Query 015349
Match_columns 408
No_of_seqs 158 out of 640
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xke_A RAN-binding protein 2; 100.0 4.1E-37 1.4E-41 268.2 16.1 124 275-400 2-130 (130)
2 4hat_B RAN-specific GTPase-act 100.0 3.5E-37 1.2E-41 272.8 14.8 124 269-393 11-138 (140)
3 3m1i_B RAN-specific GTPase-act 100.0 6.9E-36 2.3E-40 276.6 15.3 124 269-393 62-189 (191)
4 1rrp_B Nuclear pore complex pr 100.0 2.1E-35 7E-40 258.5 15.7 120 269-390 10-133 (134)
5 1k5d_B RAN-specific GTPase-act 100.0 4.8E-35 1.7E-39 272.8 15.0 125 269-394 34-164 (201)
6 2ec1_A Nucleoporin 50 kDa; ran 100.0 2.8E-34 9.6E-39 249.4 13.1 116 273-390 5-124 (125)
7 3n7c_A ABR034WP; nuclear pore 100.0 1.9E-34 6.3E-39 252.3 11.2 118 271-393 1-123 (130)
8 2y8g_A Ranbp3-B, RAN-binding p 100.0 1.1E-33 3.8E-38 249.3 12.1 120 269-391 3-127 (138)
9 2crf_A RAN binding protein 3; 100.0 4.5E-33 1.5E-37 248.6 16.1 121 269-392 15-140 (150)
10 2c1m_B Nucleoporin 50 kDa; pro 99.5 7E-15 2.4E-19 108.1 2.9 44 13-60 3-46 (46)
11 1qc6_A EVH1 domain from ENA/VA 99.5 3.3E-13 1.1E-17 117.4 12.4 105 279-393 2-113 (130)
12 1un0_C Nucleoporin NUP2; nucle 99.4 6.8E-14 2.3E-18 104.9 2.3 47 13-62 3-49 (51)
13 3tj3_C Nuclear pore complex pr 99.3 2.1E-13 7.2E-18 116.7 2.8 60 12-75 7-67 (114)
14 1ddw_A GLGF-domain protein hom 99.1 8.1E-10 2.8E-14 95.5 13.9 105 279-393 2-111 (120)
15 1i2h_A PSD-ZIP45(homer-1C/VESL 99.0 2.2E-09 7.7E-14 97.8 12.5 103 279-391 7-114 (168)
16 1evh_A WH1 domain, protein (ME 98.9 3E-08 1E-12 84.4 12.8 103 279-391 2-110 (112)
17 1egx_A VAsp, vasodilator-stimu 98.8 2.5E-08 8.6E-13 85.4 12.0 102 280-391 3-112 (115)
18 1xod_A Spred1; sprouty, EVH1, 98.6 2.3E-07 7.8E-12 79.8 10.8 104 279-391 2-114 (118)
19 2jp2_A Spred-2, sprouty-relate 98.6 5E-07 1.7E-11 78.6 11.7 105 278-391 10-123 (126)
20 3syx_A Sprouty-related, EVH1 d 97.9 0.00016 5.4E-09 63.5 12.6 104 282-394 12-124 (130)
21 1mke_A WIP - N-WAsp, fusion pr 97.1 0.0056 1.9E-07 54.9 11.9 99 281-391 41-142 (152)
22 2ifs_A N-WAsp, wiskott-aldrich 97.0 0.0049 1.7E-07 56.1 11.1 99 282-392 59-160 (169)
23 2oqb_A Histone-arginine methyl 91.2 1.2 4E-05 38.5 9.2 77 304-391 32-108 (117)
24 2lyd_A Decapping protein 1; DC 79.9 29 0.001 30.1 12.8 98 281-390 30-132 (134)
25 2qkl_A DCP1 protein, SPBC3B9.2 73.0 45 0.0015 28.7 11.7 92 285-389 30-125 (127)
26 1tqz_A Necap1; endocytosis, st 66.3 20 0.00067 31.5 7.7 107 277-390 5-128 (133)
27 1f59_C NSP1P, FXFG nucleoporin 30.5 27 0.00092 22.6 1.9 12 218-229 4-15 (28)
28 2kr0_A Proteasomal ubiquitin r 26.3 3.5E+02 0.012 27.6 10.2 56 281-338 25-81 (411)
29 1pfj_A TFIIH basal transcripti 25.9 3E+02 0.01 23.2 9.2 91 279-390 5-101 (108)
30 1o6o_D Nucleoporin NSP1; nucle 20.8 49 0.0017 28.4 2.3 9 245-253 75-83 (119)
No 1
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=4.1e-37 Score=268.23 Aligned_cols=124 Identities=30% Similarity=0.514 Sum_probs=115.0
Q ss_pred cCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEeccccccccccccc--CCcce
Q 015349 275 TGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM--DKKGI 350 (408)
Q Consensus 275 TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~--~~ksV 350 (408)
||||+|++||++|||||+|++ ++|+|||+|.||||+|+. ++++|||||+++++||||||+|+++|+++++ +.+.|
T Consensus 2 tGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~-~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~ 80 (130)
T 1xke_A 2 SGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEV-NGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAW 80 (130)
T ss_dssp CSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-SSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCE
T ss_pred CCCcceEEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCC-CCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEE
Confidence 799999999999999999975 789999999999999997 8999999999999999999999999999986 46789
Q ss_pred EEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhcc-cccCCCC
Q 015349 351 TFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT-AVLKTPE 400 (408)
Q Consensus 351 ~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~-~~l~tpe 400 (408)
+|++. +++|+++++++|+|||+++++|++|+++|+++|..+. .+|+||+
T Consensus 81 ~~~~~-d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~~~~~~~~p~ 130 (130)
T 1xke_A 81 MWLAS-DFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPK 130 (130)
T ss_dssp EEEEE-ECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTTSCCCCCC
T ss_pred EEEec-ccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 99986 5667777899999999999999999999999998766 6999996
No 2
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=100.00 E-value=3.5e-37 Score=272.76 Aligned_cols=124 Identities=27% Similarity=0.511 Sum_probs=108.7
Q ss_pred cccccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEeccccccccccccc-
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM- 345 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~- 345 (408)
++|+|.||||+|++||++|||||+|+. ++|++||+|.||||+|+. ++++|||||+++++||||||+|+++|+++++
T Consensus 11 ~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~-~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~ 89 (140)
T 4hat_B 11 EKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKK-TNKVRILMRRDKTLKICANHIIAPEYTLKPNV 89 (140)
T ss_dssp --------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-TCCEEEEEECTTTCCEEEEEECCTTCCCBCCT
T ss_pred ceecccCCCcCeeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCC-CCeEEEEEEecCcceEEEEeEecCCeEEeEcC
Confidence 678999999999999999999999984 689999999999999997 8999999999999999999999999999987
Q ss_pred -CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhcc
Q 015349 346 -DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 393 (408)
Q Consensus 346 -~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~ 393 (408)
++++|+|+|..+++||++++++|+|||++++.|++|+++|+++|..+.
