Query 015348
Match_columns 408
No_of_seqs 433 out of 1272
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 11:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1E-34 3.5E-39 272.0 19.9 334 6-366 53-412 (451)
2 3o7q_A L-fucose-proton symport 100.0 3.1E-33 1.1E-37 261.0 26.1 326 5-365 50-409 (438)
3 4aps_A DI-OR tripeptide H+ sym 100.0 9.3E-31 3.2E-35 247.9 18.8 342 4-363 37-448 (491)
4 2gfp_A EMRD, multidrug resista 100.0 1.4E-32 4.9E-37 251.2 2.9 326 7-365 26-354 (375)
5 4gc0_A D-xylose-proton symport 100.0 1.2E-28 4.2E-33 233.3 22.9 368 14-402 53-470 (491)
6 2cfq_A Lactose permease; trans 100.0 4.4E-30 1.5E-34 237.8 1.6 335 3-365 30-377 (417)
7 2xut_A Proton/peptide symporte 99.9 1.3E-25 4.4E-30 214.3 14.1 341 3-363 35-467 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 2E-12 6.8E-17 120.5 9.9 154 3-172 275-433 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.3 4E-12 1.4E-16 119.9 11.0 153 203-366 14-175 (491)
10 3o7q_A L-fucose-proton symport 99.3 3.4E-12 1.2E-16 118.4 9.2 126 228-361 51-177 (438)
11 2gfp_A EMRD, multidrug resista 99.3 2.2E-12 7.6E-17 117.2 6.4 126 229-365 26-152 (375)
12 2xut_A Proton/peptide symporte 99.2 1.1E-11 3.8E-16 117.8 8.7 154 202-365 12-176 (524)
13 2cfq_A Lactose permease; trans 99.2 1.6E-11 5.5E-16 113.2 7.6 156 5-178 245-406 (417)
14 4gc0_A D-xylose-proton symport 99.0 2.2E-09 7.5E-14 101.1 10.6 163 236-398 53-223 (491)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1e-34 Score=272.00 Aligned_cols=334 Identities=13% Similarity=0.075 Sum_probs=260.9
Q ss_pred hhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHH----hccCcchHHHH
Q 015348 6 FLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAI----LSQSSISIFTM 80 (408)
Q Consensus 6 ~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 80 (408)
++.+++ .|+.+.|++.+...++..+ ++++|+++|| +|||++++.+.++.+++.+++++ .+ +++.+
T Consensus 53 ~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~l 122 (451)
T 1pw4_A 53 YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-----SNPRVFLPAGLILAAAVMLFMGFVPWATS----SIAVM 122 (451)
T ss_dssp HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHCHHHHS----SSSHH
T ss_pred HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-----cCchHHHHHHHHHHHHHHHHHHhhhhccc----cHHHH
Confidence 345678 9999999999999988777 9999999999 99999999999999999999999 88 89999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhhHHHHHH
Q 015348 81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFS-PPSMFLFFG 159 (408)
Q Consensus 81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-~~~~f~i~~ 159 (408)
++.|++.|++.+...+...+++.|+.|+++ |++++++.+...++|.+++|.+++.+.+..| ||+.|++.+
T Consensus 123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~ 193 (451)
T 1pw4_A 123 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 193 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHCCchh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999998753 9999999999999999999999999889898 999999999
Q ss_pred HHHHHHHHHh-hhcccccccCCCCCc----ch-------h--HHHHHHH--HHHhcccchhHHHHHHHHhhhcccccccc
Q 015348 160 LLVVLQFFIT-IAVRESALKLPKSQS----NV-------G--IRAQLSE--LSAALRKPEIMYSVAWFAASYSIIPVLTG 223 (408)
Q Consensus 160 ~~~~~~~~~~-~~~~e~~~~~~~~~~----~~-------~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (408)
++.++..+.. +++||++++....++ ++ + .+...++ .++.+++|.++...+..++..........
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 194 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp HHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765544 457776543211100 00 0 0111111 34568889888887777765555555566
Q ss_pred eeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC--CCceehHHHHHHHHHHHHHhHhhhcccccccCcCce
Q 015348 224 TMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSV--SPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDS 301 (408)
Q Consensus 224 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
..+.|..+.+|+++.+.+.......++.+++.++.+++.||+ ++|+.+..+..+.....+.... ......
