Query 015350
Match_columns 408
No_of_seqs 415 out of 2737
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.4 1.5E-13 5.2E-18 104.9 5.4 56 286-341 12-70 (78)
2 1x4j_A Ring finger protein 38; 99.4 1.2E-13 4E-18 104.8 3.7 50 287-336 21-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.4 2.2E-13 7.4E-18 101.5 4.7 50 287-336 12-64 (69)
4 2ep4_A Ring finger protein 24; 99.4 3.6E-13 1.2E-17 101.7 5.2 50 287-336 13-65 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.4 2E-13 6.8E-18 96.9 3.4 47 288-334 4-54 (55)
6 2l0b_A E3 ubiquitin-protein li 99.4 9.2E-14 3.1E-18 109.5 1.8 49 287-335 38-89 (91)
7 2d8t_A Dactylidin, ring finger 99.4 1.5E-13 5E-18 103.1 2.1 49 287-335 13-61 (71)
8 2djb_A Polycomb group ring fin 99.4 5.9E-13 2E-17 100.0 5.4 51 287-337 13-64 (72)
9 2ecl_A Ring-box protein 2; RNF 99.3 6.8E-13 2.3E-17 102.1 5.5 49 287-335 13-76 (81)
10 2ea6_A Ring finger protein 4; 99.3 2.9E-13 1E-17 100.5 2.8 49 287-335 13-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.3 3E-13 1E-17 101.2 2.4 51 287-337 8-65 (71)
12 2ecm_A Ring finger and CHY zin 99.3 5.4E-13 1.9E-17 94.6 3.0 47 288-334 4-54 (55)
13 1chc_A Equine herpes virus-1 r 99.3 9.8E-13 3.4E-17 97.5 4.0 49 287-335 3-52 (68)
14 2ysl_A Tripartite motif-contai 99.3 1.6E-12 5.4E-17 97.8 4.8 50 287-336 18-70 (73)
15 2xeu_A Ring finger protein 4; 99.3 5.7E-13 2E-17 97.4 2.3 49 288-336 2-57 (64)
16 2ecn_A Ring finger protein 141 99.3 1.1E-12 3.8E-17 97.9 3.6 50 287-337 13-62 (70)
17 2ecy_A TNF receptor-associated 99.3 1.5E-12 5E-17 96.1 3.9 50 287-336 13-63 (66)
18 1v87_A Deltex protein 2; ring- 99.3 3E-12 1E-16 105.0 6.0 49 288-336 24-95 (114)
19 2yur_A Retinoblastoma-binding 99.3 2.5E-12 8.5E-17 97.2 4.9 49 287-335 13-64 (74)
20 2csy_A Zinc finger protein 183 99.3 1.7E-12 5.7E-17 99.8 3.8 48 287-334 13-60 (81)
21 3dpl_R Ring-box protein 1; ubi 99.3 2E-12 6.7E-17 104.5 3.7 48 287-334 35-100 (106)
22 4ayc_A E3 ubiquitin-protein li 99.2 1.5E-12 5.1E-17 110.7 2.3 47 289-335 53-99 (138)
23 1t1h_A Gspef-atpub14, armadill 99.2 3.4E-12 1.2E-16 97.3 4.0 50 287-336 6-56 (78)
24 2ct2_A Tripartite motif protei 99.2 6.4E-12 2.2E-16 97.9 5.6 50 287-336 13-69 (88)
25 2ysj_A Tripartite motif-contai 99.2 8.2E-12 2.8E-16 91.1 4.8 44 286-329 17-63 (63)
26 2ecv_A Tripartite motif-contai 99.2 1.2E-11 4E-16 95.6 5.4 50 287-336 17-72 (85)
27 2egp_A Tripartite motif-contai 99.2 2.6E-12 8.8E-17 98.1 1.5 50 287-336 10-66 (79)
28 2ecw_A Tripartite motif-contai 99.2 9.2E-12 3.2E-16 96.2 4.6 50 287-336 17-72 (85)
29 3ztg_A E3 ubiquitin-protein li 99.2 1.1E-11 3.6E-16 97.7 4.2 48 287-334 11-61 (92)
30 2ecj_A Tripartite motif-contai 99.2 1.4E-11 4.9E-16 88.1 3.4 43 287-329 13-58 (58)
31 4a0k_B E3 ubiquitin-protein li 99.1 4.9E-12 1.7E-16 103.7 0.5 49 287-335 46-112 (117)
32 3lrq_A E3 ubiquitin-protein li 99.1 7.2E-12 2.4E-16 100.4 1.4 48 288-335 21-70 (100)
33 3fl2_A E3 ubiquitin-protein li 99.1 2.1E-11 7.1E-16 101.6 3.6 48 288-335 51-99 (124)
34 2ckl_A Polycomb group ring fin 99.1 1.9E-11 6.7E-16 99.2 3.3 49 287-335 13-62 (108)
35 2y43_A E3 ubiquitin-protein li 99.1 1.7E-11 5.9E-16 97.8 2.5 48 288-335 21-69 (99)
36 2d8s_A Cellular modulator of i 99.1 4.7E-11 1.6E-15 91.3 4.5 51 287-337 13-72 (80)
37 1bor_A Transcription factor PM 99.1 2.1E-11 7.1E-16 86.9 1.4 49 287-338 4-52 (56)
38 1g25_A CDK-activating kinase a 99.1 4.6E-11 1.6E-15 87.7 3.2 48 289-336 3-56 (65)
39 2kre_A Ubiquitin conjugation f 99.1 6.4E-11 2.2E-15 94.7 4.2 49 287-335 27-75 (100)
40 3l11_A E3 ubiquitin-protein li 99.1 1.3E-11 4.3E-16 101.5 -0.1 49 287-335 13-62 (115)
41 4ap4_A E3 ubiquitin ligase RNF 99.1 3.8E-11 1.3E-15 100.7 2.6 50 287-336 5-61 (133)
42 2kr4_A Ubiquitin conjugation f 99.1 6.4E-11 2.2E-15 91.8 3.7 49 287-335 12-60 (85)
43 1jm7_A BRCA1, breast cancer ty 99.0 7.3E-11 2.5E-15 96.2 3.7 48 289-336 21-71 (112)
44 1wgm_A Ubiquitin conjugation f 99.0 1.2E-10 4.1E-15 92.7 4.5 50 287-336 20-70 (98)
45 2ckl_B Ubiquitin ligase protei 99.0 3.1E-11 1.1E-15 105.6 1.1 48 288-335 53-102 (165)
46 1rmd_A RAG1; V(D)J recombinati 99.0 3.6E-11 1.2E-15 98.9 0.8 49 288-336 22-71 (116)
47 2vje_B MDM4 protein; proto-onc 99.0 1.2E-10 4.2E-15 84.9 3.3 48 287-334 5-55 (63)
48 1z6u_A NP95-like ring finger p 99.0 9.9E-11 3.4E-15 100.7 3.2 49 288-336 77-126 (150)
49 2vje_A E3 ubiquitin-protein li 99.0 1.3E-10 4.3E-15 85.1 3.3 47 288-334 7-56 (64)
50 3hct_A TNF receptor-associated 99.0 6.8E-11 2.3E-15 97.5 1.9 50 287-336 16-66 (118)
51 2ct0_A Non-SMC element 1 homol 99.0 5.2E-10 1.8E-14 83.8 5.9 50 287-336 13-65 (74)
52 1e4u_A Transcriptional repress 99.0 5.2E-10 1.8E-14 85.1 5.5 51 287-337 9-64 (78)
53 4ap4_A E3 ubiquitin ligase RNF 98.9 1.4E-10 4.6E-15 97.2 1.5 51 286-336 69-126 (133)
54 2y1n_A E3 ubiquitin-protein li 98.9 2.7E-10 9.3E-15 111.5 3.2 48 289-336 332-380 (389)
55 3knv_A TNF receptor-associated 98.9 1.9E-10 6.6E-15 97.8 1.6 49 287-335 29-78 (141)
56 2c2l_A CHIP, carboxy terminus 98.9 8.6E-10 2.9E-14 104.2 5.3 49 287-335 206-255 (281)
57 1jm7_B BARD1, BRCA1-associated 98.9 4.1E-10 1.4E-14 92.7 2.2 46 288-335 21-67 (117)
58 4ic3_A E3 ubiquitin-protein li 98.8 3.6E-10 1.2E-14 85.2 0.4 44 288-335 23-67 (74)
59 2ea5_A Cell growth regulator w 98.8 3E-09 1E-13 78.7 3.6 47 285-335 11-58 (68)
60 2yu4_A E3 SUMO-protein ligase 98.8 1.5E-09 5.3E-14 85.6 1.8 48 287-334 5-62 (94)
61 2ecg_A Baculoviral IAP repeat- 98.7 8E-10 2.7E-14 83.5 -1.4 44 288-335 24-68 (75)
62 2f42_A STIP1 homology and U-bo 98.7 2.1E-09 7.2E-14 94.5 1.1 49 287-335 104-153 (179)
63 3hcs_A TNF receptor-associated 98.7 3.1E-09 1.1E-13 93.2 1.6 50 287-336 16-66 (170)
64 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.4E-08 4.9E-13 96.5 2.9 49 287-335 306-373 (381)
65 2bay_A PRE-mRNA splicing facto 98.6 1.3E-08 4.4E-13 73.5 1.6 49 289-337 3-52 (61)
66 2yho_A E3 ubiquitin-protein li 98.6 1E-08 3.5E-13 78.2 1.0 43 289-335 18-61 (79)
67 3t6p_A Baculoviral IAP repeat- 98.5 6E-08 2E-12 94.2 4.3 44 288-335 294-338 (345)
68 3htk_C E3 SUMO-protein ligase 98.5 9E-08 3.1E-12 88.3 5.2 48 288-335 180-232 (267)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.5 6.3E-08 2.2E-12 69.6 3.1 48 287-334 4-58 (60)
70 1wim_A KIAA0161 protein; ring 98.3 1.3E-07 4.6E-12 74.3 1.9 45 288-332 4-61 (94)
71 3vk6_A E3 ubiquitin-protein li 97.9 4.3E-06 1.5E-10 65.1 2.6 45 291-335 3-49 (101)
72 3nw0_A Non-structural maintena 97.7 3.1E-05 1.1E-09 71.2 4.9 48 289-336 180-230 (238)
73 2ko5_A Ring finger protein Z; 96.5 0.0029 9.8E-08 48.3 4.7 47 289-337 28-75 (99)
74 3m62_A Ubiquitin conjugation f 94.3 0.049 1.7E-06 58.8 6.1 49 288-336 890-939 (968)
75 2jun_A Midline-1; B-BOX, TRIM, 93.6 0.022 7.6E-07 44.5 1.4 31 288-318 2-35 (101)
76 2lri_C Autoimmune regulator; Z 92.4 0.067 2.3E-06 38.5 2.4 44 287-333 10-60 (66)
77 1wil_A KIAA1045 protein; ring 91.6 0.11 3.9E-06 38.8 2.9 32 287-319 13-47 (89)
78 1weo_A Cellulose synthase, cat 87.9 1.9 6.6E-05 32.5 7.0 48 288-335 15-70 (93)
79 2cs3_A Protein C14ORF4, MY039 86.8 0.76 2.6E-05 33.9 4.1 36 287-322 13-52 (93)
80 1fp0_A KAP-1 corepressor; PHD 82.5 0.53 1.8E-05 35.8 1.8 44 286-332 22-72 (88)
81 1mm2_A MI2-beta; PHD, zinc fin 82.4 0.26 9E-06 34.7 0.0 44 286-332 6-56 (61)
82 3o36_A Transcription intermedi 81.9 0.51 1.8E-05 41.0 1.8 43 288-333 3-52 (184)
83 2k16_A Transcription initiatio 81.5 0.28 9.4E-06 36.1 -0.1 49 287-335 16-71 (75)
84 2l5u_A Chromodomain-helicase-D 81.1 0.61 2.1E-05 32.8 1.6 43 287-332 9-58 (61)
85 3u5n_A E3 ubiquitin-protein li 80.5 0.39 1.3E-05 42.7 0.5 44 287-333 5-55 (207)
86 1f62_A Transcription factor WS 79.3 0.56 1.9E-05 31.5 0.8 41 291-331 2-49 (51)
87 2puy_A PHD finger protein 21A; 77.7 0.17 5.7E-06 35.6 -2.3 46 287-335 3-55 (60)
88 2yql_A PHD finger protein 21A; 76.4 0.23 7.7E-06 34.4 -1.9 43 286-331 6-55 (56)
89 1wev_A Riken cDNA 1110020M19; 74.9 0.57 1.9E-05 35.6 -0.1 47 288-334 15-74 (88)
90 2e6r_A Jumonji/ARID domain-con 70.5 1.1 3.8E-05 34.2 0.6 46 287-332 14-66 (92)
91 1xwh_A Autoimmune regulator; P 69.3 0.82 2.8E-05 32.6 -0.4 42 287-331 6-54 (66)
92 2ysm_A Myeloid/lymphoid or mix 68.9 1.1 3.6E-05 35.5 0.1 44 287-330 5-55 (111)
93 2ro1_A Transcription intermedi 68.7 2.5 8.7E-05 36.8 2.6 41 289-332 2-49 (189)
94 1we9_A PHD finger family prote 66.2 1 3.5E-05 31.7 -0.4 45 287-331 4-57 (64)
95 1wen_A Inhibitor of growth fam 65.8 4.7 0.00016 29.1 3.1 42 288-333 15-66 (71)
96 2lv9_A Histone-lysine N-methyl 64.7 2.2 7.4E-05 33.0 1.2 41 290-331 29-75 (98)
