKKVVV 113 (363)
T ss_pred HHHHHHhccCCeEEEEecCccHHHHHHHHHhcCCCEEE
Confidence 233333 2456666666544421222233333555443
No 86
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=46.32 E-value=1e+02 Score=30.18 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=47.4
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcC
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~ 201 (408)
++||||.-.+.. + +++++|++...+.+|..+-.....+... ..|+.+..+.-.. ....-.++..++++
T Consensus 1 ~~~vLv~g~~~~---~---~~~~~l~~~~~g~~vi~~d~~~~~~~~~---~~d~~~~~p~~~~---~~~~~~l~~~~~~~ 68 (326)
T PRK12767 1 MMNILVTSAGRR---V---QLVKALKKSLLKGRVIGADISELAPALY---FADKFYVVPKVTD---PNYIDRLLDICKKE 68 (326)
T ss_pred CceEEEecCCcc---H---HHHHHHHHhccCCEEEEECCCCcchhhH---hccCcEecCCCCC---hhHHHHHHHHHHHh
Confidence 589999877543 2 7899999997777776665443333322 3454444443221 11223456667888
Q ss_pred CCcEEEEcC
Q 015347 202 YYDMVLSTK 210 (408)
Q Consensus 202 ~YDlvIdl~ 210 (408)
+.|.+|-..
T Consensus 69 ~id~ii~~~ 77 (326)
T PRK12767 69 KIDLLIPLI 77 (326)
T ss_pred CCCEEEECC
Confidence 999998753
No 87
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=45.46 E-value=54 Score=27.47 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=43.2
Q ss_pred EEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCC
Q 015347 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLD 182 (408)
Q Consensus 125 ILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k 182 (408)
|||+..+.-||+-=..++.++|+++ +.++.+.+.+..++.++.. .++ ...++..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r--Gh~V~~~~~~~~~~~v~~~-Gl~-~~~~~~~ 54 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR--GHEVRLATPPDFRERVEAA-GLE-FVPIPGD 54 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT--T-EEEEEETGGGHHHHHHT-T-E-EEESSSC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc--CCeEEEeecccceeccccc-Cce-EEEecCC
Confidence 7899999999999999999999998 7788899999999998554 333 4555543
No 88
>PRK12608 transcription termination factor Rho; Provisional
Probab=45.32 E-value=1e+02 Score=31.73 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=68.7
Q ss_pred CCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcE-EEEEECCCchHhhhcCCCCcEEEEecCCCC--CCC--hH-HHHH
Q 015347 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVL-IDVIASARGKQTFELNKNVRWANVYDLDDD--WPE--PA-EYTD 193 (408)
Q Consensus 120 ~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~-IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~--~~~--~~-~~~~ 193 (408)
+...|+||+-..+.|=..+.-=+++.+-+.+|++. +.+++..+...+-+....|..++.....+. ..+ .. ....
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~ 210 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLE 210 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHH
Confidence 44679999999999999999999999999999997 666788888776665555555554432211 011 11 2345
Q ss_pred HHHHhhcCCCcEEEEcCCCChHHH
Q 015347 194 ILGVMKNRYYDMVLSTKLAGLGHA 217 (408)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~~~~sa 217 (408)
++..++++.+|++|.+..- .+.+
T Consensus 211 ~Ae~f~~~GkdVVLvlDsl-tr~A 233 (380)
T PRK12608 211 RAKRLVEQGKDVVILLDSL-TRLA 233 (380)
T ss_pred HHHHHHHcCCCEEEEEeCc-HHHH
Confidence 6677888999999987655 4443
No 89
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=45.00 E-value=1.2e+02 Score=25.99 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=44.9
Q ss_pred hhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhC---C-CEEEeCCcchHHHHHHHHhcC---CCc
Q 015347 304 NAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREF---R-PLFVIPHEKEREGVEDVVGDD---ASI 376 (408)
Q Consensus 304 ~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~---~-~vvliggp~E~e~~~~I~~~~---~~~ 376 (408)
..+...++++++..|.-.. ..-.+.+.+++..+..+ . .++++|............... .++
T Consensus 8 ~~~~~~~~~~il~~g~~~~------------~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i 75 (172)
T PF00534_consen 8 KLKIPDKKKIILFIGRLDP------------EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENI 75 (172)
T ss_dssp HTTT-TTSEEEEEESESSG------------GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTE
T ss_pred HcCCCCCCeEEEEEecCcc------------ccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccc
Confidence 3444456677776665333 24577888888888642 2 566677333333333333221 223
Q ss_pred cccCCH--HHHHH-hcccCEEEeC
Q 015347 377 VFITTP--GQLQI-QQPYNLQTRV 397 (408)
Q Consensus 377 ~~i~~~--~eLaA-i~~adl~I~n 397 (408)
.++... .++.. ++.||++|..
T Consensus 76 ~~~~~~~~~~l~~~~~~~di~v~~ 99 (172)
T PF00534_consen 76 IFLGYVPDDELDELYKSSDIFVSP 99 (172)
T ss_dssp EEEESHSHHHHHHHHHHTSEEEE-
T ss_pred cccccccccccccccccceecccc
Confidence 222222 57888 8889988854
No 90
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=44.53 E-value=2.7e+02 Score=27.42 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=66.5
Q ss_pred cccccccccCCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhh------cCCCCcEE-EEecCCC
Q 015347 111 IASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE------LNKNVRWA-NVYDLDD 183 (408)
Q Consensus 111 ~~~~~~~~~~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle------~~P~Vd~V-i~~d~k~ 183 (408)
|+.|....+ ..|++|+-..+.|=..|..=+++.+++++.+..|-.++.++..++-+ .....++. ++....+
T Consensus 60 ID~l~pig~--GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d 137 (274)
T cd01133 60 IDLLAPYAK--GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMN 137 (274)
T ss_pred eeccCCccc--CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCC
Confidence 344444444 68999999999999999999999999999888888888888877533 22233433 3333222
Q ss_pred CCCChHH------HHHHHHHhhcC-CCcEEEEcCCC
Q 015347 184 DWPEPAE------YTDILGVMKNR-YYDMVLSTKLA 212 (408)
Q Consensus 184 ~~~~~~~------~~~l~~~LR~~-~YDlvIdl~~~ 212 (408)
. .-..+ -+.+..-+|.+ .+|+.|.+..-
T Consensus 138 ~-~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 138 E-PPGARARVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 2 21111 13455567777 89999987655
No 91
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=43.13 E-value=35 Score=26.34 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCC--CCCChHHHH
Q 015347 140 FPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDD--DWPEPAEYT 192 (408)
Q Consensus 140 tPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~--~~~~~~~~~ 192 (408)
.=+-++|.++||+..+.+...+.....|+-. ||..+.++++. +|+......
T Consensus 16 ~~l~q~L~~~Fp~~~v~~~~~~~~~G~Fev~--~~g~~v~sk~~~~~fp~~~~~~ 68 (72)
T TIGR02174 16 AWLKQELLEEFPDLEIEGENTPPTTGAFEVT--VNGQLVWSKLRGGGFPEPEELK 68 (72)
T ss_pred HHHHHHHHHHCCCCeeEEeeecCCCcEEEEE--ECCEEEEEeccCCCCCCHHHHH
Confidence 3456899999999988888776666666653 35566777653 355555443
No 92
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=42.36 E-value=49 Score=30.31 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=37.3
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhh
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle 168 (408)
+|||++..++++|=.- +.-+++.|++. +++|+++.++.++.++.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~--g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKR--GYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHC--CCEEEEEEChhHHHHcC
Confidence 4799999999998664 67889999875 88999999998888765
No 93
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=41.25 E-value=1.4e+02 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHhhCC--CEEEeCCcc
Q 015347 333 DSLLPIQVWAEIANGLREFR--PLFVIPHEK 361 (408)
Q Consensus 333 ~K~WP~e~waeLa~~L~~~~--~vvliggp~ 361 (408)
+|.|.-|.|++.++.+...+ -+|+|||++
T Consensus 77 Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG~~ 107 (155)
T COG1576 77 GKALSSEEFADFLERLRDDGRDISFLIGGAD 107 (155)
T ss_pred CCcCChHHHHHHHHHHHhcCCeEEEEEeCcc
Confidence 57899999999999998776 467889886
No 94
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=40.34 E-value=3.7e+02 Score=26.42 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=25.9
Q ss_pred cEEEEEcCC-ChhH-HHHHHHHHHHHHHHCCCcEEEEEECCC
Q 015347 123 RRCCCIISG-GVYE-NLLFFPAIQLLKDRYPGVLIDVIASAR 162 (408)
Q Consensus 123 ~rILIIr~~-~IGD-vILttPvI~aLK~~yP~A~IdvLv~~~ 162 (408)
||||++.++ .+|- --+.+=+.++|.++ +.+++++|...
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~--G~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSR--GHEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhC--CCeEEEEcCCC
Confidence 789999986 3443 23334467777765 77999998643
No 95
>PLN02448 UDP-glycosyltransferase family protein
Probab=39.82 E-value=65 Score=33.80 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=49.6
Q ss_pred cCCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcC---CCCcEEEEec
Q 015347 119 RGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELN---KNVRWANVYD 180 (408)
Q Consensus 119 ~~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~---P~Vd~Vi~~d 180 (408)
+++..+|+++-..+.|++.=++-+.+.|..++|+..||+++.+.+...++.. +.|+ ++.++
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~-fv~lp 70 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIR-FATIP 70 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEE-EEECC
Confidence 3567799999999999999999999999988889999999999887666654 3454 44554
No 96
>PRK05920 aromatic acid decarboxylase; Validated
Probab=39.41 E-value=56 Score=30.65 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=39.4
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhh
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle 168 (408)
.|||++-.++++|= +-+.-+++.|++. +++|.+++++.+..++.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~--g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAA--DYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHC--CCEEEEEEChhHHHHHH
Confidence 58999999999998 6999999999997 89999999999888664
No 97
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=39.18 E-value=1.9e+02 Score=25.28 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCCCcEEEEcCCC
Q 015347 133 VYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLA 212 (408)
Q Consensus 133 IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~YDlvIdl~~~ 212 (408)
-|......-+.+.|++. +.++++++ . ....+...+++.++|+++.-...
T Consensus 13 ~G~~~~~~~l~~~L~~~--g~~v~v~~------------------------~-----~~~~~~~~~~~~~~D~i~~~~~~ 61 (229)
T cd01635 13 GGVELVLLDLAKALARR--GHEVEVVA------------------------L-----LLLLLLRILRGFKPDVVHAHGYY 61 (229)
T ss_pred CCchhHHHHHHHHHHHc--CCeEEEEE------------------------e-----chHHHHHHHhhcCCCEEEEcCCC
Confidence 47777888899999886 77888888 1 11234456667899999987665
No 98
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=38.63 E-value=57 Score=27.09 Aligned_cols=88 Identities=14% Similarity=0.005 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCcEEEEEECCCchHhhh-cCCCCcEEEEecCCCC---CCChHHHHHHHHHh--hcCCCcEEEEcCCCC
Q 015347 140 FPAIQLLKDRYPGVLIDVIASARGKQTFE-LNKNVRWANVYDLDDD---WPEPAEYTDILGVM--KNRYYDMVLSTKLAG 213 (408)
Q Consensus 140 tPvI~aLK~~yP~A~IdvLv~~~~~~lle-~~P~Vd~Vi~~d~k~~---~~~~~~~~~l~~~L--R~~~YDlvIdl~~~~ 213 (408)
.=++++|.++ |.++++++........+ ....+ .++.++.... +..+..+..+.+.+ ++++||++.......
T Consensus 8 ~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~~~~~ 84 (160)
T PF13579_consen 8 RELARALAAR--GHEVTVVTPQPDPEDDEEEEDGV-RVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAHSPTA 84 (160)
T ss_dssp HHHHHHHHHT--T-EEEEEEE---GGG-SEEETTE-EEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEEHHHH
T ss_pred HHHHHHHHHC--CCEEEEEecCCCCcccccccCCc-eEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEecccch
Confidence 3457788887 77999999655554331 22233 3444443222 11223345555666 889999998754221
Q ss_pred hHHHHHHH-HhCCCeEEE
Q 015347 214 LGHAAFLF-MTTARDRVS 230 (408)
Q Consensus 214 ~~sall~~-laga~~RIG 230 (408)
...+.++. ..++|.-+-
T Consensus 85 ~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 85 GLVAALARRRRGIPLVVT 102 (160)
T ss_dssp HHHHHHHHHHHT--EEEE
T ss_pred hHHHHHHHHccCCcEEEE
Confidence 12222233 456665443
No 99
>cd08475 PBP2_CrgA_like_6 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene a
Probab=37.53 E-value=75 Score=27.11 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
+..+++..++++||+++|++.........+++ .+|=.+.+
T Consensus 15 ~l~~~l~~~~~~~P~v~i~i~~~~~~~~~l~~--~~D~~i~~ 54 (199)
T cd08475 15 CVAPLLLELARRHPELELELSFSDRFVDLIEE--GIDLAVRI 54 (199)
T ss_pred hHHHHHHHHHHHCCCeEEEEEeccchhhHhhc--CccEEEEe
Confidence 35589999999999999999765555555553 37866654
No 100
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=37.27 E-value=28 Score=29.78 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHCCCcEEE
Q 015347 136 NLLFFPAIQLLKDRYPGVLID 156 (408)
Q Consensus 136 vILttPvI~aLK~~yP~A~Id 156 (408)
-+...|+++++-.+||+|+|.
T Consensus 94 ~a~~~P~V~avL~~FPgA~I~ 114 (117)
T PF12362_consen 94 AARAHPLVKAVLAAFPGAEIV 114 (117)
T ss_pred HHHhCcHHHHHHHHCCCCEEE
Confidence 788899999999999999996
No 101
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=37.26 E-value=1.1e+02 Score=24.81 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=54.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchH--hhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhc
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQ--TFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~--lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~ 200 (408)
+||.||-.+.+|-.. +.++++..|+.+|..++++.... -+...-.+. .|+ +. -..+.+
T Consensus 1 i~v~iiG~G~~g~~~-----~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~---~~~------~~------~~ll~~ 60 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRH-----LRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP---VYT------DL------EELLAD 60 (120)
T ss_dssp EEEEEESTSHHHHHH-----HHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE---EES------SH------HHHHHH
T ss_pred CEEEEECCcHHHHHH-----HHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc---chh------HH------HHHHHh
Confidence 478899888886554 77888889999999999876543 233334444 332 11 124455
Q ss_pred CCCcEEEEcCCCChHHHHHHHHhCCC
Q 015347 201 RYYDMVLSTKLAGLGHAAFLFMTTAR 226 (408)
Q Consensus 201 ~~YDlvIdl~~~~~~sall~~laga~ 226 (408)
.+.|+|+..........++.....+.
T Consensus 61 ~~~D~V~I~tp~~~h~~~~~~~l~~g 86 (120)
T PF01408_consen 61 EDVDAVIIATPPSSHAEIAKKALEAG 86 (120)
T ss_dssp TTESEEEEESSGGGHHHHHHHHHHTT
T ss_pred hcCCEEEEecCCcchHHHHHHHHHcC
Confidence 68999999877745555554444433
No 102
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.88 E-value=4.6e+02 Score=26.55 Aligned_cols=235 Identities=14% Similarity=0.096 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEEE--CCCchHhhhcCCCCcEEEEecCCCCCC-Ch----HHHHHHHHHhhcCCCcEEEEcC
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIA--SARGKQTFELNKNVRWANVYDLDDDWP-EP----AEYTDILGVMKNRYYDMVLSTK 210 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv--~~~~~~lle~~P~Vd~Vi~~d~k~~~~-~~----~~~~~l~~~LR~~~YDlvIdl~ 210 (408)
++-++|..|+++= .+|-+.| ...-.++++.-....++|.=+...... .+ .....|.+..++.+.|+++- .
