BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015349
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2
PE=2 SV=2
Length = 1085
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 185 VEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIKI-LQNYENKQVRIVMRRDQVL 243
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEF---- 381
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F
Sbjct: 244 KLCANHRITPDMTLQNMKGTERVWVWTAC--DFADGERKIEHLAVRFKLQDVADSFKKIF 301
Query: 382 -QTAVAAHKDKTTAVLKTPENSPKAT 406
+ VA KD L TP + AT
Sbjct: 302 DEAKVAQEKD----FLITPHVARSAT 323
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 44/222 (19%)
Query: 200 VDKPEN-EDEKETSHETTDS--SQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDG 256
VDKP + KE ++T S+ +FG S +F LA + ++ FAFGS K+
Sbjct: 679 VDKPVDLSTRKENDADSTSQVESKTVTFGFGSGPGLSFADLASS--NSGDFAFGSKDKNF 736
Query: 257 SASNSTSASVFG---------------QEVV-----------------VETGEENEKVVF 284
+N T A+VFG +EVV V++GEE+E+++F
Sbjct: 737 QWAN-TGAAVFGAQSTSKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILF 795
Query: 285 SADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKL 342
+ L+ + WK+RG G++K+ T R+LMR +++ N + M+L
Sbjct: 796 KERAKLYRWDREASQWKDRGVGDIKILWHT-VKNYFRILMRRDQVFKVCANHVITKTMEL 854
Query: 343 --TNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
N+ + + + A +G++ + A++F+ + + F+
Sbjct: 855 KPLNVSNNALVWTASDYA-DGEAKVEQLAVRFKTKEMADCFK 895
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1
Length = 567
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 259 SNSTSASVFGQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN- 313
+ +T+ ++V V TGEE E V LF F SW ERG+G L++N ST+
Sbjct: 377 TKATARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDD 436
Query: 314 ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 361
T ++RL+MR +G+ RLILN L+ M++ +K I +++ +G
Sbjct: 437 GTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQG 484
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2
Length = 491
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 259 SNSTSASVFGQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN- 313
+ +T+ + ++V V TGEE E V LF F SW ERG+G L++N ST+
Sbjct: 301 TKATAWTCLLEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDD 360
Query: 314 ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 361
T ++RL+MR +G+ RLILN L+ M++ +K I ++ +G
Sbjct: 361 GTLQSRLVMRTQGSLRLILNTKLWAQMQMDKASEKSIRITATDAEDQG 408
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1
Length = 499
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 259 SNSTSASVFGQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN- 313
+ +T+ ++V V TGEE E V LF F SW ERG+G L++N ST+
Sbjct: 309 TKATARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDD 368
Query: 314 ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 361
T ++RL+MR +G+ RLILN L+ M++ +K I +++ +G
Sbjct: 369 GTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQG 416
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens
GN=RGPD4 PE=2 SV=3
Length = 1758
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENEKVVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 1345 VEVSSGEENEKVVFSHRAELYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1403
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
+L N ++ PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1404 KLCANHTITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1458