97 2l43_A N-teminal domain from h 62.1 1.5 5.2E-05 33.2 -0.2 48 287-334 23-77 (88)
98 2lbm_A Transcriptional regulat 61.3 4.2 0.00014 33.7 2.4 43 286-331 60-116 (142)
99 2yt5_A Metal-response element- 61.2 1.8 6.2E-05 30.6 0.1 47 287-333 4-62 (66)
100 2dar_A PDZ and LIM domain prot 60.9 9 0.00031 28.5 4.1 40 288-335 24-63 (90)
101 3shb_A E3 ubiquitin-protein li 59.6 1.3 4.5E-05 32.7 -0.9 41 291-331 28-76 (77)
102 1weu_A Inhibitor of growth fam 59.4 5.3 0.00018 30.4 2.5 41 289-333 36-86 (91)
103 3lqh_A Histone-lysine N-methyl 59.4 2.9 9.9E-05 36.3 1.1 45 289-333 2-64 (183)
104 4gne_A Histone-lysine N-methyl 58.8 7.5 0.00026 30.5 3.3 44 287-335 13-65 (107)
105 3v43_A Histone acetyltransfera 58.1 1.8 6E-05 34.4 -0.5 41 291-331 63-111 (112)
106 3i2d_A E3 SUMO-protein ligase 56.7 5.8 0.0002 38.2 2.8 46 289-334 249-299 (371)
107 2e6s_A E3 ubiquitin-protein li 55.3 2.8 9.5E-05 30.9 0.3 43 289-331 26-76 (77)
108 4fo9_A E3 SUMO-protein ligase 55.2 6.5 0.00022 37.7 2.8 46 289-334 215-265 (360)
109 1wem_A Death associated transc 53.4 5.1 0.00017 29.1 1.5 45 288-333 15-71 (76)
110 3ask_A E3 ubiquitin-protein li 53.0 3.2 0.00011 37.2 0.3 42 290-331 175-224 (226)
111 3ql9_A Transcriptional regulat 52.9 6.9 0.00023 31.8 2.3 44 286-332 54-111 (129)
112 2vnf_A ING 4, P29ING4, inhibit 51.8 4.2 0.00014 28.3 0.7 39 289-331 10-58 (60)
113 1x62_A C-terminal LIM domain p 49.0 12 0.0004 27.1 2.9 39 288-334 14-52 (79)
114 1wep_A PHF8; structural genomi 48.8 15 0.0005 26.9 3.4 45 288-333 11-64 (79)
115 3asl_A E3 ubiquitin-protein li 48.6 3.2 0.00011 29.9 -0.3 41 291-331 20-68 (70)
116 2ysm_A Myeloid/lymphoid or mix 47.6 4.2 0.00014 32.0 0.2 42 291-332 56-104 (111)
117 1wfk_A Zinc finger, FYVE domai 46.9 2.1 7.3E-05 32.4 -1.6 48 288-335 8-66 (88)
118 2ku3_A Bromodomain-containing 46.5 4 0.00014 29.5 -0.1 46 287-332 14-66 (71)
119 2gmg_A Hypothetical protein PF 46.3 3.5 0.00012 32.2 -0.4 28 302-334 68-95 (105)
120 2fiy_A Protein FDHE homolog; F 45.7 4.2 0.00014 38.3 -0.1 46 287-332 180-231 (309)
121 2d8x_A Protein pinch; LIM doma 45.4 15 0.00051 25.7 2.9 39 289-335 5-43 (70)
122 1zbd_B Rabphilin-3A; G protein 44.2 59 0.002 26.3 6.7 46 287-332 53-107 (134)
123 2kwj_A Zinc finger protein DPF 43.8 1.9 6.7E-05 34.2 -2.4 44 291-334 60-110 (114)
124 1y02_A CARP2, FYVE-ring finger 43.7 1.7 5.9E-05 35.0 -2.7 47 288-334 18-68 (120)
125 2cur_A Skeletal muscle LIM-pro 43.6 15 0.0005 25.6 2.6 38 289-334 5-42 (69)
126 2cu8_A Cysteine-rich protein 2 43.1 19 0.00066 25.6 3.3 39 289-335 9-48 (76)
127 2d8v_A Zinc finger FYVE domain 43.0 8.1 0.00028 27.4 1.0 31 287-318 6-37 (67)
128 2g6q_A Inhibitor of growth pro 42.3 7.6 0.00026 27.2 0.8 39 289-331 11-59 (62)
129 2d8z_A Four and A half LIM dom 42.0 23 0.00078 24.6 3.4 38 289-334 5-42 (70)
130 2cor_A Pinch protein; LIM doma 41.6 20 0.00067 25.9 3.1 40 288-335 14-53 (79)
131 1x64_A Alpha-actinin-2 associa 41.6 28 0.00096 25.6 4.1 40 288-335 24-63 (89)
132 3zyq_A Hepatocyte growth facto 41.4 18 0.00062 32.2 3.4 46 289-334 164-221 (226)
133 3v43_A Histone acetyltransfera 41.2 20 0.0007 28.0 3.4 42 289-330 5-62 (112)
134 1z60_A TFIIH basal transcripti 41.0 13 0.00046 25.7 1.9 40 290-329 16-58 (59)
135 1x68_A FHL5 protein; four-and- 39.6 27 0.00093 24.8 3.6 38 289-334 5-46 (76)
136 1nyp_A Pinch protein; LIM doma 39.6 17 0.00059 25.0 2.4 39 289-335 5-43 (66)
137 2jmi_A Protein YNG1, ING1 homo 38.9 7.1 0.00024 29.6 0.2 41 287-331 24-75 (90)
138 1wew_A DNA-binding family prot 37.5 14 0.00049 26.9 1.7 45 288-333 15-73 (78)
139 3mjh_B Early endosome antigen 37.4 2.7 9.1E-05 25.8 -1.9 14 289-302 5-18 (34)
140 1z2q_A LM5-1; membrane protein 37.1 11 0.00038 28.0 1.1 32 288-319 20-55 (84)
141 1vfy_A Phosphatidylinositol-3- 36.6 12 0.00042 26.9 1.2 30 289-318 11-44 (73)
142 2yw8_A RUN and FYVE domain-con 35.9 12 0.0004 27.7 1.1 31 288-318 18-52 (82)
143 1x4u_A Zinc finger, FYVE domai 35.8 12 0.00042 27.7 1.1 30 288-317 13-46 (84)
144 1joc_A EEA1, early endosomal a 35.6 11 0.00036 30.4 0.8 30 289-318 69-102 (125)
145 1v6g_A Actin binding LIM prote 35.1 30 0.001 24.9 3.2 39 289-335 15-53 (81)
146 1wyh_A SLIM 2, skeletal muscle 34.7 29 0.001 24.1 3.1 39 289-335 5-45 (72)
147 3mpx_A FYVE, rhogef and PH dom 34.6 8.3 0.00028 37.7 0.0 46 288-333 374-430 (434)
148 3t7l_A Zinc finger FYVE domain 34.5 12 0.00039 28.3 0.8 46 289-334 20-75 (90)
149 2ri7_A Nucleosome-remodeling f 34.4 6 0.0002 33.6 -0.9 45 287-332 6-59 (174)
150 3o70_A PHD finger protein 13; 34.4 7.7 0.00026 27.7 -0.2 43 288-331 18-66 (68)
151 1x4k_A Skeletal muscle LIM-pro 34.2 26 0.00091 24.4 2.7 39 289-335 5-45 (72)
152 1x4l_A Skeletal muscle LIM-pro 33.5 32 0.0011 24.0 3.1 38 289-334 5-46 (72)
153 3c6w_A P28ING5, inhibitor of g 33.2 13 0.00046 25.5 0.9 39 289-331 9-57 (59)
154 2dlo_A Thyroid receptor-intera 33.1 33 0.0011 24.6 3.2 39 288-334 14-52 (81)
155 2co8_A NEDD9 interacting prote 32.6 39 0.0013 24.4 3.5 42 287-336 13-55 (82)
156 2jne_A Hypothetical protein YF 32.2 2.9 0.0001 32.0 -2.8 41 289-334 32-72 (101)
157 2o35_A Hypothetical protein DU 32.2 16 0.00056 28.0 1.3 13 310-322 42-54 (105)
158 3fyb_A Protein of unknown func 32.0 16 0.00056 27.9 1.3 13 310-322 41-53 (104)
159 1x3h_A Leupaxin; paxillin fami 31.6 37 0.0013 24.2 3.2 39 289-335 15-53 (80)
160 2zet_C Melanophilin; complex, 30.9 76 0.0026 26.3 5.4 44 288-332 67-117 (153)
161 2xb1_A Pygopus homolog 2, B-ce 30.4 6.2 0.00021 30.8 -1.4 44 289-332 3-61 (105)
162 1dvp_A HRS, hepatocyte growth 29.8 14 0.00046 32.8 0.6 31 288-318 160-194 (220)
163 2cuq_A Four and A half LIM dom 29.6 39 0.0013 24.0 3.1 38 289-334 15-52 (80)
164 2dj7_A Actin-binding LIM prote 29.4 48 0.0017 23.8 3.5 39 288-334 14-53 (80)
165 1wd2_A Ariadne-1 protein homol 28.9 9.6 0.00033 26.5 -0.5 34 289-322 6-47 (60)
166 1wig_A KIAA1808 protein; LIM d 28.9 36 0.0012 24.0 2.7 38 289-334 5-42 (73)
167 1iml_A CRIP, cysteine rich int 28.9 34 0.0012 24.2 2.5 11 290-300 28-38 (76)
168 1x63_A Skeletal muscle LIM-pro 28.7 47 0.0016 23.7 3.4 39 289-335 15-55 (82)
169 1x6a_A LIMK-2, LIM domain kina 28.6 33 0.0011 24.6 2.5 38 289-334 15-52 (81)
170 2egq_A FHL1 protein; LIM domai 27.3 49 0.0017 23.3 3.2 39 289-335 15-58 (77)
171 1a7i_A QCRP2 (LIM1); LIM domai 26.8 23 0.0008 25.4 1.4 39 289-335 7-46 (81)
172 2l4z_A DNA endonuclease RBBP8, 26.7 28 0.00095 27.7 1.9 38 289-334 61-99 (123)
173 3kv5_D JMJC domain-containing 26.4 25 0.00086 35.2 1.9 44 291-334 38-90 (488)
174 2vpb_A Hpygo1, pygopus homolog 26.2 24 0.00082 24.8 1.2 31 287-317 6-41 (65)
175 1x61_A Thyroid receptor intera 26.1 59 0.002 22.5 3.4 38 289-334 5-44 (72)
176 1g47_A Pinch protein; LIM doma 25.6 52 0.0018 23.1 3.1 40 288-335 10-51 (77)
177 2kgg_A Histone demethylase jar 24.5 36 0.0012 22.5 1.8 40 291-330 4-52 (52)
178 1zfo_A LAsp-1; LIM domain, zin 23.0 25 0.00087 20.6 0.7 26 290-315 4-30 (31)
179 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.3 1E+02 0.0035 24.0 4.7 26 307-332 8-44 (140)
180 2jvx_A NF-kappa-B essential mo 22.2 23 0.00079 20.6 0.4 12 324-335 4-15 (28)
181 3f6q_B LIM and senescent cell 21.9 65 0.0022 22.0 3.0 41 288-336 10-52 (72)
182 2pv0_B DNA (cytosine-5)-methyl 21.8 42 0.0014 32.4 2.4 45 288-332 92-148 (386)
183 2jmo_A Parkin; IBR, E3 ligase, 21.7 9 0.00031 28.2 -1.9 19 306-326 55-73 (80)
184 2iyb_E Testin, TESS, TES; LIM 21.5 59 0.002 22.1 2.6 37 290-334 3-43 (65)
185 1wee_A PHD finger family prote 21.4 12 0.00042 26.7 -1.1 44 288-332 15-66 (72)
186 1m3v_A FLIN4, fusion of the LI 21.3 80 0.0027 24.6 3.7 47 290-336 33-82 (122)
187 2d8y_A Eplin protein; LIM doma 21.2 78 0.0027 23.1 3.4 41 288-336 14-55 (91)
188 2xqn_T Testin, TESS; metal-bin 20.6 89 0.003 24.3 3.8 45 289-335 30-75 (126)
189 1m3v_A FLIN4, fusion of the LI 20.6 78 0.0027 24.7 3.5 38 289-334 5-43 (122)
190 2xjy_A Rhombotin-2; oncoprotei 20.3 77 0.0026 24.8 3.4 48 288-335 28-78 (131)
191 2jrp_A Putative cytoplasmic pr 20.1 7.1 0.00024 29.0 -2.6 40 290-334 3-42 (81)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=1.5e-13 Score=104.88 Aligned_cols=56 Identities=32% Similarity=0.848 Sum_probs=46.7
Q ss_pred cCCCCccccccccccCC---eEEeecccccHhhHHHHHhcCCCCccccCcccCCCCCCC
Q 015350 286 DASDSTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGAS 341 (408)
Q Consensus 286 ~~~~~~C~IC~~~~~~~---~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~~~~~ 341 (408)
...+..|+||++.+..+ ..+||+|.||..|+.+|++++.+||+||+++........
