Query 015349
Match_columns 408
No_of_seqs 158 out of 640
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00835 RanBD Ran-binding doma 100.0 5.2E-35 1.1E-39 252.0 15.0 117 271-389 1-121 (122)
2 smart00160 RanBD Ran-binding d 100.0 7.9E-33 1.7E-37 242.4 14.7 118 269-388 8-130 (130)
3 PF00638 Ran_BP1: RanBP1 domai 100.0 1E-32 2.3E-37 235.9 14.7 117 272-390 1-121 (122)
4 COG5171 YRB1 Ran GTPase-activa 100.0 1.2E-29 2.6E-34 232.4 6.1 129 269-398 78-210 (211)
5 KOG2724 Nuclear pore complex c 99.8 3.9E-19 8.4E-24 180.6 10.3 108 278-389 378-486 (487)
6 KOG0864 Ran-binding protein RA 99.6 1.3E-17 2.7E-22 158.0 -1.3 124 269-393 45-175 (215)
7 PF08911 NUP50: NUP50 (Nucleop 99.6 7.1E-17 1.5E-21 129.6 1.5 64 12-79 1-72 (72)
8 cd00837 EVH1 EVH1 (Enabled, Va 99.2 1.8E-10 3.9E-15 97.7 12.6 99 280-388 1-103 (104)
9 KOG0866 Ran-binding protein RA 99.2 5.1E-12 1.1E-16 125.7 3.0 116 269-388 145-265 (327)
10 PF00568 WH1: WH1 domain; Int 98.7 2.2E-07 4.8E-12 79.4 13.1 100 280-389 8-111 (111)
11 cd01207 Ena-Vasp Enabled-VASP- 98.5 9.3E-07 2E-11 77.0 11.4 102 280-391 1-109 (111)
12 cd01206 Homer Homer type EVH1 98.3 5.2E-06 1.1E-10 72.2 9.5 103 279-391 2-109 (111)
13 smart00461 WH1 WASP homology r 97.6 0.00091 2E-08 57.2 11.5 99 280-388 3-105 (106)
14 cd01205 WASP WASP-type EVH1 do 95.2 0.58 1.3E-05 40.8 12.5 96 281-388 5-104 (105)
15 PF08553 VID27: VID27 cytoplas 94.5 0.49 1.1E-05 53.5 13.0 101 281-389 248-352 (794)
16 KOG4590 Signal transduction pr 92.2 0.23 5E-06 52.2 5.4 88 296-393 8-101 (409)
17 KOG3671 Actin regulatory prote 89.8 0.58 1.3E-05 50.4 5.7 92 289-391 46-141 (569)
18 PF06058 DCP1: Dcp1-like decap 84.5 23 0.0005 31.4 11.9 92 285-388 26-121 (122)
19 KOG2724 Nuclear pore complex c 71.9 1 2.2E-05 47.8 -0.7 48 11-62 2-49 (487)
20 PF11531 CARM1: Coactivator-as 56.9 54 0.0012 29.3 7.3 57 327-392 50-106 (114)
21 KOG0866 Ran-binding protein RA 55.6 4.6 9.9E-05 41.6 0.5 53 280-333 242-296 (327)
22 PF07933 DUF1681: Protein of u 52.1 58 0.0013 30.6 7.1 107 280-391 3-124 (160)
23 COG5167 VID27 Protein involved 42.9 1.9E+02 0.0041 32.5 10.1 101 281-389 229-332 (776)
24 PF15411 PH_10: Pleckstrin hom 39.8 58 0.0013 28.6 4.9 22 364-385 95-116 (116)
25 PF07576 BRAP2: BRCA1-associat 37.2 42 0.0009 29.4 3.5 29 361-389 50-78 (110)
26 cd00900 PH-like Pleckstrin hom 27.6 2.5E+02 0.0055 20.7 6.4 24 365-388 76-99 (99)
27 cd01246 PH_oxysterol_bp Oxyste 26.7 2.8E+02 0.006 21.4 6.4 23 366-388 69-91 (91)
28 cd01236 PH_outspread Outspread 23.3 4.7E+02 0.01 22.5 7.6 23 366-388 81-103 (104)
29 PF14109 GldH_lipo: GldH lipop 22.2 1.9E+02 0.0041 25.7 5.1 51 282-336 66-116 (131)
No 1
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=5.2e-35 Score=251.99 Aligned_cols=117 Identities=43% Similarity=0.708 Sum_probs=109.9
Q ss_pred cccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccC--
Q 015349 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD-- 346 (408)
Q Consensus 271 VeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~-- 346 (408)
|+|.||||+|++||++|||||+|++ ++|++||+|+||||++++ ++++|||||+++++||||||+|+++|+++++.