T Consensus 90 ~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n~ 138 (140)
T 4hat_B 90 GSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINK 138 (140)
T ss_dssp TCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhc
Confidence 357999998767788888899999999999999999999999998765
No 3
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-36 Score=276.58 Aligned_cols=124 Identities=27% Similarity=0.508 Sum_probs=115.9
Q ss_pred cccccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEeccccccccccccc-
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM- 345 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~- 345 (408)
++|+|.||||+|++||++|||||+|+. ++|++||+|.||||+|+. ++++|||||+++++||||||+|+++|+|+++
T Consensus 62 ~~vev~tGEEdEe~lf~~RaKLf~f~~~~~~WKERGvG~lkilk~ke-t~k~RllMR~d~~~kV~LN~~I~~~m~~~~~~ 140 (191)
T 3m1i_B 62 EKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKK-TNKVRILMRRDKTLKICANHIIAPEYTLKPNV 140 (191)
T ss_dssp CCCCCCCSCTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-TCCEEEEEECTTTCCEEEEEECCTTCCCBCCT
T ss_pred ccccccCCCcceeeeeEEeeEEEEEecCCCCccceeEEEEEEEEcCC-CCeEEEEEEecCcceEEEeeecCCCcEEeECC
Confidence 578999999999999999999999985 689999999999999997 8999999999999999999999999999987
Q ss_pred -CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhcc
Q 015349 346 -DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 393 (408)
Q Consensus 346 -~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~ 393 (408)
++++|+|+|..+++|+++++++|+|||++++.|++|+++|++++..+.
T Consensus 141 ~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~nk 189 (191)
T 3m1i_B 141 GSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINK 189 (191)
T ss_dssp TCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHhh
Confidence 468999999767788888899999999999999999999999998764
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=2.1e-35 Score=258.46 Aligned_cols=120 Identities=28% Similarity=0.490 Sum_probs=111.2
Q ss_pred cccccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEeccccccccccccc-
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM- 345 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~- 345 (408)
++|+|.||||+|++||++|||||+|++ ++|++||+|+||||+|+. ++++|||||+++++||||||+|+++|+++++
T Consensus 10 ~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~-~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~ 88 (134)
T 1rrp_B 10 DKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKT-SGKIRLLMRREQVLKICANHYISPDMKLTPNA 88 (134)
T ss_dssp CCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESS-SCCCEEEEECTTTCCEEECCBCCSSCCCBCST
T ss_pred ceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECC-CCeEEEEEEEcCCCcEEEEeEecCCceEeecC
Confidence 578999999999999999999999974 799999999999999997 8999999999999999999999999999986
Q ss_pred -CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhh
Q 015349 346 -DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKD 390 (408)
Q Consensus 346 -~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~ 390 (408)
+.+.|+|++++ ++|+++++++|+|||++++.|++|+++|++++.
T Consensus 89 ~s~~~~~~~~~d-~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 89 GSDRSFVWHALD-YADELPKPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp TCTTEEEEEEEE-CTTSSCEEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEccc-ccCCCCceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 36899999985 456667899999999999999999999999984
No 5
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=100.00 E-value=4.8e-35 Score=272.76 Aligned_cols=125 Identities=25% Similarity=0.396 Sum_probs=114.7
Q ss_pred cccccccCCccceeEEEEeeeEEee--c--CCCceecceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccc
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEF--L--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTN 344 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f--~--~~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~ 344 (408)
++|+|.||||+|++||++|||||+| + .++|++||+|.||||+|+. ++++|||||++++|||||||+|+++|+|++
T Consensus 34 ~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~-t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~ 112 (201)
T 1k5d_B 34 PEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKE-KGAIRLLMRRDKTLKICANHYITPMMELKP 112 (201)
T ss_dssp CCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSS-SCCEEEEEEETTTCCEEEEEECCSSCCCCB
T ss_pred ccccccCCCccceEEEEEeeeEEEecccccCCCccccceEEEEEEEcCC-CCcEEEEEEECCcceEEEeeEecCCceeee
Confidence 5778999999999999999999999 3 4789999999999999996 899999999999999999999999999998
Q ss_pred c--CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhccc
Q 015349 345 M--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTA 394 (408)
Q Consensus 345 ~--~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~~ 394 (408)
+ +.+.|+|+++.++.|+..++++|+|||++++.|++|+.+|++++..+..
T Consensus 113 ~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~~~ 164 (201)
T 1k5d_B 113 NAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEE 164 (201)
T ss_dssp CSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 6 3678999886677777788999999999999999999999999987653
No 6
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=249.36 Aligned_cols=116 Identities=23% Similarity=0.405 Sum_probs=101.0
Q ss_pred cccCCccceeEEEEeeeEEeecCCCceecceeEEEEEeecCCCCceEEEEEecCc-eeEEecccccccccccccCCcceE
Q 015349 273 VETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTNMDKKGIT 351 (408)
Q Consensus 273 V~TGEEdEe~VFs~RaKLY~f~~~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt-~KVlLN~~I~~~Mkv~~~~~ksV~ 351 (408)
..||||+|++||++|||||+|.+++|+|||+|+||||+++ ++++|||||+|++ |||||||+|+++|++++++++.++
T Consensus 5 ~~tgEE~E~~lf~~raKLf~~~~~~WkERGvG~lki~~~k--~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~~ 82 (125)
T 2ec1_A 5 SSGEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTA--NQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVL 82 (125)
T ss_dssp ---CCCCCSCSEEEEEEEEEECSSSEEEEEEEEEEEEECS--SSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEEE
T ss_pred CcCCccCceeEEEEeeEEEEecCCCcccccEEEEEeeecC--CCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcEE
Confidence 3589999999999999999999999999999999999987 5899999999986 799999999999999998666566
Q ss_pred EEeecc-CCCCC--ccceEEEEEeCCHHHHHHHHHHHHHhhh
Q 015349 352 FACINS-ATEGK--SGLSTFALKFRDASIVEEFQTAVAAHKD 390 (408)
Q Consensus 352 ftavnd-~sEge--~k~~tylLRfKsaE~AdeF~~aIee~K~ 390 (408)
+.|++. +.|++ .++++|+|||+++++|++|+++|+++|.