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 34577999999999866 346999999999999999999999999999876544433
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=104.78 Aligned_cols=50 Identities=34% Similarity=0.904 Sum_probs=44.6
Q ss_pred CCCCccccccccccCC---eEEeecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~---~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++++..+ ..+||+|.||..|+.+|++.+.+||+||+++.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4567899999999887 6689999999999999999999999999988653
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=2.2e-13 Score=101.48 Aligned_cols=50 Identities=32% Similarity=0.832 Sum_probs=43.3
Q ss_pred CCCCccccccccccC---CeEEeecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~---~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
..+..|+||++.+.. +..+||||.||..|+.+|+.++.+||+||+++...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 456789999999854 35689999999999999999999999999998754
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.6e-13 Score=101.71 Aligned_cols=50 Identities=34% Similarity=0.812 Sum_probs=43.7
Q ss_pred CCCCccccccccccCCeEE---eecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
..+..|+||++++..+..+ ||+|.||..|+.+|++.+.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 4467899999999876544 9999999999999999999999999998654
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.37 E-value=2e-13 Score=96.90 Aligned_cols=47 Identities=43% Similarity=0.963 Sum_probs=41.9
Q ss_pred CCCccccccccccC---CeEEe-ecccccHhhHHHHHhcCCCCccccCccc
Q 015350 288 SDSTCIICREEMTT---AKKLI-CGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 288 ~~~~C~IC~~~~~~---~~~lp-C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
++..|+||++++.+ +..+| |||.||..|+.+|++++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46789999999987 56777 9999999999999999999999999864
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.37 E-value=9.2e-14 Score=109.52 Aligned_cols=49 Identities=39% Similarity=0.941 Sum_probs=43.6
Q ss_pred CCCCccccccccccC---CeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~---~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
..+..|+||++++.. +..+||||.||..|+.+|+..+.+||+||+++.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999999987 5668999999999999999999999999998864
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=103.08 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=45.4
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
.++..|+||++.+.+++.+||||.||..|+.+|+..+.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999999999999999999999999999999999999999864
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.9e-13 Score=100.02 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=45.8
Q ss_pred CCCCccccccccccCCeEE-eecccccHhhHHHHHhcCCCCccccCcccCCC
Q 015350 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (408)
.++..|+||++.+.+++.+ +|||.||..|+.+|++.+..||.||+++...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3467899999999999987 99999999999999998999999999987543
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.8e-13 Score=102.14 Aligned_cols=49 Identities=31% Similarity=0.725 Sum_probs=41.8
Q ss_pred CCCCccccccccccC--------------CeEEe-ecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTT--------------AKKLI-CGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~--------------~~~lp-C~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
.+++.|+||++++.+ +..++ |||.||..|+.+|++++.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 356789999999865 44565 99999999999999999999999998754
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.9e-13 Score=100.54 Aligned_cols=49 Identities=35% Similarity=0.780 Sum_probs=43.8
Q ss_pred CCCCccccccccccCC-------eEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
.++..|+||++.+.++ ..++|||.||..|+.+|+..+.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4577899999999876 678999999999999999999999999998753
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.33 E-value=3e-13 Score=101.19 Aligned_cols=51 Identities=33% Similarity=0.748 Sum_probs=45.0
Q ss_pred CCCCccccccccccCC-------eEEeecccccHhhHHHHHhcCCCCccccCcccCCC
Q 015350 287 ASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (408)
.++..|+||++.+.++ ..++|||.||..|+.+|++++.+||.||+++...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4567899999999876 67899999999999999999999999999987543
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32 E-value=5.4e-13 Score=94.56 Aligned_cols=47 Identities=38% Similarity=0.782 Sum_probs=41.6
Q ss_pred CCCccccccccccC----CeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 288 SDSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 288 ~~~~C~IC~~~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
++..|+||++.+.+ +..+||||.||..|+.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999999865 566799999999999999999999999999874
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.31 E-value=9.8e-13 Score=97.54 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=43.7
Q ss_pred CCCCccccccccccCC-eEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
+.+..|+||++.+.++ ..+||||.||..|+.+|++++.+||.||+++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3467899999999987 677999999999999999999999999998853
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=97.79 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=44.5
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHh---cCCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE---RQHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~---~~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.+++.+||||.||..|+.+|++ .+..||+||+++..+
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 45779999999999999999999999999999996 456899999998654
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.30 E-value=5.7e-13 Score=97.40 Aligned_cols=49 Identities=35% Similarity=0.753 Sum_probs=43.7
Q ss_pred CCCccccccccccCC-------eEEeecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 288 SDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
++..|+||++.+.++ ..++|||.||..|+.+|++++.+||.||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999999876 6789999999999999999999999999998654
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=97.87 Aligned_cols=50 Identities=28% Similarity=0.772 Sum_probs=45.0
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccCCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (408)
.++..|+||++.+.+ ..+||||.||..|+.+|+.++.+||+||+++...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 346789999999999 88999999999999999999999999999987543
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=96.10 Aligned_cols=50 Identities=24% Similarity=0.595 Sum_probs=44.4
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHh-cCCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.+|..++|||.||..|+.+|+. .+..||.||+++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 44678999999999999999999999999999994 567899999998654
No 18
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.28 E-value=3e-12 Score=105.03 Aligned_cols=49 Identities=31% Similarity=0.772 Sum_probs=41.0
Q ss_pred CCCccccccccccCCe------------------EEeecccccHhhHHHHH-----hcCCCCccccCcccCC
Q 015350 288 SDSTCIICREEMTTAK------------------KLICGHLFHVHCLRSWL-----ERQHTCPTCRALVVPP 336 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~------------------~lpC~H~Fh~~Cl~~wl-----~~~~~CP~Cr~~i~~~ 336 (408)
.++.|+||++++..+. .++|+|.||..||.+|+ ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997653 57999999999999999 4567899999988644
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=2.5e-12 Score=97.17 Aligned_cols=49 Identities=37% Similarity=0.787 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCeEEe-ecccccHhhHHHHHhcC--CCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ--HTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lp-C~H~Fh~~Cl~~wl~~~--~~CP~Cr~~i~~ 335 (408)
.++..|+||++.+.+|+.+| |||.||..|+.+|+..+ ..||.||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34678999999999999999 99999999999999765 689999997543
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.7e-12 Score=99.84 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=44.7
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
..+..|+||++.+.+|..+||||.||..|+.+|++....||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456789999999999999999999999999999999999999999885
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.26 E-value=2e-12 Score=104.52 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=41.9
Q ss_pred CCCCccccccccccCC------------------eEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 287 ASDSTCIICREEMTTA------------------KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~------------------~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
.+++.|+||++.+..+ ..++|+|.||..|+.+|+.++.+||+||+++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3578899999998755 33689999999999999999999999999864
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.24 E-value=1.5e-12 Score=110.65 Aligned_cols=47 Identities=36% Similarity=0.869 Sum_probs=43.9
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
+..|+||++.+.+|+.+||||.||..|+..|+..+.+||.||+++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 56799999999999999999999999999999999999999998853
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.24 E-value=3.4e-12 Score=97.30 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=45.2
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhc-CCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.+|+.++|||.||..|+.+|+.. +.+||.||+++...
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 457799999999999999999999999999999987 78899999988643
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.4e-12 Score=97.89 Aligned_cols=50 Identities=32% Similarity=0.621 Sum_probs=44.2
Q ss_pred CCCCccccccccccC----CeEEeecccccHhhHHHHHhcC---CCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQ---HTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~----~~~lpC~H~Fh~~Cl~~wl~~~---~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.+ ++.++|||.||..|+.+|++.+ ..||.||+++..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999998 8889999999999999999875 7899999988654
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.2e-12 Score=91.10 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=39.6
Q ss_pred cCCCCccccccccccCCeEEeecccccHhhHHHHHh---cCCCCccc
Q 015350 286 DASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE---RQHTCPTC 329 (408)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~---~~~~CP~C 329 (408)
..++..|+||++.+.+|+.+||||.||..|+.+|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 355779999999999999999999999999999997 45689998
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=95.58 Aligned_cols=50 Identities=36% Similarity=0.739 Sum_probs=45.1
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhc------CCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER------QHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~------~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.++..+||||.||..|+..|+.. ...||.||.++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 456789999999999999999999999999999977 77899999998753
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.20 E-value=2.6e-12 Score=98.12 Aligned_cols=50 Identities=28% Similarity=0.549 Sum_probs=44.6
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhc-------CCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-------QHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~-------~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.+|+.+||||.||..|+.+|+.. ...||.||.++..+
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 456789999999999999999999999999999976 56899999988653
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=9.2e-12 Score=96.16 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=44.9
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhc------CCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER------QHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~------~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.+|+.+||||.||..|+..|+.. ...||.||.++...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 456789999999999999999999999999999987 66899999988653
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=97.66 Aligned_cols=48 Identities=38% Similarity=0.800 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCeEEe-ecccccHhhHHHHHhcC--CCCccccCccc
Q 015350 287 ASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ--HTCPTCRALVV 334 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lp-C~H~Fh~~Cl~~wl~~~--~~CP~Cr~~i~ 334 (408)
.++..|+||++.+.+|+.+| |||.||..|+.+|+..+ ..||.||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45789999999999999999 99999999999999653 58999999874
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=88.06 Aligned_cols=43 Identities=33% Similarity=0.914 Sum_probs=38.4
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHH---hcCCCCccc
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWL---ERQHTCPTC 329 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl---~~~~~CP~C 329 (408)
.++..|+||++.+.+++.++|||.||..|+.+|+ +++.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999999999999999999999995 456789998
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.14 E-value=4.9e-12 Score=103.69 Aligned_cols=49 Identities=29% Similarity=0.656 Sum_probs=1.6
Q ss_pred CCCCccccccccccCCe------------------EEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAK------------------KLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~------------------~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
..++.|+||++++.++. .++|+|.||..|+.+|+..+.+||+||+++..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 35679999999997531 24899999999999999999999999998643
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=7.2e-12 Score=100.37 Aligned_cols=48 Identities=35% Similarity=0.785 Sum_probs=43.9
Q ss_pred CCCccccccccccCCeE-EeecccccHhhHHHHHhcC-CCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKK-LICGHLFHVHCLRSWLERQ-HTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~-lpC~H~Fh~~Cl~~wl~~~-~~CP~Cr~~i~~ 335 (408)
++..|+||++.+.+|+. ++|||.||..|+.+|+..+ ..||.||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 46789999999999999 8999999999999999887 699999999854
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=2.1e-11 Score=101.56 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=43.4
Q ss_pred CCCccccccccccCCeEEeecccccHhhHHHHHhcCC-CCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~-~CP~Cr~~i~~ 335 (408)
++..|+||++.+.+|+.+||||.||..|+..|+..+. .||.||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4578999999999999999999999999999997544 89999999865
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.12 E-value=1.9e-11 Score=99.18 Aligned_cols=49 Identities=27% Similarity=0.627 Sum_probs=45.0
Q ss_pred CCCCccccccccccCCeEE-eecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
.++..|+||++.+.+|..+ +|||.||..|+..|+..+..||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3467899999999999998 999999999999999999999999998864
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.11 E-value=1.7e-11 Score=97.84 Aligned_cols=48 Identities=31% Similarity=0.628 Sum_probs=44.3
Q ss_pred CCCccccccccccCCeEE-eecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
++..|+||++.+.+|+.+ +|||.||..|+.+|+..+.+||.||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999999988 899999999999999999999999998864
No 36
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.7e-11 Score=91.35 Aligned_cols=51 Identities=25% Similarity=0.632 Sum_probs=41.7
Q ss_pred CCCCcccccccccc--CCeEEeec-----ccccHhhHHHHHhcC--CCCccccCcccCCC
Q 015350 287 ASDSTCIICREEMT--TAKKLICG-----HLFHVHCLRSWLERQ--HTCPTCRALVVPPE 337 (408)
Q Consensus 287 ~~~~~C~IC~~~~~--~~~~lpC~-----H~Fh~~Cl~~wl~~~--~~CP~Cr~~i~~~~ 337 (408)
.++..|.||+++++ ++..+||+ |.||..||++|+..+ .+||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 44678999999885 34567996 999999999999765 48999999986543
No 37
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=2.1e-11 Score=86.86 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=42.2
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccCCCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~~ 338 (408)
.++..|+||++.+.+|+.+||||.||..|+.+ ....||.||+++..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecCCc
Confidence 45678999999999999999999999999977 35689999999875543
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=4.6e-11 Score=87.68 Aligned_cols=48 Identities=23% Similarity=0.606 Sum_probs=40.4
Q ss_pred CCccccccc-cccCCe----EEeecccccHhhHHHHHhc-CCCCccccCcccCC
Q 015350 289 DSTCIICRE-EMTTAK----KLICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (408)
Q Consensus 289 ~~~C~IC~~-~~~~~~----~lpC~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~~ 336 (408)
+..|+||++ .+.++. .++|||.||..|+.+|+.+ +..||.||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 787774 5799999999999999755 46799999998653
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.07 E-value=6.4e-11 Score=94.71 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
.++..|+||++.|.+|+.+||||.||+.||.+|+..+.+||.||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3568899999999999999999999999999999988999999998864
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.07 E-value=1.3e-11 Score=101.46 Aligned_cols=49 Identities=33% Similarity=0.650 Sum_probs=43.9
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhc-CCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (408)
.++..|+||++.+.+|+.++|||.||..|+.+|+.. +..||.||.++..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346789999999999999999999999999999976 6689999999863
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=3.8e-11 Score=100.66 Aligned_cols=50 Identities=34% Similarity=0.761 Sum_probs=45.1
Q ss_pred CCCCccccccccccCC-------eEEeecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.++ +.++|||.||..|+.+|++.+.+||.||+++...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567899999999887 8889999999999999999999999999988654
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.06 E-value=6.4e-11 Score=91.84 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
.++..|+||++.|.+|+.++|||.||+.||.+|+..+.+||.||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3578999999999999999999999999999999988999999998754
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=7.3e-11 Score=96.21 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=42.8
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCC---CCccccCcccCC
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH---TCPTCRALVVPP 336 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~---~CP~Cr~~i~~~ 336 (408)
...|+||++.+.+|..+||||.||..|+..|+..+. .||.||.++...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 457999999999999999999999999999998654 899999988643
No 44
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.04 E-value=1.2e-10 Score=92.74 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=45.8
Q ss_pred CCCCccccccccccCCeEEeec-ccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~-H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.|++|+.++|| |.||+.||.+|+..+.+||.||.++...