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 345 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--------MNPAGN 345 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT--------SCCTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH--------HhcccC
Confidence 677777777899999999999999999999999999999999 8888777666555422222111 111112
Q ss_pred EeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC
Q 015348 302 LYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVAL-AFIVSGYLGVALASYTGV 366 (408)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~ig~~~~g~l~~~~g~ 366 (408)
.+.........+++.....+. ..+..|..|+++||+++|+.+...++ |..++|.+.|.+.|..|+
T Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 223334444455554444454 78999999999999999999999999 999999999999998764
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.1e-33 Score=261.00 Aligned_cols=326 Identities=10% Similarity=0.032 Sum_probs=257.2
Q ss_pred hhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHH---HHhccCcchHHHH
Q 015348 5 FFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAI---AILSQSSISIFTM 80 (408)
Q Consensus 5 ~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 80 (408)
.++++++|.|+.+.|++.+...++..+ ++++|+++|| +|||+.++.+.++.+++.+++ .+.+ +++.+
T Consensus 50 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-----~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~~l 120 (438)
T 3o7q_A 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-----LSYKAGIITGLFLYALGAALFWPAAEIM----NYTLF 120 (438)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHhccccc----cHHHH
Confidence 356789999999999999999988776 9999999999 999999999999999999998 7777 99999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh-hcCC---------
Q 015348 81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAI-DRFS--------- 150 (408)
Q Consensus 81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~-~~~g--------- 150 (408)
++.|++.|++.+...+..++++.|+.|+++ |++.+++.+...++|.+++|.+++.+. +..+
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 191 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGPESS---------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDK 191 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcCchh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999999999999999999999999999764 999999999999999999999999998 5555
Q ss_pred ----------------hhhHHHHHHHHHHHHHHHhhh--cccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHH
Q 015348 151 ----------------PPSMFLFFGLLVVLQFFITIA--VRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFA 212 (408)
Q Consensus 151 ----------------~~~~f~i~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
||+.|++.+...++..+..++ .||+++++++++++++.+ ++.++.+|+|.++...+..+
T Consensus 192 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 268 (438)
T 3o7q_A 192 MSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFS---ASLSRLARIRHWRWAVLAQF 268 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHH---HHHHHHTTCSHHHHHHHHHH
T ss_pred CCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchh---hhHHHHHhChHHHHHHHHHH
Confidence 999998887777666555444 344433322222222333 33445589999988887776
Q ss_pred hhhcccccccceeEEE-EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcc
Q 015348 213 ASYSIIPVLTGTMFFY-QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKG 291 (408)
Q Consensus 213 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (408)
+..........+.+.| ..+.+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.++..+..+....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---- 344 (438)
T 3o7q_A 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---- 344 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----
Confidence 6555555555666677 66767999999999999999999999999999999999999888777666555443221
Q ss_pred cccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348 292 VYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG 365 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g 365 (408)
.++. .........+++.....|. .++..|..|++ +++..++.. ...++..++|.+.|.+.|..|
T Consensus 345 ------~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 345 ------AGGH--VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp ------CCHH--HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred ------cCCc--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 1111 1122234445555555666 77878888866 888888776 778999999999999999988
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=9.3e-31 Score=247.86 Aligned_cols=342 Identities=10% Similarity=0.041 Sum_probs=237.7
Q ss_pred hhhhhhc-----cCCCHHHHHHHHHhhcccccc-cchheeecccccccCC-cchhHHHHHHHHHHHHHHHHHHhccCcch
Q 015348 4 NFFLKDS-----LNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQ-HRVPYIAIGAFLQAVSWLAIAILSQSSIS 76 (408)
Q Consensus 4 ~~~l~~~-----l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~-grk~~l~~~~~~~~~~~~~~~~~~~~~~~ 76 (408)
..|++++ +|.|+.+.+++.+...++..+ ++++|+++|| + |||+.+..+.++..++.+++++++ +
T Consensus 37 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-----~~g~r~~~~~~~~~~~~~~~~~~~~~----~ 107 (491)
T 4aps_A 37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR-----IIGARPAVFWGGVLIMLGHIVLALPF----G 107 (491)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCC----S
T ss_pred HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccchHHHHHHHHHHHHHHHHHHHhh----h