T Consensus 83 ~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 83 IVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp EEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 556533 34654 4699999999999999999999999985
No 7
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=100.00 E-value=1.9e-34 Score=252.27 Aligned_cols=118 Identities=30% Similarity=0.467 Sum_probs=94.1
Q ss_pred cccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccC--
Q 015349 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD-- 346 (408)
Q Consensus 271 VeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~-- 346 (408)
|+|.||||+|++||++|||||+|++ ++|++||+|.||||+++.+++++|||||+++++|||||++|+++|+++++.
T Consensus 1 iev~tGEE~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~ 80 (130)
T 3n7c_A 1 MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDAD 80 (130)
T ss_dssp ---------CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTT
T ss_pred CcccCCCcCeeEEEEEEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCC
Confidence 6899999999999999999999975 589999999999999984478999999999999999999999999999875
Q ss_pred -CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhcc
Q 015349 347 -KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 393 (408)
Q Consensus 347 -~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~ 393 (408)
.+.|.|.++ +| +++++|+|||++++.|++|+++|++++..++
T Consensus 81 ~~~~v~~~~~---~d--gk~~~~~lrfks~e~A~~f~~~iee~~~~~~ 123 (130)
T 3n7c_A 81 NENLIKWPII---TD--GKLETFIIKVKQKADGRRLVGAVADAQQAME 123 (130)
T ss_dssp CTTEEEEEEE---ET--TEEEEEEEECSSHHHHHHHHHHHHHHHHHC-
T ss_pred CccEEEEEec---CC--CceEEEEEEECCHHHHHHHHHHHHHHHhhhc
Confidence 234444443 44 4689999999999999999999999998765
No 8
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=100.00 E-value=1.1e-33 Score=249.30 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=96.1
Q ss_pred cccccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecC---CCCceEEEEEecCceeEEeccccccccccc
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTN---ATGRARLLMRARGNYRLILNASLYPDMKLT 343 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~---dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~ 343 (408)
++|+|.||||+|++||++|||||+|++ ++|+|||+|.||||+|+. +++++|||||+++++||||||+|+++|+++
T Consensus 3 ~~v~v~tGEE~E~~~~~~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~ 82 (138)
T 2y8g_A 3 MKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQID 82 (138)
T ss_dssp -----------CEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCEE
T ss_pred CcccccCCCcCcEEEEEEEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCceee
Confidence 589999999999999999999999986 789999999999999983 258999999999999999999999999999
Q ss_pred ccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 344 NMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 344 ~~~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
++++++|+|+|++. +++ ++.+|||||++++.|+.|...+++++..
T Consensus 83 ~~~~k~~~~~~~d~-~d~--~~~~~lirfk~~e~a~lf~~~~~~i~~l 127 (138)
T 2y8g_A 83 KASEKSIRITAMDT-EDQ--GVKVFLISASSKDTGQLYAALHHRILAL 127 (138)
T ss_dssp EEETTEEEEECCC---CC--CCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEecC-CCC--ceEEEEEEECCHHHHHHHHHHHHHHHHh
Confidence 88899999999853 443 4779999999999998888777776643
No 9
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=4.5e-33 Score=248.61 Aligned_cols=121 Identities=30% Similarity=0.488 Sum_probs=107.1
Q ss_pred cccccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecC---CCCceEEEEEecCceeEEeccccccccccc
Q 015349 269 QEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTN---ATGRARLLMRARGNYRLILNASLYPDMKLT 343 (408)
Q Consensus 269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~---dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~ 343 (408)
++|+|.||||+|++||++|||||+|++ ++|+|||+|+||||+|+. +++++|||||+++++||||||+|+++|++.
T Consensus 15 ~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~ 94 (150)
T 2crf_A 15 EKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQID 94 (150)
T ss_dssp SCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEE
T ss_pred ccccccCCCcCeEEEEEEEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCceee
Confidence 789999999999999999999999975 789999999999999972 368999999999999999999999999999
Q ss_pred ccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhc
Q 015349 344 NMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 392 (408)
Q Consensus 344 ~~~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~ 392 (408)
.+++++|+|+|++. .|+ .+.+|+|||++++.|+.|...++++....
T Consensus 95 ~~~~k~~~~~~~d~-~d~--~~~~~lirfk~~e~a~lf~~~~e~i~~l~ 140 (150)
T 2crf_A 95 KASEKSIHITAMDT-EDQ--GVKVFLISASSKDTGQLYAALHHRILALR 140 (150)
T ss_dssp CCSSSEEEEEEEBS-SSC--CEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEeecC-CCC--ceEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 88899999999853 443 47899999999999987776666655433
No 10
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus}
Probab=99.49 E-value=7e-15 Score=108.14 Aligned_cols=44 Identities=41% Similarity=0.553 Sum_probs=39.1
Q ss_pred ccccccccccCCCCCCCcccchhhccccchhchHHHHhccceeeeccC
Q 015349 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRN 60 (408)
Q Consensus 13 kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~ 60 (408)
||+|+.|||+||+++++| .+++|||++||+|||++|+|+||||+
T Consensus 3 KR~A~~qlt~dn~~~e~e----~ee~g~f~~AS~evl~~R~I~k~rRr 46 (46)
T 2c1m_B 3 KRVAEKELTDRNWDEEDE----VEEMGTFSVASEEVMKNRAVKKAKRR 46 (46)
T ss_dssp CCCCSSCCCTTTSSCCCC----CCCCCCCCBCCHHHHTTCCCCCCCCC
T ss_pred ccchhhhhcccccccccc----cccCCccccCCHHHHhccccccccCC
Confidence 999999999999876222 36899999999999999999999884
No 11
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.47 E-value=3.3e-13 Score=117.45 Aligned_cols=105 Identities=13% Similarity=0.211 Sum_probs=91.3
Q ss_pred cceeEEEEeeeEEeecC--CCceeccee-----EEEEEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceE
Q 015349 279 NEKVVFSADSVLFEFLD--GSWKERGKG-----ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGIT 351 (408)
Q Consensus 279 dEe~VFs~RaKLY~f~~--~~WKERGvG-----~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ 351 (408)
.|..||++||+||.+++ +.|..+|.| .++|+++.. +..+|||+|+.+..+||+|+.|+++|.+.........