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4578999999999999999999 9999999999999888999999988643
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.04 E-value=3.1e-11 Score=105.57 Aligned_cols=48 Identities=31% Similarity=0.674 Sum_probs=43.3
Q ss_pred CCCccccccccccCCeEE-eecccccHhhHHHHHhc-CCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-pC~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (408)
++..|+||++.+.+|+.+ ||||.||..|+..|+.. +..||.||.++..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 346899999999999988 99999999999999987 7789999999854
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=3.6e-11 Score=98.85 Aligned_cols=49 Identities=29% Similarity=0.657 Sum_probs=44.4
Q ss_pred CCCccccccccccCCeEEeecccccHhhHHHHHhc-CCCCccccCcccCC
Q 015350 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~~ 336 (408)
++..|+||++.+.+|+.++|||.||..|+.+|+.. +.+||.||.++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 46789999999999999999999999999999987 67899999988653
No 47
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.02 E-value=1.2e-10 Score=84.89 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCeEE--eeccc-ccHhhHHHHHhcCCCCccccCccc
Q 015350 287 ASDSTCIICREEMTTAKKL--ICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l--pC~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
+.+..|.||++...++..+ ||||. ||..|...|.+++..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3466899999999888887 99998 999999999988889999999885
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.01 E-value=9.9e-11 Score=100.72 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=44.3
Q ss_pred CCCccccccccccCCeEEeecccccHhhHHHHHhcCC-CCccccCcccCC
Q 015350 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVPP 336 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~-~CP~Cr~~i~~~ 336 (408)
++..|+||++.+.+|+.+||||.||..|+..|+.... .||.||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4578999999999999999999999999999998754 899999998754
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.01 E-value=1.3e-10 Score=85.15 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=42.7
Q ss_pred CCCccccccccccCCeEE--eeccc-ccHhhHHHHHhcCCCCccccCccc
Q 015350 288 SDSTCIICREEMTTAKKL--ICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l--pC~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
++..|+||++...++..+ ||||. ||..|+..|.+++..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999999998877 99999 899999999998899999999884
No 50
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=6.8e-11 Score=97.54 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=44.6
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcCC-CCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~-~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.+|+.++|||.||..|+.+|+..+. +||.||.++...
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 44678999999999999999999999999999998765 999999988653
No 51
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=5.2e-10 Score=83.83 Aligned_cols=50 Identities=20% Similarity=0.587 Sum_probs=42.3
Q ss_pred CCCCccccccccccCCeEE-eecccccHhhHHHHHhcC--CCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQ--HTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-pC~H~Fh~~Cl~~wl~~~--~~CP~Cr~~i~~~ 336 (408)
+....|+||.+.+.....- .|+|.||..|+.+|++.+ .+||+||+++...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 3457899999999876554 799999999999999877 7899999988643
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=5.2e-10 Score=85.12 Aligned_cols=51 Identities=20% Similarity=0.446 Sum_probs=40.5
Q ss_pred CCCCcccccccccc--CCeEEe--ecccccHhhHHHHHh-cCCCCccccCcccCCC
Q 015350 287 ASDSTCIICREEMT--TAKKLI--CGHLFHVHCLRSWLE-RQHTCPTCRALVVPPE 337 (408)
Q Consensus 287 ~~~~~C~IC~~~~~--~~~~lp--C~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~~~ 337 (408)
.++..|+||++.+. ++..+| |||.||..|+..+.+ .+..||.||+++....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45678999999985 345555 999999999999764 4568999999987543
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=1.4e-10 Score=97.24 Aligned_cols=51 Identities=33% Similarity=0.746 Sum_probs=45.0
Q ss_pred cCCCCccccccccccCC-------eEEeecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 286 DASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 286 ~~~~~~C~IC~~~~~~~-------~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
.+++..|+||++.+.++ +.++|||.||..|+.+|++.+.+||+||.++...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 35677899999999875 6789999999999999999999999999998653
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=2.7e-10 Score=111.46 Aligned_cols=48 Identities=38% Similarity=0.751 Sum_probs=44.0
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHh-cCCCCccccCcccCC
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~-~~~~CP~Cr~~i~~~ 336 (408)
...|+||++.+.+++.+||||.||..|+.+|+. .+.+||.||+++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 368999999999999999999999999999998 688999999998653
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.92 E-value=1.9e-10 Score=97.81 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=43.8
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcCC-CCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~-~CP~Cr~~i~~ 335 (408)
.++..|+||++.+.+|+.++|||.||..|+.+|+.... +||.||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45678999999999999999999999999999998654 89999998754
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=8.6e-10 Score=104.17 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=43.6
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhc-CCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (408)
.....|+||++.|.+|+.+||||.||..||.+|+.. +.+||.||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 357789999999999999999999999999999976 4459999998854
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=4.1e-10 Score=92.67 Aligned_cols=46 Identities=22% Similarity=0.501 Sum_probs=42.1
Q ss_pred CCCccccccccccCCeEE-eecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
++..|+||++.+.+|+.+ +|||.||..|+..|+. ..||.||.++..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 467899999999999999 9999999999999997 789999998853
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.84 E-value=3.6e-10 Score=85.16 Aligned_cols=44 Identities=25% Similarity=0.628 Sum_probs=39.9
Q ss_pred CCCccccccccccCCeEEeeccc-ccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
++..|+||++.+.++..+||||. ||..|+..| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 35689999999999999999999 999999988 789999998853
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=3e-09 Score=78.66 Aligned_cols=47 Identities=23% Similarity=0.632 Sum_probs=40.9
Q ss_pred ccCCCCccccccccccCCeEEeeccc-ccHhhHHHHHhcCCCCccccCcccC
Q 015350 285 LDASDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 285 ~~~~~~~C~IC~~~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...++..|.||++...++..+||||. ||..|+.. ...||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34557789999999999999999999 99999974 5789999998865
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.5e-09 Score=85.64 Aligned_cols=48 Identities=31% Similarity=0.611 Sum_probs=41.5
Q ss_pred CCCCccccccccccCCeEEe-ecccccHhhHHHHHhcC------CCCcc--ccCc-cc
Q 015350 287 ASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ------HTCPT--CRAL-VV 334 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lp-C~H~Fh~~Cl~~wl~~~------~~CP~--Cr~~-i~ 334 (408)
..+..|+||++.|.+|+.+| |||.||+.||.+|+..+ .+||. |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 34678999999999999996 99999999999999753 48999 9866 54
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=8e-10 Score=83.47 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=38.8
Q ss_pred CCCccccccccccCCeEEeeccc-ccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
++..|+||++.+.+++.+||||. ||..|+.. ...||+||+++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 35679999999999999999999 99999964 4789999998864
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.71 E-value=2.1e-09 Score=94.48 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcC-CCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~-~~CP~Cr~~i~~ 335 (408)
.....|+||.+.|.+|+.+||||.||..||..|+..+ .+||.||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3467899999999999999999999999999999764 579999998754
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=3.1e-09 Score=93.24 Aligned_cols=50 Identities=26% Similarity=0.570 Sum_probs=44.2
Q ss_pred CCCCccccccccccCCeEEeecccccHhhHHHHHhcC-CCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~-~~CP~Cr~~i~~~ 336 (408)
.++..|+||++.+.+|+.++|||.||..|+.+|+..+ .+||.||.++...
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4467899999999999999999999999999999764 4999999988653
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.59 E-value=1.4e-08 Score=96.53 Aligned_cols=49 Identities=24% Similarity=0.565 Sum_probs=39.0
Q ss_pred CCCCccccccccccCCeE--------EeecccccHhhHHHHHhcC-----------CCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKK--------LICGHLFHVHCLRSWLERQ-----------HTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~--------lpC~H~Fh~~Cl~~wl~~~-----------~~CP~Cr~~i~~ 335 (408)
+...+|+||++.+.+... .+|||.||..|+.+|+.+. .+||.||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456789999998876322 2699999999999999652 369999998864
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.57 E-value=1.3e-08 Score=73.52 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=44.0
Q ss_pred CCccccccccccCCeEE-eecccccHhhHHHHHhcCCCCccccCcccCCC
Q 015350 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-pC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (408)
...|+||.+.|++|+.+ +|||.|+++||.+|+.++.+||.++.++...+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 46799999999999999 89999999999999988889999999886543
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.57 E-value=1e-08 Score=78.16 Aligned_cols=43 Identities=30% Similarity=0.678 Sum_probs=38.7
Q ss_pred CCccccccccccCCeEEeeccc-ccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
+..|+||++...++..+||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4589999999999999999999 999999876 499999999864
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=6e-08 Score=94.23 Aligned_cols=44 Identities=30% Similarity=0.768 Sum_probs=40.1
Q ss_pred CCCccccccccccCCeEEeeccc-ccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~-Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
++..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 46789999999999999999999 999999987 789999998853
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.49 E-value=9e-08 Score=88.26 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=42.1
Q ss_pred CCCccccccccccCCeEE-eecccccHhhHHHHHhcC--CCCcc--ccCcccC
Q 015350 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQ--HTCPT--CRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-pC~H~Fh~~Cl~~wl~~~--~~CP~--Cr~~i~~ 335 (408)
.+..|+||++.|.+|+.. .|||.||+.||..|++.+ .+||. ||+.+..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 467899999999999986 999999999999999764 46999 9998754
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.48 E-value=6.3e-08 Score=69.55 Aligned_cols=48 Identities=29% Similarity=0.696 Sum_probs=38.9
Q ss_pred CCCCccccccccccCCeEEeec--c---cccHhhHHHHHhc--CCCCccccCccc
Q 015350 287 ASDSTCIICREEMTTAKKLICG--H---LFHVHCLRSWLER--QHTCPTCRALVV 334 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC~--H---~Fh~~Cl~~wl~~--~~~CP~Cr~~i~ 334 (408)
+++..|.||+++..++..+||. | .||..|+.+|+.. +.+||+||.+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999987666667865 4 7999999999964 678999998764
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.33 E-value=1.3e-07 Score=74.30 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=37.2
Q ss_pred CCCccccccccccCCeEE---eecccccHhhHHHHHhc--------CCCCcc--ccCc
Q 015350 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER--------QHTCPT--CRAL 332 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~--------~~~CP~--Cr~~ 332 (408)
+...|+||++++..+..+ +|||.||..|+..+++. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999999887654 69999999999998753 236999 9987
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.91 E-value=4.3e-06 Score=65.07 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=36.8
Q ss_pred ccccccccccC-CeEEeecccccHhhHHHHHhc-CCCCccccCcccC
Q 015350 291 TCIICREEMTT-AKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (408)
Q Consensus 291 ~C~IC~~~~~~-~~~lpC~H~Fh~~Cl~~wl~~-~~~CP~Cr~~i~~ 335 (408)
-|.+|--.+.. ++.+||+|.||.+|...|.++ .++||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47788776654 466799999999999999854 6889999999864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.68 E-value=3.1e-05 Score=71.23 Aligned_cols=48 Identities=21% Similarity=0.593 Sum_probs=40.1
Q ss_pred CCccccccccccCCeEEe-ecccccHhhHHHHHhcCC--CCccccCcccCC
Q 015350 289 DSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQH--TCPTCRALVVPP 336 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lp-C~H~Fh~~Cl~~wl~~~~--~CP~Cr~~i~~~ 336 (408)
-..|.||.+....+.+-+ |+|.||..|+..|++.+. .||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 567999999998876654 999999999999997644 899999987543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.53 E-value=0.0029 Score=48.34 Aligned_cols=47 Identities=23% Similarity=0.513 Sum_probs=38.8
Q ss_pred CCccccccccccCCeEEeec-ccccHhhHHHHHhcCCCCccccCcccCCC
Q 015350 289 DSTCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~-H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~~ 337 (408)
..-|..|+-..+ ..+.|. |..|..|+...+..+..||+|..+++..-
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 457999997644 456675 99999999999999999999999997543
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=94.30 E-value=0.049 Score=58.84 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=44.3
Q ss_pred CCCccccccccccCCeEEeec-ccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 288 SDSTCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~-H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
++..|+|-.+.|.+|+.+|.| +.+-+.+|.+|+.++.+||.=|.++...