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 270 EVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRARG 326
E+V+ GEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1049 ELVI--GEEGEKVLYSQGVKLFRF-DAEVRQWKERGLGNLKI-LKNEVNGKPRMLMRREQ 1104
Query: 327 NYRLILNASLYPDMKLTNMDKKGITFACINSA---TEGKSGLSTFALKFRDASIVEEFQT 383
++ N + M L + G A + SA ++G + L A KF+ + EEF+
Sbjct: 1105 VLKVCANHWITTTMNLKPLS--GSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFKQ 1162
Query: 384 AVAAHKDKTTAVLKTPENSPKATDD 408
++ +L P +P D
Sbjct: 1163 KF---EECQQLLLDIPLQTPHKLVD 1184
>sp|Q86VV4|RNB3L_HUMAN Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2
Length = 465
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 237 LAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQEVVVETGEENEKVVFSADSVLFEF--L 294
+ T S AF S P S +++ V TGEE E V + LF F
Sbjct: 262 IKNTSLIESAAAFSSQP---------SRKCLLEKIDVITGEETEHNVLKINCKLFIFNKT 312
Query: 295 DGSWKERGKGELKVN--VSTNA-TGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGI 350
SW ERG+G L++N ST+ T ++RL+MR +G+ RLILN+ L+ MK+ + K +
Sbjct: 313 TQSWIERGRGTLRLNDTASTDCGTLQSRLIMRNQGSLRLILNSKLWAQMKIQRANHKNV 371
>sp|Q5R4Y2|RANB3_PONAB Ran-binding protein 3 OS=Pongo abelii GN=RANBP3 PE=2 SV=1
Length = 494
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 259 SNSTSASVFGQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN- 313
+ +T+ ++V V TGEE E V LF F SW ERG+G L++N ST+
Sbjct: 304 TKATARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDD 363
Query: 314 ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINS 357
T ++RL+MR +G+ RLILN L+ M++ +K I +++
Sbjct: 364 GTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDT 407
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 2320 VEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 2378
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 2379 KLCANHRITPDMTLQNMKGTERVWLWTAC--DFADGERKVEHLAVRFKLQDVADSFK 2433
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 325
++V + TGEE+EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 2021 EKVELVTGEEDEKVLYSQRVKLFRF-DAEVSQWKERGLGNLKI-LKNEVNGKLRMLMRRE 2078
Query: 326 GNYRLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
++ N + M L + D+ + A + ++G + L A KF+ + EEF+
Sbjct: 2079 QVLKVCANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLEQLAAKFKTPELAEEFK 2136
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 270 EVVVETGEENEKVVFSADSVLFEFLDGS--WKERGKGELKVNVSTNATGRARLLMRARGN 327
++ V+TGEE+E+ F + LF F S WKERG G +K+ + +G+ RLLMR
Sbjct: 1181 KIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKI-LRHKTSGKIRLLMRREQV 1239
Query: 328 YRLILNASLYPDMKLT 343
++ N + PDMKLT
Sbjct: 1240 LKICANHYISPDMKLT 1255
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 49/227 (21%)
Query: 200 VDKPEN---EDEKETSHETTDSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDG 256
+DKP + E +T + S++ SFG SST +F LA + ++ FAFGS K+
Sbjct: 2813 MDKPVDLSTRKEIDTDSTSQGESKIVSFGFGSSTGLSFADLASS--NSGDFAFGSKDKNF 2870
Query: 257 SASNSTSASVFG--------------------QEVV-----------------VETGEEN 279
+N T A+VFG +EVV V++GEE+
Sbjct: 2871 QWAN-TGAAVFGTQSVGTQSAGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEED 2929
Query: 280 EKVVFSADSVLFEF-LDGS-WKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLY 337
E+++F + L+ + D S WKERG G++K+ T R+LMR +++ N +
Sbjct: 2930 EEILFKERAKLYRWDRDVSQWKERGVGDIKILWHT-MKNYYRILMRRDQVFKVCANHVIT 2988
Query: 338 PDMKL--TNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
