BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015349
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding
Protein-3
Length = 150
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 257 SASNSTSASVFGQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VST 312
S S+ T+ ++V V TGEE E V LF F SW ERG+G L++N ST
Sbjct: 3 SGSSGTARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMAST 62
Query: 313 N-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 361
+ T ++RL+MR +G+ RLILN L+ M++ +K I +++ +G
Sbjct: 63 DDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQG 112
>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|C Chain C, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|D Chain D, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
Length = 138
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 270 EVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN-ATGRARLLMRA 324
+V V TGEE E V LF F SW ERG+G L++N ST+ T ++RL+MR
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 325 RGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 361
+G+ RLILN L+ M++ +K I +++ +G
Sbjct: 64 QGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQG 100
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 191
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 266 VFGQEVVVETGEENEKVVFSADSVLFEF-LDGS-WKERGKGELKVNVSTNATGRARLLMR 323
V ++V V+T EE+E+V++ + LF F D WKERG G+ K + T + R+LMR
Sbjct: 59 VHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKF-LKNKKTNKVRILMR 117
Query: 324 ARGNYRLILNASLYPDMKL---TNMDKKGITFACINSATEGKSGLSTFALKF 372
++ N + P+ L D+ + +AC EG++ TFA++F
Sbjct: 118 RDKTLKICANHIIAPEYTLKPNVGSDRSWV-YACTADIAEGEAEAFTFAIRF 168
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
Length = 140
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 266 VFGQEVVVETGEENEKVVFSADSVLFEFLDGS--WKERGKGELKVNVSTNATGRARLLMR 323
V ++V V+T EE+E+V++ + LF F + WKERG G+ K + T + R+LMR
Sbjct: 8 VHLEKVDVKTAEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKF-LKNKKTNKVRILMR 66
Query: 324 ARGNYRLILNASLYPDMKL---TNMDKKGITFACINSATEGKSGLSTFALKF 372
++ N + P+ L D+ + +AC EG++ TFA++F
Sbjct: 67 RDKTLKICANHIIAPEYTLKPNVGSDRSWV-YACTADIAEGEAEAFTFAIRF 117
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|B Chain B, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|B Chain B, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|B Chain B, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 140
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 266 VFGQEVVVETGEENEKVVFSADSVLFEFLDGS--WKERGKGELKVNVSTNATGRARLLMR 323
V ++V V+T EE+E+V++ + LF F + WKERG G+ K + T + R+LMR
Sbjct: 8 VHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKF-LKNKKTNKVRILMR 66
Query: 324 ARGNYRLILNASLYPDMKL---TNMDKKGITFACINSATEGKSGLSTFALKF 372
++ N + P+ L D+ + +AC EG++ TFA++F
Sbjct: 67 RDKTLKICANHIIAPEYTLKPNVGSDRSWV-YACTADIAEGEAEAFTFAIRF 117
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From
Human Ranbp2
Length = 130
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 275 TGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRARGNYRLI 331
+GEE+EKV++S LF F D WKERG G LK+ + G+ R+LMR ++
Sbjct: 2 SGEEDEKVLYSQRVKLFRF-DAEVSQWKERGLGNLKI-LKNEVNGKLRMLMRREQVLKVC 59
Query: 332 LNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 388
N + M L + D+ + A + ++G + L A KF+ + EEF+
Sbjct: 60 ANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLEQLAAKFKTPELAEEFKQ---KF 114
Query: 389 KDKTTAVLKTPENSPK 404
++ +L P +PK
Sbjct: 115 EECQRLLLDIPLQTPK 130
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 141
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 266 VFGQEVVVETGEENEKVVFSADSVLFEFLDGS---WKERGKGELKVNVSTNATGRARLLM 322
V ++V V+T EE+E+V++ + LF F D WKERG G+ K + T + R+LM
Sbjct: 9 VHLEKVDVKTMEEDEEVLYKVRAKLFRF-DADAKEWKERGTGDCKF-LKNKKTNKVRILM 66
Query: 323 RARGNYRLILNASLYPDMKL---TNMDKKGITFACINSATEGKSGLSTFALKF 372
R ++ N + P+ L D+ + +AC EG++ TFA++F
Sbjct: 67 RRDKTLKICANHIIAPEYTLKPNVGSDRSWV-YACTADIAEGEAEAFTFAIRF 118
>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
pdb|2Y8G|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
Length = 138