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~-~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~ 79 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKD-TGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNS 79 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCC-CCcEEEEEEeCCccEEEEeeEecCCcEEeecCCC
Confidence 6899999999999999999999987 899999999999999997 89999999999999999999999999999987
Q ss_pred CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhh
Q 015349 347 KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 389 (408)
Q Consensus 347 ~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K 389 (408)
.++|+|+|++ .+|+++++++|+|||+++++|++|+.+|++++
T Consensus 80 ~k~~~~~~~d-~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 80 DKSIVWAAMD-FSDDEPKPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred CcEEEEEeee-cCCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 7999999985 45556789999999999999999999999987
No 2
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=7.9e-33 Score=242.43 Aligned_cols=118 Identities=29% Similarity=0.582 Sum_probs=107.9
Q ss_pred cccccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCC-CceEEEEEecCceeEEeccccccccccccc
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNAT-GRARLLMRARGNYRLILNASLYPDMKLTNM 345 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt-~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~ 345 (408)
++|+|.||||+|++||++|||||+|++ +.|++||+|+||||+++. + +++|||||+++++||||||+|+++|+++++
T Consensus 8 ~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~-~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~ 86 (130)
T smart00160 8 PDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKD-NGGKVRIVMRRDGVLKVCANHPIFKSMTLKPL 86 (130)
T ss_pred ccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCC-CCCeEEEEEEECCCceEEeccEecCCcEEeec
Confidence 568999999999999999999999984 799999999999999997 6 999999999999999999999999999976
Q ss_pred C--CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHh
Q 015349 346 D--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 346 ~--~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~ 388 (408)
. .+.++|++. +++|++.++++|+|||+++++|++|+.+|+++
T Consensus 87 ~~~~~~~~~~~~-d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ea 130 (130)
T smart00160 87 AGSNRALKWTPE-DFADDIPKLVLYAVRFKTKEEADSFKNIFEEA 130 (130)
T ss_pred CCCcceEEEeee-ecCCCCCceEEEEEEeCCHHHHHHHHHHHHhC
Confidence 4 468888776 45667788999999999999999999999875
No 3
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=100.00 E-value=1e-32 Score=235.89 Aligned_cols=117 Identities=32% Similarity=0.635 Sum_probs=103.4
Q ss_pred ccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccC--C
Q 015349 272 VVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD--K 347 (408)
Q Consensus 272 eV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~--~ 347 (408)
+|.||||+|++||++|||||+|.. +.|++||+|+|||++++. ++++|||||+++++||||||+|+++|+++++. .
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~-~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~ 79 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKE-TGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSE 79 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-SCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccC-CcceEEEEEEcccCceeEEEEecCCceecccccCC
Confidence 588999999999999999999984 699999999999999997 79999999999999999999999999998764 5
Q ss_pred cceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhh
Q 015349 348 KGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKD 390 (408)
Q Consensus 348 ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~ 390 (408)
+.++|++.+ +.++.+++.+|+|||++++.|++|+++|++++.
T Consensus 80 ~~~~~~~~~-~~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~~ 121 (122)
T PF00638_consen 80 KSLVWTAID-YADEEGKPETYLIRFKSAEDADEFKKKIEEAKE 121 (122)
T ss_dssp TEEEEEEEE-CTTSSSEEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEecc-ccCCCCceEEEEEEECCHHHHHHHHHHHHHHhc
Confidence 789998864 456667899999999999999999999999985
No 4
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.2e-29 Score=232.42 Aligned_cols=129 Identities=29% Similarity=0.513 Sum_probs=122.7
Q ss_pred cccccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEeccccccccccccc-
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM- 345 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~- 345 (408)
+.|+++|-||+|.+||.+|||||+|+. +.|+|||.|.++|++|+. +++.||+||||+++|||+||.|.|.|++++.
T Consensus 78 ~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkk-tnk~ri~MrRDktlklcaNH~i~Pe~kl~Pnv 156 (211)
T COG5171 78 QRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKK-TNKARITMRRDKTLKLCANHFINPEFKLQPNV 156 (211)
T ss_pred HhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccc-cCceEEEEeechhhhhhhhhccCcceeccCCC
Confidence 467889999999999999999999985 799999999999999998 9999999999999999999999999999986
Q ss_pred -CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhcccccCC
Q 015349 346 -DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAVLKT 398 (408)
Q Consensus 346 -~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~~~l~t 398 (408)
.+++|+|+|..+..+|+.+.++|+|||-+.+.++.|...|+.++.+|+..|+|
T Consensus 157 gsdrsWvw~~taD~~Egea~a~tFairF~s~Ena~~FkEefek~qe~N~Kalk~ 210 (211)
T COG5171 157 GSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFKEEFEKGQEHNEKALKT 210 (211)
T ss_pred CcccceEEEeecccccCcceeeEEEEeeccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999999999999999999999999999999988886
No 5
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.9e-19 Score=180.63 Aligned_cols=108 Identities=20% Similarity=0.393 Sum_probs=98.3
Q ss_pred ccceeEEEEeeeEEeecCCCceecceeEEEEEeecCCCCceEEEEEec-CceeEEecccccccccccccCCcceEEEeec
Q 015349 278 ENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRAR-GNYRLILNASLYPDMKLTNMDKKGITFACIN 356 (408)
Q Consensus 278 EdEe~VFs~RaKLY~f~~~~WKERGvG~LKInk~k~dt~k~RIVMR~D-gt~KVlLN~~I~~~Mkv~~~~~ksV~ftavn 356 (408)
-+++.+|+.|||+|++.+++|.+||||+|||....+ .+..||+|.+ ++|+||||..|+++|+++++++++|.+.|+.