T Consensus 2 ~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~-~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~ 80 (130)
T 1qc6_A 2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTA-SSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQ 80 (130)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETT-TTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEE
T ss_pred CceeEEEEEEEEEEECCCCCceeECCCCceeeeEEEEEecCC-CcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEE
Confidence 47899999999999975 689999998 889999986 8999999999889999999999999999987677777
Q ss_pred EEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhcc
Q 015349 352 FACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 393 (408)
Q Consensus 352 ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~ 393 (408)
|..- -+.|-|.|.+.++|..|++.|+++.....
T Consensus 81 w~~~---------~~~~GL~F~se~eA~~F~~~~~~al~~~~ 113 (130)
T 1qc6_A 81 WRDA---------RQVYGLNFASKEEATTFSNAMLFALNIMN 113 (130)
T ss_dssp EECS---------SCEEEEEESCHHHHHHHHHHHHHHHHHTC
T ss_pred EEcC---------CEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 7421 27999999999999999999999987644
No 12
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C
Probab=99.40 E-value=6.8e-14 Score=104.87 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=37.9
Q ss_pred ccccccccccCCCCCCCcccchhhccccchhchHHHHhccceeeeccCCC
Q 015349 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQT 62 (408)
Q Consensus 13 kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~~~ 62 (408)
||+|+.||||||+++++|+ .++. .+|++||+|||++|||+||||+-.
T Consensus 3 KR~A~~qlTrdn~~~e~d~--ee~~-~~~~~AS~eVl~~RkI~k~krr~~ 49 (51)
T 1un0_C 3 KRVADAQIQRETYDSNESD--DDVT-PSTKVASSAVMNRRKIAMPKRRMA 49 (51)
T ss_pred ccccchhhccccccccccc--cccC-cccccCCHHHHhcCcccccccccc
Confidence 9999999999999873333 2333 366999999999999999988743
No 13
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=99.35 E-value=2.1e-13 Score=116.68 Aligned_cols=60 Identities=37% Similarity=0.529 Sum_probs=39.9
Q ss_pred cccccccccccCCCCCCCcccchhhccccchhchHHHHhccceeeeccCCCCCC-CCCCCCccee
Q 015349 12 KKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQTAST-PSSNPFAGIR 75 (408)
Q Consensus 12 ~kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~~~~~~-~~~npf~~~~ 75 (408)
-||+|+.||||||+++++| +++.|+|++||+|||++|+|+|+||++.... .++++|.++.
T Consensus 7 AKR~A~~qLT~dNwd~eed----~ee~GtF~~AS~eVLs~RkIkkaKRr~~~~~s~~~gaFkgFk 67 (114)
T 3tj3_C 7 AKRNAEKELTDRNWDQEDE----AEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFK 67 (114)
T ss_dssp CCCCCSSCCCTTTSSSCCC----CCCCCCCCBCCHHHHHHSCCCCCCCCC---------------
T ss_pred hhhcccccccccccccccc----ccccCCcccCCHHHHhccccccccccCCCCCCCCcccccccc
Confidence 4999999999999886332 3579999999999999999999977755433 3355666554
No 14
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=99.13 E-value=8.1e-10 Score=95.46 Aligned_cols=105 Identities=17% Similarity=0.295 Sum_probs=88.7
Q ss_pred cceeEEEEeeeEEeecC---CCceecce--eEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceEEE
Q 015349 279 NEKVVFSADSVLFEFLD---GSWKERGK--GELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFA 353 (408)
Q Consensus 279 dEe~VFs~RaKLY~f~~---~~WKERGv--G~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ft 353 (408)
.|..||+.||+||.+++ +.|..+|. |.+.|.++.. ...+||+.|+ ..+|+||..|+++|.+.+.......|.
T Consensus 2 ~E~~i~~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~-~~~yRIv~~~--~~~vv~n~~i~~~l~y~~a~p~FhqW~ 78 (120)
T 1ddw_A 2 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDST-RNVYRIISLD--GSKAIINSTITPNMTFTKTSQKFGQWA 78 (120)
T ss_dssp CEEEEEEEEEEEEEECTTTSCSEEESCSSCEEEEEEEETT-TTEEEEEEEE--TTEEEEEEECCTTCCCEECSSSEEEEE
T ss_pred CceEEEEEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCC-CCEEEEEEcc--CCEEEEeCEecCCcEEeeCCccccEEE
Confidence 47899999999999975 49999554 4555778775 6789999988 569999999999999999888888888
Q ss_pred eeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhcc
Q 015349 354 CINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 393 (408)
Q Consensus 354 avnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~ 393 (408)
.. .-.+.|-|.|.++++|..|...|++++....
T Consensus 79 d~-------~~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~ 111 (120)
T 1ddw_A 79 DS-------RANTVYGLGFSSEHHLSKFAEKFQEFKEAAR 111 (120)
T ss_dssp ET-------TTTEEEEEECSSHHHHHHHHHHHHHHHHHHC
T ss_pred cC-------CCcEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 42 1247999999999999999999999987655
No 15
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.02 E-value=2.2e-09 Score=97.76 Aligned_cols=103 Identities=17% Similarity=0.307 Sum_probs=86.9
Q ss_pred cceeEEEEeeeEEeecC---CCceecceeEEE--EEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceEEE
Q 015349 279 NEKVVFSADSVLFEFLD---GSWKERGKGELK--VNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFA 353 (408)
Q Consensus 279 dEe~VFs~RaKLY~f~~---~~WKERGvG~LK--Ink~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ft 353 (408)
.|..||.+||.||.+++ +.|..+|.|.++ |.++.. ...+|||.|+ ..+|+||..|+++|.+.+...+...|.