Confidence 4456665 999999999999999987777 9999999999 6 999999999999999999999888 9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHH
Q 015348 77 IFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFL 156 (408)
Q Consensus 77 ~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~ 156 (408)
++.+++.|++.|++.+...+...+++.|+.|++++ .|++..+..+...++|..++|.+++.+.+..|||+.|+
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-------RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-------cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999998652 47888998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-ccccccC---CCCC-cchhHHHHHHH-------------------------------------
Q 015348 157 FFGLLVVLQFFITIAV-RESALKL---PKSQ-SNVGIRAQLSE------------------------------------- 194 (408)
Q Consensus 157 i~~~~~~~~~~~~~~~-~e~~~~~---~~~~-~~~~~~~~~~~------------------------------------- 194 (408)
+.++..++..+...+. ++..+++ ++++ ++++.++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAI 260 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHH
Confidence 9887776665554432 2221111 1111 11111111100
Q ss_pred -----------HHH--hccc--chhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015348 195 -----------LSA--ALRK--PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYN 259 (408)
Q Consensus 195 -----------~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 259 (408)
... ..++ ...+...+..++.+..........+.|..+..+.+....+.......++.+++..+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (491)
T 4aps_A 261 PVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFA 340 (491)
T ss_dssp HHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHH
Confidence 000 0111 1122233233332333333444445555555676666777777888888888999999
Q ss_pred HhhccCCCceehH-----HHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCc
Q 015348 260 SGLKSVSPRKLIS-----AIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPG 333 (408)
Q Consensus 260 ~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~ 333 (408)
++.||+++|+... .+..+.++............. ...+...+......+..+++.....|. ..+..|..|++
T Consensus 341 ~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 418 (491)
T 4aps_A 341 WLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG--TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA 418 (491)
T ss_dssp HHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC--CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 9999999886554 444443333322111000000 001122234445556666766665666 88999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348 334 CEGSIMAFVMSAVALAFIVSGYLGVALASY 363 (408)
Q Consensus 334 ~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~ 363 (408)
.||++.|+.+...++|..+++.+.+.+.+.
T Consensus 419 ~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 419 FNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998887653
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=1.4e-32 Score=251.20 Aligned_cols=326 Identities=14% Similarity=0.085 Sum_probs=250.8
Q ss_pred hhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 015348 7 LKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTMSLFLL 85 (408)
Q Consensus 7 l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (408)
+.+++|.|+.+.+++.+...++..+ ++++|+++|| +|||+.+..+.....++.+++.+.+ +++.+++.|+
T Consensus 26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 96 (375)
T 2gfp_A 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-----VGRRPVILVGMSIFMLATLVAVTTS----SLTVLIAASA 96 (375)
T ss_dssp HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-----SCCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHHHHHHHHhc----cHHHHHHHHH
Confidence 5688999999999999999988777 9999999999 9999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q 015348 86 LSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFGLLVVLQ 165 (408)
Q Consensus 86 l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~~~~~~~ 165 (408)
+.|++.+...+..++++.|+.|+++ |++.++..+...++|..++|.+++.+.+..|||+.|++.++..++.
T Consensus 97 l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 97 MQGMGTGVGGVMARTLPRDLYERTQ---------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS---------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 9999999999999999999999999998889999999988887776
Q ss_pred HH-HhhhcccccccCCCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHH
Q 015348 166 FF-ITIAVRESALKLPKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISK 244 (408)
Q Consensus 166 ~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 244 (408)
.+ ..+++||++++++++++ .++ +.++.+|+|.++...+..++............+.|..+.+|.++.+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 241 (375)
T 2gfp_A 168 TFSMARWMPETRPVDAPRTR---LLT---SYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF 241 (375)
T ss_dssp HCCCCCSSCCCSTTTCCCCC---TTT---CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcccCCCCccccc---HHH---HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 65 34457776554332211 111 122346778877777766665555555566677777777899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-H
Q 015348 245 VFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-S 323 (408)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 323 (408)
....++.+++.++.+++.||.++ ....+................. .....+.........+++.....|. .