T Consensus 378 ~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~--~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcvp 455 (487)
T KOG2724|consen 378 QEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDR--GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCVP 455 (487)
T ss_pred cCccchhccccceEEEecccccccccceeecccccc--cceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEeC
Confidence 466899999999999999999999999999999874 7999999998 5678999999999999999999999999996
Q ss_pred cCCCCCccceEEEEEeCCHHHHHHHHHHHHHhh
Q 015349 357 SATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 389 (408)
Q Consensus 357 d~sEge~k~~tylLRfKsaE~AdeF~~aIee~K 389 (408)
... ...+.+||||||+++.|++|.++|.+++
T Consensus 456 ~~e--~t~p~TmLIRvktad~aD~L~~kI~E~a 486 (487)
T KOG2724|consen 456 PSE--STEPATMLIRVKTADGADKLTDKILEVA 486 (487)
T ss_pred Ccc--cccceeEEEEecccchHHHHHHHHHhhc
Confidence 332 2569999999999999999999999985
No 6
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.3e-17 Score=157.95 Aligned_cols=124 Identities=27% Similarity=0.474 Sum_probs=110.1
Q ss_pred cccccccCCccceeEEEEee-eEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCc-eeEEecccccccccccc
Q 015349 269 QEVVVETGEENEKVVFSADS-VLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTN 344 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~Ra-KLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt-~KVlLN~~I~~~Mkv~~ 344 (408)
..|.|.|+++.|.+||..|+ +||+|.. .+|++||.|.++|++|+. ++..|+|||++++ ++||+||+|++.|++++
T Consensus 45 ~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~-~g~~r~~m~rdst~~~v~sn~~~~~~~~~~p 123 (215)
T KOG0864|consen 45 EKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKD-TGSTRDLMRRDSTKLKVCSNHFIGPSFKLEP 123 (215)
T ss_pred cchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCC-CCcceeeeeecccchhhcccccccCcccccC
Confidence 35789999999999999996 9999986 799999999999999997 9999999999999 89999999999999998
Q ss_pred c--CCcceEEEeeccCCCCCccceEEEEEeCCHHH-HHHHHHHHHHhhhhcc
Q 015349 345 M--DKKGITFACINSATEGKSGLSTFALKFRDASI-VEEFQTAVAAHKDKTT 393 (408)
Q Consensus 345 ~--~~ksV~ftavnd~sEge~k~~tylLRfKsaE~-AdeF~~aIee~K~~~~ 393 (408)
+ ..++++|.+..+.+++.++..+|+|||.+.+. ...|...|+.++...+
T Consensus 124 ~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~s~~~f~~~~e~~~~~~~ 175 (215)
T KOG0864|consen 124 PAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVESSGKAFKEKIEEAKEGIE 175 (215)
T ss_pred CcccCcchhhhhhhhhcccccchhHHHHHhhhhcccchhhHhhhhhhhhhhh
Confidence 6 35668886666777788889999999999888 8889999988886444
No 7
>PF08911 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR015007 This entry represents a domain found in Nup2, 50 and 61, which are components of the nuclear pore complex. Nucleoporin 50 kDa (NUP50) acts as a cofactor for the importin-alpha:importin-beta heterodimer, which in turn allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. The C terminus of NUP50 binds importin-beta through RAN-GTP, the N terminus binds the C terminus of importin-alpha, while a central domain binds importin-beta. NUP50:importin-alpha:importin-beta then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to actively displace nuclear localisation signals from importin-alpha []. NUP2 encodes a non-essential nuclear pore protein that has a central domain similar to those of Nsp1 and Nup1[, ]. Transport of macromolecules between the nucleus and the cytoplasm of eukaryotic cells occurs through the nuclear pore complex (NPC), a large macromolecular complex that spans the nuclear envelope [, , ]. The structure of the vertebrate NPC has been studied extensively; recent reviews include [, , , ]. The yeast NPC shares several features with the vertebrate NPC, despite being smaller and less elaborate [, ]. Many yeast nuclear pore proteins, or nucleoporins, have been identified by a variety of genetic approaches [, , , ]. nup2 mutants show genetic interactions with nsp1 and nup1 conditional alleles [, ]. Nup1 interacts with the nuclear import factor Srp1 [] and with the small GTPase Ran (encoded by GSP1) [].; GO: 0005643 nuclear pore; PDB: 3TJ3_D 1UN0_D 2C1T_D 2C1M_B.
Probab=99.63 E-value=7.1e-17 Score=129.56 Aligned_cols=64 Identities=45% Similarity=0.669 Sum_probs=18.7
Q ss_pred cccccccccccCCCCCCCcccchhhccccchhchHHHHhccceeeeccCC--------CCCCCCCCCCcceeecCC
Q 015349 12 KKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQ--------TASTPSSNPFAGIRLVPS 79 (408)
Q Consensus 12 ~kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~~--------~~~~~~~npf~~~~~~~~ 79 (408)
.||+|+.||||||+.. | |+ +.++|+|++||++||++|+|+|+||.. +++.+..|||+++.+.|+
T Consensus 1 aKR~A~~qlt~dn~d~--e-d~-~~e~g~f~~AS~evL~~RkI~k~krr~~~~~~~~~~~~~~~~~~F~g~~~~~~ 72 (72)
T PF08911_consen 1 AKRGADSQLTRDNWDE--E-DE-DEEAGTFKRASEEVLAKRKIKKPKRRRAAGASSSASSSSSAFSGFAGFKSPPS 72 (72)
T ss_dssp -----SS---TTTSSS---------------B--HHHHHCS-S-SB--TTT-------------------------
T ss_pred CcccccccccccCccc--c-cc-cccCCCcccCCHHHhhcceeccccccccccccCCCCCcCcccCCCcCCCcCCC
Confidence 4999999999999932 3 33 678999999999999999999997765 222245899999998874
No 8
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.22 E-value=1.8e-10 Score=97.65 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=88.3
Q ss_pred ceeEEEEeeeEEeecC--CCceec--ceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceEEEee
Q 015349 280 EKVVFSADSVLFEFLD--GSWKER--GKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 355 (408)
Q Consensus 280 Ee~VFs~RaKLY~f~~--~~WKER--GvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftav 355 (408)
+.+|+.++|.||.+++ +.|..+ |+|.|.|.++.. .+.+||+||+-+..+|++|+.|+++|.+....+....|...