M+L N+ + + + A +G++ + A++F+ + + F+
Sbjct: 2989 KTMELKPLNVSNNALVWTASDYA-DGEAKVEQLAVRFKTKEVADCFK 3034
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens
GN=RGPD1 PE=2 SV=1
Length = 1748
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 1329 VEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1387
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1388 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1442
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 325
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1030 EKVELVTGEEGEKVLYSQGVKLFRF-DAEISQWKERGLGNLKI-LKNEVNGKPRMLMRRD 1087
Query: 326 GNYRLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
++ N + M L + D+ + A + ++G + L A +F+ + EEF+
Sbjct: 1088 QVLKVCANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLERLAAQFKTPELAEEFK 1145
Query: 383 TAVAAHKDKTTAVLKTPENSPKATDD 408
++ +L P +P D
Sbjct: 1146 QKF---EECQRLLLDIPLQTPHKLVD 1168
>sp|Q09146|HBA1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hba1 PE=1 SV=1
Length = 399
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 23/144 (15%)
Query: 256 GSASNSTSASVFGQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNV-ST 312
G ++ ST + E++ TGEE E+ +FS + L+ D +WKERG+G LKVNV
Sbjct: 253 GDSTKSTMHQLSDSEII--TGEEEEESIFSVRARLYVVADEKKTWKERGQGILKVNVPKQ 310
Query: 313 NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSA-----------TEG 361
+G RLLMR +R+I+N L+ M KK + A +S G
Sbjct: 311 RGSGSGRLLMRNDAVHRVIMNVPLF-----QGMSKKSLQIASASSGGSANYLKIFVIENG 365
Query: 362 KSGLSTFALKFRDASIVEEFQTAV 385
KS L +A++ +D S+ E+ + V
Sbjct: 366 KSVL--YAVRVKDNSLAEQLRNHV 387
>sp|P0DJD1|RGPD2_HUMAN RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens
GN=RGPD2 PE=2 SV=1
Length = 1756
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 1337 VEVSSGEENEQVVFSHMAELYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1395
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1396 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1450
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 325
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1038 EKVELVTGEEGEKVLYSQGVKLFRF-DAEISQWKERGLGNLKI-LKNEVNGKPRMLMRRD 1095
Query: 326 GNYRLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
++ N + M L + D+ + A + ++G + L A +F+ + EEF+
Sbjct: 1096 QVLKVCANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLERLAAQFKTPELAEEFK 1153
Query: 383 TAVAAHKDKTTAVLKTPENSPKATDD 408
++ +L P +P D
Sbjct: 1154 QKF---EECQRLLLDIPLQTPHKLVD 1176
>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens
GN=RGPD3 PE=2 SV=2
Length = 1758
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENE+VVFS + + + G WKERG G++K+ + R+LMR
Sbjct: 1345 VEVSSGEENEQVVFSHRAEFYRYDKDVGQWKERGIGDIKI-LQNYDNKHVRILMRRDQVL 1403
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1404 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1458
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 325
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LM+
Sbjct: 1046 EKVELVTGEEGEKVLYSQGVKLFRF-DAEVSQWKERGLGNLKI-LKNEVNGKVRMLMQRE 1103
Query: 326 GNYRLILNASLYPDMKLTNMDKKGITFACINSA---TEGKSGLSTFALKFRDASIVEEFQ 382
++ N + M L + G A + SA ++G + L A KF+ + EEF+
Sbjct: 1104 QVLKVCANHWITTTMNLKPLS--GSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFK 1161
Query: 383 TAVAAHKDKTTAVLKTPENSPKATDD 408
++ +L P +P D
Sbjct: 1162 QKF---EECQRLLLDIPLQTPHKLVD 1184
