Your job contains 1 sequence.
>015351
MMGSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK
QKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV
DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ
IFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGE
VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDL
YRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAR
EVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015351
(408 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 1825 3.0e-188 1
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 1680 6.9e-173 1
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 1512 4.4e-155 1
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 1333 4.1e-136 1
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 1328 1.4e-135 1
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 1328 1.4e-135 1
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 1327 1.8e-135 1
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 1327 1.8e-135 1
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 1317 2.0e-134 1
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 1308 1.8e-133 1
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 1303 6.2e-133 1
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 1299 1.6e-132 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 1299 1.6e-132 1
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 1243 1.4e-126 1
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 1174 2.9e-119 1
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 1123 7.3e-114 1
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 1114 6.6e-113 1
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 1113 8.4e-113 1
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 868 7.7e-87 1
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 868 7.7e-87 1
CGD|CAL0004743 - symbol:orf19.332 species:5476 "Candida a... 670 7.4e-66 1
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp... 663 4.1e-65 1
ZFIN|ZDB-GENE-030131-2575 - symbol:prpf6 "PRP6 pre-mRNA p... 232 2.8e-16 1
UNIPROTKB|F1N9U0 - symbol:PRPF6 "Uncharacterized protein"... 230 4.7e-16 1
FB|FBgn0036828 - symbol:CG6841 species:7227 "Drosophila m... 225 1.7e-15 1
TAIR|locus:2184236 - symbol:AT5G28740 species:3702 "Arabi... 230 2.0e-15 2
FB|FBgn0033859 - symbol:CG6197 species:7227 "Drosophila m... 224 2.0e-15 1
TAIR|locus:2128751 - symbol:EMB2770 "EMBRYO DEFECTIVE 277... 223 2.2e-15 2
RGD|1307103 - symbol:Prpf6 "PRP6 pre-mRNA processing fact... 223 2.9e-15 1
UNIPROTKB|E2RPW8 - symbol:PRPF6 "Uncharacterized protein"... 222 3.8e-15 1
MGI|MGI:1922946 - symbol:Prpf6 "PRP6 pre-mRNA splicing fa... 221 4.9e-15 1
UNIPROTKB|Q2KJJ0 - symbol:PRPF6 "Pre-mRNA-processing fact... 217 1.4e-14 1
WB|WBGene00013343 - symbol:prp-6 species:6239 "Caenorhabd... 216 1.9e-14 1
UNIPROTKB|J9PAI6 - symbol:XAB2 "Uncharacterized protein" ... 211 5.2e-14 1
ZFIN|ZDB-GENE-040426-685 - symbol:xab2 "XPA binding prote... 211 5.7e-14 1
UNIPROTKB|E2RPV4 - symbol:XAB2 "Uncharacterized protein" ... 211 5.7e-14 1
UNIPROTKB|F5H315 - symbol:XAB2 "Pre-mRNA-splicing factor ... 209 9.6e-14 1
UNIPROTKB|Q9HCS7 - symbol:XAB2 "Pre-mRNA-splicing factor ... 209 9.6e-14 1
UNIPROTKB|F6RY07 - symbol:XAB2 "Uncharacterized protein" ... 209 9.6e-14 1
POMBASE|SPBC211.02c - symbol:cwf3 "complexed with Cdc5 pr... 208 1.1e-13 1
DICTYBASE|DDB_G0277977 - symbol:xab2 "TPR-like helical do... 208 1.2e-13 1
UNIPROTKB|F1SCH5 - symbol:XAB2 "Uncharacterized protein" ... 208 1.3e-13 1
UNIPROTKB|O94906 - symbol:PRPF6 "Pre-mRNA-processing fact... 208 1.4e-13 1
ASPGD|ASPL0000052140 - symbol:AN0111 species:162425 "Emer... 205 2.7e-13 1
MGI|MGI:1914689 - symbol:Xab2 "XPA binding protein 2" spe... 205 2.7e-13 1
RGD|621217 - symbol:Xab2 "XPA binding protein 2" species:... 205 2.7e-13 1
POMBASE|SPBC6B1.07 - symbol:prp1 "U4/U6 x U5 tri-snRNP co... 199 1.4e-12 1
ASPGD|ASPL0000068414 - symbol:AN7447 species:162425 "Emer... 199 1.5e-12 1
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 201 2.1e-12 1
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha... 192 7.7e-12 1
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci... 192 7.7e-12 1
TAIR|locus:2007973 - symbol:CSTF77 species:3702 "Arabidop... 191 8.0e-12 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 195 9.7e-12 1
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 195 9.7e-12 1
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 192 2.1e-11 1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 190 3.5e-11 1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 189 4.5e-11 1
DICTYBASE|DDB_G0272374 - symbol:prpf6 "pre-mRNA processin... 155 7.3e-11 2
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 185 1.2e-10 1
TAIR|locus:2086132 - symbol:HCF107 "high chlorophyll fluo... 176 3.1e-10 1
ZFIN|ZDB-GENE-030131-4076 - symbol:pdcd11 "programmed cel... 178 7.1e-10 1
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa... 137 2.0e-09 2
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 174 2.0e-09 1
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 171 4.3e-09 1
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 169 7.1e-09 1
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 135 7.3e-09 2
MGI|MGI:104602 - symbol:Prpf39 "PRP39 pre-mRNA processing... 133 8.4e-09 2
POMBASE|SPCC1183.07 - symbol:SPCC1183.07 "U3 snoRNP-assoc... 164 2.3e-08 1
UNIPROTKB|A5PJN6 - symbol:UTP6 "Uncharacterized protein" ... 126 2.4e-08 2
WB|WBGene00017768 - symbol:F25B4.5 species:6239 "Caenorha... 102 7.1e-08 2
ZFIN|ZDB-GENE-030616-420 - symbol:prpf39 "PRP39 pre-mRNA ... 106 7.7e-08 2
UNIPROTKB|F1PV57 - symbol:PRPF39 "Uncharacterized protein... 127 9.6e-08 2
DICTYBASE|DDB_G0290181 - symbol:DDB_G0290181 "RNA binding... 154 1.4e-07 1
UNIPROTKB|E2RMS8 - symbol:UTP6 "Uncharacterized protein" ... 105 1.8e-07 2
UNIPROTKB|F1SI15 - symbol:PRPF39 "Uncharacterized protein... 129 2.6e-07 2
UNIPROTKB|Q86UA1 - symbol:PRPF39 "Pre-mRNA-processing fac... 127 4.1e-07 2
GENEDB_PFALCIPARUM|PFL1735c - symbol:PFL1735c "hypothetic... 148 7.2e-07 1
UNIPROTKB|Q8I564 - symbol:PFL1735c "RNA-processing protei... 148 7.2e-07 1
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 150 8.0e-07 1
DICTYBASE|DDB_G0286645 - symbol:cstf3 "cleavage stimulati... 147 9.7e-07 1
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 156 1.0e-06 2
DICTYBASE|DDB_G0280363 - symbol:DDB_G0280363 species:4468... 141 5.6e-06 1
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 145 1.0e-05 3
WB|WBGene00006307 - symbol:suf-1 species:6239 "Caenorhabd... 120 1.1e-05 2
WB|WBGene00007111 - symbol:B0035.12 species:6239 "Caenorh... 119 1.2e-05 2
UNIPROTKB|G4MRU5 - symbol:MGG_04558 "Pre-mRNA-processing ... 134 1.2e-05 1
UNIPROTKB|D4A0B1 - symbol:D4A0B1 "Uncharacterized protein... 130 1.5e-05 2
ASPGD|ASPL0000046692 - symbol:AN1635 species:162425 "Emer... 133 1.5e-05 1
SGD|S000002824 - symbol:SYF1 "Member of the NineTeen Comp... 111 2.2e-05 2
RGD|1305901 - symbol:Cstf3 "cleavage stimulation factor, ... 132 2.3e-05 1
UNIPROTKB|Q9NYH9 - symbol:UTP6 "U3 small nucleolar RNA-as... 98 2.3e-05 2
UNIPROTKB|E2R479 - symbol:CSTF3 "Uncharacterized protein"... 132 2.6e-05 1
UNIPROTKB|Q12996 - symbol:CSTF3 "Cleavage stimulation fac... 132 2.6e-05 1
MGI|MGI:1351825 - symbol:Cstf3 "cleavage stimulation fact... 132 2.6e-05 1
UNIPROTKB|Q5F4A0 - symbol:CSTF3 "Uncharacterized protein"... 132 2.6e-05 1
ASPGD|ASPL0000073973 - symbol:AN4892 species:162425 "Emer... 120 2.7e-05 2
UNIPROTKB|F1NLG7 - symbol:UTP6 "Uncharacterized protein" ... 114 3.6e-05 2
FB|FBgn0039600 - symbol:CG1646 species:7227 "Drosophila m... 109 4.1e-05 2
UNIPROTKB|A8E4M9 - symbol:PRPF39 "Uncharacterized protein... 128 4.9e-05 1
TAIR|locus:2135892 - symbol:EMB140 "EMBRYO DEFECTIVE 140"... 130 5.1e-05 1
WARNING: Descriptions of 19 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
Identities = 335/406 (82%), Positives = 362/406 (89%)
Query: 3 GSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKQK 62
G KD+D +LGY+TRKDTEVKLPRPTRVKNKTPAPIQIT PPKQK
Sbjct: 4 GGKDSDRTLGYMTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQK 63
Query: 63 ITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDY 122
ITDSTEL+DYRLR+RKEFED IRR RWN VW+KYA+WEESQKD+ RARSVWERA+E DY
Sbjct: 64 ITDSTELSDYRLRRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIEGDY 123
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIF 182
RNHTLWLKYAE EMKNKF+N ARNVWDRAVTLLPRVDQLWYKYIHMEE+LGN+AGARQIF
Sbjct: 124 RNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIF 183
Query: 183 ERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVD 242
ERWM W PDQQGWLS+IKFELRYNE+ERAR IYERFV CHPKVS +I+YAKFEMK GEV
Sbjct: 184 ERWMDWSPDQQGWLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIRYAKFEMKGGEVA 243
Query: 243 RARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYR 302
R R+VYERA EKLADDEEAE LFVAFAEFEERCKE ERAR IYKFALDHIPKGRAEDLYR
Sbjct: 244 RCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYR 303
Query: 303 KFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREV 362
KFVAFEKQYGD+EGIEDAIVGKRRFQYEDEVRK+P NYD WFDY+RLEESVGNK+R RE+
Sbjct: 304 KFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREI 363
Query: 363 YERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
YERAIANVPPAEEKRYWQRYIYLWINYAL+EE++ D+ERTRDVY+
Sbjct: 364 YERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYR 409
Score = 287 (106.1 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 93/341 (27%), Positives = 162/341 (47%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
+I+YAK+E + R RSV+ERA E D L++ +AE E + K + AR ++
Sbjct: 229 YIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKF 288
Query: 151 AVTLLP--RVDQLWYKYIHMEEMLGN-------VAGARQI-FERWMHWMPDQ-QGWLSYI 199
A+ +P R + L+ K++ E+ G+ + G R+ +E + P W Y+
Sbjct: 289 ALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYV 348
Query: 200 KFELRYNEVERARQIYERFVQCHPK----------VSTWIKYAKFE-MKMGEVDRARNVY 248
+ E +R R+IYER + P + WI YA FE ++ +++R R+VY
Sbjct: 349 RLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVY 408
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
++ + + + ++++ A+FE R AR I A+ PK + +++K++
Sbjct: 409 RECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDK---IFKKYIEI 465
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q G+ + + R YE + +P N W Y LE S+ ERAR ++E AI
Sbjct: 466 ELQLGNMD--------RCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAI 517
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ + W+ YI E+ G++ERTR +Y+
Sbjct: 518 SQPALDMPELLWKAYIDF--------EISEGELERTRALYE 550
Score = 275 (101.9 bits), Expect = 9.6e-22, P = 9.6e-22
Identities = 84/282 (29%), Positives = 138/282 (48%)
Query: 65 DSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL----- 118
D + D + KR+ ++ED +R+ N W Y + EES + +R R ++ERA+
Sbjct: 314 DKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPP 373
Query: 119 --EVDY--RNHTLWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYKYIHME 169
E Y R LW+ YA E ++ + I R+V+ + L+P ++W E
Sbjct: 374 AEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFE 433
Query: 170 EMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTW 228
N+ GARQI + P + + YI+ EL+ ++R R++YER+++ P+ W
Sbjct: 434 IRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAW 493
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
KYA+ E + E +RAR ++E A+ + A D E L+ A+ +FE E ER R +Y+
Sbjct: 494 SKYAELERSLVETERARAIFELAISQPALDMP-ELLWKAYIDFEISEGELERTRALYERL 552
Query: 289 LDHIPKGRAEDLYRKFVAF-----EKQYGDREGIEDAIVGKR 325
LD + + KF A E + D + ED I K+
Sbjct: 553 LDRTKHYKVWVSFAKFEASAAELEEDENEDEDQEEDVIEHKK 594
Score = 211 (79.3 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 85/346 (24%), Positives = 159/346 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE-------VD-YRNHTLWLK-YAEVE-MKNKFIN 142
+++ +A++EE K+ RAR +++ AL+ D YR + K Y + E +++ +
Sbjct: 265 LFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVG 324
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-------- 194
R ++ V P W+ Y+ +EE +GN R+I+ER + +P +
Sbjct: 325 KRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYI 384
Query: 195 --WLSYIKFE-LRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDRARN 246
W++Y FE + ++ER R +Y ++ H K S W+ A+FE++ + AR
Sbjct: 385 YLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQ 444
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
+ A+ K D+ +F + E E + +R R +Y+ L+ P E+ Y A
Sbjct: 445 ILGNAIGKAPKDK----IFKKYIEIELQLGNMDRCRKLYERYLEWSP----ENCY----A 492
Query: 307 FEKQYGDREGIEDAIVGKRRFQ--YEDEVRKNPMNYD--IWFDYIRLEESVGNKERAREV 362
+ K Y + +E ++V R + +E + + ++ +W YI E S G ER R +
Sbjct: 493 WSK-YAE---LERSLVETERARAIFELAISQPALDMPELLWKAYIDFEISEGELERTRAL 548
Query: 363 YERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
YER + + + W + + A EE + D ++ DV +
Sbjct: 549 YERLLDRT---KHYKVWVSFAKFEASAAELEEDENEDEDQEEDVIE 591
Score = 203 (76.5 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 65/268 (24%), Positives = 123/268 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A++E Q + AR + A+ ++ ++ KY E+E++ ++ R +++R +
Sbjct: 425 IWLLAAQFEIRQLNLTGARQILGNAIGKAPKDK-IFKKYIEIELQLGNMDRCRKLYERYL 483
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W KY +E L AR IFE + MP+ W +YI FE+ E+
Sbjct: 484 EWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMPELL-WKAYIDFEISEGEL 542
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAF 268
ER R +YER + W+ +AKFE E++ N D+++ E +
Sbjct: 543 ERTRALYERLLDRTKHYKVWVSFAKFEASAAELEEDEN---------EDEDQEEDVIEHK 593
Query: 269 AEFEERCKET-ERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIE--DAIVGKR 325
+ +R + +RA YK + + + RA L ++ E +G+ + + + K+
Sbjct: 594 KDCIKRARAIFDRANTYYKDSTPELKEERAT-LLEDWLNMESSFGNLGDVSIVQSKLPKK 652
Query: 326 RFQYEDEVRKN-PMNYDIWFDYIRLEES 352
+ + R++ Y+ + DY+ EES
Sbjct: 653 LKKRKAITREDGSTEYEEYIDYLYPEES 680
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
Identities = 308/396 (77%), Positives = 345/396 (87%)
Query: 14 LTRKDTEVKLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKQKITDSTELADYR 73
+T KD EVKLPR TRVKNKTPAP+QIT PPKQKITDSTEL+DYR
Sbjct: 1 MTGKDAEVKLPRTTRVKNKTPAPVQITAEQILREARERQEAEIRPPKQKITDSTELSDYR 60
Query: 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAE 133
LR+RKEFED IRR RWN VW+KYAKWEESQ D+ RARSVWERALE +YRNHTLW+KYAE
Sbjct: 61 LRRRKEFEDQIRRARWNIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAE 120
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQ 193
EMKNKF+N+ARNVWDR+VTLLPRVDQLW KYI+MEE LGNV GARQIFERWM+W PDQ+
Sbjct: 121 FEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQK 180
Query: 194 GWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMG-EVDRARNVYERAV 252
WL +IKFELRYNE+ERAR IYERFV CHPKVS +I+YAKFEMK G +V AR VYERAV
Sbjct: 181 AWLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIRYAKFEMKRGGQVKLAREVYERAV 240
Query: 253 EKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312
+KLA+DEEAE LFV+FAEFEERCKE ERAR IYKFALDHI KGRAE+LY+KFVAFEKQYG
Sbjct: 241 DKLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQYG 300
Query: 313 DREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPP 372
D+EGIEDAIVGK+RF+YEDEV KNP+NYD WFDY+RLEESVGNK+R RE+YERAIANVPP
Sbjct: 301 DKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPP 360
Query: 373 AEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
A+EKR+WQRYIYLWINYALYEE++ D+ERTRDVY+
Sbjct: 361 AQEKRFWQRYIYLWINYALYEEIETKDVERTRDVYR 396
Score = 236 (88.1 bits), Expect = 5.4e-17, P = 5.4e-17
Identities = 87/342 (25%), Positives = 163/342 (47%)
Query: 94 WIKYAKWEESQK-DFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWD 149
+I+YAK+E + AR V+ERA++ D L++ +AE E + K + AR ++
Sbjct: 215 FIRYAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYK 274
Query: 150 RAVTLLP--RVDQLWYKYIHMEEMLGN-------VAGARQI-FERWMHWMP-DQQGWLSY 198
A+ + R ++L+ K++ E+ G+ + G ++ +E + P + W Y
Sbjct: 275 FALDHIRKGRAEELYKKFVAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDY 334
Query: 199 IKFELRYNEVERARQIYERFVQCHPK----------VSTWIKYAKFE-MKMGEVDRARNV 247
++ E +R R+IYER + P + WI YA +E ++ +V+R R+V
Sbjct: 335 VRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVERTRDV 394
Query: 248 YERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
Y ++ + + + ++++ AE+E R AR I A+ PK + +++K++
Sbjct: 395 YRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVK---IFKKYIE 451
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERA 366
E + + + + R YE + +P N W +Y E S+ ERAR ++E A
Sbjct: 452 MELKLVN--------IDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELA 503
Query: 367 IANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
I+ PA + LW Y +E + G+ E+TR +Y+
Sbjct: 504 ISQ--PALDMPE-----LLWKTYIDFE-ISEGEFEKTRALYE 537
Score = 235 (87.8 bits), Expect = 7.1e-17, P = 7.1e-17
Identities = 70/246 (28%), Positives = 116/246 (47%)
Query: 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM 186
+WL AE E++ + AR + A+ P+V +++ KYI ME L N+ R+++ER++
Sbjct: 412 IWLLAAEYEIRQLNLTGARQILGNAIGKAPKV-KIFKKYIEMELKLVNIDRCRKLYERFL 470
Query: 187 HWMPDQ-QGWLSYIKFELRYNEVERARQIYERFVQCHPKVST----WIKYAKFEMKMGEV 241
W P+ W +Y +FE+ E ERAR I+E + P + W Y FE+ GE
Sbjct: 471 EWSPENCYAWRNYAEFEISLAETERARAIFELAIS-QPALDMPELLWKTYIDFEISEGEF 529
Query: 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET------------ERARCIYKFAL 289
++ R +YER L D + +++++FA+FE E +RA YK
Sbjct: 530 EKTRALYER----LLDRTKHCKVWISFAKFEASASEHKEDGIKSARVIFDRANTYYKDTT 585
Query: 290 DHIPKGRA---EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDY 346
+ + RA ED F + GD ++ + K + + Y+ +FDY
Sbjct: 586 PELEEERATLLEDWLNMETGFG-ELGDVSVVQSKLPKKLKKRKMTSREDGSTEYEEYFDY 644
Query: 347 IRLEES 352
+ EES
Sbjct: 645 LFPEES 650
Score = 219 (82.2 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 80/306 (26%), Positives = 140/306 (45%)
Query: 109 RARSVWERALEVDYRNHTLWLKYAEVE--MKNKFINHARNVWDRAVTLLPRVDQ--LWYK 164
+ R +E + + N+ W Y +E + NK + R +++RA+ +P + W +
Sbjct: 312 KKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNK--DRIREIYERAIANVPPAQEKRFWQR 369
Query: 165 YIHM-------EEM-LGNVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERA 211
YI++ EE+ +V R ++ + +P + WL ++E+R + A
Sbjct: 370 YIYLWINYALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGA 429
Query: 212 RQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
RQI + PKV + KY + E+K+ +DR R +YER +E ++ A + +AEF
Sbjct: 430 RQILGNAIGKAPKVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWR---NYAEF 486
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E ETERAR I++ A+ E L++ ++ FE G+ E K R YE
Sbjct: 487 EISLAETERARAIFELAISQPALDMPELLWKTYIDFEISEGEFE--------KTRALYE- 537
Query: 332 EVRKNPMNYDIWFDYIRLEESVG-NKE----RAREVYERAIA----NVPPAEEKRYWQRY 382
+ + +W + + E S +KE AR +++RA P EE+R
Sbjct: 538 RLLDRTKHCKVWISFAKFEASASEHKEDGIKSARVIFDRANTYYKDTTPELEEER--ATL 595
Query: 383 IYLWIN 388
+ W+N
Sbjct: 596 LEDWLN 601
Score = 175 (66.7 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 49/168 (29%), Positives = 78/168 (46%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A++E Q + AR + A+ + ++ KY E+E+K I+ R +++R +
Sbjct: 412 IWLLAAEYEIRQLNLTGARQILGNAIGKAPKVK-IFKKYIEMELKLVNIDRCRKLYERFL 470
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W Y E L AR IFE + MP+ W +YI FE+ E
Sbjct: 471 EWSPENCYAWRNYAEFEISLAETERARAIFELAISQPALDMPELL-WKTYIDFEISEGEF 529
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEMKMGE-----VDRARNVYERA 251
E+ R +YER + WI +AKFE E + AR +++RA
Sbjct: 530 EKTRALYERLLDRTKHCKVWISFAKFEASASEHKEDGIKSARVIFDRA 577
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
Identities = 280/386 (72%), Positives = 323/386 (83%)
Query: 26 PTRVKNKTPAPIQITXXXXXXXXXXXXXXXXX-PPKQKITDSTELADYRLRKRKEFEDLI 84
P VKNKTPAP+QIT PPKQKITDS ELA+YRLR+RKEFED I
Sbjct: 5 PRMVKNKTPAPVQITAEQVLKEAREREDSRILRPPKQKITDSDELAEYRLRRRKEFEDQI 64
Query: 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD-YRNHTLWLKYAEVEMKNKFINH 143
R + N+ VW++YA WEESQKD +RARSVWERALE + YRNHTLWLKYAE EM+NK +NH
Sbjct: 65 RGAKTNSQVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNH 124
Query: 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFEL 203
ARNVWDRAV +LPRVDQ WYKYIHMEE+LGN+ GAR+IFERWM W PDQQ WL +IKFEL
Sbjct: 125 ARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWLCFIKFEL 184
Query: 204 RYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD-DEEAE 262
RYNE+ER+R IYERFV CHPK S++I+YAKFEMK +V AR VYERA+E L D +EEAE
Sbjct: 185 RYNEIERSRSIYERFVLCHPKASSFIRYAKFEMKNSQVSLARIVYERAIEMLKDVEEEAE 244
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
+FVAFAEFEE CKE ERAR +YK+ALDHIPKGRAEDLY+KFVAFEKQYG++EGI+DAIV
Sbjct: 245 MIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAIV 304
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
G+R+ QYE EVRKNP+NYD WFDYI LEE++G+K+R REVYERAIANVP AEEKRYWQRY
Sbjct: 305 GRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERAIANVPLAEEKRYWQRY 364
Query: 383 IYLWINYALYEELDAGDMERTRDVYQ 408
IYLWI+YAL+EE+ A D+ERTR VY+
Sbjct: 365 IYLWIDYALFEEILAEDVERTRAVYR 390
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 82/295 (27%), Positives = 142/295 (48%)
Query: 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149
N +W+KYA++E K N AR+VW+RA+++ R W KY +E I+ AR +++
Sbjct: 105 NHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFE 164
Query: 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVE 209
R + P Q W +I E + +R I+ER++ P ++ Y KFE++ ++V
Sbjct: 165 RWMDWSPD-QQAWLCFIKFELRYNEIERSRSIYERFVLCHPKASSFIRYAKFEMKNSQVS 223
Query: 210 RARQIYERFVQCHPKVST-----WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQL 264
AR +YER ++ V ++ +A+FE EV+RAR +Y+ A++ + AE L
Sbjct: 224 LARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHIPKGR-AEDL 282
Query: 265 FVAFAEFEERC--KETERARCIYKFALDHIPKGRAE----DLYRKFVAFEKQYGDREGIE 318
+ F FE++ KE + + L + + R D + +++ E+ GD++ I
Sbjct: 283 YKKFVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIR 342
Query: 319 DAIVGK-RRFQYEDEVRKNPMNYDIWFDYIRLEESVGNK-ERAREVYERAIANVP 371
+ +E R +W DY EE + ER R VY + +P
Sbjct: 343 EVYERAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAVYRECLNLIP 397
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
Identities = 247/388 (63%), Positives = 292/388 (75%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP +QKITD EL DY+LRKRK F
Sbjct: 52 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 111
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES K+ RARS++ERAL+VDYRN TLWLKYAE+EMKN+
Sbjct: 112 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQ 171
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T LPRV+Q WYKY +MEEMLGN+AGARQ+FERWM W P++Q W SYI
Sbjct: 172 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYIN 231
Query: 201 FELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260
FELRY EV+RAR IYERFV HP V WIKYA+FE K G AR VYERAVE D+
Sbjct: 232 FELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHM 291
Query: 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320
E L+VAFA+FEE KE ER R IYK+ALD I K A++L++ + FEK++GDR GIED
Sbjct: 292 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI 351
Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
IV KRRFQYE+EV+ NP NYD WFDY+RL ES E REVYERAIANVPP +EKR+W+
Sbjct: 352 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWK 411
Query: 381 RYIYLWINYALYEELDAGDMERTRDVYQ 408
RYIYLW+NYALYEEL+A D ERTR VYQ
Sbjct: 412 RYIYLWVNYALYEELEAKDPERTRQVYQ 439
Score = 264 (98.0 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 83/319 (26%), Positives = 152/319 (47%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
++K D + D + KR+ ++E+ ++ N W Y + ES + R V+ERA+
Sbjct: 339 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAI 398
Query: 119 E----VDYRNHT-----LWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYK 164
+ + H LW+ YA E ++ K R V+ ++ L+P ++W
Sbjct: 399 ANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLL 458
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224
Y E N+ AR+ + P + + YI+ EL+ E +R R++YE+F++ P+
Sbjct: 459 YAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE 518
Query: 225 VST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
T WIK+A+ E +G+++RAR +YE A+ + D E L+ ++ +FE +ETER R
Sbjct: 519 NCTSWIKFAELETILGDIERARAIYELAISQPRLDMP-EVLWKSYIDFEIEQEETERTRN 577
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGD----REGIEDAIVGKRRFQYEDEVRKNPMN 339
+Y+ L + + +F ++ G R+ E+A R + ++E M
Sbjct: 578 LYRRLLQRTQHVKVWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEE---RLML 634
Query: 340 YDIWFDYIRLEESVGNKER 358
+ W + +V +KER
Sbjct: 635 LESWRSFEDEFGTVSDKER 653
Score = 257 (95.5 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 88/341 (25%), Positives = 158/341 (46%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKYA++EE F AR V+ERA+E ++ + L++ +A+ E K R ++
Sbjct: 259 WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 318
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQI--------FERWMHWMP-DQQGWLSYI 199
A+ + + + +L+ Y E+ G+ G I +E + P + W Y+
Sbjct: 319 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 378
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
+ E E R++YER + P + W+ YA +E ++ + +R R VY
Sbjct: 379 RLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVY 438
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ ++E + + ++++ +A+FE R K AR ++ PK + L++ ++
Sbjct: 439 QASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGTSIGKCPKNK---LFKGYIEL 495
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q RE + R YE + P N W + LE +G+ ERAR +YE AI
Sbjct: 496 ELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAI 547
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ P + LW +Y +E ++ + ERTR++Y+
Sbjct: 548 SQ-PRLDMPEV------LWKSYIDFE-IEQEETERTRNLYR 580
Score = 227 (85.0 bits), Expect = 6.8e-16, P = 6.8e-16
Identities = 60/214 (28%), Positives = 106/214 (49%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ YA++E QK+ AR ++ +N L+ Y E+E++ + + R ++++ +
Sbjct: 455 MWLLYAQFEIRQKNLPFARRALGTSIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFL 513
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG++ AR I+E + MP+ W SYI FE+ E
Sbjct: 514 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEET 572
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEM---KMGEVDRARNVYERAVEKLADDEEAEQ-- 263
ER R +Y R +Q V WI +A+FE+ K G + + R +YE A + + + EE E+
Sbjct: 573 ERTRNLYRRLLQRTQHVKVWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERL 632
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR 296
L ++ FE+ + K + + K R
Sbjct: 633 MLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRR 666
Score = 226 (84.6 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 81/346 (23%), Positives = 159/346 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE-VD-------YRNHTLW-LKYAEVE-MKNKFIN 142
+++ +AK+EE+QK+F R R +++ AL+ + ++N+T++ K+ + +++ ++
Sbjct: 295 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVS 354
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM----------HWMPDQ 192
R ++ V P W+ Y+ + E R+++ER + HW
Sbjct: 355 KRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYI 414
Query: 193 QGWLSYIKFE-LRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDRARN 246
W++Y +E L + ER RQ+Y+ ++ H K + W+ YA+FE++ + AR
Sbjct: 415 YLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARR 474
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
++ K ++ LF + E E + +E +R R +Y+ L+ P+ + KF
Sbjct: 475 ALGTSIGKCPKNK----LFKGYIELELQLREFDRCRKLYEKFLEFGPENCTS--WIKFAE 528
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEESVGNKERAREVYE 364
E GD IE A R YE + + ++ +W YI E ER R +Y
Sbjct: 529 LETILGD---IERA-----RAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYR 580
Query: 365 RAIANVPPAEEKRYWQRYIYLWINYALYE--ELDAGDMERTRDVYQ 408
R + +++ +WI++A +E G + + R +Y+
Sbjct: 581 RLLQRT----------QHVKVWISFAQFELSSRKEGSLAKCRQIYE 616
Score = 213 (80.0 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 69/300 (23%), Positives = 134/300 (44%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKY 165
++ R +E ++ + N+ W Y + + R V++RA+ +P + + W +Y
Sbjct: 354 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRY 413
Query: 166 IHM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + RQ+++ + +P ++ WL Y +FE+R + AR
Sbjct: 414 IYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFAR 473
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + PK + Y + E+++ E DR R +YE+ +E E ++ FAE E
Sbjct: 474 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLE--FGPENCTS-WIKFAELE 530
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
+ ERAR IY+ A+ E L++ ++ FE + + E + +R Q
Sbjct: 531 TILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLY--RRLLQRTQH 588
Query: 333 VRKNPMNYDIWFDYIRLEESV---GNKERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
V+ +W + + E S G+ + R++YE A + EEK + W ++
Sbjct: 589 VK-------VWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSF 641
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
Identities = 247/388 (63%), Positives = 291/388 (75%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP +QKITD EL DY+LRKRK F
Sbjct: 11 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 70
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES K+ RARS++ERAL+VDYRN TLWLKYAE+EMKN+
Sbjct: 71 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQ 130
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T LPRV+Q WYKY +MEEMLGNVAGARQ+FERWM W P++Q W SYI
Sbjct: 131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190
Query: 201 FELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260
FELRY EVERAR IYERFV HP V WIKYA+FE K AR VYERAVE D+
Sbjct: 191 FELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHM 250
Query: 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320
E L+VAFA+FEE KE ER R IYK+ALD I K A++L++ + FEK++GDR GIED
Sbjct: 251 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI 310
Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
IV KRRFQYE+EV+ NP NYD WFDY+RL ES + REVYERAIANVPP +EKR+W+
Sbjct: 311 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWK 370
Query: 381 RYIYLWINYALYEELDAGDMERTRDVYQ 408
RYIYLW+NYALYEEL+A D ERTR VYQ
Sbjct: 371 RYIYLWVNYALYEELEAKDPERTRQVYQ 398
Score = 272 (100.8 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 87/309 (28%), Positives = 150/309 (48%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
++K D + D + KR+ ++E+ ++ N W Y + ES + + R V+ERA+
Sbjct: 298 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAI 357
Query: 119 E----VDYRNHT-----LWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYK 164
+ + H LW+ YA E ++ K R V+ ++ L+P ++W
Sbjct: 358 ANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLY 417
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224
Y E N+ AR+ + P + + YI+ EL+ E +R R++YE+F++ P+
Sbjct: 418 YAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE 477
Query: 225 VST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
T WIK+A+ E +G+++RAR +YE A+ + D E L+ ++ +FE +ETER R
Sbjct: 478 NCTSWIKFAELETILGDIERARAIYELAISQPRLDMP-EVLWKSYIDFEIEQEETERTRN 536
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW 343
+Y+ L + ++ F FE G +EG V K R YE E K N +
Sbjct: 537 LYRQLLQRTQHVK---VWISFAQFELSSG-KEGS----VAKCRQIYE-EANKTMRNCEEK 587
Query: 344 FDYIRLEES 352
+ + L ES
Sbjct: 588 EERLMLLES 596
Score = 254 (94.5 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 87/341 (25%), Positives = 158/341 (46%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKYA++EE F AR V+ERA+E ++ + L++ +A+ E K R ++
Sbjct: 218 WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 277
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQI--------FERWMHWMP-DQQGWLSYI 199
A+ + + + +L+ Y E+ G+ G I +E + P + W Y+
Sbjct: 278 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 337
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
+ E + R++YER + P + W+ YA +E ++ + +R R VY
Sbjct: 338 RLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVY 397
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ ++E + + ++++ +A+FE R K AR ++ PK + L++ ++
Sbjct: 398 QASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNK---LFKGYIEL 454
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q RE + R YE + P N W + LE +G+ ERAR +YE AI
Sbjct: 455 ELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAI 506
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ P + LW +Y +E ++ + ERTR++Y+
Sbjct: 507 SQ-PRLDMPEV------LWKSYIDFE-IEQEETERTRNLYR 539
Score = 226 (84.6 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 60/214 (28%), Positives = 106/214 (49%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ YA++E QK+ AR ++ +N L+ Y E+E++ + + R ++++ +
Sbjct: 414 MWLYYAQFEIRQKNLPFARRALGTSIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFL 472
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG++ AR I+E + MP+ W SYI FE+ E
Sbjct: 473 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEET 531
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEM---KMGEVDRARNVYERAVEKLADDEEAEQ-- 263
ER R +Y + +Q V WI +A+FE+ K G V + R +YE A + + + EE E+
Sbjct: 532 ERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERL 591
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR 296
L ++ FE+ + K + + K R
Sbjct: 592 MLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRR 625
Score = 216 (81.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 69/300 (23%), Positives = 135/300 (45%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKY 165
++ R +E ++ + N+ W Y + + + R V++RA+ +P + + W +Y
Sbjct: 313 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRY 372
Query: 166 IHM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + RQ+++ + +P ++ WL Y +FE+R + AR
Sbjct: 373 IYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFAR 432
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + PK + Y + E+++ E DR R +YE+ +E E ++ FAE E
Sbjct: 433 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLE--FGPENCTS-WIKFAELE 489
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
+ ERAR IY+ A+ E L++ ++ FE IE + R Y
Sbjct: 490 TILGDIERARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNLYRQL 541
Query: 333 VRKNPMNYDIWFDYIRLEESVGNK---ERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
+++ + +W + + E S G + + R++YE A + EEK + W ++
Sbjct: 542 LQRT-QHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSF 600
Score = 128 (50.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 72/358 (20%), Positives = 151/358 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE-VD-------YRNHTLW-LKYAEVE-MKNKFIN 142
+++ +AK+EE+QK+F R R +++ AL+ + ++N+T++ K+ + +++ ++
Sbjct: 254 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVS 313
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP---DQQGWLSYI 199
R ++ V P W+ Y+ + E R+++ER + +P +++ W YI
Sbjct: 314 KRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYI 373
Query: 200 KFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE 259
+ Y +YE E++ + +R R VY+ ++E + +
Sbjct: 374 YLWVNY-------ALYE------------------ELEAKDPERTRQVYQASLELIPHKK 408
Query: 260 EA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKG-----------------RAEDLY 301
++++ +A+FE R K AR ++ PK R LY
Sbjct: 409 FTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLY 468
Query: 302 RKFVAFEKQ-------YGDREGIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEES 352
KF+ F + + + E I I R YE + + ++ +W YI E
Sbjct: 469 EKFLEFGPENCTSWIKFAELETILGDIERARAI-YELAISQPRLDMPEVLWKSYIDFEIE 527
Query: 353 VGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDA--GDMERTRDVYQ 408
ER R +Y + + +++ +WI++A +E G + + R +Y+
Sbjct: 528 QEETERTRNLYRQLLQRT----------QHVKVWISFAQFELSSGKEGSVAKCRQIYE 575
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
Identities = 247/388 (63%), Positives = 291/388 (75%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP +QKITD EL DY+LRKRK F
Sbjct: 11 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 70
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES K+ RARS++ERAL+VDYRN TLWLKYAE+EMKN+
Sbjct: 71 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQ 130
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T LPRV+Q WYKY +MEEMLGNVAGARQ+FERWM W P++Q W SYI
Sbjct: 131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190
Query: 201 FELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260
FELRY EVERAR IYERFV HP V WIKYA+FE K AR VYERAVE D+
Sbjct: 191 FELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHM 250
Query: 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320
E L+VAFA+FEE KE ER R IYK+ALD I K A++L++ + FEK++GDR GIED
Sbjct: 251 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI 310
Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
IV KRRFQYE+EV+ NP NYD WFDY+RL ES + REVYERAIANVPP +EKR+W+
Sbjct: 311 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWK 370
Query: 381 RYIYLWINYALYEELDAGDMERTRDVYQ 408
RYIYLW+NYALYEEL+A D ERTR VYQ
Sbjct: 371 RYIYLWVNYALYEELEAKDPERTRQVYQ 398
Score = 272 (100.8 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 87/309 (28%), Positives = 150/309 (48%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
++K D + D + KR+ ++E+ ++ N W Y + ES + + R V+ERA+
Sbjct: 298 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAI 357
Query: 119 E----VDYRNHT-----LWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYK 164
+ + H LW+ YA E ++ K R V+ ++ L+P ++W
Sbjct: 358 ANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLY 417
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224
Y E N+ AR+ + P + + YI+ EL+ E +R R++YE+F++ P+
Sbjct: 418 YAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE 477
Query: 225 VST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
T WIK+A+ E +G+++RAR +YE A+ + D E L+ ++ +FE +ETER R
Sbjct: 478 NCTSWIKFAELETILGDIERARAIYELAISQPRLDMP-EVLWKSYIDFEIEQEETERTRN 536
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW 343
+Y+ L + ++ F FE G +EG V K R YE E K N +
Sbjct: 537 LYRQLLQRTQHVK---VWISFAQFELSSG-KEGS----VAKCRQIYE-EANKTMRNCEEK 587
Query: 344 FDYIRLEES 352
+ + L ES
Sbjct: 588 EERLMLLES 596
Score = 254 (94.5 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 87/341 (25%), Positives = 158/341 (46%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKYA++EE F AR V+ERA+E ++ + L++ +A+ E K R ++
Sbjct: 218 WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 277
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQI--------FERWMHWMP-DQQGWLSYI 199
A+ + + + +L+ Y E+ G+ G I +E + P + W Y+
Sbjct: 278 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 337
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
+ E + R++YER + P + W+ YA +E ++ + +R R VY
Sbjct: 338 RLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVY 397
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ ++E + + ++++ +A+FE R K AR ++ PK + L++ ++
Sbjct: 398 QASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNK---LFKGYIEL 454
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q RE + R YE + P N W + LE +G+ ERAR +YE AI
Sbjct: 455 ELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAI 506
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ P + LW +Y +E ++ + ERTR++Y+
Sbjct: 507 SQ-PRLDMPEV------LWKSYIDFE-IEQEETERTRNLYR 539
Score = 226 (84.6 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 60/214 (28%), Positives = 106/214 (49%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ YA++E QK+ AR ++ +N L+ Y E+E++ + + R ++++ +
Sbjct: 414 MWLYYAQFEIRQKNLPFARRALGTSIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFL 472
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG++ AR I+E + MP+ W SYI FE+ E
Sbjct: 473 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEET 531
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEM---KMGEVDRARNVYERAVEKLADDEEAEQ-- 263
ER R +Y + +Q V WI +A+FE+ K G V + R +YE A + + + EE E+
Sbjct: 532 ERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERL 591
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR 296
L ++ FE+ + K + + K R
Sbjct: 592 MLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRR 625
Score = 216 (81.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 69/300 (23%), Positives = 135/300 (45%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKY 165
++ R +E ++ + N+ W Y + + + R V++RA+ +P + + W +Y
Sbjct: 313 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRY 372
Query: 166 IHM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + RQ+++ + +P ++ WL Y +FE+R + AR
Sbjct: 373 IYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFAR 432
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + PK + Y + E+++ E DR R +YE+ +E E ++ FAE E
Sbjct: 433 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLE--FGPENCTS-WIKFAELE 489
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
+ ERAR IY+ A+ E L++ ++ FE IE + R Y
Sbjct: 490 TILGDIERARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEETERTRNLYRQL 541
Query: 333 VRKNPMNYDIWFDYIRLEESVGNK---ERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
+++ + +W + + E S G + + R++YE A + EEK + W ++
Sbjct: 542 LQRT-QHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSF 600
Score = 128 (50.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 72/358 (20%), Positives = 151/358 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE-VD-------YRNHTLW-LKYAEVE-MKNKFIN 142
+++ +AK+EE+QK+F R R +++ AL+ + ++N+T++ K+ + +++ ++
Sbjct: 254 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVS 313
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP---DQQGWLSYI 199
R ++ V P W+ Y+ + E R+++ER + +P +++ W YI
Sbjct: 314 KRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYI 373
Query: 200 KFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE 259
+ Y +YE E++ + +R R VY+ ++E + +
Sbjct: 374 YLWVNY-------ALYE------------------ELEAKDPERTRQVYQASLELIPHKK 408
Query: 260 EA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKG-----------------RAEDLY 301
++++ +A+FE R K AR ++ PK R LY
Sbjct: 409 FTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLY 468
Query: 302 RKFVAFEKQ-------YGDREGIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEES 352
KF+ F + + + E I I R YE + + ++ +W YI E
Sbjct: 469 EKFLEFGPENCTSWIKFAELETILGDIERARAI-YELAISQPRLDMPEVLWKSYIDFEIE 527
Query: 353 VGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDA--GDMERTRDVYQ 408
ER R +Y + + +++ +WI++A +E G + + R +Y+
Sbjct: 528 QEETERTRNLYRQLLQRT----------QHVKVWISFAQFELSSGKEGSVAKCRQIYE 575
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 248/388 (63%), Positives = 291/388 (75%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP +QKITD EL DY+LRKRK F
Sbjct: 160 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 219
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES K+ RARS++ERAL+VDYRN TLWLKYAE+EMKN+
Sbjct: 220 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQ 279
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T LPRV+Q WYKY +MEEMLGNVAGARQ+FERWM W P++Q W SYI
Sbjct: 280 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 339
Query: 201 FELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260
FELRY EV+RAR IYERFV HP V WIKYA+FE K AR VYERAVE D+
Sbjct: 340 FELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHM 399
Query: 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320
E L+VAFA+FEE KE ER R IYK+ALD I K A++L++ + FEK++GDR GIED
Sbjct: 400 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDI 459
Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
IV KRRFQYE+EV+ NP NYD WFDY+RL ES E REVYERAIANVPP +EKR+W+
Sbjct: 460 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWK 519
Query: 381 RYIYLWINYALYEELDAGDMERTRDVYQ 408
RYIYLWINYALYEEL+A D ERTR VYQ
Sbjct: 520 RYIYLWINYALYEELEAKDPERTRQVYQ 547
Score = 270 (100.1 bits), Expect = 6.4e-21, P = 6.4e-21
Identities = 87/309 (28%), Positives = 150/309 (48%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
++K D + D + KR+ ++E+ ++ N W Y + ES + R V+ERA+
Sbjct: 447 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAI 506
Query: 119 E----VDYRNHT-----LWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYK 164
+ + H LW+ YA E ++ K R V+ ++ L+P ++W
Sbjct: 507 ANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWIL 566
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224
Y E N++ AR+ + P + + YI+ EL+ E +R R++YE+F++ P+
Sbjct: 567 YAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPE 626
Query: 225 VST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
T WIK+A+ E +G++DRAR +YE A+ + D E L+ ++ +FE +ETER R
Sbjct: 627 NCTSWIKFAELETILGDIDRARAIYELAISQPRLDMP-EVLWKSYIDFEIEQEETERTRN 685
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW 343
+Y+ L + ++ F FE G +EG + K R YE E K N +
Sbjct: 686 LYRRLLQRTQHVK---VWISFAQFELSSG-KEGS----LTKCRQIYE-EANKTMRNCEEK 736
Query: 344 FDYIRLEES 352
+ + L ES
Sbjct: 737 EERLMLLES 745
Score = 264 (98.0 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 89/341 (26%), Positives = 158/341 (46%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKYA++EE F AR V+ERA+E ++ + L++ +A+ E K R ++
Sbjct: 367 WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 426
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQI--------FERWMHWMP-DQQGWLSYI 199
A+ + + D +L+ Y E+ G+ G I +E + P + W Y+
Sbjct: 427 ALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 486
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
+ E E R++YER + P + WI YA +E ++ + +R R VY
Sbjct: 487 RLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVY 546
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ ++E + + ++++ +A+FE R K AR ++ PK + L++ ++
Sbjct: 547 QASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNK---LFKVYIEL 603
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q RE + R YE + P N W + LE +G+ +RAR +YE AI
Sbjct: 604 ELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAI 655
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ P + LW +Y +E ++ + ERTR++Y+
Sbjct: 656 SQ-PRLDMPEV------LWKSYIDFE-IEQEETERTRNLYR 688
Score = 236 (88.1 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 62/214 (28%), Positives = 107/214 (50%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+WI YA++E QK+ + AR ++ +N L+ Y E+E++ + + R ++++ +
Sbjct: 563 MWILYAQFEIRQKNLSLARRALGTSIGKCPKNK-LFKVYIELELQLREFDRCRKLYEKFL 621
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG++ AR I+E + MP+ W SYI FE+ E
Sbjct: 622 EFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEET 680
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEM---KMGEVDRARNVYERAVEKLADDEEAEQ-- 263
ER R +Y R +Q V WI +A+FE+ K G + + R +YE A + + + EE E+
Sbjct: 681 ERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERL 740
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR 296
L ++ FEE + K + + K R
Sbjct: 741 MLLESWRSFEEEFGTASDKERVDKLMPEKVKKRR 774
Score = 232 (86.7 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 80/346 (23%), Positives = 158/346 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE----VD----YRNHTLW-LKYAEVE-MKNKFIN 142
+++ +AK+EE+QK+F R R +++ AL+ D ++N+T++ K+ + +++ ++
Sbjct: 403 LYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVS 462
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM----------HWMPDQ 192
R ++ V P W+ Y+ + E R+++ER + HW
Sbjct: 463 KRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYI 522
Query: 193 QGWLSYIKFE-LRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDRARN 246
W++Y +E L + ER RQ+Y+ ++ H K + WI YA+FE++ + AR
Sbjct: 523 YLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARR 582
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
++ K ++ LF + E E + +E +R R +Y+ L+ P+ + KF
Sbjct: 583 ALGTSIGKCPKNK----LFKVYIELELQLREFDRCRKLYEKFLEFGPENCTS--WIKFAE 636
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEESVGNKERAREVYE 364
E GD + + R YE + + ++ +W YI E ER R +Y
Sbjct: 637 LETILGD--------IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYR 688
Query: 365 RAIANVPPAEEKRYWQRYIYLWINYALYEELDA--GDMERTRDVYQ 408
R + +++ +WI++A +E G + + R +Y+
Sbjct: 689 RLLQRT----------QHVKVWISFAQFELSSGKEGSLTKCRQIYE 724