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~-~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~ 79 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDST-RNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDD 79 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECC-CCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcC
Confidence 4689999999999976 899999 999999999986 78899999999999999999999999999876666666653
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHh
Q 015349 356 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 356 nd~sEge~k~~tylLRfKsaE~AdeF~~aIee~ 388 (408)
-..|-|.|.+.++|+.|.+.|.++
T Consensus 80 ---------~~~~GL~F~se~eA~~F~~~v~~~ 103 (104)
T cd00837 80 ---------NCVYGLNFASEEEAAQFRKKVLEA 103 (104)
T ss_pred ---------CcEEEEeeCCHHHHHHHHHHHHhc
Confidence 247999999999999999999875
No 9
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=5.1e-12 Score=125.68 Aligned_cols=116 Identities=28% Similarity=0.513 Sum_probs=98.9
Q ss_pred cccccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCC---CCceEEEEEecCceeEEeccccccccccc
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNA---TGRARLLMRARGNYRLILNASLYPDMKLT 343 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~d---t~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~ 343 (408)
..||+.+|||+|-++|...||||.|++ ..|.+||.|.||++..... +...|||||..+++||+||..||..|.++
T Consensus 145 ~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~~e 224 (327)
T KOG0866|consen 145 SAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQIE 224 (327)
T ss_pred eeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHHHh
Confidence 579999999999999999999999987 4899999999999998851 24599999999999999999999999999
Q ss_pred ccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHh
Q 015349 344 NMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 344 ~~~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~ 388 (408)
+.+.++|++.++.. ++. ....|+|+++.. ..+.+++.+-.+
T Consensus 225 k~sq~~ir~~a~~~--e~~-~v~vFl~~~~~~-rtd~i~~s~~~~ 265 (327)
T KOG0866|consen 225 KASQKSIRITAMDT--EGQ-GVKVFLISASSK-RTDQIYKSLSHR 265 (327)
T ss_pred hhcccceeeccccc--cCC-cceEEEeecccc-chhhhhhhhhhh
Confidence 99999999999842 332 678999999854 456666655544
No 10
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=98.74 E-value=2.2e-07 Score=79.42 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=87.1
Q ss_pred ceeEEEEeeeEEeecC--C-Ccee-cceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceEEEee
Q 015349 280 EKVVFSADSVLFEFLD--G-SWKE-RGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 355 (408)
Q Consensus 280 Ee~VFs~RaKLY~f~~--~-~WKE-RGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftav 355 (408)
..+|+.++|.||..+. + .|.- .+.|.|.|.++.. ...+||+++.-..+++++|+.|+++|.+....+....|...
T Consensus 8 ~~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~-~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~ 86 (111)
T PF00568_consen 8 CQSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNS-RRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDD 86 (111)
T ss_dssp EEEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEET
T ss_pred ceEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECC-CCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeC
Confidence 3789999999999963 4 5999 9999999999986 78899999997799999999999999999877777777742
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhh
Q 015349 356 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 389 (408)
Q Consensus 356 nd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K 389 (408)
-.+|-|.|.+.++|..|...|++.|
T Consensus 87 ---------~~~~GLnF~se~eA~~F~~~v~~~~ 111 (111)
T PF00568_consen 87 ---------DCVYGLNFASEEEADQFYKKVQEAK 111 (111)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ---------CeEEEEecCCHHHHHHHHHHHhccC
Confidence 1389999999999999999999875
No 11
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.55 E-value=9.3e-07 Score=76.97 Aligned_cols=102 Identities=14% Similarity=0.260 Sum_probs=87.9
Q ss_pred ceeEEEEeeeEEeecC--CCceeccee-----EEEEEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceEE
Q 015349 280 EKVVFSADSVLFEFLD--GSWKERGKG-----ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITF 352 (408)
Q Consensus 280 Ee~VFs~RaKLY~f~~--~~WKERGvG-----~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~f 352 (408)
|..||.+||..|.+++ +.|.-.|-| .+.|..+.. .+-+|||=|+-.-.++|+|..|+++|++.........|
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~-~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w 79 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPR-NNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQW 79 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCC-CCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceee
Confidence 5679999999999986 679987775 788888875 78999999998789999999999999999876777776
Q ss_pred EeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 353 ACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 353 tavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
... -++|=|-|.++++|..|...|+.+...
T Consensus 80 ~~~---------~~v~GLnF~Se~eA~~F~~~v~~Al~~ 109 (111)
T cd01207 80 RDA---------RQVYGLNFGSKEDATMFASAMLSALEV 109 (111)
T ss_pred ecC---------CeEEeeccCCHHHHHHHHHHHHHHHHh
Confidence 632 278999999999999999999988754
No 12
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.28 E-value=5.2e-06 Score=72.24 Aligned_cols=103 Identities=17% Similarity=0.297 Sum_probs=84.6
Q ss_pred cceeEEEEeeeEEeecC---CCceeccee--EEEEEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceEEE
Q 015349 279 NEKVVFSADSVLFEFLD---GSWKERGKG--ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFA 353 (408)
Q Consensus 279 dEe~VFs~RaKLY~f~~---~~WKERGvG--~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ft 353 (408)
.|..||+.|+..|.|++ +.|.--|-+ .++|..+.. ..-+|||-|.+ .++|||..|.++|++.....+.-.|.