T Consensus 15 fFk~lI~elekkG--~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i~-~ 91 (346)
T COG1817 15 FFKNLIWELEKKG--HEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAIG-K 91 (346)
T ss_pred HHHHHHHHHHhCC--eEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEee-c
Confidence 4458889999883 3444444 334446777766665665422111111 11 12234555667889999998 4
Q ss_pred CCChHHHHHHHHhCCCeEEEecCCCccccccc---ccceeeeccCcCCcchhHHHHHHHHHHHcCCC-CCCCCCCCCC-C
Q 015347 211 LAGLGHAAFLFMTTARDRVSYIYPNVNAAGAG---LLLSETFTAESMNLSERGYNMYEQMVDWLGRP-FRSVPRHPVP-P 285 (408)
Q Consensus 211 ~~~~~sall~~laga~~RIG~~~~~~~~~~~~---~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~-~~~~p~~~~p-~ 285 (408)
.+ ...+-++|..|.+ .|++....+ ...++ +-++..+-.+. .++. .-+..+|-. .+-++-+... -
T Consensus 92 ~s-~~l~rvafgLg~p-sIi~~D~eh-A~~qnkl~~Pla~~ii~P~------~~~~--~~~~~~G~~p~~i~~~~giae~ 160 (346)
T COG1817 92 HS-PELPRVAFGLGIP-SIIFVDNEH-AEAQNKLTLPLADVIITPE------AIDE--EELLDFGADPNKISGYNGIAEL 160 (346)
T ss_pred CC-cchhhHHhhcCCc-eEEecCChh-HHHHhhcchhhhhheeccc------ccch--HHHHHhCCCccceecccceeEE
Confidence 45 7778888899988 577762221 11111 11222222111 1222 223345542 1111100000 0
Q ss_pred Cccc-cCHHHHHHHHHHHHhhCCCC-CCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCCCEEEeCCcchH
Q 015347 286 LRVS-ISRRLKEVVAEKYKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKER 363 (408)
Q Consensus 286 ~~i~-is~~~~~~a~~~l~~~g~~~-~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~~vvliggp~E~ 363 (408)
..++ ..++ .+.++++|+.. .+||++-|-+..+. -..|+. -.+--.++++.|.+.+ +|++..+++.
T Consensus 161 ~~v~~f~pd-----~evlkeLgl~~~~~yIVmRpe~~~A~---y~~g~~----~~~~~~~li~~l~k~g-iV~ipr~~~~ 227 (346)
T COG1817 161 ANVYGFVPD-----PEVLKELGLEEGETYIVMRPEPWGAH---YDNGDR----GISVLPDLIKELKKYG-IVLIPREKEQ 227 (346)
T ss_pred eecccCCCC-----HHHHHHcCCCCCCceEEEeeccccce---eecccc----chhhHHHHHHHHHhCc-EEEecCchhH
Confidence 0111 1111 14578889985 58999998653332 111211 1334667888887776 7788776643
Q ss_pred HH-HHHHHhcCCCccccCCHHHHHHhcccCEEEeCCChHHH
Q 015347 364 EG-VEDVVGDDASIVFITTPGQLQIQQPYNLQTRVKSPALH 403 (408)
Q Consensus 364 e~-~~~I~~~~~~~~~i~~~~eLaAi~~adl~I~nDSGpmH 403 (408)
+. .+...........+ +.|..+-.|+++|| ++|-|-
T Consensus 228 ~eife~~~n~i~pk~~v---D~l~Llyya~lvig-~ggTMa 264 (346)
T COG1817 228 AEIFEGYRNIIIPKKAV---DTLSLLYYATLVIG-AGGTMA 264 (346)
T ss_pred HHHHhhhccccCCcccc---cHHHHHhhhheeec-CCchHH
Confidence 32 22221111100001 22223777888886 456554
No 103
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=36.83 E-value=2.5e+02 Score=28.27 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=49.4
Q ss_pred ccccccCCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHH
Q 015347 114 LPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTD 193 (408)
Q Consensus 114 ~~~~~~~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~ 193 (408)
|+..+-...|+||||-.+.+ ..+++.++++. +.++.++......+-.. ..|+.+..|..+ . -.
T Consensus 4 ~~~~~~~~~~~ilIiG~g~~-----~~~~~~a~~~~--G~~v~~~~~~~~~~~~~---~ad~~~~~~~~d----~---~~ 66 (395)
T PRK09288 4 LGTPLSPSATRVMLLGSGEL-----GKEVAIEAQRL--GVEVIAVDRYANAPAMQ---VAHRSHVIDMLD----G---DA 66 (395)
T ss_pred ccCCCCCCCCEEEEECCCHH-----HHHHHHHHHHC--CCEEEEEeCCCCCchHH---hhhheEECCCCC----H---HH
Confidence 45555455689999977654 44567777775 77777776544333222 345555555322 1 23
Q ss_pred HHHHhhcCCCcEEEEcCCC
Q 015347 194 ILGVMKNRYYDMVLSTKLA 212 (408)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~ 212 (408)
++..+++++.|.++.....
T Consensus 67 l~~~~~~~~id~vi~~~e~ 85 (395)
T PRK09288 67 LRAVIEREKPDYIVPEIEA 85 (395)
T ss_pred HHHHHHHhCCCEEEEeeCc
Confidence 4455667889999976544
No 104
>PF12466 GDH_N: Glutamate dehydrogenase N terminal; InterPro: IPR024727 Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia []. This entry represents a domain found in the N-terminal region of a bacterial family of putative GDHs.
Probab=35.49 E-value=20 Score=26.55 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHCCCcE
Q 015347 137 LLFFPAIQLLKDRYPGVL 154 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~ 154 (408)
+-.-|++.+||++||-++
T Consensus 33 v~LepVfaALRkryPaa~ 50 (60)
T PF12466_consen 33 VSLEPVFAALRKRYPAAR 50 (60)
T ss_pred cchhHHHHHHHHhCcHHH
Confidence 445599999999999764
No 105
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=35.46 E-value=2.7e+02 Score=26.89 Aligned_cols=90 Identities=11% Similarity=0.079 Sum_probs=54.9
Q ss_pred CccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch------HhhhcCCCCcEEEEecCCCCCCChHHHHHH
Q 015347 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK------QTFELNKNVRWANVYDLDDDWPEPAEYTDI 194 (408)
Q Consensus 121 ~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~------~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l 194 (408)
++++|||.- ++.+---++..++++|.+..++.+|++++.+... ...+..++|. ++.+. -++
T Consensus 169 ~~~~iLi~~-GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~-~~~~~-----------~~m 235 (279)
T TIGR03590 169 PLRRVLVSF-GGADPDNLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNII-LFIDV-----------ENM 235 (279)
T ss_pred ccCeEEEEe-CCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEE-EEeCH-----------HHH
Confidence 356676554 4444433788899999987788999999976542 3344556553 33221 123
Q ss_pred HHHhhcCCCcEEEEcCCCChHHHHHHHHhCCCeE
Q 015347 195 LGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDR 228 (408)
Q Consensus 195 ~~~LR~~~YDlvIdl~~~~~~sall~~laga~~R 228 (408)
...|+ .-|++|...+ .+..=+...|.|.-
T Consensus 236 ~~lm~--~aDl~Is~~G---~T~~E~~a~g~P~i 264 (279)
T TIGR03590 236 AELMN--EADLAIGAAG---STSWERCCLGLPSL 264 (279)
T ss_pred HHHHH--HCCEEEECCc---hHHHHHHHcCCCEE
Confidence 33343 4899999644 34555666788843
No 106
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=35.09 E-value=1.2e+02 Score=30.39 Aligned_cols=109 Identities=8% Similarity=0.142 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhCCCCCCeEEEEcCCCCchhhccCCCCCCCCCCHH--HHHHHHHHH---hhCC---CEEEeCCcchHH
Q 015347 293 RLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQ--VWAEIANGL---REFR---PLFVIPHEKERE 364 (408)
Q Consensus 293 ~~~~~a~~~l~~~g~~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e--~waeLa~~L---~~~~---~vvliggp~E~e 364 (408)
+-++.++.++++. ..+...|++|.-.+...++|.. +.-|-.+ ...++...+ +.+. ++-++-.-+..+
T Consensus 151 eIqarID~iy~eh-f~g~~~IGVHVRhGngeD~~~h----~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSae 225 (321)
T PF05830_consen 151 EIQARIDAIYREH-FAGYSVIGVHVRHGNGEDIMDH----APYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSAE 225 (321)
T ss_dssp HHHHHHHHHHHHH-TTTSEEEEEEE-------------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-HH
T ss_pred HHHHHHHHHHHHH-cCCCceEEEEEeccCCcchhcc----CccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcHH
Confidence 3445566666555 2334579999865555556632 2335443 223344333 3222 466666777778
Q ss_pred HHHHHHhcCCCccccC------------CH--------H---HHHHhcccCEEE--eCCChHHHHhc
Q 015347 365 GVEDVVGDDASIVFIT------------TP--------G---QLQIQQPYNLQT--RVKSPALHCSA 406 (408)
Q Consensus 365 ~~~~I~~~~~~~~~i~------------~~--------~---eLaAi~~adl~I--~nDSGpmHLAa 406 (408)
.++++...++++..+. +. + ++..+++||.+| +..|+-.=+|+
T Consensus 226 Vid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~as 292 (321)
T PF05830_consen 226 VIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYAS 292 (321)
T ss_dssp HHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHH
T ss_pred HHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHH
Confidence 8888887776543210 00 1 222399999999 77887766654
No 107
>cd08471 PBP2_CrgA_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 2. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene a
Probab=35.01 E-value=84 Score=26.92 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
-+..+++..++++||+++|++........+++ ..+|=.+.+
T Consensus 14 ~~l~~~l~~~~~~~P~v~i~i~~~~~~~~~~~--~~~Dl~i~~ 54 (201)
T cd08471 14 LHVLPIITDFLDAYPEVSVRLLLLDRVVNLLE--EGVDVAVRI 54 (201)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEcCccchhhc--ccccEEEEe
Confidence 34668999999999999999987554444443 367765654
No 108
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=34.75 E-value=1.3e+02 Score=27.30 Aligned_cols=36 Identities=8% Similarity=0.091 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhhcCCCcEEEEcCCC-ChHHHHHHHHh
Q 015347 188 PAEYTDILGVMKNRYYDMVLSTKLA-GLGHAAFLFMT 223 (408)
Q Consensus 188 ~~~~~~l~~~LR~~~YDlvIdl~~~-~~~sall~~la 223 (408)
+..++.-++.++++++|++|..... +.-.++++++.
T Consensus 78 l~~~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~ 114 (170)
T PF08660_consen 78 LRAFLQSLRILRRERPDVIISNGPGTCVPVCLAAKLL 114 (170)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHH
Confidence 3445566667888999999987444 23445555555
No 109
>PRK06455 riboflavin synthase; Provisional
Probab=34.56 E-value=85 Score=28.24 Aligned_cols=42 Identities=14% Similarity=-0.122 Sum_probs=31.9
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK 164 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~ 164 (408)
++||.||...+==+ .|..-+++.|++.-+++.|+++.-|...
T Consensus 1 ~~kigIV~s~fn~~-~L~~gAi~~L~~~g~~~~I~v~~VPGa~ 42 (155)
T PRK06455 1 MMKIGIADTTFARV-DMGSAAIDELRKLDPSAKIIRYTVPGIK 42 (155)
T ss_pred CcEEEEEEEecchH-HHHHHHHHHHHhcCCCCceEEEECCCHH
Confidence 47888888766555 5668999999998788888777655543
No 110
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins []. This domain is found in members of the LysR family of prokaryotic transcriptional regulatory proteins IPR000847 from INTERPRO which share sequence similarities over approximately 280 residues including a putative helix-turn-helix DNA-binding motif at their N terminus.; PDB: 3ONM_B 3FZJ_J 3FXR_B 3N6T_A 3FXQ_A 3FXU_A 3N6U_A 2QSX_B 3HO7_B 1IZ1_B ....
Probab=34.49 E-value=70 Score=27.73 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=27.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECC
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~ 161 (408)
+..|-|-....-...+..+++..+++.||+.+|++....
T Consensus 5 ~~~l~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~~~~~~ 43 (209)
T PF03466_consen 5 RGTLRIGASPSFASSLLPPLLAEFRERHPNIRIEIREGD 43 (209)
T ss_dssp EEEEEEEEEHHHHHHTHHHHHHHHHHHSTTEEEEEEEES
T ss_pred ceEEEEEEEhHHHHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 333433333333366778999999999999999887643
No 111
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=34.43 E-value=1.6e+02 Score=30.28 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHCCCcEEEEEECCCch---Hh-------h--hcCCCCcEEEEe---c--CCCCCCChH-------
Q 015347 134 YENLLFFPAIQLLKDRYPGVLIDVIASARGK---QT-------F--ELNKNVRWANVY---D--LDDDWPEPA------- 189 (408)
Q Consensus 134 GDvILttPvI~aLK~~yP~A~IdvLv~~~~~---~l-------l--e~~P~Vd~Vi~~---d--~k~~~~~~~------- 189 (408)
||=||-- ++.+|+++.|+.+|++.+..... .+ | +....++-|+.. + .++.|.++.
T Consensus 16 ~ervl~~-a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 94 (419)
T cd03806 16 GERVLWC-AVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLLGQALG 94 (419)
T ss_pred chHHHHH-HHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeHHHHHH
Confidence 3555544 47778888999999999865333 12 2 222333323331 1 112233321
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCCChHHHHHHHHhCCCeEEEec
Q 015347 190 EYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYI 232 (408)
Q Consensus 190 ~~~~l~~~LR~~~YDlvIdl~~~~~~sall~~laga~~RIG~~ 232 (408)
..+..++.+.+.++|++|+.++-+....++.++.+++ .|.|.
T Consensus 95 ~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~-~i~y~ 136 (419)
T cd03806 95 SMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCP-VGAYV 136 (419)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCe-EEEEe
Confidence 1222233344457999999886634444444456664 56666
No 112
>cd08422 PBP2_CrgA_like The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own
Probab=34.19 E-value=78 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d 180 (408)
+..++++.++++||+.+|++.+......++++ .+|=.+...
T Consensus 15 ~l~~~l~~~~~~~P~v~i~i~~~~~~~~l~~~--~~D~~i~~~ 55 (197)
T cd08422 15 HLAPLLAEFLARYPDVRLELVLSDRLVDLVEE--GFDLAIRIG 55 (197)
T ss_pred HHHHHHHHHHHhCCceEEEEecCccccchhhc--CccEEEEeC
Confidence 35688999999999999999875544444443 488666543
No 113
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=33.94 E-value=2.4e+02 Score=28.64 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=55.5
Q ss_pred CCccEEEEEcCC-ChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHh
Q 015347 120 GDVRRCCCIISG-GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVM 198 (408)
Q Consensus 120 ~~~~rILIIr~~-~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~L 198 (408)
..-++|||+--+ ++| +-+||..|... -+.|.-.++....++.+..- .|+|+.|+. . ++...++..