Score = 219 (82.2 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 73/314 (23%), Positives = 140/314 (44%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKY 165
++ R +E ++ + N+ W Y + + R V++RA+ +P + + W +Y
Sbjct: 462 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRY 521
Query: 166 IHM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + RQ+++ + +P ++ W+ Y +FE+R + AR
Sbjct: 522 IYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLAR 581
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + PK + Y + E+++ E DR R +YE+ +E E ++ FAE E
Sbjct: 582 RALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLE--FGPENCTS-WIKFAELE 638
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
+ +RAR IY+ A+ E L++ ++ FE + + E + +R Q
Sbjct: 639 TILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLY--RRLLQRTQH 696
Query: 333 VRKNPMNYDIWFDYIRLEESVGNK---ERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
V+ +W + + E S G + + R++YE A + EEK + W ++
Sbjct: 697 VK-------VWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSF 749
Query: 390 ALYEELD-AGDMER 402
EE A D ER
Sbjct: 750 E--EEFGTASDKER 761
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 248/388 (63%), Positives = 291/388 (75%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP +QKITD EL DY+LRKRK F
Sbjct: 172 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 231
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES K+ RARS++ERAL+VDYRN TLWLKYAE+EMKN+
Sbjct: 232 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQ 291
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T LPRV+Q WYKY +MEEMLGNVAGARQ+FERWM W P++Q W SYI
Sbjct: 292 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 351
Query: 201 FELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260
FELRY EV+RAR IYERFV HP V WIKYA+FE K AR VYERAVE D+
Sbjct: 352 FELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHM 411
Query: 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320
E L+VAFA+FEE KE ER R IYK+ALD I K A++L++ + FEK++GDR GIED
Sbjct: 412 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDI 471
Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
IV KRRFQYE+EV+ NP NYD WFDY+RL ES E REVYERAIANVPP +EKR+W+
Sbjct: 472 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWK 531
Query: 381 RYIYLWINYALYEELDAGDMERTRDVYQ 408
RYIYLWINYALYEEL+A D ERTR VYQ
Sbjct: 532 RYIYLWINYALYEELEAKDPERTRQVYQ 559
Score = 270 (100.1 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 87/309 (28%), Positives = 150/309 (48%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
++K D + D + KR+ ++E+ ++ N W Y + ES + R V+ERA+
Sbjct: 459 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAI 518
Query: 119 E----VDYRNHT-----LWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYK 164
+ + H LW+ YA E ++ K R V+ ++ L+P ++W
Sbjct: 519 ANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWIL 578
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224
Y E N++ AR+ + P + + YI+ EL+ E +R R++YE+F++ P+
Sbjct: 579 YAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPE 638
Query: 225 VST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
T WIK+A+ E +G++DRAR +YE A+ + D E L+ ++ +FE +ETER R
Sbjct: 639 NCTSWIKFAELETILGDIDRARAIYELAISQPRLDMP-EVLWKSYIDFEIEQEETERTRN 697
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW 343
+Y+ L + ++ F FE G +EG + K R YE E K N +
Sbjct: 698 LYRRLLQRTQHVK---VWISFAQFELSSG-KEGS----LTKCRQIYE-EANKTMRNCEEK 748
Query: 344 FDYIRLEES 352
+ + L ES
Sbjct: 749 EERLMLLES 757
Score = 264 (98.0 bits), Expect = 3.8e-20, P = 3.8e-20
Identities = 89/341 (26%), Positives = 158/341 (46%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKYA++EE F AR V+ERA+E ++ + L++ +A+ E K R ++
Sbjct: 379 WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 438
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQI--------FERWMHWMP-DQQGWLSYI 199
A+ + + D +L+ Y E+ G+ G I +E + P + W Y+
Sbjct: 439 ALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 498
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
+ E E R++YER + P + WI YA +E ++ + +R R VY
Sbjct: 499 RLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVY 558
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ ++E + + ++++ +A+FE R K AR ++ PK + L++ ++
Sbjct: 559 QASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNK---LFKVYIEL 615
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q RE + R YE + P N W + LE +G+ +RAR +YE AI
Sbjct: 616 ELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAI 667
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ P + LW +Y +E ++ + ERTR++Y+
Sbjct: 668 SQ-PRLDMPEV------LWKSYIDFE-IEQEETERTRNLYR 700
Score = 236 (88.1 bits), Expect = 8.1e-17, P = 8.1e-17
Identities = 62/214 (28%), Positives = 107/214 (50%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+WI YA++E QK+ + AR ++ +N L+ Y E+E++ + + R ++++ +
Sbjct: 575 MWILYAQFEIRQKNLSLARRALGTSIGKCPKNK-LFKVYIELELQLREFDRCRKLYEKFL 633
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG++ AR I+E + MP+ W SYI FE+ E
Sbjct: 634 EFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEET 692
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEM---KMGEVDRARNVYERAVEKLADDEEAEQ-- 263
ER R +Y R +Q V WI +A+FE+ K G + + R +YE A + + + EE E+
Sbjct: 693 ERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERL 752
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR 296
L ++ FEE + K + + K R
Sbjct: 753 MLLESWRSFEEEFGTASDKERVDKLMPEKVKKRR 786
Score = 232 (86.7 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 80/346 (23%), Positives = 158/346 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE----VD----YRNHTLW-LKYAEVE-MKNKFIN 142
+++ +AK+EE+QK+F R R +++ AL+ D ++N+T++ K+ + +++ ++
Sbjct: 415 LYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVS 474
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM----------HWMPDQ 192
R ++ V P W+ Y+ + E R+++ER + HW
Sbjct: 475 KRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYI 534
Query: 193 QGWLSYIKFE-LRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDRARN 246
W++Y +E L + ER RQ+Y+ ++ H K + WI YA+FE++ + AR
Sbjct: 535 YLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARR 594
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
++ K ++ LF + E E + +E +R R +Y+ L+ P+ + KF
Sbjct: 595 ALGTSIGKCPKNK----LFKVYIELELQLREFDRCRKLYEKFLEFGPENCTS--WIKFAE 648
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEESVGNKERAREVYE 364
E GD + + R YE + + ++ +W YI E ER R +Y
Sbjct: 649 LETILGD--------IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYR 700
Query: 365 RAIANVPPAEEKRYWQRYIYLWINYALYEELDA--GDMERTRDVYQ 408
R + +++ +WI++A +E G + + R +Y+
Sbjct: 701 RLLQRT----------QHVKVWISFAQFELSSGKEGSLTKCRQIYE 736
Score = 219 (82.2 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 73/314 (23%), Positives = 140/314 (44%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKY 165
++ R +E ++ + N+ W Y + + R V++RA+ +P + + W +Y
Sbjct: 474 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRY 533
Query: 166 IHM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + RQ+++ + +P ++ W+ Y +FE+R + AR
Sbjct: 534 IYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLAR 593
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + PK + Y + E+++ E DR R +YE+ +E E ++ FAE E
Sbjct: 594 RALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLE--FGPENCTS-WIKFAELE 650
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
+ +RAR IY+ A+ E L++ ++ FE + + E + +R Q
Sbjct: 651 TILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLY--RRLLQRTQH 708
Query: 333 VRKNPMNYDIWFDYIRLEESVGNK---ERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
V+ +W + + E S G + + R++YE A + EEK + W ++
Sbjct: 709 VK-------VWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSF 761
Query: 390 ALYEELD-AGDMER 402
EE A D ER
Sbjct: 762 E--EEFGTASDKER 773
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 246/392 (62%), Positives = 292/392 (74%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP +QKITD EL DY+LRKRK F
Sbjct: 95 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 154
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES K+ RARS++ERAL+VDYRN TLWLKYAE+EMKN+
Sbjct: 155 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQ 214
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T LPRV+Q WYKY +MEEMLGN+AGARQ+FERWM W P++Q W SYI
Sbjct: 215 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWRPEEQAWHSYIN 274
Query: 201 FELRYNEVERARQIYERFVQC----HPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLA 256
FELRY EV+RAR IYER++ HP V WIKYA+FE K G AR VYERAVE
Sbjct: 275 FELRYKEVDRARTIYERYIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFG 334
Query: 257 DDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREG 316
D+ E L+VAFA+FEE KE ER R IYK+ALD I K A++L++ + FEK++GDR G
Sbjct: 335 DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRG 394
Query: 317 IEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376
IED IV KRRFQYE+EV+ NP NYD WFDY+RL ES E REVYERAIANVPP +EK
Sbjct: 395 IEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEK 454
Query: 377 RYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
R+W+RYIYLWINYALYEEL+A D ERTR VYQ
Sbjct: 455 RHWKRYIYLWINYALYEELEAKDPERTRQVYQ 486
Score = 273 (101.2 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 89/314 (28%), Positives = 151/314 (48%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
++K D + D + KR+ ++E+ ++ N W Y + ES + R V+ERA+
Sbjct: 386 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAI 445
Query: 119 E----VDYRNHT-----LWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYK 164
V + H LW+ YA E ++ K R V+ ++ L+P ++W
Sbjct: 446 ANVPPVQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLL 505
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224
Y E N+ AR+ + P + + YI+ EL+ E +R R++YE+F++ P+
Sbjct: 506 YAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE 565
Query: 225 VST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
T WIK+A+ E +G+++RAR +YE A+ + D E L+ ++ +FE +ETER R
Sbjct: 566 NCTSWIKFAELETILGDIERARAIYELAISQPRLDMP-EVLWKSYIDFEIEQEETERTRN 624
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW 343
+Y+ L + ++ F FE G +EG + K R YE E K N +
Sbjct: 625 LYRRLLQRTQHVK---VWISFAQFELSSG-KEGS----LAKCRQIYE-EANKTMRNCEEK 675
Query: 344 FDYIRLEESVGNKE 357
+ + L ES N E
Sbjct: 676 EERLMLLESWRNFE 689
Score = 259 (96.2 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 90/341 (26%), Positives = 158/341 (46%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKYA++EE F AR V+ERA+E ++ + L++ +A+ E K R ++
Sbjct: 306 WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 365
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQI--------FERWMHWMP-DQQGWLSYI 199
A+ + + + +L+ Y E+ G+ G I +E + P + W Y+
Sbjct: 366 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 425
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
+ E E R++YER + P V WI YA +E ++ + +R R VY
Sbjct: 426 RLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWINYALYEELEAKDPERTRQVY 485
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ ++E + + ++++ +A+FE R K AR ++ PK + L++ ++
Sbjct: 486 QASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGTSIGKCPKNK---LFKGYIEL 542
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q RE + R YE + P N W + LE +G+ ERAR +YE AI
Sbjct: 543 ELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAI 594
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ P + LW +Y +E ++ + ERTR++Y+
Sbjct: 595 SQ-PRLDMPEV------LWKSYIDFE-IEQEETERTRNLYR 627
Score = 227 (85.0 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 60/214 (28%), Positives = 106/214 (49%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ YA++E QK+ AR ++ +N L+ Y E+E++ + + R ++++ +
Sbjct: 502 MWLLYAQFEIRQKNLPFARRALGTSIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFL 560
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG++ AR I+E + MP+ W SYI FE+ E
Sbjct: 561 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEET 619
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEM---KMGEVDRARNVYERAVEKLADDEEAEQ-- 263
ER R +Y R +Q V WI +A+FE+ K G + + R +YE A + + + EE E+
Sbjct: 620 ERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERL 679
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR 296
L ++ FE+ + K + + K R
Sbjct: 680 MLLESWRNFEDEFGTASDKERVDKLMPEKVKKRR 713
Score = 225 (84.3 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 76/314 (24%), Positives = 140/314 (44%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKY 165
++ R +E ++ + N+ W Y + + R V++RA+ +P V + W +Y
Sbjct: 401 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRY 460
Query: 166 IHM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + RQ+++ + +P ++ WL Y +FE+R + AR
Sbjct: 461 IYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFAR 520
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + PK + Y + E+++ E DR R +YE+ +E E ++ FAE E
Sbjct: 521 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLE--FGPENCTS-WIKFAELE 577
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
+ ERAR IY+ A+ E L++ ++ FE + + E + +R Q
Sbjct: 578 TILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLY--RRLLQRTQH 635
Query: 333 VRKNPMNYDIWFDYIRLEESVGNK---ERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
V+ +W + + E S G + + R++YE A + EEK + W N+
Sbjct: 636 VK-------VWISFAQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRNF 688
Query: 390 ALYEELD-AGDMER 402
+E A D ER
Sbjct: 689 E--DEFGTASDKER 700
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
Identities = 234/388 (60%), Positives = 294/388 (75%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
K+P+ +VKNK PA +QIT PP KQKI+D ELADY+ RKRK F
Sbjct: 6 KMPKVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISDPAELADYQQRKRKTF 65
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED +R+ R WIKYA+WEE Q++ RARS+WERAL+ ++RN TLWLKYAE+EMKNK
Sbjct: 66 EDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQ 125
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRAVT++PRV+Q WYKY +MEEML NVAGARQ+FERWM W P++Q W +Y+
Sbjct: 126 VNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVN 185
Query: 201 FELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260
FELRY E++RAR+IYERFV HP V WIK+A+FE G + +R V+ERAVE DD
Sbjct: 186 FELRYKEIDRAREIYERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYI 245
Query: 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320
E+LF+AFA FEE KE +RAR IYK+ALDH+PK R ++L++ + EK+YGDR GIED
Sbjct: 246 EERLFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDV 305
Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
IV KR++QYE EV NP NYD WFDY+RL E+ G++++ RE YERAI+NVPPA EK +W+
Sbjct: 306 IVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWR 365
Query: 381 RYIYLWINYALYEELDAGDMERTRDVYQ 408
RYIYLWINYALYEEL+A D ERTR +Y+
Sbjct: 366 RYIYLWINYALYEELEAEDAERTRQIYK 393
Score = 276 (102.2 bits), Expect = 6.6e-22, P = 6.6e-22
Identities = 92/360 (25%), Positives = 164/360 (45%)
Query: 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKY 131
R R+ +E + V + WIK+A++EES + +R V+ERA+E DY L++ +
Sbjct: 195 RAREIYERFVY-VHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAF 253
Query: 132 AEVEMKNKFINHARNVWDRAVTLLP--RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM 189
A E K + AR ++ A+ LP R +L+ Y E+ G+ AG + +
Sbjct: 254 ARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQ 313
Query: 190 PDQQ---------GWLSYIKFELRYNEVERARQIYERFVQCHPKVST----------WIK 230
+Q+ W Y++ + ++ R+ YER + P + WI
Sbjct: 314 YEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWIN 373
Query: 231 YAKFE-MKMGEVDRARNVYERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFA 288
YA +E ++ + +R R +Y+ +E + + +L++ +A+FE RCKE +RAR A
Sbjct: 374 YALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLA 433
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
+ P+ + L+R ++ E Q + E + R YE + P N W +
Sbjct: 434 IGMCPRDK---LFRGYIDLEIQLREFE--------RCRMLYEKFLEFGPENCVTWMKFAE 482
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
LE +G+ +RAR ++E A+ + W+ YI E+ G+ E R +Y+
Sbjct: 483 LENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDF--------EVALGETELARQLYE 534
Score = 249 (92.7 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 75/272 (27%), Positives = 132/272 (48%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
++K D + D + KRK ++E + N W Y + E++ D ++ R +ERA+
Sbjct: 293 EKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAI 352
Query: 119 -------EVDY-RNHT-LWLKYAEVE-MKNKFINHARNVWDRAVTLLPR----VDQLWYK 164
E ++ R + LW+ YA E ++ + R ++ + L+P +LW
Sbjct: 353 SNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLL 412
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224
Y E + AR+ + P + + YI E++ E ER R +YE+F++ P+
Sbjct: 413 YAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPE 472
Query: 225 -VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
TW+K+A+ E +G+ DRAR ++E AV++ D E L+ A+ +FE ETE AR
Sbjct: 473 NCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMP-ELLWKAYIDFEVALGETELARQ 531
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEK--QYGD 313
+Y+ L+ + ++ F FE +GD
Sbjct: 532 LYERLLERTQHVK---VWMSFAKFEMGLSHGD 560
Score = 233 (87.1 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 86/334 (25%), Positives = 160/334 (47%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHT--LWLKYAEVEMK--------NKFIN 142
++I +A++EE QK+ +RAR +++ AL+ ++ T L+ Y + E K + ++
Sbjct: 249 LFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVS 308
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP--DQQG------ 194
+ +++ V P W+ Y+ + E G+ R+ +ER + +P +++
Sbjct: 309 KRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYI 368
Query: 195 --WLSYIKFE-LRYNEVERARQIYERFVQCHP-KVST----WIKYAKFEMKMGEVDRARN 246
W++Y +E L + ER RQIY+ ++ P K T W+ YA+FE++ E+ RAR
Sbjct: 369 YLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARK 428
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
A+ D+ LF + + E + +E ER R +Y+ L+ P+ + KF
Sbjct: 429 ALGLAIGMCPRDK----LFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVT--WMKFAE 482
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERA 366
E GD + AI F+ + + M +W YI E ++G E AR++YER
Sbjct: 483 LENLLGDTDRAR-AI-----FELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERL 536
Query: 367 IANVPPAEEKRYWQRYIYLWINYALYEE-LDAGD 399
+ +++ +W+++A +E L GD
Sbjct: 537 LERT----------QHVKVWMSFAKFEMGLSHGD 560
Score = 227 (85.0 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 65/219 (29%), Positives = 111/219 (50%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ YA++E K+ RAR A+ + R+ L+ Y ++E++ + R ++++ +
Sbjct: 409 LWLLYAQFEIRCKELQRARKALGLAIGMCPRDK-LFRGYIDLEIQLREFERCRMLYEKFL 467
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG+ AR IFE + MP+ W +YI FE+ E
Sbjct: 468 EFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELL-WKAYIDFEVALGET 526
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEMKM--GE--------VDRARNVYERAVE---KL 255
E ARQ+YER ++ V W+ +AKFEM + G+ V AR +YERA E +L
Sbjct: 527 ELARQLYERLLERTQHVKVWMSFAKFEMGLSHGDSGPDAELNVQLARRIYERANEMLRQL 586
Query: 256 ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294
D E L A+ +FE +++ + + +D +P+
Sbjct: 587 GDKESRVLLLEAWRDFERDASDSQEMQKV----MDKMPR 621
Score = 199 (75.1 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 72/317 (22%), Positives = 141/317 (44%)
Query: 114 WERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ--LWYKYIHM--- 168
+E+ + + N+ W Y + + R ++RA++ +P ++ W +YI++
Sbjct: 314 YEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWIN 373
Query: 169 ----EEMLGNVAG-ARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERARQIYERF 218
EE+ A RQI++ + +P +Q WL Y +FE+R E++RAR+
Sbjct: 374 YALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLA 433
Query: 219 VQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET 278
+ P+ + Y E+++ E +R R +YE+ +E E ++ FAE E +T
Sbjct: 434 IGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEF---GPENCVTWMKFAELENLLGDT 490
Query: 279 ERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM 338
+RAR I++ A+ E L++ ++ FE G+ E R YE + +
Sbjct: 491 DRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETE--------LARQLYE-RLLERTQ 541
Query: 339 NYDIWFDYIRLEESVG----------NKERAREVYERAIANVPPAEEKRYWQRYIYLWIN 388
+ +W + + E + N + AR +YERA + +K + W +
Sbjct: 542 HVKVWMSFAKFEMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLLLEAWRD 601
Query: 389 YALYEELDAGDMERTRD 405
+ + D+ +M++ D
Sbjct: 602 FER-DASDSQEMQKVMD 617
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 1303 (463.7 bits), Expect = 6.2e-133, P = 6.2e-133
Identities = 237/389 (60%), Positives = 296/389 (76%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP KQKITD EL DY+L+KRK F
Sbjct: 10 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPKQKITDKEELNDYKLKKRKGF 69
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES ++ R+RS++ERAL+VD+RN TLWLKYAE+EMKN+
Sbjct: 70 EDNIRKNRTVISNWIKYAQWEESLQEVQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQ 129
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T+LPRV+Q WYKY +MEEMLGN+AG RQ+FERWM W P++Q W SYI
Sbjct: 130 VNHARNIWDRAITILPRVNQFWYKYTYMEEMLGNIAGCRQVFERWMEWEPEEQAWHSYIN 189
Query: 201 FELRYNEVERARQIYER-FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE 259
FELRY EV++AR IYE+ V HP+V WIKYA FE K G V R R V+ERAVE +++
Sbjct: 190 FELRYKEVDKARSIYEKALVMVHPEVKNWIKYAHFEEKHGYVARGRKVFERAVEFFGEEQ 249
Query: 260 EAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIED 319
+E L+VAFA FEE+ KE ER R IYK+ALD IPK +A++L++ + FEK++GDR GIED
Sbjct: 250 VSENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGDRRGIED 309
Query: 320 AIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
IV KRRFQYE+EV+ NP NYD WFDY+RL ES + + REVYERAIAN+PP +EKR+W
Sbjct: 310 VIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHW 369
Query: 380 QRYIYLWINYALYEELDAGDMERTRDVYQ 408
+RYIYLWINYALYEEL+ D ERTR VY+
Sbjct: 370 RRYIYLWINYALYEELEVKDPERTRQVYK 398
Score = 259 (96.2 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 83/325 (25%), Positives = 157/325 (48%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
+++ D + D + KR+ ++E+ ++ N W Y + ES D + R V+ERA+
Sbjct: 298 EKRFGDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAI 357
Query: 119 E----VDYRNHT-----LWLKYA---EVEMKNKFINHARNVWDRAVTLLPRVD----QLW 162
+ + H LW+ YA E+E+K+ R V+ + L+P ++W
Sbjct: 358 ANIPPIQEKRHWRRYIYLWINYALYEELEVKDP--ERTRQVYKACLELIPHKKFTFAKIW 415
Query: 163 YKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCH 222
Y E N+ AR+ + P + + YI+ EL+ E +R R++YE++++
Sbjct: 416 LLYGQFEIRQKNLQNARRGLGTAIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYLEFS 475
Query: 223 PK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERA 281
P+ +TWIK+A+ E +G+ DR+R ++E A+ + D E L+ ++ +FE +E +
Sbjct: 476 PENCTTWIKFAELETILGDTDRSRAIFELAIGQPRLDMP-EVLWKSYIDFEIEQEEYDNT 534
Query: 282 RCIYKFALDHIPKGRAEDLYRKF-VAFEKQ---YGDREGIEDAIVGKRRFQYEDEVRKNP 337
R +YK L + Y +F ++ + + R+ E+A G + + ++E
Sbjct: 535 RGLYKRLLQRTQHVKVWISYAQFELSIDTEDRVQRCRQVYEEANKGMQNCEEKEE---RL 591
Query: 338 MNYDIWFDYIRLEESVGNKERAREV 362
M + W DY S +KER R++
Sbjct: 592 MLLESWRDYEEEFGSFTHKERVRKL 616
Score = 238 (88.8 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 85/360 (23%), Positives = 159/360 (44%)
Query: 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKY 131
+ R +E + V WIKYA +EE R R V+ERA+E + + L++ +
Sbjct: 199 KARSIYEKALVMVHPEVKNWIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAF 258
Query: 132 AEVEMKNKFINHARNVWDRAVTLLPR--VDQLWYKYIHMEEMLGNVAGARQI-------- 181
A E K K R ++ A+ +P+ +L+ Y E+ G+ G +
Sbjct: 259 ARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGDRRGIEDVIVSKRRFQ 318
Query: 182 FERWMHWMP-DQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVST----------WIK 230
+E + P + W Y++ + + R++YER + P + WI
Sbjct: 319 YEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWIN 378
Query: 231 YAKFE-MKMGEVDRARNVYERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFA 288
YA +E +++ + +R R VY+ +E + + ++++ + +FE R K + AR A
Sbjct: 379 YALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGLGTA 438
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
+ PK + L++ ++ E Q RE + R YE + +P N W +
Sbjct: 439 IGKCPKNK---LFKGYIELELQL--RE------FDRCRKLYEKYLEFSPENCTTWIKFAE 487
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
LE +G+ +R+R ++E AI P + LW +Y +E ++ + + TR +Y+
Sbjct: 488 LETILGDTDRSRAIFELAIGQ-PRLDMPEV------LWKSYIDFE-IEQEEYDNTRGLYK 539
Score = 230 (86.0 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 73/304 (24%), Positives = 143/304 (47%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKY 165
++ R +E ++ + N+ W Y + + + R V++RA+ +P + + W +Y
Sbjct: 313 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRY 372
Query: 166 IHM-------EEM-LGNVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + + RQ+++ + +P ++ WL Y +FE+R ++ AR
Sbjct: 373 IYLWINYALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNAR 432
Query: 213 Q-IYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ + +C PK + Y + E+++ E DR R +YE+ +E E ++ FAE
Sbjct: 433 RGLGTAIGKC-PKNKLFKGYIELELQLREFDRCRKLYEKYLEF---SPENCTTWIKFAEL 488
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFE---KQYGDREGIEDAIVGKRRFQ 328
E +T+R+R I++ A+ E L++ ++ FE ++Y + G+ KR Q
Sbjct: 489 ETILGDTDRSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLY-----KRLLQ 543
Query: 329 YEDEVRKNPMNYDIWFDYIRLEESVGNKERA---REVYERAIANVPPAEEKRYWQRYIYL 385
V+ +W Y + E S+ ++R R+VYE A + EEK +
Sbjct: 544 RTQHVK-------VWISYAQFELSIDTEDRVQRCRQVYEEANKGMQNCEEKEERLMLLES 596
Query: 386 WINY 389
W +Y
Sbjct: 597 WRDY 600
Score = 226 (84.6 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 63/220 (28%), Positives = 107/220 (48%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ Y ++E QK+ AR A+ +N L+ Y E+E++ + + R ++++ +
Sbjct: 414 IWLLYGQFEIRQKNLQNARRGLGTAIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKYL 472
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG+ +R IFE + MP+ W SYI FE+ E
Sbjct: 473 EFSPENCTTWIKFAELETILGDTDRSRAIFELAIGQPRLDMPEVL-WKSYIDFEIEQEEY 531
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEMKMG---EVDRARNVYERAVEKLADDEEAEQ-- 263
+ R +Y+R +Q V WI YA+FE+ + V R R VYE A + + + EE E+
Sbjct: 532 DNTRGLYKRLLQRTQHVKVWISYAQFELSIDTEDRVQRCRQVYEEANKGMQNCEEKEERL 591
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR---AED 299
L ++ ++EE + K + + K R AED
Sbjct: 592 MLLESWRDYEEEFGSFTHKERVRKLLPEKVKKRRKITAED 631
Score = 139 (54.0 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 78/381 (20%), Positives = 161/381 (42%)
Query: 72 YRLRKRKEFEDLIR---RVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VD------ 121
Y R RK FE + + + +++ +A++EE QK+F R R +++ AL+ +
Sbjct: 230 YVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQE 289
Query: 122 -YRNHTLWLK-YAEVE-MKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 178
++N+T++ K + + +++ ++ R ++ V P W+ Y+ + E +
Sbjct: 290 LFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTV 349
Query: 179 RQIFERWMHWMP---DQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFE 235
R+++ER + +P +++ W YI + Y +YE E
Sbjct: 350 REVYERAIANIPPIQEKRHWRRYIYLWINY-------ALYE------------------E 384
Query: 236 MKMGEVDRARNVYERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPK 294
+++ + +R R VY+ +E + + ++++ + +FE R K + AR A+ PK
Sbjct: 385 LEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGLGTAIGKCPK 444
Query: 295 G-----------------RAEDLYRKFVAFEKQ-------YGDREGI-EDAIVGKRRFQY 329
R LY K++ F + + + E I D + F+
Sbjct: 445 NKLFKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDTDRSRAIFEL 504
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
+ M +W YI E + R +Y+R + +++ +WI+Y
Sbjct: 505 AIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQRT----------QHVKVWISY 554
Query: 390 ALYE-ELDAGD-MERTRDVYQ 408
A +E +D D ++R R VY+
Sbjct: 555 AQFELSIDTEDRVQRCRQVYE 575
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 245/389 (62%), Positives = 290/389 (74%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP +QKITD EL DY+LRKRK F
Sbjct: 27 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDVEELNDYKLRKRKTF 86
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES K+ RARS++ERAL+VDYRN TLWLKYAE+EMKN+
Sbjct: 87 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQ 146
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T LPRV+Q WYKY +MEEMLGNVAG+RQ+FERWM W P++Q W SYI
Sbjct: 147 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGSRQVFERWMEWQPEEQAWHSYIN 206
Query: 201 FELRYNEVERARQIY-ERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE 259
FELRY EV+RAR IY V HP V WIKYA+FE K AR VYERAVE ++
Sbjct: 207 FELRYKEVDRARTIYIALLVIVHPDVKNWIKYARFEEKHCYFAHARKVYERAVEFFGEEH 266
Query: 260 EAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIED 319
E L+VAFA+FEE KE ER R IYK+ALD IPK A++L++ + FEK++GDR GIED
Sbjct: 267 MDEHLYVAFAKFEENQKEFERVRVIYKYALDRIPKQDAQNLFKNYTIFEKKFGDRRGIED 326
Query: 320 AIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
IV KRRFQYE+EV+ NP NYD WFDY+RL ES + E REVYERAIANVPP +EKRYW
Sbjct: 327 IIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYW 386
Query: 380 QRYIYLWINYALYEELDAGDMERTRDVYQ 408
+RYIYLWINYALYEEL+A D ERTR VYQ
Sbjct: 387 KRYIYLWINYALYEELEAKDPERTRQVYQ 415
Score = 267 (99.0 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 88/309 (28%), Positives = 145/309 (46%)
Query: 60 KQKITDSTELADYRLRKRK-EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118
++K D + D + KR+ ++E+ ++ N W Y + ES D R V+ERA+
Sbjct: 315 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAI 374
Query: 119 -------EVDY--RNHTLWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYK 164
E Y R LW+ YA E ++ K R V+ + LLP ++W
Sbjct: 375 ANVPPIQEKRYWKRYIYLWINYALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLL 434
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224
Y E N+ AR+ + P + + YI+ EL+ E +R R++YE+F++ P+
Sbjct: 435 YAQFEIRQKNLPLARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFAPE 494
Query: 225 VST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
T WIK+A+ E +G++DRAR +YE A+ + D E L+ ++ +FE +E E+ R
Sbjct: 495 NCTSWIKFAELETILGDIDRARAIYELAISQPRLDMP-EVLWKSYIDFEIEQEEYEKTRN 553
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW 343
+Y+ L + ++ F FE G E + K R YE E K N +
Sbjct: 554 LYRRLLQRTQHVK---VWISFAQFELSAGKEESLS-----KCRQIYE-EANKAMRNCEEK 604
Query: 344 FDYIRLEES 352
+ + L ES
Sbjct: 605 EERVMLLES 613
Score = 260 (96.6 bits), Expect = 8.3e-20, P = 8.3e-20
Identities = 89/341 (26%), Positives = 157/341 (46%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKYA++EE F AR V+ERA+E ++ + L++ +A+ E K R ++
Sbjct: 235 WIKYARFEEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKY 294
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQI--------FERWMHWMP-DQQGWLSYI 199
A+ +P+ D L+ Y E+ G+ G I +E + P + W Y+
Sbjct: 295 ALDRIPKQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 354
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
+ + E R++YER + P + WI YA +E ++ + +R R VY
Sbjct: 355 RLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEELEAKDPERTRQVY 414
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ +E L + ++++ +A+FE R K AR ++ PK + L++ ++
Sbjct: 415 QACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARRALGTSIGKCPKNK---LFKGYIEL 471
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q RE + R YE + P N W + LE +G+ +RAR +YE AI
Sbjct: 472 ELQL--RE------FDRCRKLYEKFLEFAPENCTSWIKFAELETILGDIDRARAIYELAI 523
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ P + LW +Y +E ++ + E+TR++Y+
Sbjct: 524 SQ-PRLDMPEV------LWKSYIDFE-IEQEEYEKTRNLYR 556
Score = 234 (87.4 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 64/220 (29%), Positives = 109/220 (49%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ YA++E QK+ AR ++ +N L+ Y E+E++ + + R ++++ +
Sbjct: 431 IWLLYAQFEIRQKNLPLARRALGTSIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFL 489
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG++ AR I+E + MP+ W SYI FE+ E
Sbjct: 490 EFAPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEEY 548
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEMKMGE---VDRARNVYERAVEKLADDEEAEQ-- 263
E+ R +Y R +Q V WI +A+FE+ G+ + + R +YE A + + + EE E+
Sbjct: 549 EKTRNLYRRLLQRTQHVKVWISFAQFELSAGKEESLSKCRQIYEEANKAMRNCEEKEERV 608
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR---AED 299
L ++ FEE I K + I K R AED
Sbjct: 609 MLLESWKTFEEEFGTDSTKERIEKLMPEKIKKRRKLQAED 648
Score = 228 (85.3 bits), Expect = 4.9e-16, P = 4.9e-16
Identities = 81/347 (23%), Positives = 162/347 (46%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE----VD----YRNHTLW-LKYAEVE-MKNKFIN 142
+++ +AK+EE+QK+F R R +++ AL+ D ++N+T++ K+ + +++ ++
Sbjct: 271 LYVAFAKFEENQKEFERVRVIYKYALDRIPKQDAQNLFKNYTIFEKKFGDRRGIEDIIVS 330
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-------- 194
R ++ V P W+ Y+ + E + R+++ER + +P Q
Sbjct: 331 KRRFQYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYI 390
Query: 195 --WLSYIKFE-LRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDRARN 246
W++Y +E L + ER RQ+Y+ ++ H K + W+ YA+FE++ + AR
Sbjct: 391 YLWINYALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARR 450
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
++ K ++ LF + E E + +E +R R +Y+ L+ P+ + KF
Sbjct: 451 ALGTSIGKCPKNK----LFKGYIELELQLREFDRCRKLYEKFLEFAPENCTS--WIKFAE 504
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEESVGNKERAREVYE 364
E GD + + R YE + + ++ +W YI E E+ R +Y
Sbjct: 505 LETILGD--------IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEEYEKTRNLYR 556
Query: 365 RAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDME---RTRDVYQ 408
R + +++ +WI++A +E L AG E + R +Y+
Sbjct: 557 RLLQRT----------QHVKVWISFAQFE-LSAGKEESLSKCRQIYE 592
Score = 225 (84.3 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 74/315 (23%), Positives = 145/315 (46%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ--LWYKY 165
++ R +E ++ + N+ W Y + + R V++RA+ +P + + W +Y
Sbjct: 330 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRY 389
Query: 166 IHM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + RQ+++ + +P ++ WL Y +FE+R + AR
Sbjct: 390 IYLWINYALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLAR 449
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + PK + Y + E+++ E DR R +YE+ +E ++ + ++ FAE E
Sbjct: 450 RALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFAPENCTS---WIKFAELE 506
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
+ +RAR IY+ A+ E L++ ++ FE IE K R Y
Sbjct: 507 TILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFE--------IEQEEYEKTRNLYRRL 558
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKE---RAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
+++ + +W + + E S G +E + R++YE A + EEK +R + L ++
Sbjct: 559 LQRT-QHVKVWISFAQFELSAGKEESLSKCRQIYEEANKAMRNCEEKE--ER-VMLLESW 614
Query: 390 ALYEELDAGDMERTR 404
+EE D + R
Sbjct: 615 KTFEEEFGTDSTKER 629
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 244/393 (62%), Positives = 289/393 (73%)
Query: 22 KLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPP-KQKITDSTELADYRLRKRKEF 80
++P+ +VKNK PA +QIT PP +QKITD EL DY+LRKRK F
Sbjct: 116 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 175
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
ED IR+ R WIKYA+WEES K+ RARS++ERAL+VDYRN TLWLKYAE+EMKN+
Sbjct: 176 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQ 235
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
+NHARN+WDRA+T LPRV+Q WYKY +MEEMLGN+AGARQ+FERWM W P++Q W SYI
Sbjct: 236 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYIN 295
Query: 201 FELRYNEVERARQIY-----ERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKL 255
FELRY EV+RAR IY V HP V WIKYA+FE K G AR VYERAVE
Sbjct: 296 FELRYKEVDRARTIYYFLNSPELVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFF 355
Query: 256 ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDRE 315
D+ E L+VAFA+FEE KE ER R IYK+ALD I K A++L++ + FEK++GDR
Sbjct: 356 GDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRR 415
Query: 316 GIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375
GIED IV KRRFQYE+EV+ NP NYD WFDY+RL ES E REVYERAIANVPP +E
Sbjct: 416 GIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQE 475
Query: 376 KRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
KR+W+RYIYLW+NYALYEEL+A D ERTR VYQ
Sbjct: 476 KRHWKRYIYLWVNYALYEELEAKDPERTRQVYQ 508
Score = 251 (93.4 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 86/341 (25%), Positives = 158/341 (46%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKYA++EE F AR V+ERA+E ++ + L++ +A+ E K R ++
Sbjct: 328 WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 387
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQI--------FERWMHWMP-DQQGWLSYI 199
A+ + + + +L+ Y E+ G+ G I +E + P + W Y+
Sbjct: 388 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL 447
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
+ E E R++YER + P + W+ YA +E ++ + +R R VY
Sbjct: 448 RLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVY 507
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ ++E + + ++++ +A+FE R K + + ++ PK + L++ ++
Sbjct: 508 QASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVSLLGTSIGKCPKNK---LFKGYIEL 564
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E Q RE + R YE + P N W + LE +G+ ERAR +YE AI
Sbjct: 565 ELQL--RE------FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAI 616
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ P + LW +Y +E ++ + ERTR++Y+
Sbjct: 617 SQ-PRLDMPEV------LWKSYIDFE-IEQEETERTRNLYR 649
Score = 222 (83.2 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 59/214 (27%), Positives = 107/214 (50%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ YA++E QK+ + S+ ++ +N L+ Y E+E++ + + R ++++ +
Sbjct: 524 MWLLYAQFEIRQKNLPVSVSLLGTSIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFL 582
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W K+ +E +LG++ AR I+E + MP+ W SYI FE+ E
Sbjct: 583 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEET 641
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEM---KMGEVDRARNVYERAVEKLADDEEAEQ-- 263
ER R +Y R +Q V WI +A+FE+ K G + + R +YE A + + + EE E+
Sbjct: 642 ERTRNLYRRLLQRTQHVKVWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERL 701
Query: 264 -LFVAFAEFEERCKETERARCIYKFALDHIPKGR 296
L ++ FE+ + K + + K R
Sbjct: 702 MLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRR 735
Score = 217 (81.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 79/346 (22%), Positives = 160/346 (46%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE-VD-------YRNHTLW-LKYAEVE-MKNKFIN 142
+++ +AK+EE+QK+F R R +++ AL+ + ++N+T++ K+ + +++ ++
Sbjct: 364 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVS 423
Query: 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM----------HWMPDQ 192
R ++ V P W+ Y+ + E R+++ER + HW
Sbjct: 424 KRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYI 483
Query: 193 QGWLSYIKFE-LRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDRARN 246
W++Y +E L + ER RQ+Y+ ++ H K + W+ YA+FE++ + + +
Sbjct: 484 YLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVS 543
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
+ ++ K ++ LF + E E + +E +R R +Y+ L+ P+ + KF
Sbjct: 544 LLGTSIGKCPKNK----LFKGYIELELQLREFDRCRKLYEKFLEFGPENCTS--WIKFAE 597
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEESVGNKERAREVYE 364
E GD IE A R YE + + ++ +W YI E ER R +Y
Sbjct: 598 LETILGD---IERA-----RAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYR 649
Query: 365 RAIANVPPAEEKRYWQRYIYLWINYALYE--ELDAGDMERTRDVYQ 408
R + +++ +WI++A +E G + + R +Y+
Sbjct: 650 RLLQRT----------QHVKVWISFAQFELSSRKEGSLAKCRQIYE 685
Score = 204 (76.9 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 67/300 (22%), Positives = 133/300 (44%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKY 165
++ R +E ++ + N+ W Y + + R V++RA+ +P + + W +Y
Sbjct: 423 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRY 482
Query: 166 IHM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERAR 212
I++ EE+ + RQ+++ + +P ++ WL Y +FE+R + +
Sbjct: 483 IYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSV 542
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + PK + Y + E+++ E DR R +YE+ +E E ++ FAE E
Sbjct: 543 SLLGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLE--FGPENCTS-WIKFAELE 599
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
+ ERAR IY+ A+ E L++ ++ FE + + E + +R Q
Sbjct: 600 TILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLY--RRLLQRTQH 657
Query: 333 VRKNPMNYDIWFDYIRLEESV---GNKERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389
V+ +W + + E S G+ + R++YE A + EEK + W ++
Sbjct: 658 VK-------VWISFAQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSF 710
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 222/382 (58%), Positives = 285/382 (74%)
Query: 27 TRVKNKTPAPIQITXXXXXXXXXXXXXXX-XXPPKQKITDSTELADYRLRKRKEFEDLIR 85
++VKNK+ AP+QIT PPKQ ITD EL DYRLRKR+++E L+
Sbjct: 10 SKVKNKSAAPVQITAEQILRVAHENQQTLPKAPPKQVITDQEELEDYRLRKRQQYESLLG 69
Query: 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR 145
R R ++IKYA WEESQKD RARSV+ER L++D+R T+W+KYAE+EMKNK IN AR
Sbjct: 70 RNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLAR 129
Query: 146 NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRY 205
N+WDRAV LLPRV QLW+KY ME+MLGN AR IFERWM W P+ Q W SY+KFE R
Sbjct: 130 NIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQRL 189
Query: 206 NEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
E R I+E+++ HP + TWIKY KFE ++G ++ AR +++RA+E L +D EQLF
Sbjct: 190 KLFENTRLIFEKYILVHPYIKTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQLF 249
Query: 266 VAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325
+AFA+FEE+ KE ERAR IYK+A+DH+PK RA+DL+ F FEKQ+GDR GIED ++GK+
Sbjct: 250 IAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDRIGIEDVVLGKK 309
Query: 326 RFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
RFQYE+E++KN NYDIWFDY+++EE G E+ RE+YER+I N+PP EK++W+RYIYL
Sbjct: 310 RFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYL 369
Query: 386 WINYALYEELDAGDMERTRDVY 407
WINYAL+EEL + DMER R VY
Sbjct: 370 WINYALFEELISKDMERARSVY 391
Score = 293 (108.2 bits), Expect = 6.1e-25, P = 6.1e-25
Identities = 86/312 (27%), Positives = 156/312 (50%)
Query: 101 EESQKDFN-RARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD 159
+E +D+ R R +E L + + +++KYA E K + AR+V++R + + R+
Sbjct: 50 QEELEDYRLRKRQQYESLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIP 109
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERF 218
+W KY ME N+ AR I++R + +P Q W Y E AR I+ER+
Sbjct: 110 TVWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERW 169
Query: 219 VQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET 278
+Q P+ W Y KFE ++ + R ++E+ + L + ++ + +FEER
Sbjct: 170 MQWKPEPQAWNSYLKFEQRLKLFENTRLIFEKYI--LV--HPYIKTWIKYTKFEERLGNI 225
Query: 279 ERARCIYKFALDHIPK-GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYE-DEVRKN 336
E AR I++ A++ + + G E L+ F FE++Y + IE A V ++Y D V K+
Sbjct: 226 ENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKE---IERARV---IYKYAIDHVPKS 279
Query: 337 PMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELD 396
D++ + E+ G++ +V E K+ + Y +W +Y EE++
Sbjct: 280 RAK-DLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYD-IWFDYLKMEEIN 337
Query: 397 AGDMERTRDVYQ 408
G++E+TR++Y+
Sbjct: 338 -GEIEKTREIYE 348
Score = 283 (104.7 bits), Expect = 5.1e-23, P = 5.1e-23
Identities = 87/316 (27%), Positives = 153/316 (48%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIKY K+EE + AR++++RA+E D + L++ +A+ E K K I AR ++
Sbjct: 212 WIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKY 271
Query: 151 AVTLLP--RVDQLWYKYIHMEEMLGNVAGARQIF---ERWMHWMPDQQG------WLSYI 199
A+ +P R L+ + + E+ G+ G + +R+ + ++ W Y+
Sbjct: 272 AIDHVPKSRAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYL 331
Query: 200 KFELRYNEVERARQIYERFV--------QCHPK--VSTWIKYAKFEMKMG-EVDRARNVY 248
K E E+E+ R+IYER + + H K + WI YA FE + +++RAR+VY
Sbjct: 332 KMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMERARSVY 391
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
++ + E + ++++ +A FE R ++AR IY A+ PK + D Y +
Sbjct: 392 SECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQAIGRNPKSKIFDQY---IHL 448
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E + G+ + + R YE + P N D W + +LE +G RAR ++E AI
Sbjct: 449 EIELGNFDRV--------RTLYEKYLEIMPDNCDAWCKFAQLETELGETVRARAIFELAI 500
Query: 368 ANVPPAEEKRYWQRYI 383
+ W+ +I
Sbjct: 501 QQPNLDRPEVVWKDFI 516
Score = 242 (90.2 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 62/268 (23%), Positives = 137/268 (51%)
Query: 109 RARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKYI 166
+ R +E ++ + +N+ +W Y ++E N I R +++R++ LP ++ W +YI
Sbjct: 308 KKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYI 367
Query: 167 HM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERARQ 213
++ EE++ ++ AR ++ + +P ++ W+ Y FE+R +++AR
Sbjct: 368 YLWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARL 427
Query: 214 IYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEE 273
IY + + +PK + +Y E+++G DR R +YE+ +E + D+ +A + FA+ E
Sbjct: 428 IYGQAIGRNPKSKIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDA---WCKFAQLET 484
Query: 274 RCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV 333
ET RAR I++ A+ R E +++ F+ E Q + ++ ++ + + V
Sbjct: 485 ELGETVRARAIFELAIQQPNLDRPEVVWKDFIDSEIQLKQFDFVKQLY--RKLLEKTNHV 542
Query: 334 RKNPMNYDIWFDYIRLEESVGNKERARE 361
+ +W +I+ S+ +K++ ++
Sbjct: 543 K-------VWIGFIKFVHSIKDKQQQKQ 563
Score = 154 (59.3 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 54/265 (20%), Positives = 120/265 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+WI YA +E Q + ++AR ++ +A+ + ++ ++ +Y +E++ + R ++++ +
Sbjct: 408 IWILYANFEIRQLNLDKARLIYGQAIGRNPKSK-IFDQYIHLEIELGNFDRVRTLYEKYL 466
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEV 208
++P W K+ +E LG AR IFE + P+ + W +I E++ +
Sbjct: 467 EIMPDNCDAWCKFAQLETELGETVRARAIFELAIQ-QPNLDRPEVVWKDFIDSEIQLKQF 525
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAF 268
+ +Q+Y + ++ V WI + KF + + + + ++ E D ++
Sbjct: 526 DFVKQLYRKLLEKTNHVKVWIGFIKFVHSIKDKQQQKQRQQQQEED-GDSNTTKKDGGDD 584
Query: 269 AEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ 328
++ K T +L + K L + FE+ +G++E + + ++
Sbjct: 585 DNNDDINKPTREIFIEAHKSLSNSDKEERLLLLESWKEFEQTFGNQETLNQVL---KKIP 641
Query: 329 YEDEVRKNPMNYDI--WFDYIRLEE 351
R++ N I +FDYI EE
Sbjct: 642 QRVIKRRSDGNGGIEEYFDYIFPEE 666
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 210/382 (54%), Positives = 278/382 (72%)
Query: 26 PTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKQKITDSTELADYRLRKRKEFEDLIR 85
P RVKNK PAP+QI+ P Q+ D EL +Y+ RKRKEFED +R
Sbjct: 7 PPRVKNKAPAPVQISAEQLLREAVDRQEPSLQAPTQRFADLEELHEYQGRKRKEFEDYVR 66
Query: 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR 145
R R N W++YA WE QK+F RARS++ERAL+VD + LW++Y E EM+N+ INHAR
Sbjct: 67 RNRINMNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRYIESEMRNRNINHAR 126
Query: 146 NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRY 205
N+ DRAVT+LPRVD+LWYKY++MEE LGN+ G RQ+FERWM W PD+ W +YIK E RY
Sbjct: 127 NLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIKLEKRY 186
Query: 206 NEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
NE ERAR I++RF HP+ WIK+A+FE + G D R VY AVE L +D E+LF
Sbjct: 187 NEFERARAIFQRFTIVHPEPRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLF 246
Query: 266 VAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325
+A+A FE + KE ERAR IYK+ALD +P+ ++ L++ + FEKQ+GDREG+E+ I+ KR
Sbjct: 247 IAYARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKR 306
Query: 326 RFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
R QYE+++++N NYD+WFD+ RLEE G+ ER R+VYERAIA +PP++EKR+W+RYIYL
Sbjct: 307 RVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYL 366
Query: 386 WINYALYEELDAGDMERTRDVY 407