T Consensus 7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~-rnsyRIvg~~--d~kvvinc~I~~~l~Y~kasp~FHqW~ 83 (168)
T 1i2h_A 7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDST-RNVYRIISLD--GSKAIINSTITPNMTFTKTSQKFGQWA 83 (168)
T ss_dssp SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETT-TTEEEEEEEE--TTEEEEEEECCTTCCEEEEETTEEEEE
T ss_pred cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEEcCC-CCEEEEEEcc--CCEEEEecEecCCcEEeeCCcccceee
Confidence 57899999999999976 389995555554 777765 6789999988 469999999999999998888888888
Q ss_pred eeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 354 CINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 354 avnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
... -.+.|-|.|.++++|..|...|++++..
T Consensus 84 d~~-------~~~v~GLnF~Se~eA~~F~~~~~~ale~ 114 (168)
T 1i2h_A 84 DSR-------ANTVYGLGFSSEHHLSKFAEKFQEFKEA 114 (168)
T ss_dssp ETT-------TTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-------CcEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 621 2479999999999999999999998763
No 16
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=98.86 E-value=3e-08 Score=84.44 Aligned_cols=103 Identities=15% Similarity=0.258 Sum_probs=87.9
Q ss_pred cceeEEEEeeeEEeecC--CCceecc--eeE--EEEEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceEE
Q 015349 279 NEKVVFSADSVLFEFLD--GSWKERG--KGE--LKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITF 352 (408)
Q Consensus 279 dEe~VFs~RaKLY~f~~--~~WKERG--vG~--LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~f 352 (408)
.|..|+++||.+|.+++ +.|.-.| -|. |.|.++.. ...|||+.|.-+..+|++|+.|+++|.+.......-.|
T Consensus 2 ~e~~i~~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~-~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w 80 (112)
T 1evh_A 2 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTG-NNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQW 80 (112)
T ss_dssp CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETT-TTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEE
T ss_pred CceeEEEEEEEEEEEcCCCCceEECCCCCCceEEEEEEECC-CCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeE
Confidence 47899999999999975 6899988 344 88888875 78899999997788999999999999999876777776
Q ss_pred EeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 353 ACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 353 tavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
... -+.|-|.|.++++|..|...|+++...
T Consensus 81 ~~~---------~~~~GLnF~se~eA~~F~~~v~~al~~ 110 (112)
T 1evh_A 81 RDA---------RQVYGLNFGSKEDANVFASAMMHALEV 110 (112)
T ss_dssp ECS---------SCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ecC---------CEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 632 268999999999999999999988754
No 17
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=98.85 E-value=2.5e-08 Score=85.38 Aligned_cols=102 Identities=14% Similarity=0.274 Sum_probs=88.4
Q ss_pred ceeEEEEeeeEEeecC--CCceecce---e--EEEEEeecCCCCceEEEEEecC-ceeEEecccccccccccccCCcceE
Q 015349 280 EKVVFSADSVLFEFLD--GSWKERGK---G--ELKVNVSTNATGRARLLMRARG-NYRLILNASLYPDMKLTNMDKKGIT 351 (408)
Q Consensus 280 Ee~VFs~RaKLY~f~~--~~WKERGv---G--~LKInk~k~dt~k~RIVMR~Dg-t~KVlLN~~I~~~Mkv~~~~~ksV~ 351 (408)
|..|+++||.||.+++ +.|.-.|. | .|.|.++.. ...|||++|.-+ ..+|++|+.|+++|.+.......-.
T Consensus 3 e~~i~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~-~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~ 81 (115)
T 1egx_A 3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPT-ANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQ 81 (115)
T ss_dssp SCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETT-TTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEE
T ss_pred ceeEEEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCC-CCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceE
Confidence 6889999999999975 56999886 4 499999876 789999999987 8899999999999999987677777
Q ss_pred EEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 352 FACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 352 ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
|... -+.|-|.|.++++|..|...|+++...
T Consensus 82 w~~~---------~~~~GLnF~se~eA~~F~~~v~~al~~ 112 (115)
T 1egx_A 82 WRDA---------RQVWGLNFGSKEDAAQFAAGMASALEA 112 (115)
T ss_dssp EESS---------SCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EecC---------CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 7632 268999999999999999999988754
No 18
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=98.62 E-value=2.3e-07 Score=79.80 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=81.8
Q ss_pred cceeEEEEeeeEEeecC--CCceecceeEE---EEEeec----CCCCceEEEEEecCceeEEecccccccccccccCCcc
Q 015349 279 NEKVVFSADSVLFEFLD--GSWKERGKGEL---KVNVST----NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKG 349 (408)
Q Consensus 279 dEe~VFs~RaKLY~f~~--~~WKERGvG~L---KInk~k----~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ks 349 (408)
.|..|+.+||.+|.+++ +.|.-.|.|-| .|..++ .....|||+.|+-+..+|++|+.|+++|.+.......
T Consensus 2 ~~~~i~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~F 81 (118)
T 1xod_A 2 SDDSYARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTF 81 (118)
T ss_dssp ---CCEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTE
T ss_pred CCccEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcc
Confidence 36789999999999975 68999876664 555543 1257899999997788999999999999999876777
Q ss_pred eEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 350 ITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 350 V~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
-.|... -+.|-|.|.++++|..|...|.++...
T Consensus 82 h~w~~~---------~~~~GL~F~se~eA~~F~~~v~~al~~ 114 (118)
T 1xod_A 82 HHWRIG---------DKKFGLTFQSPADARAFDRGIRRAIED 114 (118)
T ss_dssp EEEEET---------TEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEeC---------CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 777742 267999999999999999999988754
No 19
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.57 E-value=5e-07 Score=78.64 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=86.8
Q ss_pred ccceeEEEEeeeEEeecC--CCceecceeE---EEEEeec----CCCCceEEEEEecCceeEEecccccccccccccCCc
Q 015349 278 ENEKVVFSADSVLFEFLD--GSWKERGKGE---LKVNVST----NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKK 348 (408)
Q Consensus 278 EdEe~VFs~RaKLY~f~~--~~WKERGvG~---LKInk~k----~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~k 348 (408)
..|..|+.+||.+|.+++ +.|.-.|.|- +.|...+ .....|||+.|+-+..+|++|..|+++|.+......
T Consensus 10 ~~~~~i~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~ 89 (126)
T 2jp2_A 10 DDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPT 89 (126)
T ss_dssp SCCSEEEEEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETT
T ss_pred CCcceEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCc
Confidence 468899999999999975 6899988776 4455443 225789999999778999999999999999987677
Q ss_pred ceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 349 GITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 349 sV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
.-.|... -+.|-|.|.++++|..|...|.++...