T Consensus 2 ~E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~-~ntfRIi~~~~--~~~iINc~i~~~~~y~kas~~FhQWr 78 (111)
T cd01206 2 GEQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDST-RNVYRIISVGG--TKAIINSTITPNMTFTKTSQKFGQWA 78 (111)
T ss_pred CccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCC-CcEEEEEEecC--cEEEEeccccCCcceeeccccccccc
Confidence 37889999999999986 389888876 455666665 78999999876 49999999999999999877766665
Q ss_pred eeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 354 CINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 354 avnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
-. -.-+.|=|-|.+.++++.|...|++.+..
T Consensus 79 D~-------R~~tVyGLnF~Sk~ea~~F~~~f~~~~~~ 109 (111)
T cd01206 79 DS-------RANTVYGLGFSSEQQLTKFAEKFQEVKEA 109 (111)
T ss_pred cc-------ccceeeecccCCHHHHHHHHHHHHHHHHh
Confidence 21 11278999999999999999999998864
No 13
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=97.62 E-value=0.00091 Score=57.20 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=76.1
Q ss_pred ceeEEEEeeeEEeec--CCCceeccee-EEEEEeecC-CCCceEEEEEecCceeEEecccccccccccccCCcceEEEee
Q 015349 280 EKVVFSADSVLFEFL--DGSWKERGKG-ELKVNVSTN-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 355 (408)
Q Consensus 280 Ee~VFs~RaKLY~f~--~~~WKERGvG-~LKInk~k~-dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftav 355 (408)
+..++..++..+.|+ .+.|.-.|.| .+.|.+... .+.-+||+-+..+. +|++|+.|+++|.+....+..-.|..-
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~~~~Fh~f~~~ 81 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQATPTFHQWADD 81 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeecCCceEEEEeC
Confidence 345666666555554 4789999999 777777542 25678998888655 999999999999999876666665531
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHh
Q 015349 356 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 356 nd~sEge~k~~tylLRfKsaE~AdeF~~aIee~ 388 (408)
-..|-|-|.+.++|..|.+.|.++
T Consensus 82 ---------~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 82 ---------KCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred ---------CeEEEeecCCHHHHHHHHHHHHhc
Confidence 257999999999999999999875
No 14
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=95.19 E-value=0.58 Score=40.76 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=72.9
Q ss_pred eeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCc--eEEEEEecCceeEEecccccccccccccCCcceEEEeec
Q 015349 281 KVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGR--ARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACIN 356 (408)
Q Consensus 281 e~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k--~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftavn 356 (408)
.+|...=+.||.-.. +.|.-...|.|-+-+... .+. .||+=.. .++|+..+-|+.+|.++..-+...+|..
T Consensus 5 ~il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~-~~sy~lrl~D~~--~~~v~weqElY~~f~y~~~r~fFhtFe~-- 79 (105)
T cd01205 5 KILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNV-QKSYFIRLFDIK--ANRIIWEQELYDNFEYQQPRPFFHTFEG-- 79 (105)
T ss_pred eEEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECC-CCEEEEEEEEcc--CCcEEEEEEcccCcEEccCCCcEEEEec--
Confidence 356667789999864 899999999999998864 333 3444443 4899999999999999875333333332
Q ss_pred cCCCCCccceEEEEEeCCHHHHHHHHHHHHHh
Q 015349 357 SATEGKSGLSTFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 357 d~sEge~k~~tylLRfKsaE~AdeF~~aIee~ 388 (408)
| -.++-|.|-+.++|..|++.|++.
T Consensus 80 ---d----~c~~GL~Fade~EA~~F~k~v~~~ 104 (105)
T cd01205 80 ---D----DCVVGLNFADETEAAEFRKKVLDK 104 (105)
T ss_pred ---c----CcEEEEEECCHHHHHHHHHHHHhc
Confidence 2 367889999999999999999864
No 15
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.50 E-value=0.49 Score=53.54 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=75.3
Q ss_pred eeEEEEeeeEEeecC--CCceecceeE-EEEEeecCCCCceEEEEEecCceeEEeccccccccccccc-CCcceEEEeec
Q 015349 281 KVVFSADSVLFEFLD--GSWKERGKGE-LKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM-DKKGITFACIN 356 (408)
Q Consensus 281 e~VFs~RaKLY~f~~--~~WKERGvG~-LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~-~~ksV~ftavn 356 (408)
..++...|+||.|+. +.|.-..-.. ++|... ++.-..++..+..+.+|++.|.+.|.+.-. .-.+.+|....
T Consensus 248 ~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~----~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~e~lSFiFN~~~ 323 (794)
T PF08553_consen 248 EILASESAELYLYDPPTGKFVLQDSSVTAKIIET----GKWEYWLQIEGKDKIWLGQPVSSDMNPVFNFEHLSFIFNYYT 323 (794)
T ss_pred ceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEc----CCeEEEEEEecCCceEEeeeccCCcCeEEEcceeEEEEEeEc
Confidence 399999999999974 7888776332 455443 345555666666788999999999998754 23466666653
Q ss_pred cCCCCCccceEEEEEeCCHHHHHHHHHHHHHhh
Q 015349 357 SATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 389 (408)
Q Consensus 357 d~sEge~k~~tylLRfKsaE~AdeF~~aIee~K 389 (408)
. + +...+|||||++.+....|...+..|.