WI YAL+EE++A D++R R VY
Sbjct: 367 WIFYALWEEMEAKDIDRARQVY 388
Score = 265 (98.3 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 92/341 (26%), Positives = 156/341 (45%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
WIK+A++EE + R V+ A+E D+ + L++ YA E K K AR ++
Sbjct: 209 WIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKY 268
Query: 151 AVTLLPRVDQLW-YK-YIHMEEMLGNVAGARQIF--ERWMHW-------MPDQQGWLSYI 199
A+ LPR + +K Y E+ G+ G + +R + + + + W +
Sbjct: 269 ALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDFA 328
Query: 200 KFELRYNEVERARQIYERFV-QCHPK---------VSTWIKYAKFE-MKMGEVDRARNVY 248
+ E + + ER R +YER + Q P + WI YA +E M+ ++DRAR VY
Sbjct: 329 RLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDIDRARQVY 388
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
++ + + ++++ A+FE R + AR A+ PK + L+R ++
Sbjct: 389 TECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDK---LFRGYIDL 445
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E+Q + V + R YE ++ NP N W Y LE + + ERAR +YE I
Sbjct: 446 ERQLFE-------FV-RCRTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYELGI 497
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ W+ YI +E+ D G+ ER R +Y+
Sbjct: 498 DQPTLDMPELVWKAYID-------FED-DEGEYERERQLYE 530
Score = 249 (92.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 75/301 (24%), Positives = 144/301 (47%)
Query: 109 RARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKYI 166
+ R +E L+ + RN+ +W +A +E ++ R+V++RA+ +P + W +YI
Sbjct: 305 KRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYI 364
Query: 167 HM-------EEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVERARQ 213
++ EEM ++ ARQ++ + +P ++ WL +FE+R ++ AR+
Sbjct: 365 YLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARK 424
Query: 214 IYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEE 273
+ + PK + Y E ++ E R R +YE+ +E + Q ++ +AE E
Sbjct: 425 TLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEW---NPSNSQSWIQYAELER 481
Query: 274 RCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV 333
+TERAR IY+ +D E +++ ++ FE G+ E + R YE +
Sbjct: 482 GLDDTERARAIYELGIDQPTLDMPELVWKAYIDFEDDEGEYE--------RERQLYERLL 533
Query: 334 RKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYE 393
+K + +W +Y R E +V ++E E ER I++ + ++R ++ L E
Sbjct: 534 QKTD-HVKVWINYARFEINVPDEEEEEEEEERPISDEAKRRARAVFERAHRVFKEKELKE 592
Query: 394 E 394
E
Sbjct: 593 E 593
Score = 210 (79.0 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 81/342 (23%), Positives = 156/342 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINH--ARNVW-- 148
++I YA++E K++ RAR++++ AL+ R+ ++ L A + +F + NV
Sbjct: 245 LFIAYARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILA 304
Query: 149 DRAVTLLPRVDQ------LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG---WLSYI 199
R V ++ + +W+ + +EE G+ R ++ER + +P Q W YI
Sbjct: 305 KRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYI 364
Query: 200 KF--------ELRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDRARN 246
E+ +++RARQ+Y ++ H K + W+ A+FE++ + AR
Sbjct: 365 YLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARK 424
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
+A+ D+ LF + + E + E R R +Y+ ++ P + ++
Sbjct: 425 TLGQAIGMCPKDK----LFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNS-----QSWI- 474
Query: 307 FEKQYGDRE-GIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEESVGNKERAREVY 363
QY + E G++D + R YE + + ++ +W YI E+ G ER R++Y
Sbjct: 475 ---QYAELERGLDDT--ERARAIYELGIDQPTLDMPELVWKAYIDFEDDEGEYERERQLY 529
Query: 364 ERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRD 405
ER + ++ +WINYA +E ++ D E +
Sbjct: 530 ERLLQKTD----------HVKVWINYARFE-INVPDEEEEEE 560
Score = 198 (74.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 72/255 (28%), Positives = 121/255 (47%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN-KFINHARNVWDRA 151
VW+ A++E Q + AR +A+ + ++ L+ Y ++E + +F+ R ++++
Sbjct: 405 VWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDK-LFRGYIDLERQLFEFVR-CRTLYEKQ 462
Query: 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNE 207
+ P Q W +Y +E L + AR I+E + MP+ W +YI FE E
Sbjct: 463 IEWNPSNSQSWIQYAELERGLDDTERARAIYELGIDQPTLDMPELV-WKAYIDFEDDEGE 521
Query: 208 VERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFV- 266
ER RQ+YER +Q V WI YA+FE+ + + + ER + A A +F
Sbjct: 522 YERERQLYERLLQKTDHVKVWINYARFEINVPDEEEEEEEEERPISDEAK-RRARAVFER 580
Query: 267 AFAEFEERCKETERARCIYKF-ALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325
A F+E+ + ER + + A +H G ED+ + EKQ R V KR
Sbjct: 581 AHRVFKEKELKEERVELLNAWRAFEHT-HGSPEDIDK----IEKQMPRR-------VKKR 628
Query: 326 RFQYEDEVRKNPMNY 340
R + +D+ + M+Y
Sbjct: 629 R-KLDDDRYEEYMDY 642
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
Identities = 211/302 (69%), Positives = 247/302 (81%)
Query: 109 RARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168
R R +E + N +W+KYA+ EMKNK +N ARNVWDRAV+LLPRVDQLWYK+IHM
Sbjct: 75 RRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHM 134
Query: 169 EEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228
EE LGN+AGARQI ERW+H PDQQ WL +IKFEL+YNE+E AR IYERFV CHPKVS +
Sbjct: 135 EEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCHPKVSAY 194
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
I+YAKFEMK G+V+ A V+ERA ++LADDEEAE LFVAFAEFEE+ YKFA
Sbjct: 195 IRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQ----------YKFA 244
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
LD IPKGRAE+LY KFVAFEKQ GD+EGIEDAI+GKRR QYEDEVRKNP+NYD WFD++R
Sbjct: 245 LDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVR 304
Query: 349 LEESVGNKERAREVYERAIANVPP--AEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406
LEE+VGNK+R RE+YERA+ANVPP A+EKRYWQRYIYLWINYA + E+ D+E TRDV
Sbjct: 305 LEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDV 364
Query: 407 YQ 408
Y+
Sbjct: 365 YR 366
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 134/389 (34%), Positives = 198/389 (50%)
Query: 1 MMGSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPK 60
M KD+D +LGY+TRKD E+KLPR T+VKNKTPAPIQIT PP
Sbjct: 1 MASGKDSDRNLGYMTRKDAELKLPRMTQVKNKTPAPIQITAEQILREARERQEAEFRPPN 60
Query: 61 QKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV 120
Q ITDS EL+DYRLR+RKEFED IRR R NT VW+KYA +E K N AR+VW+RA+ +
Sbjct: 61 QTITDSAELSDYRLRRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSL 120
Query: 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ 180
R LW K+ +E K I AR + +R + P Q W +I E + AR
Sbjct: 121 LPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPD-QQAWLCFIKFELKYNEIECARS 179
Query: 181 IFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYER----FVQCHPKVSTWIKYAKFEM 236
I+ER++ P ++ Y KFE+++ +VE A +++ER ++ +A+FE
Sbjct: 180 IYERFVLCHPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEE 239
Query: 237 KMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETE--------RARCIYKFA 288
+ Y+ A++++ AE L+ F FE++ + E + RC Y+
Sbjct: 240 Q----------YKFALDQIPKGR-AENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYE-- 286
Query: 289 LDHIPKGRAE-DLYRKFVAFEKQYGDREGI----EDAIVGKRRFQYEDEVRKNPMNYDIW 343
D + K D + FV E+ G+++ I E A+ + +++ Y +W
Sbjct: 287 -DEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIY-LW 344
Query: 344 FDYIRLEESVGNK-ERAREVYERAIANVP 371
+Y E V E R+VY + +P
Sbjct: 345 INYAFFAEMVTEDVESTRDVYRACLKLIP 373
Score = 280 (103.6 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 79/268 (29%), Positives = 133/268 (49%)
Query: 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL---------EVDY--R 123
++R ++ED +R+ N W + + EE+ + +R R ++ERA+ E Y R
Sbjct: 280 KRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQR 339
Query: 124 NHTLWLKYAE-VEMKNKFINHARNVWDRAVTLLPRVD----QLWYKYIHMEEMLGNVAGA 178
LW+ YA EM + + R+V+ + L+P ++W E N+ GA
Sbjct: 340 YIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGA 399
Query: 179 RQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMK 237
RQI + P + + YI+ EL+ ++R R++YER+++ P W KYA+FEM
Sbjct: 400 RQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMS 459
Query: 238 MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA 297
+ E +R R ++E A+ + A D E L+ + +FE E ER R +Y+ LD +
Sbjct: 460 LAETERTRAIFELAISQPALDMP-ELLWKTYIDFEISEGELERTRALYERLLDRTKHCKV 518
Query: 298 EDLYRKFVAFEKQYGDREGIEDAIVGKR 325
+ KF A ++ + E EDAI K+
Sbjct: 519 WVDFAKFEASAAEHKEDEEEEDAIERKK 546
Score = 208 (78.3 bits), Expect = 8.2e-14, P = 8.2e-14
Identities = 93/344 (27%), Positives = 152/344 (44%)
Query: 94 WIKYAKWEESQKDFNRARSVWERA---LEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
+I+YAK+E A V+ERA L D L++ +AE E + KF
Sbjct: 194 YIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQYKF---------- 243
Query: 151 AVTLLP--RVDQLWYKYIHMEEMLGN-------VAGARQI-FERWMHWMP-DQQGWLSYI 199
A+ +P R + L+ K++ E+ G+ + G R+ +E + P + W ++
Sbjct: 244 ALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFV 303
Query: 200 KFELRYNEVERARQIYERFVQCHPK------------VSTWIKYAKF-EMKMGEVDRARN 246
+ E +R R+IYER V P + WI YA F EM +V+ R+
Sbjct: 304 RLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRD 363
Query: 247 VYERAVEKLADDEEAE--QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKF 304
VY RA KL + ++++ A+ E R AR I A+ PK + +++K+
Sbjct: 364 VY-RACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAPKDK---IFKKY 419
Query: 305 VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYE 364
+ E Q + + + R YE + +P N W Y E S+ ER R ++E
Sbjct: 420 IEIELQLRN--------IDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFE 471
Query: 365 RAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
AI+ PA + LW Y +E + G++ERTR +Y+
Sbjct: 472 LAISQ--PALDMPE-----LLWKTYIDFE-ISEGELERTRALYE 507
Score = 189 (71.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 73/289 (25%), Positives = 124/289 (42%)
Query: 109 RARSVWERALEVDYRNHTLWLKYAEVE--MKNKFINHARNVWDRAVTLLP---------- 156
+ R +E + + N+ W + +E + NK + R +++RAV +P
Sbjct: 280 KRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNK--DRIREIYERAVANVPPPEAQEKRYW 337
Query: 157 -RVDQLWYKYIHMEEMLG-NVAGARQIFERWMHWMPDQQG-----WLSYIKFELRYNEVE 209
R LW Y EM+ +V R ++ + +P + WL + E+R +
Sbjct: 338 QRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLT 397
Query: 210 RARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
ARQI + PK + KY + E+++ +DR R +YER +E + A + +A
Sbjct: 398 GARQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWR---KYA 454
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
EFE ETER R I++ A+ E L++ ++ FE G+ E + R Y
Sbjct: 455 EFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELE--------RTRALY 506
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVG-NKERARE--VYERAIANVPPAEE 375
E + + +W D+ + E S +KE E ER + A E
Sbjct: 507 E-RLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRARE 554
Score = 184 (69.8 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 70/271 (25%), Positives = 117/271 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ E Q + AR + A+ ++ ++ KY E+E++ + I+ R +++R +
Sbjct: 382 IWLLAAQHEIRQLNLTGARQILGNAIGKAPKDK-IFKKYIEIELQLRNIDRCRKLYERYL 440
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPDQQGWLSYIKFELRYNEV 208
P W KY E L R IFE + MP+ W +YI FE+ E+
Sbjct: 441 EWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELL-WKTYIDFEISEGEL 499
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADD-EEAEQLFVA 267
ER R +YER + W+ +AKFE E + E A+E+ D + A ++F
Sbjct: 500 ERTRALYERLLDRTKHCKVWVDFAKFEASAAE-HKEDEEEEDAIERKKDGIKRAREIF-- 556
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRA---EDLYRKFVAFEKQYGDREGIEDAI--- 321
+RA K + + + RA ED F K GD ++ +
Sbjct: 557 -----------DRANTYNKDSTPELKEERAMLLEDWLNMETGFGK-LGDVRVVQSKLPKK 604
Query: 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEES 352
V KR+ ++ Y+ + DY+ EES
Sbjct: 605 VKKRKLSSRED---GCTEYEEYTDYLFPEES 632
Score = 165 (63.1 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 74/323 (22%), Positives = 141/323 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKY-AEVE-MKNKFINHARNVWDR 150
+++ +A++EE K F + RA + Y + K + E +++ I R ++
Sbjct: 230 LFVAFAEFEEQYK-FALDQIPKGRAENL-YSKFVAFEKQNGDKEGIEDAIIGKRRCQYED 287
Query: 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG------------WLSY 198
V P W+ ++ +EE +GN R+I+ER + +P + W++Y
Sbjct: 288 EVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINY 347
Query: 199 IKF-ELRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDRARNVYERAV 252
F E+ +VE R +Y ++ H K S W+ A+ E++ + AR + A+
Sbjct: 348 AFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAI 407
Query: 253 EKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312
K D+ +F + E E + + +R R +Y+ L+ P G +RK+ FE
Sbjct: 408 GKAPKDK----IFKKYIEIELQLRNIDRCRKLYERYLEWSP-GNCY-AWRKYAEFEMSLA 461
Query: 313 DREGIEDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLEESVGNKERAREVYERAIANV 370
+ E + R +E + + ++ +W YI E S G ER R +YER +
Sbjct: 462 ETE--------RTRAIFELAISQPALDMPELLWKTYIDFEISEGELERTRALYERLLDRT 513
Query: 371 PPAEEKRYWQRYIYLWINYALYE 393
++ +W+++A +E
Sbjct: 514 ----------KHCKVWVDFAKFE 526
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
Identities = 202/381 (53%), Positives = 269/381 (70%)
Query: 28 RVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKQKITDSTELADYRLRKRKEFEDLIRRV 87
RVKNK PAPIQI+ PPK ITD EL +++ RKRKEFED IRR
Sbjct: 7 RVKNKNPAPIQISAEQLLREAVERQDVAFVPPKINITDLEELQEFQGRKRKEFEDAIRRN 66
Query: 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNV 147
R G W++Y +WE QK+F RARSV+ERAL+VD LWLKY E EMKN+ INHARN+
Sbjct: 67 RLAMGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNL 126
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNE 207
+DRAVT LPRVD+LWYKY++MEEMLGN+ G RQ+FERW+ W PD+ W+SYI+ E RY+E
Sbjct: 127 FDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIRMERRYHE 186
Query: 208 VERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
ERAR IYERFV HP+V+ W+++A+FE + G R VY A++ L + E+ F+A
Sbjct: 187 NERARGIYERFVVVHPEVTNWLRWARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIA 246
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327
FA+FE R KE ERAR I+K+A+D +P+ ++ +LY+++ FEKQ+GD G+E ++ KRR
Sbjct: 247 FAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRL 306
Query: 328 QYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWI 387
QYE ++ +P +YD W D ++LEES G+ RE YE+AIA VP EK W+RY+Y+W+
Sbjct: 307 QYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWL 366
Query: 388 NYALYEELDAGDMERTRDVYQ 408
NY L+EE+D D++R R VYQ
Sbjct: 367 NYCLFEEIDVKDVDRARKVYQ 387
Score = 269 (99.8 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 89/342 (26%), Positives = 165/342 (48%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
W+++A++EE + R V+ A++ ++ N ++ +A+ E++ K AR ++
Sbjct: 207 WLRWARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKY 266
Query: 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGA-------RQI-FERWMHWMP-DQQGWLSYI 199
A+ +PR +L+ +Y H E+ G+ G R++ +E+ + P D WL +
Sbjct: 267 AIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSPYDYDTWLDLL 326
Query: 200 KFELRYNEVERARQIYERFVQCHPKVST----------WIKYAKFE-MKMGEVDRARNVY 248
K E ++ R+ YE+ + P+V W+ Y FE + + +VDRAR VY
Sbjct: 327 KLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEIDVKDVDRARKVY 386
Query: 249 ERAVEKLADDEEA-EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
+ A++ + + +L++ +A FE R ++ + AR AL PK + L+R ++ F
Sbjct: 387 QEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKTLGRALGMCPKPK---LFRGYIEF 443
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E + I+ + R YE + +P W Y LE +G+ +RAR +Y A+
Sbjct: 444 E------DAIKQ--FDRCRILYEKWILYDPEACAPWLGYAALETKLGDSDRARALYNLAV 495
Query: 368 ANVPPAEEKRY-WQRYIYLWINYALYEELDAGDMERTRDVYQ 408
N P E W+ YI ++ +EE++ G + R +YQ
Sbjct: 496 -NQPILETPELVWKAYI----DFE-FEEMEYG---KARSIYQ 528
Score = 212 (79.7 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 79/340 (23%), Positives = 158/340 (46%)
Query: 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHT--LWLKYAEVE--------MKNK 139
N +I +AK+E QK++ RAR++++ A++ R+ + L+ +Y E +++
Sbjct: 240 NERFFIAFAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVEST 299
Query: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQG--- 194
++ R +++ + P W + +EE G++ R+ +E+ + +P+ ++
Sbjct: 300 VLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWR 359
Query: 195 -----WLSYIKFE-LRYNEVERARQIYERFVQC--HPKVS---TWIKYAKFEMKMGEVDR 243
WL+Y FE + +V+RAR++Y+ ++ H K + W+ YA FE++ ++D
Sbjct: 360 RYVYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDV 419
Query: 244 ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRK 303
AR RA+ + LF + EFE+ K+ +R R +Y+ + + P+ A L
Sbjct: 420 ARKTLGRALGMCPKPK----LFRGYIEFEDAIKQFDRCRILYEKWILYDPEACAPWL--G 473
Query: 304 FVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVY 363
+ A E + GD D + + P +W YI E +AR +Y
Sbjct: 474 YAALETKLGD----SDRARALYNLAVNQPILETPEL--VWKAYIDFEFEEMEYGKARSIY 527
Query: 364 ERAIANVPPAEEKRYWQRYIYLWINYALYE--ELDAGDME 401
++ + P ++ +WI++A +E L+ D E
Sbjct: 528 QQLLRTAP----------HVKVWISFANFEIAHLEDDDEE 557
Score = 210 (79.0 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 83/318 (26%), Positives = 145/318 (45%)
Query: 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV 134
++R ++E L++ ++ W+ K EES D N R +E+A+ K EV
Sbjct: 303 KRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIA----------KVPEV 352
Query: 135 EMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM-LGNVAGARQIFERWMHWMPDQQ 193
KN W R V +W Y EE+ + +V AR++++ + +P ++
Sbjct: 353 VEKN--------AWRRYV-------YIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKK 397
Query: 194 G-----WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVY 248
WL Y FELR +++ AR+ R + PK + Y +FE + + DR R +Y
Sbjct: 398 FTFAKLWLMYAMFELRQRKIDVARKTLGRALGMCPKPKLFRGYIEFEDAIKQFDRCRILY 457
Query: 249 ERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFE 308
E+ + L D E ++ +A E + +++RAR +Y A++ E +++ ++ FE
Sbjct: 458 EKWI--LYDPEACAP-WLGYAALETKLGDSDRARALYNLAVNQPILETPELVWKAYIDFE 514
Query: 309 KQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW-----FDYIRLE---ESVGNKE--- 357
E+ GK R Y+ +R P + +W F+ LE E N+E
Sbjct: 515 --------FEEMEYGKARSIYQQLLRTAP-HVKVWISFANFEIAHLEDDDEEPPNEEVAS 565
Query: 358 -----RAREVYERAIANV 370
RAR V+E A+A++
Sbjct: 566 PTAVVRARNVFENALAHL 583
Score = 176 (67.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 67/268 (25%), Positives = 125/268 (46%)
Query: 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM 186
LWL YA E++ + I+ AR RA+ + P+ +L+ YI E+ + R ++E+W+
Sbjct: 403 LWLMYAMFELRQRKIDVARKTLGRALGMCPK-PKLFRGYIEFEDAIKQFDRCRILYEKWI 461
Query: 187 HWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVST----WIKYAKFEMKMGEV 241
+ P+ WL Y E + + +RAR +Y V P + T W Y FE + E
Sbjct: 462 LYDPEACAPWLGYAALETKLGDSDRARALYNLAVN-QPILETPELVWKAYIDFEFEEMEY 520
Query: 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFE--------ERCKETE--------RARCIY 285
+AR++Y++ + +++++FA FE E E RAR ++
Sbjct: 521 GKARSIYQQLLRTAPH----VKVWISFANFEIAHLEDDDEEPPNEEVASPTAVVRARNVF 576
Query: 286 KFALDHI-PKGRAED---LYRKFVAFEKQYGD---REGIEDAI--VGKRRFQYEDEVRKN 336
+ AL H+ +G E+ L + FE +G R+ + + V K+R + ED
Sbjct: 577 ENALAHLRQQGLKEERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRRRLEDG---- 632
Query: 337 PMNYDIWFDYIRLEESVGNKERAREVYE 364
+++ + DY+ + + ++ R++ E
Sbjct: 633 --SFEEYLDYLFPDTATDQGDKMRKMLE 658
Score = 158 (60.7 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 57/223 (25%), Positives = 98/223 (43%)
Query: 75 RKRKEFEDLIRRVRWN----TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLK 130
R RK +++ ++ + +W+ YA +E Q+ + AR RAL + + L+
Sbjct: 381 RARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKTLGRALGMCPKPK-LFRG 439
Query: 131 YAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP 190
Y E E K + R ++++ + P W Y +E LG+ AR ++ ++ P
Sbjct: 440 YIEFEDAIKQFDRCRILYEKWILYDPEACAPWLGYAALETKLGDSDRARALYNLAVN-QP 498
Query: 191 ----DQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVD---- 242
+ W +YI FE E +AR IY++ ++ P V WI +A FE+ E D
Sbjct: 499 ILETPELVWKAYIDFEFEEMEYGKARSIYQQLLRTAPHVKVWISFANFEIAHLEDDDEEP 558
Query: 243 ------------RARNVYERAVEKLADDEEAEQLFVAFAEFEE 273
RARNV+E A+ L E+ V +++
Sbjct: 559 PNEEVASPTAVVRARNVFENALAHLRQQGLKEERVVLLEAWKQ 601
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 210/395 (53%), Positives = 277/395 (70%)
Query: 21 VKLPRPT-RVKNKTPAPIQITXXXXXXXXXXXXXXXXXP-PKQKITDSTELADYRLRKRK 78
++LP+ +VKNK PA +QIT P PK KITD EL +Y+ +KRK
Sbjct: 14 IRLPKKAAKVKNKAPAQLQITAEQLLREAKERELELIPPAPKTKITDPDELKEYQRKKRK 73
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN 138
EFED IR+ R WIKY KWEES + RARSV+ERAL+VD+R+ ++WL+YAE+EM+
Sbjct: 74 EFEDGIRKNRMQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAEMEMRC 133
Query: 139 KFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSY 198
K INHARNV+DRA+T++PR Q W KY +MEE++ N+ GARQIFERW+ W P +Q W +Y
Sbjct: 134 KQINHARNVFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTY 193
Query: 199 IKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257
I FELRY E++RAR +Y+RF+ H V WIKYAKFE + G + AR YE+A+E +
Sbjct: 194 INFELRYKEIDRARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYFGE 253
Query: 258 DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGI 317
++ E + VAFA FEER KE ERAR I+K+ LD++P R E++++ + EK++G+R GI
Sbjct: 254 EDINETVLVAFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGERVGI 313
Query: 318 EDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRL-EESVGNKERAREVYERAIANVPPA--- 373
ED I+ KR+ QYE V +N NYD WFDY+RL E ++E +VYERAIAN+PP
Sbjct: 314 EDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPPHSYF 373
Query: 374 EEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+EKRYW+RYIYLWINYALYEEL A D +R R VY+
Sbjct: 374 QEKRYWRRYIYLWINYALYEELVAKDFDRARQVYK 408
Score = 249 (92.7 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 81/308 (26%), Positives = 152/308 (49%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEES-QKDFNRARSVWERAL 118
++++ D E A + F++ R R +WI YA +EE KDF+RAR V++ +
Sbjct: 353 REEVEDVYERAIANIPPHSYFQEK-RYWRRYIYLWINYALYEELVAKDFDRARQVYKACI 411
Query: 119 EV-DYRNHT---LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN 174
++ ++ T +W+ +A E++ +N AR + A+ P+ D+L+ YI +E L
Sbjct: 412 DIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPK-DKLFRAYIDLELQLRE 470
Query: 175 VAGARQIFERWMHWMPDQ-QGWLSYIKFELRYNEVERARQIYERFVQCHPKVST----WI 229
R+++E+++ P+ Q W+ + + E + +R+R ++ VQ P + W
Sbjct: 471 FDRCRKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQ-QPALDMPELLWK 529
Query: 230 KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL 289
Y FE+ E ++AR++YE +++ +++++ AEFE+ E AR ++ A
Sbjct: 530 AYIDFEIACEEHEKARDLYETLLQRT----NHIKVWISMAEFEQTIGNFEGARKAFERAN 585
Query: 290 DHIPKGRAED---LYRKFVAFEKQYGDREG---IEDAI---VGKRR-FQYEDEVRKNPMN 339
+ E+ L + E + GD+E +E + V KRR Q ED V
Sbjct: 586 QSLENAEKEERLMLLEAWKECETKSGDQEALKRVETMMPRRVKKRRQIQTEDGV---DAG 642
Query: 340 YDIWFDYI 347
++ +FDYI
Sbjct: 643 WEEYFDYI 650
Score = 245 (91.3 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 69/242 (28%), Positives = 121/242 (50%)
Query: 127 LWLKYAEVE-MKNKFINHARNVWDRAVTLLPRVD----QLWYKYIHMEEMLGNVAGARQI 181
LW+ YA E + K + AR V+ + ++P ++W + H E ++ AR+I
Sbjct: 385 LWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKI 444
Query: 182 FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKMGE 240
+ P + + +YI EL+ E +R R++YE+F++ P+ S TWIK+A+ E +G+
Sbjct: 445 MGVAIGKCPKDKLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKFAELETLLGD 504
Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDL 300
DR+R V+ AV++ A D E L+ A+ +FE C+E E+AR +Y+ L + +
Sbjct: 505 TDRSRAVFTIAVQQPALDMP-ELLWKAYIDFEIACEEHEKARDLYETLLQRTNHIK---V 560
Query: 301 YRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAR 360
+ FE+ G+ EG A + E + M + W + E G++E +
Sbjct: 561 WISMAEFEQTIGNFEGARKAFERANQSLENAEKEERLMLLEAWKE---CETKSGDQEALK 617
Query: 361 EV 362
V
Sbjct: 618 RV 619
Score = 178 (67.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 74/312 (23%), Positives = 131/312 (41%)
Query: 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP--RVDQLWYKYIHMEEMLGNVAGARQI 181
N T+ + +A E + K AR ++ + LP R ++++ Y E+ G G +
Sbjct: 257 NETVLVAFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGERVGIEDV 316
Query: 182 F--ERWMHW--MPDQQG-----WLSYIKF-ELRYNEVERARQIYERFVQCHPKVS----- 226
+R + M ++ G W Y++ E + E +YER + P S
Sbjct: 317 IISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPPHSYFQEK 376
Query: 227 --------TWIKYAKFEMKMG-EVDRARNVYERAVEKLADDEEA-EQLFVAFAEFEERCK 276
WI YA +E + + DRAR VY+ ++ + ++++ FA FE R
Sbjct: 377 RYWRRYIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQL 436
Query: 277 ETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN 336
+ AR I A+ PK + L+R ++ E Q RE + R YE + +
Sbjct: 437 DLNAARKIMGVAIGKCPKDK---LFRAYIDLELQL--RE------FDRCRKLYEKFLESS 485
Query: 337 PMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELD 396
P + W + LE +G+ +R+R V+ A+ + W+ YI E+
Sbjct: 486 PESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELLWKAYIDF--------EIA 537
Query: 397 AGDMERTRDVYQ 408
+ E+ RD+Y+
Sbjct: 538 CEEHEKARDLYE 549
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 38/134 (28%), Positives = 68/134 (50%)
Query: 59 PKQKITDSTELADYRLRK----RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVW 114
PK K+ + + +LR+ RK +E + ++ WIK+A+ E D +R+R+V+
Sbjct: 453 PKDKLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVF 512
Query: 115 ERALEVDYRN--HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL--WYKYIHMEE 170
A++ + LW Y + E+ + AR++++ TLL R + + W E+
Sbjct: 513 TIAVQQPALDMPELLWKAYIDFEIACEEHEKARDLYE---TLLQRTNHIKVWISMAEFEQ 569
Query: 171 MLGNVAGARQIFER 184
+GN GAR+ FER
Sbjct: 570 TIGNFEGARKAFER 583
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 172/387 (44%), Positives = 243/387 (62%)
Query: 28 RVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKQKITDSTELADYRLRKRKEFEDLIRRV 87
+VKNK A +QIT + D EL +YR+ KRKE+ED IR+
Sbjct: 9 QVKNKNAAEVQITAEQLINEALELEEVEHKV-NYNLIDEEELNEYRINKRKEYEDKIRKR 67
Query: 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNV 147
R+ +IKY WE QKD R RS++ERAL +DY N LWLKY EVE+ NK IN ARN+
Sbjct: 68 RYMISTYIKYGLWEIKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNL 127
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNE 207
+R V LLP + W KY H+EE+L N AR I+ERW+ + D+ +L YI FE R NE
Sbjct: 128 LERVVLLLPLENIFWKKYAHLEEILNNYVNARNIYERWIKFKIDESSFLCYIYFEERCNE 187
Query: 208 VERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
+ + R+I+ER + PK+ + K+ KFE K + RAR YE+ +E L E ++
Sbjct: 188 INKCREIFERLIVSIPKLECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIH 247
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327
F FEE E ER + IY AL +PK ++E LY+ F+ F+K+Y +++ + ++++ K R
Sbjct: 248 FCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESLLIKERI 307
Query: 328 QYEDEVRKNPMNYDIWFDYIRLEES-VGN--KE----RAREVYERAIANVPPAEEKRYWQ 380
YEDE++KN +YDIWF+YI+LEES + N KE R R++YERAI+ +P K++W+
Sbjct: 308 FYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWK 367
Query: 381 RYIYLWINYALYEELDAGDMERTRDVY 407
RYIYLWINY+++EEL A +++R RDVY
Sbjct: 368 RYIYLWINYSIFEELYAQNIQRARDVY 394
Score = 258 (95.9 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 76/292 (26%), Positives = 150/292 (51%)
Query: 93 VWIKYAKWEESQ-KDFNRARSVWERALEV----DYRNHTLWLKYAEVEMKNKFINHARNV 147
+WI Y+ +EE ++ RAR V+ +++ ++ +++ YA E++ +N AR++
Sbjct: 372 LWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSI 431
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKFELRYN 206
++ A+ +P ++++ K+ E LGN+ R ++ +++ P + + W+S I FEL +
Sbjct: 432 FNNALQTIPN-EKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSLD 490
Query: 207 EVERARQIYERFVQCH----PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
EVERARQI E + P++ W Y E+ + E D AR +Y+R L + +
Sbjct: 491 EVERARQIAEIAINLDDMKLPEL-IWKNYIDMEINLQEYDNARKLYDR----LLNITQHY 545
Query: 263 QLFVAFAEFEE-RCKETERARCIYKFALDHIPKGRAED---LYRKFVA-FEKQYGDREGI 317
+++ ++AEF + E R I + ++ K + + F+ EK YGD+E I
Sbjct: 546 KVYKSYAEFTYIYLDDIEMCRKILEEGIEFCKKNELINERCILLNFLCDIEKDYGDKEII 605
Query: 318 EDAIVGKRRFQYEDEVRKNPMNYD-IWFDYIR-LEESVGNKERAREVYERAI 367
+ + + + ++ KN N D I +YI + GN+ + ++ E+A+
Sbjct: 606 DKTLKRLPKKVKKRKIIKNNDNDDEIIEEYITYVFPDDGNQSQNMKILEKAL 657
Score = 244 (91.0 bits), Expect = 8.3e-18, P = 8.3e-18
Identities = 82/304 (26%), Positives = 138/304 (45%)
Query: 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169
A + ALE++ H + + E N++ + R ++ + + + KY E
Sbjct: 22 AEQLINEALELEEVEHKVNYNLIDEEELNEYRINKRKEYEDKIRKRRYMISTYIKYGLWE 81
Query: 170 EMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVST- 227
++ R IFER ++ ++ WL YI+ EL + AR + ER V P +
Sbjct: 82 IKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIF 141
Query: 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKF 287
W KYA E + ARN+YER + K DE + F+ + FEERC E + R I++
Sbjct: 142 WKKYAHLEEILNNYVNARNIYERWI-KFKIDESS---FLCYIYFEERCNEINKCREIFER 197
Query: 288 ALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNY---DIWF 344
+ IPK E Y KF+ FEK+Y + IV + R YE + P Y + +
Sbjct: 198 LIVSIPK--LECFY-KFIKFEKKYKN-------IV-RARAAYEKCIELLPSCYIDENFYI 246
Query: 345 DYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTR 404
+ EE ER +++Y A+ +P + + ++ ++ YA +EL + + R
Sbjct: 247 HFCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESLLIKER 306
Query: 405 DVYQ 408
Y+
Sbjct: 307 IFYE 310
Score = 186 (70.5 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 72/283 (25%), Positives = 132/283 (46%)
Query: 137 KNKFINHARNVWDRAVTLLPRVD--QLWYKYIHM-------EEMLG-NVAGARQIFERWM 186
K K I R++++RA++++P + + W +YI++ EE+ N+ AR ++ +
Sbjct: 339 KEKCIIRIRDLYERAISIIPIISSKKFWKRYIYLWINYSIFEELYAQNIQRARDVYNNII 398
Query: 187 HWMPDQQG-----WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEV 241
+ + ++ Y FELR V +AR I+ +Q P + K+ +FE+K+G +
Sbjct: 399 KILSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQTIPNEKIFEKFCEFELKLGNI 458
Query: 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLY 301
RNVY + VE + +A +++ FE E ERAR I + A++ E ++
Sbjct: 459 RECRNVYAKYVEAFPFNSKA---WISMINFELSLDEVERARQIAEIAINLDDMKLPELIW 515
Query: 302 RKFVAFE---KQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKER 358
+ ++ E ++Y + + D ++ + Y+ V K+ F YI L++ E
Sbjct: 516 KNYIDMEINLQEYDNARKLYDRLLNITQ-HYK--VYKSYAE----FTYIYLDDI----EM 564
Query: 359 AREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDME 401
R++ E I E +R I L N+ E D GD E
Sbjct: 565 CRKILEEGIEFCKKNELIN--ERCILL--NFLCDIEKDYGDKE 603
Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
Identities = 35/157 (22%), Positives = 74/157 (47%)
Query: 68 ELADYRLRK-RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHT 126
EL + K R F + ++ + N ++ K+ ++E + R+V+ + +E N
Sbjct: 419 ELRQLNVNKARSIFNNALQTIP-NEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSK 477
Query: 127 LWLKYAEVEMKNKFINHARNVWDRAVTL--LPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
W+ E+ + AR + + A+ L + + +W YI ME L AR++++R
Sbjct: 478 AWISMINFELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDR 537
Query: 185 WMHWMPDQQGWLSYIKFELRY-NEVERARQIYERFVQ 220
++ + + SY +F Y +++E R+I E ++
Sbjct: 538 LLNITQHYKVYKSYAEFTYIYLDDIEMCRKILEEGIE 574
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 172/387 (44%), Positives = 243/387 (62%)
Query: 28 RVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKQKITDSTELADYRLRKRKEFEDLIRRV 87
+VKNK A +QIT + D EL +YR+ KRKE+ED IR+
Sbjct: 9 QVKNKNAAEVQITAEQLINEALELEEVEHKV-NYNLIDEEELNEYRINKRKEYEDKIRKR 67
Query: 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNV 147
R+ +IKY WE QKD R RS++ERAL +DY N LWLKY EVE+ NK IN ARN+
Sbjct: 68 RYMISTYIKYGLWEIKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNL 127
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNE 207
+R V LLP + W KY H+EE+L N AR I+ERW+ + D+ +L YI FE R NE
Sbjct: 128 LERVVLLLPLENIFWKKYAHLEEILNNYVNARNIYERWIKFKIDESSFLCYIYFEERCNE 187
Query: 208 VERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
+ + R+I+ER + PK+ + K+ KFE K + RAR YE+ +E L E ++
Sbjct: 188 INKCREIFERLIVSIPKLECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIH 247
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327
F FEE E ER + IY AL +PK ++E LY+ F+ F+K+Y +++ + ++++ K R
Sbjct: 248 FCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESLLIKERI 307
Query: 328 QYEDEVRKNPMNYDIWFDYIRLEES-VGN--KE----RAREVYERAIANVPPAEEKRYWQ 380
YEDE++KN +YDIWF+YI+LEES + N KE R R++YERAI+ +P K++W+
Sbjct: 308 FYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWK 367
Query: 381 RYIYLWINYALYEELDAGDMERTRDVY 407
RYIYLWINY+++EEL A +++R RDVY
Sbjct: 368 RYIYLWINYSIFEELYAQNIQRARDVY 394
Score = 258 (95.9 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 76/292 (26%), Positives = 150/292 (51%)
Query: 93 VWIKYAKWEESQ-KDFNRARSVWERALEV----DYRNHTLWLKYAEVEMKNKFINHARNV 147
+WI Y+ +EE ++ RAR V+ +++ ++ +++ YA E++ +N AR++
Sbjct: 372 LWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSI 431
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKFELRYN 206
++ A+ +P ++++ K+ E LGN+ R ++ +++ P + + W+S I FEL +
Sbjct: 432 FNNALQTIPN-EKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSLD 490
Query: 207 EVERARQIYERFVQCH----PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
EVERARQI E + P++ W Y E+ + E D AR +Y+R L + +
Sbjct: 491 EVERARQIAEIAINLDDMKLPEL-IWKNYIDMEINLQEYDNARKLYDR----LLNITQHY 545
Query: 263 QLFVAFAEFEE-RCKETERARCIYKFALDHIPKGRAED---LYRKFVA-FEKQYGDREGI 317
+++ ++AEF + E R I + ++ K + + F+ EK YGD+E I
Sbjct: 546 KVYKSYAEFTYIYLDDIEMCRKILEEGIEFCKKNELINERCILLNFLCDIEKDYGDKEII 605
Query: 318 EDAIVGKRRFQYEDEVRKNPMNYD-IWFDYIR-LEESVGNKERAREVYERAI 367
+ + + + ++ KN N D I +YI + GN+ + ++ E+A+
Sbjct: 606 DKTLKRLPKKVKKRKIIKNNDNDDEIIEEYITYVFPDDGNQSQNMKILEKAL 657
Score = 244 (91.0 bits), Expect = 8.3e-18, P = 8.3e-18
Identities = 82/304 (26%), Positives = 138/304 (45%)
Query: 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169
A + ALE++ H + + E N++ + R ++ + + + KY E
Sbjct: 22 AEQLINEALELEEVEHKVNYNLIDEEELNEYRINKRKEYEDKIRKRRYMISTYIKYGLWE 81
Query: 170 EMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVST- 227
++ R IFER ++ ++ WL YI+ EL + AR + ER V P +
Sbjct: 82 IKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIF 141
Query: 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKF 287
W KYA E + ARN+YER + K DE + F+ + FEERC E + R I++
Sbjct: 142 WKKYAHLEEILNNYVNARNIYERWI-KFKIDESS---FLCYIYFEERCNEINKCREIFER 197
Query: 288 ALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNY---DIWF 344
+ IPK E Y KF+ FEK+Y + IV + R YE + P Y + +
Sbjct: 198 LIVSIPK--LECFY-KFIKFEKKYKN-------IV-RARAAYEKCIELLPSCYIDENFYI 246
Query: 345 DYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTR 404
+ EE ER +++Y A+ +P + + ++ ++ YA +EL + + R
Sbjct: 247 HFCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESLLIKER 306
Query: 405 DVYQ 408
Y+
Sbjct: 307 IFYE 310
Score = 186 (70.5 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 72/283 (25%), Positives = 132/283 (46%)
Query: 137 KNKFINHARNVWDRAVTLLPRVD--QLWYKYIHM-------EEMLG-NVAGARQIFERWM 186
K K I R++++RA++++P + + W +YI++ EE+ N+ AR ++ +
Sbjct: 339 KEKCIIRIRDLYERAISIIPIISSKKFWKRYIYLWINYSIFEELYAQNIQRARDVYNNII 398
Query: 187 HWMPDQQG-----WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEV 241
+ + ++ Y FELR V +AR I+ +Q P + K+ +FE+K+G +
Sbjct: 399 KILSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQTIPNEKIFEKFCEFELKLGNI 458
Query: 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLY 301
RNVY + VE + +A +++ FE E ERAR I + A++ E ++
Sbjct: 459 RECRNVYAKYVEAFPFNSKA---WISMINFELSLDEVERARQIAEIAINLDDMKLPELIW 515
Query: 302 RKFVAFE---KQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKER 358
+ ++ E ++Y + + D ++ + Y+ V K+ F YI L++ E
Sbjct: 516 KNYIDMEINLQEYDNARKLYDRLLNITQ-HYK--VYKSYAE----FTYIYLDDI----EM 564
Query: 359 AREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDME 401
R++ E I E +R I L N+ E D GD E
Sbjct: 565 CRKILEEGIEFCKKNELIN--ERCILL--NFLCDIEKDYGDKE 603
Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
Identities = 35/157 (22%), Positives = 74/157 (47%)
Query: 68 ELADYRLRK-RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHT 126
EL + K R F + ++ + N ++ K+ ++E + R+V+ + +E N
Sbjct: 419 ELRQLNVNKARSIFNNALQTIP-NEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSK 477
Query: 127 LWLKYAEVEMKNKFINHARNVWDRAVTL--LPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
W+ E+ + AR + + A+ L + + +W YI ME L AR++++R
Sbjct: 478 AWISMINFELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDR 537
Query: 185 WMHWMPDQQGWLSYIKFELRY-NEVERARQIYERFVQ 220
++ + + SY +F Y +++E R+I E ++
Sbjct: 538 LLNITQHYKVYKSYAEFTYIYLDDIEMCRKILEEGIE 574
>CGD|CAL0004743 [details] [associations]
symbol:orf19.332 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0071008 "U2-type
post-mRNA release spliceosomal complex" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720027.1 RefSeq:XP_720159.1
ProteinModelPortal:Q5AED6 STRING:Q5AED6 GeneID:3638214
GeneID:3638364 KEGG:cal:CaO19.332 KEGG:cal:CaO19.7964
eggNOG:NOG327505 KO:K12869 Uniprot:Q5AED6
Length = 758
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 132/329 (40%), Positives = 196/329 (59%)
Query: 59 PKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWE-ESQKDFNRARSVWERA 117
P+Q I D+ EL Y+ KRKEFE I + R N G W +YAKWE E+ DF RARS+ ERA
Sbjct: 88 PRQTIQDTEELQSYQQTKRKEFEQHINKNRLNLGQWTRYAKWEIENNHDFPRARSILERA 147
Query: 118 LEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAG 177
L+V+ ++ W++Y ++E+ +K INHARN+ +RA+ LPRV++LW+ Y+ EEML N
Sbjct: 148 LDVNIQHVPFWIQYIQLELSHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKNYPM 207
Query: 178 ARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMK 237
R +FERW+ W PD W +YI FE RY E E R I++++V P TW K+ K+EM+
Sbjct: 208 VRAVFERWLDWHPDTSVWDAYINFEARYEEKENVRTIFKKYVHEFPNAGTWYKWIKYEME 267
Query: 238 MG--EVDRARNVYERAVEKLA--------DDEEAEQLFVAFAEFEERCKETERARCIYKF 287
+V+ R V+E AV+ L DDEE + ++ +E C E RA I+K
Sbjct: 268 NNRDDVNTVRAVFESAVDTLLSNKSEENDDDEEFATIISSWTSWEVSCGEASRANEIFKL 327
Query: 288 ALDH------IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD 341
LD+ I +Y FV FEK +G+++ IE +++ KRR +YE E++ +P +YD
Sbjct: 328 LLDNKTNKLEISDKTKSSIYTAFVEFEKNFGNKDSIEQSVLIKRRIKYEQEIQNDPYDYD 387
Query: 342 IWFDYIRLEESVGNKERAREVYERAIANV 370
W+ Y+ L ++ NK +++ NV
Sbjct: 388 SWWKYMTLLQNSSNKSDLENAFKKVTGNV 416
Score = 290 (107.1 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 73/254 (28%), Positives = 124/254 (48%)
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ 220
+W YI+ E R IF++++H P+ W +IK+E+ N +
Sbjct: 224 VWDAYINFEARYEEKENVRTIFKKYVHEFPNAGTWYKWIKYEMENNRDD----------- 272
Query: 221 CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETER 280
V+T ++ A FE VD + E+ DDEE + ++ +E C E R
Sbjct: 273 ----VNT-VR-AVFE---SAVD---TLLSNKSEENDDDEEFATIISSWTSWEVSCGEASR 320
Query: 281 ARCIYKFALDH------IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334
A I+K LD+ I +Y FV FEK +G+++ IE +++ KRR +YE E++
Sbjct: 321 ANEIFKLLLDNKTNKLEISDKTKSSIYTAFVEFEKNFGNKDSIEQSVLIKRRIKYEQEIQ 380
Query: 335 KNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRY-WQRYIYLWINYALYE 393
+P +YD W+ Y+ L ++ NK +++ NV + K W+RYI WI YA +E
Sbjct: 381 NDPYDYDSWWKYMTLLQNSSNKSDLENAFKKVTGNVVHDKHKSIKWRRYIMFWIWYAFWE 440
Query: 394 ELDAGDMERTRDVY 407
E+ + + R+++
Sbjct: 441 EMTNNNPDSAREIW 454
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 65/308 (21%), Positives = 140/308 (45%)
Query: 97 YAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP 156
Y + E +K+F S+ E+++ + R +KY E E++N ++ + W + +TLL
Sbjct: 347 YTAFVEFEKNFGNKDSI-EQSVLIKRR-----IKY-EQEIQNDPYDY--DSWWKYMTLLQ 397
Query: 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFE-LRYNEVERARQIY 215
+++ GNV + +W ++ W+ Y +E + N + AR+I+
Sbjct: 398 NSSNKSDLENAFKKVTGNVVHDKHKSIKWRRYI---MFWIWYAFWEEMTNNNPDSAREIW 454
Query: 216 ERFVQCHPKVS-----TWIKYAKFEMKMGE--VDRARNVYERAVEKLADDEEAEQLFVAF 268
++ P S WI Y++FE++ E + +AR + RA+ + + ++ ++F +
Sbjct: 455 NNCLKVIPHKSFTFAKVWIGYSEFELRNSEDGLAKARKILGRAIGQTSINKPKIKIFKYY 514
Query: 269 AEFEERCKETERARCIYKFALDH--IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRR 326
+ E++ + R R +++ L+ + +E + K+V FE + + D+I+ R
Sbjct: 515 IDLEKKLGDWNRVRLLFQKWLEVSLLTTSSSELVIEKYVEFESSIEEYDRC-DSILSSAR 573
Query: 327 FQYEDEVRKNPMNYDIWFDY-IRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
E+ + N + + + ++ RE+Y RA+ + P
Sbjct: 574 QLSENPEYSSSFNLQRLLEITVEFYKEEMQYDKIREIY-RALLDKDPNAHN--------- 623
Query: 386 WINYALYE 393
WI++AL+E
Sbjct: 624 WISFALFE 631
Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 61/244 (25%), Positives = 108/244 (44%)
Query: 135 EMKNKFINHARNV-WDRAVTLL-PRVDQLWYKYIHMEEMLGNVA-GARQIFERWMHWMPD 191
+++N F NV D+ ++ R W Y EEM N AR+I+ + +P
Sbjct: 404 DLENAFKKVTGNVVHDKHKSIKWRRYIMFWIWYAFWEEMTNNNPDSAREIWNNCLKVIPH 463
Query: 192 Q-----QGWLSYIKFELRYNE--VERARQIYERFV-QCH---PKVSTWIKYAKFEMKMGE 240
+ + W+ Y +FELR +E + +AR+I R + Q PK+ + Y E K+G+
Sbjct: 464 KSFTFAKVWIGYSEFELRNSEDGLAKARKILGRAIGQTSINKPKIKIFKYYIDLEKKLGD 523
Query: 241 VDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETERARCIYKFA--LDHIPKGRA 297
+R R ++++ +E L +E + + EFE +E +R I A L P+ +
Sbjct: 524 WNRVRLLFQKWLEVSLLTTSSSELVIEKYVEFESSIEEYDRCDSILSSARQLSENPEYSS 583
Query: 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKE 357
++ + ++ E D I R Y + K+P N W + E S+ + E
Sbjct: 584 SFNLQRLLEITVEFYKEEMQYDKI----REIYRALLDKDP-NAHNWISFALFESSIPSAE 638
Query: 358 RARE 361
+ E
Sbjct: 639 QLEE 642
Score = 140 (54.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 42/151 (27%), Positives = 76/151 (50%)
Query: 82 DLIRRVRWNTGV--WIKYAKWEE-SQKDFNRARSVWERALEV-DYRNHT---LWLKYAEV 134
D + ++W + WI YA WEE + + + AR +W L+V +++ T +W+ Y+E
Sbjct: 419 DKHKSIKWRRYIMFWIWYAFWEEMTNNNPDSAREIWNNCLKVIPHKSFTFAKVWIGYSEF 478
Query: 135 EMKNKF--INHARNVWDRAV--TLL--PRVDQLWYKYIHMEEMLGNVAGARQIFERWMH- 187
E++N + AR + RA+ T + P++ Y YI +E+ LG+ R +F++W+
Sbjct: 479 ELRNSEDGLAKARKILGRAIGQTSINKPKIKIFKY-YIDLEKKLGDWNRVRLLFQKWLEV 537
Query: 188 -WMPDQQGWL---SYIKFELRYNEVERARQI 214
+ L Y++FE E +R I
Sbjct: 538 SLLTTSSSELVIEKYVEFESSIEEYDRCDSI 568
>SGD|S000004107 [details] [associations]
symbol:CLF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
evidence=IDA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
[GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
GO:GO:0000354 Uniprot:Q12309
Length = 687
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 135/357 (37%), Positives = 211/357 (59%)
Query: 63 ITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDY 122
I D EL +Y+ RKR E+E ++R R + G WI+YA++E Q D RARS++ERAL VD
Sbjct: 37 ILDLEELREYQRRKRTEYEGYLKRNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDS 96
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIF 182
LW++Y + E+K K INHARN+ +RA++ LPRVD+LWYKY+ +EE L NV R ++
Sbjct: 97 SFIPLWIRYIDAELKVKCINHARNLMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLY 156
Query: 183 ERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVD 242
+W P W S++ FE+R R+IY ++V HP++ TW+K+ +FE + G +
Sbjct: 157 TKWCSLEPGVNAWNSFVDFEIRQKNWNGVREIYSKYVMAHPQMQTWLKWVRFENRHGNTE 216
Query: 243 RARNVYERAVEKLAD--------DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294
R+VY A++ +A+ D E +L +FA +E +E ER+ +Y+ A++ P
Sbjct: 217 FTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAAQQEYERSSALYQIAIEKWPS 276
Query: 295 GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRL-EESV 353
+ L + FEKQ+GD IE+ I KR+ +YE + N +YD W+ Y+ L ES
Sbjct: 277 NQL--LKAGLLDFEKQFGDINSIEETISYKRKMEYETILSNNAYDYDTWWLYLDLISESF 334
Query: 354 GNKERAREVYERAIANVPPAEEKR--YWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
++ + +E+AI + P E + W+RYIYLW+ Y Y EL+ + +++Q
Sbjct: 335 --PKQIMQTFEKAIVDSRPKELSKNVQWKRYIYLWMRYICYVELELENSLLEEELFQ 389
Score = 195 (73.7 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 59/236 (25%), Positives = 117/236 (49%)
Query: 115 ERALEVDYRNHT-LWLKY---AEVEMKNKFINHARNVWDRAVT-LLPR----VDQLWYKY 165
E + V ++ + LW++Y E+E++N + ++ R + ++P ++W Y
Sbjct: 353 ELSKNVQWKRYIYLWMRYICYVELELENSLLEE--ELFQRLIDDIIPHKHFTFSKIWLMY 410
Query: 166 IHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK- 224
+V AR+I + + P + + YI+ E++ E +R R+IYE+F++ P
Sbjct: 411 AKFLIRHDDVPKARKILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSD 470
Query: 225 VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD--DEEAE-QLFVAFAEFEERCKETERA 281
+ W +Y + E +G+ DR R +Y A+++ +D +EA+ L + FE +E E+A
Sbjct: 471 LQIWSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQKYITFETESQEFEKA 530
Query: 282 RCIYKFALD---HIPKGRAE-DLYRKFVAFEKQYGDREGIEDAIVGKR-RFQYEDE 332
R +Y+ L+ + P+ E +Y+ E+Q D ++ V + F+ DE
Sbjct: 531 RKLYRRYLELNQYSPQSWIEFAMYQTSTPTEQQLLDLAKLQSENVDEDIEFEITDE 586
Score = 190 (71.9 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 59/221 (26%), Positives = 105/221 (47%)
Query: 161 LWYKYI-HMEEMLGNVAGARQIFERWMH-WMPDQQG-----WLSYIKFELRYNEVERARQ 213
LW +YI ++E L N ++F+R + +P + WL Y KF +R+++V +AR+
Sbjct: 366 LWMRYICYVELELENSLLEEELFQRLIDDIIPHKHFTFSKIWLMYAKFLIRHDDVPKARK 425
Query: 214 IYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEE 273
I + + PK T+ Y + E+K+ E DR R +YE+ +E D Q++ + E EE
Sbjct: 426 ILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSDL---QIWSQYGELEE 482
Query: 274 RCKETERARCIYKFALDH----IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
+ +R R IY ALD + K L +K++ FE + + E K R Y
Sbjct: 483 NLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQKYITFETESQEFE--------KARKLY 534
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANV 370
+ N + W ++ + S +++ ++ + NV
Sbjct: 535 RRYLELNQYSPQSWIEFAMYQTSTPTEQQLLDLAKLQSENV 575
Score = 167 (63.8 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 70/296 (23%), Positives = 137/296 (46%)
Query: 81 EDLIRRVRWN-TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK 139
+D+I + + +W+ YAK+ D +AR + +A+ + + T + Y E+E+K K
Sbjct: 393 DDIIPHKHFTFSKIWLMYAKFLIRHDDVPKARKILGKAIGLCPKAKT-FKGYIELEVKLK 451
Query: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD---QQGWL 196
+ R ++++ + P Q+W +Y +EE LG+ R I+ + D ++ +
Sbjct: 452 EFDRVRKIYEKFIEFQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKI 511
Query: 197 ----SYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERA 251
YI FE E E+AR++Y R+++ + +WI++A ++ + ++ +
Sbjct: 512 VLLQKYITFETESQEFEKARKLYRRYLELNQYSPQSWIEFAMYQTSTPTEQQLLDLAKLQ 571
Query: 252 VEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311
E + +D E E + E R K E A +K D +GR L +E+ Y
Sbjct: 572 SENVDEDIEFE--ITDENKLEAR-KVFEEAIVFFKEKDDK--QGRLSIL-EALKDYEETY 625
Query: 312 GDREGIEDAIVGKRRFQYEDEVR-KNPMNYDIWFDYIRLEESVGNKERAREVYERA 366
G ++ V KR + +VR +N + + + DYI ++ +K + + E A
Sbjct: 626 GTE--LDQETVKKRFPKVIKKVRLQNGVEEE-FVDYIFPDDIDDDKPKPSKFLELA 678
>ZFIN|ZDB-GENE-030131-2575 [details] [associations]
symbol:prpf6 "PRP6 pre-mRNA processing factor 6
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-030131-2575 GO:GO:0005634 Gene3D:1.25.40.10
GO:GO:0000398 KO:K12855 InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 HOVERGEN:HBG023330 EMBL:BC056710 IPI:IPI00484708
RefSeq:NP_997820.1 UniGene:Dr.150395 ProteinModelPortal:Q6PH55
STRING:Q6PH55 GeneID:323855 KEGG:dre:323855 InParanoid:Q6PH55
NextBio:20808461 ArrayExpress:Q6PH55 Bgee:Q6PH55 Uniprot:Q6PH55
Length = 944
Score = 232 (86.7 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 74/293 (25%), Positives = 126/293 (43%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153
W++ A S AR+++ AL+V ++WL+ A E N + RAV
Sbjct: 546 WMEDADSCVSHGALECARAIYAHALQVFPSKKSVWLRAAYFEKNNGTRESLEALLQRAVA 605
Query: 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERAR 212
P+ + LW + + G+V AR I P+ + WL+ +K E NE ERAR
Sbjct: 606 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 665
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
++ + P ++K + E +G ++ A +E E L E+ +L++ + E
Sbjct: 666 RLLAKARSSAPTARVFMKSVRLEWVLGNIEAA---HELCTEALKHYEDFPKLWMMRGQIE 722
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E+ + +RAR Y L P + L+ E++ G AI+ K R
Sbjct: 723 EQSESIDRAREAYNQGLKKCPHSMS--LWLLLSRLEEKVGQLTRAR-AILEKARL----- 774