T Consensus 242 ~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~~~~~ 313 (375)
T 2gfp_A 242 ILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWF------GVMNVWTLLVPAALFFFGAGMLFPLAT 313 (375)
T ss_dssp HTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHH------HHHHHHHHHHHHHHHHHHHHHTSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh------ccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999876 2222222211111110000000 0011222333445555666555666 8
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348 324 VYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG 365 (408)
Q Consensus 324 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g 365 (408)
++..|..| ++||++.|+.+...++|..++|.+.|.+.+..+
T Consensus 314 ~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 314 SGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88999998 899999999999999999999999999887654
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.2e-28 Score=233.29 Aligned_cols=368 Identities=16% Similarity=0.079 Sum_probs=241.3
Q ss_pred CHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhcc--------------CcchHH
Q 015348 14 DPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQ--------------SSISIF 78 (408)
Q Consensus 14 s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 78 (408)
++.+.|++.+...++..+ ++++|+++|| +|||+.++++.++..++.+++++.+. ...+++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-----~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-----FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH
Confidence 346778888888888887 8999999999 99999999999999999999885221 012899
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------CC
Q 015348 79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDR--------FS 150 (408)
Q Consensus 79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~--------~g 150 (408)
.+++.|+++|++.|...+....++.|..|+++ |++..+..+.+...|.++++.++...... .+
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~---------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI---------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG---------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh---------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 99999999999999999999999999999864 99999999999999999998888776543 34
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccccccCCCCCcchhHH--------------------HHHHH------HHHhcccchh
Q 015348 151 PPSMFLFFGLLVVLQFFITIAVRESALKLPKSQSNVGIR--------------------AQLSE------LSAALRKPEI 204 (408)
Q Consensus 151 ~~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--------------------~~~~~------~~~~~~~~~~ 204 (408)
||..+.+..+..++..+..+++||+|+....++++++.+ +...+ .....+.+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (491)
T 4gc0_A 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVI 278 (491)
T ss_dssp HHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHH
T ss_pred hHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHH
Confidence 788888777777777777778999875321111110000 00000 0011222222
Q ss_pred HHHHHHHHhhhcccccccceeEEEEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHH
Q 015348 205 MYSVAWFAASYSIIPVLTGTMFFYQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMIS 284 (408)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
........+.............++..+..+.+...........++..+++.++.+++.||+|+|+.+..+.....+..+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence 22222222212211111111222233446667777777777888889999999999999999999888777666655433
Q ss_pred hHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348 285 DVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY 363 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~ 363 (408)
...... .....+..+....+..........|. +.+.+|..|.+.|+++.|+.+..+++++.+++.+.+.+.+.
T Consensus 359 l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 359 LGTAFY------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp HHHHHH------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred HHHHHh------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221110 01111111122222222333445566 78999999999999999999999999999999888776553
Q ss_pred cCCCCCCCCchHHHHHHHHhhhhhhhhhhhccCCCCCCc
Q 015348 364 TGVTGDDFSGLPLALIIQAVCTILPLYWSYFMPDGVKSK 402 (408)
Q Consensus 364 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (408)
...... ........+.++++.+..+..++++||++++.
T Consensus 433 ~~~~~~-~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 433 SWLVAH-FHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHhh-hhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 221110 01112223334444444445567889987654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=4.4e-30 Score=237.82 Aligned_cols=335 Identities=13% Similarity=0.104 Sum_probs=207.5
Q ss_pred hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHH---HHhccCcchH-
Q 015348 3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAI---AILSQSSISI- 77 (408)
Q Consensus 3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~- 77 (408)
++.|+++++|.|+.+.|++.+...+...+ +|++|+++|| +|||+.++.+..+..+..... .+.+ ..