T Consensus 156 ~~g~~vLv~ggsggVG-----~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lG-Ad~vvdy~~--~-----~~~e~~kk~ 221 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVG-----TAAIQLAKHAG-AIKVVTACSKEKLELVKKLG-ADEVVDYKD--E-----NVVELIKKY 221 (347)
T ss_pred CCCCeEEEEeCCcHHH-----HHHHHHHHhcC-CcEEEEEcccchHHHHHHcC-CcEeecCCC--H-----HHHHHHHhh
Confidence 445788887765 777 44678788776 67888888999999998887 567876653 1 233344443
Q ss_pred hcCCCcEEEEcCCC
Q 015347 199 KNRYYDMVLSTKLA 212 (408)
Q Consensus 199 R~~~YDlvIdl~~~ 212 (408)
....||+++|.-+.
T Consensus 222 ~~~~~DvVlD~vg~ 235 (347)
T KOG1198|consen 222 TGKGVDVVLDCVGG 235 (347)
T ss_pred cCCCccEEEECCCC
Confidence 35589999998655
No 114
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=33.89 E-value=2.3e+02 Score=29.40 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=24.7
Q ss_pred EcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCc
Q 015347 128 IISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG 163 (408)
Q Consensus 128 Ir~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~ 163 (408)
++.+|+||++-.+| ++|++. |.++++++....
T Consensus 14 ~k~GGl~~~v~~L~--~aL~~~--G~~v~v~~p~y~ 45 (473)
T TIGR02095 14 AKTGGLADVVGALP--KALAAL--GHDVRVLLPAYG 45 (473)
T ss_pred cCcCcHHHHHHHHH--HHHHHc--CCeEEEEecCCc
Confidence 34799999999887 677766 778988885443
No 115
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=33.46 E-value=74 Score=29.88 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=37.0
Q ss_pred ccEEEEEcCCChhHH----HHHHHHHHHHHHHCCCcEEEEEECCCchHhh-hcCCCCcEE
Q 015347 122 VRRCCCIISGGVYEN----LLFFPAIQLLKDRYPGVLIDVIASARGKQTF-ELNKNVRWA 176 (408)
Q Consensus 122 ~~rILIIr~~~IGDv----ILttPvI~aLK~~yP~A~IdvLv~~~~~~ll-e~~P~Vd~V 176 (408)
++|+|+|..+-.||. .|+.-+++..|+.+|+.+|..+- |+ +..|++|.-
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~D------L~~e~iP~ld~~ 54 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERD------LAAEPIPHLDEE 54 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEee------cccCCCcccCHH
Confidence 468999999988885 55567888999999999888763 22 456777744
No 116
>PRK08462 biotin carboxylase; Validated
Probab=32.77 E-value=1.4e+02 Score=30.96 Aligned_cols=83 Identities=13% Similarity=0.020 Sum_probs=52.5
Q ss_pred CccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhc
Q 015347 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN 200 (408)
Q Consensus 121 ~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~ 200 (408)
+.+||||+..+-+ ..|+++++|+. |.++..+....... ......-|+.+.+............-.++...++
T Consensus 3 ~~k~ili~~~g~~-----~~~~~~~~~~~--G~~~v~~~~~~d~~-~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~ 74 (445)
T PRK08462 3 EIKRILIANRGEI-----ALRAIRTIQEM--GKEAIAIYSTADKD-ALYLKYADAKICIGGAKSSESYLNIPAIISAAEI 74 (445)
T ss_pred CCCEEEEECCcHH-----HHHHHHHHHHc--CCCEEEEechhhcC-CchhhhCCEEEEeCCCchhcccCCHHHHHHHHHH
Confidence 4789999988766 56999999998 66766665443321 1223345677766432210111122356777788
Q ss_pred CCCcEEEEcCC
Q 015347 201 RYYDMVLSTKL 211 (408)
Q Consensus 201 ~~YDlvIdl~~ 211 (408)
++.|.++-..+
T Consensus 75 ~~~D~i~pg~g 85 (445)
T PRK08462 75 FEADAIFPGYG 85 (445)
T ss_pred cCCCEEEECCC
Confidence 99999997653
No 117
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=32.40 E-value=3.7e+02 Score=27.42 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=54.6
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhh--cCCCCcEEEEecCCC-CCCCh-H--------
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVYDLDD-DWPEP-A-------- 189 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle--~~P~Vd~Vi~~d~k~-~~~~~-~-------- 189 (408)
.+|++++-...+|=-.-..-..++|.++ |.+|++++.....+..+ ....|. ++.+..+. ..... .
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~--G~~V~ii~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKH--GWKVDLVGYLETPPHDEILSNPNIT-IHPLPPPPQRLNKLPFLLFAPLKV 79 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhc--CceEEEEEecCCCCCHHHhcCCCEE-EEECCCCccccccchHHHHHHHHH
Confidence 4677777766554434445577788775 67999999765432222 234454 44444332 11111 1
Q ss_pred --HHHHHHHH-hhcCCCcEEEEcCCCChH----HHHHHHHhCCCeEE
Q 015347 190 --EYTDILGV-MKNRYYDMVLSTKLAGLG----HAAFLFMTTARDRV 229 (408)
Q Consensus 190 --~~~~l~~~-LR~~~YDlvIdl~~~~~~----sall~~laga~~RI 229 (408)
.++.+++. ++++++|+++........ ..++.++.+++.-+
T Consensus 80 ~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~ 126 (415)
T cd03816 80 LWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLII 126 (415)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEE
Confidence 11233332 455789999865433222 22235556766443
No 118
>cd08488 PBP2_AmpR The C-terminal substrate domain of LysR-type transcriptional regulator AmpR that involved in control of the expression of beta-lactamase gene ampC, contains the type 2 periplasmic binding fold. AmpR acts as a transcriptional activator by binding to a DNA region immediately upstream of the ampC promoter. In the absence of a beta-lactam inducer, AmpR represses the synthesis of beta-lactamase, whereas expression is induced in the presence of a beta-lactam inducer. The AmpD, AmpG, and AmpR proteins are involved in the induction of AmpC-type beta-lactamase (class C) which produced by enterobacterial strains and many other gram-negative bacilli. The activation of ampC by AmpR requires ampG for induction or high-level expression of AmpC. It is probable that the AmpD and AmpG work together to modulate the ability of AmpR to activate ampC expression. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsibl
Probab=32.16 E-value=89 Score=26.86 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 139 FFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 139 ttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
..|++++++++||+++|++........+.++ .+|=.+..
T Consensus 15 l~~~l~~f~~~~P~v~i~~~~~~~~~~l~~~--~~D~~i~~ 53 (191)
T cd08488 15 LLPRLADFQNRHPFIDLRLSTNNNRVDIAAE--GLDYAIRF 53 (191)
T ss_pred HHhHHHHHHHHCCCcEEEEEecCCccccCCC--CccEEEEe
Confidence 3579999999999999999875544444432 46655543
No 119
>PRK00170 azoreductase; Reviewed
Probab=32.15 E-value=74 Score=28.82 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=29.1
Q ss_pred ccEEEEEcCCChhH----HHHHHHHHHHHHHHCCCcEEEEEE
Q 015347 122 VRRCCCIISGGVYE----NLLFFPAIQLLKDRYPGVLIDVIA 159 (408)
Q Consensus 122 ~~rILIIr~~~IGD----vILttPvI~aLK~~yP~A~IdvLv 159 (408)
+||||+|.-+--.+ ..|+--+++.|++.+|+.+|+++-
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~d 42 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRD 42 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 47899988764333 346667899999999999998874
No 120
>cd08477 PBP2_CrgA_like_8 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 8. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene a
Probab=32.11 E-value=1.6e+02 Score=24.93 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
+..++++.++++||+++|.+........++++ .+|=++..
T Consensus 15 ~l~~~l~~~~~~~P~i~l~i~~~~~~~~~~~~--~~D~~i~~ 54 (197)
T cd08477 15 VLTPALAEYLARYPDVRVDLVLSDRLVDLVEE--GFDAAFRI 54 (197)
T ss_pred HHHHHHHHHHHHCCCcEEEEEecCCcchhhhc--CccEEEEC
Confidence 34589999999999999999875444454443 47766654
No 121
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=32.03 E-value=1.4e+02 Score=30.92 Aligned_cols=81 Identities=10% Similarity=-0.005 Sum_probs=47.8
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcC
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~ 201 (408)
++||||+..+-+| .++++++|+. +.++..+........ ......|+.+.+............-.++...+++
T Consensus 2 ~k~iLi~g~g~~a-----~~i~~aa~~~--G~~vv~~~~~~d~~a-~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~ 73 (451)
T PRK08591 2 FDKILIANRGEIA-----LRIIRACKEL--GIKTVAVHSTADRDA-LHVQLADEAVCIGPAPSKKSYLNIPAIISAAEIT 73 (451)
T ss_pred cceEEEECCCHHH-----HHHHHHHHHc--CCeEEEEcChhhccC-CCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHh
Confidence 5899999777664 7888899987 667666654433211 1113466766653221101111223456667788
Q ss_pred CCcEEEEcC
Q 015347 202 YYDMVLSTK 210 (408)
Q Consensus 202 ~YDlvIdl~ 210 (408)
+.|.++-..
T Consensus 74 ~id~I~p~~ 82 (451)
T PRK08591 74 GADAIHPGY 82 (451)
T ss_pred CCCEEEECC
Confidence 999998654
No 122
>cd08472 PBP2_CrgA_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene a
Probab=31.80 E-value=1e+02 Score=26.48 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
+..++++.++++||+++|.+........++++ .+|=.+..
T Consensus 15 ~l~~~l~~~~~~~P~i~v~~~~~~~~~~~l~~--~~D~~i~~ 54 (202)
T cd08472 15 LLIPALPDFLARYPDIELDLGVSDRPVDLIRE--GVDCVIRV 54 (202)
T ss_pred HHHHHHHHHHHHCCCcEEEEEECCCcchhhcc--cccEEEEc
Confidence 45688999999999999999765555555553 48866654
No 123
>cd08479 PBP2_CrgA_like_9 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 9. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene a
Probab=31.71 E-value=1.5e+02 Score=25.37 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 136 NLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 136 vILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
.-+..++++.++++||+++|++.+......+. ...+|=.+..
T Consensus 13 ~~~l~~~l~~f~~~~P~i~i~~~~~~~~~~l~--~g~~Dl~i~~ 54 (198)
T cd08479 13 RRHIAPALSDFAKRYPELEVQLELTDRPVDLV--EEGFDLDIRV 54 (198)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCcccccc--ccCccEEEEc
Confidence 35567899999999999999998754332222 2356655543
No 124
>cd08476 PBP2_CrgA_like_7 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 7. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene a
Probab=31.66 E-value=89 Score=26.50 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec
Q 015347 139 FFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (408)
Q Consensus 139 ttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d 180 (408)
..|+++.++++||+.+|.+.........+.+ .+|=.+...
T Consensus 14 l~~~l~~~~~~~P~v~i~~~~~~~~~~~l~~--~~D~~i~~~ 53 (197)
T cd08476 14 LLPVLAAFMQRYPEIELDLDFSDRLVDVIDE--GFDAVIRTG 53 (197)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCccccccc--CeeEEEEeC
Confidence 4589999999999999999754444444433 377666543
No 125
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=31.55 E-value=2e+02 Score=30.13 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=59.6
Q ss_pred CCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEE-EEECCCchHhhhcCCCCcEEEEecCCCCCCC-----hHHHHH
Q 015347 120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLID-VIASARGKQTFELNKNVRWANVYDLDDDWPE-----PAEYTD 193 (408)
Q Consensus 120 ~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~Id-vLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~-----~~~~~~ 193 (408)
+...|+||+-+.+.|=+.|..=+...+.+.++++.+- +++.++...+.+....|..++++...+.-.. ....+.
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 4468999999999999999999999999888998844 4556654554443333322333332222011 112345
Q ss_pred HHHHhhcCCCcEEEEcCCC
Q 015347 194 ILGVMKNRYYDMVLSTKLA 212 (408)
Q Consensus 194 l~~~LR~~~YDlvIdl~~~ 212 (408)
....++.+..|++|-+..-
T Consensus 247 ~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHcCCCEEEEEECh
Confidence 5666777889998876443
No 126
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=31.34 E-value=2.6e+02 Score=27.69 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=25.2
Q ss_pred EEEEEcCC-ChhHH-HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhc
Q 015347 124 RCCCIISG-GVYEN-LLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL 169 (408)
Q Consensus 124 rILIIr~~-~IGDv-ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~ 169 (408)
|||++... ..|-+ -...-+.+.|++. +.++++++.......++.
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~--g~~v~~~~~~~~~~~~~~ 46 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDL--GVDTRWEVIKGDPEFFNV 46 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHc--CCCceEEecCCChhHHHH
Confidence 45555432 33333 3333667777764 679999886655555553
No 127
>cd08473 PBP2_CrgA_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 4. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene a
Probab=30.28 E-value=1.1e+02 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 132 GVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 132 ~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
.++.. +..++++.++++||+++|++........+++ ..+|=.+.+
T Consensus 12 ~~~~~-~l~~~l~~~~~~~P~i~i~~~~~~~~~~~~~--~~~D~~i~~ 56 (202)
T cd08473 12 ALAQE-LLAPLLPRFMAAYPQVRLQLEATNRRVDLIE--EGIDVALRV 56 (202)
T ss_pred HHHHH-HHHHHHHHHHHHCCCeEEEEEEcCCcccccc--cCccEEEEe
Confidence 34433 3458899999999999999987554444443 357766654
No 128
>cd08482 PBP2_TrpI The C-terminal substrate binding domain of LysR-type transcriptional regulator TrpI, which is involved in control of tryptophan synthesis, contains type 2 periplasmic binding fold. TrpI and indoleglycerol phosphate (InGP), are required to activate transcription of the trpBA, the genes for tryptophan synthase. The trpBA is induced by the InGp substrate, rather than by tryptophan, but the exact mechanism of the activation event is not known. This substrate-binding domain of TrpI shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cy
Probab=29.92 E-value=1.5e+02 Score=25.41 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
-+..+++..++++||+.+|++........+++ ..+|-.+..
T Consensus 13 ~~l~~~i~~f~~~~P~v~i~~~~~~~~~~~~~--~~~Dl~i~~ 53 (195)
T cd08482 13 RWLIPRLPAFQAALPDIDLQLSASDGPVDSLR--DGIDAAIRF 53 (195)
T ss_pred HHHHhhHHHHHHHCCCceEEEEecCCcccccc--CCcCEEEEc
Confidence 35668999999999999999987543333333 246655543
No 129
>cd08446 PBP2_Chlorocatechol The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of LysR-type regulators CbnR, ClcR and TfdR, which are involved in the regulation of chlorocatechol breakdown. The chlorocatechol-degradative pathway is often found in bacteria that can use chlorinated aromatic compounds as carbon and energy sources. CbnR is found in the 3-chlorobenzoate degradative bacterium Ralstonia eutropha NH9 and forms a tetramer. CbnR activates the expression of the cbnABCD genes, which are responsible for the degradation of chlorocatechol converted from 3-chlorobenzoate and are transcribed divergently from cbnR. In soil bacterium Pseudomonas putida, the 3-chlorocatechol-degradative pathway is encoded by clcABD operon, which requires the divergently transcribed clcR for activation. TfdR is involved in the activation of tf
Probab=29.90 E-value=98 Score=26.50 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHHHHHHHHCCCcEEEEEEC
Q 015347 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 130 ~~~IGDvILttPvI~aLK~~yP~A~IdvLv~ 160 (408)
...++..+ ..++++.++++||+++|++...