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 467899999999999999998 5899999999999999999999988643
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.57 E-value=0.022 Score=44.53 Aligned_cols=31 Identities=23% Similarity=0.605 Sum_probs=26.2
Q ss_pred CCCcccccccc-ccCCeE--EeecccccHhhHHH
Q 015350 288 SDSTCIICREE-MTTAKK--LICGHLFHVHCLRS 318 (408)
Q Consensus 288 ~~~~C~IC~~~-~~~~~~--lpC~H~Fh~~Cl~~ 318 (408)
++..|.||.++ ..+++. ++|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 35689999986 567776 79999999999998
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.42 E-value=0.067 Score=38.55 Aligned_cols=44 Identities=25% Similarity=0.529 Sum_probs=31.6
Q ss_pred CCCCccccccccccCCeEE---eecccccHhhHHHHHhcC----CCCccccCcc
Q 015350 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQ----HTCPTCRALV 333 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~~----~~CP~Cr~~i 333 (408)
..+..|.+|.+. ...+ .|...||..|+++.+... -.||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999864 2344 477899999999877553 3599997543
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.64 E-value=0.11 Score=38.75 Aligned_cols=32 Identities=31% Similarity=0.689 Sum_probs=23.8
Q ss_pred CCCCccccccccccCCeEEe---ecccccHhhHHHH
Q 015350 287 ASDSTCIICREEMTTAKKLI---CGHLFHVHCLRSW 319 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~w 319 (408)
..|+.|.||-. +.....+| |+-.||..|+++-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 46889999963 23444555 6789999999995
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.92 E-value=1.9 Score=32.47 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=34.6
Q ss_pred CCCccccccccccCC----eEE---eecccccHhhHHH-HHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTA----KKL---ICGHLFHVHCLRS-WLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~----~~l---pC~H~Fh~~Cl~~-wl~~~~~CP~Cr~~i~~ 335 (408)
....|.||-|+.-.. ... .|+--.|+.|..- .-+.++.||.|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 457899999986432 122 4666789999965 33568899999887753
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.78 E-value=0.76 Score=33.89 Aligned_cols=36 Identities=25% Similarity=0.599 Sum_probs=30.8
Q ss_pred CCCCccccccccccCCeEEee----cccccHhhHHHHHhc
Q 015350 287 ASDSTCIICREEMTTAKKLIC----GHLFHVHCLRSWLER 322 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC----~H~Fh~~Cl~~wl~~ 322 (408)
.....|.+|.|.+++.-.+.| +|.||..|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 446789999999999887877 599999999998865
No 80
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.55 E-value=0.53 Score=35.81 Aligned_cols=44 Identities=27% Similarity=0.729 Sum_probs=31.0
Q ss_pred cCCCCccccccccccCCeEEe---ecccccHhhHHHHHhcC----CCCccccCc
Q 015350 286 DASDSTCIICREEMTTAKKLI---CGHLFHVHCLRSWLERQ----HTCPTCRAL 332 (408)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~wl~~~----~~CP~Cr~~ 332 (408)
+.+++.|.+|.+. ...+- |.-.||..|+.+=+... -.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3557789999975 34554 55679999998765442 259999754
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.40 E-value=0.26 Score=34.71 Aligned_cols=44 Identities=30% Similarity=0.764 Sum_probs=30.2
Q ss_pred cCCCCccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCccccCc
Q 015350 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (408)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (408)
+.++..|.+|.+. ...+ .|...||..|+.+=+.. .-.||.|+..
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3457789999863 2334 47778999999864433 2359999754
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.91 E-value=0.51 Score=41.00 Aligned_cols=43 Identities=28% Similarity=0.723 Sum_probs=30.7
Q ss_pred CCCccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCccccCcc
Q 015350 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALV 333 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~~i 333 (408)
+++.|.+|.+. +..+ .|...||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999865 3344 36778999999876654 23599998644
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.50 E-value=0.28 Score=36.06 Aligned_cols=49 Identities=18% Similarity=0.387 Sum_probs=32.8
Q ss_pred CCCCccccccccccCCeEEe---ecccccHhhHHHHHhc----CCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLI---CGHLFHVHCLRSWLER----QHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~i~~ 335 (408)
.++..|.+|.........+. |.--||..|+..-... .-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34456999987754434554 6678999999754332 3359999876643
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.05 E-value=0.61 Score=32.78 Aligned_cols=43 Identities=23% Similarity=0.743 Sum_probs=30.1
Q ss_pred CCCCccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCccccCc
Q 015350 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (408)
..+..|.+|.+. ...+ .|...||..|+..-+.. .-.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999874 3455 36668999999875433 2359999653
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.51 E-value=0.39 Score=42.67 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=31.3
Q ss_pred CCCCccccccccccCCeEE---eecccccHhhHHHHHhcC----CCCccccCcc
Q 015350 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQ----HTCPTCRALV 333 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~~----~~CP~Cr~~i 333 (408)
..++.|.+|.+. +..+ .|...||..|+.+-+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456789999854 2344 367789999998766542 3599997643
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.27 E-value=0.56 Score=31.53 Aligned_cols=41 Identities=34% Similarity=0.912 Sum_probs=27.8
Q ss_pred ccccccccccCCeEEe---ecccccHhhHHHHHhc----CCCCccccC
Q 015350 291 TCIICREEMTTAKKLI---CGHLFHVHCLRSWLER----QHTCPTCRA 331 (408)
Q Consensus 291 ~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (408)
.|.+|.+.-.....+- |...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888987654444553 6678999999764433 224999964
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=77.73 E-value=0.17 Score=35.58 Aligned_cols=46 Identities=26% Similarity=0.777 Sum_probs=31.7
Q ss_pred CCCCccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~~i~~ 335 (408)
..+..|.+|.+. +..+ .|...||..|+.+=+.. .-.||.|+.....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 356789999874 3344 46778999999864433 2349999765543
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.37 E-value=0.23 Score=34.35 Aligned_cols=43 Identities=28% Similarity=0.829 Sum_probs=29.3
Q ss_pred cCCCCccccccccccCCeEE---eecccccHhhHHHHHhcC----CCCccccC
Q 015350 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQ----HTCPTCRA 331 (408)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~~----~~CP~Cr~ 331 (408)
..++..|.+|.+. ...+ .|...||..|+.+=+... -.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3457789999875 3344 467789999998644332 24888854
No 89
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.87 E-value=0.57 Score=35.61 Aligned_cols=47 Identities=19% Similarity=0.569 Sum_probs=32.7
Q ss_pred CCCccccccccccC--CeEE---eecccccHhhHHHHHh--------cCCCCccccCccc
Q 015350 288 SDSTCIICREEMTT--AKKL---ICGHLFHVHCLRSWLE--------RQHTCPTCRALVV 334 (408)
Q Consensus 288 ~~~~C~IC~~~~~~--~~~l---pC~H~Fh~~Cl~~wl~--------~~~~CP~Cr~~i~ 334 (408)
.+..|.+|.+.-.. ...+ .|...||..|+.+=+. ..-.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46789999876432 3444 4778899999987543 2346999976554
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.46 E-value=1.1 Score=34.25 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=31.5
Q ss_pred CCCCccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCccccCc
Q 015350 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (408)
.++..|.||.+.-.....+ .|...||..|+.+=+.. .-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4466899998765444444 46778999999754433 2349999754
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=69.27 E-value=0.82 Score=32.64 Aligned_cols=42 Identities=26% Similarity=0.744 Sum_probs=29.2
Q ss_pred CCCCccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCccccC
Q 015350 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (408)
..+..|.+|.+. ...+ .|...||..|+.+=+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999874 3344 46678999999864433 234999964
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.87 E-value=1.1 Score=35.51 Aligned_cols=44 Identities=25% Similarity=0.705 Sum_probs=30.2
Q ss_pred CCCCccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCcccc
Q 015350 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCR 330 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr 330 (408)
.+++.|.+|.+.-+....+ .|+..||..|+...... .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4577899998875433334 57889999999876542 23477664
No 93
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=68.74 E-value=2.5 Score=36.78 Aligned_cols=41 Identities=24% Similarity=0.686 Sum_probs=28.7
Q ss_pred CCccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCccccCc
Q 015350 289 DSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (408)
++.|.+|.+.- ..+ .|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 56799998652 344 46678999999765533 2359999765
No 94
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.21 E-value=1 Score=31.74 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=30.1
Q ss_pred CCCCccccccccccC-CeEE---eecccccHhhHHHHHh-----cCCCCccccC
Q 015350 287 ASDSTCIICREEMTT-AKKL---ICGHLFHVHCLRSWLE-----RQHTCPTCRA 331 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~-~~~l---pC~H~Fh~~Cl~~wl~-----~~~~CP~Cr~ 331 (408)
+++..|++|.....+ ...+ .|..-||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456789999988753 3344 4666799999854221 2346999975
No 95
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=65.75 E-value=4.7 Score=29.12 Aligned_cols=42 Identities=24% Similarity=0.676 Sum_probs=27.2
Q ss_pred CCCccccccccccCCeEEe-----ec-ccccHhhHHHHHhc----CCCCccccCcc
Q 015350 288 SDSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRALV 333 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lp-----C~-H~Fh~~Cl~~wl~~----~~~CP~Cr~~i 333 (408)
+...| +|.+... ...+. |. .-||..|+. +.. .-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8988543 44553 55 579999996 433 23599997643
No 96
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.73 E-value=2.2 Score=33.03 Aligned_cols=41 Identities=20% Similarity=0.519 Sum_probs=28.0
Q ss_pred CccccccccccCCeEEe---ecccccHhhHHHHHhc---CCCCccccC
Q 015350 290 STCIICREEMTTAKKLI---CGHLFHVHCLRSWLER---QHTCPTCRA 331 (408)
Q Consensus 290 ~~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~wl~~---~~~CP~Cr~ 331 (408)
..| ||.........+. |.--||..|+..=... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 8987766666665 6678999998653222 235999963
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=62.10 E-value=1.5 Score=33.22 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCCCccccccccc--cCCeEE---eecccccHhhHHHHH--hcCCCCccccCccc
Q 015350 287 ASDSTCIICREEM--TTAKKL---ICGHLFHVHCLRSWL--ERQHTCPTCRALVV 334 (408)
Q Consensus 287 ~~~~~C~IC~~~~--~~~~~l---pC~H~Fh~~Cl~~wl--~~~~~CP~Cr~~i~ 334 (408)
.++..|.||.+.- .....+ .|.-.||..|+..-. +..-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 4577899998764 222444 466689999997532 12335999976543
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=61.26 E-value=4.2 Score=33.70 Aligned_cols=43 Identities=28% Similarity=0.585 Sum_probs=30.5
Q ss_pred cCCCCccccccccccCCeEE---eecccccHhhHHHHHh-----------cCCCCccccC
Q 015350 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLE-----------RQHTCPTCRA 331 (408)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~-----------~~~~CP~Cr~ 331 (408)
+..++.|.+|.+.- ..+ .|...||..|+.+=+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45578899998753 344 4677899999996542 1346999964
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.20 E-value=1.8 Score=30.61 Aligned_cols=47 Identities=26% Similarity=0.658 Sum_probs=31.5
Q ss_pred CCCCcccccccccc--CCeEE---eecccccHhhHHHHHh-------cCCCCccccCcc
Q 015350 287 ASDSTCIICREEMT--TAKKL---ICGHLFHVHCLRSWLE-------RQHTCPTCRALV 333 (408)
Q Consensus 287 ~~~~~C~IC~~~~~--~~~~l---pC~H~Fh~~Cl~~wl~-------~~~~CP~Cr~~i 333 (408)
.++..|.+|.+... ....+ .|.-.||..|+.+=+. ..-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45678999997643 23444 4777899999986332 234699996543
No 100
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.90 E-value=9 Score=28.51 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=32.0
Q ss_pred CCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
....|.-|.+.+.......-+..||..|. .|-.|+.++..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccCC--------ccCCCCCCCCC
Confidence 45689999998876555677888999984 79999988864
No 101
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=59.55 E-value=1.3 Score=32.69 Aligned_cols=41 Identities=34% Similarity=0.841 Sum_probs=26.7
Q ss_pred ccccccccccCCeEEe---ecccccHhhHHHHHhc----C-CCCccccC
Q 015350 291 TCIICREEMTTAKKLI---CGHLFHVHCLRSWLER----Q-HTCPTCRA 331 (408)
Q Consensus 291 ~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~wl~~----~-~~CP~Cr~ 331 (408)
.|.+|.+.-.....+- |...||..|+.+-+.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4666665544445554 6678999999875543 2 35999975
No 102
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.36 E-value=5.3 Score=30.39 Aligned_cols=41 Identities=24% Similarity=0.691 Sum_probs=26.1
Q ss_pred CCccccccccccCCeEEe-----ec-ccccHhhHHHHHhc----CCCCccccCcc
Q 015350 289 DSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRALV 333 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lp-----C~-H~Fh~~Cl~~wl~~----~~~CP~Cr~~i 333 (408)
...| +|.+... ...+. |. .-||..|+. +.. .-.||.|+..-
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4456 9988643 33443 55 579999996 333 33599997643
No 103
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=59.36 E-value=2.9 Score=36.26 Aligned_cols=45 Identities=20% Similarity=0.444 Sum_probs=31.3
Q ss_pred CCccccccccccCCe----EEe---ecccccHhhHHHH------Hh-----cCCCCccccCcc
Q 015350 289 DSTCIICREEMTTAK----KLI---CGHLFHVHCLRSW------LE-----RQHTCPTCRALV 333 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~----~lp---C~H~Fh~~Cl~~w------l~-----~~~~CP~Cr~~i 333 (408)
+..|+||...+.+.. .+. |..-||..|..-= +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 467999998887654 454 6677999998421 11 146899998653
No 104
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=58.81 E-value=7.5 Score=30.51 Aligned_cols=44 Identities=20% Similarity=0.595 Sum_probs=29.6
Q ss_pred CCCCccccccccccCCeEEe-----ecccccHhhHHHHHhcC----CCCccccCcccC
Q 015350 287 ASDSTCIICREEMTTAKKLI-----CGHLFHVHCLRSWLERQ----HTCPTCRALVVP 335 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lp-----C~H~Fh~~Cl~~wl~~~----~~CP~Cr~~i~~ 335 (408)
.+++.|.+|.+. +..+- |...||..|+. +... -.||.|+..+..