T Consensus 30 ~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-----~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~~~ 100 (417)
T 2cfq_A 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-----LGLRKYLLWIITGMLVMFAPFFIFIFGP----LLQ 100 (417)
T ss_dssp HHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-----STTCCHHHHHHHHTTSCHHHHHHHTHHH----HHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 45678888999999999999999977777 9999999999 999999998877665422111 1211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 015348 78 FTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSMGGVLGNLLVGFAIDRFSPPSMFLF 157 (408)
Q Consensus 78 ~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i 157 (408)
......+.+.+++.+...+...+...++.++.+ + +++...+..+...++|..++|.+++++.+ .+||..|++
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~-----~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~ 172 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS--R-----RSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWL 172 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH--H-----HHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--h-----hcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHH
Confidence 112334444444444433333333444433321 1 35666666666778899999999999887 589999988
Q ss_pred HHHHHHHHHHHhhhccccccc-C--CCCCcchhHHHHHHHHHHhcccchhHHHHHHHHhhhcccccccceeEEEEEeccC
Q 015348 158 FGLLVVLQFFITIAVRESALK-L--PKSQSNVGIRAQLSELSAALRKPEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLK 234 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~e~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 234 (408)
.++..++..+..++.+|++++ . ++++++++.+...++.++.+++|.++...+..+...........+.+.|+.+.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (417)
T 2cfq_A 173 GSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA 252 (417)
T ss_dssp TTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777655544444444433211 1 0100000001112334556888888776655333222222222223333333333
Q ss_pred ---CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348 235 ---IRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL 311 (408)
Q Consensus 235 ---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
.+....+.......++.+++..+.+++.||+++|+.+..+....++..+.. ......+.+......
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l 321 (417)
T 2cfq_A 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS-----------SFATSALEVVILKTL 321 (417)
T ss_dssp SHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----------TTCCSHHHHHHHTTH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH-----------HHhccHHHHHHHHHH
Confidence 234556777888888889999999999999999998876665555443321 111111122222223
Q ss_pred HHHHHHhhhhH-HHHHHHhcCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 015348 312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAF-VMSAVALAFIVSGYLGVALASYTG 365 (408)
Q Consensus 312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~-~~~~~~lg~~ig~~~~g~l~~~~g 365 (408)
.+++.....+. ..+..|..|++.||+.++. ++...++|+.++|.++|.+.+..|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g 377 (417)
T 2cfq_A 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC
Confidence 33333333333 7789999999999999999 488889999999999999998755
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=1.3e-25 Score=214.34 Aligned_cols=341 Identities=15% Similarity=0.123 Sum_probs=210.0
Q ss_pred hhhhhhhccC------CCHHHHHHHHHhhcccccc-cchheeecccccccCC-cchhHHHHHHHHHHHHHHHHHHhccCc
Q 015348 3 VNFFLKDSLN------VDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQ-HRVPYIAIGAFLQAVSWLAIAILSQSS 74 (408)
Q Consensus 3 ~~~~l~~~l~------~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~-grk~~l~~~~~~~~~~~~~~~~~~~~~ 74 (408)
+..|+++++| .|+.+.|++.+...++..+ .+++|+++|| + |||+.+..+.++..++.+++.+.+
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-----~~g~r~~~~~~~~~~~~~~~~~~~~~--- 106 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-----FFGKYNTILWLSLIYCVGHAFLAIFE--- 106 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-----SSCSHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHhc---
Confidence 3567888999 9999999999999977766 8999999999 9 999999999999999888887764
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhH---HHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 015348 75 ISIFTMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQ---SFVWMSSSMGGVLGNLLVGFAIDRFSP 151 (408)
Q Consensus 75 ~~~~~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~g~~ig~~l~~~l~~~~g~ 151 (408)
.+++.+++.|++.|++.+...+...+++.|..|+++ |++.. ++.+...++|..+||.+++.+.+..||
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA 177 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 268889999999999999999999999999999865 65544 448889999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcc-cccccCCCCCcchhH--------H------HH---HHH-------------------
Q 015348 152 PSMFLFFGLLVVLQFFITIAVR-ESALKLPKSQSNVGI--------R------AQ---LSE------------------- 194 (408)
Q Consensus 152 ~~~f~i~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~--------~------~~---~~~------------------- 194 (408)
|+.|++.++..++..+...+.+ +.+++++++++..+. + +. ...