T Consensus 8 ~~~~~~~~-l~~~i~~~~~~~P~v~l~i~~~ 37 (198)
T cd08446 8 FGSAILDT-VPRLLRAFLTARPDVTVSLHNM 37 (198)
T ss_pred chHHHHHH-HHHHHHHHHHHCCCeEEEEeeC
Confidence 34444444 4799999999999999999764
No 130
>PLN02316 synthase/transferase
Probab=29.63 E-value=1.8e+02 Score=34.04 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=34.9
Q ss_pred cccccCCccEEEEE--------cCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCc
Q 015347 115 PLKIRGDVRRCCCI--------ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG 163 (408)
Q Consensus 115 ~~~~~~~~~rILII--------r~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~ 163 (408)
+...+...||||.| +.+||||++-.+| ++|.+. |.+|++++..+.
T Consensus 580 g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp--~ALa~~--Gh~V~VitP~Y~ 632 (1036)
T PLN02316 580 GGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLS--RAVQDL--NHNVDIILPKYD 632 (1036)
T ss_pred CCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHH--HHHHHc--CCEEEEEecCCc
Confidence 55556677999965 5899999999987 677765 678998887654
No 131
>cd08470 PBP2_CrgA_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene
Probab=29.33 E-value=1.3e+02 Score=25.74 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d 180 (408)
+..+++..++++||+.+|.+........++++ .+|=.+...
T Consensus 15 ~l~~~l~~f~~~~P~v~l~i~~~~~~~~~~~~--~~D~~i~~~ 55 (197)
T cd08470 15 FIAPLVNDFMQRYPKLEVDIELTNRVVDLVSE--GFDLAIRLG 55 (197)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCccchhcc--CccEEEEcC
Confidence 45689999999999999999865444444443 578666543
No 132
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=29.24 E-value=1.5e+02 Score=34.69 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=53.7
Q ss_pred cCCccEEEEEcCCC--hhHH----HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHH
Q 015347 119 RGDVRRCCCIISGG--VYEN----LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYT 192 (408)
Q Consensus 119 ~~~~~rILIIr~~~--IGDv----ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~ 192 (408)
|.+.+|||||-.+. ||.. .-.+.++++||+. +.++.++.... ..+.......|+++..+.. .-
T Consensus 3 ~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~--G~~vi~v~~np-~~~~~~~~~aD~~y~~p~~--------~~ 71 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEE--GYRVILVNSNP-ATIMTDPEMADKVYIEPLT--------PE 71 (1050)
T ss_pred CCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHc--CCEEEEEecch-hhccCChhcCCEEEECCCC--------HH
Confidence 57899999999986 6632 3455889999986 77766665433 2233333456777654421 12
Q ss_pred HHHHHhhcCCCcEEEEcCC
Q 015347 193 DILGVMKNRYYDMVLSTKL 211 (408)
Q Consensus 193 ~l~~~LR~~~YDlvIdl~~ 211 (408)
.+.+.+++++.|.++-..+
T Consensus 72 ~v~~ii~~e~~DaIlp~~g 90 (1050)
T TIGR01369 72 AVEKIIEKERPDAILPTFG 90 (1050)
T ss_pred HHHHHHHHhCCCEEEECCC
Confidence 3455677899999997543
No 133
>cd08487 PBP2_BlaA The C-terminal substrate-binding domain of LysR-type trnascriptional regulator BlaA which involved in control of the beta-lactamase gene expression; contains the type 2 periplasmic binding fold. This CD represents the C-terminal substrate binding domain of LysR-type transcriptional regulator, BlaA, that involved in control of the expression of beta-lactamase genes, blaA and blaB. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. The blaA gene is located just upstream of blaB in the opposite direction and regulates the expression of the blaB. BlaA also negatively auto-regulates the expression of its own gene, blaA. BlaA (a constitutive class A penicllinase) belongs to the LysR family of transcriptional regulators, whereas BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin binding protein but it does not act as a beta-lactamase. The topology of this substrate-binding domain is
Probab=28.94 E-value=1.7e+02 Score=24.82 Aligned_cols=41 Identities=7% Similarity=0.125 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d 180 (408)
+..++++.++++||+.+|++........++.+ .+|=++...
T Consensus 14 ~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~~--~~Dl~i~~~ 54 (189)
T cd08487 14 WLLPRLAEFRQLHPFIELRLRTNNNVVDLATE--GLDFAIRFG 54 (189)
T ss_pred HHhHHHHHHHHHCCCceEEeeecCCccccccC--CcCEEEEec
Confidence 34578999999999999999865433333332 477666543
No 134
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=28.89 E-value=1.1e+02 Score=28.91 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=39.9
Q ss_pred cccccccccccCCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhc
Q 015347 109 PEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL 169 (408)
Q Consensus 109 ~~~~~~~~~~~~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~ 169 (408)
+|.++....+....+|||+...++|.=.= +.-+++.|++ +++|.++..+.+..++..
T Consensus 6 ~~~~~~~~~~~~~~k~IllgVtGSIAAyk-~~~lvr~L~~---g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 6 PEVDAMEVNTAPRKPRILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCccchhhccCCCCCEEEEEEeCHHHHHH-HHHHHHHhcC---CCeEEEEEChhHhhhcCH
Confidence 45555555555557899999988765322 2337788874 689999999988877753
No 135
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=28.45 E-value=1.1e+02 Score=28.05 Aligned_cols=44 Identities=32% Similarity=0.452 Sum_probs=33.6
Q ss_pred EEEEEcCCChhHHHH-HHHHHHHHHHHCCCcEEEEEECCCchHhhhc
Q 015347 124 RCCCIISGGVYENLL-FFPAIQLLKDRYPGVLIDVIASARGKQTFEL 169 (408)
Q Consensus 124 rILIIr~~~IGDvIL-ttPvI~aLK~~yP~A~IdvLv~~~~~~lle~ 169 (408)
||++-..+. |+.+. +.-+++.|++++ +++|+++.++.++.+++.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~-g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRY-GDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhc-CCEEEEEECHhHHHHHHH
Confidence 455555555 77766 668899999886 899999999999876553
No 136
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=28.04 E-value=2.9e+02 Score=27.66 Aligned_cols=93 Identities=10% Similarity=-0.045 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCC--------C-CChHHH---------
Q 015347 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD--------W-PEPAEY--------- 191 (408)
Q Consensus 130 ~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~--------~-~~~~~~--------- 191 (408)
....||+-=+.++.++|+++ |.+|++++.+.++..++.... ..+.++.... + ..+..+
T Consensus 3 ~p~~Ghv~P~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (392)
T TIGR01426 3 IPAHGHVNPTLGVVEELVAR--GHRVTYATTEEFAERVEAAGA--EFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAE 78 (392)
T ss_pred CCccccccccHHHHHHHHhC--CCeEEEEeCHHHHHHHHHcCC--EEEecCCcCccccccccccCcchHHHHHHHHHHHH
Confidence 46778888889999999998 789999999999988877532 2333332110 0 011111
Q ss_pred ---HHHHHHhhcCCCcEEEEcCCCChHHHHHHHHhCCCe
Q 015347 192 ---TDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARD 227 (408)
Q Consensus 192 ---~~l~~~LR~~~YDlvIdl~~~~~~sall~~laga~~ 227 (408)
-.+...+++.++|++|.-... .-...++...|+|.
T Consensus 79 ~~~~~l~~~~~~~~pDlVi~d~~~-~~~~~~A~~~giP~ 116 (392)
T TIGR01426 79 DVLPQLEEAYKGDRPDLIVYDIAS-WTGRLLARKWDVPV 116 (392)
T ss_pred HHHHHHHHHhcCCCCCEEEECCcc-HHHHHHHHHhCCCE
Confidence 113334566799999876555 55677788889984
No 137
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=27.90 E-value=6.6e+02 Score=25.59 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=111.3
Q ss_pred EEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcC-CCcE
Q 015347 127 CIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR-YYDM 205 (408)
Q Consensus 127 IIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~-~YDl 205 (408)
=|.++.||+-=-..+++++.|++-=-.+|.+=...-.+.+++..-... .. .....-++.++.|.+. -+|+
T Consensus 98 RINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t-------~e--amveSAl~~v~~le~~~F~di 168 (346)
T TIGR00612 98 RINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDAT-------AE--AMVQSALEEAAILEKLGFRNV 168 (346)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCC-------HH--HHHHHHHHHHHHHHHCCCCcE
Confidence 378999999999999999999998778888877777777777543210 00 1112234555666555 5688
Q ss_pred EEEcCCCChHHH-----HHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCCCCC
Q 015347 206 VLSTKLAGLGHA-----AFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPR 280 (408)
Q Consensus 206 vIdl~~~~~~sa-----ll~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~~p~ 280 (408)
+|++..+..... +++.....|..+|-. ..|. ..+-.++ ..+-.-.-|.+.+|=
T Consensus 169 viS~KsSdv~~~i~ayr~la~~~dyPLHlGVT-----EAG~--~~~G~IK--------Saigig~LL~~GIGD------- 226 (346)
T TIGR00612 169 VLSMKASDVAETVAAYRLLAERSDYPLHLGVT-----EAGM--GVKGIVK--------SSAGIGILLARGIGD------- 226 (346)
T ss_pred EEEEEcCCHHHHHHHHHHHHhhCCCCceeccc-----cCCC--CCCchhH--------HHHHHHHHHhhCCCC-------
Confidence 889877644332 333334455555554 3332 1222222 122111113344442
Q ss_pred CCCCCCccccCH---HHHHHHHHHHHhhCCCC-CCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHH-HhhCC---
Q 015347 281 HPVPPLRVSISR---RLKEVVAEKYKNAGAEQ-GKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANG-LREFR--- 352 (408)
Q Consensus 281 ~~~p~~~i~is~---~~~~~a~~~l~~~g~~~-~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~-L~~~~--- 352 (408)
+.+++++. +|...+.+.|+.+|+.. +.-|+=||+.+.-. +.....++=++. |.+..
T Consensus 227 ----TIRVSLT~dP~~EV~va~~IL~slglr~~g~~iiSCPtCGR~~------------~dl~~~~~~ve~~l~~~~~~l 290 (346)
T TIGR00612 227 ----TIRVSLTDDPTHEVPVAFEILQSLGLRARGVEIVACPSCGRTG------------FDVEKVVRRVQEALFHLKTPL 290 (346)
T ss_pred ----eEEEECCCCcHHHHHHHHHHHHHcCCCcCCCeEEECCCCCCcC------------CCHHHHHHHHHHHHhcCCCCC
Confidence 34555543 44556778899999874 46677789887643 666666544444 33322
Q ss_pred CEEEe----CCcchHHHH
Q 015347 353 PLFVI----PHEKEREGV 366 (408)
Q Consensus 353 ~vvli----ggp~E~e~~ 366 (408)
.|-+. -||+|...+
T Consensus 291 ~VAVMGCvVNGPGEak~A 308 (346)
T TIGR00612 291 KVAVMGCVVNGPGEAKHA 308 (346)
T ss_pred EEEEECceecCCchhhcc
Confidence 34444 478887655
No 138
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=27.86 E-value=94 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=23.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEE
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDV 157 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~Idv 157 (408)
+|||+++.+|+|=. .-+...|++.|++..|..
T Consensus 1 ~~ilivC~~G~~tS---~~l~~~i~~~~~~~~i~~ 32 (89)
T cd05566 1 KKILVACGTGVATS---TVVASKVKELLKENGIDV 32 (89)
T ss_pred CEEEEECCCCccHH---HHHHHHHHHHHHHCCCce
Confidence 58999999999964 345677888877655543
No 139
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=27.55 E-value=3.5e+02 Score=31.76 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=52.6
Q ss_pred cCCccEEEEEcCCC--hhHHH----HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHH
Q 015347 119 RGDVRRCCCIISGG--VYENL----LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYT 192 (408)
Q Consensus 119 ~~~~~rILIIr~~~--IGDvI----LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~ 192 (408)
|.+.+||||+-.+. ||... ..+-++++||+. +.++.++-... ..+.......|.++.-+ . . .-
T Consensus 4 ~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~--G~~vi~v~~np-~~~~~d~~~ad~~y~ep-~----~---~e 72 (1068)
T PRK12815 4 DTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE--GYQVVLVNPNP-ATIMTDPAPADTVYFEP-L----T---VE 72 (1068)
T ss_pred CCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc--CCEEEEEeCCc-chhhcCcccCCeeEECC-C----C---HH
Confidence 67889999999986 45322 667899999987 77776665333 23333333555554322 1 1 12
Q ss_pred HHHHHhhcCCCcEEEEcCC
Q 015347 193 DILGVMKNRYYDMVLSTKL 211 (408)
Q Consensus 193 ~l~~~LR~~~YDlvIdl~~ 211 (408)
.+...+++++.|.++-+-+
T Consensus 73 ~l~~ii~~e~~D~Iip~~g 91 (1068)
T PRK12815 73 FVKRIIAREKPDALLATLG 91 (1068)
T ss_pred HHHHHHHHhCcCEEEECCC
Confidence 3455578899999997543
No 140
>cd08478 PBP2_CrgA The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene wh
Probab=27.38 E-value=1.2e+02 Score=26.07 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
+..+++..++++||+++|++........+. .-.+|=++..
T Consensus 17 ~l~~~l~~f~~~~P~v~i~~~~~~~~~~l~--~~~~D~~i~~ 56 (199)
T cd08478 17 LLAPLIAKFRERYPDIELELVSNEGIIDLI--ERKTDVAIRI 56 (199)
T ss_pred HHHHHHHHHHHHCCCeEEEEEeccccccch--hccccEEEEe
Confidence 355899999999999999998654444433 2477766654
No 141
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=27.18 E-value=1.1e+02 Score=28.00 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=35.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhh
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle 168 (408)
+||++..++++|=. .+.-+++.|++. +++|.+++++.++.++.
T Consensus 1 k~I~lgvtGs~~a~-~~~~ll~~L~~~--g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGSIAAY-KAADLTSQLTKL--GYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCHHHHH-HHHHHHHHHHHC--CCEEEEEEChHHHhhcc
Confidence 58999999998755 556889999875 78999999998887765
No 142
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=26.89 E-value=2.8e+02 Score=28.75 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=53.9
Q ss_pred cCCc-cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhh--------hcCCCCcEEEEecCCCCCCChH
Q 015347 119 RGDV-RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTF--------ELNKNVRWANVYDLDDDWPEPA 189 (408)
Q Consensus 119 ~~~~-~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~ll--------e~~P~Vd~Vi~~d~k~~~~~~~ 189 (408)
+.++ +.|||++..-.-=.-.+-=+++.|-+.|| .|+|.+....+... |.+..+++|..+-..
T Consensus 90 ~~~p~~~~lv~K~~d~s~~~~~~Elv~~ll~~~~--~i~V~v~~~~~~~~~f~~~~~~e~~~~~~~i~y~~~e------- 160 (409)
T KOG2178|consen 90 WLKPPKNLLVTKKNDESVLEKFVELVEWLLQTFP--NITVYVEDKVAKDKQFSAGNLDESFGVKERILYWTTE------- 160 (409)
T ss_pred ccCCCceEEEEcCCcHHHHHHHHHHHHHHHhhCC--CeEEEechhhhhhhhhcccchhhcccchhceEeeccc-------
Confidence 4444 45555555522222233356788889999 57777765554422 233555555544321
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCCChHHHHHHHHhC-CCeEEEec
Q 015347 190 EYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTT-ARDRVSYI 232 (408)
Q Consensus 190 ~~~~l~~~LR~~~YDlvIdl~~~~~~sall~~lag-a~~RIG~~ 232 (408)
...-...+||++|.+.+.|.-......+-+ .|--+.|.