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 2157 VEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 2215
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAV 385
+L N + PDM L M ++ + AC +G+ + A++F+ + + F+
Sbjct: 2216 KLCANHRITPDMTLQTMKGTERVWVWTAC--DFADGERKIEHLAVRFKLQDVADSFKKIF 2273
Query: 386 -----AAHKDKT----TAVLKTPENSP 403
A KD + L TP SP
Sbjct: 2274 DEAKTAQEKDSLITPHVSHLSTPRESP 2300
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 270 EVVVETGEENEKVVFSADSVLFEFLDGS---WKERGKGELKVNVSTNATGRARLLMRARG 326
++ V+TGEE+E+ F + LF F DG WKERG G +K+ + +G+ RLLMR
Sbjct: 1175 KIEVKTGEEDEEEFFCNRAKLFRF-DGESKEWKERGIGNVKI-LRHKTSGKIRLLMRREQ 1232
Query: 327 NYRLILNASLYPDMKLT 343
++ N + PDMKLT
Sbjct: 1233 VLKICANHYISPDMKLT 1249
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 325
++V + TGEE+EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1858 EKVELVTGEEDEKVLYSQRVKLFRF-DAEISQWKERGLGNLKI-LKNEVNGKLRMLMRRE 1915
Query: 326 GNYRLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
++ N + M L + D+ + A + ++G + L A KF+ + EEF+
Sbjct: 1916 QVLKVCANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLEQLAAKFKTPELAEEFK 1973
Query: 383 TAVAAHKDKTTAVLKTPENSPKATDD 408
++ +L P +P D
Sbjct: 1974 QKF---EECQRLLLDIPLQTPHKLVD 1996
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 41/195 (21%)
Query: 224 FGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQ-------------- 269
FG S T +F LA + ++ FAFGS K+ +N T A+VFG
Sbjct: 2674 FGFGSGTGLSFADLASS--NSGDFAFGSKDKNFQWAN-TGAAVFGTQTTSKGGEDEDGSD 2730
Query: 270 ------------------EVVVETGEENEKVVFSADSVLFEF-LDGS-WKERGKGELKVN 309
EV V++GEE+E+V+F + L+ + D S WKERG G++K+
Sbjct: 2731 EDVVHNEDIHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQWKERGIGDIKIL 2790
Query: 310 VSTNATGRARLLMRARGNYRLILNASLYPDMKL--TNMDKKGITFACINSATEGKSGLST 367
T R+LMR +++ N + M+L N+ + + + A +G++ +
Sbjct: 2791 WHT-MKKYYRILMRRDQVFKVCANHVITKAMELKPLNVSNNALVWTASDYA-DGEAKVEQ 2848
Query: 368 FALKFRDASIVEEFQ 382
A++F+ + E F+
Sbjct: 2849 LAVRFKTKEMTESFK 2863
>sp|O14715|RGPD8_HUMAN RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens
GN=RGPD8 PE=1 SV=2
Length = 1765
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENE+VVFS + ++ + G WKERG G++K+ + + R++MR
Sbjct: 1344 VEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1402
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1403 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1457
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 325
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1045 EKVELVTGEEGEKVLYSQGVKLFRF-DAEVRQWKERGLGNLKI-LKNEVNGKLRMLMRRE 1102
Query: 326 GNYRLILNASLYPDMKLTNMDKKGITFACINSA---TEGKSGLSTFALKFRDASIVEEFQ 382
++ N + M L + G A + SA ++G + L A KF+ + EEF+
Sbjct: 1103 QVLKVCANHWITTTMNLKPLS--GSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFK 1160
Query: 383 TAVAAHKDKTTAVLKTPENSPKATDD 408
++ +L P +P D
Sbjct: 1161 QKF---EECQRLLLDIPLQTPHKLVD 1183
>sp|Q99666|RGPD5_HUMAN RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens
GN=RGPD5 PE=1 SV=3
Length = 1765
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
V V +GEENE+VVFS + ++ + G WKERG G++K+ + + R++MR
Sbjct: 1344 VEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1402
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 382
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1403 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1457
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 325