T Consensus 90 FH~w~~~---------~~~~GLnF~se~eA~~F~~~v~~al~~ 123 (126)
T 2jp2_A 90 FHHWKVD---------NRKFGLTFQSPADARAFDRGVRKAIED 123 (126)
T ss_dssp EEEEECS---------SSEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcC---------CEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 7777642 156999999999999999999988754
No 20
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=97.90 E-value=0.00016 Score=63.54 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=83.1
Q ss_pred eEEEEeeeEEeecC--CCceecc---eeEEEEEeecC----CCCceEEEEEecCceeEEecccccccccccccCCcceEE
Q 015349 282 VVFSADSVLFEFLD--GSWKERG---KGELKVNVSTN----ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITF 352 (408)
Q Consensus 282 ~VFs~RaKLY~f~~--~~WKERG---vG~LKInk~k~----dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~f 352 (408)
..|.+||.+|.+++ +.|.-.| +-.+.|.++.. +...+|||=|+-+..+||||..|.++|++.+.....=.|
T Consensus 12 ~~~~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqW 91 (130)
T 3syx_A 12 SYARVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHW 91 (130)
T ss_dssp EEEEEEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEE
T ss_pred eeeEEEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEecccccccc
Confidence 57899999999986 6799875 33566666521 135799999987777899999999999999887777777
Q ss_pred EeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhccc
Q 015349 353 ACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTA 394 (408)
Q Consensus 353 tavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~~ 394 (408)
..- -+.|=|.|.+.++|..|...|..+......
T Consensus 92 rd~---------~~~yGL~F~S~~dA~~F~~~~~~Al~~L~~ 124 (130)
T 3syx_A 92 KID---------DKKFGLTFQSPADARAFDRGIRRAIEDISQ 124 (130)
T ss_dssp EET---------TEEEEEEESSHHHHHHHHHHHHHHHHGGGS
T ss_pred ccc---------CeEeecccCCHHHHHHHHHHHHHHHHHHhc
Confidence 641 156999999999999999999888876653
No 21
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=97.08 E-value=0.0056 Score=54.93 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=78.4
Q ss_pred eeEEEEeeeEEeecC-CCceecceeEEEEEeecCCCCce--EEEEEecCceeEEecccccccccccccCCcceEEEeecc
Q 015349 281 KVVFSADSVLFEFLD-GSWKERGKGELKVNVSTNATGRA--RLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINS 357 (408)
Q Consensus 281 e~VFs~RaKLY~f~~-~~WKERGvG~LKInk~k~dt~k~--RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftavnd 357 (408)
.+|...=|.||.... +.|.-++.|.|-|.+... ...+ |||-.. .++|+.++-|+.+|.+...-.. |..+..
T Consensus 41 ~~lataVaqLy~a~~~~~W~~~~~Gal~~VkD~~-~rsyf~RlvDl~--~~~viweqELY~~f~Y~~~r~~---FHtFe~ 114 (152)
T 1mke_A 41 VTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNP-QRSYFLRIFDIK--DGKLLWEQELYNNFVYNSPRGY---FHTFAG 114 (152)
T ss_dssp EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEETT-TTEEEEEEECSS--SCSEEEEEECCSSCCCBCSSSS---EEEEEC
T ss_pred cEEEEeeEEEEEECCCCceEecCceEEEEEEECC-CCeEEEEEEEcc--CCeEEEEeecccceeeccCCCe---EEEEec
Confidence 578888899999965 589999999999999874 3333 888886 4689999999999999765444 444421
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhh
Q 015349 358 ATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391 (408)
Q Consensus 358 ~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~ 391 (408)
| -.++-|.|-+.++|..|+..|......
T Consensus 115 --d----~c~~GLnFade~EA~~F~~~V~~~l~~ 142 (152)
T 1mke_A 115 --D----TCQVALNFANEEEAKKFRKAVTDLLGR 142 (152)
T ss_dssp --S----SSEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred --C----CcEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 1 367999999999999999999987643
No 22
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=97.02 E-value=0.0049 Score=56.12 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=77.8
Q ss_pred eEEEEeeeEEeecC-CCceecceeEEEEEeecCCCCc--eEEEEEecCceeEEecccccccccccccCCcceEEEeeccC
Q 015349 282 VVFSADSVLFEFLD-GSWKERGKGELKVNVSTNATGR--ARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSA 358 (408)
Q Consensus 282 ~VFs~RaKLY~f~~-~~WKERGvG~LKInk~k~dt~k--~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftavnd~ 358 (408)
+|...=|.||.... +.|.-.+.|.|-|.+... ... .|||-+. .++|+.++-|+.+|.+...-....+|-.
T Consensus 59 ~lataVaqLy~a~~~~~W~~~~~Gal~~vkD~~-~rsyf~RlvDl~--~~~vvweqELY~~f~Y~~~r~~FHtFe~---- 131 (169)
T 2ifs_A 59 TMSSAVVQLYAADRNCMWSKKCSGVACLVKDNP-QRSYFLRIFDIK--DGKLLWEQELYNNFVYNSPRGYFHTFAG---- 131 (169)
T ss_dssp EEEEEEEEEEEEETTTEEEEEEEEEEEEEEETT-TTEEEEEEEETT--TCCCCEEEECCSSCCCBCCCSSEEEEEC----
T ss_pred EEEEEEEEEEEECCCCeeEecCceEEEEEEECC-CCeEEEEEEEcc--CCeEEEEeecccceeeccCCCeEEEeec----
Confidence 66777789999965 589999999999999874 333 3888887 4589999999999999765444444431
Q ss_pred CCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhc
Q 015349 359 TEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 392 (408)
Q Consensus 359 sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~ 392 (408)
| -++|-|.|-+.++|..|+.+|.......
T Consensus 132 -d----~c~~GLnFade~EA~~F~~~V~~~l~~~ 160 (169)
T 2ifs_A 132 -D----TCQVALNFANEEEAKKFRKAVTDLLGRR 160 (169)
T ss_dssp -S----SSEEEEECSCHHHHHHHHHHHHHHHHHC
T ss_pred -C----CcEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 2 3689999999999999999999876543
No 23
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=91.24 E-value=1.2 Score=38.49 Aligned_cols=77 Identities=8% Similarity=0.172 Sum_probs=54.6
Q ss_pred eEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHH
Q 015349 304 GELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQT 383 (408)
Q Consensus 304 G~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~ 383 (408)
..++|..+-+ ....-|.+-.+ .+..++-..|.++..+..+++++.+|+.- -...||||.+..+...|+.