T Consensus 324 ~--~--~~~~sw~lkF~~~~~~~~F~~~~~~~l 352 (794)
T PF08553_consen 324 E--D--GSAYSWLLKFKDQEDYERFQEKFMKCL 352 (794)
T ss_pred C--C--CceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 2 2 257899999999999999999998885
No 16
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=92.18 E-value=0.23 Score=52.21 Aligned_cols=88 Identities=14% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCceecc-----eeEEEEEeecCCCCceEEEEEecCc-eeEEecccccccccccccCCcceEEEeeccCCCCCccceEEE
Q 015349 296 GSWKERG-----KGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFA 369 (408)
Q Consensus 296 ~~WKERG-----vG~LKInk~k~dt~k~RIVMR~Dgt-~KVlLN~~I~~~Mkv~~~~~ksV~ftavnd~sEge~k~~tyl 369 (408)
+.|.-.| .-.++|..|.. ..-+|||-|.-+. .-|+||..|.++++|.......-.|-.- -..|-
T Consensus 8 k~W~p~g~g~~~~s~V~~~~h~~-~n~frVvg~k~qdd~~vVlnC~I~kGlkYnkatptFHqWR~a---------rqvyG 77 (409)
T KOG4590|consen 8 KGWLPAGGGGAALSKVRIYHHTS-GNTFRVVGRKSQDDQQVVLNCLILKGLKYNKATPTFHQWRDA---------RQVYG 77 (409)
T ss_pred cccccccccCcccceeEEEeecc-CCceeEEeeecccCcccccccccccCcceeecccchhhhhhh---------hhhhc
Confidence 5566655 44567777776 7899999999887 8899999999999999875554444321 36799
Q ss_pred EEeCCHHHHHHHHHHHHHhhhhcc
Q 015349 370 LKFRDASIVEEFQTAVAAHKDKTT 393 (408)
Q Consensus 370 LRfKsaE~AdeF~~aIee~K~~~~ 393 (408)
|.|.+.++|..|...+-.+.+...
T Consensus 78 LnFqs~~DA~~Fa~~~~~A~e~l~ 101 (409)
T KOG4590|consen 78 LTFQSEQDARAFARGVPVAIEALS 101 (409)
T ss_pred ccccChhhhhhhhhhhhhhhhhhc
Confidence 999999999999988877776554
No 17
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=89.84 E-value=0.58 Score=50.42 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=65.4
Q ss_pred eEEeecCC--Cceecce-eEEEEEeecCC-CCceEEEEEecCceeEEecccccccccccccCCcceEEEeeccCCCCCcc
Q 015349 289 VLFEFLDG--SWKERGK-GELKVNVSTNA-TGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSG 364 (408)
Q Consensus 289 KLY~f~~~--~WKERGv-G~LKInk~k~d-t~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftavnd~sEge~k 364 (408)
+||+-..+ .|.-+|. |-|-|-+.... +.-.|||--.+ +|||--+-||.+|.|..- + --|.+|. ++
T Consensus 46 qLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q~--r-~ffhtFe----gd-- 114 (569)
T KOG3671|consen 46 QLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQP--R-TFFHTFE----GD-- 114 (569)
T ss_pred HHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceeccC--c-cceeeec----cc--
Confidence 56766543 8999999 99999887631 23345554443 569999999999999862 3 3344442 11
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 365 LSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 365 ~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
-++.-|.|-+.++|+.|++.|++....
T Consensus 115 dc~aGLnF~~E~EA~~F~k~V~~r~~~ 141 (569)
T KOG3671|consen 115 DCQAGLNFASEEEAQKFRKKVQDRICH 141 (569)
T ss_pred cceeeecccCHHHHHHHHHHHHHHhhh
Confidence 246778899999999999999876543
No 18
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=84.54 E-value=23 Score=31.35 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=63.1
Q ss_pred EEeeeEEeec--CCCceecce-eEEEEEeecCCCCceEEEEEe-cCceeEEecccccccccccccCCcceEEEeeccCCC
Q 015349 285 SADSVLFEFL--DGSWKERGK-GELKVNVSTNATGRARLLMRA-RGNYRLILNASLYPDMKLTNMDKKGITFACINSATE 360 (408)
Q Consensus 285 s~RaKLY~f~--~~~WKERGv-G~LKInk~k~dt~k~RIVMR~-Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftavnd~sE 360 (408)
...|-||.|+ .++|...|+ |.|.|-+... .-+++|++=+ .+..-+++. |.+.|.++.. +..++|-. .
T Consensus 26 a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~-~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~-~~~l~~r~----~- 96 (122)
T PF06058_consen 26 ASHVVVYKFDHETNEWEKTDIEGTLFVYKRSS-SPRYGLIVLNRRSTENFVEP--ITPDLDFELQ-DPYLIYRN----D- 96 (122)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEEEEET-TS-ECEEEEESSSS--EEEE--E-SGGGEEEE-TTEEEEEE----T-
T ss_pred CCeEEEEeecCCCCcEeecCcEeeEEEEEeec-ccceEEEEecCCCCCceeee--cCCCcEEEEe-CCEEEEEc----C-
Confidence 3468999997 479999987 8898887654 4556655444 344445554 7788888865 45555552 1
Q ss_pred CCccceEEEEEeCCHHHHHHHHHHHHHh
Q 015349 361 GKSGLSTFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 361 ge~k~~tylLRfKsaE~AdeF~~aIee~ 388 (408)
.-..|-|=|-+.++++++++.|+..