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
KNP + ++W + +RLE G K A + +A+ P W ++L
Sbjct: 775 --KNPQSPELWLESVRLEYRAGLKNIANTLMAKALQECP--NSGILWSEAVFL 823
Score = 144 (55.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 62/316 (19%), Positives = 138/316 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW++ A +E++ ++ +RA+ + LWL A+ + + AR++ A
Sbjct: 579 VWLRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAF 638
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P +++W + +E AR++ + P + ++ ++ E +E A
Sbjct: 639 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVRLEWVLGNIEAAH 698
Query: 213 QIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
++ ++ + PK+ W+ + E + +DRAR Y + ++K + L++ +
Sbjct: 699 ELCTEALKHYEDFPKL--WMMRGQIEEQSESIDRAREAYNQGLKKCP---HSMSLWLLLS 753
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
EE+ + RAR I + A + ++ +L+ + V E + G + I + ++ K
Sbjct: 754 RLEEKVGQLTRARAILEKA--RLKNPQSPELWLESVRLEYRAG-LKNIANTLMAKA---- 806
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI--ANVPPAEEKRYW-QRYIYL- 385
+++ P + +W + + LE K ++ + ++ +V A K +W +R I
Sbjct: 807 ---LQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKA 863
Query: 386 --WINYALYEELDAGD 399
W + E D GD
Sbjct: 864 REWFLRTVKIEPDLGD 879
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 70/325 (21%), Positives = 134/325 (41%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ E + AR V +A E + +W+ A++E N + DRA+
Sbjct: 439 LWLALARLET----YENARRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAI 494
Query: 153 TLLPR--VD---QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----WLSYIKFEL 203
T L V+ + W + + G+V + + + +++ W+ +
Sbjct: 495 TSLRANGVEINREQWIQDAEECDKAGSVVTCQSVIRAVIGIGIEEEDCKHTWMEDADSCV 554
Query: 204 RYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
+ +E AR IY +Q P K S W++ A FE G + + +RAV A +AE
Sbjct: 555 SHGALECARAIYAHALQVFPSKKSVWLRAAYFEKNNGTRESLEALLQRAV---AHCPKAE 611
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
L++ A+ + + AR I A P +E+++ V E + + E +
Sbjct: 612 VLWLMGAKSKWLAGDVPAARSILALAFQANPN--SEEIWLAAVKLESENNEYERARRLLA 669
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ R + ++ +RLE +GN E A E+ A+ ++++ +
Sbjct: 670 ---------KARSSAPTARVFMKSVRLEWVLGNIEAAHELCTEAL---------KHYEDF 711
Query: 383 IYLWINYALYEELDAGDMERTRDVY 407
LW+ EE + ++R R+ Y
Sbjct: 712 PKLWMMRGQIEE-QSESIDRAREAY 735
Score = 135 (52.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 78/338 (23%), Positives = 140/338 (41%)
Query: 66 STEL-ADYRLRKR---KEFEDLIRRVR-WNTGVWIKYAKWEESQKDFNRARSVWERALEV 120
+ EL D R +KR K E++ + VR W T V + E +D AR + RA+E
Sbjct: 382 AAELETDIRAKKRVLRKALENVSKSVRLWKTAVEL------EEPED---ARIMLSRAVEC 432
Query: 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ 180
+ LWL A +E +AR V ++A +P +W +EE GN +
Sbjct: 433 CPTSVELWLALARLET----YENARRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEK 488
Query: 181 IFERWMHWMP------DQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS----TWIK 230
I +R + + +++ W+ + + V + + + + TW++
Sbjct: 489 IIDRAITSLRANGVEINREQWIQDAEECDKAGSVVTCQSVIRAVIGIGIEEEDCKHTWME 548
Query: 231 YAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALD 290
A + G ++ AR +Y A++ + +++ A FE+ E + + A+
Sbjct: 549 DADSCVSHGALECARAIYAHALQVFPSKKS---VWLRAAYFEKNNGTRESLEALLQRAVA 605
Query: 291 HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLE 350
H PK AE L+ + GD + FQ NP + +IW ++LE
Sbjct: 606 HCPK--AEVLWLMGAKSKWLAGDVPAARSILA--LAFQ------ANPNSEEIWLAAVKLE 655
Query: 351 ESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL-WI 387
ERAR + +A ++ P A R + + + L W+
Sbjct: 656 SENNEYERARRLLAKARSSAPTA---RVFMKSVRLEWV 690
Score = 126 (49.4 bits), Expect = 0.00017, P = 0.00017
Identities = 40/190 (21%), Positives = 85/190 (44%)
Query: 62 KITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD 121
+I + +E D R R+ + +++ + +W+ ++ EE RAR++ E+A +
Sbjct: 720 QIEEQSESID---RAREAYNQGLKKCPHSMSLWLLLSRLEEKVGQLTRARAILEKARLKN 776
Query: 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI 181
++ LWL+ +E + N A + +A+ P LW + + +E +
Sbjct: 777 PQSPELWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDA 836
Query: 182 FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKMGE 240
++ H D L+ K ++ +AR+ + R V+ P + W + KFE++ G
Sbjct: 837 LKKCEH---DPHVLLAVAKLFWSERKITKAREWFLRTVKIEPDLGDAWGFFYKFELQHGT 893
Query: 241 VDRARNVYER 250
++ V +R
Sbjct: 894 EEQQHEVKKR 903
>UNIPROTKB|F1N9U0 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0050681 "androgen receptor
binding" evidence=IEA] [GO:0071001 "U4/U6 snRNP" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
GO:GO:0045944 GO:GO:0005682 GO:GO:0003723 GO:GO:0003713
Gene3D:1.25.40.10 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 GO:GO:0006403 GO:GO:0071001 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:AADN02019178 EMBL:AADN02019179
EMBL:AADN02019180 IPI:IPI00589966 Ensembl:ENSGALT00000009656
Uniprot:F1N9U0
Length = 945
Score = 230 (86.0 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 74/277 (26%), Positives = 121/277 (43%)
Query: 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169
AR+++ AL+V ++WL+ A E + + RAV P+ + LW +
Sbjct: 563 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 622
Query: 170 EMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228
+ G+V AR I P+ + WL+ +K E NE ERAR++ + P +
Sbjct: 623 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVF 682
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
+K K E +G + A+ + E A+ E+ +L++ + EE+ + ERAR Y
Sbjct: 683 MKSVKLEWVLGNIAAAQELCEEALRHY---EDFPKLWMMKGQIEEQKELVERAREAYNQG 739
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
L P + L+ E++ G AI+ K R KNP N D+W + +R
Sbjct: 740 LKKCP--HSIPLWLLLSRLEEKVGQLTRAR-AILEKSRL-------KNPKNADLWLESVR 789
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
LE G K A + +A+ P W I+L
Sbjct: 790 LEYRAGLKNIANTLMAKALQECP--NSGILWSEAIFL 824
Score = 147 (56.8 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 66/316 (20%), Positives = 138/316 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW++ A +E++ ++ +RA+ + LWL A+ + + AR++ A
Sbjct: 580 VWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAF 639
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P +++W + +E AR++ + P + ++ +K E + A+
Sbjct: 640 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQ 699
Query: 213 QIYE---RFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
++ E R + PK+ W+ + E + V+RAR Y + ++K + L++ +
Sbjct: 700 ELCEEALRHYEDFPKL--WMMKGQIEEQKELVERAREAYNQGLKKCP---HSIPLWLLLS 754
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
EE+ + RAR I + + PK DL+ + V E + G + I + ++ K
Sbjct: 755 RLEEKVGQLTRARAILEKSRLKNPKNA--DLWLESVRLEYRAG-LKNIANTLMAKA---- 807
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI--ANVPPAEEKRYW-QRYIYL- 385
+++ P + +W + I LE K ++ + ++ +V A K +W +R I
Sbjct: 808 ---LQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKA 864
Query: 386 --WINYALYEELDAGD 399
W + + + D GD
Sbjct: 865 REWFHRTVKIDSDLGD 880
Score = 143 (55.4 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 74/325 (22%), Positives = 136/325 (41%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ E + AR V +A E + +W+ A++E N + DRA+
Sbjct: 440 LWLALARLET----YENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAI 495
Query: 153 TLLPR--VD---QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----WLSYIKFEL 203
T L V+ + W + + G+VA + I + +++ W+ +
Sbjct: 496 TSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRKHTWMEDADSCV 555
Query: 204 RYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
+N +E AR IY +Q P K S W++ A FE G + + +RAV A +AE
Sbjct: 556 AHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV---AHCPKAE 612
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
L++ A+ + + AR I A P +E+++ V E + + E +
Sbjct: 613 VLWLMGAKSKWLAGDVPAARSILALAFQANPN--SEEIWLAAVKLESENNEYERARRLLA 670
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ R + ++ ++LE +GN A+E+ E A+ R+++ +
Sbjct: 671 ---------KARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEAL---------RHYEDF 712
Query: 383 IYLWINYALYEELDAGDMERTRDVY 407
LW+ EE +ER R+ Y
Sbjct: 713 PKLWMMKGQIEE-QKELVERAREAY 736
Score = 129 (50.5 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 41/192 (21%), Positives = 85/192 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119
K +I + EL + R R+ + +++ + +W+ ++ EE RAR++ E++
Sbjct: 719 KGQIEEQKELVE---RAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRL 775
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179
+ +N LWL+ +E + N A + +A+ P LW + I +E +
Sbjct: 776 KNPKNADLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSV 835
Query: 180 QIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKM 238
++ H D L+ K ++ +AR+ + R V+ + W + KFE++
Sbjct: 836 DALKKCEH---DPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 892
Query: 239 GEVDRARNVYER 250
G ++ V +R
Sbjct: 893 GTEEQQEEVRKR 904
Score = 121 (47.7 bits), Expect = 0.00059, P = 0.00059
Identities = 60/265 (22%), Positives = 108/265 (40%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHT-LWLKYAEVEMKNKFINHARNVWDRA 151
V++K K E + A+ + E AL Y + LW+ ++E + + + AR +++
Sbjct: 681 VFMKSVKLEWVLGNIAAAQELCEEALR-HYEDFPKLWMMKGQIEEQKELVERAREAYNQG 739
Query: 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVER 210
+ P LW +EE +G + AR I E+ P WL ++ E R
Sbjct: 740 LKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNADLWLESVRLEYRAGLKNI 799
Query: 211 ARQIYERFVQ-CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
A + + +Q C W + E + + ++V A++K D L VA
Sbjct: 800 ANTLMAKALQECPNSGILWSEAIFLEARPQR--KTKSV--DALKKCEHDPHV-LLAVAKL 854
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
+ ER K T+ ++ G D + F FE Q+G E E+ ++R +
Sbjct: 855 FWSER-KITKAREWFHRTVKIDSDLG---DAWAFFYKFELQHGTEEQQEEV---RKRCE- 906
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVG 354
E R + D+ D + ++ +G
Sbjct: 907 NAEPRHGELWCDVSKDIVNWQKKIG 931
>FB|FBgn0036828 [details] [associations]
symbol:CG6841 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005684 "U2-type spliceosomal complex" evidence=ISS]
[GO:0005682 "U5 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IC] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
EMBL:AE014296 GO:GO:0022008 GO:GO:0005682 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 FlyBase:FBgn0036828 EMBL:BT021415
RefSeq:NP_649073.1 UniGene:Dm.11665 SMR:Q9VVU6 MINT:MINT-316737
STRING:Q9VVU6 EnsemblMetazoa:FBtr0075068 GeneID:40064
KEGG:dme:Dmel_CG6841 UCSC:CG6841-RA InParanoid:Q9VVU6
GenomeRNAi:40064 NextBio:816818 Uniprot:Q9VVU6
Length = 931
Score = 225 (84.3 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 78/293 (26%), Positives = 128/293 (43%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153
WI A++ + F AR+V+ AL++ ++WL+ A E + + RAV
Sbjct: 533 WIDDAEFCAKENAFECARAVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVA 592
Query: 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERAR 212
P+ + LW + M G+V AR I P+ + WL+ +K E +E ERAR
Sbjct: 593 HCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKLESENSEYERAR 652
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
++ + P +K A+ E + + D A + E AVE D +L++ + E
Sbjct: 653 RLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFPD---FPKLWMMKGQIE 709
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E+ + T+ A Y L P + L+ E +R+G+ + K R E
Sbjct: 710 EQQRRTDDAAATYTLGLKKCPT--SIPLWILSANLE----ERKGV----LTKARSILERG 759
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
+NP +W + IR+E G KE A + RA+ P A E W I++
Sbjct: 760 RLRNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNAGE--LWAEAIFM 810
Score = 159 (61.0 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 74/316 (23%), Positives = 134/316 (42%)
Query: 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHA 144
R + + +WIK A E K R V+ +ALE + LW A VE++N + A
Sbjct: 357 RHIPTSVRIWIKAADLESETK---AKRRVFRKALEHIPNSVRLWK--AAVELENP--DDA 409
Query: 145 RNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKFEL 203
R + RAV +LW +E AR++ + +P D+Q W + K E
Sbjct: 410 RILLSRAVECCNTSVELWLALARLE----TYENARKVLNKARENIPTDRQIWTTAAKLEE 465
Query: 204 RYNEVERARQIYERFVQCHP----KVST--WIKYAKFEMKMGEVDRARNVYERAVEKLAD 257
+ +I +R + +++ W + A K G V+ +++ + + +
Sbjct: 466 ANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEAIEAEKSGAVNCCQSIVKAVIGIGVE 525
Query: 258 DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGI 317
+E+ +Q ++ AEF + E AR +Y AL P ++ ++ + FEK +G RE +
Sbjct: 526 EEDRKQTWIDDAEFCAKENAFECARAVYAHALQIFPSKKS--IWLRAAYFEKNHGTRESL 583
Query: 318 EDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKR 377
E A++ + V P + +W + + G+ AR + A P +E+
Sbjct: 584 E-ALLQRA-------VAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSED-- 633
Query: 378 YWQRYIYLWINYALYE 393
W + L + YE
Sbjct: 634 IWLAAVKLESENSEYE 649
Score = 126 (49.4 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 44/182 (24%), Positives = 83/182 (45%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153
WI A+ EE AR++ R E++ ++ LWL+ A ++ + A+ V +A
Sbjct: 302 WIASARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDT----AKAVIAQAAR 357
Query: 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQ-QGWLSYIKFELRYNEVERAR 212
+P ++W K +E R++F + + +P+ + W + ++ E + AR
Sbjct: 358 HIPTSVRIWIKAADLES---ETKAKRRVFRKALEHIPNSVRLWKAAVELE----NPDDAR 410
Query: 213 QIYERFVQC-HPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ R V+C + V W+ A+ E + AR V +A E + D Q++ A+
Sbjct: 411 ILLSRAVECCNTSVELWLALARLET----YENARKVLNKARENIPTDR---QIWTTAAKL 463
Query: 272 EE 273
EE
Sbjct: 464 EE 465
Score = 121 (47.7 bits), Expect = 0.00058, P = 0.00058
Identities = 58/314 (18%), Positives = 125/314 (39%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W++ A +E++ ++ +RA+ ++ LWL A+ + + AR + A
Sbjct: 566 IWLRAAYFEKNHGTRESLEALLQRAVAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAF 625
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P + +W + +E AR++ + P + + + E + + A
Sbjct: 626 QANPNSEDIWLAAVKLESENSEYERARRLLAKARGSAPTPRVMMKSARLEWALEKFDEAL 685
Query: 213 QIYERFVQCHPKV-STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
++ E V+ P W+ + E + D A Y ++K + L++ A
Sbjct: 686 RLLEEAVEVFPDFPKLWMMKGQIEEQQRRTDDAAATYTLGLKKCPT---SIPLWILSANL 742
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
EER +AR I + PK L+ + + E + G +E I ++ +
Sbjct: 743 EERKGVLTKARSILERGRLRNPKVAV--LWLEAIRVELRAGLKE-IASTMMARA------ 793
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI--ANVPPAEEKRYWQRYIYL---- 385
+++ P ++W + I +E K ++ + ++ +V A K +W + +
Sbjct: 794 -LQECPNAGELWAEAIFMETKPQRKTKSVDALKKCEHDPHVLLAVSKLFWSEHKFSKCRD 852
Query: 386 WINYALYEELDAGD 399
W N + + D GD
Sbjct: 853 WFNRTVKIDPDLGD 866
Score = 120 (47.3 bits), Expect = 0.00074, P = 0.00074
Identities = 39/161 (24%), Positives = 68/161 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+WI A EE + +ARS+ ER + + LWL+ VE++ A + RA+
Sbjct: 735 LWILSANLEERKGVLTKARSILERGRLRNPKVAVLWLEAIRVELRAGLKEIASTMMARAL 794
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P +LW + I ME + ++ H D L+ K ++ + R
Sbjct: 795 QECPNAGELWAEAIFMETKPQRKTKSVDALKKCEH---DPHVLLAVSKLFWSEHKFSKCR 851
Query: 213 QIYERFVQCHPKVS-TWIKYAKFEMKMGEVDRARNVYERAV 252
+ R V+ P + W + KFE+ G + + V +R +
Sbjct: 852 DWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCI 892
Score = 48 (22.0 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 324 KRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQR 381
K R + V+ +P D W + + E G + + +EV +R I+ P E W R
Sbjct: 849 KCRDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPTHGES--WCR 904
>TAIR|locus:2184236 [details] [associations]
symbol:AT5G28740 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 EMBL:AF262041 eggNOG:NOG289100 KO:K12867
HOGENOM:HOG000176133 OMA:RRYLMYD IPI:IPI00544799 RefSeq:NP_198226.1
UniGene:At.47571 ProteinModelPortal:Q9LKU3 SMR:Q9LKU3 IntAct:Q9LKU3
STRING:Q9LKU3 PaxDb:Q9LKU3 PRIDE:Q9LKU3 EnsemblPlants:AT5G28740.1
GeneID:832986 KEGG:ath:AT5G28740 TAIR:At5g28740 InParanoid:Q9LKU3
PhylomeDB:Q9LKU3 ProtClustDB:CLSN2687354 Genevestigator:Q9LKU3
Uniprot:Q9LKU3
Length = 917
Score = 230 (86.0 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 72/283 (25%), Positives = 127/283 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W Y EES R+V+E+ L++ + + YA + +NK+ A V++R V
Sbjct: 517 LWSFYVDLEESLGTLESTRAVYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGV 576
Query: 153 TLL--PRVDQLWYKYI-HMEEMLGN--VAGARQIFERWMHWMPDQQG---WLSYIKFELR 204
+ P V +W Y+ + G + AR++FE + P +L Y K E
Sbjct: 577 KIFKYPHVKDIWVTYLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEED 636
Query: 205 YNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGE---VDRARNVYERAVEKLADDEEA 261
Y +RA ++YE + P+ Y + + E V R R +YE+A+E ++
Sbjct: 637 YGLAKRAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDV 696
Query: 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
+ + + FAE E E +RAR +YK++ + + K+ FE Q+G+ + + +
Sbjct: 697 KIMCIKFAELERSLGEIDRARALYKYSSQFADPRSDPEFWNKWHEFEVQHGNEDTYREML 756
Query: 322 VGKRRFQ--YEDE---VRKNPMNYDIWFDYIRLEESVGNKERA 359
KR Y + +N M D D +E++ G +RA
Sbjct: 757 RIKRSVSASYSQTHFILPENMMQKDKLLD---VEDAKGELKRA 796
Score = 208 (78.3 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 76/302 (25%), Positives = 142/302 (47%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW ++A+ E K+F A + RA V VE++ + A + +
Sbjct: 463 VWCEWAEMELRHKNFKGALELMRRATAVP-----------TVEVRRRV---AADGNEPVQ 508
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEV-ER 210
L R +LW Y+ +EE LG + R ++E+ + + Q ++Y F L N+ E
Sbjct: 509 MKLHRSLRLWSFYVDLEESLGTLESTRAVYEKILDLRIATPQIIMNYA-FLLEENKYFED 567
Query: 211 ARQIYERFVQC--HPKVST-WIKY-AKFEMKMGE--VDRARNVYERAVEKLADDEEAEQL 264
A ++YER V+ +P V W+ Y KF + G+ ++RAR ++E AV +A + L
Sbjct: 568 AFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYGKTKLERARELFEHAVS-MAPSDAVRTL 626
Query: 265 FVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ-YGDREGIEDAIVG 323
++ +A+ EE +RA +Y+ A +P+G+ ++Y +++ + +G V
Sbjct: 627 YLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFG---------VP 677
Query: 324 KRRFQYEDEVRKNPMNYDI---WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
+ R YE + + D+ + LE S+G +RAR +Y+ + P + +W
Sbjct: 678 RTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALYKYSSQFADPRSDPEFWN 737
Query: 381 RY 382
++
Sbjct: 738 KW 739
Score = 200 (75.5 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 71/294 (24%), Positives = 138/294 (46%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYR--NH--TLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK E+ KD R ++++A++V+Y+ +H ++W ++AE+E+++K A +
Sbjct: 425 LWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALELM 484
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
RA T +P V+ + + A + + +H + W Y+ E +
Sbjct: 485 RRA-TAVPTVE--------VRRRVA--ADGNEPVQMKLH--RSLRLWSFYVDLEESLGTL 531
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEMKMGEV-DRARNVYERAVEKLADDEEAEQLFVA 267
E R +YE+ + I F ++ + + A VYER V K+ + ++V
Sbjct: 532 ESTRAVYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGV-KIFKYPHVKDIWVT 590
Query: 268 F-AEFEERCKET--ERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGK 324
+ +F +R +T ERAR +++ A+ P LY ++ E+ YG + K
Sbjct: 591 YLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYG---------LAK 641
Query: 325 RRFQ-YEDEVRKNP--MNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375
R + YE+ +K P +++ YI + R RE+YE+AI + P ++
Sbjct: 642 RAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKD 695
Score = 180 (68.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 66/251 (26%), Positives = 119/251 (47%)
Query: 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI 181
+R+ LW Y ++E + R V+++ + L Q+ Y + E A ++
Sbjct: 512 HRSLRLWSFYVDLEESLGTLESTRAVYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKV 571
Query: 182 FERWMHWM--PDQQG-WLSYI-KFELRYNE--VERARQIYERFVQCHPK--VST-WIKYA 232
+ER + P + W++Y+ KF RY + +ERAR+++E V P V T +++YA
Sbjct: 572 YERGVKIFKYPHVKDIWVTYLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYA 631
Query: 233 KFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH- 291
K E G RA VYE A +K+ + ++ E + + E R R IY+ A++
Sbjct: 632 KLEEDYGLAKRAMKVYEEATKKVPEGQKLEMYEIYISRAAE-IFGVPRTREIYEQAIESG 690
Query: 292 IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEE 351
+P + + KF E+ G+ + A+ K Q+ D R +P ++ W ++ E
Sbjct: 691 LPHKDVKIMCIKFAELERSLGEIDRAR-ALY-KYSSQFADP-RSDPEFWNKWHEF---EV 744
Query: 352 SVGNKERAREV 362
GN++ RE+
Sbjct: 745 QHGNEDTYREM 755
Score = 149 (57.5 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 59/262 (22%), Positives = 118/262 (45%)
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQIFE 183
HTLW+ +A++ +K + + R ++D+AV + VD L + EM + F+
Sbjct: 423 HTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEM----ELRHKNFK 478
Query: 184 RWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDR 243
+ M + + E+R + + ++ H + W Y E +G ++
Sbjct: 479 GALELM---RRATAVPTVEVRRRVAADGNEPVQ--MKLHRSLRLWSFYVDLEESLGTLES 533
Query: 244 ARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYR 302
R VYE+ ++ ++A Q+ + +A E K E A +Y+ + +D++
Sbjct: 534 TRAVYEKILDLRIA----TPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWV 589
Query: 303 KFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERARE 361
++ F K+YG + +E A + F++ + + ++ Y +LEE G +RA +
Sbjct: 590 TYLTKFVKRYGKTK-LERA---RELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMK 645
Query: 362 VYERAIANVPPAEEKRYWQRYI 383
VYE A VP ++ ++ YI
Sbjct: 646 VYEEATKKVPEGQKLEMYEIYI 667
Score = 119 (46.9 bits), Expect = 0.00094, P = 0.00094
Identities = 68/269 (25%), Positives = 119/269 (44%)
Query: 127 LWLKY----AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME-EMLGNVA----- 176
LW +Y AE K +FI +++RA+ LP +LWY Y+ +++ N+
Sbjct: 29 LWWRYLIAKAESPFKKRFI-----IYERALKALPGSYKLWYAYLRERLDIVRNLPVTHPQ 83
Query: 177 --GARQIFERW---MHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS---TW 228
FER MH MP + W+ Y++ + R R+ ++R + P W
Sbjct: 84 YDSLNNTFERGLVTMHKMP--RIWVMYLQTLTVQQLITRTRRTFDRALCALPVTQHDRIW 141
Query: 229 IKYAKFEMKMG-EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET-ERARCIYK 286
Y F + G ++ + VY R + + D E+ F+ F ER +E+ ER +
Sbjct: 142 EPYLVFVSQNGIPIETSLRVYRRYL--MYDPSHIEE-FIEFLVKSERWQESAERLASVLN 198
Query: 287 FALDHIPKGRAED-LYRKFVAFEKQYGDR-EGIE-DAIV--GKRRFQYEDEVRKNPMNYD 341
+ KG+ + L+ + + + G+ DAI+ G R+F DEV M +
Sbjct: 199 DDKFYSIKGKTKHKLWLELCELLVHHANVISGLNVDAIIRGGIRKFT--DEVG---MLWT 253
Query: 342 IWFDYIRLEESVGNKERAREVYERAIANV 370
DY + +++ E+AR++YE + V
Sbjct: 254 SLADYY-IRKNL--LEKARDIYEEGMMKV 279
Score = 37 (18.1 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 67 TELADYRLRK------RKEFEDLIRRV---RWNTGVWIKYAKWEES 103
T LADY +RK R +E+ + +V R + ++ Y+++EES
Sbjct: 253 TSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEES 298
>FB|FBgn0033859 [details] [associations]
symbol:CG6197 species:7227 "Drosophila melanogaster"
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
Uniprot:A1Z9G2
Length = 883
Score = 224 (83.9 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 66/284 (23%), Positives = 124/284 (43%)
Query: 66 STELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH 125
+T + ++ + E + R+ + VW YA EES F ++V+ER +++
Sbjct: 458 ATAMPKRKIAYYDDTETVQARLHRSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICTP 517
Query: 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HMEEMLGN-VAGARQ 180
+ + Y ++ + A +++ ++L P V +W Y+ +E G + AR
Sbjct: 518 QIIINYGMFLEEHNYFEEAYRAYEKGISLFKWPNVYDIWNSYLTKFLERYGGTKLERARD 577
Query: 181 IFERWMHWMPDQQG---WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMK 237
+FE+ + P + +L Y K E + A +Y+R + + Y F K
Sbjct: 578 LFEQCLDQCPPEHAKYFYLLYAKLEEEHGLARHAMSVYDRATSAVKEDEMFDMYNIFIKK 637
Query: 238 MGEV---DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294
E+ R R +YE+A+E L + + + V FAE E + E +RAR IY
Sbjct: 638 AAEIYGLPRTREIYEKAIESLPE-QNMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDP 696
Query: 295 GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM 338
D ++ + FE ++G+ + + + + KR Q + N M
Sbjct: 697 RITADFWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMM 740
Score = 178 (67.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 69/290 (23%), Positives = 132/290 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+++AK+ E+ AR V+ER EV+Y +W ++AE+E++ + A +
Sbjct: 396 LWVEFAKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCEWAEMELRQQQFEAALKLM 455
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
RA T +P+ ++ Y Y E + + + ++ W Y E +
Sbjct: 456 QRA-TAMPK-RKIAY-YDDTETVQARLHRSLKV-------------WSMYADLEESFGTF 499
Query: 209 ERARQIYERFVQ---CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +YER + C P++ I Y F + + A YE+ + L ++
Sbjct: 500 KTCKAVYERIIDLKICTPQII--INYGMFLEEHNYFEEAYRAYEKGIS-LFKWPNVYDIW 556
Query: 266 VAF-AEFEERCKET--ERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAI 321
++ +F ER T ERAR +++ LD P A+ Y + E+++G R +
Sbjct: 557 NSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEEEHGLARHAMS--- 613
Query: 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVP 371
V R V+++ M +D++ +I+ + R RE+YE+AI ++P
Sbjct: 614 VYDRA---TSAVKEDEM-FDMYNIFIKKAAEIYGLPRTREIYEKAIESLP 659
Score = 169 (64.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 62/251 (24%), Positives = 117/251 (46%)
Query: 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY-IHMEEMLGNVAGARQ 180
+R+ +W YA++E + V++R + L Q+ Y + +EE A +
Sbjct: 480 HRSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQIIINYGMFLEEH-NYFEEAYR 538
Query: 181 IFERWMH---WMPDQQGWLSYI-KFELRYN--EVERARQIYERFV-QCHPKVSTW--IKY 231
+E+ + W W SY+ KF RY ++ERAR ++E+ + QC P+ + + + Y
Sbjct: 539 AYEKGISLFKWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLY 598
Query: 232 AKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH 291
AK E + G A +VY+RA + +DE + ++ F + R R IY+ A++
Sbjct: 599 AKLEEEHGLARHAMSVYDRATSAVKEDEMFD-MYNIFIKKAAEIYGLPRTREIYEKAIES 657
Query: 292 IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEE 351
+P+ + KF E + G+ ++ A + + + +V + D W + E
Sbjct: 658 LPEQNMRHMCVKFAELETKLGE---VDRA---RAIYAHCSQVCDPRITADFWQTWKEFEV 711
Query: 352 SVGNKERAREV 362
GN++ RE+
Sbjct: 712 RHGNEDTMREM 722
Score = 156 (60.0 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 67/309 (21%), Positives = 126/309 (40%)
Query: 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR 145
RV + G ++Y K E+ +VW E++ R ++
Sbjct: 414 RVVFERGTEVEYVKVED-------LAAVWCEWAEMELRQQQFEAALKLMQRATAMPKRKI 466
Query: 146 NVWDRAVTLLPRVDQ---LWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKF 201
+D T+ R+ + +W Y +EE G + ++ER + + Q ++Y F
Sbjct: 467 AYYDDTETVQARLHRSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQIIINYGMF 526
Query: 202 ELRYNEVERARQIYERFVQCH--PKV-STWIKY-AKFEMKMG--EVDRARNVYERAVEKL 255
+N E A + YE+ + P V W Y KF + G +++RAR+++E+ +++
Sbjct: 527 LEEHNYFEEAYRAYEKGISLFKWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQ- 585
Query: 256 ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDRE 315
E A+ ++ +A+ EE A +Y A + + D+Y F+ K+ +
Sbjct: 586 CPPEHAKYFYLLYAKLEEEHGLARHAMSVYDRATSAVKEDEMFDMYNIFI---KKAAEIY 642
Query: 316 GIEDAIVGKRRFQYEDEVRKNP-MNY-DIWFDYIRLEESVGNKERAREVYERAIANVPPA 373
G+ + R YE + P N + + LE +G +RAR +Y P
Sbjct: 643 GLP-----RTREIYEKAIESLPEQNMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDPR 697
Query: 374 EEKRYWQRY 382
+WQ +
Sbjct: 698 ITADFWQTW 706
Score = 142 (55.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 64/236 (27%), Positives = 104/236 (44%)
Query: 195 WLSYIKFELRYNEVERARQIYER-----FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYE 249
W+ + KF +VE AR ++ER +V+ + W ++A+ E++ + + A + +
Sbjct: 397 WVEFAKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCEWAEMELRQQQFEAALKLMQ 456
Query: 250 RAV----EKLA--DDEEAEQ--------LFVAFAEFEERCKETERARCIYKFALD-HIPK 294
RA K+A DD E Q ++ +A+ EE + + +Y+ +D I
Sbjct: 457 RATAMPKRKIAYYDDTETVQARLHRSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICT 516
Query: 295 GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR--LEES 352
+ Y F+ E Y E+A R ++ + K P YDIW Y+ LE
Sbjct: 517 PQIIINYGMFLE-EHNY-----FEEAY---RAYEKGISLFKWPNVYDIWNSYLTKFLERY 567
Query: 353 VGNK-ERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407
G K ERAR+++E+ + PP K Y YL YA EE + G VY
Sbjct: 568 GGTKLERARDLFEQCLDQCPPEHAK-----YFYLL--YAKLEE-EHGLARHAMSVY 615
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 69/290 (23%), Positives = 126/290 (43%)
Query: 128 WLKYAEVEMKNKFINHARN-VWDRAVTLLPRVDQLWYKYIHM--EEMLGNVAG------A 178
WL+Y ++ K K N+ N V++RA+ LP ++W+ Y+ +++ G +
Sbjct: 36 WLRY--IDHKAKAPNNGVNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEEV 93
Query: 179 RQIFER---WMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS---TWIKYA 232
FER +MH MP + W+ Y F ++ R R +++R ++ P W Y
Sbjct: 94 NSAFERALVFMHKMP--RIWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIWPLYL 151
Query: 233 KFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH- 291
+F + + A VY R ++ +D E +V + + +R E + + + +H
Sbjct: 152 QFVRRFEMPETALRVYRRYLKLFPEDTEE---YVDYLQEADRLDEAAQ-QLAHIVDNEHF 207
Query: 292 IPK-GRAE-DLYRKFV-AFEKQYGDREGIE-DAIV--GKRRFQYEDEVRKNPMNYDIWFD 345
+ K G++ L+ + K + DAI+ G RR Y D++ +W
Sbjct: 208 VSKHGKSNHQLWNELCDLISKNPHKVHSLNVDAIIRGGLRR--YTDQLGH------LWNS 259
Query: 346 YIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEEL 395
G +RAR++YE AI V + + ++ YA +EEL
Sbjct: 260 LADYYVRSGLFDRARDIYEEAIQTVTTVRD------FTQVFDEYAQFEEL 303
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 36/176 (20%), Positives = 79/176 (44%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK-- 137
+E+ I R ++ W++Y +++ N V+ERAL+ ++ +W Y K
Sbjct: 22 YEEEILRNAYSVKHWLRYID-HKAKAPNNGVNMVYERALKELPGSYKIWHNYLRTRRKQV 80
Query: 138 ------NKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP- 190
+ + ++RA+ + ++ ++W Y + R +F+R + +P
Sbjct: 81 RGKIPTDPMYEEVNSAFERALVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRALPI 140
Query: 191 DQQG--WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRA 244
Q G W Y++F R+ E A ++Y R+++ P+ + +Y + + +D A
Sbjct: 141 TQHGRIWPLYLQFVRRFEMPETALRVYRRYLKLFPEDTE--EYVDYLQEADRLDEA 194
Score = 75 (31.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE-VDYRNH-TLWLKYAEVEMKNKFINHARNVWDR 150
+W+ Y + SQ R R V++RAL + H +W Y + + + A V+ R
Sbjct: 110 IWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIWPLYLQFVRRFEMPETALRVYRR 169
Query: 151 AVTLLPRVDQLWYKYIHMEEMLGNVA 176
+ L P + + Y+ + L A
Sbjct: 170 YLKLFPEDTEEYVDYLQEADRLDEAA 195
Score = 47 (21.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 84 IRRVRWNTG-VWIKYAKWEESQKDFNRARSVWERALEV--DYRNHT-LWLKYAEVE 135
+RR G +W A + F+RAR ++E A++ R+ T ++ +YA+ E
Sbjct: 246 LRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQFE 301
>TAIR|locus:2128751 [details] [associations]
symbol:EMB2770 "EMBRYO DEFECTIVE 2770" species:3702
"Arabidopsis thaliana" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009409 "response to cold"
evidence=IMP] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 EMBL:CP002687 GO:GO:0009409
Gene3D:1.25.40.10 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0000398
EMBL:AL161496 EMBL:AF071527 GO:GO:0019252 HOGENOM:HOG000116247
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GO:GO:0009568 EMBL:AY059720 EMBL:AY142510 IPI:IPI00530735
PIR:E85043 RefSeq:NP_192252.1 UniGene:At.3947
ProteinModelPortal:Q9ZT71 SMR:Q9ZT71 STRING:Q9ZT71 PRIDE:Q9ZT71
EnsemblPlants:AT4G03430.1 GeneID:827925 KEGG:ath:AT4G03430
TAIR:At4g03430 InParanoid:Q9ZT71 PhylomeDB:Q9ZT71
ProtClustDB:CLSN2685941 Genevestigator:Q9ZT71 Uniprot:Q9ZT71
Length = 1029
Score = 223 (83.6 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 69/279 (24%), Positives = 120/279 (43%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153
W+ A + + AR+++ AL V ++WLK A++E + + +AVT
Sbjct: 628 WVADADECKKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLRKAVT 687
Query: 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERAR 212
+P+ + LW + + G+V AR I + +P+ + WL+ K E E ERAR
Sbjct: 688 YVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENKEPERAR 747
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ + + W+K A E ++G V+ R + +++ +L++ + E
Sbjct: 748 MLLAKARERGGTERVWMKSAIVERELGNVEEERRLLNEGLKQFPT---FFKLWLMLGQLE 804
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
ER K E+AR Y L H P L+ E++ G+ K R
Sbjct: 805 ERFKHLEQARKAYDTGLKHCP--HCIPLWLSLADLEEKVN---GLN-----KARAILTTA 854
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVP 371
+KNP ++W IR E NK A + +A+ + P
Sbjct: 855 RKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCP 893
Score = 154 (59.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 65/269 (24%), Positives = 118/269 (43%)
Query: 63 ITDSTE--LADYRLR-KRKEFED---LIRRVRWNTG---VWIKYAKWEESQKDFNRARSV 113
I +S E LA ++L + KE E L+ + R G VW+K A E + R +
Sbjct: 723 IPNSEEIWLAAFKLEFENKEPERARMLLAKARERGGTERVWMKSAIVERELGNVEEERRL 782
Query: 114 WERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173
L+ LWL ++E + K + AR +D + P LW +EE +
Sbjct: 783 LNEGLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGLKHCPHCIPLWLSLADLEEKVN 842
Query: 174 NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYA 232
+ AR I P + WL+ I+ ELR++ A + + +Q PK + I +A
Sbjct: 843 GLNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPK--SGILWA 900
Query: 233 KFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
+++M R + ++++ + + + +A A+ + K+ E+AR ++ A+
Sbjct: 901 A-DIEMAPRPRRKT---KSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARAWFERAVTVG 956
Query: 293 PKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
P D + F FE Q+G E ++ +
Sbjct: 957 PD--IGDFWALFYKFELQHGSDEDRKEVV 983
Score = 132 (51.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 59/247 (23%), Positives = 104/247 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW+K A E + R + L+ LWL ++E + K + AR +D +
Sbjct: 762 VWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGL 821
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERA 211
P LW +EE + + AR I P + WL+ I+ ELR++ A
Sbjct: 822 KHCPHCIPLWLSLADLEEKVNGLNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREA 881
Query: 212 RQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ + +Q PK + I +A +++M R + A++K D + + VA +
Sbjct: 882 EHLMSKALQDCPK--SGILWAA-DIEMAPRPRRKTKSIDAMKK-CDRDPHVTIAVAKLFW 937
Query: 272 EERCKETERA---RCI-------------YKFALDHIPKGRAEDLYRKFVAFEKQYGDR- 314
+++ E RA R + YKF L H +++ K VA E ++G++
Sbjct: 938 QDKKVEKARAWFERAVTVGPDIGDFWALFYKFELQHGSDEDRKEVVAKCVACEPKHGEKW 997
Query: 315 EGIEDAI 321
+ I A+
Sbjct: 998 QAISKAV 1004
Score = 131 (51.2 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 58/214 (27%), Positives = 95/214 (44%)
Query: 62 KITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD 121
K T E+ D R R R ++ L + N WI A+ EE AR +R E
Sbjct: 359 KRTTDEEIYD-RNRARLLYKSLTQSNPKNPNGWIAAARVEEVDGKIKAARFQIQRGCEEC 417
Query: 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI 181
+N +WL+ + N A+ V + V L+P +LW + +E +V ++
Sbjct: 418 PKNEDVWLEACR--LANP--EDAKGVIAKGVKLIPNSVKLWLEAAKLEH---DVENKSRV 470
Query: 182 FERWMHWMPDQ-QGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMG 239
+ + +PD + W + + EL NE E AR + R V+C P + W+ A+ E
Sbjct: 471 LRKGLEHIPDSVRLWKAVV--ELA-NE-EDARILLHRAVECCPLHLELWVALARLETYA- 525
Query: 240 EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEE 273
++ V +A EKL E A +++ A+ EE
Sbjct: 526 ---ESKKVLNKAREKLPK-EPA--IWITAAKLEE 553
Score = 122 (48.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 44/227 (19%), Positives = 92/227 (40%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+K A+ E+S ++ +A+ + LWL A+ + + AR + A
Sbjct: 661 IWLKAAQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAY 720
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
+P +++W +E AR + + ++ W+ E VE R
Sbjct: 721 AAIPNSEEIWLAAFKLEFENKEPERARMLLAKARERGGTERVWMKSAIVERELGNVEEER 780
Query: 213 QIYERFVQCHPKV-STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
++ ++ P W+ + E + +++AR Y+ ++ L+++ A+
Sbjct: 781 RLLNEGLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGLKHCP---HCIPLWLSLADL 837
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIE 318
EE+ +AR I A P G AE L+ + E ++ ++ E
Sbjct: 838 EEKVNGLNKARAILTTARKKNPGG-AE-LWLAAIRAELRHDNKREAE 882
Score = 67 (28.6 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 318 EDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKR 377
+D V K R +E V P D W + + E G+ E +EV + +A P EK
Sbjct: 938 QDKKVEKARAWFERAVTVGPDIGDFWALFYKFELQHGSDEDRKEVVAKCVACEPKHGEK- 996
Query: 378 YWQ 380
WQ
Sbjct: 997 -WQ 998
Score = 46 (21.3 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 68 ELADYRLR-KRKEFEDLI 84
E+ DY LR K+K+FE +
Sbjct: 259 EIGDYSLRNKKKKFESFV 276
>RGD|1307103 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA processing factor 6 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISO] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005682 "U5 snRNP" evidence=IEA;ISO] [GO:0006403 "RNA
localization" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA;ISO] [GO:0050681
"androgen receptor binding" evidence=IEA;ISO] [GO:0071001 "U4/U6
snRNP" evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 RGD:1307103 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW
EMBL:CH474066 EMBL:BC128779 IPI:IPI00368842 RefSeq:NP_001073234.1
UniGene:Rn.17062 ProteinModelPortal:A1A5S1 STRING:A1A5S1
Ensembl:ENSRNOT00000021722 GeneID:366276 KEGG:rno:366276
UCSC:RGD:1307103 InParanoid:A1A5S1 NextBio:689115
Genevestigator:A1A5S1 Uniprot:A1A5S1
Length = 941
Score = 223 (83.6 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 72/277 (25%), Positives = 120/277 (43%)
Query: 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169
AR+++ AL+V ++WL+ A E + + RAV P+ + LW +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 170 EMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228
+ G+V AR I P+ + WL+ +K E NE ERAR++ + P +
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVF 678
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
+K K E +G + A+ + E A+ E+ +L++ + EE+ + ERAR Y
Sbjct: 679 MKSVKLEWVLGNITAAQELCEEALRHY---EDFPKLWMMKGQIEEQGELMERAREAYNQG 735
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
L P + L+ E++ G AI+ K R KNP N +W + +R
Sbjct: 736 LKKCP--HSTPLWLLLSRLEEKIGQLTRAR-AILEKSRL-------KNPKNPGLWLESVR 785
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
LE G K A + +A+ P W ++L
Sbjct: 786 LEYRAGLKNIANTLMAKALQECP--NSGILWSEAVFL 820
Score = 162 (62.1 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 72/301 (23%), Positives = 128/301 (42%)
Query: 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWE-----RA-----LEVDYRNHTL 127
K + I +R N GV I +W + ++ +RA SV RA +E + R HT
Sbjct: 485 KIIDRAITSLRAN-GVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHT- 542
Query: 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187
W++ A+ + + + AR ++ A+ + P +W + + E+ G + +R +
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 602
Query: 188 WMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVST-WIKYAKFEMKMGEVDRAR 245
P + WL K + +V AR I Q +P W+ K E + E +RAR
Sbjct: 603 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 662
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFV 305
R + K ++F+ + E A+ + + AL H ED + K
Sbjct: 663 ----RLLAKARSSAPTARVFMKSVKLEWVLGNITAAQELCEEALRHY-----ED-FPKLW 712
Query: 306 AFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYER 365
+ Q + +G ++ + R Y ++K P + +W RLEE +G RAR + E+
Sbjct: 713 MMKGQI-EEQG---ELMERAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEK 768
Query: 366 A 366
+
Sbjct: 769 S 769
Score = 149 (57.5 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 75/326 (23%), Positives = 138/326 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ E + AR V +A E + +W+ A++E N + DRA+
Sbjct: 436 LWLALARLET----YENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAI 491
Query: 153 TLLPR--VD---QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----WLSYIKFEL 203
T L V+ + W + + G+VA + + + +++ W+ +
Sbjct: 492 TSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCV 551
Query: 204 RYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
+N +E AR IY +Q P K S W++ A FE G + + +RAV A +AE
Sbjct: 552 AHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV---AHCPKAE 608
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
L++ A+ + + AR I A P +E+++ V E + + E +
Sbjct: 609 VLWLMGAKSKWLAGDVPAARSILALAFQANPN--SEEIWLAAVKLESENNEYERARRLLA 666
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ R + ++ ++LE +GN A+E+ E A+ R+++ +
Sbjct: 667 ---------KARSSAPTARVFMKSVKLEWVLGNITAAQELCEEAL---------RHYEDF 708
Query: 383 IYLWINYALYEELDAGD-MERTRDVY 407
LW+ EE G+ MER R+ Y
Sbjct: 709 PKLWMMKGQIEE--QGELMERAREAY 732
Score = 139 (54.0 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 65/317 (20%), Positives = 139/317 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW++ A +E++ ++ +RA+ + LWL A+ + + AR++ A
Sbjct: 576 VWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAF 635
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P +++W + +E AR++ + P + ++ +K E + A+
Sbjct: 636 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNITAAQ 695
Query: 213 QIYE---RFVQCHPKVSTWIKYAKFEMKMGEV-DRARNVYERAVEKLADDEEAEQLFVAF 268
++ E R + PK+ W+ + E + GE+ +RAR Y + ++K + L++
Sbjct: 696 ELCEEALRHYEDFPKL--WMMKGQIE-EQGELMERAREAYNQGLKKCP---HSTPLWLLL 749
Query: 269 AEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ 328
+ EE+ + RAR I + + PK L+ + V E + G + I + ++ K
Sbjct: 750 SRLEEKIGQLTRARAILEKSRLKNPKNPG--LWLESVRLEYRAG-LKNIANTLMAKA--- 803
Query: 329 YEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI--ANVPPAEEKRYW-QRYIYL 385
+++ P + +W + + LE K ++ + ++ +V A K +W +R I
Sbjct: 804 ----LQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITK 859
Query: 386 ---WINYALYEELDAGD 399
W + + + D GD
Sbjct: 860 AREWFHRTVKIDSDLGD 876
Score = 130 (50.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 41/192 (21%), Positives = 86/192 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119
K +I + EL + R R+ + +++ +T +W+ ++ EE RAR++ E++
Sbjct: 715 KGQIEEQGELME---RAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRL 771
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179
+ +N LWL+ +E + N A + +A+ P LW + + +E +
Sbjct: 772 KNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSV 831
Query: 180 QIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKM 238
++ H D L+ K ++ +AR+ + R V+ + W + KFE++
Sbjct: 832 DALKKCEH---DPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888
Query: 239 GEVDRARNVYER 250
G ++ V +R
Sbjct: 889 GTEEQQEEVRKR 900
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 58/236 (24%), Positives = 97/236 (41%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHT-LWLKYAEVEMKNKFINHARNVWDRA 151
V++K K E + A+ + E AL Y + LW+ ++E + + + AR +++
Sbjct: 677 VFMKSVKLEWVLGNITAAQELCEEALR-HYEDFPKLWMMKGQIEEQGELMERAREAYNQG 735
Query: 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVER 210
+ P LW +EE +G + AR I E+ P G WL ++ E R
Sbjct: 736 LKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNI 795
Query: 211 ARQIYERFVQ-CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
A + + +Q C W + E + + ++V A++K D L VA
Sbjct: 796 ANTLMAKALQECPNSGILWSEAVFLEARPQR--KTKSV--DALKKCEHDPHV-LLAVAKL 850
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325
+ ER K T+ ++ G D + F FE Q+G E E+ V KR
Sbjct: 851 FWSER-KITKAREWFHRTVKIDSDLG---DAWAFFYKFELQHGTEEQQEE--VRKR 900
Score = 41 (19.5 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 341 DIWFDYIRLEESVGNKERAREVYERAIANVPP 372
D W + + E G +E+ EV +R N P
Sbjct: 876 DAWAFFYKFELQHGTEEQQEEVRKRC-ENAEP 906
>UNIPROTKB|E2RPW8 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 Gene3D:1.25.40.10 GO:GO:0000398
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 GeneTree:ENSGT00550000075016 EMBL:AAEX03014173
EMBL:AAEX03014174 RefSeq:XP_534481.3 Ensembl:ENSCAFT00000020914
GeneID:477289 KEGG:cfa:477289 Uniprot:E2RPW8
Length = 941
Score = 222 (83.2 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 73/277 (26%), Positives = 121/277 (43%)
Query: 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169
AR+++ AL+V ++WL+ A E + + RAV P+ + LW +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 170 EMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228
+ G+V AR I P+ + WL+ +K E NE ERAR++ + P +
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVF 678
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
+K K E +G + A+ + E A+ E+ +L++ + EE+ + ERAR Y
Sbjct: 679 MKSVKLEWVLGNIAAAQELCEEALRHY---EDFPKLWMMKGQIEEQEELMERAREAYNQG 735
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
L P + L+ E++ G AI+ K R KNP N +W + +R
Sbjct: 736 LKKCP--HSTPLWLLLSRLEEKVGQLTRAR-AILEKSRL-------KNPKNPGLWLESVR 785
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
LE G K A + +A+ P + W I+L
Sbjct: 786 LEYRAGLKNIANTLMAKALQECPNSGV--LWSEAIFL 820
Score = 148 (57.2 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 74/325 (22%), Positives = 137/325 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ E + AR V +A E + +W+ A++E N + DRA+
Sbjct: 436 LWLALARLET----YENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAI 491
Query: 153 TLLPR--VD---QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----WLSYIKFEL 203
T L V+ + W + + G+VA + + + +++ W+ +
Sbjct: 492 TSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCV 551
Query: 204 RYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
+N +E AR IY +Q P K S W++ A FE G + + +RAV A +AE
Sbjct: 552 AHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV---AHCPKAE 608
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
L++ A+ + + AR I A P +E+++ V E + + E +
Sbjct: 609 VLWLMGAKSKWLAGDVPAARSILALAFQANPN--SEEIWLAAVKLESENNEYERARRLLA 666
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ R + ++ ++LE +GN A+E+ E A+ R+++ +
Sbjct: 667 ---------KARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEAL---------RHYEDF 708
Query: 383 IYLWINYALYEELDAGDMERTRDVY 407
LW+ EE + MER R+ Y
Sbjct: 709 PKLWMMKGQIEEQEEL-MERAREAY 732
Score = 138 (53.6 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 64/316 (20%), Positives = 137/316 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW++ A +E++ ++ +RA+ + LWL A+ + + AR++ A
Sbjct: 576 VWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAF 635
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P +++W + +E AR++ + P + ++ +K E + A+
Sbjct: 636 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQ 695
Query: 213 QIYE---RFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
++ E R + PK+ W+ + E + ++RAR Y + ++K + L++ +
Sbjct: 696 ELCEEALRHYEDFPKL--WMMKGQIEEQEELMERAREAYNQGLKKCP---HSTPLWLLLS 750
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
EE+ + RAR I + + PK L+ + V E + G + I + ++ K
Sbjct: 751 RLEEKVGQLTRARAILEKSRLKNPKNPG--LWLESVRLEYRAG-LKNIANTLMAKA---- 803
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI--ANVPPAEEKRYW-QRYIYL- 385
+++ P + +W + I LE K ++ + ++ +V A K +W +R I
Sbjct: 804 ---LQECPNSGVLWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKA 860
Query: 386 --WINYALYEELDAGD 399
W + + + D GD
Sbjct: 861 REWFHRTVKIDSDLGD 876
Score = 133 (51.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 42/192 (21%), Positives = 85/192 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119
K +I + EL + R R+ + +++ +T +W+ ++ EE RAR++ E++
Sbjct: 715 KGQIEEQEELME---RAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRL 771
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179
+ +N LWL+ +E + N A + +A+ P LW + I +E +
Sbjct: 772 KNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSV 831
Query: 180 QIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKM 238
++ H D L+ K ++ +AR+ + R V+ + W + KFE++
Sbjct: 832 DALKKCEH---DPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888
Query: 239 GEVDRARNVYER 250
G ++ V R
Sbjct: 889 GTEEQREEVRRR 900
>MGI|MGI:1922946 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA splicing factor 6 homolog