T Consensus 32 q~v~L~~~yd-pqg~sv~i~~~-~~~~l~ef~V~~~TEc~rVGk~S~litlg---------~~slLl~Fas~~d~~~F~~ 100 (117)
T 2oqb_A 32 QALRLEVRAG-PDAAGIALYSH-EDVCVFKCSVSRETECSRVGRQSFIITLG---------CNSVLIQFATPHDFCSFYN 100 (117)
T ss_dssp EEEEEEEEEC-SSEEEEEEECT-TCCEEEEEEEETTSEEEEETTTEEEEEET---------TEEEEEECSSHHHHHHHHH
T ss_pred ceEEEEEEEC-CCCcEEEEEcC-CCeEEEEEEecCCccceeecCeEEEEEEC---------CcEEEEEeCCHHHHHHHHH
Confidence 3444444443 23333333333 25566667778888898899999998873 2579999999999999999
Q ss_pred HHHHhhhh
Q 015349 384 AVAAHKDK 391 (408)
Q Consensus 384 aIee~K~~ 391 (408)
.|+.++..
T Consensus 101 ~l~k~~~~ 108 (117)
T 2oqb_A 101 ILKTCRGH 108 (117)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 99999864
No 24
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=79.94 E-value=29 Score=30.05 Aligned_cols=98 Identities=9% Similarity=0.166 Sum_probs=67.7
Q ss_pred eeEEE-EeeeEEeecC--CCceecce-eEEEEEeecCCCCceEEEEEec-CceeEEecccccccccccccCCcceEEEee
Q 015349 281 KVVFS-ADSVLFEFLD--GSWKERGK-GELKVNVSTNATGRARLLMRAR-GNYRLILNASLYPDMKLTNMDKKGITFACI 355 (408)
Q Consensus 281 e~VFs-~RaKLY~f~~--~~WKERGv-G~LKInk~k~dt~k~RIVMR~D-gt~KVlLN~~I~~~Mkv~~~~~ksV~ftav 355 (408)
++|+. ..|-||.|+. ++|...|+ |.|.|-+... .-+++|++=+. ++.-+++ .|.++|.+... +..|+|-.-
T Consensus 30 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~-~P~~~~ivLNR~~~~n~~~--~l~~~~~~e~~-~~~li~r~~ 105 (134)
T 2lyd_A 30 EIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNA-EPFHSIFINNRLNTTSFVE--PITGSLELQSQ-PPFLLYRNE 105 (134)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSS-SSSEEEEEEETTTTEEEEE--ECCSSCEEEEE-TTEEEEEEG
T ss_pred HHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccC-CCceEEEEEcCCCCcceeE--EcCCCcEEEee-CCEEEEECC
Confidence 34444 4689999975 57987776 8888877654 55676655443 3444554 47788888876 445554321
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhh
Q 015349 356 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKD 390 (408)
Q Consensus 356 nd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~ 390 (408)
.-..|-|=|-+.++++++.+.|+....
T Consensus 106 --------~~~I~GiWf~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 106 --------RSRIRGFWFYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp --------GGEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred --------CCcEEEEEecChHHHHHHHHHHHHHHh
Confidence 135799999999999999999887653
No 25
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=73.03 E-value=45 Score=28.67 Aligned_cols=92 Identities=10% Similarity=0.110 Sum_probs=61.4
Q ss_pred EEeeeEEeecC--CCceecce-eEEEEEeecCCCCceEEEEEe-cCceeEEecccccccccccccCCcceEEEeeccCCC
Q 015349 285 SADSVLFEFLD--GSWKERGK-GELKVNVSTNATGRARLLMRA-RGNYRLILNASLYPDMKLTNMDKKGITFACINSATE 360 (408)
Q Consensus 285 s~RaKLY~f~~--~~WKERGv-G~LKInk~k~dt~k~RIVMR~-Dgt~KVlLN~~I~~~Mkv~~~~~ksV~ftavnd~sE 360 (408)
...|-||.|.. ++|...|+ |+|-|-+.. .-+++|++=+ .++.-++++ |.++|.++.. +..|++-.-
T Consensus 30 a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~--~P~~~~iVlNR~~~~n~~~~--i~~~~~~e~~-~~~l~~r~~----- 99 (127)
T 2qkl_A 30 ASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQ--RARVGYVILNRNSPENLYLF--INHPSNVHLV-DRYLIHRTE----- 99 (127)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEET--TCCEEEEEEESSSSCCEEEE--ECSGGGEEEE-TTEEEEEET-----
T ss_pred CCeEEEEEecCCCCceEEcCcEEEEEEEEcc--CCceEEEEEcCCCCcCeeEe--cCCCceEEEe-CCEEEEEcC-----
Confidence 44689999984 69999987 888877765 3455554433 334444443 6778888866 445554431
Q ss_pred CCccceEEEEEeCCHHHHHHHHHHHHHhh
Q 015349 361 GKSGLSTFALKFRDASIVEEFQTAVAAHK 389 (408)
Q Consensus 361 ge~k~~tylLRfKsaE~AdeF~~aIee~K 389 (408)
.-..|-|=|-+.++++.+.+.|+...
T Consensus 100 ---~~~i~GiWf~~~~d~~~i~~~l~~ll 125 (127)
T 2qkl_A 100 ---NQHVVGLWMFDPNDMSRIFNIVKESL 125 (127)
T ss_dssp ---TTEEEEEEESSTHHHHHHHHHHHHHT
T ss_pred ---CCcEEEEEEEchHHHHHHHHHHHHHH
Confidence 14689999999999999999998754
No 26
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=66.35 E-value=20 Score=31.52 Aligned_cols=107 Identities=16% Similarity=0.277 Sum_probs=76.1
Q ss_pred CccceeEEEEe-eeEEeecC---------CCcee---cceeEEEEEeecCCCCceEEEEEecCceeEEecccc--ccccc
Q 015349 277 EENEKVVFSAD-SVLFEFLD---------GSWKE---RGKGELKVNVSTNATGRARLLMRARGNYRLILNASL--YPDMK 341 (408)
Q Consensus 277 EEdEe~VFs~R-aKLY~f~~---------~~WKE---RGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I--~~~Mk 341 (408)
++=|.+||.++ |.+|+.-. ..|.. .=.|-|||.... ..+-|.+-...+|.|..+++| +++..