T Consensus 97 ---~~~I~GiWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 97 ---NQEIYGIWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp ---TTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ---CceEEEEEEEeHHHHHHHHHHHHhc
Confidence 1368999999999999999988763
No 19
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.90 E-value=1 Score=47.82 Aligned_cols=48 Identities=42% Similarity=0.418 Sum_probs=39.0
Q ss_pred ccccccccccccCCCCCCCcccchhhccccchhchHHHHhccceeeeccCCC
Q 015349 11 SKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQT 62 (408)
Q Consensus 11 s~kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~~~ 62 (408)
+-||.|...|+--+..+ ++ +-++-|+|.-|.+|+|.+|.|+|.+|+..
T Consensus 2 ~~krmA~s~l~~~nwdl--E~--Efle~gnf~~aeee~lktr~ikka~r~~v 49 (487)
T KOG2724|consen 2 SEKRMAMSRLRDKNWDL--EA--EFLEVGNFYFAEEEHLKTRGIKKAYRDHV 49 (487)
T ss_pred hhhhhhhhhhhhcccch--hh--hHHHhccccccchhhhcchhhhhHHhhhh
Confidence 56899998888777666 22 34779999999999999999999977633
No 20
>PF11531 CARM1: Coactivator-associated arginine methyltransferase 1 N terminal; InterPro: IPR020989 Histone-arginine methyltransferase CARM1 (also known as coactivator-associated arginine methyltransferase 1) methylates arginine residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability []. CARM1 is recruited by several transcription factors and plays a critical role in gene expression as a positive regulator. This entry represents the N-terminal domain of CARM1. Structurally this domain adopts a PH domain-like fold, a common structural scaffold found in a broad range proteins with diverse activities, which is frequently found to regulate protein-protein interactions []. ; GO: 0009405 pathogenesis; PDB: 2OQB_B 2Y1W_C 2Y1X_D.
Probab=56.86 E-value=54 Score=29.31 Aligned_cols=57 Identities=7% Similarity=0.198 Sum_probs=41.5
Q ss_pred ceeEEecccccccccccccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhc
Q 015349 327 NYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 392 (408)
Q Consensus 327 t~KVlLN~~I~~~Mkv~~~~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~ 392 (408)
..-+++-..|.+...+.+.++.+.+++.- -.+.||+|.+..+...|+..|+.++..+
T Consensus 50 ~~~cvfkc~VsreTEccRVG~~SfliTlg---------~nSlLl~F~s~~df~~F~n~lk~cr~~~ 106 (114)
T PF11531_consen 50 ECVCVFKCTVSRETECCRVGKQSFLITLG---------CNSLLLQFASPADFSSFHNILKRCRNQK 106 (114)
T ss_dssp T--EEEEEEEETTSEEEEETTTEEEEEET---------TEEEEEE-SSHHHHHHHHHHHCCCTT--
T ss_pred CCEEEEEEEEcCCcceeEecceEEEEEec---------CCeEEEEecCHHHHHHHHHHHHHHhCCC
Confidence 44466677777888888887777777762 2579999999999999999888777543
No 21
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.58 E-value=4.6 Score=41.56 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=49.3
Q ss_pred ceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEec
Q 015349 280 EKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILN 333 (408)
Q Consensus 280 Ee~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN 333 (408)
..-||-.+++.|+++. +.+..|||+.|+++..+. ..+.|++.|-++.+.|++|
T Consensus 242 ~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~~~r~-~~kak~~~~~e~s~~~l~~ 296 (327)
T KOG0866|consen 242 GVKVFLISASSKRTDQIYKSLSHRSIAALKSRVERE-CLKAKMPAPEEGSAPLLKE 296 (327)
T ss_pred cceEEEeeccccchhhhhhhhhhhhhhhhhcccchh-hhhcccCCCcccccccccc
Confidence 7899999999999974 799999999999999986 6799999999999999998
No 22
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=52.08 E-value=58 Score=30.56 Aligned_cols=107 Identities=13% Similarity=0.220 Sum_probs=57.8
Q ss_pred ceeEEEEe-eeEEeecC---------CCce---ecceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccC
Q 015349 280 EKVVFSAD-SVLFEFLD---------GSWK---ERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD 346 (408)
Q Consensus 280 Ee~VFs~R-aKLY~f~~---------~~WK---ERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~ 346 (408)
|.+||.++ |.+|+.-. ..|. ..=.|-|||....+ ..+.+|++-...+|.|.+.+++.....|++.-
T Consensus 3 e~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~-~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~ 81 (160)
T PF07933_consen 3 ERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGD-KCKVDIRLEDPSTGELFAQCPYDDYAAVEPVI 81 (160)
T ss_dssp S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SS-SE--EEEEE-SS--SS-EEEEE-SS--EEE-T
T ss_pred eEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCC-eeEEEEEecCCCCcceEEECcccCCCceEEee
Confidence 45666654 67887652 2564 33468899997654 33447777777899999999999887676653
Q ss_pred --CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 347 --KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 347 --~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
.|...+-..+. .+.-.-.=|=|..-.+|=+|.-+|++|...