T Consensus 161 -----~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFs 199 (409)
T KOG2178|consen 161 -----GCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFS 199 (409)
T ss_pred -----cccccccceeEEEEecCCccEEEehhhhcCCCCCeEEee
Confidence 112224789999999887553222222222 46567775
No 143
>cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold. AlsR is responsible for activating the expression of the acetoin operon (alsSD) in response to inducing signals such as glucose and acetate. Like many other LysR family proteins, AlsR is transcribed divergently from the alsSD operon. The alsS gene encodes acetolactate synthase, an enzyme involved in the production of acetoin in cells of stationary-phase. AlsS catalyzes the conversion of two pyruvate molecules to acetolactate and carbon dioxide. Acetolactate is then converted to acetoin at low pH by acetolactate decarboxylase which encoded by the alsD gene. Acetoin is an important physiological metabolite excreted by many microorganisms grown on glucose or other fermentable carbon sources. This substrate-binding domain shows significant homology to the type 2 perip
Probab=26.46 E-value=1e+02 Score=26.68 Aligned_cols=28 Identities=11% Similarity=0.362 Sum_probs=21.9
Q ss_pred ChhHHHHHHHHHHHHHHHCCCcEEEEEEC
Q 015347 132 GVYENLLFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 132 ~IGDvILttPvI~aLK~~yP~A~IdvLv~ 160 (408)
.++..+ ..++++.++++||+++|++...
T Consensus 9 ~~~~~~-l~~~l~~~~~~~P~v~i~i~~~ 36 (197)
T cd08452 9 AAIYEF-LPPIVREYRKKFPSVKVELREL 36 (197)
T ss_pred HHHHhH-HHHHHHHHHHHCCCcEEEEEec
Confidence 344433 4699999999999999999763
No 144
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=26.05 E-value=1.2e+02 Score=27.48 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=47.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHh---hhcCCCCcEEEEecCCCCCCChH-HHHHHHHHh
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQT---FELNKNVRWANVYDLDDDWPEPA-EYTDILGVM 198 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~l---le~~P~Vd~Vi~~d~k~~~~~~~-~~~~l~~~L 198 (408)
|||+++.++.- -.+..++.+|++.-.+++|..++....+.. ......+-.. .++... +..-. .--.+...|
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l 75 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQ-VADEKN-FQPRSENDEELLELL 75 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEE-EHHGGG-SSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEE-eccccC-CCchHhhhhHHHHHH
Confidence 68988855443 334566889998877778888874433332 1122333222 222221 11111 123477888
Q ss_pred hcCCCcEEEEcCC
Q 015347 199 KNRYYDMVLSTKL 211 (408)
Q Consensus 199 R~~~YDlvIdl~~ 211 (408)
++.++|++|....
T Consensus 76 ~~~~~Dl~v~~~~ 88 (181)
T PF00551_consen 76 ESLNPDLIVVAGY 88 (181)
T ss_dssp HHTT-SEEEESS-
T ss_pred Hhhccceeehhhh
Confidence 9999999998753
No 145
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.69 E-value=3e+02 Score=26.68 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=53.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEE-CCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcC
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIA-SARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNR 201 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv-~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~ 201 (408)
|||||+ ++=|| ...+.+.|.++ +.++...+ .....+.+...+.+. |+. +. + . -..+...|+++
T Consensus 1 m~ILvl--GGT~e---gr~la~~L~~~--g~~v~~s~~t~~~~~~~~~~g~~~-v~~-g~---l-~---~~~l~~~l~~~ 64 (256)
T TIGR00715 1 MTVLLM--GGTVD---SRAIAKGLIAQ--GIEILVTVTTSEGKHLYPIHQALT-VHT-GA---L-D---PQELREFLKRH 64 (256)
T ss_pred CeEEEE--echHH---HHHHHHHHHhC--CCeEEEEEccCCccccccccCCce-EEE-CC---C-C---HHHHHHHHHhc
Confidence 567765 55556 66777788765 45666655 555666777665443 432 21 1 1 12356677889
Q ss_pred CCcEEEEcCCC-----ChHHHHHHHHhCCCeEEEec
Q 015347 202 YYDMVLSTKLA-----GLGHAAFLFMTTARDRVSYI 232 (408)
Q Consensus 202 ~YDlvIdl~~~-----~~~sall~~laga~~RIG~~ 232 (408)
+.|++||..-- +....-.+.-.|+++ +-|.
T Consensus 65 ~i~~VIDAtHPfA~~is~~a~~a~~~~~ipy-lR~e 99 (256)
T TIGR00715 65 SIDILVDATHPFAAQITTNATAVCKELGIPY-VRFE 99 (256)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcE-EEEE
Confidence 99999997432 012233345566663 3344
No 146
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=25.69 E-value=8.1e+02 Score=25.99 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=66.2
Q ss_pred CccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHh------hhcCCCCcEEE-EecCCCCCCChHH---
Q 015347 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQT------FELNKNVRWAN-VYDLDDDWPEPAE--- 190 (408)
Q Consensus 121 ~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~l------le~~P~Vd~Vi-~~d~k~~~~~~~~--- 190 (408)
...|++|+-..+.|=.+|..=+++.+.++++++.|-.++.++..++ +......++.+ ++...+. .-..+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~-~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNE-PPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCC-CHHHHHHH
Confidence 3689999999999999999999999998888988888888888875 22233444444 3333222 21111
Q ss_pred ---HHHHHHHhhcC-CCcEEEEcCCCChHHHHH
Q 015347 191 ---YTDILGVMKNR-YYDMVLSTKLAGLGHAAF 219 (408)
Q Consensus 191 ---~~~l~~~LR~~-~YDlvIdl~~~~~~sall 219 (408)
-..+..-+|.+ .+|+.+.+..- +|.|-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl-TR~A~A 252 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI-FRFVQA 252 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc-hHHHHH
Confidence 13345557877 89999988666 444433
No 147
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=25.58 E-value=3.6e+02 Score=27.90 Aligned_cols=41 Identities=24% Similarity=0.475 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC--CEEEe
Q 015347 308 EQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR--PLFVI 357 (408)
Q Consensus 308 ~~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~--~vvli 357 (408)
.++..|++|+=+-.++ +-....|.|.+|++.+.+++ +++=+
T Consensus 170 ~~~~vvLLH~CcHNPT---------G~D~t~~qW~~l~~~~~~r~lip~~D~ 212 (396)
T COG1448 170 PEGSVVLLHGCCHNPT---------GIDPTEEQWQELADLIKERGLIPFFDI 212 (396)
T ss_pred CCCCEEEEecCCCCCC---------CCCCCHHHHHHHHHHHHHcCCeeeeeh
Confidence 4567899997766654 45689999999999999887 55533
No 148
>cd08450 PBP2_HcaR The C-terminal substrate binding domain of LysR-type transcriptional regulator HcaR in involved in 3-phenylpropionic acid catabolism, contains the type2 periplasmic binding fold. HcaR, a member of the LysR family of transcriptional regulators, controls the expression of the hcA1, A2, B, C, and D operon, encoding for the 3-phenylpropionate dioxygenase complex and 3-phenylpropionate-2',3'-dihydrodiol dehydrogenase, that oxidizes 3-phenylpropionate to 3-(2,3-dihydroxyphenyl) propionate. Dioxygenases play an important role in protecting the cell against the toxic effects of dioxygen. The expression of hcaR is negatively auto-regulated, as for other members of the LysR family, and is strongly repressed in the presence of glucose. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, an
Probab=25.51 E-value=1.1e+02 Score=26.09 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEEC
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~ 160 (408)
.+..++++.++++||+++|.+...
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~~ 36 (196)
T cd08450 13 QWLPEVLPILREEHPDLDVELSSL 36 (196)
T ss_pred hhHHHHHHHHHhhCCCcEEEEEec
Confidence 456799999999999999999864
No 149
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=25.45 E-value=43 Score=26.04 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHCCCcEEE
Q 015347 139 FFPAIQLLKDRYPGVLID 156 (408)
Q Consensus 139 ttPvI~aLK~~yP~A~Id 156 (408)
.-=++++|+++||+++|+
T Consensus 53 ~~r~~~~Le~~~p~a~it 70 (71)
T cd04910 53 IKRLTEDLENRFPNAEIT 70 (71)
T ss_pred HHHHHHHHHHhCccCccc
Confidence 345789999999999985
No 150
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.44 E-value=1.8e+02 Score=34.17 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=52.1
Q ss_pred cCCccEEEEEcCCC--hhHHH----HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHH
Q 015347 119 RGDVRRCCCIISGG--VYENL----LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYT 192 (408)
Q Consensus 119 ~~~~~rILIIr~~~--IGDvI----LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~ 192 (408)
+.+.+||||+-.+. ||... -.+.++++||+. |.++.++-... ..+.......|+++..+.. .-
T Consensus 4 ~~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~--G~~vi~v~~~p-~~~~~~~~~aD~~y~~p~~--------~e 72 (1066)
T PRK05294 4 RTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREE--GYRVVLVNSNP-ATIMTDPEMADATYIEPIT--------PE 72 (1066)
T ss_pred CCCCCEEEEECCchhhhcccccccchHHHHHHHHHHc--CCEEEEEcCCc-ccccCCcccCCEEEECCCC--------HH
Confidence 56789999999987 56321 345789999986 77766664322 2233333356666554321 12
Q ss_pred HHHHHhhcCCCcEEEEcCC
Q 015347 193 DILGVMKNRYYDMVLSTKL 211 (408)
Q Consensus 193 ~l~~~LR~~~YDlvIdl~~ 211 (408)
.+.+.+++++.|.++-.-+
T Consensus 73 ~l~~ii~~e~~D~Iip~~g 91 (1066)
T PRK05294 73 FVEKIIEKERPDAILPTMG 91 (1066)
T ss_pred HHHHHHHHHCcCEEEECCC
Confidence 3455678899999997643
No 151
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.09 E-value=82 Score=24.48 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=23.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEE
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIA 159 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv 159 (408)
|||++|.+|+|-..| +...|++.+|+..|...+
T Consensus 1 kilvvC~~G~~tS~l---l~~kl~~~f~~~~i~~~~ 33 (86)
T cd05563 1 KILAVCGSGLGSSLM---LKMNVEKVLKELGIEAEV 33 (86)
T ss_pred CEEEECCCCccHHHH---HHHHHHHHHHHCCCcEEE
Confidence 589999999996444 456788888766654433
No 152
>PRK10086 DNA-binding transcriptional regulator DsdC; Provisional
Probab=24.82 E-value=2.4e+02 Score=27.26 Aligned_cols=47 Identities=13% Similarity=0.323 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec
Q 015347 131 GGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (408)
Q Consensus 131 ~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d 180 (408)
..++. -+..+++..++++||+.+|++.+......+. +..+|=++...
T Consensus 110 ~~~~~-~~l~~~l~~f~~~~P~i~i~~~~~~~~~~l~--~~~~Di~i~~~ 156 (311)
T PRK10086 110 PSIAQ-CWLVPRLADFTRRYPSISLTILTGNENVNFQ--RAGIDLAIYFD 156 (311)
T ss_pred chHHH-HHHHHHHHHHHHHCCCeEEEEEeCCcccCCc--cCCccEEEEeC
Confidence 34433 5667889999999999999999865544332 34777666654
No 153
>cd08474 PBP2_CrgA_like_5 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene a
Probab=24.75 E-value=1.4e+02 Score=25.58 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
+..++++.++++||+++|.+........+.+ ..+|=.+.+
T Consensus 17 ~l~~~l~~~~~~~P~v~i~~~~~~~~~~l~~--g~~D~~i~~ 56 (202)
T cd08474 17 LLAPLLARFLARYPDIRLELVVDDGLVDIVA--EGFDAGIRL 56 (202)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCcccccc--cCccEEEEc
Confidence 4458999999999999999987544333332 367765654
No 154
>PRK14997 LysR family transcriptional regulator; Provisional
Probab=24.59 E-value=2.2e+02 Score=27.14 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=38.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
.|=|-....++..++ .+++..++++||+.+|++........++. ..+|=++..
T Consensus 93 ~lrIg~~~~~~~~~l-~~~l~~~~~~~P~i~i~~~~~~~~~~~~~--~~~Dl~i~~ 145 (301)
T PRK14997 93 IVKLTCPVTLLHVHI-GPMLAKFMARYPDVSLQLEATNRRVDVVG--EGVDVAIRV 145 (301)
T ss_pred eEEEECcHHHHHHHH-HHHHHHHHHHCCCeEEEEEecCCcccccc--ccccEEEEe
Confidence 344444556777665 68999999999999999987665555543 357866654
No 155
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=24.28 E-value=5.2e+02 Score=25.30 Aligned_cols=38 Identities=8% Similarity=-0.121 Sum_probs=23.3
Q ss_pred cEEEEEcCCCh----hHH-HHHHHHHHHHHHHCCCcEEEEEECCCc
Q 015347 123 RRCCCIISGGV----YEN-LLFFPAIQLLKDRYPGVLIDVIASARG 163 (408)
Q Consensus 123 ~rILIIr~~~I----GDv-ILttPvI~aLK~~yP~A~IdvLv~~~~ 163 (408)
||||+|....- |-+ ....=+.++|++++ .+++++....
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~~---~v~v~~~~~~ 43 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARLM---DVDVRCFGDQ 43 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHhc---CeeEEcCCCc
Confidence 68888865332 222 45557788888774 6666665443
No 156
>cd08440 PBP2_LTTR_like_4 TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse funct
Probab=23.65 E-value=1.5e+02 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCChhHHHHHHHHHHHHHHHCCCcEEEEEEC
Q 015347 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 130 ~~~IGDvILttPvI~aLK~~yP~A~IdvLv~ 160 (408)
...++..+ ..++++.++++||+++|++...
T Consensus 7 ~~~~~~~~-l~~~l~~~~~~~p~v~i~i~~~ 36 (197)
T cd08440 7 LPSLAATL-LPPVLAAFRRRHPGIRVRLRDV 36 (197)
T ss_pred ccchhhhH-HHHHHHHHHHhCCCcEEEEEeC
Confidence 34444444 4799999999999999999864
No 157
>cd08484 PBP2_LTTR_beta_lactamase The C-terminal substrate-domain of LysR-type transcriptional regulators for beta-lactamase genes, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators, BlaA and AmpR, that are involved in control of the expression of beta-lactamase genes. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. BlaA (a constitutive class A penicillinase) belongs to the LysR family of transcriptional regulators, while BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin-binding protein, but it does not act as a beta-lactamase. AmpR regulates the expression of beta-lactamases in many enterobacterial strains and many other gram-negative bacilli. In contrast to BlaA, AmpR acts an activator only in the presence of the beta-lactam inducer. In the absence of the inducer, AmpR acts as a repressor. The topol
Probab=23.37 E-value=1.3e+02 Score=25.63 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d 180 (408)
+..+++..++++||+.+|.+........++++ .+|=.+...