T Consensus 178 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (524)
T 2xut_A 178 AVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGI 257 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhh
Confidence 9999998888776655544322 211111100000000 0 00 000
Q ss_pred ----------------------HH---------HhcccchhHHHHHHHHh---hhcccccccceeEEEEEeccCCCh-hh
Q 015348 195 ----------------------LS---------AALRKPEIMYSVAWFAA---SYSIIPVLTGTMFFYQTQNLKIRS-SV 239 (408)
Q Consensus 195 ----------------------~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~-~~ 239 (408)
.. +..+++..+........ .+..........+.+ ....+.+. ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 336 (524)
T 2xut_A 258 VAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQ-ANDMVKPQWFE 336 (524)
T ss_dssp SHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHH-HHHSCCCSSSC
T ss_pred hhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHh-HHhcCCCeeec
Confidence 00 00011222222211111 111111111111111 11122211 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----ccCCCc----eehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHH
Q 015348 240 LGISKVFGQAAMLLWGVIYNSGL----KSVSPR----KLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLL 311 (408)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~~~l~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
.+.......++.++...+.+++. +|.++| +.+..+..+.++..+..... ..... .......+.+....+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~l 414 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTI-QLMMD-GGSALSIFWQILPYAL 414 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTT-TTTTT-TTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHhc-CCCCcCHHHHHHHHHH
Confidence 45555554555555555555543 444322 23344444444333321110 00000 0011222234455566
Q ss_pred HHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015348 312 EVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASY 363 (408)
Q Consensus 312 ~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~ 363 (408)
.+++.....|. .++..|..|++.||+++|+.++..++|+.++|.+.|.+.+.
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66766666666 88899999999999999999999999999999999988763
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.35 E-value=2e-12 Score=120.50 Aligned_cols=154 Identities=13% Similarity=0.078 Sum_probs=127.5
Q ss_pred hhhhhhhccCCCHHHHHHHHHhhcccccc-cchheeecccccccCC--cchhHHHHHHHHHH-HHHHHHHHhccCcchHH
Q 015348 3 VNFFLKDSLNVDPSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQ--HRVPYIAIGAFLQA-VSWLAIAILSQSSISIF 78 (408)
Q Consensus 3 ~~~~l~~~l~~s~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~--grk~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (408)
.+.|+++++|.++.+.+++.+...+..++ .++.|+++|| + +||+.+..+..+.. ++.+++.+.+ ..+.+
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 347 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-----VFRGNRGATGVFFMTLVTIATIVYWMNP--AGNPT 347 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSTTCHHHHHHHHHHHHHHHHHHTTSCC--TTCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCchhHHHHHHHHHHHHHHHHHHhc--ccCHH
Confidence 35677777999999999999998876666 8999999999 8 99998887776665 5555554443 22677
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHhhcCChhhHHHH
Q 015348 79 TMSLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSFVWMSSSM-GGVLGNLLVGFAIDRFSPPSMFLF 157 (408)
Q Consensus 79 ~~~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~l~~~l~~~~g~~~~f~i 157 (408)
.+....++.|++.+...+...+++.|..|+++ |++++++.+....+ |..++|.+.|.+.+..||+..|++
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 418 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77888888999888888888899999998753 99999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 015348 158 FGLLVVLQFFITIAV 172 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (408)
.+++.++..+..++.