T Consensus 5 ~~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g---~~~~I~LeD~~tGeLFA~cPv~~~~~~~ 81 (133)
T 1tqz_A 5 LEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKG---KIAYIKLEDKVSGELFAQAPVEQYPGIA 81 (133)
T ss_dssp CCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCS---SSEEEEEECSSCCSSCEEEEECSSCCCC
T ss_pred cceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeC---CEEEEEEEeCCCCcEEEeCcccCCCCcc
Confidence 45677888776 57777652 35753 457889998754 477777777788999999999 66777
Q ss_pred ccccC--CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhh
Q 015349 342 LTNMD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKD 390 (408)
Q Consensus 342 v~~~~--~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~ 390 (408)
|++.- .+...+-..+ +.+.-.-.=|=|..-.+|=+|.-+|++|..
T Consensus 82 VE~v~DSSRYFVlRv~d----~~gr~AfiGiGF~eR~dAFDF~vaLqd~~k 128 (133)
T 1tqz_A 82 VETVTDSSRYFVIRIQD----GTGRSAFIGIGFTDRGDAFDFNVSLQDHFK 128 (133)
T ss_dssp EEECTTCCSCEEEEEEE----TTTEEEEEEEECSCHHHHHHHHHHHHHHHS
T ss_pred eEEeecCcCeEEEEEEC----CCCcEEEEeeeecccccccchHHHHHHHHH
Confidence 77653 3444444432 234455666889999999999999999874
No 27
>1f59_C NSP1P, FXFG nucleoporin repeats; protein-protein complex, transport protein receptor; 2.80A {Saccharomyces cerevisiae} SCOP: j.70.1.1
Probab=30.52 E-value=27 Score=22.64 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=8.7
Q ss_pred CCCCccccccCC
Q 015349 218 SSQLSSFGQLSS 229 (408)
Q Consensus 218 ~t~~fSFg~~ss 229 (408)
+-|.||||....
T Consensus 4 skpafsfg~~~~ 15 (28)
T 1f59_C 4 SKPAFSFGXXXX 15 (28)
T ss_dssp CCCCCCSSSCCC
T ss_pred CCcccccccccc
Confidence 468899996554
No 28
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=26.30 E-value=3.5e+02 Score=27.58 Aligned_cols=56 Identities=9% Similarity=0.126 Sum_probs=31.0
Q ss_pred eeEEEEeeeEEeecCCC-ceecceeEEEEEeecCCCCceEEEEEecCceeEEecccccc
Q 015349 281 KVVFSADSVLFEFLDGS-WKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYP 338 (408)
Q Consensus 281 e~VFs~RaKLY~f~~~~-WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~ 338 (408)
.+|++.||=.+.|..+- =-+.-.|.|+|.+.. ..-.++.-|...++.|-....|++
T Consensus 25 ~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~e--d~l~hf~W~~R~~~~~Eddlii~P 81 (411)
T 2kr0_A 25 KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTD--DSLIHFCWKDRTSGNVEDDLIIFP 81 (411)
T ss_dssp SCSEEECEEEEEESSSSEEECCSCEEEEEEECT--TSCEEEEEEESSSCCEEEEEEECT
T ss_pred ceeEEEeCceEEecCCEEeecCCCcEEEEEeCC--CCcEEEEEecCCCCCcccceEEcC
Confidence 35566666444443321 123455778887754 345666655555566666666655
No 29
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=25.90 E-value=3e+02 Score=23.16 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=52.3
Q ss_pred cceeEEEEeeeEEeecCCCceecceeEEEEEeecCCCCceEEEEEecCce--eEEecccccccccccccCCcceEEEeec
Q 015349 279 NEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNY--RLILNASLYPDMKLTNMDKKGITFACIN 356 (408)
Q Consensus 279 dEe~VFs~RaKLY~f~~~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~--KVlLN~~I~~~Mkv~~~~~ksV~ftavn 356 (408)
+|++|+.+..--|+. .+ |+|.|... ||.-+.+... -|++...=..+++++|.++--|++-.+-
T Consensus 5 ~~~~ll~v~~v~yKK-------~d-GtL~l~~d-------~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l 69 (108)
T 1pfj_A 5 SEEVLLIVKKVRQKK-------QD-GALYLMAE-------RIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVL 69 (108)
T ss_dssp SCCEEEEESCCBCSS-------CB-CEEEEETT-------EEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEEC
T ss_pred chheeEEehhheeec-------CC-ceEEEEcc-------eEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEE
Confidence 346666655444443 33 78877652 6665554444 3555433334556666655455554442
Q ss_pred cCCCCCccceEEEEEeCCH----HHHHHHHHHHHHhhh
Q 015349 357 SATEGKSGLSTFALKFRDA----SIVEEFQTAVAAHKD 390 (408)
Q Consensus 357 d~sEge~k~~tylLRfKsa----E~AdeF~~aIee~K~ 390 (408)
.. ..+|++.|-++ .+|+.+++.|.....
T Consensus 70 ~~------~~~~~F~Ftn~~~a~~erd~VKd~L~~~l~ 101 (108)
T 1pfj_A 70 HA------GDTTNFHFSNESTAVKERDAVKDLLQQLLP 101 (108)
T ss_dssp SS------SCEEEEECCCSSCTTHHHHHHHHHHHHHHH
T ss_pred eC------CCceEEEEcCcHHHHHHHHHHHHHHHHHHH
Confidence 21 36899999875 567777777666554
No 30
>1o6o_D Nucleoporin NSP1; nuclear transport, nuclear trafficking, transport factor, repeat, protein transport; 2.80A {Saccharomyces cerevisiae}
Probab=20.82 E-value=49 Score=28.43 Aligned_cols=9 Identities=33% Similarity=0.888 Sum_probs=5.4
Q ss_pred CccccCCCC
Q 015349 245 STFAFGSIP 253 (408)
Q Consensus 245 ~~FsFG~~s 253 (408)
.+|+||+..
T Consensus 75 p~FSFGak~ 83 (119)
T 1o6o_D 75 AAISFGAKP 83 (119)
T ss_pred CccccccCC
Confidence 456676654
Done!