(yeast)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006403 "RNA localization" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0071001 "U4/U6 snRNP" evidence=ISO] [GO:0071013 "catalytic step
2 spliceosome" evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 Pfam:PF13181 SMART:SM00386 MGI:MGI:1922946
GO:GO:0005634 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0050681 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 EMBL:CH466626 GO:GO:0006403 ChiTaRS:PRPF6
GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 EMBL:BC005801
EMBL:BC014869 EMBL:BC023691 EMBL:BC025030 EMBL:AK011639
EMBL:AK145461 EMBL:AK081998 EMBL:AL844529 IPI:IPI00130409
IPI:IPI00229813 RefSeq:NP_598462.1 UniGene:Mm.292001
ProteinModelPortal:Q91YR7 SMR:Q91YR7 STRING:Q91YR7
PhosphoSite:Q91YR7 PaxDb:Q91YR7 PRIDE:Q91YR7
Ensembl:ENSMUST00000002529 Ensembl:ENSMUST00000136481 GeneID:68879
KEGG:mmu:68879 UCSC:uc008omy.1 InParanoid:Q3ULJ7 NextBio:328105
Bgee:Q91YR7 CleanEx:MM_PRPF6 Genevestigator:Q91YR7
GermOnline:ENSMUSG00000002455 Uniprot:Q91YR7
Length = 941
Score = 221 (82.9 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 71/277 (25%), Positives = 120/277 (43%)
Query: 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169
AR+++ AL+V ++WL+ A E + + RAV P+ + LW +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 170 EMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228
+ G+V AR I P+ + WL+ +K E NE ERAR++ + P +
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVF 678
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
+K K E +G + A+ + E A+ E+ +L++ + EE+ + E+AR Y
Sbjct: 679 MKSVKLEWVLGNISAAQELCEEALRHY---EDFPKLWMMKGQIEEQGELMEKAREAYNQG 735
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
L P + L+ E++ G AI+ K R KNP N +W + +R
Sbjct: 736 LKKCP--HSTPLWLLLSRLEEKIGQLTRAR-AILEKSRL-------KNPKNPGLWLESVR 785
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
LE G K A + +A+ P W ++L
Sbjct: 786 LEYRAGLKNIANTLMAKALQECP--NSGILWSEAVFL 820
Score = 166 (63.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 73/301 (24%), Positives = 128/301 (42%)
Query: 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWE-----RA-----LEVDYRNHTL 127
K + I +R N GV I +W + ++ +RA SV RA +E + R HT
Sbjct: 485 KIIDRAITSLRAN-GVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHT- 542
Query: 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187
W++ A+ + + + AR ++ A+ + P +W + + E+ G + +R +
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 602
Query: 188 WMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVST-WIKYAKFEMKMGEVDRAR 245
P + WL K + +V AR I Q +P W+ K E + E +RAR
Sbjct: 603 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 662
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFV 305
R + K ++F+ + E A+ + + AL H ED + K
Sbjct: 663 ----RLLAKARSSAPTARVFMKSVKLEWVLGNISAAQELCEEALRHY-----ED-FPKLW 712
Query: 306 AFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYER 365
+ Q + +G ++ K R Y ++K P + +W RLEE +G RAR + E+
Sbjct: 713 MMKGQI-EEQG---ELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEK 768
Query: 366 A 366
+
Sbjct: 769 S 769
Score = 147 (56.8 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 74/326 (22%), Positives = 138/326 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ E + AR V +A E + +W+ A++E N + DRA+
Sbjct: 436 LWLALARLET----YENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAI 491
Query: 153 TLLPR--VD---QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----WLSYIKFEL 203
T L V+ + W + + G+VA + + + +++ W+ +
Sbjct: 492 TSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCV 551
Query: 204 RYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
+N +E AR IY +Q P K S W++ A FE G + + +RAV A +AE
Sbjct: 552 AHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV---AHCPKAE 608
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
L++ A+ + + AR I A P +E+++ V E + + E +
Sbjct: 609 VLWLMGAKSKWLAGDVPAARSILALAFQANPN--SEEIWLAAVKLESENNEYERARRLLA 666
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ R + ++ ++LE +GN A+E+ E A+ R+++ +
Sbjct: 667 ---------KARSSAPTARVFMKSVKLEWVLGNISAAQELCEEAL---------RHYEDF 708
Query: 383 IYLWINYALYEELDAGD-MERTRDVY 407
LW+ EE G+ ME+ R+ Y
Sbjct: 709 PKLWMMKGQIEE--QGELMEKAREAY 732
Score = 137 (53.3 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 64/317 (20%), Positives = 139/317 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW++ A +E++ ++ +RA+ + LWL A+ + + AR++ A
Sbjct: 576 VWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAF 635
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P +++W + +E AR++ + P + ++ +K E + A+
Sbjct: 636 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNISAAQ 695
Query: 213 QIYE---RFVQCHPKVSTWIKYAKFEMKMGEV-DRARNVYERAVEKLADDEEAEQLFVAF 268
++ E R + PK+ W+ + E + GE+ ++AR Y + ++K + L++
Sbjct: 696 ELCEEALRHYEDFPKL--WMMKGQIE-EQGELMEKAREAYNQGLKKCP---HSTPLWLLL 749
Query: 269 AEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ 328
+ EE+ + RAR I + + PK L+ + V E + G + I + ++ K
Sbjct: 750 SRLEEKIGQLTRARAILEKSRLKNPKNPG--LWLESVRLEYRAG-LKNIANTLMAKA--- 803
Query: 329 YEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI--ANVPPAEEKRYW-QRYIYL 385
+++ P + +W + + LE K ++ + ++ +V A K +W +R I
Sbjct: 804 ----LQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITK 859
Query: 386 ---WINYALYEELDAGD 399
W + + + D GD
Sbjct: 860 AREWFHRTVKIDSDLGD 876
Score = 127 (49.8 bits), Expect = 0.00013, P = 0.00013
Identities = 40/192 (20%), Positives = 86/192 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119
K +I + EL + + R+ + +++ +T +W+ ++ EE RAR++ E++
Sbjct: 715 KGQIEEQGELME---KAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRL 771
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179
+ +N LWL+ +E + N A + +A+ P LW + + +E +
Sbjct: 772 KNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSV 831
Query: 180 QIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKM 238
++ H D L+ K ++ +AR+ + R V+ + W + KFE++
Sbjct: 832 DALKKCEH---DPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888
Query: 239 GEVDRARNVYER 250
G ++ V +R
Sbjct: 889 GTEEQQEEVRKR 900
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 58/236 (24%), Positives = 98/236 (41%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHT-LWLKYAEVEMKNKFINHARNVWDRA 151
V++K K E + + A+ + E AL Y + LW+ ++E + + + AR +++
Sbjct: 677 VFMKSVKLEWVLGNISAAQELCEEALR-HYEDFPKLWMMKGQIEEQGELMEKAREAYNQG 735
Query: 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVER 210
+ P LW +EE +G + AR I E+ P G WL ++ E R
Sbjct: 736 LKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNI 795
Query: 211 ARQIYERFVQ-CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
A + + +Q C W + E + + ++V A++K D L VA
Sbjct: 796 ANTLMAKALQECPNSGILWSEAVFLEARPQR--KTKSV--DALKKCEHDPHV-LLAVAKL 850
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325
+ ER K T+ ++ G D + F FE Q+G E E+ V KR
Sbjct: 851 FWSER-KITKAREWFHRTVKIDSDLG---DAWAFFYKFELQHGTEEQQEE--VRKR 900
Score = 41 (19.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 341 DIWFDYIRLEESVGNKERAREVYERAIANVPP 372
D W + + E G +E+ EV +R N P
Sbjct: 876 DAWAFFYKFELQHGTEEQQEEVRKRC-ENAEP 906
>UNIPROTKB|Q2KJJ0 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071001 "U4/U6
snRNP" evidence=IEA] [GO:0050681 "androgen receptor binding"
evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] [GO:0006403 "RNA
localization" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
EMBL:AAFC03042419 EMBL:BC105318 IPI:IPI00702400
RefSeq:NP_001039840.1 UniGene:Bt.40556 ProteinModelPortal:Q2KJJ0
STRING:Q2KJJ0 Ensembl:ENSBTAT00000015480 GeneID:534228
KEGG:bta:534228 CTD:24148 GeneTree:ENSGT00550000075016
HOVERGEN:HBG023330 InParanoid:Q2KJJ0 OrthoDB:EOG4FTVZW
NextBio:20876316 ArrayExpress:Q2KJJ0 Uniprot:Q2KJJ0
Length = 941
Score = 217 (81.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 72/277 (25%), Positives = 122/277 (44%)
Query: 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169
AR+++ AL+V ++WL+ A E + + RAV P+ + LW +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 170 EMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228
+ G+V AR I P+ + WL+ +K E NE ERAR++ + P +
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVF 678
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
+K K E +G + A+ + E A++ E+ +L++ + EE+ + E+AR Y
Sbjct: 679 MKSVKLEWVLGNLVAAQELCEEALKHY---EDFPKLWMMKGQIEEQEELVEKAREAYNQG 735
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
L P + L+ E++ G AI+ K R KNP N +W + +R
Sbjct: 736 LKKCP--HSTPLWLLLSRLEEKVGQLTRAR-AILEKSRL-------KNPKNPGLWLESVR 785
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
LE G K A + +A+ P + W I+L
Sbjct: 786 LEYRAGLKNIASTLMAKALQECPNSGV--LWSEAIFL 820
Score = 138 (53.6 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 71/325 (21%), Positives = 137/325 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ E + AR V +A E + +W+ A++E N + DRA+
Sbjct: 436 LWLALARLET----YENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAI 491
Query: 153 TLLPR--VD---QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----WLSYIKFEL 203
T L V+ + W + + G+VA + + + +++ W+ +
Sbjct: 492 TSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCV 551
Query: 204 RYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
+N +E AR IY +Q P K S W++ A FE G + + +RAV A +AE
Sbjct: 552 AHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV---AHCPKAE 608
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
L++ A+ + + AR I A P +E+++ V E + + E +
Sbjct: 609 VLWLMGAKSKWLAGDVPAARSILALAFQANPN--SEEIWLAAVKLESENNEYERARRLLA 666
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ R + ++ ++LE +GN A+E+ E A+ ++++ +
Sbjct: 667 ---------KARSSAPTARVFMKSVKLEWVLGNLVAAQELCEEAL---------KHYEDF 708
Query: 383 IYLWINYALYEELDAGDMERTRDVY 407
LW+ EE + +E+ R+ Y
Sbjct: 709 PKLWMMKGQIEEQEEL-VEKAREAY 732
Score = 132 (51.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 63/316 (19%), Positives = 137/316 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW++ A +E++ ++ +RA+ + LWL A+ + + AR++ A
Sbjct: 576 VWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAF 635
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P +++W + +E AR++ + P + ++ +K E + A+
Sbjct: 636 QANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNLVAAQ 695
Query: 213 QIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
++ E ++ + PK+ W+ + E + V++AR Y + ++K + L++ +
Sbjct: 696 ELCEEALKHYEDFPKL--WMMKGQIEEQEELVEKAREAYNQGLKKCP---HSTPLWLLLS 750
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
EE+ + RAR I + + PK L+ + V E + G + I ++ K
Sbjct: 751 RLEEKVGQLTRARAILEKSRLKNPKNPG--LWLESVRLEYRAG-LKNIASTLMAKA---- 803
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI--ANVPPAEEKRYW-QRYIYL- 385
+++ P + +W + I LE K ++ + ++ +V A K +W +R I
Sbjct: 804 ---LQECPNSGVLWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKA 860
Query: 386 --WINYALYEELDAGD 399
W + + + D GD
Sbjct: 861 REWFHRTVKIDSDLGD 876
Score = 130 (50.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 41/192 (21%), Positives = 85/192 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119
K +I + EL + + R+ + +++ +T +W+ ++ EE RAR++ E++
Sbjct: 715 KGQIEEQEELVE---KAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRL 771
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179
+ +N LWL+ +E + N A + +A+ P LW + I +E +
Sbjct: 772 KNPKNPGLWLESVRLEYRAGLKNIASTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSV 831
Query: 180 QIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKM 238
++ H D L+ K ++ +AR+ + R V+ + W + KFE++
Sbjct: 832 DALKKCEH---DPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888
Query: 239 GEVDRARNVYER 250
G ++ V R
Sbjct: 889 GTEEQREEVRRR 900
>WB|WBGene00013343 [details] [associations]
symbol:prp-6 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040039 "inductive cell migration" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0018996 "molting cycle, collagen and cuticulin-based cuticle"
evidence=IMP] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0018996
GO:GO:0000003 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0040039
GO:GO:0040015 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
EMBL:AL132898 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 RefSeq:NP_507525.1
ProteinModelPortal:Q9GRZ2 SMR:Q9GRZ2 STRING:Q9GRZ2 PaxDb:Q9GRZ2
EnsemblMetazoa:Y59A8B.6.1 EnsemblMetazoa:Y59A8B.6.2 GeneID:180180
KEGG:cel:CELE_Y59A8B.6 UCSC:Y59A8B.6.1 CTD:180180 WormBase:Y59A8B.6
InParanoid:Q9GRZ2 NextBio:908332 Uniprot:Q9GRZ2
Length = 968
Score = 216 (81.1 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 69/278 (24%), Positives = 124/278 (44%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153
W+ A+ E ++ F R+V+ AL+ R ++W E ++ ++ + +A
Sbjct: 569 WLADAENFEKEEAFTCVRTVYAIALKEFSRKRSIWDAAIHFEREHGSLDEHEAILLKACE 628
Query: 154 LLPRVDQLWYKYIHMEEMLGNVAGARQI----FERWMHWMPDQQGWLSYIKFELRYNEVE 209
+P V+ W + + V AR FE+ H ++ WL+ K E+ ++ +
Sbjct: 629 TVPEVEDYWLMLAKLRFVNKRVGEARDTLMSAFEK--HGHQSEKIWLAATKIEIETDQFD 686
Query: 210 RARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
AR ++ + P W+K A FE +G V+ A+ + E ++K DD ++++
Sbjct: 687 TARGLFGKARAKAPSARVWMKNAHFEWCLGNVEEAKRLCEECIQKY-DD--FHKIYLVLG 743
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
+ E+ + AR Y + P G L+ V E++ G IV K R
Sbjct: 744 QVLEQMNDVHGARLAYTQGIRKCP-G-VIPLWILLVRLEEKAGQ-------IV-KARVDL 793
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E +NP N D+W + +R E+ VG E A+E RA+
Sbjct: 794 EKARLRNPKNDDLWLESVRFEQRVGCPEMAKERMSRAL 831
Score = 152 (58.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 60/255 (23%), Positives = 113/255 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW+K A +E + A+ + E ++ H ++L +V + ++ AR + + +
Sbjct: 704 VWMKNAHFEWCLGNVEEAKRLCEECIQKYDDFHKIYLVLGQVLEQMNDVHGARLAYTQGI 763
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERA 211
P V LW + +EE G + AR E+ P WL ++FE R E A
Sbjct: 764 RKCPGVIPLWILLVRLEEKAGQIVKARVDLEKARLRNPKNDDLWLESVRFEQRVGCPEMA 823
Query: 212 RQIYERFVQ-CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE 270
++ R +Q C W + E G RA+++ A++K E + +A A
Sbjct: 824 KERMSRALQECEGSGKLWAEAIWMEGPHGR--RAKSI--DALKKC---EHNPHVLIAAAR 876
Query: 271 FEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG---DREGI-EDAIVGKRR 326
++ ++AR + A++ P D + F+AFE+ +G DR+ + + + + R
Sbjct: 877 LFWSERKIKKAREWFVRAVNLDPDNG--DAFANFLAFEQIHGKEEDRKSVFKKCVTSEPR 934
Query: 327 F-QYEDEVRKNPMNY 340
+ V K+P+N+
Sbjct: 935 YGDLWQSVSKDPINW 949
Score = 143 (55.4 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 64/298 (21%), Positives = 115/298 (38%)
Query: 84 IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKF 140
+ +V N W+K A E K +++ + + D T WL AE K +
Sbjct: 522 VNQVEINRDQWLKDAVDAEMAKCPITCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEA 581
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYI 199
R V+ A+ R +W IH E G++ I + +P+ + WL
Sbjct: 582 FTCVRTVYAIALKEFSRKRSIWDAAIHFEREHGSLDEHEAILLKACETVPEVEDYWLMLA 641
Query: 200 KFELRYNEVERARQ-IYERFVQC-HPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257
K V AR + F + H W+ K E++ + D AR ++ +A K
Sbjct: 642 KLRFVNKRVGEARDTLMSAFEKHGHQSEKIWLAATKIEIETDQFDTARGLFGKARAKAP- 700
Query: 258 DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGI 317
+ ++++ A FE E A+ + + + + +D ++ ++ + +
Sbjct: 701 ---SARVWMKNAHFEWCLGNVEEAKRLCEECIQ-----KYDDFHKIYLVLGQVLEQMNDV 752
Query: 318 EDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375
A R Y +RK P +W +RLEE G +AR E+A P ++
Sbjct: 753 HGA-----RLAYTQGIRKCPGVIPLWILLVRLEEKAGQIVKARVDLEKARLRNPKNDD 805
>UNIPROTKB|J9PAI6 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459
Ensembl:ENSCAFT00000044264 Uniprot:J9PAI6
Length = 799
Score = 211 (79.3 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 66/268 (24%), Positives = 122/268 (45%)
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
E + RV + VW A EES F ++V++R L++ + + YA ++K+
Sbjct: 474 EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY 533
Query: 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAG-----ARQIFERWMHWMPDQQ 193
+ ++R ++L P V +W Y+ + + G AR +FE+ + P +
Sbjct: 534 FEESFKAYERGISLFKWPNVSDIWSTYL--TKFIARYGGRKLERARDLFEQALDGCPPKY 591
Query: 194 G---WLSYIKFELRYNEVERARQIYERFVQC-HP--KVSTWIKYAKFEMKMGEVDRARNV 247
+L Y + E + A +YER + P + + Y K ++ V R +
Sbjct: 592 AKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGI 651
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y++A+E L+D E A ++ + FA+ E R E +RAR IY F ++ + F
Sbjct: 652 YQKAIEVLSD-EHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDF 710
Query: 308 EKQYGDREGIEDAIVGKRRFQ--YEDEV 333
E ++G+ + I + + +R Q Y +V
Sbjct: 711 EVRHGNEDTIREMLRIRRSVQATYNTQV 738
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 48/191 (25%), Positives = 93/191 (48%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EM 136
+E+ I R +++ W++Y ++++ R ++ERAL++ ++ LW +Y + ++
Sbjct: 24 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQV 82
Query: 137 KNKFINH-----ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
K++ + N +RA + ++ +LW Y G V R+ F+R + +P
Sbjct: 83 KHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPI 142
Query: 192 QQG---WLSYIKFELRYNEV-ERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV-DRAR 245
Q W Y++F LR + + E A + Y RF++ P+ +I+Y K ++ E R
Sbjct: 143 TQHSRIWPLYLRF-LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLA 201
Query: 246 NVY--ERAVEK 254
V ER V K
Sbjct: 202 TVVNDERFVSK 212
Score = 141 (54.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 49/230 (21%), Positives = 103/230 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F + E + + YER
Sbjct: 485 KVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERG 544
Query: 219 VQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P VS W Y KF + G +++RAR+++E+A++ + A+ L++ +A+ E
Sbjct: 545 ISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDG-CPPKYAKTLYLLYAQLE 603
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y+ A + + D++ ++ K+ + G+ + +Q E
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYI---KRAAEIYGVTHT---RGIYQKAIE 657
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + ++ + +E +G +RAR +Y P +WQ +
Sbjct: 658 VLSDEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTW 707
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 59/285 (20%), Positives = 127/285 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK+ E + AR + E+A +V ++ ++W + E+E++++ N +
Sbjct: 397 LWVAFAKFYEDNGQLDDARIILEKATKVSFKQVDDLASVWCECGELELRHE------N-Y 449
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
D+A+ LL + L + E G+ ++++ W L+ ++ L
Sbjct: 450 DQALRLLRKATALPAR--RAEYFDGSEPVQNRVYKSLKVW-----SMLADLEESL--GTF 500
Query: 209 ERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +Y+R + P++ I YA F + + + YER + ++
Sbjct: 501 QSTKAVYDRILDLRIATPQIV--INYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558
Query: 266 VAFAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAIV 322
+F R ++ ERAR +++ ALD P A+ LY + E+++G R + V
Sbjct: 559 TYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMA---V 615
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
+R + + ++ YD++ YI+ + R +Y++AI
Sbjct: 616 YERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRGIYQKAI 656
Score = 121 (47.7 bits), Expect = 0.00048, P = 0.00048
Identities = 58/257 (22%), Positives = 107/257 (41%)
Query: 162 WYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEV-----ERAR 212
W +YI ++ Q++ER + +P + W Y+K ++++ V E
Sbjct: 38 WLRYIEFKQGAPKPR-LNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 213 QIYER-FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ER FV H W+ Y +F M G V R ++RA+ L + + +++ + F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHS-RIWPLYLRF 155
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E A Y+ L P+ AE+ Y +++ + + +V RF
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPES-AEE-YIEYLKSSDRLDEAAQRLATVVNDERFV--S 211
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYAL 391
+ K+ NY +W + L N ++ + + AI R+ + LW + A
Sbjct: 212 KAGKS--NYQLWHELCDLISQ--NPDKVQSLNVDAIIR---GGLTRFTDQLGKLWCSLAD 264
Query: 392 YEELDAGDMERTRDVYQ 408
Y + +G E+ RDVY+
Sbjct: 265 YY-IRSGHFEKARDVYE 280
>ZFIN|ZDB-GENE-040426-685 [details] [associations]
symbol:xab2 "XPA binding protein 2" species:7955
"Danio rerio" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-685 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
HOVERGEN:HBG024066 EMBL:BC056771 IPI:IPI00614939 UniGene:Dr.12501
ProteinModelPortal:Q6PGZ8 STRING:Q6PGZ8 InParanoid:Q6PGZ8
ArrayExpress:Q6PGZ8 Uniprot:Q6PGZ8
Length = 851
Score = 211 (79.3 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 68/275 (24%), Positives = 123/275 (44%)
Query: 75 RKRKEF---EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKY 131
RK + F E + RV + VW A EES F ++V++R +++ + + Y
Sbjct: 460 RKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINY 519
Query: 132 AEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HMEEMLGN-VAGARQIFERWM 186
A ++ + + ++R + L P V +W Y+ ++ G + AR +FE+ +
Sbjct: 520 AMFLEEHNYFEESFKAYERGIALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQAL 579
Query: 187 HWMPDQQG---WLSYIKFELRYNEVERARQIYERF---VQCHPKVSTWIKYAKFEMKMGE 240
P + +L Y K E Y A +YER V+ + + Y K ++
Sbjct: 580 DGCPAKYAKTIYLLYAKLEEEYGLARHAMAVYERATAAVEAEERHQMFNIYIKRAAEIYG 639
Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDL 300
V R +Y++A+E L D E A + + FA+ E + E +RAR IY +
Sbjct: 640 VTHTRAIYQKAIEVLPD-EHARDMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHF 698
Query: 301 YRKFVAFEKQYGDREGIEDAIVGKRRFQ--YEDEV 333
++ + FE ++G+ + I + + KR Q Y +V
Sbjct: 699 WQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQV 733
Score = 165 (63.1 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 66/296 (22%), Positives = 132/296 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK+ E + + AR+++E+A +V+Y+ +W +Y E+E++++ + A +
Sbjct: 392 LWVSFAKFYEDNEQIDDARTIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYDQASRIL 451
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
+A + R + Y E + N ++++ W L+ ++ L
Sbjct: 452 RKATAIPARKAE----YFDSSEPVQN-----RVYKSLKVW-----SMLADLEESL--GTF 495
Query: 209 ERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +Y+R + P++ I YA F + + + YER + L ++
Sbjct: 496 QSTKAVYDRIIDLRIATPQII--INYAMFLEEHNYFEESFKAYERGIA-LFKWPNVHDIW 552
Query: 266 VAF-AEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAI 321
+ +F +R K+ ERAR +++ ALD P A+ +Y + E++YG R + A+
Sbjct: 553 NTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEEYGLARHAM--AV 610
Query: 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKR 377
+ E E R N YI+ + R +Y++AI V P E R
Sbjct: 611 YERATAAVEAEERHQMFNI-----YIKRAAEIYGVTHTRAIYQKAI-EVLPDEHAR 660
Score = 148 (57.2 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 51/230 (22%), Positives = 104/230 (45%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F +N E + + YER
Sbjct: 480 KVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERG 539
Query: 219 VQCH--PKV-STWIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P V W Y KF + G +++RAR+++E+A++ + A+ +++ +A+ E
Sbjct: 540 IALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDG-CPAKYAKTIYLLYAKLE 598
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y+ A + AE+ ++ F + K+ + G+ + +Q E
Sbjct: 599 EEYGLARHAMAVYERATAAV---EAEERHQMFNIYIKRAAEIYGVTHT---RAIYQKAIE 652
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + D+ + +E +G +RAR +Y P +WQ +
Sbjct: 653 VLPDEHARDMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTW 702
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 72/303 (23%), Positives = 136/303 (44%)
Query: 128 WLKYAEVEMKNKFINHARN-VWDRAVTLLPRVDQLWYKYIH--MEEMLGNVA---GARQI 181
W++Y +E K N +++RA+ LP +LWY Y+ +++ G G ++
Sbjct: 33 WMRY--IEHKQSAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCITDPGYEEV 90
Query: 182 ---FER---WMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQC-----HPKVSTWIK 230
ER +MH MP + W+ Y +F + ++ R+R+ ++R ++ HP++ W
Sbjct: 91 NNCHERALVFMHKMP--RIWIDYCQFMVSQCKITRSRRTFDRALRALPITQHPRI--WPL 146
Query: 231 YAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALD 290
Y +F + + A VY R + KL+ E AE+ ++ + R E +
Sbjct: 147 YLRFARNLPLPETAIRVYRRYL-KLSP-ENAEE-YIDYLRSVGRLDEAALRLAAVVNDEN 203
Query: 291 HIPK-GRAE-DLYRKFVAFEKQYGDR-EGIE-DAIVGKRRFQYEDEVRKNPMNYDIWFDY 346
+ K G++ L+ + Q D+ + AI+ ++ D++ K +W
Sbjct: 204 FVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIRGGLTRFTDQLGK------LWCSM 257
Query: 347 IRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEE-LDAGDMERTRD 405
G+ E+AR+VYE AI V + + ++ +YA +EE + A ME T +
Sbjct: 258 ADYYIRSGHFEKARDVYEEAILTVVTVRD------FTQVFDSYAQFEESMIAAKMETTSE 311
Query: 406 VYQ 408
+ Q
Sbjct: 312 LGQ 314
Score = 128 (50.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 40/177 (22%), Positives = 82/177 (46%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEES-QKDFNRARSVWERALEVDYRNHTLWLKYAEV---E 135
+E+ I R ++ W++Y + ++S QK ++ERAL+ ++ LW Y +
Sbjct: 19 YEEEIIRNPYSVKCWMRYIEHKQSAQKSV--LNMIYERALKELPGSYKLWYNYLRERRKQ 76
Query: 136 MKNKFIN-----HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP 190
+K K I N +RA+ + ++ ++W Y + +R+ F+R + +P
Sbjct: 77 VKGKCITDPGYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCKITRSRRTFDRALRALP 136
Query: 191 DQQG---WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRA 244
Q W Y++F E A ++Y R+++ P+ + +Y + +G +D A
Sbjct: 137 ITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAE--EYIDYLRSVGRLDEA 191
Score = 109 (43.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 44/169 (26%), Positives = 70/169 (41%)
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE----FEERCKE 277
+ + W A E +G + VY+R ++ + + F E FEE K
Sbjct: 476 YKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKA 535
Query: 278 TERARCIYKFALDHIPKGRAEDLYRKFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKN 336
ER ++K+ H D++ ++ F +YG ++ +E A R +E +
Sbjct: 536 YERGIALFKWPNVH-------DIWNTYLTKFIDRYGGKK-LERA-----RDLFEQALDGC 582
Query: 337 PMNY--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
P Y I+ Y +LEE G A VYERA A V E + + YI
Sbjct: 583 PAKYAKTIYLLYAKLEEEYGLARHAMAVYERATAAVEAEERHQMFNIYI 631
Score = 86 (35.3 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 44/194 (22%), Positives = 80/194 (41%)
Query: 226 STWIKYAKFEMKMGEVDRARNVYERAVE---KLADDEEAEQLFVAFAEFEERCKETERAR 282
S W+ +AKF ++D AR ++E+A + K DD A ++ + E E R + ++A
Sbjct: 391 SLWVSFAKFYEDNEQIDDARTIFEKATKVNYKQVDDLAA--VWCEYGEMELRHENYDQAS 448
Query: 283 CIYKFALDHIPKGRAE--D----LYRKFVAFEKQYGDREGIEDAI--VGKRRFQYEDEVR 334
I + A IP +AE D + + K + +E+++ + Y+ +
Sbjct: 449 RILRKATA-IPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIID 507
Query: 335 KNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEE 394
I +Y E E + + YER IA W Y+ +I +
Sbjct: 508 LRIATPQIIINYAMFLEEHNYFEESFKAYERGIALFKWPNVHDIWNTYLTKFI-----DR 562
Query: 395 LDAGDMERTRDVYQ 408
+ER RD+++
Sbjct: 563 YGGKKLERARDLFE 576
>UNIPROTKB|E2RPV4 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0006351 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 KO:K12867 CTD:56949
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459 RefSeq:XP_542113.3
ProteinModelPortal:E2RPV4 Ensembl:ENSCAFT00000029071 GeneID:484995
KEGG:cfa:484995 OMA:RRYLMYD NextBio:20859059 Uniprot:E2RPV4
Length = 855
Score = 211 (79.3 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 66/268 (24%), Positives = 122/268 (45%)
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
E + RV + VW A EES F ++V++R L++ + + YA ++K+
Sbjct: 474 EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY 533
Query: 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAG-----ARQIFERWMHWMPDQQ 193
+ ++R ++L P V +W Y+ + + G AR +FE+ + P +
Sbjct: 534 FEESFKAYERGISLFKWPNVSDIWSTYL--TKFIARYGGRKLERARDLFEQALDGCPPKY 591
Query: 194 G---WLSYIKFELRYNEVERARQIYERFVQC-HP--KVSTWIKYAKFEMKMGEVDRARNV 247
+L Y + E + A +YER + P + + Y K ++ V R +
Sbjct: 592 AKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGI 651
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y++A+E L+D E A ++ + FA+ E R E +RAR IY F ++ + F
Sbjct: 652 YQKAIEVLSD-EHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDF 710
Query: 308 EKQYGDREGIEDAIVGKRRFQ--YEDEV 333
E ++G+ + I + + +R Q Y +V
Sbjct: 711 EVRHGNEDTIREMLRIRRSVQATYNTQV 738
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/191 (25%), Positives = 93/191 (48%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EM 136
+E+ I R +++ W++Y ++++ R ++ERAL++ ++ LW +Y + ++
Sbjct: 24 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQV 82
Query: 137 KNKFINH-----ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
K++ + N +RA + ++ +LW Y G V R+ F+R + +P
Sbjct: 83 KHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPI 142
Query: 192 QQG---WLSYIKFELRYNEV-ERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV-DRAR 245
Q W Y++F LR + + E A + Y RF++ P+ +I+Y K ++ E R
Sbjct: 143 TQHSRIWPLYLRF-LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLA 201
Query: 246 NVY--ERAVEK 254
V ER V K
Sbjct: 202 TVVNDERFVSK 212
Score = 141 (54.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 49/230 (21%), Positives = 103/230 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F + E + + YER
Sbjct: 485 KVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERG 544
Query: 219 VQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P VS W Y KF + G +++RAR+++E+A++ + A+ L++ +A+ E
Sbjct: 545 ISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDG-CPPKYAKTLYLLYAQLE 603
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y+ A + + D++ ++ K+ + G+ + +Q E
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYI---KRAAEIYGVTHT---RGIYQKAIE 657
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + ++ + +E +G +RAR +Y P +WQ +
Sbjct: 658 VLSDEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTW 707
Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
Identities = 59/285 (20%), Positives = 127/285 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK+ E + AR + E+A +V ++ ++W + E+E++++ N +
Sbjct: 397 LWVAFAKFYEDNGQLDDARIILEKATKVSFKQVDDLASVWCECGELELRHE------N-Y 449
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
D+A+ LL + L + E G+ ++++ W L+ ++ L
Sbjct: 450 DQALRLLRKATALPAR--RAEYFDGSEPVQNRVYKSLKVW-----SMLADLEESL--GTF 500
Query: 209 ERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +Y+R + P++ I YA F + + + YER + ++
Sbjct: 501 QSTKAVYDRILDLRIATPQIV--INYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558
Query: 266 VAFAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAIV 322
+F R ++ ERAR +++ ALD P A+ LY + E+++G R + V
Sbjct: 559 TYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMA---V 615
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
+R + + ++ YD++ YI+ + R +Y++AI
Sbjct: 616 YERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRGIYQKAI 656
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 58/257 (22%), Positives = 107/257 (41%)
Query: 162 WYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEV-----ERAR 212
W +YI ++ Q++ER + +P + W Y+K ++++ V E
Sbjct: 38 WLRYIEFKQGAPKPR-LNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 213 QIYER-FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ER FV H W+ Y +F M G V R ++RA+ L + + +++ + F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHS-RIWPLYLRF 155
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E A Y+ L P+ AE+ Y +++ + + +V RF
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPES-AEE-YIEYLKSSDRLDEAAQRLATVVNDERFV--S 211
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYAL 391
+ K+ NY +W + L N ++ + + AI R+ + LW + A
Sbjct: 212 KAGKS--NYQLWHELCDLISQ--NPDKVQSLNVDAIIR---GGLTRFTDQLGKLWCSLAD 264
Query: 392 YEELDAGDMERTRDVYQ 408
Y + +G E+ RDVY+
Sbjct: 265 YY-IRSGHFEKARDVYE 280
>UNIPROTKB|F5H315 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0001824
EMBL:AC008763 HGNC:HGNC:14089 ChiTaRS:XAB2 IPI:IPI01015328
ProteinModelPortal:F5H315 SMR:F5H315 Ensembl:ENST00000534844
ArrayExpress:F5H315 Bgee:F5H315 Uniprot:F5H315
Length = 852
Score = 209 (78.6 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 65/268 (24%), Positives = 123/268 (45%)
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
E + RV + VW A EES F ++V++R L++ + + YA ++K+
Sbjct: 471 EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY 530
Query: 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAG-----ARQIFERWMHWMPDQQ 193
+ ++R ++L P V +W Y+ + + G AR +FE+ + P +
Sbjct: 531 FEESFKAYERGISLFKWPNVSDIWSTYL--TKFIARYGGRKLERARDLFEQALDGCPPKY 588
Query: 194 G---WLSYIKFELRYNEVERARQIYERFVQC-HP--KVSTWIKYAKFEMKMGEVDRARNV 247
+L Y + E + A +YER + P + + Y K ++ V R +
Sbjct: 589 AKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGI 648
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y++A+E L+D E A ++ + FA+ E + E +RAR IY F ++ + F
Sbjct: 649 YQKAIEVLSD-EHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDF 707
Query: 308 EKQYGDREGIEDAIVGKRRFQ--YEDEV 333
E ++G+ + I++ + +R Q Y +V
Sbjct: 708 EVRHGNEDTIKEMLRIRRSVQATYNTQV 735
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/191 (25%), Positives = 93/191 (48%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EM 136
+E+ I R +++ W++Y ++++ R ++ERAL++ ++ LW +Y + ++
Sbjct: 21 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQV 79
Query: 137 KNKFINH-----ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
K++ + N +RA + ++ +LW Y G V R+ F+R + +P
Sbjct: 80 KHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPI 139
Query: 192 QQG---WLSYIKFELRYNEV-ERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV-DRAR 245
Q W Y++F LR + + E A + Y RF++ P+ +I+Y K ++ E R
Sbjct: 140 TQHSRIWPLYLRF-LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLA 198
Query: 246 NVY--ERAVEK 254
V ER V K
Sbjct: 199 TVVNDERFVSK 209
Score = 142 (55.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 49/230 (21%), Positives = 103/230 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F + E + + YER
Sbjct: 482 KVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERG 541
Query: 219 VQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P VS W Y KF + G +++RAR+++E+A++ + A+ L++ +A+ E
Sbjct: 542 ISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDG-CPPKYAKTLYLLYAQLE 600
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y+ A + + D++ ++ K+ + G+ + +Q E
Sbjct: 601 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYI---KRAAEIYGVTHT---RGIYQKAIE 654
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + ++ + +E +G +RAR +Y P +WQ +
Sbjct: 655 VLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTW 704
Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
Identities = 58/285 (20%), Positives = 126/285 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK+ E + AR + E+A +V+++ ++W + E+E++++ + A +
Sbjct: 394 LWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLL 453
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
+A L R + Y E + N ++++ W L+ ++ L
Sbjct: 454 RKATALPARRAE----YFDGSEPVQN-----RVYKSLKVW-----SMLADLEESL--GTF 497
Query: 209 ERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +Y+R + P++ I YA F + + + YER + ++
Sbjct: 498 QSTKAVYDRILDLRIATPQIV--INYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 555
Query: 266 VAFAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAIV 322
+F R ++ ERAR +++ ALD P A+ LY + E+++G R + V
Sbjct: 556 TYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMA---V 612
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
+R + + ++ YD++ YI+ + R +Y++AI
Sbjct: 613 YERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRGIYQKAI 653
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 58/257 (22%), Positives = 107/257 (41%)
Query: 162 WYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEV-----ERAR 212
W +YI ++ Q++ER + +P + W Y+K ++++ V E
Sbjct: 35 WLRYIEFKQGAPKPR-LNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 93
Query: 213 QIYER-FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ER FV H W+ Y +F M G V R ++RA+ L + + +++ + F
Sbjct: 94 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHS-RIWPLYLRF 152
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E A Y+ L P+ AE+ Y +++ + + +V RF
Sbjct: 153 LRSHPLPETAVRGYRRFLKLSPES-AEE-YIEYLKSSDRLDEAAQRLATVVNDERFV--S 208
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYAL 391
+ K+ NY +W + L N ++ + + AI R+ + LW + A
Sbjct: 209 KAGKS--NYQLWHELCDLISQ--NPDKVQSLNVDAIIR---GGLTRFTDQLGKLWCSLAD 261
Query: 392 YEELDAGDMERTRDVYQ 408
Y + +G E+ RDVY+
Sbjct: 262 YY-IRSGHFEKARDVYE 277
Score = 111 (44.1 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 42/166 (25%), Positives = 72/166 (43%)
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETER 280
+ + W A E +G + VY+R ++ ++A Q+ + +A F E K E
Sbjct: 478 YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA----TPQIVINYAMFLEEHKYFEE 533
Query: 281 ARCIYKFALDHIPKGRAEDLYRKFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN 339
+ Y+ + D++ ++ F +YG R+ +E A R +E + P
Sbjct: 534 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFEQALDGCPPK 587
Query: 340 Y--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
Y ++ Y +LEE G A VYERA V PA++ + YI
Sbjct: 588 YAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYI 633
Score = 65 (27.9 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 52/205 (25%), Positives = 82/205 (40%)
Query: 69 LADYRLRK------RKEFEDLIRRV---RWNTGVWIKYAKWEESQKDFN-RARSVWERAL 118
LADY +R R +E+ IR V R T V+ YA++EES S R
Sbjct: 259 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREE 318
Query: 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HM---EEM 171
E D L L+ A E + I+ R + +V L P W+K + H E+
Sbjct: 319 EDDV---DLELRLARFE---QLISR-RPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREI 371
Query: 172 LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYER-----FVQCHPKVS 226
+ A Q + + W+++ KF +++ AR I E+ F Q S
Sbjct: 372 INTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLAS 431
Query: 227 TWIKYAKFEMKMGEVDRARNVYERA 251
W + + E++ D A + +A
Sbjct: 432 VWCQCGELELRHENYDEALRLLRKA 456
>UNIPROTKB|Q9HCS7 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 SMART:SM00386 GO:GO:0005654 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 EMBL:AB026111
EMBL:AF226051 EMBL:AF258567 EMBL:AF547265 EMBL:BC007208
EMBL:BC008778 EMBL:AK074035 EMBL:AB033003 IPI:IPI00163084
RefSeq:NP_064581.2 UniGene:Hs.9822 ProteinModelPortal:Q9HCS7
SMR:Q9HCS7 IntAct:Q9HCS7 MINT:MINT-1475513 STRING:Q9HCS7
PhosphoSite:Q9HCS7 DMDM:25091548 PaxDb:Q9HCS7 PeptideAtlas:Q9HCS7
PRIDE:Q9HCS7 DNASU:56949 Ensembl:ENST00000358368 GeneID:56949
KEGG:hsa:56949 UCSC:uc002mgx.3 CTD:56949 GeneCards:GC19M007684
HGNC:HGNC:14089 MIM:610850 neXtProt:NX_Q9HCS7 PharmGKB:PA134905925
HOVERGEN:HBG024066 InParanoid:Q9HCS7 OrthoDB:EOG4G4GPQ ChiTaRS:XAB2
GenomeRNAi:56949 NextBio:62545 ArrayExpress:Q9HCS7 Bgee:Q9HCS7
CleanEx:HS_XAB2 Genevestigator:Q9HCS7 GermOnline:ENSG00000076924
Uniprot:Q9HCS7
Length = 855
Score = 209 (78.6 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 65/268 (24%), Positives = 123/268 (45%)
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
E + RV + VW A EES F ++V++R L++ + + YA ++K+
Sbjct: 474 EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY 533
Query: 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAG-----ARQIFERWMHWMPDQQ 193
+ ++R ++L P V +W Y+ + + G AR +FE+ + P +
Sbjct: 534 FEESFKAYERGISLFKWPNVSDIWSTYL--TKFIARYGGRKLERARDLFEQALDGCPPKY 591
Query: 194 G---WLSYIKFELRYNEVERARQIYERFVQC-HP--KVSTWIKYAKFEMKMGEVDRARNV 247
+L Y + E + A +YER + P + + Y K ++ V R +
Sbjct: 592 AKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGI 651
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y++A+E L+D E A ++ + FA+ E + E +RAR IY F ++ + F
Sbjct: 652 YQKAIEVLSD-EHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDF 710
Query: 308 EKQYGDREGIEDAIVGKRRFQ--YEDEV 333
E ++G+ + I++ + +R Q Y +V
Sbjct: 711 EVRHGNEDTIKEMLRIRRSVQATYNTQV 738
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/191 (25%), Positives = 93/191 (48%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EM 136
+E+ I R +++ W++Y ++++ R ++ERAL++ ++ LW +Y + ++
Sbjct: 24 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQV 82
Query: 137 KNKFINH-----ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
K++ + N +RA + ++ +LW Y G V R+ F+R + +P
Sbjct: 83 KHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPI 142
Query: 192 QQG---WLSYIKFELRYNEV-ERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV-DRAR 245
Q W Y++F LR + + E A + Y RF++ P+ +I+Y K ++ E R
Sbjct: 143 TQHSRIWPLYLRF-LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLA 201
Query: 246 NVY--ERAVEK 254
V ER V K
Sbjct: 202 TVVNDERFVSK 212
Score = 142 (55.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 49/230 (21%), Positives = 103/230 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F + E + + YER
Sbjct: 485 KVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERG 544
Query: 219 VQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P VS W Y KF + G +++RAR+++E+A++ + A+ L++ +A+ E
Sbjct: 545 ISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDG-CPPKYAKTLYLLYAQLE 603
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y+ A + + D++ ++ K+ + G+ + +Q E
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYI---KRAAEIYGVTHT---RGIYQKAIE 657
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + ++ + +E +G +RAR +Y P +WQ +
Sbjct: 658 VLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTW 707
Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
Identities = 58/285 (20%), Positives = 126/285 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK+ E + AR + E+A +V+++ ++W + E+E++++ + A +
Sbjct: 397 LWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLL 456
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
+A L R + Y E + N ++++ W L+ ++ L
Sbjct: 457 RKATALPARRAE----YFDGSEPVQN-----RVYKSLKVW-----SMLADLEESL--GTF 500
Query: 209 ERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +Y+R + P++ I YA F + + + YER + ++
Sbjct: 501 QSTKAVYDRILDLRIATPQIV--INYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558
Query: 266 VAFAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAIV 322
+F R ++ ERAR +++ ALD P A+ LY + E+++G R + V
Sbjct: 559 TYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMA---V 615
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
+R + + ++ YD++ YI+ + R +Y++AI
Sbjct: 616 YERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRGIYQKAI 656
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 58/257 (22%), Positives = 107/257 (41%)
Query: 162 WYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEV-----ERAR 212
W +YI ++ Q++ER + +P + W Y+K ++++ V E
Sbjct: 38 WLRYIEFKQGAPKPR-LNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 213 QIYER-FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ER FV H W+ Y +F M G V R ++RA+ L + + +++ + F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHS-RIWPLYLRF 155
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E A Y+ L P+ AE+ Y +++ + + +V RF
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPES-AEE-YIEYLKSSDRLDEAAQRLATVVNDERFV--S 211
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYAL 391
+ K+ NY +W + L N ++ + + AI R+ + LW + A
Sbjct: 212 KAGKS--NYQLWHELCDLISQ--NPDKVQSLNVDAIIR---GGLTRFTDQLGKLWCSLAD 264
Query: 392 YEELDAGDMERTRDVYQ 408
Y + +G E+ RDVY+
Sbjct: 265 YY-IRSGHFEKARDVYE 280
Score = 111 (44.1 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 42/166 (25%), Positives = 72/166 (43%)
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETER 280
+ + W A E +G + VY+R ++ ++A Q+ + +A F E K E
Sbjct: 481 YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA----TPQIVINYAMFLEEHKYFEE 536
Query: 281 ARCIYKFALDHIPKGRAEDLYRKFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN 339
+ Y+ + D++ ++ F +YG R+ +E A R +E + P
Sbjct: 537 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFEQALDGCPPK 590
Query: 340 Y--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
Y ++ Y +LEE G A VYERA V PA++ + YI
Sbjct: 591 YAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYI 636
Score = 65 (27.9 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 52/205 (25%), Positives = 82/205 (40%)
Query: 69 LADYRLRK------RKEFEDLIRRV---RWNTGVWIKYAKWEESQKDFN-RARSVWERAL 118
LADY +R R +E+ IR V R T V+ YA++EES S R
Sbjct: 262 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREE 321
Query: 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HM---EEM 171
E D L L+ A E + I+ R + +V L P W+K + H E+
Sbjct: 322 EDDV---DLELRLARFE---QLISR-RPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREI 374
Query: 172 LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYER-----FVQCHPKVS 226
+ A Q + + W+++ KF +++ AR I E+ F Q S
Sbjct: 375 INTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLAS 434
Query: 227 TWIKYAKFEMKMGEVDRARNVYERA 251
W + + E++ D A + +A
Sbjct: 435 VWCQCGELELRHENYDEALRLLRKA 459
>UNIPROTKB|F6RY07 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 OMA:PRSYKLW
GeneTree:ENSGT00550000075140 EMBL:DAAA02019501 IPI:IPI00700985
Ensembl:ENSBTAT00000015097 Uniprot:F6RY07
Length = 855
Score = 209 (78.6 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 65/268 (24%), Positives = 123/268 (45%)
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
E + RV + VW A EES F ++V++R L++ + + YA ++K+
Sbjct: 474 EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY 533
Query: 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAG-----ARQIFERWMHWMPDQQ 193
+ ++R ++L P V +W Y+ + + G AR +FE+ + P +
Sbjct: 534 FEESFKAYERGISLFKWPNVSDIWSTYL--TKFIARYGGRKLERARDLFEQALDGCPPKY 591
Query: 194 G---WLSYIKFELRYNEVERARQIYERFVQC-HP--KVSTWIKYAKFEMKMGEVDRARNV 247
+L Y + E + A +YER + P + + Y K ++ V R++
Sbjct: 592 AKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSI 651
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y++A+E L+D E A ++ + FA+ E + E +RAR IY F ++ + F
Sbjct: 652 YQKAIEVLSD-EHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDF 710
Query: 308 EKQYGDREGIEDAIVGKRRFQ--YEDEV 333
E ++G+ + I + + +R Q Y +V
Sbjct: 711 EVRHGNEDTIREMLRIRRSVQATYNTQV 738
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/191 (25%), Positives = 93/191 (48%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EM 136
+E+ I R +++ W++Y ++++ R ++ERAL++ ++ LW +Y + ++
Sbjct: 24 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQV 82
Query: 137 KNKFINH-----ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
K++ + N +RA + ++ +LW Y G V R+ F+R + +P
Sbjct: 83 KHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPI 142
Query: 192 QQG---WLSYIKFELRYNEV-ERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV-DRAR 245
Q W Y++F LR + + E A + Y RF++ P+ +I+Y K ++ E R
Sbjct: 143 TQHSRIWPLYLRF-LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLA 201
Query: 246 NVY--ERAVEK 254
V ER V K
Sbjct: 202 TVVNDERFVSK 212
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 49/230 (21%), Positives = 103/230 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F + E + + YER
Sbjct: 485 KVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERG 544
Query: 219 VQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P VS W Y KF + G +++RAR+++E+A++ + A+ L++ +A+ E
Sbjct: 545 ISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDG-CPPKYAKTLYLLYAQLE 603
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y+ A + + D++ ++ K+ + G+ + +Q E
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYI---KRAAEIYGVTHT---RSIYQKAIE 657
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + ++ + +E +G +RAR +Y P +WQ +
Sbjct: 658 VLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTW 707
Score = 111 (44.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 42/166 (25%), Positives = 72/166 (43%)
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETER 280
+ + W A E +G + VY+R ++ ++A Q+ + +A F E K E
Sbjct: 481 YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA----TPQIVINYAMFLEEHKYFEE 536