T Consensus 419 ~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 419 MIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887776655553
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.34 E-value=4e-12 Score=119.90 Aligned_cols=153 Identities=11% Similarity=-0.010 Sum_probs=116.0
Q ss_pred hhHHHHHHHHhhhcccccccceeEEEEEec-----cCCChhhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCceehHHHHH
Q 015348 203 EIMYSVAWFAASYSIIPVLTGTMFFYQTQN-----LKIRSSVLGISKVFGQAAMLLWGVIYNSGLKS-VSPRKLISAIQA 276 (408)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 276 (408)
.++......++............+.|..+. +|.+..+.+++.+...++..++.++.|++.|| +|+|+.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 334444444333333333334455566665 89999999999999999999999999999999 899999988887
Q ss_pred HHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCch--hHHHHHHHHHHHHHHHHHH
Q 015348 277 MMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGC--EGSIMAFVMSAVALAFIVS 353 (408)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~--~g~~~g~~~~~~~lg~~ig 353 (408)
+..+..+... ..++.+.+....+..+++.+...|. .+++.|..|+++ |++.++..+...++|..++
T Consensus 94 ~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 94 LIMLGHIVLA-----------LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp HHHHHHHHHH-----------SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 7776655422 1233335556667777777767777 899999999988 7888998999999999999
Q ss_pred HHHHHHHHHhcCC
Q 015348 354 GYLGVALASYTGV 366 (408)
Q Consensus 354 ~~~~g~l~~~~g~ 366 (408)
|.+++.+.+..|+
T Consensus 163 ~~~~~~l~~~~g~ 175 (491)
T 4aps_A 163 PLIVGAAQEAAGY 175 (491)
T ss_dssp HHHHHHHHHHSCH
T ss_pred HHHHHHHHhhhhH
Confidence 9999999988664
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.32 E-value=3.4e-12 Score=118.44 Aligned_cols=126 Identities=8% Similarity=-0.042 Sum_probs=105.2
Q ss_pred EEEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhh
Q 015348 228 YQTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIF 307 (408)
Q Consensus 228 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
...+++|.+..+.|++.+...++..++.++.|++.||+|+|+.+..+.++.++..+..... ....+.+.+..
T Consensus 51 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~ 122 (438)
T 3o7q_A 51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA--------AEIMNYTLFLV 122 (438)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--------HHTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc--------cccccHHHHHH
Confidence 3567799999999999999999999999999999999999999998888877765553110 11233345566
Q ss_pred hHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015348 308 SSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALA 361 (408)
Q Consensus 308 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~ 361 (408)
..+..+++.+...|. .+++.|..|+++|++..++.+...++|..++|.+++.+.
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778887777766 899999999999999999999999999999999999998
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.29 E-value=2.2e-12 Score=117.19 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=104.3
Q ss_pred EEeccCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccccccCcCceEeehhhh
Q 015348 229 QTQNLKIRSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFS 308 (408)
Q Consensus 229 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
+.+++|.++.+.++..+...++..++.++.|++.||+|+|+.+..+.....+....... .++.+.+...
T Consensus 26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~ 94 (375)
T 2gfp_A 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT-----------TSSLTVLIAA 94 (375)
T ss_dssp HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----------hccHHHHHHH
Confidence 45668999999999999999999999999999999999999999888777766554322 1222345555
Q ss_pred HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015348 309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTG 365 (408)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g 365 (408)
.+..+++.....|. .+++.|..|+++|++.++..+...++|..++|.+++.+.+..|
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 66677777766777 8899999999999999999999999999999999999987655
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.25 E-value=1.1e-11 Score=117.85 Aligned_cols=154 Identities=10% Similarity=-0.034 Sum_probs=112.1
Q ss_pred chhHHHHHHHHhhhcccccccceeEEEEEeccC------CChhhHHHHHHHHHHHHHHHHHHHHHhhccC-CCceehHHH
Q 015348 202 PEIMYSVAWFAASYSIIPVLTGTMFFYQTQNLK------IRSSVLGISKVFGQAAMLLWGVIYNSGLKSV-SPRKLISAI 274 (408)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 274 (408)
|.++...+..++............+.|..+++| .++.+.|++.....++..++.++.|++.||+ |+|+.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 344444444444333333334445556666788 9999999999999999999999999999999 999998888
Q ss_pred HHHHHHHHHHhHhhhcccccccCcCceEeehhhhHHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHH---HHHHHHHHH
Q 015348 275 QAMMAVFMISDVLFVKGVYREMGVPDSLYVLIFSSLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAF---VMSAVALAF 350 (408)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~---~~~~~~lg~ 350 (408)
.++..+..+.... .+.+.+.+....+..+++.+...|. .+++.|..|+++|++..+. .+...++|.