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 456789999843 44554 55789999997 5432 249988765543
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=58.08 E-value=1.8 Score=34.37 Aligned_cols=41 Identities=34% Similarity=0.737 Sum_probs=27.4
Q ss_pred ccccccccccC-CeEE---eecccccHhhHHHHHhc----CCCCccccC
Q 015350 291 TCIICREEMTT-AKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (408)
Q Consensus 291 ~C~IC~~~~~~-~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (408)
.|.+|.+.-.+ ...+ .|...||..|+.+-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788764322 3344 47789999999775544 235999974
No 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=56.69 E-value=5.8 Score=38.16 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCccccccccccCCeEE-eecccccHhh--HHHHHhc--CCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKKL-ICGHLFHVHC--LRSWLER--QHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-pC~H~Fh~~C--l~~wl~~--~~~CP~Cr~~i~ 334 (408)
...|++-...+..|.+- .|.|.-|.+- +....++ .-.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 57899999999988775 7999844433 3332222 346999998874
No 107
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.33 E-value=2.8 Score=30.89 Aligned_cols=43 Identities=26% Similarity=0.754 Sum_probs=28.6
Q ss_pred CCccccccccccCCeEE---eecccccHhhHHHHHhc-----CCCCccccC
Q 015350 289 DSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER-----QHTCPTCRA 331 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (408)
+..|.+|...-.....+ .|...||..|+.+=+.. .-.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34788888654455555 46778999999854432 235888864
No 108
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=55.15 E-value=6.5 Score=37.70 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=31.8
Q ss_pred CCccccccccccCCeEE-eecccccHh--hHHHHHhc--CCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKKL-ICGHLFHVH--CLRSWLER--QHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-pC~H~Fh~~--Cl~~wl~~--~~~CP~Cr~~i~ 334 (408)
...|++-...+..|.+- .|.|.=|.+ =.....++ .-.||.|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 46799999999888774 799984433 33332233 346999998875
No 109
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.44 E-value=5.1 Score=29.14 Aligned_cols=45 Identities=27% Similarity=0.601 Sum_probs=29.4
Q ss_pred CCCccccccccccCCeEEe---ecccccHhhHHHH---------HhcCCCCccccCcc
Q 015350 288 SDSTCIICREEMTTAKKLI---CGHLFHVHCLRSW---------LERQHTCPTCRALV 333 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~w---------l~~~~~CP~Cr~~i 333 (408)
....| +|.........+. |..-||..|+.-- ......||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 34556 8988766444554 6677999998421 12456799997643
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=52.98 E-value=3.2 Score=37.19 Aligned_cols=42 Identities=33% Similarity=0.787 Sum_probs=24.2
Q ss_pred CccccccccccCCeEE---eecccccHhhHHHHHhc-----CCCCccccC
Q 015350 290 STCIICREEMTTAKKL---ICGHLFHVHCLRSWLER-----QHTCPTCRA 331 (408)
Q Consensus 290 ~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (408)
..|.+|.+.-.....+ .|...||..|+.+=+.. .-.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3577887643333444 47778999999864432 235999965
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=52.93 E-value=6.9 Score=31.82 Aligned_cols=44 Identities=27% Similarity=0.586 Sum_probs=29.8
Q ss_pred cCCCCccccccccccCCeEE---eecccccHhhHHHHH------h-----cCCCCccccCc
Q 015350 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWL------E-----RQHTCPTCRAL 332 (408)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl------~-----~~~~CP~Cr~~ 332 (408)
+..++.|.+|.+. +..+ .|-..||.+|+.+-+ + ..-.|+.|+.+
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3556789999875 2233 467889999999742 1 12469999643
No 112
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=51.75 E-value=4.2 Score=28.27 Aligned_cols=39 Identities=26% Similarity=0.759 Sum_probs=25.4
Q ss_pred CCccccccccccCCeEEe-----ec-ccccHhhHHHHHhc----CCCCccccC
Q 015350 289 DSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRA 331 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lp-----C~-H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (408)
...| ||.+.-. +..+. |. .-||..|+. +.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 8988643 45554 44 469999997 433 235999964
No 113
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.03 E-value=12 Score=27.05 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
....|.-|.+.+.......-+..||..|. .|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 45689999998876555567788999985 6889988875
No 114
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.82 E-value=15 Score=26.89 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=28.4
Q ss_pred CCCcccccccccc-CCeEEe---ecccccHhhHHHHHh-----cCCCCccccCcc
Q 015350 288 SDSTCIICREEMT-TAKKLI---CGHLFHVHCLRSWLE-----RQHTCPTCRALV 333 (408)
Q Consensus 288 ~~~~C~IC~~~~~-~~~~lp---C~H~Fh~~Cl~~wl~-----~~~~CP~Cr~~i 333 (408)
+...| ||..... ....+. |..-||..|+.--.. ..-.||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34456 8988764 334454 666799999842111 244699997654
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=48.64 E-value=3.2 Score=29.90 Aligned_cols=41 Identities=34% Similarity=0.848 Sum_probs=26.6
Q ss_pred ccccccccccCCeEEe---ecccccHhhHHHHHhc-----CCCCccccC
Q 015350 291 TCIICREEMTTAKKLI---CGHLFHVHCLRSWLER-----QHTCPTCRA 331 (408)
Q Consensus 291 ~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (408)
.|.+|...-.....+- |...||..|+.+=+.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4667775444445554 6678999999854432 235888864
No 116
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=47.57 E-value=4.2 Score=31.96 Aligned_cols=42 Identities=26% Similarity=0.717 Sum_probs=27.8
Q ss_pred ccccccccccCCeEEe---ecccccHhhHHHHHhc----CCCCccccCc
Q 015350 291 TCIICREEMTTAKKLI---CGHLFHVHCLRSWLER----QHTCPTCRAL 332 (408)
Q Consensus 291 ~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (408)
.|.+|.+.-.+...+. |...||..|+.+=+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 4667776654445564 6778999999864433 2359988654
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=46.88 E-value=2.1 Score=32.37 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=32.6
Q ss_pred CCCccccccccccCCeE----EeecccccHhhHHHHH-------hcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWL-------ERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~wl-------~~~~~CP~Cr~~i~~ 335 (408)
+...|.+|...|..-.. -.||++||..|..... +....|-.|...+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 45589999998875432 2699999999976532 112358888766653
No 118
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.46 E-value=4 Score=29.51 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=30.3
Q ss_pred CCCCccccccccc--cCCeEE---eecccccHhhHHHHH--hcCCCCccccCc
Q 015350 287 ASDSTCIICREEM--TTAKKL---ICGHLFHVHCLRSWL--ERQHTCPTCRAL 332 (408)
Q Consensus 287 ~~~~~C~IC~~~~--~~~~~l---pC~H~Fh~~Cl~~wl--~~~~~CP~Cr~~ 332 (408)
.++..|.||.+.- .....+ .|.-.||..|+..-. +..-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4467899998763 333444 477789999997532 123359988653
No 119
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=46.35 E-value=3.5 Score=32.17 Aligned_cols=28 Identities=25% Similarity=0.642 Sum_probs=17.6
Q ss_pred CeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 302 AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 302 ~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
++...||+.|. .-+.....||.|+.+-.
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 34445888881 22344567999987654
No 120
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.66 E-value=4.2 Score=38.30 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=32.5
Q ss_pred CCCCccccccccccCCeEE----eec--ccccHhhHHHHHhcCCCCccccCc
Q 015350 287 ASDSTCIICREEMTTAKKL----ICG--HLFHVHCLRSWLERQHTCPTCRAL 332 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l----pC~--H~Fh~~Cl~~wl~~~~~CP~Cr~~ 332 (408)
.....|++|-..-...... .=| |..|.-|-.+|-.....||.|-.+
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567999998865433221 122 567788888998888899999654
No 121
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.41 E-value=15 Score=25.66 Aligned_cols=39 Identities=21% Similarity=0.499 Sum_probs=29.4
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|.-|.+.+.......-+..+|.+|. .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecceEEEECcccccccCC--------EeCCCCCcCCC
Confidence 4579999888876555566778898884 68889887764
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.25 E-value=59 Score=26.34 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=28.0
Q ss_pred CCCCcccccccccc--CC-eE--EeecccccHhhHHHHHhc----CCCCccccCc
Q 015350 287 ASDSTCIICREEMT--TA-KK--LICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (408)
Q Consensus 287 ~~~~~C~IC~~~~~--~~-~~--lpC~H~Fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (408)
.++..|.+|...+. .+ .. ..|+|.+|.+|-..--.+ .-.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 34678999999883 22 22 258899999885421111 1138888653
No 123
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.81 E-value=1.9 Score=34.23 Aligned_cols=44 Identities=25% Similarity=0.636 Sum_probs=29.5
Q ss_pred ccccccccccCCeEE---eecccccHhhHHHHHhc----CCCCccccCccc
Q 015350 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALVV 334 (408)
Q Consensus 291 ~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~----~~~CP~Cr~~i~ 334 (408)
.|.+|.+.-.....+ .|...||..|+.+=+.. .-.||.|+....