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 270 EVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN-ATGRARLLMRA 324
+V V TGEE E V LF F SW G+G L++N ST+ T ++RL+MR
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 325 RGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 361
+G+ RLILN L+ M++ +K I +++ +G
Sbjct: 64 QGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQG 100
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|D Chain D, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 134
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 270 EVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTNATGRARLLMRARGN 327
++ V+TGEE+E+ F + LF F WKERG G +K+ + +G+ RLLMR
Sbjct: 11 KIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKI-LRHKTSGKIRLLMRREQV 69
Query: 328 YRLILNASLYPDMKLT 343
++ N + PDMKLT
Sbjct: 70 LKICANHYISPDMKLT 85
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
pdb|3N7C|B Chain B, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 276 GEENEKVVFS--ADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILN 333
GEENE+V+F A ++F+ + RG GELK+ + G+ R+L R+ G ++LN
Sbjct: 6 GEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGXGHVLLN 65
Query: 334 ASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFR 373
S+ K +D T+GK L TF +K +
Sbjct: 66 TSVVKSFKYQPIDADNENLIKWPIITDGK--LETFIIKVK 103
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 276 GEENEKVVFS--ADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILN 333
GEENE+V+F A ++F+ + RG GELK+ + G+ R+L R+ G ++LN
Sbjct: 6 GEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLXRSEGXGHVLLN 65
Query: 334 ASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFR 373
S+ K +D T+GK L TF +K +
Sbjct: 66 TSVVKSFKYQPIDADNENLIKWPIITDGK--LETFIIKVK 103
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 201
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 273 VETGEENEKVVFSADSVLFEFLDGS----WKERGKGELKVNVSTNATGRARLLMRARGNY 328
++T EE+E+ +F + LF F + WKERG G++K+ + G RLLMR
Sbjct: 38 IKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKL-LKHKEKGAIRLLMRRDKTL 96
Query: 329 RLILNASLYPDMKL 342
++ N + P M+L
Sbjct: 97 KICANHYITPMMEL 110
>pdb|2EC1|A Chain A, Solution Structure Of The Ranbd1 Domain From Human
Nucleoporin 50 Kda
Length = 125
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 280 EKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNY-RLILNASLYP 338
E +S LF D +KE+G G L + + N + +LL+RA N ++LN + P
Sbjct: 12 EDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQ--KTQLLVRADTNLGNILLNVLIPP 69
Query: 339 DMKLTNMDKKGITFACI 355
+M T K + C+
Sbjct: 70 NMPCTRTGKNNVLIVCV 86
>pdb|2YLE|A Chain A, Crystal Structure Of The Human Spir-1 Kind Fsi Domain In
Complex With The Fsi Peptide
pdb|2YLF|A Chain A, Crystal Structure Of The Human Spir-1 Kind Domain
Length = 229
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 95 KTVSPAATELLESSENKVSVDANNDAGKE-AEKGDG-EDNKQSESKI 139
+ +SP +L++ N V D +ND G E AE+G G ED K+ S I
Sbjct: 140 RELSPPLEQLIDHMANTVEADGSNDEGYEAAEEGLGDEDEKRKISAI 186
>pdb|3R7G|A Chain A, Crystal Structure Of Spire Kind Domain In Complex With The
Tail Of Fmn2
pdb|3RBW|A Chain A, Crystal Structure Of Spire Kind Domain
pdb|3RBW|B Chain B, Crystal Structure Of Spire Kind Domain
pdb|3RBW|C Chain C, Crystal Structure Of Spire Kind Domain
pdb|3RBW|D Chain D, Crystal Structure Of Spire Kind Domain
Length = 220
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 95 KTVSPAATELLESSENKVSVDANNDAGKE-AEKGDG-EDNKQSESKI 139
+ +SP +L++ N V D +ND G E AE+G G ED K+ S I
Sbjct: 130 RELSPPLEQLIDHMANTVEADGSNDEGYEAAEEGLGDEDEKRKISAI 176
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 330 LILNASLYPDMKLTNM-DKKGITFACINSATEGKSGLSTFALK 371
LIL A L+P +KL + ++KG+T + +A+ GK G+ + L+
Sbjct: 213 LILGAKLHPTLKLEEITNRKGLTPLAL-AASSGKIGVLAYILQ 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.303 0.121 0.323
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,772,682
Number of Sequences: 62578
Number of extensions: 336059
Number of successful extensions: 413
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 22
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 53 (25.0 bits)