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1045 EKVELVTGEEGEKVLYSQGVKLFRF-DAEVRQWKERGLGNLKI-LKNEVNGKLRMLMRRE 1102
Query: 326 GNYRLILNASLYPDMKLTNMDKKGITFACINSA---TEGKSGLSTFALKFRDASIVEEFQ 382
++ N + M L + G A + SA ++G + L A KF+ + EEF+
Sbjct: 1103 QVLKVCANHWITTTMNLKPLS--GSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFK 1160
Query: 383 TAVAAHKDKTTAVLKTPENSPKATDD 408
++ +L P +P D
Sbjct: 1161 QKF---EECQRLLLDIPLQTPHKLVD 1183
>sp|Q6PDH4|RNB3L_MOUSE Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=2 SV=1
Length = 491
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 259 SNSTSASVFGQEVVVETGEENEKVVFSADSVLFEFLDG--SWKERGKGELKVNVSTN--- 313
S+ S +++ V TGEE E V + +F F SW ERG+G L++N +
Sbjct: 300 SSKPSQKCLLEKIDVITGEETEHNVLKINCKIFVFNKATESWSERGQGILRLNDTAGREC 359
Query: 314 ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGI 350
T ++RL+MR +G+ RL+LN+ L+ MK+ +K +
Sbjct: 360 GTLQSRLIMRNQGSLRLVLNSRLWAQMKIQRASQKNL 396
>sp|P40517|YRB2_YEAST Ran-specific GTPase-activating protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB2 PE=1
SV=1
Length = 327
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTNATGRARLLMRARG 326
Q+ V++GEE+E+ ++ ++ L++ + WKERG G +K+N S + + R++MR+RG
Sbjct: 201 QKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERGVGIIKINKSKDDVEKTRIVMRSRG 260
Query: 327 NYRLILNASL 336
++ILN L
Sbjct: 261 ILKVILNIQL 270
>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1
SV=1
Length = 201
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 266 VFGQEVVVETGEENEKVVFSADSVLFEF-LDGS-WKERGKGELKVNVSTNATGRARLLMR 323
V ++V V+T EE+E+V++ + LF F D WKERG G+ K + T + R+LMR
Sbjct: 69 VHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKF-LKNKKTNKVRILMR 127
Query: 324 ARGNYRLILNASLYPDMKLT-NM-DKKGITFACINSATEGKSGLSTFALKF 372
++ N + P+ L N+ + +AC EG++ TFA++F
Sbjct: 128 RDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRF 178
>sp|Q9USL4|NUP61_SCHPO Nucleoporin nup61 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup61 PE=1 SV=2
Length = 549
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 276 GEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILN 333
GEENE VF + ++ F S+ + G G LK+NV + TG AR+L R G+ +L+LN
Sbjct: 432 GEENEDSVFETRAKIYRFDATSKSYSDIGIGPLKINVDRD-TGSARILARVEGSGKLLLN 490
Query: 334 ASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEF 381
L D + + KK + ++T+GKS + + ++ ++ S E+
Sbjct: 491 VRLCQDFEYSLAGKKDVKVPA--ASTDGKS-IEMYLIRVKEPSTAEKL 535
>sp|Q09717|RANG_SCHPO Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1
Length = 215
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 284 FSADSVLFEFLDGS--WKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMK 341
F + LF F + WKERG G+ ++ + TG+ RL+MR ++ N L P+MK
Sbjct: 97 FKMRAKLFRFDKAASEWKERGTGDARL-LKHKETGKTRLVMRRDKTLKVCANHLLMPEMK 155
Query: 342 LT-NM-DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAVLK 397
LT N+ + + +EG+ TFA++F ++ F+ ++++ +LK
Sbjct: 156 LTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANLFKENFEKYQEENAKILK 213
>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C
PE=2 SV=1
Length = 219
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 269 QEVVVETGEENEKVVFSADSVLFEF-LDGS-WKERGKGELKVNVSTNATGRARLLMRARG 326
+EV V TGEE+E V S ++ F +G+ WKERG G +K+ + TG+ RL+MR
Sbjct: 34 EEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKL-LKHKETGKVRLVMRQSK 92
Query: 327 NYRLILNASLYPDMKLTNMDKKGITFACINSAT---EGKSGLSTFALKFRDASI 377
++ N + M + + G +C+ AT +G+ F ++F ASI