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 577887765455555 46778999999864433 224999876543
No 124
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.72 E-value=1.7 Score=34.98 Aligned_cols=47 Identities=17% Similarity=0.452 Sum_probs=30.8
Q ss_pred CCCccccccccccCCeE----EeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
+...|..|...|..-.. -.||.+||..|..........|-.|...+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~~ 68 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRA 68 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHHh
Confidence 34689999998864321 269999999997665555667888865443
No 125
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.64 E-value=15 Score=25.63 Aligned_cols=38 Identities=24% Similarity=0.632 Sum_probs=28.5
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|.-|.+.+.......-+..||..|. .|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEEECccccccCcC--------EECCCCCCCC
Confidence 4579999888765555566778888884 6888988875
No 126
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.11 E-value=19 Score=25.55 Aligned_cols=39 Identities=31% Similarity=0.629 Sum_probs=29.8
Q ss_pred CCccccccccccCC-eEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|+.|.+.+... ....-+..+|..|. .|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC--------CCCCCCCccCC
Confidence 46899999988744 34456778998884 79999888864
No 127
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=42.96 E-value=8.1 Score=27.36 Aligned_cols=31 Identities=32% Similarity=0.722 Sum_probs=21.9
Q ss_pred CCCCccccccccccCCeEEee-cccccHhhHHH
Q 015350 287 ASDSTCIICREEMTTAKKLIC-GHLFHVHCLRS 318 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lpC-~H~Fh~~Cl~~ 318 (408)
++..-|.||.++- .-+.+.| +-.||..|.++
T Consensus 6 ee~pWC~ICneDA-tlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 6 SGLPWCCICNEDA-TLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCSSCTTTCSCC-CEEETTTTSEEECSSHHHH
T ss_pred cCCCeeEEeCCCC-eEEecCCCCceehHHHHHH
Confidence 3456799999982 2233456 67899999877
No 128
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=42.30 E-value=7.6 Score=27.16 Aligned_cols=39 Identities=28% Similarity=0.790 Sum_probs=25.5
Q ss_pred CCccccccccccCCeEEe-----ec-ccccHhhHHHHHhc----CCCCccccC
Q 015350 289 DSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRA 331 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lp-----C~-H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (408)
...| +|.+.. .+..+. |. .-||..|+. +.. .-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4456 998863 345554 54 679999996 322 335999965
No 129
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.99 E-value=23 Score=24.61 Aligned_cols=38 Identities=26% Similarity=0.678 Sum_probs=28.9
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|.-|.+.+.......-+..+|..|. .|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEECccccCCCCC--------ccCCCCCcCC
Confidence 4579999988876554556778998884 6888988874
No 130
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.63 E-value=20 Score=25.91 Aligned_cols=40 Identities=13% Similarity=0.375 Sum_probs=30.4
Q ss_pred CCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
....|.-|.+.+.......-+..+|..| .+|..|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCC
Confidence 3568999999887544445678899888 479999888864
No 131
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.59 E-value=28 Score=25.59 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=31.0
Q ss_pred CCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
....|.-|.+.+.......-+..||..|. .|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecccEEEECCceECccCC--------EecCCCCCCCC
Confidence 35679999998876555567788999984 69999888754
No 132
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.45 E-value=18 Score=32.17 Aligned_cols=46 Identities=20% Similarity=0.558 Sum_probs=30.7
Q ss_pred CCccccccccccCCeE----EeecccccHhhHHHHHh--------cCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRSWLE--------RQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~wl~--------~~~~CP~Cr~~i~ 334 (408)
+..|.+|...|..-.. -.||++||..|...... ....|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 5689999998864422 25999999999764321 1234777765553
No 133
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=41.23 E-value=20 Score=27.99 Aligned_cols=42 Identities=21% Similarity=0.518 Sum_probs=26.6
Q ss_pred CCcccccccccc-----CC-eEE---eecccccHhhHHH------HH-hcCCCCcccc
Q 015350 289 DSTCIICREEMT-----TA-KKL---ICGHLFHVHCLRS------WL-ERQHTCPTCR 330 (408)
Q Consensus 289 ~~~C~IC~~~~~-----~~-~~l---pC~H~Fh~~Cl~~------wl-~~~~~CP~Cr 330 (408)
...|.+|...-. .+ ..+ .|+..||..|+.. -+ ...-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 567999987531 12 233 4889999999952 11 2344577775
No 134
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=41.03 E-value=13 Score=25.72 Aligned_cols=40 Identities=28% Similarity=0.696 Sum_probs=28.6
Q ss_pred CccccccccccCCeEE---eecccccHhhHHHHHhcCCCCccc
Q 015350 290 STCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQHTCPTC 329 (408)
Q Consensus 290 ~~C~IC~~~~~~~~~l---pC~H~Fh~~Cl~~wl~~~~~CP~C 329 (408)
..|--|...+.+...- .|++.||.+|=.=--+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999988654433 589999999953323455689988
No 135
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.58 E-value=27 Score=24.75 Aligned_cols=38 Identities=21% Similarity=0.592 Sum_probs=29.2
Q ss_pred CCccccccccccC----CeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|+.|.+.+.. .....-+..+|.+|. .|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 4579999998875 344456778999984 7999988875
No 136
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=39.57 E-value=17 Score=24.96 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=28.7
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|+-|.+.+.......-+..+|..|. .|..|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCcC--------EECCCCCCCCC
Confidence 4579999988874444456778898884 68899888753
No 137
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=38.91 E-value=7.1 Score=29.63 Aligned_cols=41 Identities=24% Similarity=0.714 Sum_probs=25.5
Q ss_pred CCCCccccccccccCCeEEe-----ec-ccccHhhHHHHHhc----CCCCcc-ccC
Q 015350 287 ASDSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPT-CRA 331 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~lp-----C~-H~Fh~~Cl~~wl~~----~~~CP~-Cr~ 331 (408)
.+...| ||..... +..+- |. .-||..|+. +.. .-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 445567 9987533 23443 33 569999985 322 345999 974
No 138
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.48 E-value=14 Score=26.90 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=28.6
Q ss_pred CCCccccccccccCCeEEe-----ecccccHhhHHHHHh---------cCCCCccccCcc
Q 015350 288 SDSTCIICREEMTTAKKLI-----CGHLFHVHCLRSWLE---------RQHTCPTCRALV 333 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lp-----C~H~Fh~~Cl~~wl~---------~~~~CP~Cr~~i 333 (408)
....| ||.........+. |..-||..|+.---. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45567 8988755555554 556799999853111 244699997643
No 139
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=37.41 E-value=2.7 Score=25.84 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=8.4
Q ss_pred CCccccccccccCC
Q 015350 289 DSTCIICREEMTTA 302 (408)
Q Consensus 289 ~~~C~IC~~~~~~~ 302 (408)
+..||+|+.++..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 45677776665544
No 140
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.05 E-value=11 Score=27.95 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCCccccccccccCCeE----EeecccccHhhHHHH
Q 015350 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSW 319 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~w 319 (408)
+...|.+|...|..-.. -.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45689999999865432 259999999997553
No 141
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=36.57 E-value=12 Score=26.89 Aligned_cols=30 Identities=20% Similarity=0.598 Sum_probs=22.3
Q ss_pred CCccccccccccCCeE----EeecccccHhhHHH
Q 015350 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~ 318 (408)
+..|.+|...|..-.. -.||++||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999998865432 25999999999743
No 142
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=35.94 E-value=12 Score=27.66 Aligned_cols=31 Identities=26% Similarity=0.744 Sum_probs=23.1
Q ss_pred CCCccccccccccCCeE----EeecccccHhhHHH
Q 015350 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~ 318 (408)
+...|.+|...|..-.. -.||++||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34579999999875432 25999999999754
No 143
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.77 E-value=12 Score=27.69 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=22.0
Q ss_pred CCCccccccccccCCeE----EeecccccHhhHH
Q 015350 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLR 317 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~ 317 (408)
+...|.+|...|..-.. -.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34579999999864322 2699999999953
No 144
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.63 E-value=11 Score=30.45 Aligned_cols=30 Identities=20% Similarity=0.664 Sum_probs=22.3
Q ss_pred CCccccccccccCCeE----EeecccccHhhHHH
Q 015350 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~ 318 (408)
...|.+|...|..-.. -.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999998874322 25999999999643
No 145
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.07 E-value=30 Score=24.85 Aligned_cols=39 Identities=23% Similarity=0.634 Sum_probs=29.6
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|+-|.+.+.......-+..||..|. .|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CCcCccccCEeccceEEECCceeCccCC--------ccccCCCCCCC
Confidence 3589999998875444466788998884 68889888753
No 146
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.69 E-value=29 Score=24.10 Aligned_cols=39 Identities=31% Similarity=0.725 Sum_probs=27.8
Q ss_pred CCccccccccccCC-eEE-eecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTA-KKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~-~~l-pC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|.-|.+.+... ..+ .-+..||..|. .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCcccC--------eECCCCCcCCC
Confidence 45799998888753 333 46778888884 68888887753
No 147
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=34.58 E-value=8.3 Score=37.68 Aligned_cols=46 Identities=17% Similarity=0.460 Sum_probs=0.0
Q ss_pred CCCccccccccccCCeE----EeecccccHhhHHHHHh-------cCCCCccccCcc
Q 015350 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWLE-------RQHTCPTCRALV 333 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~wl~-------~~~~CP~Cr~~i 333 (408)
+...|.+|...+..-.+ -.||++||..|...... ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35679999998864322 36999999999876531 123577775544
No 148
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.52 E-value=12 Score=28.30 Aligned_cols=46 Identities=22% Similarity=0.564 Sum_probs=30.7
Q ss_pred CCccccccccccCCeE----EeecccccHhhHHHHHh------cCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRSWLE------RQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~wl~------~~~~CP~Cr~~i~ 334 (408)
...|.+|...|..-.. -.||++||..|...... ....|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 4579999998864322 26999999999865431 1234777765553
No 149
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=34.41 E-value=6 Score=33.64 Aligned_cols=45 Identities=20% Similarity=0.543 Sum_probs=28.8
Q ss_pred CCCCccccccccccC-CeEEe---ecccccHhhHHHHH-----hcCCCCccccCc
Q 015350 287 ASDSTCIICREEMTT-AKKLI---CGHLFHVHCLRSWL-----ERQHTCPTCRAL 332 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~-~~~lp---C~H~Fh~~Cl~~wl-----~~~~~CP~Cr~~ 332 (408)
.++..| +|.....+ ...+. |..-||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345678 99887643 33454 66679999984211 124469999764
No 150
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=34.39 E-value=7.7 Score=27.66 Aligned_cols=43 Identities=21% Similarity=0.551 Sum_probs=27.6
Q ss_pred CCCccccccccccCCeEEe---ecccccHhhHHHHHh---cCCCCccccC
Q 015350 288 SDSTCIICREEMTTAKKLI---CGHLFHVHCLRSWLE---RQHTCPTCRA 331 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lp---C~H~Fh~~Cl~~wl~---~~~~CP~Cr~ 331 (408)
+...| ||.........+. |..-||..|+.---. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45567 9988766444554 666799999853211 2345998864
No 151
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.21 E-value=26 Score=24.36 Aligned_cols=39 Identities=23% Similarity=0.573 Sum_probs=28.1
Q ss_pred CCccccccccccCC--eEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTA--KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|..|.+.+... ....-+..+|..|. .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCC--------cccccCCccCC
Confidence 35799999888754 33356778888884 68888887753
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.48 E-value=32 Score=23.99 Aligned_cols=38 Identities=21% Similarity=0.509 Sum_probs=28.5
Q ss_pred CCccccccccccC----CeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~----~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|.-|.+.+.. .....-+..+|..|. .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 4579999998874 233346788998884 7899988875
No 153
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=33.16 E-value=13 Score=25.55 Aligned_cols=39 Identities=26% Similarity=0.732 Sum_probs=25.6
Q ss_pred CCccccccccccCCeEEe-----ec-ccccHhhHHHHHhc----CCCCccccC
Q 015350 289 DSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRA 331 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lp-----C~-H~Fh~~Cl~~wl~~----~~~CP~Cr~ 331 (408)
+..| +|.+... +..+. |. .-||..|+. +.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4456 9988643 45554 55 579999997 333 235999964
No 154
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.12 E-value=33 Score=24.57 Aligned_cols=39 Identities=21% Similarity=0.501 Sum_probs=30.1
Q ss_pred CCCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
....|+-|.+.+.......-+..||..|. +|..|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCCccccCCCeecceeEEECCccccHHhc--------CcccCCCccC
Confidence 35679999988876544567788998884 7999988875
No 155
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.63 E-value=39 Score=24.44 Aligned_cols=42 Identities=31% Similarity=0.810 Sum_probs=30.6
Q ss_pred CCCCccccccccccCCeE-EeecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 287 ASDSTCIICREEMTTAKK-LICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~-lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
.....|.-|.+.+..... ..-+..||..|. .|-.|+..+...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 345689999998855433 345778999994 789998888643
No 156
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.15 E-value=2.9 Score=32.02 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=26.9
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
+..||.|..+++.. =++..|..|-.. +....-||-|.+++.