T Consensus 92 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 92 SLIYCVGHAFLAI----------FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHHHHH----------TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 7776665544221 1113334455566677777766677 8999999999999766555 889999999
Q ss_pred HHHHHHHHHHHHhcC
Q 015348 351 IVSGYLGVALASYTG 365 (408)
Q Consensus 351 ~ig~~~~g~l~~~~g 365 (408)
.++|.+++.+.+..|
T Consensus 162 ~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 162 FFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHHHTSTHHHHTSC
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999988655
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.21 E-value=1.6e-11 Score=113.19 Aligned_cols=156 Identities=8% Similarity=0.087 Sum_probs=117.7
Q ss_pred hhhhhccCCC---HHHHHHHHHhhcccccc-cchheeecccccccCCcchhHHHHHHHHHHHHHHHHHHhccCcchHHHH
Q 015348 5 FFLKDSLNVD---PSTLQLLQNSANLPMVG-KPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSWLAIAILSQSSISIFTM 80 (408)
Q Consensus 5 ~~l~~~l~~s---~~~~g~~~~~~~~~~~~-~~~~G~l~Dr~~~~~~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (408)
.|+++.++.+ ..+.+...++..+..++ .++.|+++|| +|||+.+..+..+.+++.+...+.+ +.+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-----~g~~~~l~~~~~~~~~~~~~~~~~~----~~~~~ 315 (417)
T 2cfq_A 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-----IGGKNALLLAGTIMSVRIIGSSFAT----SALEV 315 (417)
T ss_dssp HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHTTCC----SHHHH
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHHHHHHHHhc----cHHHH
Confidence 4555555532 34556666665544444 7889999999 9999999888888777766666655 67777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhccCCCccchhhccCcchhHHH-HHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 015348 81 SLFLLLSNLGASIAEVANDALVAEMAKQPMTSSKKAQSSSGELQSF-VWMSSSMGGVLGNLLVGFAIDRFSPPSMFLFFG 159 (408)
Q Consensus 81 ~~~~~l~g~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~l~~~l~~~~g~~~~f~i~~ 159 (408)
++..++.+++.+...+...+++.|..|++ .|++.++. .+....+|..++|.++|.+.+..|++..|.+.+
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~---------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFEVR---------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 77777888887777666678899998875 48888887 477888999999999999999889999999988
Q ss_pred HHHHHHHHHhhh-ccccccc
Q 015348 160 LLVVLQFFITIA-VRESALK 178 (408)
Q Consensus 160 ~~~~~~~~~~~~-~~e~~~~ 178 (408)
++.++..+..++ .||+++.
T Consensus 387 ~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHHHhhhcCCCch
Confidence 887777665444 6665443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.96 E-value=2.2e-09 Score=101.05 Aligned_cols=163 Identities=12% Similarity=0.136 Sum_probs=113.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceehHHHHHHHHHHHHHhHhhhcccc-------cccCcCceEeehhhh
Q 015348 236 RSSVLGISKVFGQAAMLLWGVIYNSGLKSVSPRKLISAIQAMMAVFMISDVLFVKGVY-------REMGVPDSLYVLIFS 308 (408)
Q Consensus 236 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 308 (408)
+....|++.+...++.++|.++.|+++||+|||+.+..+.++..+..+...+...... .......+...+++.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 3456778888889999999999999999999999999888877776554332100000 000122344456667
Q ss_pred HHHHHHHHHhhhhH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHhhhhh
Q 015348 309 SLLEVMFFFKILPF-SVYIAQVCPPGCEGSIMAFVMSAVALAFIVSGYLGVALASYTGVTGDDFSGLPLALIIQAVCTIL 387 (408)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~lg~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 387 (408)
-+..|++.+...+. .+++.|..|+++|++..++.+.....|..+++.++..+.+..+..............+..+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 77788887777777 89999999999999999999999999999998888877766554433333333344444444444
Q ss_pred hhhhhhccCCC
Q 015348 388 PLYWSYFMPDG 398 (408)
Q Consensus 388 ~~~~~~~~~~~ 398 (408)
.+...+..||.
T Consensus 213 ~~~~~~~~peS 223 (491)
T 4gc0_A 213 FLMLLYTVPES 223 (491)
T ss_dssp HHHHGGGSCCC
T ss_pred hhhhhhcCCCC
Confidence 44555667764
Done!