Sbjct: 93 TLKICANHLISSGMSV--QEHSGNEKSCLWHATDFSDGELKDELFCIRF--ASI 142
>sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50 OS=Mus musculus GN=Nup50 PE=1
SV=3
Length = 466
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNY-R 329
VV E EE+ +S LF D +KE+G G L ++ AT + +LL+RA N
Sbjct: 346 VVTEVKEED--AFYSKKCKLFYKKDNEFKEKGVGTL--HLKPTATQKTQLLVRADTNLGN 401
Query: 330 LILNASLYPDMKLTNMDKKGITFACI 355
++LN + P+M T K + C+
Sbjct: 402 ILLNVLIAPNMPCTRTGKNNVLIVCV 427
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKV-RRNQTASTPSSNPF 71
KR A +EL+ N DEED E E GTF A++EV+ R + K RRN + S F
Sbjct: 3 KRVAEKELTDRN---WDEEDEVE-EMGTFSVASEEVMKNRAVKKAKRRNVGFESDSGGAF 58
Query: 72 AGIR--LVP 78
G + +VP
Sbjct: 59 KGFKGLVVP 67
>sp|Q9UKX7|NUP50_HUMAN Nuclear pore complex protein Nup50 OS=Homo sapiens GN=NUP50 PE=1
SV=2
Length = 468
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 271 VVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNY-R 329
VV E EE+ +S LF D +KE+G G L + + N + +LL+RA N
Sbjct: 348 VVTEVKEED--AFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQ--KTQLLVRADTNLGN 403
Query: 330 LILNASLYPDMKLTNMDKKGITFACI 355
++LN + P+M T K + C+
Sbjct: 404 ILLNVLIPPNMPCTRTGKNNVLIVCV 429
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKV-RRNQTASTPSSNPF 71
KR A +EL+ N D+ED +E E GTF A++EVL R I K RRN + + F
Sbjct: 3 KRNAEKELTDRN---WDQEDEAE-EVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAF 58
Query: 72 AGIR--LVP 78
G + +VP
Sbjct: 59 KGFKGLVVP 67
>sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP2 PE=1 SV=2
Length = 720
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 271 VVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
+ ++ GEE+E +FS + L F S+ RG GE+K+ + + RLL R+ G
Sbjct: 597 INLQNGEEDEVALFSQKAKLMTFNAETKSYDSRGVGEMKLLKKKDDPSKVRLLCRSDGMG 656
Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAV 385
++LNA++ K + + I + A +GK L T+ +KF+ F A+
Sbjct: 657 NVLLNATVVDSFKYEPLAPGNDNLIKAPTV--AADGK--LVTYIVKFKQKEEGRSFTKAI 712
>sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 OS=Mus musculus
GN=Srrm1 PE=1 SV=2
Length = 946
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 67 SSNPFAGIRLVPSTEPSA----TVTPATTEPTKTVSPAATELLESSENKVSVDANNDAGK 122
SS P RL PS P +PAT P SP + + +++VSV +GK
Sbjct: 377 SSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGK 436
Query: 123 EAEKGDGEDNKQSESKIDEPVAVEAASSEPEKG 155
K G + ++S S +P VE + SE +KG
Sbjct: 437 -VTKHKGTEKRESPSPAPKPRKVELSESEEDKG 468
>sp|P45481|CBP_MOUSE CREB-binding protein OS=Mus musculus GN=Crebbp PE=1 SV=3
Length = 2441
Score = 32.0 bits (71), Expect = 8.9, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 87 TPATTEPTKT-VSPAATELLESSENKVSVDANNDAGKEAEKGDGEDNKQSESKIDEPVAV 145
TP T+P T +S AA S +N+V ++ + + + + G D E K + V
Sbjct: 951 TPVHTQPPGTPLSQAAA----SIDNRVPTPSSVTSAETSSQQPGPDVPMLEMKTE----V 1002
Query: 146 EAASSEPEKGEDESSKQTESKNEPASADAAGKKSSDDKENGAEKSEVDNGK 196
+ +EPE E + ++E E + K+ +D E +E EV+ K
Sbjct: 1003 QTDDAEPEPTESKGEPRSEMMEEDLQGSSQVKEETDTTEQKSEPMEVEEKK 1053
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.301 0.119 0.314
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,871,235
Number of Sequences: 539616
Number of extensions: 6092403
Number of successful extensions: 39451
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 2245
Number of HSP's that attempted gapping in prelim test: 26646
Number of HSP's gapped (non-prelim): 9732
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 62 (28.5 bits)