T Consensus 14 ~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~~--~~D~~i~~~ 54 (189)
T cd08484 14 WLLPRLAEFRQLHPFIDLRLSTNNNRVDIAAE--GLDFAIRFG 54 (189)
T ss_pred HHHhhhHHHHHHCCCceEEEecccCccccccC--CccEEEEec
Confidence 34578999999999999999875544444443 477666543
No 158
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=23.35 E-value=5.2e+02 Score=25.27 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCCCchhhccCCCC--CCCCCCHHHHHHHHHHHhhCC--CEEEeCCcchHHHHHHHHhcC-CCcccc--CC
Q 015347 309 QGKYIVIHGIESDSKASMQSRGD--TDSLLPIQVWAEIANGLREFR--PLFVIPHEKEREGVEDVVGDD-ASIVFI--TT 381 (408)
Q Consensus 309 ~~~~Ivihpgas~~~~~~~~~g~--~~K~WP~e~waeLa~~L~~~~--~vvliggp~E~e~~~~I~~~~-~~~~~i--~~ 381 (408)
....|+||.--++-. ..... ..-.=+.++|.+-++.+.++. +++++.| +|.+.+++..... ....+. .+
T Consensus 162 ~~~~V~VHIRRGDy~---~~~~~~~~~~~~~~~Yy~~Ai~~i~~~~~~~~f~ifS-DD~~w~k~~l~~~~~~~~~~~~~~ 237 (298)
T PF01531_consen 162 NSNSVCVHIRRGDYV---SNGNHNWKHGICDKDYYKKAIEYIREKVKNPKFFIFS-DDIEWCKENLKFSNGDVYFSGNNS 237 (298)
T ss_pred CCCeEEEEEEchhcc---ccccccccCCCCCHHHHHHHHHHHHHhCCCCEEEEEc-CCHHHHHHHHhhcCCcEEEECCCC
Confidence 456899996544432 11000 112347899999999998765 4555444 4556665544322 211111 23
Q ss_pred H-HHHHHhcccCEEEeCCChHHHHhc
Q 015347 382 P-GQLQIQQPYNLQTRVKSPALHCSA 406 (408)
Q Consensus 382 ~-~eLaAi~~adl~I~nDSGpmHLAa 406 (408)
+ .+|..|++|+.+|..-|---.-||
T Consensus 238 ~~~Dl~lms~C~~~IisnSTFswW~a 263 (298)
T PF01531_consen 238 PYEDLYLMSQCKHFIISNSTFSWWAA 263 (298)
T ss_pred HHHHHHHHHhCCcEEECCChHHHHHH
Confidence 3 566669999998887776554443
No 159
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.34 E-value=2.8e+02 Score=26.74 Aligned_cols=26 Identities=4% Similarity=0.013 Sum_probs=17.4
Q ss_pred CCHHHHHH-hcc----cCEEEeCCChHHHHh
Q 015347 380 TTPGQLQI-QQP----YNLQTRVKSPALHCS 405 (408)
Q Consensus 380 ~~~~eLaA-i~~----adl~I~nDSGpmHLA 405 (408)
+++.++.. +.. -++-|+-|+|-+|.+
T Consensus 154 ~~~~el~~ll~~~~~~~~lg~~lDt~H~~~~ 184 (274)
T TIGR00587 154 RSFEELAYIIKVIVDKRRIGVCLDTCHFFAA 184 (274)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEEhhhHHhc
Confidence 45555555 432 458899999988875
No 160
>cd05466 PBP2_LTTR_substrate The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA bin
Probab=23.22 E-value=2.7e+02 Score=22.91 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhc--CCCCcEEEEec
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL--NKNVRWANVYD 180 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~--~P~Vd~Vi~~d 180 (408)
.+..++++.++++||+++|.+..... ..+++. ...+|=++.+.
T Consensus 13 ~~l~~~i~~~~~~~p~i~i~~~~~~~-~~~~~~l~~g~~D~~i~~~ 57 (197)
T cd05466 13 YLLPPLLAAFRQRYPGVELSLVEGGS-SELLEALLEGELDLAIVAL 57 (197)
T ss_pred HHhHHHHHHHHHHCCCCEEEEEECCh-HHHHHHHHcCCceEEEEcC
Confidence 35678899999999999999987543 222222 23466555443
No 161
>cd08441 PBP2_MetR The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mecha
Probab=23.22 E-value=93 Score=26.69 Aligned_cols=23 Identities=22% Similarity=0.670 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCcEEEEEEC
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~ 160 (408)
+..++++.++++||+++|.+...
T Consensus 14 ~~~~~l~~~~~~~P~i~i~i~~~ 36 (198)
T cd08441 14 WLMPVLDQFRERWPDVELDLSSG 36 (198)
T ss_pred hhHHHHHHHHHhCCCeEEEEEeC
Confidence 45689999999999999999864
No 162
>cd08434 PBP2_GltC_like The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity,
Probab=23.03 E-value=1.4e+02 Score=25.14 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=23.7
Q ss_pred CCChhHHHHHHHHHHHHHHHCCCcEEEEEECC
Q 015347 130 SGGVYENLLFFPAIQLLKDRYPGVLIDVIASA 161 (408)
Q Consensus 130 ~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~ 161 (408)
...++. .+..++++.++++||+++|++....
T Consensus 7 ~~~~~~-~~l~~~l~~~~~~~P~i~i~i~~~~ 37 (195)
T cd08434 7 LHSLGT-SLVPDLIRAFRKEYPNVTFELHQGS 37 (195)
T ss_pred cchhhh-hhhHHHHHHHHHhCCCeEEEEecCc
Confidence 344554 3467899999999999999998743
No 163
>cd08416 PBP2_MdcR The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold. This family includes the C-terminal substrate binding domain of LysR-type transcriptional regulator (LTTR) MdcR that controls the expression of the malonate decarboxylase (mdc) genes. Like other members of the LTTRs, MdcR is a positive regulatory protein for its target promoter and composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins (PBP2). The PBP2 are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these dom
Probab=23.00 E-value=3e+02 Score=23.26 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEEECCCchHhhh--cCCCCcEEEEec
Q 015347 138 LFFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVYD 180 (408)
Q Consensus 138 LttPvI~aLK~~yP~A~IdvLv~~~~~~lle--~~P~Vd~Vi~~d 180 (408)
+..+++..++++||+++|.+..... ..+++ ..-.+|=++.+.
T Consensus 14 ~l~~~l~~~~~~~P~i~l~i~~~~~-~~~~~~l~~~~~Dl~i~~~ 57 (199)
T cd08416 14 TVPRIIMGLKLRRPELDIELTLGSN-KDLLKKLKDGELDAILVAT 57 (199)
T ss_pred hhHHHHHHHHHhCCCeEEEEEEcCc-HHHHHHHhCCCCCEEEEec
Confidence 4678999999999999999987543 22222 234566566543
No 164
>cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repre
Probab=22.95 E-value=1.4e+02 Score=25.44 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=31.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhc--CCCCcEEEEe
Q 015347 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL--NKNVRWANVY 179 (408)
Q Consensus 129 r~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~--~P~Vd~Vi~~ 179 (408)
....++.. +..+++..++++||+++|.+..... ..+++. ...||=++.+
T Consensus 7 ~~~~~~~~-~l~~~l~~~~~~~P~i~i~i~~~~~-~~~~~~l~~~~~Dl~i~~ 57 (200)
T cd08411 7 VIPTIAPY-LLPRLLPALRQAYPKLRLYLREDQT-ERLLEKLRSGELDAALLA 57 (200)
T ss_pred ecHHHHhh-hhHHHHHHHHHHCCCcEEEEEeCcH-HHHHHHHHcCCccEEEEe
Confidence 34455554 6778999999999999999987432 222221 2356655544
No 165
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=22.93 E-value=4.9e+02 Score=26.10 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=12.7
Q ss_pred HHHHH-hcccCEEEeC
Q 015347 383 GQLQI-QQPYNLQTRV 397 (408)
Q Consensus 383 ~eLaA-i~~adl~I~n 397 (408)
.++.. ++.||++|..
T Consensus 268 ~~l~~~~~~aDv~v~p 283 (380)
T PRK15484 268 EKMHNYYPLADLVVVP 283 (380)
T ss_pred HHHHHHHHhCCEEEeC
Confidence 67888 9999999864
No 166
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=22.65 E-value=2.7e+02 Score=24.83 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHhhCC--CEEEeCCcc
Q 015347 333 DSLLPIQVWAEIANGLREFR--PLFVIPHEK 361 (408)
Q Consensus 333 ~K~WP~e~waeLa~~L~~~~--~vvliggp~ 361 (408)
+|.+.-+.|++.++.+...+ -+|+|||+.
T Consensus 75 Gk~~sS~~fA~~l~~~~~~g~~i~FvIGGa~ 105 (153)
T TIGR00246 75 GKPWTTPQLADTLEKWKTDGRDVTLLIGGPE 105 (153)
T ss_pred CCcCCHHHHHHHHHHHhccCCeEEEEEcCCC
Confidence 47799999999999886554 467889985
No 167
>cd08480 PBP2_CrgA_like_10 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 10. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene
Probab=22.64 E-value=1.6e+02 Score=25.30 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
-+..|+++.+++.||+.+|++........+. ...+|=.+..
T Consensus 14 ~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~--~~~~D~~i~~ 54 (198)
T cd08480 14 HFLLPLLPAFLARYPEILVDLSLTDEVVDLL--AERTDVAIRV 54 (198)
T ss_pred HhhHHHHHHHHHHCCCeEEEEEecCCccccc--cccccEEEEe
Confidence 3457999999999999999998644443333 3466655554
No 168
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.49 E-value=6.3e+02 Score=23.44 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=56.5
Q ss_pred EEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCch--HhhhcCCCCcEEEEecCCCCCCCh------HHHHHHHH
Q 015347 125 CCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGK--QTFELNKNVRWANVYDLDDDWPEP------AEYTDILG 196 (408)
Q Consensus 125 ILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~--~lle~~P~Vd~Vi~~d~k~~~~~~------~~~~~l~~ 196 (408)
++.+.....-+.. -+++.+|+. +++..+...+.+. .+-+..+.||.|......-++.+- .+..+-++
T Consensus 83 ~i~~H~E~~~~~~---~~i~~ik~~--g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~ 157 (201)
T PF00834_consen 83 YITFHAEATEDPK---ETIKYIKEA--GIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELR 157 (201)
T ss_dssp EEEEEGGGTTTHH---HHHHHHHHT--TSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHH
T ss_pred EEEEcccchhCHH---HHHHHHHHh--CCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHH
Confidence 4455555443333 467888887 8999999988775 233456899999887765544321 22233444
Q ss_pred HhhcC---CCcEEEEcCCCChHHHHHHHHhCCCeEEE
Q 015347 197 VMKNR---YYDMVLSTKLAGLGHAAFLFMTTARDRVS 230 (408)
Q Consensus 197 ~LR~~---~YDlvIdl~~~~~~sall~~laga~~RIG 230 (408)
+++.+ ++++.+|-.-+ ....-.+.-+|+..-|.
T Consensus 158 ~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~ 193 (201)
T PF00834_consen 158 KLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVA 193 (201)
T ss_dssp HHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEE
T ss_pred HHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 44443 56667775444 44455555678775553
No 169
>PLN02735 carbamoyl-phosphate synthase
Probab=22.19 E-value=3.5e+02 Score=31.95 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=52.1
Q ss_pred cCCccEEEEEcCCC--hhHH----HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHH
Q 015347 119 RGDVRRCCCIISGG--VYEN----LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYT 192 (408)
Q Consensus 119 ~~~~~rILIIr~~~--IGDv----ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~ 192 (408)
|.+.+||||+-.+. ||-. .-.+.++++||+. +.++..+-.. -..+.......|+++..+. . . -
T Consensus 20 ~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~--G~~Vi~vd~n-p~t~~~~~~~aD~~yi~p~-~----~---e 88 (1102)
T PLN02735 20 RTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEE--GYEVVLINSN-PATIMTDPETADRTYIAPM-T----P---E 88 (1102)
T ss_pred ccCCCEEEEECCCccccccceeecchHHHHHHHHHHc--CCEEEEEeCC-cccccCChhhCcEEEeCCC-C----H---H
Confidence 56789999999987 5522 4467899999988 6676555422 2223333345677654332 1 1 1
Q ss_pred HHHHHhhcCCCcEEEEcCC
Q 015347 193 DILGVMKNRYYDMVLSTKL 211 (408)
Q Consensus 193 ~l~~~LR~~~YDlvIdl~~ 211 (408)
.+...+++++.|.++-+-+
T Consensus 89 ~v~~ii~~e~~D~Iip~~g 107 (1102)
T PLN02735 89 LVEQVIAKERPDALLPTMG 107 (1102)
T ss_pred HHHHHHHHhCCCEEEECCC
Confidence 2445578899999997643
No 170
>cd08463 PBP2_DntR_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=22.11 E-value=1.9e+02 Score=25.37 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHHHHHHCCCcEEEEEE
Q 015347 132 GVYENLLFFPAIQLLKDRYPGVLIDVIA 159 (408)
Q Consensus 132 ~IGDvILttPvI~aLK~~yP~A~IdvLv 159 (408)
.++. .+..+++..++++||+++|++..
T Consensus 9 ~~~~-~~~~~~l~~~~~~~P~~~v~~~~ 35 (203)
T cd08463 9 YLNA-LFLPELVARFRREAPGARLEIHP 35 (203)
T ss_pred hhHH-HHhHHHHHHHHHHCCCCEEEEEe
Confidence 4444 45678999999999999999986
No 171
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=22.06 E-value=40 Score=35.05 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=49.6
Q ss_pred cccccccccCCccEEEEEcCCChhHHHHHHH-------------HHHHHHHHCCCcEEEEEECCCchHhhhc
Q 015347 111 IASLPLKIRGDVRRCCCIISGGVYENLLFFP-------------AIQLLKDRYPGVLIDVIASARGKQTFEL 169 (408)
Q Consensus 111 ~~~~~~~~~~~~~rILIIr~~~IGDvILttP-------------vI~aLK~~yP~A~IdvLv~~~~~~lle~ 169 (408)
|..|....+...-|+.|....|+|.+=|+|| +++-||++||++++..+...-++-++-+
T Consensus 143 Vr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~n 214 (409)
T KOG1838|consen 143 VRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTN 214 (409)
T ss_pred HHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHH
Confidence 4445555566779999999999999999998 7899999999999999998888877744
No 172
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=22.06 E-value=1.2e+02 Score=30.36 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=57.0
Q ss_pred cCCCCCcccccccccccCCccEEEEEcCCChhHHHHHH--HHHHHHHHHCCCcEEEE----------------EECCCch
Q 015347 103 FPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFF--PAIQLLKDRYPGVLIDV----------------IASARGK 164 (408)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~rILIIr~~~IGDvILtt--PvI~aLK~~yP~A~Idv----------------Lv~~~~~ 164 (408)
+-+-++-+.|.++.-. +-+-||- .+||.|..+.= =.|...|+.||+.-+-| +....-.