Query: 281 ARCIYKFALDHIPKGRAEDLYRKFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN 339
+ Y+ + D++ ++ F +YG R+ +E A R +E + P
Sbjct: 537 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFEQALDGCPPK 590
Query: 340 Y--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
Y ++ Y +LEE G A VYERA V PA++ + YI
Sbjct: 591 YAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYI 636
Score = 66 (28.3 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 52/205 (25%), Positives = 83/205 (40%)
Query: 69 LADYRLRK------RKEFEDLIRRV---RWNTGVWIKYAKWEESQKDFN-RARSVWERAL 118
LADY +R R +E+ IR V R T V+ YA++EES S R
Sbjct: 262 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREE 321
Query: 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HM---EEM 171
E D L L+ A E + I+ R + +V L P W+K + H E+
Sbjct: 322 EDDV---DLELRLARFE---QLISR-RPLLLNSVLLRQNPHHVHEWHKRVPLHQGRPREI 374
Query: 172 LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYER-----FVQCHPKVS 226
+ A Q + + W+++ KF +++ AR I E+ F Q S
Sbjct: 375 INTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLAS 434
Query: 227 TWIKYAKFEMKMGEVDRARNVYERA 251
W + + E++ D+A + +A
Sbjct: 435 VWCECGELELRHENYDQALRLLRKA 459
>POMBASE|SPBC211.02c [details] [associations]
symbol:cwf3 "complexed with Cdc5 protein Cwf3"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0044732 "mitotic spindle
pole body" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPBC211.02c
GO:GO:0005829 GO:GO:0044732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0045292
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
OrthoDB:EOG4DBXP7 EMBL:AF251149 PIR:T50337 RefSeq:NP_596612.1
ProteinModelPortal:Q9P7R9 IntAct:Q9P7R9 STRING:Q9P7R9
EnsemblFungi:SPBC211.02c.1 GeneID:2540753 KEGG:spo:SPBC211.02c
NextBio:20801873 Uniprot:Q9P7R9
Length = 790
Score = 208 (78.3 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 63/256 (24%), Positives = 123/256 (48%)
Query: 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR 145
R+ ++ +W+ Y EES R +++R E+ + + YA + +N + +
Sbjct: 475 RLHKSSKIWMYYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSF 534
Query: 146 NVWDRAVTLL--PRVDQLWYKYI--HMEEMLG-NVAGARQIFERWMHWMPDQQG---WLS 197
+++R V L P +LW Y+ ++ G ++ R +FE+ + P + +L
Sbjct: 535 KIYERGVALFSYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLL 594
Query: 198 YIKFELRYNEVERARQIYERF---VQCHPKVSTW-IKYAKFEMKMGEVDRARNVYERAVE 253
Y FE ++ + +R+ I E+ V+ +++ + + K + G V R VYE+A+E
Sbjct: 595 YADFEEKFGKAKRSISILEKAADKVKTADRLAIYNVLLVKVALNYG-VLATRTVYEKAIE 653
Query: 254 KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313
L+D E + + + FAE E + E +RAR IY + D ++ + FE +YG+
Sbjct: 654 SLSDSE-VKDMCLRFAEMETKLGEIDRARLIYIHGSQYCDPRVETDYWKAWQEFEIRYGN 712
Query: 314 -REGIEDAIVGKRRFQ 328
E +++ + KR Q
Sbjct: 713 PEETVKEMLRIKRSVQ 728
Score = 155 (59.6 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 75/314 (23%), Positives = 136/314 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VWI +A+ E ++F+ AR + A+ ++H F + + + R
Sbjct: 430 VWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHI------------SFFDESLSPQVR-- 475
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEV-ER 210
L + ++W Y+ +EE +G + R++++R + Q ++Y L N E
Sbjct: 476 --LHKSSKIWMYYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANL-LEENAYFED 532
Query: 211 ARQIYERFVQC--HPKV-STWIKY-AKFEMK-MG-EVDRARNVYERAVEKLADDEEAEQL 264
+ +IYER V +P W Y KF + G ++R R+++E+A+E E ++ +
Sbjct: 533 SFKIYERGVALFSYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQALEG-CPPEFSKSI 591
Query: 265 FVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKF-VAFEKQYG---DREGIEDA 320
++ +A+FEE+ + +R+ I + A D + +Y V YG R E A
Sbjct: 592 YLLYADFEEKFGKAKRSISILEKAADKVKTADRLAIYNVLLVKVALNYGVLATRTVYEKA 651
Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
I + EV+ D+ + +E +G +RAR +Y P E YW+
Sbjct: 652 IESLS----DSEVK------DMCLRFAEMETKLGEIDRARLIYIHGSQYCDPRVETDYWK 701
Query: 381 RYIYLWINYALYEE 394
+ I Y EE
Sbjct: 702 AWQEFEIRYGNPEE 715
Score = 148 (57.2 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 68/296 (22%), Positives = 139/296 (46%)
Query: 96 KYAKWEESQKDFNRARSVWERALEVDYR--NHT--LWLKYAEVEMKNKFINHARNVWDRA 151
++A++ E+ D ++R ++E+A V Y+ N +W+ +AE+E++++ + AR + A
Sbjct: 395 EFARFYENFDDLEQSRIIFEKATHVPYKTVNELAQVWIDWAEMELRHQNFDAARKLIGDA 454
Query: 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERA 211
V PR + + +E L + Q+ R +H + W+ Y+ E +E
Sbjct: 455 VHA-PRKSHISF----FDESL-----SPQV--R-LH--KSSKIWMYYLDLEESVGTIETT 499
Query: 212 RQIYERFVQCHPKVST---WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAF 268
R++Y+R + K++T + YA + + + +YER V + E +
Sbjct: 500 RKLYDRVFEL--KIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYPVAFELWNLYL 557
Query: 269 AEFEERCKET--ERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRR 326
+F +R + T ER R +++ AL+ P ++ +Y + FE+++G + +I+ K
Sbjct: 558 TKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFGKAKR-SISILEKAA 616
Query: 327 FQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ + R Y++ + L V R VYE+AI ++ +E K R+
Sbjct: 617 DKVKTADRL--AIYNVLLVKVALNYGV---LATRTVYEKAIESLSDSEVKDMCLRF 667
>DICTYBASE|DDB_G0277977 [details] [associations]
symbol:xab2 "TPR-like helical domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 dictyBase:DDB_G0277977 GO:GO:0005634 GO:GO:0008380
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006281
GO:GO:0006397 GO:GO:0006351 Gene3D:1.25.40.10 RefSeq:XP_642044.1
ProteinModelPortal:Q54Z08 STRING:Q54Z08 EnsemblProtists:DDB0233461
GeneID:8621256 KEGG:ddi:DDB_G0277977 eggNOG:NOG289100 KO:K12867
OMA:PRSYKLW ProtClustDB:CLSZ2729105 Uniprot:Q54Z08
Length = 850
Score = 208 (78.3 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 59/271 (21%), Positives = 126/271 (46%)
Query: 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK 137
+E E + +R+ + +W Y EES F+ +S++E+ +++ + L +A+ +
Sbjct: 484 EENEPVQKRLFKSIKIWTFYVDLEESFGTFHNTKSIYEKMIQLKVVTPQIILNFAKYLEE 543
Query: 138 NKFINHARNVWDRAVTLL--PRVDQLWYKYI--HMEEMLG-NVAGARQIFERWMHWMPDQ 192
NK+ ++ V L P V +W Y+ ++ G + R +FE+ + +P +
Sbjct: 544 NKYFEDMFKAYEHGVQLFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPPK 603
Query: 193 QG---WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGE---VDRARN 246
+ +L Y FE +Y + +Y+R + K + Y + + E V++ R
Sbjct: 604 ESIIFYLMYANFEEQYGLARHSMAVYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQTRE 663
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
++ +A+E+L D + + + FA+ E++ E +RAR IY + + +
Sbjct: 664 IFSKAIEQLPD-QYVRDMCLKFADMEKKYGEIDRARSIYIHGSQFSDPRTSMFYWNTWSD 722
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337
FEK +G+ + ++ + +R Q + +NP
Sbjct: 723 FEKLHGNEDTFKEMLRIRRSVQ-ASYITQNP 752
Score = 146 (56.5 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 53/233 (22%), Positives = 104/233 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEV-ERARQIYER 217
++W Y+ +EE G + I+E+ + + Q L++ K+ L N+ E + YE
Sbjct: 498 KIWTFYVDLEESFGTFHNTKSIYEKMIQLKVVTPQIILNFAKY-LEENKYFEDMFKAYEH 556
Query: 218 FVQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
VQ P V WI Y KF + +++R R+++E+ + K+ +E+ ++ +A F
Sbjct: 557 GVQLFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPP-KESIIFYLMYANF 615
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
EE+ + +Y A + K ED ++ ++ + + + G V + R +
Sbjct: 616 EEQYGLARHSMAVYDRAAKSVDK---EDRFKMYLLYIHRASEFFG-----VNQTREIFSK 667
Query: 332 EVRKNPMNY--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ + P Y D+ + +E+ G +RAR +Y P YW +
Sbjct: 668 AIEQLPDQYVRDMCLKFADMEKKYGEIDRARSIYIHGSQFSDPRTSMFYWNTW 720
Score = 134 (52.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 61/286 (21%), Positives = 129/286 (45%)
Query: 128 WLKYAEVEMKNKFINHARN-VWDRAVTLLPRVDQLWYKYIHMEEMLG---------NVAG 177
WL+Y +E K RN +++RA+ LPR ++W++Y+ +E L +
Sbjct: 48 WLRY--LEFKQGSPQKQRNYIYERAIRELPRSYKIWHQYL-LERTLAIRGKCILENSFEA 104
Query: 178 ARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVS---TWIKYAK 233
+FER + ++ W+ Y +F + ++ R+ ++R + P W +Y K
Sbjct: 105 VNTLFERSLVFLDKMPRIWIEYCEFLMIQEKITLTRKTFDRALIALPVTQHYRIWNEYTK 164
Query: 234 FEMKMGEVD-RARNVYERAVEKLADD-EEAEQLFVAFAEFEERCKETERARCIYKFALDH 291
F +K VY+R ++ + EE + + E++E + + KF
Sbjct: 165 FILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEYLIKIKEWQEVVNQLIKLLDNVKFK--S 222
Query: 292 IPKGRAE-DLYRKFVAFEKQYGDR-EGIE-DAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
I KG++ D + + Y + G++ D+++ ++ D++ K + YI+
Sbjct: 223 I-KGKSRHDHWLQLCEILSSYPKQITGVDVDSVIRSGIGKFSDQIGKLWCYLSDY--YIQ 279
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEE 394
L + E+AR+++E A+ +V A + + ++W +Y +E+
Sbjct: 280 LAQF----EKARDIFEEALTSVGTARD------FSFIWESYTQFED 315
Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
Identities = 51/245 (20%), Positives = 110/245 (44%)
Query: 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAE 133
K + + + + +T ++ +A + E ++AR ++E +L V+++ TL+ YAE
Sbjct: 396 KSIDPQLAKGKLST-IYSTFAHFYEQNNKLSQARLIFENSLTVNFKTIDDLSTLYCDYAE 454
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQ 193
+E+K++ A + R T+ P+ +EE N +++F+ +
Sbjct: 455 MELKHRNYEKAIEILKRG-TVSPKKQNTI-----IEE---NEPVQKRLFK-------SIK 498
Query: 194 GWLSYIKFELRYNEVERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYER 250
W Y+ E + + IYE+ +Q P++ + +AK+ + + YE
Sbjct: 499 IWTFYVDLEESFGTFHNTKSIYEKMIQLKVVTPQII--LNFAKYLEENKYFEDMFKAYEH 556
Query: 251 AVEKLADDEEAEQLFVAF-AEFEERCK--ETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
V+ L + +++ + +F +R + ER R +++ L +P + Y + F
Sbjct: 557 GVQ-LFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYLMYANF 615
Query: 308 EKQYG 312
E+QYG
Sbjct: 616 EEQYG 620
Score = 120 (47.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 36/165 (21%), Positives = 84/165 (50%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYA---EVEM 136
+E+ + + ++ W++Y ++++ R ++ERA+ R++ +W +Y + +
Sbjct: 34 YEEDVSKNPYSVNCWLRYLEFKQGSPQKQR-NYIYERAIRELPRSYKIWHQYLLERTLAI 92
Query: 137 KNKFI--N--HARN-VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
+ K I N A N +++R++ L ++ ++W +Y + + R+ F+R + +P
Sbjct: 93 RGKCILENSFEAVNTLFERSLVFLDKMPRIWIEYCEFLMIQEKITLTRKTFDRALIALPV 152
Query: 192 QQG---WLSYIKFELRYNEVE-RARQIYERFVQCHP-KVSTWIKY 231
Q W Y KF L+ + ++Y+R+++ P KV +I+Y
Sbjct: 153 TQHYRIWNEYTKFILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEY 197
Score = 88 (36.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 35/164 (21%), Positives = 69/164 (42%)
Query: 225 VSTWIKYAKFEMKMGEVDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETERARC 283
+ W Y E G +++YE+ ++ K+ Q+ + FA++ E K E
Sbjct: 497 IKIWTFYVDLEESFGTFHNTKSIYEKMIQLKVV----TPQIILNFAKYLEENKYFEDMFK 552
Query: 284 IYKFALDHIPKGRAEDLYRKFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
Y+ + +D++ ++ F ++Y G++ + + R +E + K P I
Sbjct: 553 AYEHGVQLFLFPHVQDIWITYLTKFIQRYA---GMK---LERTRDLFEQVLSKVPPKESI 606
Query: 343 WFD--YIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIY 384
F Y EE G + VY+RA +V + + + YI+
Sbjct: 607 IFYLMYANFEEQYGLARHSMAVYDRAAKSVDKEDRFKMYLLYIH 650
Score = 71 (30.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 29/116 (25%), Positives = 54/116 (46%)
Query: 264 LFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDL---YRKFVAFEKQYGDRE-GIE- 318
++ FA F E+ + +AR I++ +L + +DL Y + E ++ + E IE
Sbjct: 410 IYSTFAHFYEQNNKLSQARLIFENSLT-VNFKTIDDLSTLYCDYAEMELKHRNYEKAIEI 468
Query: 319 ---DAIVGKRR---FQYEDEVRKNPM-NYDIWFDYIRLEESVGNKERAREVYERAI 367
+ K++ + + V+K + IW Y+ LEES G + +YE+ I
Sbjct: 469 LKRGTVSPKKQNTIIEENEPVQKRLFKSIKIWTFYVDLEESFGTFHNTKSIYEKMI 524
Score = 44 (20.5 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 385 LWINYAL-YEELDAG-DMERTRDVYQ 408
+WI Y + + AG +ERTRD+++
Sbjct: 569 IWITYLTKFIQRYAGMKLERTRDLFE 594
>UNIPROTKB|F1SCH5 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 KO:K12867 OMA:PRSYKLW
CTD:56949 GeneTree:ENSGT00550000075140 EMBL:CU929919
RefSeq:XP_003123199.1 UniGene:Ssc.48349 Ensembl:ENSSSCT00000014834
GeneID:100525328 KEGG:ssc:100525328 Uniprot:F1SCH5
Length = 855
Score = 208 (78.3 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 65/268 (24%), Positives = 122/268 (45%)
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
E + RV + VW A EES F ++V++R L++ + + YA ++K+
Sbjct: 474 EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY 533
Query: 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAG-----ARQIFERWMHWMPDQQ 193
+ ++R ++L P V +W Y+ + + G AR +FE+ + P +
Sbjct: 534 FEESFKAYERGISLFKWPNVSDIWSTYL--TKFIARYGGRKLERARDLFEQALDGCPPKY 591
Query: 194 G---WLSYIKFELRYNEVERARQIYERFVQC-HP--KVSTWIKYAKFEMKMGEVDRARNV 247
+L Y + E + A +YER + P + + Y K ++ V R +
Sbjct: 592 AKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPSQQYDMFNIYIKRAAEIYGVTHTRGI 651
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y++A+E L+D E A ++ + FA+ E + E +RAR IY F ++ + F
Sbjct: 652 YQKAIEVLSD-EHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDF 710
Query: 308 EKQYGDREGIEDAIVGKRRFQ--YEDEV 333
E ++G+ + I + + +R Q Y +V
Sbjct: 711 EVRHGNEDTIREMLRIRRSVQATYNTQV 738
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/191 (25%), Positives = 93/191 (48%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EM 136
+E+ I R +++ W++Y ++++ R ++ERAL++ ++ LW +Y + ++
Sbjct: 24 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQV 82
Query: 137 KNKFINH-----ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
K++ + N +RA + ++ +LW Y G V R+ F+R + +P
Sbjct: 83 KHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPI 142
Query: 192 QQG---WLSYIKFELRYNEV-ERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV-DRAR 245
Q W Y++F LR + + E A + Y RF++ P+ +I+Y K ++ E R
Sbjct: 143 TQHSRIWPLYLRF-LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLA 201
Query: 246 NVY--ERAVEK 254
V ER V K
Sbjct: 202 TVVNDERFVSK 212
Score = 142 (55.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 49/230 (21%), Positives = 103/230 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F + E + + YER
Sbjct: 485 KVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERG 544
Query: 219 VQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P VS W Y KF + G +++RAR+++E+A++ + A+ L++ +A+ E
Sbjct: 545 ISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDG-CPPKYAKTLYLLYAQLE 603
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y+ A + + D++ ++ K+ + G+ + +Q E
Sbjct: 604 EEWGLARHAMAVYERATRAVEPSQQYDMFNIYI---KRAAEIYGVTHT---RGIYQKAIE 657
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + ++ + +E +G +RAR +Y P +WQ +
Sbjct: 658 VLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTW 707
Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
Identities = 59/285 (20%), Positives = 124/285 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK+ E + AR + E+A +V ++ ++W + E+E++++ N +
Sbjct: 397 LWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWCECGELELRHE------N-Y 449
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
D+A+ LL + L + E G+ ++++ W L+ ++ L
Sbjct: 450 DQALRLLRKATALPAR--RAEYFDGSEPVQNRVYKSLKVW-----SMLADLEESL--GTF 500
Query: 209 ERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +Y+R + P++ I YA F + + + YER + ++
Sbjct: 501 QSTKAVYDRILDLRIATPQIV--INYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558
Query: 266 VAFAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAIV 322
+F R ++ ERAR +++ ALD P A+ LY + E+++G R + A+
Sbjct: 559 TYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAM--AVY 616
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
+ E YD++ YI+ + R +Y++AI
Sbjct: 617 ERATRAVEPS-----QQYDMFNIYIKRAAEIYGVTHTRGIYQKAI 656
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 58/257 (22%), Positives = 107/257 (41%)
Query: 162 WYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEV-----ERAR 212
W +YI ++ Q++ER + +P + W Y+K ++++ V E
Sbjct: 38 WLRYIEFKQGAPKPR-LNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 213 QIYER-FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ER FV H W+ Y +F M G V R ++RA+ L + + +++ + F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHS-RIWPLYLRF 155
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E A Y+ L P+ AE+ Y +++ + + +V RF
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPES-AEE-YIEYLKSSDRLDEAAQRLATVVNDERFV--S 211
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYAL 391
+ K+ NY +W + L N ++ + + AI R+ + LW + A
Sbjct: 212 KAGKS--NYQLWHELCDLISQ--NPDKVQSLNVDAIIR---GGLTRFTDQLGKLWCSLAD 264
Query: 392 YEELDAGDMERTRDVYQ 408
Y + +G E+ RDVY+
Sbjct: 265 YY-IRSGHFEKARDVYE 280
Score = 108 (43.1 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETER 280
+ + W A E +G + VY+R ++ ++A Q+ + +A F E K E
Sbjct: 481 YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA----TPQIVINYAMFLEEHKYFEE 536
Query: 281 ARCIYKFALDHIPKGRAEDLYRKFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN 339
+ Y+ + D++ ++ F +YG R+ +E A R +E + P
Sbjct: 537 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRK-LERA-----RDLFEQALDGCPPK 590
Query: 340 Y--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
Y ++ Y +LEE G A VYERA V P+++ + YI
Sbjct: 591 YAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPSQQYDMFNIYI 636
Score = 66 (28.3 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 52/205 (25%), Positives = 83/205 (40%)
Query: 69 LADYRLRK------RKEFEDLIRRV---RWNTGVWIKYAKWEESQKDFN-RARSVWERAL 118
LADY +R R +E+ IR V R T V+ YA++EES S R
Sbjct: 262 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREE 321
Query: 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HM---EEM 171
E D L L+ A E + I+ R + +V L P W+K + H E+
Sbjct: 322 EDDV---DLELRLARFE---QLISR-RPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREI 374
Query: 172 LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYER-----FVQCHPKVS 226
+ A Q + + W+++ KF +++ AR I E+ F Q S
Sbjct: 375 INTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLAS 434
Query: 227 TWIKYAKFEMKMGEVDRARNVYERA 251
W + + E++ D+A + +A
Sbjct: 435 VWCECGELELRHENYDQALRLLRKA 459
>UNIPROTKB|O94906 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9606
"Homo sapiens" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=NAS]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=NAS;TAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0003713 "transcription
coactivator activity" evidence=IGI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006403 "RNA
localization" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0050681 "androgen receptor binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IDA]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0071001 "U4/U6 snRNP"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=IC;IMP] Reactome:REACT_71 InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 SMART:SM00386
GO:GO:0005654 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0045944
GO:GO:0005682 GO:GO:0000244 GO:GO:0003723 Orphanet:791
EMBL:AL118506 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0071013 GO:GO:0000245 GO:GO:0046540
GO:GO:0006403 ChiTaRS:PRPF6 GO:GO:0071001 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW EMBL:AB019219 EMBL:AF221842
EMBL:AF026031 EMBL:AK001554 EMBL:AK314310 EMBL:AL356790
EMBL:AL355803 EMBL:BC001666 EMBL:AL137320 IPI:IPI00305068
PIR:T46386 RefSeq:NP_036601.2 UniGene:Hs.31334
ProteinModelPortal:O94906 SMR:O94906 DIP:DIP-29006N IntAct:O94906
MINT:MINT-260551 STRING:O94906 PhosphoSite:O94906 PaxDb:O94906
PeptideAtlas:O94906 PRIDE:O94906 Ensembl:ENST00000266079
Ensembl:ENST00000535781 GeneID:24148 KEGG:hsa:24148 UCSC:uc002yho.3
GeneCards:GC20P062612 HGNC:HGNC:15860 HPA:HPA047106 MIM:613979
MIM:613983 neXtProt:NX_O94906 PharmGKB:PA25682 InParanoid:O94906
PhylomeDB:O94906 GenomeRNAi:24148 NextBio:46847 Bgee:O94906
CleanEx:HS_PRPF6 Genevestigator:O94906 GermOnline:ENSG00000101161
Uniprot:O94906
Length = 941
Score = 208 (78.3 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 70/277 (25%), Positives = 119/277 (42%)
Query: 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169
AR+++ AL+V ++WL+ A E + + RAV P+ + LW +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 170 EMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228
+ G+V AR I P+ + WL+ +K E +E ERAR++ + P +
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVF 678
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
+K K E + A+++ E A+ E+ +L++ + EE+ + E+AR Y
Sbjct: 679 MKSVKLEWVQDNIRAAQDLCEEALRHY---EDFPKLWMMKGQIEEQKEMMEKAREAYNQG 735
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348
L P + L+ E++ G AI+ K R KNP N +W + +R
Sbjct: 736 LKKCP--HSTPLWLLLSRLEEKIGQLTRAR-AILEKSRL-------KNPKNPGLWLESVR 785
Query: 349 LEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
LE G K A + +A+ P W I+L
Sbjct: 786 LEYRAGLKNIANTLMAKALQECP--NSGILWSEAIFL 820
Score = 163 (62.4 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 72/301 (23%), Positives = 128/301 (42%)
Query: 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWE-----RA-----LEVDYRNHTL 127
K + I +R N GV I +W + ++ +RA SV RA +E + R HT
Sbjct: 485 KIIDRAITSLRAN-GVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHT- 542
Query: 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187
W++ A+ + + + AR ++ A+ + P +W + + E+ G + +R +
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 602
Query: 188 WMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVST-WIKYAKFEMKMGEVDRAR 245
P + WL K + +V AR I Q +P W+ K E + E +RAR
Sbjct: 603 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERAR 662
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFV 305
R + K ++F+ + E A+ + + AL H ED + K
Sbjct: 663 ----RLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHY-----ED-FPKLW 712
Query: 306 AFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYER 365
+ Q +++ + + K R Y ++K P + +W RLEE +G RAR + E+
Sbjct: 713 MMKGQIEEQKEMME----KAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEK 768
Query: 366 A 366
+
Sbjct: 769 S 769
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 63/316 (19%), Positives = 137/316 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
VW++ A +E++ ++ +RA+ + LWL A+ + + AR++ A
Sbjct: 576 VWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAF 635
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P +++W + +E AR++ + P + ++ +K E + + A+
Sbjct: 636 QANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQ 695
Query: 213 QIYE---RFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
+ E R + PK+ W+ + E + +++AR Y + ++K + L++ +
Sbjct: 696 DLCEEALRHYEDFPKL--WMMKGQIEEQKEMMEKAREAYNQGLKKCP---HSTPLWLLLS 750
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
EE+ + RAR I + + PK L+ + V E + G + I + ++ K
Sbjct: 751 RLEEKIGQLTRARAILEKSRLKNPKNPG--LWLESVRLEYRAG-LKNIANTLMAKA---- 803
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI--ANVPPAEEKRYW-QRYIYL- 385
+++ P + +W + I LE + ++ + ++ +V A K +W QR I
Sbjct: 804 ---LQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKA 860
Query: 386 --WINYALYEELDAGD 399
W + + + D GD
Sbjct: 861 REWFHRTVKIDSDLGD 876
Score = 131 (51.2 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 59/236 (25%), Positives = 98/236 (41%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHT-LWLKYAEVEMKNKFINHARNVWDRA 151
V++K K E Q + A+ + E AL Y + LW+ ++E + + + AR +++
Sbjct: 677 VFMKSVKLEWVQDNIRAAQDLCEEALR-HYEDFPKLWMMKGQIEEQKEMMEKAREAYNQG 735
Query: 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVER 210
+ P LW +EE +G + AR I E+ P G WL ++ E R
Sbjct: 736 LKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNI 795
Query: 211 ARQIYERFVQ-CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
A + + +Q C W + E + R ++V A++K D L VA
Sbjct: 796 ANTLMAKALQECPNSGILWSEAIFLEARPQR--RTKSV--DALKKCEHDPHV-LLAVAKL 850
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325
+ +R K T+ ++ G D + F FE Q+G E E+ V KR
Sbjct: 851 FWSQR-KITKAREWFHRTVKIDSDLG---DAWAFFYKFELQHGTEEQQEE--VRKR 900
Score = 131 (51.2 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 71/325 (21%), Positives = 134/325 (41%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ E + AR V +A E + +W+ A++E N + DRA+
Sbjct: 436 LWLALARLET----YENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAI 491
Query: 153 TLLPR--VD---QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----WLSYIKFEL 203
T L V+ + W + + G+VA + + + +++ W+ +
Sbjct: 492 TSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCV 551
Query: 204 RYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
+N +E AR IY +Q P K S W++ A FE G + + +RAV A +AE
Sbjct: 552 AHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV---AHCPKAE 608
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
L++ A+ + + AR I A P +E+++ V E + + E +
Sbjct: 609 VLWLMGAKSKWLAGDVPAARSILALAFQANPN--SEEIWLAAVKLESENDEYERARRLLA 666
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
+ R + ++ ++LE N A+++ E A+ R+++ +
Sbjct: 667 ---------KARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEAL---------RHYEDF 708
Query: 383 IYLWINYALYEELDAGDMERTRDVY 407
LW+ EE ME+ R+ Y
Sbjct: 709 PKLWMMKGQIEE-QKEMMEKAREAY 732
Score = 127 (49.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 40/192 (20%), Positives = 86/192 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119
K +I + E+ + + R+ + +++ +T +W+ ++ EE RAR++ E++
Sbjct: 715 KGQIEEQKEMME---KAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRL 771
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179
+ +N LWL+ +E + N A + +A+ P LW + I +E +
Sbjct: 772 KNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSV 831
Query: 180 QIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKM 238
++ H D L+ K ++ +AR+ + R V+ + W + KFE++
Sbjct: 832 DALKKCEH---DPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQH 888
Query: 239 GEVDRARNVYER 250
G ++ V +R
Sbjct: 889 GTEEQQEEVRKR 900
Score = 43 (20.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 285 YKFALDHIPKGRAEDLYRKFVAFEKQYGD 313
YKF L H + + E++ ++ + E ++G+
Sbjct: 882 YKFELQHGTEEQQEEVRKRCESAEPRHGE 910
Score = 40 (19.1 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 341 DIWFDYIRLEESVGNKERAREVYERAIANVP 371
D W + + E G +E+ EV +R + P
Sbjct: 876 DAWAFFYKFELQHGTEEQQEEVRKRCESAEP 906
>ASPGD|ASPL0000052140 [details] [associations]
symbol:AN0111 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0008380 EMBL:BN001308
GO:GO:0006397 GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10
EMBL:AACD01000004 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
RefSeq:XP_657715.1 ProteinModelPortal:Q5BH69 STRING:Q5BH69
EnsemblFungi:CADANIAT00002638 GeneID:2875887 KEGG:ani:AN0111.2
HOGENOM:HOG000176133 OrthoDB:EOG4DBXP7 Uniprot:Q5BH69
Length = 851
Score = 205 (77.2 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 70/265 (26%), Positives = 123/265 (46%)
Query: 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHA 144
+R+ + +W Y ES + V+ER E+ + YA + ++K+ +
Sbjct: 504 QRIHKSWKLWSFYVDLVESVSSIEETKKVYERIFELRIATPQTVVNYANLLEEHKYFEES 563
Query: 145 RNVWDRAVTLL--PRVDQLWYKYIH--MEEMLGNVAGARQIFERWMHWMPDQQG---WLS 197
V++R + L P +LW Y+ ++ +G + R +FE+ + P + +L
Sbjct: 564 FKVYERGLDLFTYPVAFELWNLYLTKAVDRKIG-IERLRDLFEQALDGCPPKFARPLYLM 622
Query: 198 YIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGE------VDRARNVYERA 251
Y E A +IYER + VS ++ FE + + + R +YERA
Sbjct: 623 YGNLEEERGLARHAMRIYERATRA---VSDEDRFEMFEFYITKSASNFGLPSTRPIYERA 679
Query: 252 VEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI-PKGRAEDLYRKFVAFEKQ 310
+ L D EA+++ + FAE E R E +RAR IY A P+ A ++K+ AFE Q
Sbjct: 680 IAALPD-HEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDPRTNAP-FWQKWEAFEVQ 737
Query: 311 YGDREGIEDAIVGKR--RFQYEDEV 333
+G+ + ++ + KR + QY +V
Sbjct: 738 HGNEDTFKEMLRIKRSVQAQYNTDV 762
Score = 175 (66.7 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 70/290 (24%), Positives = 130/290 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN-HTL---WLKYAEVEMKNKFINHARNVW 148
+W+ YAK+ E D + AR ++E+A++V +++ + L W ++AE+E++++ + A +
Sbjct: 422 LWVNYAKFYERGGDLDTARIIFEKAVKVPFKSVNELAETWCEWAEMELRSENFDKAVEIM 481
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
+A T P+ + Y +E L + ++I + W W Y+ + +
Sbjct: 482 AKA-TQAPKKSTVDY----FDETL---SPQQRIHKSWKLWS-------FYVDLVESVSSI 526
Query: 209 ERARQIYERFVQCHPKV-STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
E +++YER + T + YA + + + VYER ++ E +
Sbjct: 527 EETKKVYERIFELRIATPQTVVNYANLLEEHKYFEESFKVYERGLDLFTYPVAFELWNLY 586
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAIVGKRR 326
+ +R ER R +++ ALD P A LY + E++ G R + I +
Sbjct: 587 LTKAVDRKIGIERLRDLFEQALDGCPPKFARPLYLMYGNLEEERGLARHAMR--IYERAT 644
Query: 327 FQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376
DE R ++++ YI S R +YERAIA +P E K
Sbjct: 645 RAVSDEDR-----FEMFEFYITKSASNFGLPSTRPIYERAIAALPDHEAK 689
Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
Identities = 58/291 (19%), Positives = 118/291 (40%)
Query: 105 KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNV--WDRAVTLLPRVDQ-- 160
K N W E++ R+ + K E+ K V +D ++ R+ +
Sbjct: 452 KSVNELAETWCEWAEMELRSEN-FDKAVEIMAKATQAPKKSTVDYFDETLSPQQRIHKSW 510
Query: 161 -LWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
LW Y+ + E + ++ ++++ER + Q ++Y + E + ++YER
Sbjct: 511 KLWSFYVDLVESVSSIEETKKVYERIFELRIATPQTVVNYANLLEEHKYFEESFKVYERG 570
Query: 219 VQC--HPKV-STWIKYAK--FEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEE 273
+ +P W Y + K+G ++R R+++E+A++ + A L++ + EE
Sbjct: 571 LDLFTYPVAFELWNLYLTKAVDRKIG-IERLRDLFEQALDG-CPPKFARPLYLMYGNLEE 628
Query: 274 RCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV 333
A IY+ A + ED + F + + G+ R YE +
Sbjct: 629 ERGLARHAMRIYERATRAVSD---EDRFEMFEFYITKSASNFGLPST-----RPIYERAI 680
Query: 334 RKNPMNY--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
P + ++ + +E +G +RAR +Y A P +WQ++
Sbjct: 681 AALPDHEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDPRTNAPFWQKW 731
Score = 107 (42.7 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 44/187 (23%), Positives = 81/187 (43%)
Query: 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKF 287
W A + + G ++AR+V+E + + + +F ++ EFEE + + +
Sbjct: 280 WAGLATYWITKGNFEKARDVFEEGITTVMTVRDFTLIFDSYVEFEESIIGS-----LMEA 334
Query: 288 ALDHIPKGRAE-----DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV-RKNPMNYD 341
A G+A+ DL + + FE+ ++ +R F D + R+NP N
Sbjct: 335 AAVRADNGKADEEADFDLDLRMLRFEQ-----------LMDRRPFLVNDVLLRQNPNNVI 383
Query: 342 IWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDME 401
W + L N Y AIA + P K+ ++ LW+NYA + E GD++
Sbjct: 384 EWEKRVALWGD--NNVEIVNTYTAAIAAINP---KKAVGKFSELWVNYAKFYER-GGDLD 437
Query: 402 RTRDVYQ 408
R +++
Sbjct: 438 TARIIFE 444
Score = 99 (39.9 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 39/149 (26%), Positives = 67/149 (44%)
Query: 113 VWERALEVDYRNHTLWLKYAEVE---MKN----KF---INHARNVWDRAVTLLPRVDQLW 162
V ERA + R++ LW Y E +KN K+ +++RA+ LL ++ ++W
Sbjct: 71 VMERACKQLPRSYKLWKMYLEFRTKHLKNRNAIKYRAEFQKVNTLFERALILLNKMPRIW 130
Query: 163 YKYIHMEEMLGNVAGARQIFERWMHWMPDQQG---WLSYIKFELRYNEVERARQIYERFV 219
Y+ V R+ F+R + +P Q W Y F R + A +I+ R++
Sbjct: 131 EMYLTFMLQQPLVTQTRRTFDRALRALPVTQHNRIWKLYKTFA-RSASGQTAVKIWARYM 189
Query: 220 QCHPKVSTWIKYAKFEMKMGEVDRARNVY 248
Q HP+ + +Y ++MG A Y
Sbjct: 190 QIHPENAE--EYINLLVEMGHYTDAIKRY 216
>MGI|MGI:1914689 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10090 "Mus
musculus" [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 MGI:MGI:1914689 GO:GO:0008380 GO:GO:0006397
GO:GO:0006351 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 CTD:56949
HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ EMBL:AK002890 EMBL:AK008628
EMBL:BC021341 IPI:IPI00120744 RefSeq:NP_080432.1 UniGene:Mm.23739
ProteinModelPortal:Q9DCD2 SMR:Q9DCD2 STRING:Q9DCD2
PhosphoSite:Q9DCD2 PaxDb:Q9DCD2 PRIDE:Q9DCD2
Ensembl:ENSMUST00000019614 GeneID:67439 KEGG:mmu:67439
UCSC:uc009kry.1 GeneTree:ENSGT00550000075140 InParanoid:Q9DCD2
NextBio:324566 Bgee:Q9DCD2 CleanEx:MM_XAB2 Genevestigator:Q9DCD2
GermOnline:ENSMUSG00000019470 Uniprot:Q9DCD2
Length = 855
Score = 205 (77.2 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 64/268 (23%), Positives = 122/268 (45%)
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
E + RV + VW A EES F ++V++R L++ + + YA ++K+
Sbjct: 474 EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY 533
Query: 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAG-----ARQIFERWMHWMPDQQ 193
+ ++R ++L P V +W Y+ + + G AR +FE+ + P +
Sbjct: 534 FEESFKAYERGISLFKWPNVSDIWSTYL--TKFISRYGGRKLERARDLFEQALDGCPPKY 591
Query: 194 G---WLSYIKFELRYNEVERARQIYERFVQC-HP--KVSTWIKYAKFEMKMGEVDRARNV 247
+L Y + E + A +Y+R + P + + Y K ++ V R +
Sbjct: 592 AKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGI 651
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y++A+E L+D E A ++ + FA+ E + E +RAR IY F ++ + F
Sbjct: 652 YQKAIEVLSD-EHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDF 710
Query: 308 EKQYGDREGIEDAIVGKRRFQ--YEDEV 333
E ++G+ + I + + +R Q Y +V
Sbjct: 711 EVRHGNEDTIREMLRIRRSVQATYNTQV 738
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/191 (25%), Positives = 93/191 (48%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EM 136
+E+ I R +++ W++Y ++++ R ++ERAL++ ++ LW +Y + ++
Sbjct: 24 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQV 82
Query: 137 KNKFINH-----ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
K++ + N +RA + ++ +LW Y G V R+ F+R + +P
Sbjct: 83 KHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPI 142
Query: 192 QQG---WLSYIKFELRYNEV-ERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV-DRAR 245
Q W Y++F LR + + E A + Y RF++ P+ +I+Y K ++ E R
Sbjct: 143 TQHSRIWPLYLRF-LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLA 201
Query: 246 NVY--ERAVEK 254
V ER V K
Sbjct: 202 TVVNDERFVSK 212
Score = 140 (54.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 49/230 (21%), Positives = 102/230 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F + E + + YER
Sbjct: 485 KVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERG 544
Query: 219 VQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P VS W Y KF + G +++RAR+++E+A++ + A+ L++ +A+ E
Sbjct: 545 ISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDG-CPPKYAKTLYLLYAQLE 603
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y A + + D++ ++ K+ + G+ + +Q E
Sbjct: 604 EEWGLARHAMAVYDRATRAVEPAQQYDMFNIYI---KRAAEIYGVTHT---RGIYQKAIE 657
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + ++ + +E +G +RAR +Y P +WQ +
Sbjct: 658 VLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTW 707
Score = 123 (48.4 bits), Expect = 0.00032, P = 0.00032
Identities = 58/285 (20%), Positives = 123/285 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK+ E + AR + E+A +V+++ ++W + E+E++++ + A +
Sbjct: 397 LWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKLL 456
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
+A L R + Y E + N ++++ W L+ ++ L
Sbjct: 457 RKATALPARRAE----YFDGSEPVQN-----RVYKSLKVW-----SMLADLEESL--GTF 500
Query: 209 ERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +Y+R + P++ I YA F + + + YER + ++
Sbjct: 501 QSTKAVYDRILDLRIATPQIV--INYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558
Query: 266 VAFAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAIV 322
+F R ++ ERAR +++ ALD P A+ LY + E+++G R + A+
Sbjct: 559 TYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAM--AVY 616
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
+ E YD++ YI+ + R +Y++AI
Sbjct: 617 DRATRAVEPA-----QQYDMFNIYIKRAAEIYGVTHTRGIYQKAI 656
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 58/257 (22%), Positives = 107/257 (41%)
Query: 162 WYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEV-----ERAR 212
W +YI ++ Q++ER + +P + W Y+K ++++ V E
Sbjct: 38 WLRYIEFKQGAPKPR-LNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 213 QIYER-FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ER FV H W+ Y +F M G V R ++RA+ L + + +++ + F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHS-RIWPLYLRF 155
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E A Y+ L P+ AE+ Y +++ + + +V RF
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPES-AEE-YIEYLKSSDRLDEAAQRLATVVNDERFV--S 211
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYAL 391
+ K+ NY +W + L N ++ + + AI R+ + LW + A
Sbjct: 212 KAGKS--NYQLWHELCDLISQ--NPDKVQSLNVDAIIR---GGLTRFTDQLGKLWCSLAD 264
Query: 392 YEELDAGDMERTRDVYQ 408
Y + +G E+ RDVY+
Sbjct: 265 YY-IRSGHFEKARDVYE 280
Score = 109 (43.4 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETER 280
+ + W A E +G + VY+R ++ ++A Q+ + +A F E K E
Sbjct: 481 YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA----TPQIVINYAMFLEEHKYFEE 536
Query: 281 ARCIYKFALDHIPKGRAEDLYRKFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN 339
+ Y+ + D++ ++ F +YG R+ +E A R +E + P
Sbjct: 537 SFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRK-LERA-----RDLFEQALDGCPPK 590
Query: 340 Y--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
Y ++ Y +LEE G A VY+RA V PA++ + YI
Sbjct: 591 YAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYI 636
Score = 65 (27.9 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 52/205 (25%), Positives = 82/205 (40%)
Query: 69 LADYRLRK------RKEFEDLIRRV---RWNTGVWIKYAKWEESQKDFN-RARSVWERAL 118
LADY +R R +E+ IR V R T V+ YA++EES S R
Sbjct: 262 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREE 321
Query: 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HM---EEM 171
E D L L+ A E + I+ R + +V L P W+K + H E+
Sbjct: 322 EDDV---DLELRLARFE---QLISR-RPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREI 374
Query: 172 LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYER-----FVQCHPKVS 226
+ A Q + + W+++ KF +++ AR I E+ F Q S
Sbjct: 375 INTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLAS 434
Query: 227 TWIKYAKFEMKMGEVDRARNVYERA 251
W + + E++ D A + +A
Sbjct: 435 VWCQCGELELRHENYDEALKLLRKA 459
>RGD|621217 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10116 "Rattus
norvegicus" [GO:0001824 "blastocyst development" evidence=IEA;ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 RGD:621217 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 CTD:56949 HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ
GeneTree:ENSGT00550000075140 EMBL:AF277899 EMBL:BC081723
IPI:IPI00201089 RefSeq:NP_620809.1 UniGene:Rn.24921
ProteinModelPortal:Q99PK0 STRING:Q99PK0 Ensembl:ENSRNOT00000001309
GeneID:245976 KEGG:rno:245976 UCSC:RGD:621217 InParanoid:Q99PK0
NextBio:623254 Genevestigator:Q99PK0 GermOnline:ENSRNOG00000000988
Uniprot:Q99PK0
Length = 855
Score = 205 (77.2 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 64/268 (23%), Positives = 122/268 (45%)
Query: 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
E + RV + VW A EES F ++V++R L++ + + YA ++K+
Sbjct: 474 EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY 533
Query: 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAG-----ARQIFERWMHWMPDQQ 193
+ ++R ++L P V +W Y+ + + G AR +FE+ + P +
Sbjct: 534 FEESFKAYERGISLFKWPNVSDIWSTYL--TKFISRYGGRKLERARDLFEQALDGCPPKY 591
Query: 194 G---WLSYIKFELRYNEVERARQIYERFVQC-HP--KVSTWIKYAKFEMKMGEVDRARNV 247
+L Y + E + A +Y+R + P + + Y K ++ V R +
Sbjct: 592 AKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGI 651
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y++A+E L+D E A ++ + FA+ E + E +RAR IY F ++ + F
Sbjct: 652 YQKAIEVLSD-EHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDF 710
Query: 308 EKQYGDREGIEDAIVGKRRFQ--YEDEV 333
E ++G+ + I + + +R Q Y +V
Sbjct: 711 EVRHGNEDTIREMLRIRRSVQATYNTQV 738
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 48/191 (25%), Positives = 93/191 (48%)
Query: 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EM 136
+E+ I R +++ W++Y ++++ R ++ERAL++ ++ LW +Y + ++
Sbjct: 24 YEEEIMRNQFSVKCWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQV 82
Query: 137 KNKFINH-----ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
K++ + N +RA + ++ +LW Y G V R+ F+R + +P
Sbjct: 83 KHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPI 142
Query: 192 QQG---WLSYIKFELRYNEV-ERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV-DRAR 245
Q W Y++F LR + + E A + Y RF++ P+ +I+Y K ++ E R
Sbjct: 143 TQHSRIWPLYLRF-LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLA 201
Query: 246 NVY--ERAVEK 254
V ER V K
Sbjct: 202 TVVNDERFVSK 212
Score = 140 (54.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 49/230 (21%), Positives = 102/230 (44%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEVERARQIYERF 218
++W +EE LG + +++R + + Q ++Y F + E + + YER
Sbjct: 485 KVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERG 544
Query: 219 VQCH--PKVST-WIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
+ P VS W Y KF + G +++RAR+++E+A++ + A+ L++ +A+ E
Sbjct: 545 ISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDG-CPPKYAKTLYLLYAQLE 603
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E A +Y A + + D++ ++ K+ + G+ + +Q E
Sbjct: 604 EEWGLARHAMAVYDRATRAVEPAQQYDMFNIYI---KRAAEIYGVTHT---RGIYQKAIE 657
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
V + ++ + +E +G +RAR +Y P +WQ +
Sbjct: 658 VLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTW 707
Score = 123 (48.4 bits), Expect = 0.00032, P = 0.00032
Identities = 58/285 (20%), Positives = 123/285 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVW 148
+W+ +AK+ E + AR + E+A +V+++ ++W + E+E++++ + A +
Sbjct: 397 LWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKLL 456
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
+A L R + Y E + N ++++ W L+ ++ L
Sbjct: 457 RKATALPARRAE----YFDGSEPVQN-----RVYKSLKVW-----SMLADLEESL--GTF 500
Query: 209 ERARQIYERFVQCH---PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ + +Y+R + P++ I YA F + + + YER + ++
Sbjct: 501 QSTKAVYDRILDLRIATPQIV--INYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWS 558
Query: 266 VAFAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGIEDAIV 322
+F R ++ ERAR +++ ALD P A+ LY + E+++G R + A+
Sbjct: 559 TYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAM--AVY 616
Query: 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
+ E YD++ YI+ + R +Y++AI
Sbjct: 617 DRATRAVEPA-----QQYDMFNIYIKRAAEIYGVTHTRGIYQKAI 656
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 58/257 (22%), Positives = 107/257 (41%)
Query: 162 WYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEV-----ERAR 212
W +YI ++ Q++ER + +P + W Y+K ++++ V E
Sbjct: 38 WLRYIEFKQGAPKPR-LNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 213 QIYER-FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ER FV H W+ Y +F M G V R ++RA+ L + + +++ + F
Sbjct: 97 NCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHS-RIWPLYLRF 155
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E A Y+ L P+ AE+ Y +++ + + +V RF
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPES-AEE-YIEYLKSSDRLDEAAQRLATVVNDERFV--S 211
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYAL 391
+ K+ NY +W + L N ++ + + AI R+ + LW + A
Sbjct: 212 KAGKS--NYQLWHELCDLISQ--NPDKVQSLNVDAIIR---GGLTRFTDQLGKLWCSLAD 264
Query: 392 YEELDAGDMERTRDVYQ 408
Y + +G E+ RDVY+
Sbjct: 265 YY-IRSGHFEKARDVYE 280
Score = 109 (43.4 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETER 280
+ + W A E +G + VY+R ++ ++A Q+ + +A F E K E
Sbjct: 481 YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIA----TPQIVINYAMFLEEHKYFEE 536
Query: 281 ARCIYKFALDHIPKGRAEDLYRKFVA-FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN 339
+ Y+ + D++ ++ F +YG R+ +E A R +E + P
Sbjct: 537 SFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRK-LERA-----RDLFEQALDGCPPK 590
Query: 340 Y--DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
Y ++ Y +LEE G A VY+RA V PA++ + YI
Sbjct: 591 YAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYI 636
Score = 65 (27.9 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 52/205 (25%), Positives = 82/205 (40%)
Query: 69 LADYRLRK------RKEFEDLIRRV---RWNTGVWIKYAKWEESQKDFN-RARSVWERAL 118
LADY +R R +E+ IR V R T V+ YA++EES S R
Sbjct: 262 LADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREE 321
Query: 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HM---EEM 171
E D L L+ A E + I+ R + +V L P W+K + H E+
Sbjct: 322 EDDV---DLELRLARFE---QLISR-RPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREI 374
Query: 172 LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYER-----FVQCHPKVS 226
+ A Q + + W+++ KF +++ AR I E+ F Q S
Sbjct: 375 INTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLAS 434
Query: 227 TWIKYAKFEMKMGEVDRARNVYERA 251
W + + E++ D A + +A
Sbjct: 435 VWCQCGELELRHENYDEALKLLRKA 459
>POMBASE|SPBC6B1.07 [details] [associations]
symbol:prp1 "U4/U6 x U5 tri-snRNP complex subunit Prp1"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 PomBase:SPBC6B1.07
EMBL:CU329671 GenomeReviews:CU329671_GR eggNOG:COG0457
Gene3D:1.25.40.10 GO:GO:0046540 GO:GO:0045292 EMBL:D83659
EMBL:D83743 PIR:T45158 RefSeq:NP_596086.1 ProteinModelPortal:Q12381
IntAct:Q12381 STRING:Q12381 EnsemblFungi:SPBC6B1.07.1
GeneID:2541185 KEGG:spo:SPBC6B1.07 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY OrthoDB:EOG4D82F8 NextBio:20802297 InterPro:IPR027108
PANTHER:PTHR11246:SF1 Uniprot:Q12381
Length = 906
Score = 199 (75.1 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 70/293 (23%), Positives = 130/293 (44%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153
W+ A+ ++K + AR+V+ +L V ++ LWL+ E+E ++ ++AV
Sbjct: 513 WLDDAQSFIARKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVE 572
Query: 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERAR 212
P+ + LW Y + + ++AGAR I R + + + WL+ ++ E NE ERAR
Sbjct: 573 SCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERAR 632
Query: 213 QIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
++ R W K E + E DRA + E A+ K+ ++L++ +
Sbjct: 633 KLLARARIESGTERIWTKSISLERILDEKDRALQLLENAL-KIYP--HYDKLYMMKGQIF 689
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E ++ E AR Y P + L+ E++ +++ + R ++
Sbjct: 690 EDKEQIELARDAYLAGTKVCPY--SIPLWLLLAKLEEK--------QSVI-RARVVFDRA 738
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
KNP N +W + I++E GN + R +A+ P + W I+L
Sbjct: 739 KVKNPKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSG--LLWTEAIWL 789
Score = 153 (58.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 74/299 (24%), Positives = 131/299 (43%)
Query: 100 WEES---QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP 156
W+E+ +++ + AR + RA+E+ + LWL A +E +A+ V ++A +
Sbjct: 376 WKEAVNLEEEVDNARILLARAVELIPMSIDLWLALARLET----YENAKKVLNKARQTIR 431
Query: 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKF--ELRYNEVERARQI 214
++W +EE GNV+ +I R + + G L ++ E E E A
Sbjct: 432 TSHEVWIAAARLEEQQGNVSRVEKIMARGVSELQATGGMLQRDQWLSEAEKCETEGAVIT 491
Query: 215 YERFVQ-C-------HPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFV 266
+ + C + TW+ A+ + +D AR V+ ++ ++E+L++
Sbjct: 492 AQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVFAFSLRVYP---KSEKLWL 548
Query: 267 AFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRR 326
E E+ TE I + A++ PK AE L+ + K D G + I+G R
Sbjct: 549 RAVELEKLYGTTESVCSILEKAVESCPK--AEILWLLYAKERKNVNDIAGARN-ILG-RA 604
Query: 327 FQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
F+Y N + +IW +R+E ERAR++ RA + E R W + I L
Sbjct: 605 FEY------NSNSEEIWLAAVRIEFVNNENERARKLLARA--RIESGTE-RIWTKSISL 654
Score = 151 (58.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 67/280 (23%), Positives = 123/280 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN-KFINHARNVWDRA 151
+W++ + E+ S+ E+A+E + LWL YA+ E KN I ARN+ RA
Sbjct: 546 LWLRAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAK-ERKNVNDIAGARNILGRA 604
Query: 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERA 211
+++W + +E + AR++ R ++ W I E +E +RA
Sbjct: 605 FEYNSNSEEIWLAAVRIEFVNNENERARKLLARARIESGTERIWTKSISLERILDEKDRA 664
Query: 212 RQIYERFVQCHPKVST--WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
Q+ E ++ +P +K FE K +++ AR+ Y A K+ + L++ A
Sbjct: 665 LQLLENALKIYPHYDKLYMMKGQIFEDKE-QIELARDAY-LAGTKVCP--YSIPLWLLLA 720