T Consensus 82 DSSRYFvlRv~d~----~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~ 124 (160)
T PF07933_consen 82 DSSRYFVLRVQDP----SGRHAFIGIGFRERSDAFDFNVALQDHRKY 124 (160)
T ss_dssp T--S-EEEEEEET----TTEEEEEEEE-S-HHHHHHHHHHHHHHHS-
T ss_pred cccceEEEEEEcC----CCcEEEEEEeeccccccccHHHHHHHHHHH
Confidence 45555555432 234555668899999999999999999853
No 23
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=42.92 E-value=1.9e+02 Score=32.45 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=71.2
Q ss_pred eeEEEEeeeEEeecCC--CceecceeEEEEEeecCCCCceEEEEEecCceeEEeccccccccccccc-CCcceEEEeecc
Q 015349 281 KVVFSADSVLFEFLDG--SWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM-DKKGITFACINS 357 (408)
Q Consensus 281 e~VFs~RaKLY~f~~~--~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~-~~ksV~ftavnd 357 (408)
+.++..-+-||+|+.- .+-.. --.+++-.- +.+++-..+|-.+--+++|-..|.+.|.+.-. ..-..+|..+.
T Consensus 229 e~~~~~~~~l~~yd~~~e~Filq-~p~Vkv~i~--d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~~tFvwny~~- 304 (776)
T COG5167 229 ETLYSKNGVLSRYDTATERFILQ-KPHVKVVIV--DDGKEVFWIRIETRDDVILFEEVRTETNPYFDQKNTTFVWNYME- 304 (776)
T ss_pred ceeeeecceEEeecchhheeeec-CCceEEEEE--ecCCeEEEEEEecccceeehheeccccCcceecccceeeeeeec-
Confidence 4889999999999752 11111 012222222 36888899999988889999999999988753 22355565553
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHHHHhh
Q 015349 358 ATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 389 (408)
Q Consensus 358 ~sEge~k~~tylLRfKsaE~AdeF~~aIee~K 389 (408)
+ ...-+|+|||.+.....+|..++-.|.
T Consensus 305 --~--n~~~s~~LrF~d~~~~~qF~~~~i~cL 332 (776)
T COG5167 305 --D--NVFHSFSLRFLDNLDFLQFLSKYIGCL 332 (776)
T ss_pred --c--cchheeeeeecchhHHHHHHHHHHHHH
Confidence 2 246789999999999999998887776
No 24
>PF15411 PH_10: Pleckstrin homology domain
Probab=39.85 E-value=58 Score=28.64 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=18.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHH
Q 015349 364 GLSTFALKFRDASIVEEFQTAV 385 (408)
Q Consensus 364 k~~tylLRfKsaE~AdeF~~aI 385 (408)
.+..|.|||++.+..+....+|
T Consensus 95 e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 95 ELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCceEEEEeCCHHHHHHHHhhC
Confidence 4789999999999988877654
No 25
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=37.22 E-value=42 Score=29.39 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCccceEEEEEeCCHHHHHHHHHHHHHhh
Q 015349 361 GKSGLSTFALKFRDASIVEEFQTAVAAHK 389 (408)
Q Consensus 361 ge~k~~tylLRfKsaE~AdeF~~aIee~K 389 (408)
+.+..-..||||++...|++|+..++-..
T Consensus 50 ~~pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 50 GTPNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred CCCceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 33445677899999999999999987544
No 26
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=27.58 E-value=2.5e+02 Score=20.68 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=21.3
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHh
Q 015349 365 LSTFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 365 ~~tylLRfKsaE~AdeF~~aIee~ 388 (408)
...|.|++.+.+++..++.+|..+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 578999999999999999998753
No 27
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=26.70 E-value=2.8e+02 Score=21.38 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.3
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHh
Q 015349 366 STFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 366 ~tylLRfKsaE~AdeF~~aIee~ 388 (408)
.+|.|+..+.+++.+.+.+|..+
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 58999999999999999998753
No 28
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.33 E-value=4.7e+02 Score=22.48 Aligned_cols=23 Identities=4% Similarity=-0.018 Sum_probs=20.5
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHh
Q 015349 366 STFALKFRDASIVEEFQTAVAAH 388 (408)
Q Consensus 366 ~tylLRfKsaE~AdeF~~aIee~ 388 (408)
.+|.|...+.+++++.+.+|..+
T Consensus 81 R~f~l~Aete~E~~~Wi~~l~~~ 103 (104)
T cd01236 81 KEHFIKAETKEEISWWLNMLMVY 103 (104)
T ss_pred ceEEEEeCCHHHHHHHHHHHHhc
Confidence 68999999999999999998753
No 29
>PF14109 GldH_lipo: GldH lipoprotein
Probab=22.23 E-value=1.9e+02 Score=25.71 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=30.9
Q ss_pred eEEEEeeeEEeecCCCceecceeEEEEEeecCCCCceEEEEEecCceeEEecccc
Q 015349 282 VVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASL 336 (408)
Q Consensus 282 ~VFs~RaKLY~f~~~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I 336 (408)
..=...|+|.. .+|.|...|+|.|+=.+-. -+..+.+.+.+++++.+-|..
T Consensus 66 ~~dtl~~~Lad-~~G~w~G~G~~~~~e~~~~---~~~~~~f~~~G~Y~~~i~q~M 116 (131)
T PF14109_consen 66 VTDTLECELAD-PDGKWLGKGIGDLYEYKLP---YKENVRFPRKGSYTFTIEQAM 116 (131)
T ss_pred EeeeEEEEEEC-CCCcEeeeeEeEeEEEEEE---eecceecCCCCcEEEEEEecc
Confidence 44455677776 5799999999975544432 123344445556665555543
Done!