T Consensus 45 ~~~~it~~~a~~~~p~-~RPVRVY---ADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERy 120 (348)
T KOG2804|consen 45 YSKKITTEMARLGLPT-DRPVRVY---ADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERY 120 (348)
T ss_pred HHHHhhhhhhhcCCCC-CCceEEE---ccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHH
Confidence 4455566666554432 2233433 59999998875 55777889999965432 2233344
Q ss_pred HhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCCCcEEE
Q 015347 165 QTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVL 207 (408)
Q Consensus 165 ~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~YDlvI 207 (408)
.-+.+|.+||+|+. ..-|.- ..--|.+.+.|.|-
T Consensus 121 E~lrHCryVDEVi~---~APW~l------t~EFL~~HKIDfVA 154 (348)
T KOG2804|consen 121 EALRHCRYVDEVIP---NAPWTL------TPEFLEKHKIDFVA 154 (348)
T ss_pred HHhhhhhhhhhhcc---CCCccc------cHHHHHhcccceee
Confidence 67889999999985 333431 11234567888876
No 173
>cd08456 PBP2_LysR The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold. LysR, the transcriptional activator of lysA encoding diaminopimelate decarboxylase, catalyses the decarboxylation of diaminopimelate to produce lysine. The LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational
Probab=22.02 E-value=1.7e+02 Score=24.80 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhh--cCCCCcEEEEe
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVY 179 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle--~~P~Vd~Vi~~ 179 (408)
.+..++++.++++||+++|.+..... ..+++ ..-.+|=++.+
T Consensus 13 ~~l~~~l~~~~~~~P~i~~~i~~~~~-~~~~~~l~~g~~Dl~i~~ 56 (196)
T cd08456 13 SFLPRAIKAFLQRHPDVTISIHTRDS-PTVEQWLSAQQCDLGLVS 56 (196)
T ss_pred hhHHHHHHHHHHHCCCcEEEEEeCCH-HHHHHHHHcCCccEEEEe
Confidence 34679999999999999999987542 23322 23466655554
No 174
>PRK14098 glycogen synthase; Provisional
Probab=21.80 E-value=5.7e+02 Score=26.96 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhCC-CEEEeCCcch--HHHHHHHHhcCCC-ccccC--CHHHHHH-hcccCEEEeC
Q 015347 338 IQVWAEIANGLREFR-PLFVIPHEKE--REGVEDVVGDDAS-IVFIT--TPGQLQI-QQPYNLQTRV 397 (408)
Q Consensus 338 ~e~waeLa~~L~~~~-~vvliggp~E--~e~~~~I~~~~~~-~~~i~--~~~eLaA-i~~adl~I~n 397 (408)
.+...+.+..|.+.. +++++|+.++ ++.++++....++ +.+.. +..++.. ++.||++|.+
T Consensus 322 ~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~P 388 (489)
T PRK14098 322 AELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMP 388 (489)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeC
Confidence 456667777776555 6777775432 3555665554432 22211 2234555 8888888754
No 175
>PRK10632 transcriptional regulator; Provisional
Probab=21.73 E-value=2.9e+02 Score=26.66 Aligned_cols=54 Identities=7% Similarity=0.078 Sum_probs=36.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec
Q 015347 124 RCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD 180 (408)
Q Consensus 124 rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d 180 (408)
+|-|-....++. -+..+++..+.+.||+++|++........+.+ ..+|=.+.+.
T Consensus 93 ~l~I~~~~~~~~-~~l~~~l~~~~~~~P~i~i~l~~~~~~~~l~~--~~~Dl~i~~~ 146 (309)
T PRK10632 93 TLRIGCSSTMAQ-NVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIA--DGLDVVIRVG 146 (309)
T ss_pred EEEEeccHHHHH-HHHHHHHHHHHHHCCCeEEEEEecCcccCccc--CCeeEEEEec
Confidence 444444445554 45568999999999999999987654444444 3577666543
No 176
>cd08425 PBP2_CynR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold. CynR is a LysR-like transcriptional regulator of the cyn operon, which encodes genes that allow cyanate to be used as a sole source of nitrogen. The operon includes three genes in the following order: cynT (cyanate permease), cynS (cyanase), and cynX (a protein of unknown function). CynR negatively regulates its own expression independently of cyanate. CynR binds to DNA and induces bending of DNA in the presence or absence of cyanate, but the amount of bending is decreased by cyanate. The CynR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding
Probab=21.64 E-value=3.1e+02 Score=23.19 Aligned_cols=42 Identities=17% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhh--cCCCCcEEEEe
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVY 179 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle--~~P~Vd~Vi~~ 179 (408)
.+..++++.++++||+++|.+..... ..+.+ .+..+|=++.+
T Consensus 14 ~~l~~~l~~~~~~~P~v~i~i~~~~~-~~~~~~l~~g~~Dl~i~~ 57 (197)
T cd08425 14 YLIGPLIDRFHARYPGIALSLREMPQ-ERIEAALADDRLDLGIAF 57 (197)
T ss_pred hhhHHHHHHHHHHCCCcEEEEEECcH-HHHHHHHHcCCccEEEEe
Confidence 34579999999999999999987432 23322 23456655543
No 177
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.47 E-value=6.3e+02 Score=24.48 Aligned_cols=88 Identities=7% Similarity=-0.042 Sum_probs=52.6
Q ss_pred HHHHHHCCCcEEEEEECCC-c---hHhhhc--CCCCcEEEEecCCC--CCCChHHHHHHHHHhhcCCCcEEEEcCCC---
Q 015347 144 QLLKDRYPGVLIDVIASAR-G---KQTFEL--NKNVRWANVYDLDD--DWPEPAEYTDILGVMKNRYYDMVLSTKLA--- 212 (408)
Q Consensus 144 ~aLK~~yP~A~IdvLv~~~-~---~~lle~--~P~Vd~Vi~~d~k~--~~~~~~~~~~l~~~LR~~~YDlvIdl~~~--- 212 (408)
-.||+++.+.+|++++-.. . ...++. --..|+.+-+..+. +...+.--.-|...+++..||+++.-..+
T Consensus 46 lrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~ 125 (256)
T PRK03359 46 CQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDL 125 (256)
T ss_pred HHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccC
Confidence 3577888778999997332 2 134442 24788877664331 11111222345556777789999964322
Q ss_pred --ChHHHHHHHHhCCCeEEEec
Q 015347 213 --GLGHAAFLFMTTARDRVSYI 232 (408)
Q Consensus 213 --~~~sall~~laga~~RIG~~ 232 (408)
+.-...++.+.|.+. ++|.
T Consensus 126 ~tgqvg~~lAe~Lg~P~-vt~v 146 (256)
T PRK03359 126 YAQQVGLLVGEILNIPA-INGV 146 (256)
T ss_pred CCCcHHHHHHHHhCCCc-eeeE
Confidence 246688888889884 4554
No 178
>cd08431 PBP2_HupR The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, p
Probab=21.42 E-value=1.1e+02 Score=26.28 Aligned_cols=28 Identities=11% Similarity=0.053 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHHHHHCCCcEEEEEEC
Q 015347 132 GVYENLLFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 132 ~IGDvILttPvI~aLK~~yP~A~IdvLv~ 160 (408)
.++..+ ..++++.++++||+++|++...
T Consensus 9 ~~~~~~-l~~~l~~~~~~~P~v~i~i~~~ 36 (195)
T cd08431 9 VLPLQP-LYPLIAEFYQLNKATRIRLSEE 36 (195)
T ss_pred ccChHH-HHHHHHHHHHHCCCCceEEEEe
Confidence 334433 5699999999999999999764
No 179
>cd08485 PBP2_ClcR The C-terminal substrate binding domain of LysR-type transcriptional regulator ClcR involved in the chlorocatechol catabolism, contains type 2 periplasmic binding fold. In soil bacterium Pseudomonas putida, the ortho-pathways of catechol and 3-chlorocatechol are central catabolic pathways that convert aromatic and chloroaromaric compounds to tricarboxylic acid (TCA) cycle intermediates. The 3-chlorocatechol-degradative pathway is encoded by clcABD operon, which requires the divergently transcribed clcR and an intermediate of the pathway, 2-chloromuconate, as an inducer for activation. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding th
Probab=21.36 E-value=1.8e+02 Score=25.20 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=23.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHCCCcEEEEEEC
Q 015347 129 ISGGVYENLLFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 129 r~~~IGDvILttPvI~aLK~~yP~A~IdvLv~ 160 (408)
....+++.+ ..++++.+++.||+++|++...
T Consensus 7 ~~~~~~~~~-l~~~l~~~~~~~P~i~l~~~~~ 37 (198)
T cd08485 7 YFGTVVLHT-LPLLLRQLLSVAPSATVSLTQM 37 (198)
T ss_pred EeccchhHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 344555544 5689999999999999999864
No 180
>cd08461 PBP2_DntR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytra
Probab=21.35 E-value=1.6e+02 Score=25.04 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhh--cCCCCcEEEEec
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVYD 180 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle--~~P~Vd~Vi~~d 180 (408)
.+..+++..++++||+++|++.+.... .+.+ .+..+|=++.+.
T Consensus 13 ~~l~~~l~~f~~~~P~v~i~i~~~~~~-~~~~~l~~~~~Di~i~~~ 57 (198)
T cd08461 13 AILPPLLAALRQEAPGVRVAIRDLESD-NLEAQLERGEVDLALTTP 57 (198)
T ss_pred HHhHHHHHHHHHHCCCcEEEEeeCCcc-cHHHHHhcCCCcEEEecC
Confidence 456799999999999999999874321 2221 234666555543
No 181
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=21.33 E-value=2e+02 Score=26.81 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=37.9
Q ss_pred CccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhh
Q 015347 121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFE 168 (408)
Q Consensus 121 ~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle 168 (408)
..+||++-.++++|=.--+.-+++.|++. +++|++++++.+..++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~--G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE--GAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC--cCEEEEEECHhHHHHhh
Confidence 36899999999999666577889999887 79999999988876543
No 182
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=21.23 E-value=1.6e+02 Score=24.68 Aligned_cols=87 Identities=11% Similarity=-0.041 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEec---CCCCCCChHHHHHHHHHhhcCCCcEEEEcCCC-Ch
Q 015347 139 FFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYD---LDDDWPEPAEYTDILGVMKNRYYDMVLSTKLA-GL 214 (408)
Q Consensus 139 ttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d---~k~~~~~~~~~~~l~~~LR~~~YDlvIdl~~~-~~ 214 (408)
+.=++++|+++ |.++++++.....+.... .+....... .......+.....+.+.+++.++|++ ..+.. ..
T Consensus 18 ~~~l~~~l~~~--G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiV-h~~~~~~~ 92 (177)
T PF13439_consen 18 VLNLARALAKR--GHEVTVVSPGVKDPIEEE--LVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIV-HIHGPPAF 92 (177)
T ss_dssp HHHHHHHHHHT--T-EEEEEESS-TTS-SST--EEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEE-ECCTTHCC
T ss_pred HHHHHHHHHHC--CCEEEEEEcCCCccchhh--ccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeE-Eecccchh
Confidence 33567888885 779999987766665555 111111110 01111123345667778888999988 44433 12
Q ss_pred HHHHHHHHhCCCeEEEe
Q 015347 215 GHAAFLFMTTARDRVSY 231 (408)
Q Consensus 215 ~sall~~laga~~RIG~ 231 (408)
..+.+... +.+.-..+
T Consensus 93 ~~~~~~~~-~~~~v~~~ 108 (177)
T PF13439_consen 93 WIALLACR-KVPIVYTI 108 (177)
T ss_dssp CHHHHHHH-CSCEEEEE
T ss_pred HHHHHhcc-CCCEEEEe
Confidence 23333333 55554444
No 183
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=21.17 E-value=1.7e+02 Score=29.55 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=42.6
Q ss_pred ccEEEEEcCCChh-HHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCC-CCcEEEEecCCCCCCChHHHHHHHHHhh
Q 015347 122 VRRCCCIISGGVY-ENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNK-NVRWANVYDLDDDWPEPAEYTDILGVMK 199 (408)
Q Consensus 122 ~~rILIIr~~~IG-DvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P-~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR 199 (408)
..+.+++..+.-| +++.=.-+++.|++.+++.+|++.|. ..| .|..|.. .+...++..|+
T Consensus 184 ~~~~v~~v~DNaG~Elv~D~ll~~~L~~~~~~~~V~~~vK--------~~P~~vnDvT~----------~D~~~~l~~l~ 245 (355)
T PF01937_consen 184 KAKRVDIVLDNAGFELVFDLLLAEFLLESGPGSKVVFHVK--------GIPWFVNDVTM----------EDAEWLLERLA 245 (355)
T ss_dssp HTSEEEEE--BTTHHHHHHHHHHHHHHHTCTTSEEEEEEB--------SS--TTTB-BH----------HHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCcHHHhhHHHHHHHHHhCCCCeEEEEEC--------CCCCeeccCcH----------HHHHHHHHHHH
Confidence 3344445567889 99999999999999999999999985 467 7776643 23444666666
Q ss_pred cCC
Q 015347 200 NRY 202 (408)
Q Consensus 200 ~~~ 202 (408)
+..
T Consensus 246 ~~~ 248 (355)
T PF01937_consen 246 DSD 248 (355)
T ss_dssp -TT
T ss_pred hcc
Confidence 543
No 184
>cd08483 PBP2_HvrB The C-terminal substrate-binding domain of LysR-type transcriptional regulator HvrB, an activator of S-adenosyl-L-homocysteine hydrolase expression, contains the type 2 periplasmic binding fold. The transcriptional regulator HvrB of the LysR family is required for the light-dependent activation of both ahcY, which encoding the enzyme S-adenosyl-L-homocysteine hydrolase (AdoHcyase) that responsible for the reversible hydrolysis of AdoHcy to adenosine and homocysteine, and orf5, a gene of unknown. The topology of this C-terminal domain of HvrB is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transp
Probab=21.12 E-value=2.7e+02 Score=23.47 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEe
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVY 179 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~ 179 (408)
-+..++++.++++||+.+|++........+ ....+|=.+..
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~~~~~~~~~~l--~~g~~Dl~i~~ 53 (190)
T cd08483 13 NWLMPRLGSFWAKHPEIELSLLPSADLVDL--RPDGIDVAIRY 53 (190)
T ss_pred hhHHhhHHHHHHHCCCceEEEEecCCcCCC--CCCCcCEEEEe
Confidence 345688999999999999999753322221 12366655554
No 185
>cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functi
Probab=21.03 E-value=2.1e+02 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHHHHHHHCCCcEEEEEEC
Q 015347 131 GGVYENLLFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 131 ~~IGDvILttPvI~aLK~~yP~A~IdvLv~ 160 (408)
..++..+ ..++++.++++||+++|.+...
T Consensus 8 ~~~~~~~-l~~~l~~~~~~~P~v~i~i~~~ 36 (194)
T cd08436 8 TSLAAVD-LPELLARFHRRHPGVDIRLRQA 36 (194)
T ss_pred hHHHHHH-HHHHHHHHHHHCCCcEEEEecC
Confidence 3455444 5789999999999999999874
No 186
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=21.02 E-value=4.7e+02 Score=21.46 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCC-CcEEEEecCCCCCCChHHHHHHHHHhhcCCCcEEEEcCCC
Q 015347 135 ENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKN-VRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLA 212 (408)
Q Consensus 135 DvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~-Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~YDlvIdl~~~ 212 (408)
|-=-..++++.|.+. -+.+++.+.++..++.+-. +..|..+........ ..+...++++.+|+||++...