Query: 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
+ EE+ + RAR ++ A PK E L+ + + E + G+ + A+
Sbjct: 721 KLEEK-QSVIRARVVFDRAKVKNPKN--EFLWLELIKMELRAGNISQVRAALA------- 770
Query: 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369
+++ P + +W + I LE K RA + + N
Sbjct: 771 -KALQECPSSGLLWTEAIWLEPRAQRKTRATDALRKCEGN 809
Score = 145 (56.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 62/240 (25%), Positives = 103/240 (42%)
Query: 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERAL-EVDYRNHTL----WLKYAE-VEMKNKF 140
+R + VWI A+ EE Q + +R + R + E+ L WL AE E +
Sbjct: 430 IRTSHEVWIAAARLEEQQGNVSRVEKIMARGVSELQATGGMLQRDQWLSEAEKCETEGAV 489
Query: 141 INHARNVWDRAVTL-LPRVDQL--WYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WL 196
I A+ + + + + L DQ W + AR +F + P + WL
Sbjct: 490 IT-AQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVFAFSLRVYPKSEKLWL 548
Query: 197 SYIKFELRYNEVERARQIYERFVQCHPKVST-WIKYAKFEMKMGEVDRARNVYERAVEKL 255
++ E Y E I E+ V+ PK W+ YAK + ++ ARN+ RA E
Sbjct: 549 RAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYN 608
Query: 256 ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDRE 315
++ EE +++A E E ERAR + A I G E ++ K ++ E+ +++
Sbjct: 609 SNSEE---IWLAAVRIEFVNNENERARKL--LARARIESG-TERIWTKSISLERILDEKD 662
Score = 118 (46.6 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 48/222 (21%), Positives = 95/222 (42%)
Query: 65 DSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
++ +L D R + RK + +I + W+ A+ EE ++A+S+ + E R+
Sbjct: 253 NANDLGDIR-KARKLLQSVIETNPKHASGWVAAARLEEVANKLSQAQSLILKGCENCSRS 311
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
+WL+ + + A+ + AV LP+ LW + E++ ++I ++
Sbjct: 312 EDVWLEAIRLHPAAE----AKVIIANAVKKLPKSVTLW---LEAEKLENQAQHKKRIIKK 364
Query: 185 WMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVD 242
+ + P W + E EV+ AR + R V+ P + W+ A+ E +
Sbjct: 365 ALEFNPTSVSLWKEAVNLE---EEVDNARILLARAVELIPMSIDLWLALARLET----YE 417
Query: 243 RARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCI 284
A+ V +A + + E +++A A EE+ R I
Sbjct: 418 NAKKVLNKARQTIRTSHE---VWIAAARLEEQQGNVSRVEKI 456
Score = 48 (22.0 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 324 KRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREV 362
K R + V+ + N D+W + + GN+++ +EV
Sbjct: 828 KARSWFLKAVKADQDNGDVWCWFYKYSLEAGNEDQQKEV 866
>ASPGD|ASPL0000068414 [details] [associations]
symbol:AN7447 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00028 SMART:SM00386 GO:GO:0005634 eggNOG:COG0457
Gene3D:1.25.40.10 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000398
HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY OrthoDB:EOG4D82F8
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_680716.1
ProteinModelPortal:Q5AW83 STRING:Q5AW83
EnsemblFungi:CADANIAT00000537 GeneID:2869476 KEGG:ani:AN7447.2
Uniprot:Q5AW83
Length = 941
Score = 199 (75.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 65/281 (23%), Positives = 128/281 (45%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ AK S+ + AR+++ AL V ++W+ A++E + V ++AV
Sbjct: 543 IWMDDAKASISRGKYETARAIYAYALRVFVNRRSIWVAAADLERNHGTKEALWQVLEKAV 602
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERA 211
P+ ++LW + + G + AR++ R + P+ + WL+ +K E + ++A
Sbjct: 603 EACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEADAQQTDQA 662
Query: 212 RQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
R++ + WIK FE ++G VD A ++ + ++ +A++L++ +
Sbjct: 663 RELLATARREAGTDRVWIKSVAFERQLGNVDDALDLVNQGLQLYP---KADKLWMMKGQI 719
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E + +AR Y PK A L+ E++ G A+V R D
Sbjct: 720 YESQNKLPQAREAYGTGTRACPKSVA--LWLLASRLEEKAG-------AVVRARSVL--D 768
Query: 332 EVRKN-PMNYDIWFDYIRLEESVGNKERAREVYERAIANVP 371
R P + ++W + +R+E N +A+ + RA+ VP
Sbjct: 769 RARLAVPNSPELWTESVRVERRANNIPQAKVLMARALQEVP 809
Score = 151 (58.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 68/317 (21%), Positives = 130/317 (41%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A E + V E+A+E ++ LWL+ A+ + ++ I+ AR V RA
Sbjct: 577 IWVAAADLERNHGTKEALWQVLEKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAF 636
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212
P + +W + +E AR++ + W+ + FE + V+ A
Sbjct: 637 NQNPNNEDIWLAAVKLEADAQQTDQARELLATARREAGTDRVWIKSVAFERQLGNVDDAL 696
Query: 213 QIYERFVQCHPKVST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271
+ + +Q +PK W+ + ++ +AR Y ++ L++ +
Sbjct: 697 DLVNQGLQLYPKADKLWMMKGQIYESQNKLPQAREAYGTGTRACP---KSVALWLLASRL 753
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA-IVGKRRFQYE 330
EE+ RAR + A +P + +L+ + V E++ + I A ++ R Q
Sbjct: 754 EEKAGAVVRARSVLDRARLAVPN--SPELWTESVRVERRANN---IPQAKVLMARALQ-- 806
Query: 331 DEVRKNPMNYDIWFDYI-RLEESVGNKERAREVYERAIANVPP---AEEKRYW-QRYI-- 383
EV P + +W + I LE K R+ E ++ + N P + +W +R +
Sbjct: 807 -EV---PSSGLLWSESIWHLEPRSQRKARSLEAIKK-VDNDPILFITVARIFWGERRLEK 861
Query: 384 -YLWINYALYEELDAGD 399
W A+ D GD
Sbjct: 862 AMTWFEKAIISNSDFGD 878
Score = 147 (56.8 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 74/326 (22%), Positives = 139/326 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL-----WLKYAE-VEMKNKFINHARN 146
+WI ++ +E FN+ +V +RA++ R + + W+ AE E + +
Sbjct: 467 IWIAASRLQEQMGTFNKV-NVMKRAVQSLARENAMLKREEWIAEAEKCEEEGAVLTCGAI 525
Query: 147 VWDRAVTLLPRVDQ---LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFE 202
+ + L D +W G AR I+ + +++ W++ E
Sbjct: 526 IRETLGWGLDEDDDRKDIWMDDAKASISRGKYETARAIYAYALRVFVNRRSIWVAAADLE 585
Query: 203 LRYNEVERARQIYERFVQ-CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261
+ E Q+ E+ V+ C W++ AK + + GE+D AR V RA + ++E+
Sbjct: 586 RNHGTKEALWQVLEKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNED- 644
Query: 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
+++A + E ++T++AR + A R ++ K VAFE+Q G+ ++DA+
Sbjct: 645 --IWLAAVKLEADAQQTDQARELLATARREAGTDR---VWIKSVAFERQLGN---VDDAL 696
Query: 322 -VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
+ + Q + K +W ++ ES +ARE Y P +
Sbjct: 697 DLVNQGLQLYPKADK------LWMMKGQIYESQNKLPQAREAYGTGTRACPKS------- 743
Query: 381 RYIYLWINYALYEELDAGDMERTRDV 406
+ LW+ + EE AG + R R V
Sbjct: 744 --VALWLLASRLEE-KAGAVVRARSV 766
Score = 142 (55.0 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 60/261 (22%), Positives = 102/261 (39%)
Query: 118 LEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAG 177
L+ D +W+ A+ + AR ++ A+ + +W +E G
Sbjct: 534 LDEDDDRKDIWMDDAKASISRGKYETARAIYAYALRVFVNRRSIWVAAADLERNHGTKEA 593
Query: 178 ARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFE 235
Q+ E+ + P + WL K + + E++ AR++ R +P W+ K E
Sbjct: 594 LWQVLEKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLE 653
Query: 236 MKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295
+ D+AR + A + D ++++ FE + + A + L PK
Sbjct: 654 ADAQQTDQARELLATARREAGTD----RVWIKSVAFERQLGNVDDALDLVNQGLQLYPK- 708
Query: 296 RAEDLYR-KFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG 354
A+ L+ K +E Q + A R Y R P + +W RLEE G
Sbjct: 709 -ADKLWMMKGQIYESQ----NKLPQA-----REAYGTGTRACPKSVALWLLASRLEEKAG 758
Query: 355 NKERAREVYERAIANVPPAEE 375
RAR V +RA VP + E
Sbjct: 759 AVVRARSVLDRARLAVPNSPE 779
Score = 141 (54.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 61/274 (22%), Positives = 116/274 (42%)
Query: 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV-EMKNKFINH 143
RR VWIK +E + + A + + L++ + LW+ ++ E +NK +
Sbjct: 670 RREAGTDRVWIKSVAFERQLGNVDDALDLVNQGLQLYPKADKLWMMKGQIYESQNK-LPQ 728
Query: 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQ-QGWLSYIKFE 202
AR + P+ LW +EE G V AR + +R +P+ + W ++ E
Sbjct: 729 AREAYGTGTRACPKSVALWLLASRLEEKAGAVVRARSVLDRARLAVPNSPELWTESVRVE 788
Query: 203 LRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262
R N + +A+ + R +Q P + + ++ +AR++ A++K+ +D
Sbjct: 789 RRANNIPQAKVLMARALQEVPSSGLLWSESIWHLEPRSQRKARSL--EAIKKVDNDPI-- 844
Query: 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
LF+ A + E+A ++ A+ I D + + F Q+G E D ++
Sbjct: 845 -LFITVARIFWGERRLEKAMTWFEKAI--ISNSDFGDAWAWYYKFLLQHGTDEKRAD-VI 900
Query: 323 GK------RRFQYEDEVRKNPMN-YDIWFDYIRL 349
K + + + KNP N Y D ++L
Sbjct: 901 SKCVLSEPKHGEVWQSIAKNPANAYKSTEDILKL 934
Score = 119 (46.9 bits), Expect = 0.00097, P = 0.00097
Identities = 55/293 (18%), Positives = 116/293 (39%)
Query: 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149
N +W+ K E + ++AR + A + +W+K E + ++ A ++ +
Sbjct: 642 NEDIWLAAVKLEADAQQTDQARELLATARR-EAGTDRVWIKSVAFERQLGNVDDALDLVN 700
Query: 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEV 208
+ + L P+ D+LW + E + AR+ + P WL + E + V
Sbjct: 701 QGLQLYPKADKLWMMKGQIYESQNKLPQAREAYGTGTRACPKSVALWLLASRLEEKAGAV 760
Query: 209 ERARQIYERFVQCHPKV-STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
RAR + +R P W + + E + + +A+ + RA++++ + L +
Sbjct: 761 VRARSVLDRARLAVPNSPELWTESVRVERRANNIPQAKVLMARALQEVP----SSGLLWS 816
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327
+ + + +AR +L+ I K + + F+ + + +E A+
Sbjct: 817 ESIWHLEPRSQRKAR-----SLEAIKKVDNDPIL--FITVARIFWGERRLEKAMTW---- 865
Query: 328 QYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
+E + N D W Y + G E+ +V + + + P E WQ
Sbjct: 866 -FEKAIISNSDFGDAWAWYYKFLLQHGTDEKRADVISKCVLSEPKHGE--VWQ 915
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 201 (75.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 72/323 (22%), Positives = 150/323 (46%)
Query: 58 PPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNR---ARSVW 114
PP+ + +DS E D + ++ + + R+ + ++ EE+ D R + +
Sbjct: 1550 PPRGESSDSEE--DNKPQQSTQKKSKKERMLEKQKAEKELSRIEEALMDPGRQPESADDF 1607
Query: 115 ERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQ----LWYKYIHME 169
+R L + LWL+Y ++ I AR V +RA+ T+ R +Q +W +++E
Sbjct: 1608 DRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLE 1667
Query: 170 EMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTW 228
M G+ ++FER + + + +L + + + A ++Y R ++ + + W
Sbjct: 1668 NMYGSQESLTKVFERAVQYNEPLKVFLHLADIYNKSEKFQEAGELYNRMLKRFRQEKAVW 1727
Query: 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
IKY F ++ G+ + V +RA+E L + E + + FA+ E + + ERA+ I++
Sbjct: 1728 IKYGAFLLRRGQAGASHRVMQRALECLPNKEHVD-VIAKFAQLEFQLGDAERAKAIFENT 1786
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFD-YI 347
L PK R D++ ++ ++G ++ + D F+ + P +F Y+
Sbjct: 1787 LSTYPK-RT-DVWSVYIDMTIKHGSQKEVRDI------FERVIHLSLAPKRMKFFFKRYL 1838
Query: 348 RLEESVGNKERAREVYERAIANV 370
E+ G ++ + V +A+ V
Sbjct: 1839 DYEKQHGTEKDVQAVKAKALEYV 1861
Score = 158 (60.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 54/221 (24%), Positives = 100/221 (45%)
Query: 182 FERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYER------FVQCHPKVSTWIKYAKF 234
F+R + P+ WL Y+ F L+ E+E+AR + ER F + K++ W+
Sbjct: 1607 FDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1666
Query: 235 EMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294
E G + V+ERAV+ E ++F+ A+ + ++ + A +Y L +
Sbjct: 1667 ENMYGSQESLTKVFERAVQY----NEPLKVFLHLADIYNKSEKFQEAGELYNRMLKRFRQ 1722
Query: 295 GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG 354
+A ++ K+ AF + G A R Q E N + D+ + +LE +G
Sbjct: 1723 EKA--VWIKYGAFLLRRGQ------AGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLG 1774
Query: 355 NKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEEL 395
+ ERA+ ++E ++ P + W YI + I + +E+
Sbjct: 1775 DAERAKAIFENTLSTYPKRTD--VWSVYIDMTIKHGSQKEV 1813
>WB|WBGene00016837 [details] [associations]
symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 192 (72.6 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 82/304 (26%), Positives = 130/304 (42%)
Query: 127 LWLKYAEVEMKNKFINHARNVWDRA-VTLLP-----------RVDQ---LWYKYIHMEEM 171
+W YAE+EMK+K A V RA V P RV + LW Y EE
Sbjct: 441 VWCAYAEMEMKHKRAKAALTVMQRACVVPKPGDYENMQSVQARVHRSPILWAMYADYEEC 500
Query: 172 LGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEV-ERARQIYERFVQCH--PKV-S 226
G V R+++++ + + Q ++Y F L NE E A Q YE+ + P V
Sbjct: 501 CGTVESCRKVYDKMIELRVASPQMIMNYAMF-LEENEYFELAFQAYEKGIALFKWPGVFD 559
Query: 227 TWIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
W Y KF + G +++RAR+++E+ +E A+ +F+ +A+ EE A
Sbjct: 560 IWNTYLVKFIKRYGGKKLERARDLFEQCLEN-CPPTHAKYIFLLYAKLEEEHGLARHALS 618
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI-VGKRRFQYEDEVRKNPMNYDI 342
IY A + + +Y ++ K+ + GI + +R E + M+
Sbjct: 619 IYNRACSGVDRADMHSMYNIYI---KKVQEMYGIAQCRPIFERAISELPEDKSRAMS--- 672
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYE--ELDAGDM 400
Y +LE +VG +RAR +Y A P ++W W N+ + E DM
Sbjct: 673 -LRYAQLETTVGEIDRARAIYAHAAEISDPKVHVKFWDT----WKNFEVAHGNEATVRDM 727
Query: 401 ERTR 404
R R
Sbjct: 728 LRVR 731
Score = 173 (66.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 59/252 (23%), Positives = 113/252 (44%)
Query: 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR 145
RV + +W YA +EE R V+++ +E+ + + + YA +N++ A
Sbjct: 483 RVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAF 542
Query: 146 NVWDRAVTLL--PRVDQLWYKYI--HMEEMLGN-VAGARQIFERWMHWMPDQQG---WLS 197
+++ + L P V +W Y+ ++ G + AR +FE+ + P +L
Sbjct: 543 QAYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLL 602
Query: 198 YIKFELRYNEVERARQIYERFVQCHPKV---STWIKYAKFEMKMGEVDRARNVYERAVEK 254
Y K E + A IY R + S + Y K +M + + R ++ERA+ +
Sbjct: 603 YAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAISE 662
Query: 255 LADDEEAEQLFVAFAEFEERCKETERARCIYKFALD-HIPKGRAEDLYRKFVAFEKQYGD 313
L +D+ + + + +A+ E E +RAR IY A + PK + + + FE +G+
Sbjct: 663 LPEDK-SRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVK-FWDTWKNFEVAHGN 720
Query: 314 REGIEDAIVGKR 325
+ D + +R
Sbjct: 721 EATVRDMLRVRR 732
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/176 (25%), Positives = 86/176 (48%)
Query: 81 EDLIRRVRWNTGVWIKYAKWE-ESQKDFNRARSVWERALEVDYRNHTLW---LKYAEVEM 136
ED+IR + W +Y + +++ + ++ERAL V R++ LW LKY E +
Sbjct: 31 EDIIRNPT-SVNCWQRYIDHKLQNKSPAKQMFLIYERALAVFERSYKLWYHYLKYRESTI 89
Query: 137 KNKFI--NHAR---NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
NK N R + ++R + L ++ ++W Y + G + R++F+R + +P
Sbjct: 90 VNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPV 149
Query: 192 QQG---WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRA 244
Q W YI F ++ E ++Y R+++ +PK Y ++ ++ ++D A
Sbjct: 150 TQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKARE--DYVEYLIERDQIDEA 203
Score = 129 (50.5 bits), Expect = 7.0e-05, P = 6.9e-05
Identities = 54/227 (23%), Positives = 96/227 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHT----LWLKYAEVEMKNKFINHARNVW 148
+WI AK E D + AR +E A+ + + +W YAE+EMK+K A V
Sbjct: 403 LWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVM 462
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
RA ++P+ Y +M+ + V H P W Y +E V
Sbjct: 463 QRAC-VVPKPGD----YENMQSVQARV-----------HRSPIL--WAMYADYEECCGTV 504
Query: 209 ERARQIYERFVQCHPKVSTWI-KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
E R++Y++ ++ I YA F + + A YE+ + +
Sbjct: 505 ESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTY 564
Query: 268 FAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312
+F +R K+ ERAR +++ L++ P A+ ++ + E+++G
Sbjct: 565 LVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHG 611
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 58/223 (26%), Positives = 95/223 (42%)
Query: 195 WLSYIKFELRYNEVERARQIYE-----RFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYE 249
W+ K +++ AR+ +E +F + W YA+ EMK A V +
Sbjct: 404 WIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQ 463
Query: 250 RA--VEKLADDEEAEQ----------LFVAFAEFEERCKETERARCIYKFALDHIPKGRA 297
RA V K D E + L+ +A++EE C E R +Y ++ + +
Sbjct: 464 RACVVPKPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIEL--RVAS 521
Query: 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ-YEDEVR--KNPMNYDIWFDY-IRLEESV 353
+ + F ++ E E A FQ YE + K P +DIW Y ++ +
Sbjct: 522 PQMIMNYAMFLEE---NEYFELA------FQAYEKGIALFKWPGVFDIWNTYLVKFIKRY 572
Query: 354 GNK--ERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEE 394
G K ERAR+++E+ + N PP K Y+++ YA EE
Sbjct: 573 GGKKLERARDLFEQCLENCPPTHAK-------YIFLLYAKLEE 608
>UNIPROTKB|P91175 [details] [associations]
symbol:C50F2.3 "Protein C50F2.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 192 (72.6 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 82/304 (26%), Positives = 130/304 (42%)
Query: 127 LWLKYAEVEMKNKFINHARNVWDRA-VTLLP-----------RVDQ---LWYKYIHMEEM 171
+W YAE+EMK+K A V RA V P RV + LW Y EE
Sbjct: 441 VWCAYAEMEMKHKRAKAALTVMQRACVVPKPGDYENMQSVQARVHRSPILWAMYADYEEC 500
Query: 172 LGNVAGARQIFERWMHW-MPDQQGWLSYIKFELRYNEV-ERARQIYERFVQCH--PKV-S 226
G V R+++++ + + Q ++Y F L NE E A Q YE+ + P V
Sbjct: 501 CGTVESCRKVYDKMIELRVASPQMIMNYAMF-LEENEYFELAFQAYEKGIALFKWPGVFD 559
Query: 227 TWIKY-AKFEMKMG--EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
W Y KF + G +++RAR+++E+ +E A+ +F+ +A+ EE A
Sbjct: 560 IWNTYLVKFIKRYGGKKLERARDLFEQCLEN-CPPTHAKYIFLLYAKLEEEHGLARHALS 618
Query: 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI-VGKRRFQYEDEVRKNPMNYDI 342
IY A + + +Y ++ K+ + GI + +R E + M+
Sbjct: 619 IYNRACSGVDRADMHSMYNIYI---KKVQEMYGIAQCRPIFERAISELPEDKSRAMS--- 672
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYE--ELDAGDM 400
Y +LE +VG +RAR +Y A P ++W W N+ + E DM
Sbjct: 673 -LRYAQLETTVGEIDRARAIYAHAAEISDPKVHVKFWDT----WKNFEVAHGNEATVRDM 727
Query: 401 ERTR 404
R R
Sbjct: 728 LRVR 731
Score = 173 (66.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 59/252 (23%), Positives = 113/252 (44%)
Query: 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR 145
RV + +W YA +EE R V+++ +E+ + + + YA +N++ A
Sbjct: 483 RVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAF 542
Query: 146 NVWDRAVTLL--PRVDQLWYKYI--HMEEMLGN-VAGARQIFERWMHWMPDQQG---WLS 197
+++ + L P V +W Y+ ++ G + AR +FE+ + P +L
Sbjct: 543 QAYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLL 602
Query: 198 YIKFELRYNEVERARQIYERFVQCHPKV---STWIKYAKFEMKMGEVDRARNVYERAVEK 254
Y K E + A IY R + S + Y K +M + + R ++ERA+ +
Sbjct: 603 YAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAISE 662
Query: 255 LADDEEAEQLFVAFAEFEERCKETERARCIYKFALD-HIPKGRAEDLYRKFVAFEKQYGD 313
L +D+ + + + +A+ E E +RAR IY A + PK + + + FE +G+
Sbjct: 663 LPEDK-SRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVK-FWDTWKNFEVAHGN 720
Query: 314 REGIEDAIVGKR 325
+ D + +R
Sbjct: 721 EATVRDMLRVRR 732
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/176 (25%), Positives = 86/176 (48%)
Query: 81 EDLIRRVRWNTGVWIKYAKWE-ESQKDFNRARSVWERALEVDYRNHTLW---LKYAEVEM 136
ED+IR + W +Y + +++ + ++ERAL V R++ LW LKY E +
Sbjct: 31 EDIIRNPT-SVNCWQRYIDHKLQNKSPAKQMFLIYERALAVFERSYKLWYHYLKYRESTI 89
Query: 137 KNKFI--NHAR---NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
NK N R + ++R + L ++ ++W Y + G + R++F+R + +P
Sbjct: 90 VNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPV 149
Query: 192 QQG---WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRA 244
Q W YI F ++ E ++Y R+++ +PK Y ++ ++ ++D A
Sbjct: 150 TQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKARE--DYVEYLIERDQIDEA 203
Score = 129 (50.5 bits), Expect = 7.0e-05, P = 6.9e-05
Identities = 54/227 (23%), Positives = 96/227 (42%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHT----LWLKYAEVEMKNKFINHARNVW 148
+WI AK E D + AR +E A+ + + +W YAE+EMK+K A V
Sbjct: 403 LWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVM 462
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
RA ++P+ Y +M+ + V H P W Y +E V
Sbjct: 463 QRAC-VVPKPGD----YENMQSVQARV-----------HRSPIL--WAMYADYEECCGTV 504
Query: 209 ERARQIYERFVQCHPKVSTWI-KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
E R++Y++ ++ I YA F + + A YE+ + +
Sbjct: 505 ESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTY 564
Query: 268 FAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312
+F +R K+ ERAR +++ L++ P A+ ++ + E+++G
Sbjct: 565 LVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHG 611
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 58/223 (26%), Positives = 95/223 (42%)
Query: 195 WLSYIKFELRYNEVERARQIYE-----RFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYE 249
W+ K +++ AR+ +E +F + W YA+ EMK A V +
Sbjct: 404 WIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQ 463
Query: 250 RA--VEKLADDEEAEQ----------LFVAFAEFEERCKETERARCIYKFALDHIPKGRA 297
RA V K D E + L+ +A++EE C E R +Y ++ + +
Sbjct: 464 RACVVPKPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIEL--RVAS 521
Query: 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ-YEDEVR--KNPMNYDIWFDY-IRLEESV 353
+ + F ++ E E A FQ YE + K P +DIW Y ++ +
Sbjct: 522 PQMIMNYAMFLEE---NEYFELA------FQAYEKGIALFKWPGVFDIWNTYLVKFIKRY 572
Query: 354 GNK--ERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEE 394
G K ERAR+++E+ + N PP K Y+++ YA EE
Sbjct: 573 GGKKLERARDLFEQCLENCPPTHAK-------YIFLLYAKLEE 608
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 191 (72.3 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 55/209 (26%), Positives = 100/209 (47%)
Query: 114 WERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173
+E+ L Y +W YAE +K+ + A V+ RA+ +P + L Y + MEE G
Sbjct: 255 YEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIKVFQRALKAIPDSEMLKYAFAEMEESRG 314
Query: 174 NVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYA 232
+ A++++E + + + Y++F R VE AR+ Y F+ S T+ Y
Sbjct: 315 AIQSAKKLYENILGASTNSLAHIQYLRFLRRAEGVEAARK-Y--FLDARKSPSCTYHVYI 371
Query: 233 KFEMKMGEVDR----ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288
F +D+ A N++E + KL E + +A+F R + R +++ A
Sbjct: 372 AFATMAFCIDKEPKVAHNIFEEGL-KLYMSEPV--YILKYADFLTRLNDDRNIRALFERA 428
Query: 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGI 317
L +P + +++++F+ FE+ YGD I
Sbjct: 429 LSTLPVEDSAEVWKRFIQFEQTYGDLASI 457
Score = 136 (52.9 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 71/297 (23%), Positives = 124/297 (41%)
Query: 109 RARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168
+A ++E+ L + + W +Y E +M + + ++ R + +V LW YI
Sbjct: 24 QATPIYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSRCLLTCLQVP-LWQCYIRF 82
Query: 169 EEMLGNVAGAR------QIFERWMHWMPDQ--QG--WLSYIKF-----ELRYNE-VERA- 211
+ + GA + FE ++++ G W YI F L NE + R
Sbjct: 83 IRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASGPIWTEYIAFLKSLPALNLNEDLHRKT 142
Query: 212 --RQIYERFV--QCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
R++Y R + H W Y FE N R + K +E + A
Sbjct: 143 ALRKVYHRAILTPTHHVEQLWKDYENFE----------NTVNRQLAKGLVNEYQPKFNSA 192
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRAED-----LYRKFVAFEKQYGDREGIEDAIV 322
A + ER K E I L P G +++ ++KF++FEK G+ + I+ A
Sbjct: 193 RAVYRERKKYIEE---IDWNMLAVPPTGTSKEETQWVAWKKFLSFEK--GNPQRIDTASS 247
Query: 323 GKRRFQYEDEVRKNPMNY-DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRY 378
KR ++ +Y D+W+DY G+ + A +V++RA+ +P +E +Y
Sbjct: 248 TKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIKVFQRALKAIPDSEMLKY 304
Score = 99 (39.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 43/200 (21%), Positives = 86/200 (43%)
Query: 187 HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMK--MGEVDRA 244
H+ PD W Y ++ ++ + A ++++R ++ P S +KYA EM+ G + A
Sbjct: 264 HY-PDV--WYDYAEWHVKSGSTDAAIKVFQRALKAIPD-SEMLKYAFAEMEESRGAIQSA 319
Query: 245 RNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKF 304
+ +YE + + + + F R + E AR K+ LD + Y +
Sbjct: 320 KKLYENILGASTNS----LAHIQYLRFLRRAEGVEAAR---KYFLD--ARKSPSCTYHVY 370
Query: 305 VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWF-DYIRLEESVGNKERAREVY 363
+AF + ++ V F+ E K M+ ++ Y + + R ++
Sbjct: 371 IAFATMAFCID--KEPKVAHNIFE---EGLKLYMSEPVYILKYADFLTRLNDDRNIRALF 425
Query: 364 ERAIANVPPAEEKRYWQRYI 383
ERA++ +P + W+R+I
Sbjct: 426 ERALSTLPVEDSAEVWKRFI 445
Score = 71 (30.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
I A ++++ ++L P + W +Y+ + + N +QIF R + W YI+
Sbjct: 22 IAQATPIYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSRCLLTCLQVPLWQCYIR 81
Query: 201 F 201
F
Sbjct: 82 F 82
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 195 (73.7 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 69/290 (23%), Positives = 127/290 (43%)
Query: 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ 160
E+ ++ + +S ER LE L + E M + +DR V P
Sbjct: 1565 EKPEQATQKKKSKKERELEKQKAEKEL-SRIEEALMDPGRQPESAEDFDRLVLSSPSSSL 1623
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKFELRYNEVERARQI 214
LW +Y+ + AR + ER + + +Q+ W++ + E Y E ++
Sbjct: 1624 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV 1683
Query: 215 YERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274
+ER VQ + + ++ A K + A +Y R +++ E+A ++V + F R
Sbjct: 1684 FERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQ-EKA--VWVKYGAFLLR 1740
Query: 275 CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334
+ E + + + AL+ +PK D+ KF E Q GD E + R +E +
Sbjct: 1741 RGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAE--------RARAIFESTLS 1792
Query: 335 KNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQRYI 383
P D+W YI + G+++ AR ++ER I ++ P K +++RY+
Sbjct: 1793 IYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFKRYL 1842
Score = 171 (65.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 55/262 (20%), Positives = 128/262 (48%)
Query: 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYA 132
++F+ L+ ++ +W++Y + + +AR+V ERAL+ + +R +W+
Sbjct: 1609 EDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALL 1668
Query: 133 EVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN---VAGARQIFERWM-HW 188
+E V++RAV + ++ ++H+ ++ A +++ R + +
Sbjct: 1669 NLENMYGSQESLTKVFERAV----QYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRF 1724
Query: 189 MPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRAR 245
++ W+ Y F LR + E + ++ +R ++C PK V K+A+ E ++G+ +RAR
Sbjct: 1725 RQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAR 1784
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI---PKGRAEDLYR 302
++E + + +++ KE AR I++ + H+ PK R + ++
Sbjct: 1785 AIFESTLSIYPKRTDVWSVYIDMIIKHGSQKE---ARAIFERVI-HLSLAPK-RMKFFFK 1839
Query: 303 KFVAFEKQYGDREGIEDAIVGK 324
+++ +EKQ+G + ++ A+ K
Sbjct: 1840 RYLDYEKQHGSEKDVQ-AVKAK 1860
Score = 147 (56.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 45/232 (19%), Positives = 98/232 (42%)
Query: 66 STELADYRLRKRKEFEDL-IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
+TE+ R + + + R + VW+ E V+ERA++ +
Sbjct: 1635 ATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN-EP 1693
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
++L A++ K++ A +++R + + +W KY G + ++ +R
Sbjct: 1694 LKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQR 1753
Query: 185 WMHWMPDQQGWLSYIKF---ELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGE 240
+ +P ++ KF E + + ERAR I+E + +PK W Y +K G
Sbjct: 1754 ALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWSVYIDMIIKHGS 1813
Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
AR ++ER + + + F + ++E++ + + + AL+++
Sbjct: 1814 QKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEYV 1865
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 195 (73.7 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 69/290 (23%), Positives = 127/290 (43%)
Query: 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ 160
E+ ++ + +S ER LE L + E M + +DR V P
Sbjct: 1565 EKPEQATQKKKSKKERELEKQKAEKEL-SRIEEALMDPGRQPESAEDFDRLVLSSPSSSL 1623
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKFELRYNEVERARQI 214
LW +Y+ + AR + ER + + +Q+ W++ + E Y E ++
Sbjct: 1624 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV 1683
Query: 215 YERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274
+ER VQ + + ++ A K + A +Y R +++ E+A ++V + F R
Sbjct: 1684 FERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQ-EKA--VWVKYGAFLLR 1740
Query: 275 CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334
+ E + + + AL+ +PK D+ KF E Q GD E + R +E +
Sbjct: 1741 RGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAE--------RARAIFESTLS 1792
Query: 335 KNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQRYI 383
P D+W YI + G+++ AR ++ER I ++ P K +++RY+
Sbjct: 1793 IYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFKRYL 1842
Score = 171 (65.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 55/262 (20%), Positives = 128/262 (48%)
Query: 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYA 132
++F+ L+ ++ +W++Y + + +AR+V ERAL+ + +R +W+
Sbjct: 1609 EDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALL 1668
Query: 133 EVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN---VAGARQIFERWM-HW 188
+E V++RAV + ++ ++H+ ++ A +++ R + +
Sbjct: 1669 NLENMYGSQESLTKVFERAV----QYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRF 1724
Query: 189 MPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRAR 245
++ W+ Y F LR + E + ++ +R ++C PK V K+A+ E ++G+ +RAR
Sbjct: 1725 RQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAR 1784
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI---PKGRAEDLYR 302
++E + + +++ KE AR I++ + H+ PK R + ++
Sbjct: 1785 AIFESTLSIYPKRTDVWSVYIDMIIKHGSQKE---ARAIFERVI-HLSLAPK-RMKFFFK 1839
Query: 303 KFVAFEKQYGDREGIEDAIVGK 324
+++ +EKQ+G + ++ A+ K
Sbjct: 1840 RYLDYEKQHGSEKDVQ-AVKAK 1860
Score = 147 (56.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 45/232 (19%), Positives = 98/232 (42%)
Query: 66 STELADYRLRKRKEFEDL-IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
+TE+ R + + + R + VW+ E V+ERA++ +
Sbjct: 1635 ATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN-EP 1693
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
++L A++ K++ A +++R + + +W KY G + ++ +R
Sbjct: 1694 LKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQR 1753
Query: 185 WMHWMPDQQGWLSYIKF---ELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGE 240
+ +P ++ KF E + + ERAR I+E + +PK W Y +K G
Sbjct: 1754 ALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWSVYIDMIIKHGS 1813
Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
AR ++ER + + + F + ++E++ + + + AL+++
Sbjct: 1814 QKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEYV 1865
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 192 (72.6 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 70/265 (26%), Positives = 126/265 (47%)
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYAE 133
EFE L+R ++ VWIKY + S D +ARS+ ERAL ++ R +W+ Y
Sbjct: 1635 EFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFN 1694
Query: 134 VEMK--NKFINHARNVWDRAVTLL-PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP 190
+E + N + V++RA P+ +++ + + E A ++ + +
Sbjct: 1695 LENEHGNPPEESVKKVFERARQYCDPK--KVYLALLGVYERTEQYKLADKLLDEMIKKFK 1752
Query: 191 DQ-QGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKY----AKFEMKMGEVDRAR 245
+ WL I+ L+ NE E + + R + C P+ IK+ A E K G DR R
Sbjct: 1753 QSCKIWLRKIQSSLKQNE-EAIQSVVNRALLCLPR-HKHIKFISQTAILEFKCGVADRGR 1810
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALD-HIPKGRAEDLYRKF 304
+++E L + + L+ + + E R E + R +++ A+ +P + + L++KF
Sbjct: 1811 SLFEGV---LREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKF 1867
Query: 305 VAFEKQYGDREGIEDAIVGKRRFQY 329
+ +EK GD E +E V +R +Y
Sbjct: 1868 LEYEKSVGDEERVE--YVKQRAMEY 1890
Score = 143 (55.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 56/264 (21%), Positives = 122/264 (46%)
Query: 114 WERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQ----LWYKYIHM 168
+E+ + + +W+KY + I AR++ +RA+ T+ R ++ +W Y ++
Sbjct: 1636 FEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNL 1695
Query: 169 EEMLGNVA--GARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK-V 225
E GN +++FER + ++ +L+ + R + + A ++ + ++ +
Sbjct: 1696 ENEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSC 1755
Query: 226 STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF-VAFAEFEERCKETERARCI 284
W++ + +K E + ++V RA+ L + + + A EF +C +R R +
Sbjct: 1756 KIWLRKIQSSLKQNE-EAIQSVVNRALLCLPRHKHIKFISQTAILEF--KCGVADRGRSL 1812
Query: 285 YKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWF 344
++ L PK DL+ ++ E + G ED ++ + F+ + P F
Sbjct: 1813 FEGVLREYPK--RTDLWSVYLDQEIRLG-----EDDVI-RSLFERAISLSLPPKKMKFLF 1864
Query: 345 D-YIRLEESVGNKERAREVYERAI 367
++ E+SVG++ER V +RA+
Sbjct: 1865 KKFLEYEKSVGDEERVEYVKQRAM 1888
Score = 133 (51.9 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 64/275 (23%), Positives = 123/275 (44%)
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG------WLSYIKF 201
+++ V P +W KY+ L ++ AR I ER + + ++ W++Y
Sbjct: 1636 FEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNL 1695
Query: 202 ELRYNEV--ERARQIYERFVQ-CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADD 258
E + E ++++ER Q C PK ++ +G +R Y+ A +KL D+
Sbjct: 1696 ENEHGNPPEESVKKVFERARQYCDPK-KVYLAL------LGVYERTEQ-YKLA-DKLLDE 1746
Query: 259 ---EEAEQLFVAFAEFEERCKETERA-RCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDR 314
+ + + + + K+ E A + + AL +P+ + + KF++ +
Sbjct: 1747 MIKKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRALLCLPRHK----HIKFISQTAILEFK 1802
Query: 315 EGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIA-NVPPA 373
G+ D + R +E +R+ P D+W Y+ E +G + R ++ERAI+ ++PP
Sbjct: 1803 CGVAD----RGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPK 1858
Query: 374 EEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
+ K +L+ + YE+ GD ER V Q
Sbjct: 1859 KMK-------FLFKKFLEYEK-SVGDEERVEYVKQ 1885
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 190 (71.9 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 67/290 (23%), Positives = 128/290 (44%)
Query: 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ 160
+E + + +S ER LE L + E M + + +DR V P
Sbjct: 1550 DEKPEQATKKKSKKERELEKQKAEKEL-SRLEEALMDPGRQPESADDFDRLVLSSPNSSI 1608
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKFELRYNEVERARQI 214
LW +Y+ + AR + ER + + +Q+ W++ + E Y E ++
Sbjct: 1609 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV 1668
Query: 215 YERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274
+ER VQ + + ++ A K + A +Y R +++ E+A +++ + F R
Sbjct: 1669 FERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQ-EKA--VWIKYGAFLLR 1725
Query: 275 CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334
+ + + + AL+ +PK D+ KF E Q GD E + AI +E+ +
Sbjct: 1726 RGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAK-AI-------FENTLS 1777
Query: 335 KNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQRYI 383
P D+W YI + G+++ R+++ER I ++ P K +++RY+
Sbjct: 1778 TYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYL 1827
Score = 156 (60.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 52/261 (19%), Positives = 125/261 (47%)
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYAE 133
+F+ L+ ++ +W++Y + + +AR+V ERAL+ + +R +W+
Sbjct: 1595 DFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN 1654
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN---VAGARQIFERWM-HWM 189
+E V++RAV + ++ ++H+ ++ A +++ R + +
Sbjct: 1655 LENMYGSQESLTKVFERAV----QYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFR 1710
Query: 190 PDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARN 246
++ W+ Y F LR + + ++ +R ++C PK V K+A+ E ++G+ +RA+
Sbjct: 1711 QEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAKA 1770
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI---PKGRAEDLYRK 303
++E + + +++ KE R I++ + H+ PK R + +++
Sbjct: 1771 IFENTLSTYPKRTDVWSVYIDMIIKHGSQKEV---RDIFERVI-HLSLAPK-RMKFFFKR 1825
Query: 304 FVAFEKQYGDREGIEDAIVGK 324
++ +EKQ+G + ++ A+ K
Sbjct: 1826 YLDYEKQHGTEKDVQ-AVKAK 1845
Score = 144 (55.7 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 43/232 (18%), Positives = 98/232 (42%)
Query: 66 STELADYRLRKRKEFEDL-IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
+TE+ R + + + R + VW+ E V+ERA++ +
Sbjct: 1620 ATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN-EP 1678
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
++L A++ K++ A +++R + + +W KY G + ++ +R
Sbjct: 1679 LKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQR 1738
Query: 185 WMHWMPDQQGWLSYIKF---ELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGE 240
+ +P ++ KF E + + ERA+ I+E + +PK W Y +K G
Sbjct: 1739 ALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGS 1798
Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
R+++ER + + + F + ++E++ + + + AL+++
Sbjct: 1799 QKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1850
Score = 131 (51.2 bits), Expect = 0.00010, P = 0.00010
Identities = 49/197 (24%), Positives = 89/197 (45%)
Query: 78 KEFEDLIRRVRWNTG--VWIKYAK-WEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV 134
K FE R V++N V++ A + +S+K F A ++ R L+ + +W+KY
Sbjct: 1667 KVFE---RAVQYNEPLKVFLHLADIYTKSEK-FQEAGELYNRMLKRFRQEKAVWIKYGAF 1722
Query: 135 EMKNKFINHARNVWDRAVTLLPR---VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
++ + V RA+ LP+ VD + K+ +E LG+ A+ IFE + P
Sbjct: 1723 LLRRGQAGASHRVMQRALECLPKKEHVDVI-AKFAQLEFQLGDAERAKAIFENTLSTYPK 1781
Query: 192 QQG-WLSYIKFELRYNEVERARQIYERFVQCH--PKVSTWI--KYAKFEMKMGEVDRARN 246
+ W YI +++ + R I+ER + PK + +Y +E + G +
Sbjct: 1782 RTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQA 1841
Query: 247 VYERAVEKLADDEEAEQ 263
V +A+E + E+
Sbjct: 1842 VKAKALEYVEAKSSLEE 1858
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 189 (71.6 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 67/290 (23%), Positives = 129/290 (44%)
Query: 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ 160
E+ ++ + +S ER LE L + E M + + +DR V P
Sbjct: 1567 EKPEQATQKKKSKKERELEKQKAEKEL-SRLEEALMDPGRQPESADDFDRLVLSSPNSSI 1625
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKFELRYNEVERARQI 214
LW +Y+ + AR + ER + + +Q+ W++ + E Y E ++
Sbjct: 1626 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV 1685
Query: 215 YERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274
+ER VQ + + ++ A K + A +Y R +++ E+A +++ + F R
Sbjct: 1686 FERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQ-EKA--VWIKYGAFLLR 1742
Query: 275 CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334
+ + + + AL+ +PK D+ KF E Q GD E + AI +E+ +
Sbjct: 1743 RGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAK-AI-------FENTLS 1794
Query: 335 KNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQRYI 383
P D+W YI + G+++ R+++ER I ++ P K +++RY+
Sbjct: 1795 TYPKRTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYL 1844
Score = 156 (60.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 52/261 (19%), Positives = 125/261 (47%)
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYAE 133
+F+ L+ ++ +W++Y + + +AR+V ERAL+ + +R +W+
Sbjct: 1612 DFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN 1671
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN---VAGARQIFERWM-HWM 189
+E V++RAV + ++ ++H+ ++ A +++ R + +
Sbjct: 1672 LENMYGSQESLTKVFERAV----QYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFR 1727
Query: 190 PDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARN 246
++ W+ Y F LR + + ++ +R ++C PK V K+A+ E ++G+ +RA+
Sbjct: 1728 QEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAKA 1787
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI---PKGRAEDLYRK 303
++E + + +++ KE R I++ + H+ PK R + +++
Sbjct: 1788 IFENTLSTYPKRTDVWSVYIDMIIKHGSQKEV---RDIFERVI-HLSLAPK-RMKFFFKR 1842
Query: 304 FVAFEKQYGDREGIEDAIVGK 324
++ +EKQ+G + ++ A+ K
Sbjct: 1843 YLDYEKQHGTEKDVQ-AVKAK 1862
Score = 144 (55.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 43/232 (18%), Positives = 98/232 (42%)
Query: 66 STELADYRLRKRKEFEDL-IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
+TE+ R + + + R + VW+ E V+ERA++ +
Sbjct: 1637 ATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN-EP 1695
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
++L A++ K++ A +++R + + +W KY G + ++ +R
Sbjct: 1696 LKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQR 1755
Query: 185 WMHWMPDQQGWLSYIKF---ELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGE 240
+ +P ++ KF E + + ERA+ I+E + +PK W Y +K G
Sbjct: 1756 ALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGS 1815
Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
R+++ER + + + F + ++E++ + + + AL+++
Sbjct: 1816 QKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1867
Score = 131 (51.2 bits), Expect = 0.00011, P = 0.00011
Identities = 49/197 (24%), Positives = 89/197 (45%)
Query: 78 KEFEDLIRRVRWNTG--VWIKYAK-WEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV 134
K FE R V++N V++ A + +S+K F A ++ R L+ + +W+KY
Sbjct: 1684 KVFE---RAVQYNEPLKVFLHLADIYTKSEK-FQEAGELYNRMLKRFRQEKAVWIKYGAF 1739
Query: 135 EMKNKFINHARNVWDRAVTLLPR---VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
++ + V RA+ LP+ VD + K+ +E LG+ A+ IFE + P
Sbjct: 1740 LLRRGQAGASHRVMQRALECLPKKEHVDVI-AKFAQLEFQLGDAERAKAIFENTLSTYPK 1798
Query: 192 QQG-WLSYIKFELRYNEVERARQIYERFVQCH--PKVSTWI--KYAKFEMKMGEVDRARN 246
+ W YI +++ + R I+ER + PK + +Y +E + G +
Sbjct: 1799 RTDVWSVYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQA 1858
Query: 247 VYERAVEKLADDEEAEQ 263
V +A+E + E+
Sbjct: 1859 VKAKALEYVEAKSSLEE 1875
>DICTYBASE|DDB_G0272374 [details] [associations]
symbol:prpf6 "pre-mRNA processing factor 6"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA;ISS] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=ISS] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF06424 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0272374
GenomeReviews:CM000151_GR eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AAFI02000008 GO:GO:0000398 GO:GO:0046540 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_645169.1
ProteinModelPortal:Q55A15 STRING:Q55A15 EnsemblProtists:DDB0233221
GeneID:8618341 KEGG:ddi:DDB_G0272374 InParanoid:Q55A15
ProtClustDB:CLSZ2729243 Uniprot:Q55A15
Length = 1014
Score = 155 (59.6 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 41/184 (22%), Positives = 89/184 (48%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ A+ S+ A +++ L + ++WLK A++E ++ ++A
Sbjct: 538 IWVIDAEECLSRGSIKTANAIYAHILSIFPTKKSVWLKVAQLEKQHGTKETLDQTLEKAT 597
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERA 211
P+ + LW Y + + G+VA AR+I + + P + W++ +K E NE+ A
Sbjct: 598 QKCPQYENLWLMYAKEKWISGDVAKAREILAQAFKFNPGSENIWVAAVKIESEMNELRAA 657
Query: 212 RQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRAR-NVYERAVEKLADDEEAEQLFVAFAE 270
R + ++ + W+K A E ++G + ++ E+ ++K + + +L++ A+
Sbjct: 658 RNLLKKAREIAGTERIWMKSALLERELGGDQKLELSLIEQGLQKYPN---SFKLWLMKAQ 714
Query: 271 FEER 274
EER
Sbjct: 715 LEER 718
Score = 152 (58.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 65/301 (21%), Positives = 130/301 (43%)
Query: 78 KEFEDLIRRVRWNTG---VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV 134
K E L + ++N G +W+ K E + AR++ ++A E+ +W+K A +
Sbjct: 622 KAREILAQAFKFNPGSENIWVAAVKIESEMNELRAARNLLKKAREIA-GTERIWMKSALL 680
Query: 135 EMKNKFINHAR-NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR--QIFERWMHWMPD 191
E + ++ ++ + P +LW +EE +A + Q + + +
Sbjct: 681 ERELGGDQKLELSLIEQGLQKYPNSFKLWLMKAQLEERQA-IANHQNNQNNQNNQNNQNN 739
Query: 192 QQGWLSYIKFELRYNEVERARQIYERF-VQCHPKVSTWIKYAKFEMKMGEVDRARNVYER 250
Q + ++ ++ +E RQ Y+ V+C S WI+ ++FE + +RAR + E+
Sbjct: 740 QNNQNNNLQ-QISLTSIEIIRQTYKNATVKCPNNGSVWIEASRFEKRNQNFNRARALLEQ 798
Query: 251 AVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310
A K D++ +F+ F FE+ ++A I + PK + L+ + +A E +
Sbjct: 799 AKLKNPTDDD---IFLEFVRFEDSLGNRKQAATILALGIQASPK--SGKLWAELIAMEPR 853
Query: 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANV 370
+ R DA+ R + V ++ W D G ++A++ Y+R
Sbjct: 854 HSQRNKCVDAL---NRCNNDPYVFTQ-VSKIFWMD--------GKLDKAKQWYQRVTTTF 901
Query: 371 P 371
P
Sbjct: 902 P 902
Score = 152 (58.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 70/304 (23%), Positives = 125/304 (41%)
Query: 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167
+ A+ V +A+ V + +WL A +E + K + V RA+ +P +LW + +
Sbjct: 351 DNAKIVLAQAVRVIPHSVKIWLYAANLEKQLKM---KKRVLRRALEFIPTSVKLWKEAVE 407
Query: 168 MEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQCHPKVS 226
+EE AR + R + +PD WL+ E Y E+AR++ + Q P S
Sbjct: 408 LEEP----EDARILLGRAVECVPDNIDLWLALANLET-Y---EKAREVLNKARQALPSSS 459
Query: 227 T-WIKYAKFEMKMGEVDRARNVYERAVEKLAD---DEEAEQLFVAFAEFEERCKETERAR 282
WI A+ E G+ D + ++A++ L + ++A AE E K
Sbjct: 460 EIWISAAQLEESQGKNDNVNKIIKKAIKSLCSGVMNVMNRDKWIAEAEKSE--KNQYYVT 517
Query: 283 CIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
C + I G +D ++ + + E + + Y + P +
Sbjct: 518 C-QAIIYETIGMGIEDDDRKRIWVIDAE----ECLSRGSIKTANAIYAHILSIFPTKKSV 572
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMER 402
W +LE+ G KE + E+A P +Y LW+ YA E+ +GD+ +
Sbjct: 573 WLKVAQLEKQHGTKETLDQTLEKATQKCP---------QYENLWLMYAK-EKWISGDVAK 622
Query: 403 TRDV 406
R++
Sbjct: 623 AREI 626
Score = 135 (52.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 67/300 (22%), Positives = 122/300 (40%)
Query: 84 IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINH 143
+R + + +W+ A E K + V RALE + LW + E+E
Sbjct: 361 VRVIPHSVKIWLYAANLE---KQLKMKKRVLRRALEFIPTSVKLWKEAVELEEPED---- 413
Query: 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFE 202
AR + RAV +P LW ++E AR++ + +P W+S + E
Sbjct: 414 ARILLGRAVECVPDNIDLWLALANLE----TYEKAREVLNKARQALPSSSEIWISAAQLE 469
Query: 203 LRYNEVERARQIYERFVQ--CHPKVST-----WIKYA-KFEMKMGEVDRARNVYERAVEK 254
+ + +I ++ ++ C ++ WI A K E V +YE
Sbjct: 470 ESQGKNDNVNKIIKKAIKSLCSGVMNVMNRDKWIAEAEKSEKNQYYVTCQAIIYETIGMG 529
Query: 255 LADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDR 314
+ DD+ ++++V AE + A IY L P ++ ++ K EKQ+G +
Sbjct: 530 IEDDDR-KRIWVIDAEECLSRGSIKTANAIYAHILSIFPTKKS--VWLKVAQLEKQHGTK 586
Query: 315 EGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAE 374
E ++ + E +K P ++W Y + + G+ +ARE+ +A P +E
Sbjct: 587 ETLDQTL--------EKATQKCPQYENLWLMYAKEKWISGDVAKAREILAQAFKFNPGSE 638
Score = 126 (49.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 54/249 (21%), Positives = 111/249 (44%)
Query: 61 QKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV 120
++I E+ D + + R F+ ++ WI AK E AR + +A +
Sbjct: 275 KRIASDAEVGDIK-KARLLFKSATTSNPKHSPSWIAAAKLEVLAGKIVDARKIIAQACKE 333
Query: 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ 180
+ +W++ A ++ + +A+ V +AV ++P ++W ++E+ L ++
Sbjct: 334 CPTSEEVWIENANLQTPD----NAKIVLAQAVRVIPHSVKIWLYAANLEKQLKM---KKR 386
Query: 181 IFERWMHWMPDQ-QGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKM 238
+ R + ++P + W ++ E E E AR + R V+C P + W+ A E
Sbjct: 387 VLRRALEFIPTSVKLWKEAVELE----EPEDARILLGRAVECVPDNIDLWLALANLET-- 440
Query: 239 GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 298
++AR V +A + L E ++++ A+ EE + + I K A+ + G
Sbjct: 441 --YEKAREVLNKARQALPSSSE---IWISAAQLEESQGKNDNVNKIIKKAIKSLCSGVMN 495
Query: 299 DLYR-KFVA 306
+ R K++A
Sbjct: 496 VMNRDKWIA 504
Score = 125 (49.1 bits), Expect = 0.00023, P = 0.00023
Identities = 37/176 (21%), Positives = 77/176 (43%)
Query: 111 RSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170
R ++ A N ++W++ + E +N+ N AR + ++A P D ++ +++ E+
Sbjct: 759 RQTYKNATVKCPNNGSVWIEASRFEKRNQNFNRARALLEQAKLKNPTDDDIFLEFVRFED 818
Query: 171 MLGNVAGARQIFERWMHWMPDQ-QGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWI 229
LGN A I + P + W I E R+++ + R C+ +
Sbjct: 819 SLGNRKQAATILALGIQASPKSGKLWAELIAMEPRHSQRNKCVDALNR---CNNDPYVFT 875
Query: 230 KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA-EFEERCKETERARCI 284
+ +K G++D+A+ Y+R + + + AF +FE K+ +C+
Sbjct: 876 QVSKIFWMDGKLDKAKQWYQRVTTTFPEFGDGWAYYYAFILKFEPENKDQILKKCV 931
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 45/225 (20%), Positives = 97/225 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W+ YAK + D +AR + +A + + + +W+ ++E + + ARN+ +A
Sbjct: 606 LWLMYAKEKWISGDVAKAREILAQAFKFNPGSENIWVAAVKIESEMNELRAARNLLKKAR 665
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGAR-QIFERWMHWMPDQ-QGWLSYIKFELRYNEVER 210
+ +++W K +E LG + E+ + P+ + WL + E R
Sbjct: 666 EIAG-TERIWMKSALLERELGGDQKLELSLIEQGLQKYPNSFKLWLMKAQLEERQAIANH 724
Query: 211 ARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE 270
+ Q + ++ + ++ R Y+ A K ++ +++ +
Sbjct: 725 QNNQNNQNNQNNQNNQNNQNNNLQQISLTSIEIIRQTYKNATVKCPNNGS---VWIEASR 781
Query: 271 FEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDRE 315