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHH
Confidence 47899999887531 123346667443 334556999998874
No 157
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=32.15 E-value=16 Score=27.98 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=11.0
Q ss_pred cccHhhHHHHHhc
Q 015350 310 LFHVHCLRSWLER 322 (408)
Q Consensus 310 ~Fh~~Cl~~wl~~ 322 (408)
.||+.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999854
No 158
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.03 E-value=16 Score=27.91 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=10.9
Q ss_pred cccHhhHHHHHhc
Q 015350 310 LFHVHCLRSWLER 322 (408)
Q Consensus 310 ~Fh~~Cl~~wl~~ 322 (408)
.||+.|+..|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999853
No 159
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.57 E-value=37 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=29.9
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|+-|.+.+.......-+..+|..|. .|..|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCSSCEEETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CCccccCCCeecceeEEECCCeEecCcC--------ChhhCCCCCCC
Confidence 3579999988876555566778998884 69999888864
No 160
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.91 E-value=76 Score=26.32 Aligned_cols=44 Identities=16% Similarity=0.487 Sum_probs=28.2
Q ss_pred CCCcccccccccc---CCeE--EeecccccHhhHHHHHhcC--CCCccccCc
Q 015350 288 SDSTCIICREEMT---TAKK--LICGHLFHVHCLRSWLERQ--HTCPTCRAL 332 (408)
Q Consensus 288 ~~~~C~IC~~~~~---~~~~--lpC~H~Fh~~Cl~~wl~~~--~~CP~Cr~~ 332 (408)
.+..|.+|...+. .... ..|+|.+|..|- .|.... -.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 3678999999863 2222 258999999996 233222 237777643
No 161
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=30.41 E-value=6.2 Score=30.80 Aligned_cols=44 Identities=25% Similarity=0.562 Sum_probs=28.4
Q ss_pred CCccccccccccCC-eEEe----ecccccHhhHHHH------H----hcCCCCccccCc
Q 015350 289 DSTCIICREEMTTA-KKLI----CGHLFHVHCLRSW------L----ERQHTCPTCRAL 332 (408)
Q Consensus 289 ~~~C~IC~~~~~~~-~~lp----C~H~Fh~~Cl~~w------l----~~~~~CP~Cr~~ 332 (408)
...|.+|...+.+. ..+. |..-||..|+.-= + ...-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 45799999987443 3444 4556999998421 1 023469999764
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.81 E-value=14 Score=32.78 Aligned_cols=31 Identities=29% Similarity=0.652 Sum_probs=22.9
Q ss_pred CCCccccccccccCCeE----EeecccccHhhHHH
Q 015350 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----lpC~H~Fh~~Cl~~ 318 (408)
++..|.+|...|..-.. -.||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35789999998864321 25999999999754
No 163
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.65 E-value=39 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.576 Sum_probs=28.8
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|+-|.+.+.......-+..+|..|. .|-.|++++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhhC--------CcccCCCcCC
Confidence 3579999888876554556778998884 6888988874
No 164
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.39 E-value=48 Score=23.83 Aligned_cols=39 Identities=31% Similarity=0.755 Sum_probs=29.5
Q ss_pred CCCccccccccccCCe-EEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 288 SDSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
....|.-|-+.+.... ...-+..+|..|. .|..|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccC--------CcCcCCCCcC
Confidence 3568999999886443 3456778999884 7999988875
No 165
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.92 E-value=9.6 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.481 Sum_probs=22.8
Q ss_pred CCccccccccccCCe---E--Ee---ecccccHhhHHHHHhc
Q 015350 289 DSTCIICREEMTTAK---K--LI---CGHLFHVHCLRSWLER 322 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~---~--lp---C~H~Fh~~Cl~~wl~~ 322 (408)
...||-|.-.++... . -+ |+|.||..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 357888877765432 1 12 8888888888887643
No 166
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.88 E-value=36 Score=23.97 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=27.2
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|+-|.+.+.......-+..+|.+|. .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 3468888887766444456778888884 6888887775
No 167
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=28.87 E-value=34 Score=24.20 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.1
Q ss_pred Ccccccccccc
Q 015350 290 STCIICREEMT 300 (408)
Q Consensus 290 ~~C~IC~~~~~ 300 (408)
..|..|...+.
T Consensus 28 F~C~~C~~~L~ 38 (76)
T 1iml_A 28 LKCEKCGKTLT 38 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCccccCccCC
Confidence 34445544443
No 168
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.68 E-value=47 Score=23.74 Aligned_cols=39 Identities=21% Similarity=0.618 Sum_probs=28.7
Q ss_pred CCccccccccccCC--eEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTA--KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|..|.+.+... ....-+..+|..|. .|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEECccccccccC--------chhhCCCccCC
Confidence 45899999988743 33346778998884 68889887754
No 169
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.57 E-value=33 Score=24.58 Aligned_cols=38 Identities=21% Similarity=0.515 Sum_probs=28.3
Q ss_pred CCccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|+.|.+.+.......-+..||.+|. .|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CCcCccCCCCcCceEEEECCceeccccC--------CccCCCCccC
Confidence 3579999888875444456778888884 6889988875
No 170
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.34 E-value=49 Score=23.27 Aligned_cols=39 Identities=21% Similarity=0.524 Sum_probs=29.1
Q ss_pred CCccccccccccC-----CeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTT-----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~-----~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|+-|.+.+.. .....=+..+|..|. .|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCCCC
Confidence 4579999998874 333456778999884 79999888853
No 171
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.83 E-value=23 Score=25.44 Aligned_cols=39 Identities=26% Similarity=0.528 Sum_probs=27.7
Q ss_pred CCccccccccccCC-eEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~-~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
...|..|.+.+... ....-+..+|..|. .|-.|++++..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEeCCcccccccC--------ccCCCCCCCCC
Confidence 45799999888544 33456778888884 58888887754
No 172
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.70 E-value=28 Score=27.67 Aligned_cols=38 Identities=21% Similarity=0.506 Sum_probs=30.5
Q ss_pred CCccccccccccCCe-EEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|.-|.+.+.... ...-+..+|..|. .|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 357999999887764 4467888999994 7999999885
No 173
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.43 E-value=25 Score=35.18 Aligned_cols=44 Identities=23% Similarity=0.479 Sum_probs=27.2
Q ss_pred cccccccccc-CCeEEe---ecccccHhhHHHHHh-----cCCCCccccCccc
Q 015350 291 TCIICREEMT-TAKKLI---CGHLFHVHCLRSWLE-----RQHTCPTCRALVV 334 (408)
Q Consensus 291 ~C~IC~~~~~-~~~~lp---C~H~Fh~~Cl~~wl~-----~~~~CP~Cr~~i~ 334 (408)
..++|..... ....+. |.--||..|+.---. ..-.||.|+..-.
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 3449988764 333454 565699999843211 1346999986543
No 174
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=26.17 E-value=24 Score=24.79 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=20.4
Q ss_pred CCCCccccccccccCCe-EEe----ecccccHhhHH
Q 015350 287 ASDSTCIICREEMTTAK-KLI----CGHLFHVHCLR 317 (408)
Q Consensus 287 ~~~~~C~IC~~~~~~~~-~lp----C~H~Fh~~Cl~ 317 (408)
.....|++|...+.+.. .+. |.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34568999999876543 344 45569999983
No 175
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.14 E-value=59 Score=22.47 Aligned_cols=38 Identities=34% Similarity=0.702 Sum_probs=26.1
Q ss_pred CCccccccccccCC--eEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTA--KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~--~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|..|.+.+... ....-+..+|..|. .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCC--------cccccCCcCC
Confidence 45788888877642 33455677888874 6888887774
No 176
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.63 E-value=52 Score=23.08 Aligned_cols=40 Identities=23% Similarity=0.560 Sum_probs=29.3
Q ss_pred CCCccccccccccC-C-eEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTT-A-KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~-~-~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
....|+-|.+.+.. . ....-+..+|..|. .|-.|++++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEeccccC--------eECCCCCCCCC
Confidence 35689999998863 2 23366788998884 68889887754
No 177
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=24.46 E-value=36 Score=22.51 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=24.6
Q ss_pred ccccccccccCC-eEEe----ecccccHhhHHHH----HhcCCCCcccc
Q 015350 291 TCIICREEMTTA-KKLI----CGHLFHVHCLRSW----LERQHTCPTCR 330 (408)
Q Consensus 291 ~C~IC~~~~~~~-~~lp----C~H~Fh~~Cl~~w----l~~~~~CP~Cr 330 (408)
.|.+|.....+. ..+. |..-||..|+.-- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888877543 3344 4446999997421 12456799885
No 178
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.04 E-value=25 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.558 Sum_probs=14.4
Q ss_pred CccccccccccCCeEE-eecccccHhh
Q 015350 290 STCIICREEMTTAKKL-ICGHLFHVHC 315 (408)
Q Consensus 290 ~~C~IC~~~~~~~~~l-pC~H~Fh~~C 315 (408)
+.|+.|....-...++ .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecceeEEECCeEecccC
Confidence 3567776665444333 2355666666
No 179
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.33 E-value=1e+02 Score=24.00 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=16.6
Q ss_pred ecccccHhhHH------HHHhc-----CCCCccccCc
Q 015350 307 CGHLFHVHCLR------SWLER-----QHTCPTCRAL 332 (408)
Q Consensus 307 C~H~Fh~~Cl~------~wl~~-----~~~CP~Cr~~ 332 (408)
|++-||..|.. +-+.+ ...||.|...
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 77889999952 12222 3579999553
No 180
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.21 E-value=23 Score=20.57 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=8.5
Q ss_pred CCCccccCcccC
Q 015350 324 HTCPTCRALVVP 335 (408)
Q Consensus 324 ~~CP~Cr~~i~~ 335 (408)
..||.|+...+.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 468888876653
No 181
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.86 E-value=65 Score=22.02 Aligned_cols=41 Identities=27% Similarity=0.658 Sum_probs=30.1
Q ss_pred CCCccccccccccCCeE-E-eecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 288 SDSTCIICREEMTTAKK-L-ICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~-l-pC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
....|.-|.+.+..... + .-+..+|..|. .|-.|.+++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 35689999998875532 3 56778998885 688898887543
No 182
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.79 E-value=42 Score=32.38 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCCccccccccccC--CeEEeecccccHhhHHHHHhc----------CCCCccccCc
Q 015350 288 SDSTCIICREEMTT--AKKLICGHLFHVHCLRSWLER----------QHTCPTCRAL 332 (408)
Q Consensus 288 ~~~~C~IC~~~~~~--~~~lpC~H~Fh~~Cl~~wl~~----------~~~CP~Cr~~ 332 (408)
.+..|-+|-+.-+- ...-.|...||..|++..+.. .-.|=+|.-.
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 35567777654211 111158889999999998733 3368888643
No 183
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.68 E-value=9 Score=28.19 Aligned_cols=19 Identities=32% Similarity=0.756 Sum_probs=14.9
Q ss_pred eecccccHhhHHHHHhcCCCC
Q 015350 306 ICGHLFHVHCLRSWLERQHTC 326 (408)
Q Consensus 306 pC~H~Fh~~Cl~~wl~~~~~C 326 (408)
.|||.||..|-..|=. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 4899999999988744 455
No 184
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=21.50 E-value=59 Score=22.11 Aligned_cols=37 Identities=16% Similarity=0.566 Sum_probs=27.9
Q ss_pred CccccccccccC--CeEEeeccccc--HhhHHHHHhcCCCCccccCccc
Q 015350 290 STCIICREEMTT--AKKLICGHLFH--VHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 290 ~~C~IC~~~~~~--~~~lpC~H~Fh--~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
..|+-|.+.+.. .....-+..+| .+|. +|-.|+.++.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCE--------ECCCCCCcCC
Confidence 468899888874 34445678899 8884 7888988875
No 185
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.37 E-value=12 Score=26.74 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=27.8
Q ss_pred CCCccccccccccCC-eEEe---ecccccHhhHHHHH----hcCCCCccccCc
Q 015350 288 SDSTCIICREEMTTA-KKLI---CGHLFHVHCLRSWL----ERQHTCPTCRAL 332 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~-~~lp---C~H~Fh~~Cl~~wl----~~~~~CP~Cr~~ 332 (408)
....| ||....... ..+. |..-||..|+.--- .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 698876544 3454 66679999985321 123459999754
No 186
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.30 E-value=80 Score=24.62 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=32.7
Q ss_pred CccccccccccC---CeEEeecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 290 STCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 290 ~~C~IC~~~~~~---~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
..|..|...+.+ .-...=|..+|..|..+-+.....|..|..+|.+.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 468888777752 22335567788999877555444899999988753
No 187
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.21 E-value=78 Score=23.13 Aligned_cols=41 Identities=22% Similarity=0.662 Sum_probs=30.5
Q ss_pred CCCccccccccccCCeE-EeecccccHhhHHHHHhcCCCCccccCcccCC
Q 015350 288 SDSTCIICREEMTTAKK-LICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (408)
Q Consensus 288 ~~~~C~IC~~~~~~~~~-lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~~ 336 (408)
....|.-|.+.+..... ..-+..+|..|. .|-.|..++...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 35689999998876433 456778999884 688898887643
No 188
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.64 E-value=89 Score=24.31 Aligned_cols=45 Identities=13% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCccccccccccCCe-EEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 289 DSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
-..|..|...+.... ...=|..+|..|..+ .....|+.|.++|.+
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVK--NHAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHH--HSCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCc--CcCccCcccCCcCCc
Confidence 367888888776532 234567788888765 345789999998875
No 189
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.57 E-value=78 Score=24.69 Aligned_cols=38 Identities=21% Similarity=0.506 Sum_probs=29.7
Q ss_pred CCccccccccccCCe-EEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 289 DSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 289 ~~~C~IC~~~~~~~~-~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
...|+-|-+.+.... ...-+..+|..|. +|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 43 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCL--------KCSSCQAQLG 43 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHH--------CCSSSCCCTT
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCC--------CcCCCCCccc
Confidence 457999999887764 4456788999996 6888888875
No 190
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.27 E-value=77 Score=24.85 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=32.4
Q ss_pred CCCccccccccccC---CeEEeecccccHhhHHHHHhcCCCCccccCcccC
Q 015350 288 SDSTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (408)
Q Consensus 288 ~~~~C~IC~~~~~~---~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~~ 335 (408)
+-..|..|...+.. .-...=|..+|..|..+-......|+.|.++|.+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 34678888887753 2233456778888887744333379999998865
No 191
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.11 E-value=7.1 Score=28.95 Aligned_cols=40 Identities=23% Similarity=0.575 Sum_probs=21.3
Q ss_pred CccccccccccCCeEEeecccccHhhHHHHHhcCCCCccccCccc
Q 015350 290 STCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (408)
Q Consensus 290 ~~C~IC~~~~~~~~~lpC~H~Fh~~Cl~~wl~~~~~CP~Cr~~i~ 334 (408)
..|+.|..++..... +..|..|-.. +....-||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~----~~~C~~C~~~-~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD----TAHCETCAKD-FSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS----EEECTTTCCE-EEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC----ceECcccccc-CCCcccCcchhhHHH
Confidence 468888877653211 2234445332 222335777777663
Done!