T Consensus 11 dk~~~~~~a~~l~~~----G~~i~aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~----~~i~~~i~~~~idlVIn~~~~ 81 (116)
T cd01423 11 SKPELLPTAQKLSKL----GYKLYATEGTADFLLENGIPVTPVAWPSEEPQNDK----PSLRELLAEGKIDLVINLPSN 81 (116)
T ss_pred cchhHHHHHHHHHHC----CCEEEEccHHHHHHHHcCCCceEeeeccCCCCCCc----hhHHHHHHcCCceEEEECCCC
Confidence 444455777777776 4667889999998885443 333432221111011 345667778999999997543
No 187
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.91 E-value=56 Score=33.44 Aligned_cols=22 Identities=5% Similarity=0.003 Sum_probs=18.7
Q ss_pred HHHHH-hcccCEEEeCCChHHHHhcC
Q 015347 383 GQLQI-QQPYNLQTRVKSPALHCSAL 407 (408)
Q Consensus 383 ~eLaA-i~~adl~I~nDSGpmHLAaa 407 (408)
+.++. +.+||++|+| |+|+|.|
T Consensus 254 ~rm~~~Vp~AdvVItN---PTH~AVA 276 (363)
T COG1377 254 RRMMSDVPKADVVITN---PTHYAVA 276 (363)
T ss_pred HHHHhhCCCCCEEeeC---cCceeee
Confidence 45677 9999999999 8899976
No 188
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.85 E-value=3.3e+02 Score=22.80 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=39.5
Q ss_pred ccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEE
Q 015347 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWAN 177 (408)
Q Consensus 122 ~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi 177 (408)
.++||++|.+|+---+|.+=+=++.+.+.-++.|+-+....... ...++|-|+
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~---~~~~~DvvL 53 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSE---YIDNADVVL 53 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHH---hhhcCCEEE
Confidence 47999999999999999999999999887777776665443333 333666444
No 189
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold. This CD includes the C-terminal of LysR-type transcription regulators, BenM, CatM, and CatR, which are involved in the benzoate catabolism. The BenM and CatM are paralogs with overlapping functions. BenM responds synergistically to two effectors, benzoate and cis,cis-muconate, to activate expression of the benABCDE operon which is involved in benzoate catabolism, while CatM responses only to muconate. BenM and CatM share high protein sequence identity and bind to the operator-promoter regions that have similar DNA sequences. In Pseudomonas species, phenolic compounds are converted by different enzymes to central intermediates, such as protocatechuate and catechols. Generally, unsubstituted compounds, such as benzoate, are metabolized by an ortho-cleavage pathway. The catBCA operon encodes three enzymes
Probab=20.71 E-value=1.7e+02 Score=25.33 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEEC
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIAS 160 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~ 160 (408)
-+..++++.++++||+.+|++...
T Consensus 14 ~~l~~~l~~~~~~~P~i~l~i~~~ 37 (203)
T cd08445 14 GLLPELIRRFRQAAPDVEIELIEM 37 (203)
T ss_pred hHHHHHHHHHHHHCCCeEEEEEeC
Confidence 456799999999999999999864
No 190
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.64 E-value=8.6e+02 Score=24.85 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCcEEEEEECCCchHhhhcCC-------CCcEEEEecCCCCCCChHHHHH----HHHHhhc-CCCcEEEE
Q 015347 141 PAIQLLKDRYPGVLIDVIASARGKQTFELNK-------NVRWANVYDLDDDWPEPAEYTD----ILGVMKN-RYYDMVLS 208 (408)
Q Consensus 141 PvI~aLK~~yP~A~IdvLv~~~~~~lle~~P-------~Vd~Vi~~d~k~~~~~~~~~~~----l~~~LR~-~~YDlvId 208 (408)
|++.++++.-|+ +|-+++++.+...++... ....+...|.. .+.+.++ .+..++. ...+++||
T Consensus 2 Pi~~sI~~~~Pd-~V~f~~S~~s~~~~~~i~~~l~~~~~~~~~~~~d~d----D~~~~y~~l~~~l~~~~~~~~~~v~vD 76 (379)
T PF09670_consen 2 PIVLSIRELRPD-RVVFFCSEESKPKAEQIRQQLGLSPDQEEIVIVDPD----DPLECYRKLREVLEKLRDFPGHEVAVD 76 (379)
T ss_pred hHHHHHHHcCCC-EEEEEecccchhhHHHHHHHHhcccCCceEeeCCCC----CHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 889999999997 888999887776554432 11222222222 3333333 3333322 35789999
Q ss_pred cCCC
Q 015347 209 TKLA 212 (408)
Q Consensus 209 l~~~ 212 (408)
.++.
T Consensus 77 iTGG 80 (379)
T PF09670_consen 77 ITGG 80 (379)
T ss_pred CCCC
Confidence 9888
No 191
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.61 E-value=3.7e+02 Score=22.28 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=47.4
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCc---hHhhhcCC---CCcEEEEecCCCCCCChHHHHHHHH
Q 015347 124 RCCCII-SGGVYENLLFFPAIQLLKDRYPGVLIDVIASARG---KQTFELNK---NVRWANVYDLDDDWPEPAEYTDILG 196 (408)
Q Consensus 124 rILIIr-~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~---~~lle~~P---~Vd~Vi~~d~k~~~~~~~~~~~l~~ 196 (408)
||.||- ++.+|=.+ ++.|.+ +|..++..++.... +.+-+..| .+..+..-+.. . .
T Consensus 1 rV~IvGAtG~vG~~l-----~~lL~~-hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~-------~ 62 (121)
T PF01118_consen 1 RVAIVGATGYVGREL-----LRLLAE-HPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDAD-----P-------E 62 (121)
T ss_dssp EEEEESTTSHHHHHH-----HHHHHH-TSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETS-----G-------H
T ss_pred CEEEECCCCHHHHHH-----HHHHhc-CCCccEEEeeeeccccCCeeehhccccccccceeEeecc-----h-------h
Confidence 688888 67777665 577777 99999999885555 34444444 33333332211 0 1
Q ss_pred HhhcCCCcEEEEcCCCChHHHHHHHH
Q 015347 197 VMKNRYYDMVLSTKLAGLGHAAFLFM 222 (408)
Q Consensus 197 ~LR~~~YDlvIdl~~~~~~sall~~l 222 (408)
.+ .+.|+++.....+....+...+
T Consensus 63 ~~--~~~Dvvf~a~~~~~~~~~~~~~ 86 (121)
T PF01118_consen 63 EL--SDVDVVFLALPHGASKELAPKL 86 (121)
T ss_dssp HH--TTESEEEE-SCHHHHHHHHHHH
T ss_pred Hh--hcCCEEEecCchhHHHHHHHHH
Confidence 22 6799999887764444444433
No 192
>PRK06298 type III secretion system protein; Validated
Probab=20.59 E-value=48 Score=33.86 Aligned_cols=22 Identities=0% Similarity=-0.191 Sum_probs=18.3
Q ss_pred HHHHH-hcccCEEEeCCChHHHHhcC
Q 015347 383 GQLQI-QQPYNLQTRVKSPALHCSAL 407 (408)
Q Consensus 383 ~eLaA-i~~adl~I~nDSGpmHLAaa 407 (408)
+.+.+ +.+||++|+| |+|+|.|
T Consensus 248 ~~m~~~V~~AdVVItN---PTH~AVA 270 (356)
T PRK06298 248 EDTSSQVKHASAVVSN---PKDIAVA 270 (356)
T ss_pred hHHhhcCCCCcEEEEC---CCceEEE
Confidence 34566 9999999999 7899976
No 193
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=20.58 E-value=5.7e+02 Score=25.36 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECC
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASA 161 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~ 161 (408)
..+.-+.++|+++ +.+|+++|..
T Consensus 24 ~~v~~la~~L~~~--G~~V~v~~~~ 46 (405)
T TIGR03449 24 VYILETATELARR--GIEVDIFTRA 46 (405)
T ss_pred ehHHHHHHHHhhC--CCEEEEEecc
Confidence 4555677888875 6699999964
No 194
>cd08458 PBP2_NocR The C-terminal substrate-domain of LysR-type transcriptional regulator, NocR, involved in the catabolism of nopaline, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulator NocR, which is involved in the catabolism of nopaline. Opines are low molecular weight compounds found in plant crown gall tumors produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, an
Probab=20.52 E-value=2e+02 Score=24.74 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCchHhhhc--CCCCcEEEEe
Q 015347 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFEL--NKNVRWANVY 179 (408)
Q Consensus 137 ILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~--~P~Vd~Vi~~ 179 (408)
-+..++++.++++||+++|++.... ...+.+. ...+|=.+.+
T Consensus 13 ~~l~~~l~~f~~~~P~v~i~~~~~~-~~~~~~~l~~g~~Dl~i~~ 56 (196)
T cd08458 13 SFMSGVIQTFIADRPDVSVYLDTVP-SQTVLELVSLQHYDLGISI 56 (196)
T ss_pred hhhHHHHHHHHHHCCCcEEEEeccC-hHHHHHHHHcCCCCEEEEe
Confidence 3557899999999999999998653 3333332 3566655543
No 195
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=20.50 E-value=3.8e+02 Score=20.20 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=23.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEE
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLI 155 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~I 155 (408)
+||||++..|+|=. .=+...|++.||+..+
T Consensus 1 ~kilivC~~G~~~s---~~l~~~l~~~~~~~~~ 30 (85)
T cd05568 1 KKALVVCPSGIGTS---RLLKSKLKKLFPEIEI 30 (85)
T ss_pred CeEEEECCCCHHHH---HHHHHHHHHHCCCceE
Confidence 47999999999964 3457889999987555
No 196
>PF13028 DUF3889: Protein of unknown function (DUF3889)
Probab=20.37 E-value=85 Score=26.00 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.0
Q ss_pred HHHHHHHHCCCcEEEEEE
Q 015347 142 AIQLLKDRYPGVLIDVIA 159 (408)
Q Consensus 142 vI~aLK~~yP~A~IdvLv 159 (408)
+++.+|++||+|+|.---
T Consensus 30 A~~~~k~~Yp~a~v~DY~ 47 (97)
T PF13028_consen 30 AVQETKEKYPGAEVVDYL 47 (97)
T ss_pred HHHHHHHHCCCCEEeeee
Confidence 678999999999986543
No 197
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=20.32 E-value=7.5e+02 Score=25.93 Aligned_cols=97 Identities=8% Similarity=0.071 Sum_probs=59.5
Q ss_pred cCCccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCC-chHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHH
Q 015347 119 RGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASAR-GKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGV 197 (408)
Q Consensus 119 ~~~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~-~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~ 197 (408)
.+...+||++-. --....|..|.++.|+++.++-.... ...+.+...+ ..|+.|..=. ....-.++
T Consensus 279 ~r~~~~~l~~t~------s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~----~~~l~~ly-- 345 (438)
T TIGR02919 279 NKYRKQALILTN------SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNIT----TQKIQELY-- 345 (438)
T ss_pred cCCcccEEEECC------HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHhc-CCcEEECCcC----hHHHHHHH--
Confidence 345678888873 44567899999999999999955444 3444343333 5666665211 11111222
Q ss_pred hhcCCCcEEEEcCCC-ChHHHHHHHH-hCCCeEEEec
Q 015347 198 MKNRYYDMVLSTKLA-GLGHAAFLFM-TTARDRVSYI 232 (408)
Q Consensus 198 LR~~~YDlvIdl~~~-~~~sall~~l-aga~~RIG~~ 232 (408)
+++|+.+|.... +...++.-.+ .|.+ -+||.
T Consensus 346 ---~~~dlyLdin~~e~~~~al~eA~~~G~p-I~afd 378 (438)
T TIGR02919 346 ---QTCDIYLDINHGNEILNAVRRAFEYNLL-ILGFE 378 (438)
T ss_pred ---HhccEEEEccccccHHHHHHHHHHcCCc-EEEEe
Confidence 579999998543 4555665444 5555 68887
No 198
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=20.29 E-value=99 Score=31.23 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=29.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEE
Q 015347 123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIA 159 (408)
Q Consensus 123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv 159 (408)
.+.=-+-..+=||++-++=++++||+.||+..|.+=.
T Consensus 208 vNFDttgaaGd~Df~atL~AvE~Lr~~fP~m~IE~GM 244 (466)
T PF09505_consen 208 VNFDTTGAAGDGDFYATLKAVEALRKKFPNMYIEMGM 244 (466)
T ss_pred ccccccccCCChhHHHHHHHHHHHHHhCcceeEeccc
Confidence 3333445567899999999999999999999998644
No 199
>cd08430 PBP2_IlvY The C-terminal substrate binding of LysR-type transcriptional regulator IlvY, which activates the expression of ilvC gene that encoding acetohydroxy acid isomeroreductase for the biosynthesis of branched amino acids; contains the type 2 periplasmic binding fold. In Escherichia coli, IlvY is required for the regulation of ilvC gene expression that encodes acetohydroxy acid isomeroreductase (AHIR), a key enzyme in the biosynthesis of branched-chain amino acids (isoleucine, valine, and leucine). The ilvGMEDA operon genes encode remaining enzyme activities required for the biosynthesis of these amino acids. Activation of ilvC transcription by IlvY requires the additional binding of a co-inducer molecule (either alpha-acetolactate or alpha-acetohydoxybutyrate, the substrates for AHIR) to a preformed complex of IlvY protein-DNA. Like many other LysR-family members, IlvY negatively auto-regulates the transcription of its own divergently transcribed ilvY gene in an inducer-i
Probab=20.01 E-value=1.8e+02 Score=24.62 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCcEEEEEECCCchHhhh--cCCCCcEEEEe
Q 015347 139 FFPAIQLLKDRYPGVLIDVIASARGKQTFE--LNKNVRWANVY 179 (408)
Q Consensus 139 ttPvI~aLK~~yP~A~IdvLv~~~~~~lle--~~P~Vd~Vi~~ 179 (408)
..+++..++++||+++|.+.... ...+++ .+..+|=++.+
T Consensus 15 l~~~l~~~~~~~P~v~l~~~~~~-~~~~~~~l~~g~~Dl~i~~ 56 (199)
T cd08430 15 LPPILERFRAQHPQVEIKLHTGD-PADAIDKVLNGEADIAIAA 56 (199)
T ss_pred ccHHHHHHHHHCCCceEEEEeCC-HHHHHHHHHCCCCCEEEEe
Confidence 36889999999999999998753 333333 24567766655
No 200
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=20.01 E-value=8.4e+02 Score=24.46 Aligned_cols=67 Identities=9% Similarity=0.134 Sum_probs=37.0
Q ss_pred HHHHH-HHHCCCcEEEEEECCCc---hHhh----hcCCCCcEEEEecCC-CCCCChHHHHHHHHHhhcCCCcEEEEcC
Q 015347 142 AIQLL-KDRYPGVLIDVIASARG---KQTF----ELNKNVRWANVYDLD-DDWPEPAEYTDILGVMKNRYYDMVLSTK 210 (408)
Q Consensus 142 vI~aL-K~~yP~A~IdvLv~~~~---~~ll----e~~P~Vd~Vi~~d~k-~~~~~~~~~~~l~~~LR~~~YDlvIdl~ 210 (408)
.|+++ ++.||+.+|-++.+... .+++ +..|+++-.+..+.. .++. .+...+.+.+++-++|+++-+.
T Consensus 59 ~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~--~K~~~l~~~~~~a~ge~i~~~D 134 (373)
T TIGR03472 59 NLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPN--RKVSNLINMLPHARHDILVIAD 134 (373)
T ss_pred HHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCC--hHHHHHHHHHHhccCCEEEEEC
Confidence 34444 67799999988764433 3443 445765421223322 2221 1234455556778899998654
Done!