FE+R + RAR + + A P +D++ +FV FE G+R+
Sbjct: 782 FEKRNQNFNRARALLEQAKLKNPTD--DDIFLEFVRFEDSLGNRK 824
Score = 77 (32.2 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 324 KRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
+ R E KNP + DI+ +++R E+S+GN+++A + I P + + W I
Sbjct: 791 RARALLEQAKLKNPTDDDIFLEFVRFEDSLGNRKQAATILALGIQASP--KSGKLWAELI 848
Score = 60 (26.2 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 326 RFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375
R Y++ K P N +W + R E+ N RAR + E+A P ++
Sbjct: 759 RQTYKNATVKCPNNGSVWIEASRFEKRNQNFNRARALLEQAKLKNPTDDD 808
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 185 (70.2 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 57/243 (23%), Positives = 111/243 (45%)
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKF 201
+DR V P LW +Y+ + AR + ER + + +Q+ W++ +
Sbjct: 1608 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1667
Query: 202 ELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261
E Y E +++ER VQ + + ++ A K + A +Y R +++ E+A
Sbjct: 1668 ENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQ-EKA 1726
Query: 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
+++ + F R + + + + AL+ +P D+ KF E Q GD E + AI
Sbjct: 1727 --VWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAK-AI 1783
Query: 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQ 380
+E+ + P D+W YI + G+++ R+++ER I ++ P K +++
Sbjct: 1784 -------FENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFK 1836
Query: 381 RYI 383
RY+
Sbjct: 1837 RYL 1839
Score = 154 (59.3 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 50/261 (19%), Positives = 127/261 (48%)
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYAE 133
+F+ L+ ++ +W++Y + + +AR+V ERAL+ + +R +W+
Sbjct: 1607 DFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN 1666
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN---VAGARQIFERWM-HWM 189
+E V++RAV + ++ ++H+ ++ A +++ R + +
Sbjct: 1667 LENMYGSQESLTKVFERAV----QYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFR 1722
Query: 190 PDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARN 246
++ W+ Y F LR ++ + ++ +R ++C P V K+A+ E ++G+ +RA+
Sbjct: 1723 QEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKA 1782
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI---PKGRAEDLYRK 303
++E L+ + ++ + + + + R I++ + H+ PK R + +++
Sbjct: 1783 IFENT---LSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVI-HLSLAPK-RMKFFFKR 1837
Query: 304 FVAFEKQYGDREGIEDAIVGK 324
++ +EKQ+G + ++ A+ K
Sbjct: 1838 YLDYEKQHGTEKDVQ-AVKAK 1857
Score = 143 (55.4 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 43/232 (18%), Positives = 98/232 (42%)
Query: 66 STELADYRLRKRKEFEDL-IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
+TE+ R + + + R + VW+ E V+ERA++ +
Sbjct: 1632 ATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN-EP 1690
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
++L A++ K++ A +++R + + +W KY A + ++ +R
Sbjct: 1691 LKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQR 1750
Query: 185 WMHWMPDQQGWLSYIKF---ELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGE 240
+ +P ++ KF E + + ERA+ I+E + +PK W Y +K G
Sbjct: 1751 ALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGS 1810
Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
R+++ER + + + F + ++E++ + + + AL+++
Sbjct: 1811 QKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1862
>TAIR|locus:2086132 [details] [associations]
symbol:HCF107 "high chlorophyll fluorescent 107"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;IMP]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0006417 "regulation
of translation" evidence=RCA;IMP] [GO:0009657 "plastid
organization" evidence=RCA;IMP] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005774 EMBL:CP002686 GO:GO:0006417
GO:GO:0009941 GO:GO:0006396 GO:GO:0009657 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 EMBL:AY093112 EMBL:BT008405
IPI:IPI00517465 RefSeq:NP_188329.1 UniGene:At.22706
ProteinModelPortal:Q8RWG2 SMR:Q8RWG2 STRING:Q8RWG2 PaxDb:Q8RWG2
PRIDE:Q8RWG2 EnsemblPlants:AT3G17040.1 GeneID:820961
KEGG:ath:AT3G17040 TAIR:At3g17040 eggNOG:NOG300398
InParanoid:Q8RWG2 OMA:MEWKEGN PhylomeDB:Q8RWG2
ProtClustDB:CLSN2684191 ArrayExpress:Q8RWG2 Genevestigator:Q8RWG2
Uniprot:Q8RWG2
Length = 652
Score = 176 (67.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 57/246 (23%), Positives = 111/246 (45%)
Query: 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149
N ++ A E + +AR ++++A + R+ WL +A++E++ + AR +++
Sbjct: 304 NEYIYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFE 363
Query: 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKF-ELRYNEV 208
+AV P+ W+ + E +GNV R++ + P L + E +++
Sbjct: 364 KAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSA 423
Query: 209 ERARQIYERFVQCHPKVS-TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
AR + R + P+ WI + E K G AR +Y+RA+ A+ E A + A
Sbjct: 424 NLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESASRCLQA 483
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327
+ E+R AR +++ +L+ ++ + + E+ GD E E+ + F
Sbjct: 484 WGVLEQRAGNLSAARRLFRSSLNI--NSQSYVTWMTWAQLEEDQGDTERAEE--IRNLYF 539
Query: 328 QYEDEV 333
Q EV
Sbjct: 540 QQRTEV 545
Score = 175 (66.7 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 70/319 (21%), Positives = 134/319 (42%)
Query: 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149
N+ +W +A E + RAR +++ A D ++ W +A +E+K I+ ARN+
Sbjct: 236 NSYIWQCWAVLENRLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLA 295
Query: 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQ-QGWLSYIKFELRYNEV 208
+ + R + ++ +E G AR +F++ WL++ + E++
Sbjct: 296 KGLKFCGRNEYIYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERY 355
Query: 209 ERARQIYERFVQCHPKVS-TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267
AR+++E+ VQ PK W + FE +G V+R R + + + + + L +
Sbjct: 356 PAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLK--IGHALNPRDPV-LLQS 412
Query: 268 FAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327
E + AR + + A + P R + ++ + E + G+ + +R
Sbjct: 413 LGLLEYKHSSANLARALLRRASELDP--RHQPVWIAWGWMEWKEGNTTTARELY--QRAL 468
Query: 328 QYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWI 387
+ W LE+ GN AR ++ R+ N+ Q Y+ W+
Sbjct: 469 SIDANTESASRCLQAWGV---LEQRAGNLSAARRLF-RSSLNINS-------QSYV-TWM 516
Query: 388 NYALYEELDAGDMERTRDV 406
+A EE D GD ER ++
Sbjct: 517 TWAQLEE-DQGDTERAEEI 534
Score = 167 (63.8 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 58/278 (20%), Positives = 124/278 (44%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALE-VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
++ K Q AR ++E+ + N +W +A +E + + AR ++D A
Sbjct: 205 YVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLGNVRRARELFDAAT 264
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKFELRYNEVERA 211
+ W+ + ++E GN++ AR + + + + ++ + + E + E+A
Sbjct: 265 VADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLALLEAKAGRYEQA 324
Query: 212 RQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE 270
R ++++ C+ + ++W+ +A+ E++ AR ++E+AV+ + A ++
Sbjct: 325 RYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRFAWHVW---GV 381
Query: 271 FEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYE 330
FE ER R + K + H R L + E ++ + A++ RR
Sbjct: 382 FEAGVGNVERGRKLLK--IGHALNPRDPVLLQSLGLLEYKHSSAN-LARALL--RRASEL 436
Query: 331 DEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIA 368
D P + +W + +E GN ARE+Y+RA++
Sbjct: 437 D-----PRHQPVWIAWGWMEWKEGNTTTARELYQRALS 469
Score = 166 (63.5 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 68/290 (23%), Positives = 120/290 (41%)
Query: 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV 134
R R+ F+ + + W +A E Q + ++AR++ + L+ RN ++ A +
Sbjct: 255 RARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLALL 314
Query: 135 EMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQ- 193
E K AR ++ +A R W + +E AR++FE+ + P +
Sbjct: 315 EAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRF 374
Query: 194 GWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIK-YAKFEMKMGEVDRARNVYERAV 252
W + FE VER R++ + +P+ ++ E K + AR + RA
Sbjct: 375 AWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRRAS 434
Query: 253 EKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312
E D + +++A+ E + T AR +Y+ AL E R A +G
Sbjct: 435 EL---DPRHQPVWIAWGWMEWKEGNTTTARELYQRALSI--DANTESASRCLQA----WG 485
Query: 313 DREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREV 362
E + RR + + N +Y W + +LEE G+ ERA E+
Sbjct: 486 VLEQRAGNLSAARRL-FRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEI 534
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 45/190 (23%), Positives = 85/190 (44%)
Query: 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEM 136
RK FE ++ N W + +E + R R + + ++ R+ L +E
Sbjct: 359 RKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEY 418
Query: 137 KNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWL 196
K+ N AR + RA L PR +W + ME GN AR++++R + + +
Sbjct: 419 KHSSANLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESAS 478
Query: 197 SYIK----FELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRA---RNVY 248
++ E R + AR+++ + + + TW+ +A+ E G+ +RA RN+Y
Sbjct: 479 RCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLY 538
Query: 249 ERAVEKLADD 258
+ ++ DD
Sbjct: 539 FQQRTEVVDD 548
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 178 (67.7 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 60/292 (20%), Positives = 133/292 (45%)
Query: 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNV-WDRAVTLLPRVD 159
EE K +S + L+ + +N L E E+ + + + ++R + P
Sbjct: 1507 EEEVKSKPAKKS--RKELKQEQQNTEQKLSKLEAELMDTSVRPDNSTAFERLLLSSPDSS 1564
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKFELRYNEVERARQ 213
LW +Y+ + AR + ER + + +Q+ W++ + E Y + ++
Sbjct: 1565 LLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQK 1624
Query: 214 IYERFVQ-CHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
++ER +Q C P + + + A K ++ A ++Y+ V++ D+ +++++ F
Sbjct: 1625 VFERAIQYCEPLL-VYQQLADIYAKSEKIKEAESLYKSMVKRFRQDKA---VYLSYGTFL 1680
Query: 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
R ++++ A + + AL + DL +F E Q+G+ E K + ++
Sbjct: 1681 LRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFGNSE--------KAKSMFDKV 1732
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQRYI 383
+ P D+W +I L G+++ RE+++R I +V + K +++RY+
Sbjct: 1733 LTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFFKRYL 1784
Score = 125 (49.1 bits), Expect = 0.00046, P = 0.00046
Identities = 56/286 (19%), Positives = 130/286 (45%)
Query: 60 KQKITD-STELADYRLRKRKE--FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWER 116
+QK++ EL D +R FE L+ ++ +W++Y + +AR+V ER
Sbjct: 1530 EQKLSKLEAELMDTSVRPDNSTAFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAER 1589
Query: 117 ALE-VDYRNH----TLWLKYAEVEMKNKFINHARNVWDRAVTLL-PRV--DQLWYKYIHM 168
AL+ + +R +W+ +E + + V++RA+ P + QL Y
Sbjct: 1590 ALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQKVFERAIQYCEPLLVYQQLADIYAKS 1649
Query: 169 EEMLGNVAGARQIFERWM-HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQC---HPK 224
E+ + A +++ + + D+ +LSY F LR + + A + +R +Q
Sbjct: 1650 EK----IKEAESLYKSMVKRFRQDKAVYLSYGTFLLRQRQSDAANALLQRALQSLSSKEH 1705
Query: 225 VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCI 284
V ++A+ E + G ++A++++++ L + L+ F + + + R +
Sbjct: 1706 VDLIARFARLEFQFGNSEKAKSMFDKV---LTTYPKRTDLWSVFIDLMVKHGSQKEVREL 1762
Query: 285 YKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329
+ + + + + +++++ +EK+ G E I+ +V ++ +Y
Sbjct: 1763 FDRVIHLSVSVKKIKFFFKRYLEYEKKNGTPETIQ--VVKQKALEY 1806
>RGD|1308702 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
Length = 664
Score = 137 (53.3 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 69/264 (26%), Positives = 118/264 (44%)
Query: 71 DYRLRKRKEFEDLIRRVRWNTGV--------WIKYAKWEESQKDFNRARSVWERALEVDY 122
++ + KR FE+ I+R ++ W +Y ++E R ++ER +
Sbjct: 322 EHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA 381
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQI 181
W+KYA+ M+N I R+V+ RA T+ LP+ + EE GN+ AR I
Sbjct: 382 LYEEFWIKYAKY-MENHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARII 440
Query: 182 ---FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYE---RFVQCHPKVSTW-IKYAKF 234
FE + + + L + E R+ +E A + + R + + + S + IK A+
Sbjct: 441 LRTFEECVLGLAMVR--LRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLARH 498
Query: 235 EMKMGE-VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC--KETER--ARCIYKFAL 289
K+ + + ++R V A+EK D+E +L++ E E C K+ E C K
Sbjct: 499 LFKIQKNLPKSRKVLLEAIEK---DKENTKLYLNLLEMEYSCDLKQNEENILNCFDKAIH 555
Query: 290 DHIP-KGRAEDLYRKFVAFEKQYG 312
+P K R RK V F + +G
Sbjct: 556 GSLPIKMRITFSQRK-VEFLEDFG 578
Score = 121 (47.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 50/181 (27%), Positives = 81/181 (44%)
Query: 193 QGWLSYIKFELRYNEVERARQIYERFV-QCHPKVSTWIKYAKFEMKMGEVDRARNVYERA 251
+ W Y++FE+ ER ++ER V C WIKYAK+ M+ ++ R+V+ RA
Sbjct: 351 KNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKY-MENHSIEGVRHVFSRA 409
Query: 252 VE-KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310
L A L+ AF E + E AR I + + G A R+ V+ E++
Sbjct: 410 CTVHLPKKPMAHMLWAAFEEQQGNINE---ARIILR-TFEECVLGLAMVRLRR-VSLERR 464
Query: 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESV----GNKERAREVYERA 366
+G+ E E + +D +R N + F I+L + N ++R+V A
Sbjct: 465 HGNMEEAEHLL--------QDAIRNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 516
Query: 367 I 367
I
Sbjct: 517 I 517
Score = 103 (41.3 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 39/170 (22%), Positives = 74/170 (43%)
Query: 68 ELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL 127
E ++ + RK F+ + G W KYA E+ + ++ V+ R L+ + L
Sbjct: 103 EQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDL 162
Query: 128 WLKYAE-----VEMKNKFINHA-RNVWDRAVTLLP---RVDQLWYKYIHMEEMLGNVAGA 178
W+ Y ++ + N R ++ AV R D+LW YI+ E GN+
Sbjct: 163 WIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREV 222
Query: 179 RQIFERWMHWMPDQQGWLSYIKF-ELRYNEVERARQIYERFVQCHPKVST 227
+++R + +P Q + +F E N + R E+F+Q ++++
Sbjct: 223 TAVYDRILG-IPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELAS 271
Score = 102 (41.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 42/157 (26%), Positives = 72/157 (45%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
++ W +Y +FE++ G +R ++ER V A EE ++ +A++ E E R
Sbjct: 349 QLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE---FWIKYAKYMEN-HSIEGVRH 404
Query: 284 IYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
++ A H+PK + + AFE+Q G+ I +A + R F E+ V M +
Sbjct: 405 VFSRACTVHLPKKPMAHML--WAAFEEQQGN---INEARIILRTF--EECVLGLAM---V 454
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ LE GN E A + + AI N E ++
Sbjct: 455 RLRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFY 491
Score = 95 (38.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 38/157 (24%), Positives = 69/157 (43%)
Query: 79 EFEDLIRRVRWN----TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAE 133
EFE + V N TG W+ ++ E + AR +++ + Y + W KYA+
Sbjct: 77 EFEKFWKTVETNPQDFTG-WVYLLQYVEQENHLMAARKAFDKFF-IHYPYCYGYWKKYAD 134
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH-MEEML--GNV---AGARQIFERWM- 186
+E ++ I + V+ R + +P LW YI+ ++E L G+ + R FE +
Sbjct: 135 LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVL 194
Query: 187 ----HWMPDQQGWLSYIKFELRYNEVERARQIYERFV 219
+ D+ W YI +E + +Y+R +
Sbjct: 195 AAGTDFRSDKL-WEMYINWENEQGNLREVTAVYDRIL 230
Score = 86 (35.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 34/149 (22%), Positives = 60/149 (40%)
Query: 114 WERALEVDYRNHTLWLKYAE-VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172
W + +E + ++ T W+ + VE +N + AR +D+ P W KY +E+
Sbjct: 82 W-KTVETNPQDFTGWVYLLQYVEQENHLMA-ARKAFDKFFIHYPYCYGYWKKYADLEKRH 139
Query: 173 GNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEVERARQIYERFVQCHPKVST- 227
N+ + +++ R + +P W+ YI F L + E I F T
Sbjct: 140 DNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTD 199
Query: 228 ------WIKYAKFEMKMGEVDRARNVYER 250
W Y +E + G + VY+R
Sbjct: 200 FRSDKLWEMYINWENEQGNLREVTAVYDR 228
Score = 60 (26.2 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 26/100 (26%), Positives = 41/100 (41%)
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E + R E+ I KR + + + K + W +Y+ E G ER ++ER +
Sbjct: 322 EHEVSKRWTFEEGI--KRPYFHVKPLEKAQLKN--WKEYLEFEIENGTHERVVVLFERCV 377
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407
+ EE WI YA Y E + +E R V+
Sbjct: 378 ISCALYEE---------FWIKYAKYMENHS--IEGVRHVF 406
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 174 (66.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 56/243 (23%), Positives = 108/243 (44%)
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKF 201
+DR V P LW +Y+ + AR + ER + + +Q+ W++ +
Sbjct: 1612 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1671
Query: 202 ELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261
E Y E +++ER VQ + + ++ A K + A +Y R +++ ++
Sbjct: 1672 ENMYGSQESLAKVFERAVQYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKAV 1731
Query: 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
+ AF + + R + + AL+ +P D+ KF E Q GD E + AI
Sbjct: 1732 WIKYGAFVLGRSQAGASHR---VLQRALECLPTKEHVDVIVKFAQLEFQLGDVERAK-AI 1787
Query: 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQ 380
+E+ + P D+W YI + G+++ R+++ER I ++ P K +++
Sbjct: 1788 -------FENTLTTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFK 1840
Query: 381 RYI 383
RY+
Sbjct: 1841 RYL 1843
Score = 153 (58.9 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 51/261 (19%), Positives = 126/261 (48%)
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYAE 133
+F+ L+ ++ +W++Y + + +AR+V ERAL+ + +R +W+
Sbjct: 1611 DFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN 1670
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN---VAGARQIFERWM-HWM 189
+E V++RAV + ++ ++H+ ++ A +++ R + +
Sbjct: 1671 LENMYGSQESLAKVFERAV----QYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFR 1726
Query: 190 PDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARN 246
++ W+ Y F L ++ + ++ +R ++C P V +K+A+ E ++G+V+RA+
Sbjct: 1727 QEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVERAKA 1786
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI---PKGRAEDLYRK 303
++E + + +++ KE R I++ + H+ PK R + +++
Sbjct: 1787 IFENTLTTYPKRTDVWSVYIDMTIKHGSQKEV---RDIFERVI-HLSLAPK-RMKFFFKR 1841
Query: 304 FVAFEKQYGDREGIEDAIVGK 324
++ +EKQ+G + ++ A+ K
Sbjct: 1842 YLDYEKQHGTEKDVQ-AVKAK 1861
Score = 150 (57.9 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 48/234 (20%), Positives = 105/234 (44%)
Query: 66 STELADYRLRKRKEFEDL-IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
+TE+ R + + + R + VW+ E V+ERA++ +
Sbjct: 1636 ATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLAKVFERAVQYN-EP 1694
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG-NVAGA-RQIF 182
++L A++ K++ A +++R + + +W KY +LG + AGA ++
Sbjct: 1695 LKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAF--VLGRSQAGASHRVL 1752
Query: 183 ERWMHWMPDQQGWLSYIKF---ELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKM 238
+R + +P ++ +KF E + +VERA+ I+E + +PK W Y +K
Sbjct: 1753 QRALECLPTKEHVDVIVKFAQLEFQLGDVERAKAIFENTLTTYPKRTDVWSVYIDMTIKH 1812
Query: 239 GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
G R+++ER + + + F + ++E++ + + + AL+++
Sbjct: 1813 GSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1866
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 171 (65.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 56/243 (23%), Positives = 107/243 (44%)
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKF 201
+DR V P LW +Y+ + AR + ER + + +Q+ W++ +
Sbjct: 1599 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNL 1658
Query: 202 ELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261
E Y E +++ER VQ + + ++ A K + A +Y R +++ ++
Sbjct: 1659 ENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKYKEAGELYNRMLKRFRQEKAV 1718
Query: 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
+ AF + + R + + AL+ +P D+ KF E Q GD E + AI
Sbjct: 1719 WIKYGAFVLGRSQAGASHR---VLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAK-AI 1774
Query: 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQ 380
+E+ + P D+W YI + G++ R+++ER I ++ P K +++
Sbjct: 1775 -------FENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFK 1827
Query: 381 RYI 383
RY+
Sbjct: 1828 RYL 1830
Score = 151 (58.2 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 50/261 (19%), Positives = 127/261 (48%)
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYAE 133
+F+ L+ ++ +W++Y + + +AR+V ERAL+ + +R +W+
Sbjct: 1598 DFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN 1657
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN---VAGARQIFERWM-HWM 189
+E V++RAV + ++ ++H+ ++ A +++ R + +
Sbjct: 1658 LENMYGSQESLTKVFERAV----QYNEPLKVFLHLADIYTKSEKYKEAGELYNRMLKRFR 1713
Query: 190 PDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARN 246
++ W+ Y F L ++ + ++ +R ++C P V +K+A+ E ++G+V+RA+
Sbjct: 1714 QEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKA 1773
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI---PKGRAEDLYRK 303
++E L+ + ++ + + + R I++ + H+ PK R + +++
Sbjct: 1774 IFENT---LSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVI-HLSLAPK-RMKFFFKR 1828
Query: 304 FVAFEKQYGDREGIEDAIVGK 324
++ +EKQ+G + ++ A+ K
Sbjct: 1829 YLDYEKQHGTEKDVQ-AVKAK 1848
Score = 148 (57.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 48/234 (20%), Positives = 105/234 (44%)
Query: 66 STELADYRLRKRKEFEDL-IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
+TE+ R + + + R + VW+ E V+ERA++ +
Sbjct: 1623 ATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYN-EP 1681
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG-NVAGA-RQIF 182
++L A++ K++ A +++R + + +W KY +LG + AGA ++
Sbjct: 1682 LKVFLHLADIYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAF--VLGRSQAGASHRVL 1739
Query: 183 ERWMHWMPDQQGWLSYIKF---ELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKM 238
+R + +P ++ +KF E + +VERA+ I+E + +PK W Y +K
Sbjct: 1740 QRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKH 1799
Query: 239 GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
G R+++ER + + + F + ++E++ + + + AL+++
Sbjct: 1800 GSQTAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1853
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 169 (64.5 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 52/243 (21%), Positives = 108/243 (44%)
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH---WMPDQQG---WLSYIKF 201
+DR V P LW +Y+ + AR + ER + + +Q+ W++ +
Sbjct: 1578 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVWVALLNL 1637
Query: 202 ELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261
E Y E +++ER VQ + + + + +A +Y + + ++
Sbjct: 1638 ENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLRRFRQEKS- 1696
Query: 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
+++ +A F + +TE + + AL +P D+ +F E ++GD E + A+
Sbjct: 1697 --VWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEHAK-AL 1753
Query: 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI-ANVPPAEEKRYWQ 380
+E + P DIW Y+ + G+++ R+++ER I N+ P + K +++
Sbjct: 1754 -------FESTLNSYPKRTDIWSIYMDIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFFK 1806
Query: 381 RYI 383
RY+
Sbjct: 1807 RYL 1809
Score = 134 (52.2 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 40/232 (17%), Positives = 95/232 (40%)
Query: 66 STELADYRLRKRKEFEDL-IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
+TE+ R + + + R + VW+ E V+ERA++ +
Sbjct: 1602 ATEIEKARAVAERALKTICFREEQEKLNVWVALLNLENMYGTEETLMKVFERAVQYN-EP 1660
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
++ ++ ++ A ++ + + +W KY G ++ ER
Sbjct: 1661 LKVFQHLCDIYASSEKYKQAEELYHTMLRRFRQEKSVWLKYASFLLKQGQTEATHRLLER 1720
Query: 185 WMHWMPDQQ--GWLS-YIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGE 240
+ +P ++ +S + + E R+ + E A+ ++E + +PK W Y +K G
Sbjct: 1721 ALKALPTKEHVDVISRFAQLEFRFGDPEHAKALFESTLNSYPKRTDIWSIYMDIMIKQGS 1780
Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292
R+++ER + ++ + F + ++E++ TE + AL+++
Sbjct: 1781 QKEIRDIFERVIHLNLAPKKMKFFFKRYLDYEKKYGTTETVMAVKTAALEYV 1832
Score = 124 (48.7 bits), Expect = 0.00059, P = 0.00059
Identities = 50/254 (19%), Positives = 116/254 (45%)
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYAE 133
+F+ L+ ++ +W++Y + + +AR+V ERAL+ + +R +W+
Sbjct: 1577 DFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVWVALLN 1636
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM---- 189
+E V++RAV + ++ + H+ ++ + +Q E + H M
Sbjct: 1637 LENMYGTEETLMKVFERAV----QYNEPLKVFQHLCDIYASSEKYKQAEELY-HTMLRRF 1691
Query: 190 -PDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRAR 245
++ WL Y F L+ + E ++ ER ++ P V ++A+ E + G+ + A+
Sbjct: 1692 RQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEHAK 1751
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK--FALDHIPKGRAEDLYRK 303
++E + + +++ + KE R I++ L+ PK + + +++
Sbjct: 1752 ALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEI---RDIFERVIHLNLAPK-KMKFFFKR 1807
Query: 304 FVAFEKQYGDREGI 317
++ +EK+YG E +
Sbjct: 1808 YLDYEKKYGTTETV 1821
Score = 122 (48.0 bits), Expect = 0.00098, P = 0.00098
Identities = 45/207 (21%), Positives = 89/207 (42%)
Query: 195 WLSYIKFELRYNEVERARQIYERFVQ--C----HPKVSTWIKYAKFEMKMGEVDRARNVY 248
WL Y+ F L+ E+E+AR + ER ++ C K++ W+ E G + V+
Sbjct: 1592 WLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVWVALLNLENMYGTEETLMKVF 1651
Query: 249 ERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFE 308
ERAV+ + + L +A E+ K+ E +Y L + ++ ++ K+ +F
Sbjct: 1652 ERAVQYNEPLKVFQHLCDIYAS-SEKYKQAEE---LYHTMLRRFRQEKS--VWLKYASFL 1705
Query: 309 KQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIA 368
+ G E R + + + D+ + +LE G+ E A+ ++E +
Sbjct: 1706 LKQGQTEATH------RLLERALKALPTKEHVDVISRFAQLEFRFGDPEHAKALFESTLN 1759
Query: 369 NVPPAEEKRYWQRYIYLWINYALYEEL 395
+ P + W Y+ + I +E+
Sbjct: 1760 SYPKRTD--IWSIYMDIMIKQGSQKEI 1784
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 56/217 (25%), Positives = 99/217 (45%)
Query: 71 DYRLRKRKEFEDLIRRVRWNTGV--------WIKYAKWEESQKDFNRARSVWERALEVDY 122
++ + KR FE+ I+R ++ W +Y ++E R ++ER +
Sbjct: 285 EHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA 344
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQI 181
W+KYA+ M+N I R+V+ RA T+ LP+ + + EE GN+ AR+I
Sbjct: 345 LYEDFWIKYAKY-MENHSIEGVRHVYSRACTIHLPKKPMVHMLWAAFEEQQGNIDEARRI 403
Query: 182 FERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTW----IKYAKFEM 236
+ + + L + E R+ +E A ++ E V+ VS IK A+
Sbjct: 404 LKTFEECILGLAMVRLRRVSLERRHGNMEEAERLLEEAVRNAKSVSESSFYAIKLARHLF 463
Query: 237 KMGE-VDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272
K+ + + +AR V A+E D+E +L++ E E
Sbjct: 464 KVQKNLPKARKVLSDAIEI---DKENTKLYLNLLEME 497
Score = 122 (48.0 bits), Expect = 0.00027, P = 0.00027
Identities = 38/127 (29%), Positives = 62/127 (48%)
Query: 193 QGWLSYIKFELRYNEVERARQIYERFV-QCHPKVSTWIKYAKFEMKMGEVDRARNVYERA 251
+ W Y++FE+ ER ++ER V C WIKYAK+ M+ ++ R+VY RA
Sbjct: 314 KNWKEYLEFEIENGTHERVVVLFERCVISCALYEDFWIKYAKY-MENHSIEGVRHVYSRA 372
Query: 252 VEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311
+ + + +A FEE+ + AR I K + G A R+ V+ E+++
Sbjct: 373 CT--IHLPKKPMVHMLWAAFEEQQGNIDEARRILK-TFEECILGLAMVRLRR-VSLERRH 428
Query: 312 GDREGIE 318
G+ E E
Sbjct: 429 GNMEEAE 435
Score = 107 (42.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 40/174 (22%), Positives = 75/174 (43%)
Query: 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAE--- 133
RK F+ + G W KYA E + ++ V+ R L+ + LW+ Y
Sbjct: 75 RKAFDKFFTHYPYCYGYWKKYADLERRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLK 134
Query: 134 --VEMKNKFINHA-RNVWDRAVTLLP---RVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187
++ + N R ++ AV R D+LW YI+ E+ GN+ I++R +
Sbjct: 135 DTLDPDDPEANSTIRGAYEHAVLAAGTDFRSDRLWEMYINWEDEQGNLREVTSIYDRILG 194
Query: 188 WMPDQQGWLSYIKFELRY-NEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGE 240
+P Q + +F+ N + R E+F+Q ++++ +A + G+
Sbjct: 195 -IPTQLYSHHFQRFKDHVQNNLPRDLLTSEQFIQLRRELASVNGHAGGDASAGD 247
Score = 104 (41.7 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 41/159 (25%), Positives = 74/159 (46%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
++ W +Y +FE++ G +R ++ER V A E+ ++ +A++ E E R
Sbjct: 312 QLKNWKEYLEFEIENGTHERVVVLFERCVISCALYED---FWIKYAKYMEN-HSIEGVRH 367
Query: 284 IYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF--QYEDEVRKNPMNY 340
+Y A H+PK ++ + AFE+Q G+ I++A RR +E+ + M
Sbjct: 368 VYSRACTIHLPKKPM--VHMLWAAFEEQQGN---IDEA----RRILKTFEECILGLAM-- 416
Query: 341 DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ + LE GN E A + E A+ N E ++
Sbjct: 417 -VRLRRVSLERRHGNMEEAERLLEEAVRNAKSVSESSFY 454
Score = 91 (37.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 37/157 (23%), Positives = 67/157 (42%)
Query: 106 DFNRARSVWERALEVDYRNHTLWLKYAE-VEMKNKFINHARNVWDRAVTLLPRVDQLWYK 164
DF++ W + +E + ++ T W+ + VE +N + AR +D+ T P W K
Sbjct: 40 DFDK---FW-KVVEDNPQDFTGWVYLLQYVEQENH-LPAARKAFDKFFTHYPYCYGYWKK 94
Query: 165 YIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEVER---ARQIYER 217
Y +E N+ + +++ R + +P W+ YI F L ++ E R YE
Sbjct: 95 YADLERRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKDTLDPDDPEANSTIRGAYEH 154
Query: 218 FVQC----HPKVSTWIKYAKFEMKMGEVDRARNVYER 250
V W Y +E + G + ++Y+R
Sbjct: 155 AVLAAGTDFRSDRLWEMYINWEDEQGNLREVTSIYDR 191
Score = 88 (36.0 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 30/140 (21%), Positives = 59/140 (42%)
Query: 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
TG W+ ++ E + AR +++ + W KYA++E ++ I + V+ R
Sbjct: 56 TG-WVYLLQYVEQENHLPAARKAFDKFFTHYPYCYGYWKKYADLERRHDNIKQSDEVYRR 114
Query: 151 AVTLLPRVDQLWYKYIH-MEEML--------GNVAGARQ--IFERWMHWMPDQQGWLSYI 199
+ +P LW YI+ +++ L + GA + + + D+ W YI
Sbjct: 115 GLQAIPLSVDLWIHYINFLKDTLDPDDPEANSTIRGAYEHAVLAAGTDFRSDRL-WEMYI 173
Query: 200 KFELRYNEVERARQIYERFV 219
+E + IY+R +
Sbjct: 174 NWEDEQGNLREVTSIYDRIL 193
Score = 61 (26.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 26/100 (26%), Positives = 41/100 (41%)
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E + R E+ I KR + + + K + W +Y+ E G ER ++ER +
Sbjct: 285 EHEVSKRWTFEEGI--KRPYFHVKPLEKAQLKN--WKEYLEFEIENGTHERVVVLFERCV 340
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407
+ E+ WI YA Y E + +E R VY
Sbjct: 341 ISCALYED---------FWIKYAKYMENHS--IEGVRHVY 369
>MGI|MGI:104602 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog
(yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 MGI:MGI:104602 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
HOGENOM:HOG000010277 HOVERGEN:HBG082194 OrthoDB:EOG49GKG9
EMBL:AK017379 EMBL:AK154170 EMBL:AK168462 EMBL:BC029153
IPI:IPI00170040 IPI:IPI00761305 UniGene:Mm.283339
ProteinModelPortal:Q8K2Z2 SMR:Q8K2Z2 STRING:Q8K2Z2
PhosphoSite:Q8K2Z2 PaxDb:Q8K2Z2 PRIDE:Q8K2Z2 UCSC:uc007nqw.1
UCSC:uc007nra.1 InParanoid:Q8K2Z2 ChiTaRS:PRPF39
Genevestigator:Q8K2Z2 GermOnline:ENSMUSG00000035597 Uniprot:Q8K2Z2
Length = 665
Score = 133 (51.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 62/233 (26%), Positives = 105/233 (45%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153
W +Y ++E R ++ER + W+KYA+ M+N I R+V+ RA T
Sbjct: 354 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKY-MENHSIEGVRHVFSRACT 412
Query: 154 L-LPRVDQLWYKYIHMEEMLGNVAGARQI---FERWMHWMPDQQGWLSYIKFELRYNEVE 209
+ LP+ + EE GN+ AR I FE + + + L + E R+ +E
Sbjct: 413 VHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVR--LRRVSLERRHGNME 470
Query: 210 RARQIYERFVQ---CHPKVSTW-IKYAKFEMKMGE-VDRARNVYERAVEKLADDEEAEQL 264
A + + ++ + + S + IK A+ K+ + + ++R V A+EK D+E +L
Sbjct: 471 EAEHLLQDAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIEK---DKENTKL 527
Query: 265 FVAFAEFEERC--KETER--ARCIYKFALDHIP-KGRAEDLYRKFVAFEKQYG 312
++ E E C K+ E C K +P K R RK V F + +G
Sbjct: 528 YLNLLEMEYSCDLKQNEENILNCFDKAIHGSLPIKMRITFSQRK-VEFLEDFG 579
Score = 120 (47.3 bits), Expect = 0.00049, P = 0.00049
Identities = 39/129 (30%), Positives = 62/129 (48%)
Query: 192 QQGWLSYIKFELRYNEVERARQIYERFV-QCHPKVSTWIKYAKFEMKMGEVDRARNVYER 250
++ W Y++FE+ ER ++ER V C WIKYAK+ M+ ++ R+V+ R
Sbjct: 351 KKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKY-MENHSIEGVRHVFSR 409
Query: 251 AVE-KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEK 309
A L A L+ AF E + E AR I + + G A R+ V+ E+
Sbjct: 410 ACTVHLPKKPMAHMLWAAFEEQQGNINE---ARIILR-TFEECVLGLAMVRLRR-VSLER 464
Query: 310 QYGDREGIE 318
++G+ E E
Sbjct: 465 RHGNMEEAE 473
Score = 107 (42.7 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 40/170 (23%), Positives = 75/170 (44%)
Query: 68 ELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL 127
E ++ + RK F+ + G W KYA E+ + ++ V+ R L+ + L
Sbjct: 104 EQENHLMAARKAFDKFFVHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDL 163
Query: 128 WLKYAE-----VEMKNKFINHA-RNVWDRAVTLLP---RVDQLWYKYIHMEEMLGNVAGA 178
W+ Y +E ++ N R ++ AV R D+LW YI+ E GN+
Sbjct: 164 WIHYINFLKETLEPGDQETNTTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREV 223
Query: 179 RQIFERWMHWMPDQQGWLSYIKF-ELRYNEVERARQIYERFVQCHPKVST 227
+++R + +P Q + +F E N + R E+F+Q ++++
Sbjct: 224 TAVYDRILG-IPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELAS 272
Score = 104 (41.7 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 220 QCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETE 279
+ PK W +Y +FE++ G +R ++ER V A EE ++ +A++ E E
Sbjct: 347 KAQPK-KNWKEYLEFEIENGTHERVVVLFERCVISCALYEE---FWIKYAKYMEN-HSIE 401
Query: 280 RARCIYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM 338
R ++ A H+PK + + AFE+Q G+ I +A + R F E+ V M
Sbjct: 402 GVRHVFSRACTVHLPKKPMAHML--WAAFEEQQGN---INEARIILRTF--EECVLGLAM 454
Query: 339 NYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ + LE GN E A + + AI N E ++
Sbjct: 455 ---VRLRRVSLERRHGNMEEAEHLLQDAIKNAKSNNESSFY 492
Score = 96 (38.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 39/157 (24%), Positives = 68/157 (43%)
Query: 79 EFEDLIRRVRWN----TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAE 133
EFE + V N TG W+ ++ E + AR +++ V Y + W KYA+
Sbjct: 78 EFEKFWKTVEMNPQDFTG-WVYLLQYVEQENHLMAARKAFDKFF-VHYPYCYGYWKKYAD 135
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH-MEEML--GNV---AGARQIFERWM- 186
+E ++ I + V+ R + +P LW YI+ ++E L G+ R FE +
Sbjct: 136 LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEHAVL 195
Query: 187 ----HWMPDQQGWLSYIKFELRYNEVERARQIYERFV 219
+ D+ W YI +E + +Y+R +
Sbjct: 196 AAGTDFRSDKL-WEMYINWENEQGNLREVTAVYDRIL 231
Score = 59 (25.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 26/100 (26%), Positives = 41/100 (41%)
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E + R E+ I KR + + + K + W +Y+ E G ER ++ER +
Sbjct: 322 EHEVSKRWTFEEGI--KRPYFHVKPLEKAQPKKN-WKEYLEFEIENGTHERVVVLFERCV 378
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407
+ EE WI YA Y E + +E R V+
Sbjct: 379 ISCALYEE---------FWIKYAKYMENHS--IEGVRHVF 407
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 164 (62.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 61/284 (21%), Positives = 122/284 (42%)
Query: 96 KYAKWEESQKDFNRARSV---WERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
K ++++ +KD + S +ER L + LW+ Y + + AR V RA+
Sbjct: 1408 KSDRFDDEEKDLDEIPSTAADFERQLLSSPNSSLLWISYMAYHLNLNELQEAREVGKRAL 1467
Query: 153 TLLPRVDQ-----LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNE 207
+ + ++ +W +++E G +++F+ + + ++ +
Sbjct: 1468 STINYREEDEKLNVWMALLNLEVAYGTEDSLKEVFKEACAYCDALIVYEKLCGILIKGGK 1527
Query: 208 VERARQIYERFVQCHPKV-STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFV 266
V+ A + + ++ +V S WI+YA F + + ++A + ER+++ L E +
Sbjct: 1528 VDLADEYMQLMLKNFKQVPSVWIQYATFLLNNDKAEKAHGLLERSLQSLPKSEHVG-IIE 1586
Query: 267 AFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRR 326
FA E + + ER R I++ L PK R DL+ + E + D + +R
Sbjct: 1587 KFAILEFKNGDPERGRTIFEGLLSSYPK-RL-DLWNVLIDMEMKQDDPSIVRRLF--QRL 1642
Query: 327 FQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANV 370
+K + W Y E+++G+ E A +V RAI V
Sbjct: 1643 LALNLSTKKAKFAFKKWLAY---EKNIGDDEGAEQVKRRAIEYV 1683
Score = 155 (59.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 58/250 (23%), Positives = 112/250 (44%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALE-VDYRNH----TLWLKYAEVEMKNKFINHARNV 147
+WI Y + + + AR V +RAL ++YR +W+ +E+ + + V
Sbjct: 1442 LWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGTEDSLKEV 1501
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM-HWMPDQQGWLSYIKFELRYN 206
+ A + ++ K + G V A + + + ++ W+ Y F L +
Sbjct: 1502 FKEACAYCDALI-VYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYATFLLNND 1560
Query: 207 EVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQ 263
+ E+A + ER +Q PK V K+A E K G+ +R R ++E L+ +
Sbjct: 1561 KAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGL---LSSYPKRLD 1617
Query: 264 LFVAFAEFEERCKETERARCIYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322
L+ + E + + R +++ L ++ +A+ ++K++A+EK GD EG E V
Sbjct: 1618 LWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAEQ--V 1675
Query: 323 GKRRFQYEDE 332
+R +Y E
Sbjct: 1676 KRRAIEYVSE 1685
Score = 126 (49.4 bits), Expect = 0.00033, P = 0.00033
Identities = 55/267 (20%), Positives = 115/267 (43%)
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM----PDQQ--GWLSYIKF 201
++R + P LW Y+ L + AR++ +R + + D++ W++ +
Sbjct: 1429 FERQLLSSPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNL 1488
Query: 202 ELRYNEVERARQIY-ERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260
E+ Y + ++++ E C + + K +K G+VD A + Y + + L + ++
Sbjct: 1489 EVAYGTEDSLKEVFKEACAYCDALI-VYEKLCGILIKGGKVDLA-DEYMQLM--LKNFKQ 1544
Query: 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320
+++ +A F + E+A + + +L +PK + KF E + GD E
Sbjct: 1545 VPSVWIQYATFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPE----- 1599
Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIA-NVPPAEEKRYW 379
+ R +E + P D+W I +E + R +++R +A N+ + K +
Sbjct: 1600 ---RGRTIFEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAF 1656
Query: 380 QRYIYLWINYALYEELDAGDMERTRDV 406
++ W+ Y E + GD E V
Sbjct: 1657 KK----WLAY----EKNIGDDEGAEQV 1675
>UNIPROTKB|A5PJN6 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005730 GO:GO:0006396 Gene3D:1.25.40.10
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640 CTD:55813
HOGENOM:HOG000285956 HOVERGEN:HBG051886 OMA:EKEQESC
OrthoDB:EOG4RBQJ7 GeneTree:ENSGT00390000016493 EMBL:DAAA02048528
EMBL:BC142183 IPI:IPI00710076 RefSeq:NP_001092610.1
UniGene:Bt.20427 STRING:A5PJN6 Ensembl:ENSBTAT00000020740
GeneID:614984 KEGG:bta:614984 InParanoid:A5PJN6 NextBio:20899389
Uniprot:A5PJN6
Length = 598
Score = 126 (49.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 41/166 (24%), Positives = 80/166 (48%)
Query: 209 ERARQIYERFVQCHPKVST--WIKYAKFEMKMGEVDRARNVYERAVEKL--ADDEEAEQL 264
E ++ + F P++ W+ +A++ G+ + +Y+RA+ L AD +++
Sbjct: 421 EMSKGFEQAFEYLKPQICLPLWLTWAQWSEDAGKQEETEAIYKRAIFGLPGADSVPVKEM 480
Query: 265 FVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGK 324
++ +A R ++AR ++K ++ P + D +RK + FEK+ E +
Sbjct: 481 YLNWAY---RSGGYKKARDVFKSLQENRPF--SVDFFRKMIQFEKEQ------ESCKMEN 529
Query: 325 RRFQYEDEVRKNPMN-YDIWFDYIR--LEESVGNKERAREVYERAI 367
R YE +R+ N D+W DYI+ L +G E ++Y RA+
Sbjct: 530 LREYYERALREFGTNDSDLWMDYIKEELNHPLGRPENCGQIYWRAM 575
Score = 86 (35.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 44/203 (21%), Positives = 89/203 (43%)
Query: 209 ERARQIYERFVQCHPKVSTWIKYAKFEM-KMGEVDRARNVYERAVEK-LADDEEAEQLFV 266
ER +YE V+ P + W Y F M + + +R + ++ +E+ + +A +L +
Sbjct: 308 ERCCAVYEEAVKTVPTEAMWKCYMNFCMERFTKKTSSRLLRKKRLERTMVAFWKAHELKL 367
Query: 267 AFAEFEER-CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325
E + R + R + K +L+ G L++K V + + ++ +
Sbjct: 368 -LPELQYRQLSKLLLHRQLLKESLEVADAG--VKLFKKSVEMWQVKLEALITSESHEMSK 424
Query: 326 RFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
F+ E K + +W + + E G +E +Y+RAI +P A+ + Y+
Sbjct: 425 GFEQAFEYLKPQICLPLWLTWAQWSEDAGKQEETEAIYKRAIFGLPGADSVPVKEMYL-- 482
Query: 386 WINYALYEELDAGDMERTRDVYQ 408
N+A Y +G ++ RDV++
Sbjct: 483 --NWA-YR---SGGYKKARDVFK 499
Score = 78 (32.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/110 (22%), Positives = 50/110 (45%)
Query: 81 EDLIRR--VRWNTGV--WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEM 136
+ + RR ++W V W+ + + ++ L LW+ A+ E+
Sbjct: 93 QSVFRRASIKWKDDVRLWLSFIAFCRKWASNVHLSKIFSSLLAFHSNKPGLWILAAKWEL 152
Query: 137 KNKFINH-ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN-VAGARQIFER 184
+++F + AR ++ RA+ PR +L+ +Y ME M + +Q FE+
Sbjct: 153 EDRFSSESARQLFLRALRFHPRCPKLYEEYFRMELMHAEKLRKEKQEFEK 202
>WB|WBGene00017768 [details] [associations]
symbol:F25B4.5 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0009792 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0007281 EMBL:FO080538
GeneTree:ENSGT00390000005033 KO:K13217 PIR:T25725
RefSeq:NP_504495.1 ProteinModelPortal:Q22961 SMR:Q22961
STRING:Q22961 PaxDb:Q22961 EnsemblMetazoa:F25B4.5.1
EnsemblMetazoa:F25B4.5.2 GeneID:178955 KEGG:cel:CELE_F25B4.5
UCSC:F25B4.5.1 CTD:178955 WormBase:F25B4.5 eggNOG:NOG298273
HOGENOM:HOG000018990 InParanoid:Q22961 OMA:VLLELRY NextBio:903274
Uniprot:Q22961
Length = 710
Score = 102 (41.0 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 49/214 (22%), Positives = 101/214 (47%)
Query: 190 PDQQGWLSYIKFELRYNEVERARQIYER-FVQCHPKVSTWIKYAKFEMKMGEVD-RARNV 247
P W+SY+ FE++ ER + +++R + C WIKYA++ K + ++R +
Sbjct: 382 PQLFNWMSYLDFEIKEGHEERVKILFDRCLIPCSLYEEFWIKYARWTWKTYKSKTKSREI 441
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307
Y +A K+ L ++ + FEE + + A I + P +L +++
Sbjct: 442 YMKA--KIHCPTSLN-LALSESGFEESVENFDDAIKILDNFREEYPGYVLLEL--RYLGV 496
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDY-IRL----EESVGNKERAREV 362
++ ++EG A QYE +R + + ++ Y ++L ++S + + A++V
Sbjct: 497 LRRKSEKEG-HGAPSEFVMNQYESLIRDSQSSPNLHSFYSLKLARYHQKSRRDPKLAQKV 555
Query: 363 YERAIANVPPAEEKRYWQRYIYLWINYALYEELD 396
++AI+ + P + Y Q Y+ + + ELD
Sbjct: 556 LKKAIS-IDPFNLQLYSQ-YVDIAYSSESMSELD 587
Score = 101 (40.6 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 28/98 (28%), Positives = 52/98 (53%)
Query: 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKY-AEVE 135
R+++ + R G W KYA++E+ + A++VWE+ + + LWL Y A+V+
Sbjct: 119 REKYRSFLSRYPNCYGFWQKYAEYEKKMGNIAEAKAVWEKGIISIPLSIDLWLGYTADVK 178
Query: 136 -MKNKFINHARNVWDRAVTLLP---RVDQLWYKYIHME 169
+KN R+++ RA+ + + D+LW + I E
Sbjct: 179 NIKNFPPESLRDLYARAIEIAGLEYQSDRLWLEAIGFE 216
Score = 93 (37.8 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 34/118 (28%), Positives = 52/118 (44%)
Query: 94 WIKY-AKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAEVEMKNKFINHARNVWDRA 151
W+ AK ++S D + AR + L Y N + W KYAE E K I A+ VW++
Sbjct: 102 WVNILAKVDQSD-DVDFAREKYRSFLS-RYPNCYGFWQKYAEYEKKMGNIAEAKAVWEKG 159
Query: 152 VTLLPRVDQLWYKYIHMEEMLGNVA--GARQIFER-----WMHWMPDQQGWLSYIKFE 202
+ +P LW Y + + N R ++ R + + D+ WL I FE
Sbjct: 160 IISIPLSIDLWLGYTADVKNIKNFPPESLRDLYARAIEIAGLEYQSDRL-WLEAIGFE 216
Score = 87 (35.7 bits), Expect = 0.00077, Sum P(3) = 0.00077
Identities = 25/106 (23%), Positives = 51/106 (48%)
Query: 120 VDYRNHTLWLKY-AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 178
+D + W+ A+V+ + ++ AR + ++ P W KY E+ +GN+A A
Sbjct: 94 IDVADFDNWVNILAKVDQSDD-VDFAREKYRSFLSRYPNCYGFWQKYAEYEKKMGNIAEA 152
Query: 179 RQIFERWMHWMP-DQQGWLSY---IKFELRYNEVERARQIYERFVQ 220
+ ++E+ + +P WL Y +K ++ E R +Y R ++
Sbjct: 153 KAVWEKGIISIPLSIDLWLGYTADVK-NIKNFPPESLRDLYARAIE 197
Score = 77 (32.2 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 26/101 (25%), Positives = 47/101 (46%)
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC-KETER 280
+P++ W+ Y FE+K G +R + +++R L E+ ++ +A + + K +
Sbjct: 381 YPQLFNWMSYLDFEIKEGHEERVKILFDRC---LIPCSLYEEFWIKYARWTWKTYKSKTK 437
Query: 281 ARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
+R IY A H P +L FE+ E +DAI
Sbjct: 438 SREIYMKAKIHCPTSL--NLALSESGFEESV---ENFDDAI 473
Score = 63 (27.2 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 28/128 (21%), Positives = 57/128 (44%)
Query: 288 ALDHIPKG----RAEDLYRKFVAFEKQYGD---REGIEDAIVGKRRFQYEDEVRKNPMNY 340
+L H P R E + R+ ++K + R G E I KR + + + P +
Sbjct: 329 SLQHDPTALQLIRGEIVARRKRIYDKNMKECEIRAGFEANI--KRPY-FHVKPLDYPQLF 385
Query: 341 DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI-YLWINYALYEELDAGD 399
+ W Y+ E G++ER + +++R + +P + + +W +Y + W Y
Sbjct: 386 N-WMSYLDFEIKEGHEERVKILFDRCL--IPCSLYEEFWIKYARWTWKTYK--------S 434
Query: 400 MERTRDVY 407
++R++Y
Sbjct: 435 KTKSREIY 442
Score = 40 (19.1 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 339 NYDIWFDY-IRLEESVGNKERAREVYERAIANVPPAEEKR 377
++D+ D +RLE+ V +R + E N+ E+ R
Sbjct: 591 SFDVALDSNLRLEDKVRFSQRKLDFLEELGNNILAVEDHR 630
>ZFIN|ZDB-GENE-030616-420 [details] [associations]
symbol:prpf39 "PRP39 pre-mRNA processing factor 39
homolog (yeast)" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-030616-420 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
Gene3D:1.25.40.10 eggNOG:COG5107 EMBL:AL591492 EMBL:BC116540
IPI:IPI00481955 RefSeq:NP_001004520.1 UniGene:Dr.340
ProteinModelPortal:Q1JPZ7 STRING:Q1JPZ7 PRIDE:Q1JPZ7
Ensembl:ENSDART00000061672 GeneID:368864 KEGG:dre:368864 CTD:55015
GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 InParanoid:Q1JPZ7 KO:K13217 OMA:GWVYLLQ
OrthoDB:EOG49GKG9 NextBio:20813235 ArrayExpress:Q1JPZ7 Bgee:Q1JPZ7
Uniprot:Q1JPZ7
Length = 752
Score = 106 (42.4 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 44/157 (28%), Positives = 74/157 (47%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
+++ W +Y FE++ G +R ++ER + A EE ++ +A++ E TE R
Sbjct: 427 QLNNWREYLDFELENGTPERVVVLFERCLIACALYEE---FWIKYAKYLESYS-TEAVRH 482
Query: 284 IYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
IYK A H+PK +++ + AFE+Q G I++A R EV P +
Sbjct: 483 IYKKACTVHLPK--KPNVHLLWAAFEEQQGS---IDEA----RSILKAVEVSV-PGLAMV 532
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ LE GN E A + + AI N + E ++
Sbjct: 533 RLRRVSLERRHGNMEEAEALLQDAITNGRNSSESSFY 569
Score = 97 (39.2 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 38/144 (26%), Positives = 58/144 (40%)
Query: 68 ELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL 127
E ++ L RK F+ + G W KYA E A V+ R L+ + L
Sbjct: 177 EQENHLLGSRKAFDAFFLHYPYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDL 236
Query: 128 WLKYAEVEMKNKFINHA------RNVWDRAVTLLP---RVDQLWYKYIHMEEMLGNVAGA 178
WL Y +N+ + R ++ AV R D+LW YI E G +A
Sbjct: 237 WLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANV 296
Query: 179 RQIFERWMHWMPDQQGWLSYIKFE 202
I++R + +P Q + KF+
Sbjct: 297 TAIYDRLL-CIPTQLYSQHFQKFK 319
>UNIPROTKB|F1PV57 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 CTD:55015 GeneTree:ENSGT00390000005033 KO:K13217
OMA:GWVYLLQ EMBL:AAEX03005706 RefSeq:XP_851059.2
Ensembl:ENSCAFT00000022300 GeneID:480305 KEGG:cfa:480305
Uniprot:F1PV57
Length = 667
Score = 127 (49.8 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 66/264 (25%), Positives = 118/264 (44%)
Query: 71 DYRLRKRKEFEDLIRRVRWNTGV--------WIKYAKWEESQKDFNRARSVWERALEVDY 122
++ + KR FE+ I+R ++ W +Y ++E R ++ER +
Sbjct: 323 EHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA 382
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQI 181
W+KYA+ M+N I R+V+ RA T+ LP+ + + EE GN+ AR I
Sbjct: 383 LYEEFWIKYAKY-MENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNI 441
Query: 182 ---FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ---CHPKVSTW-IKYAKF 234
FE + + + L + E R+ +E A + + ++ + + S + IK A+
Sbjct: 442 LRTFEECVLGLAMVR--LRRVSLERRHGNMEEAEHLLQDAIKNAKSNNESSFYAIKLARH 499
Query: 235 EMKMGE-VDRARNVYERAVEKLADDEEAEQLFVAFAEFEER--CKETER--ARCIYKFAL 289
K+ + + ++R V A+E+ D+E +L++ E E K+ E C K
Sbjct: 500 LFKIQKNLPKSRKVLLEAIER---DKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAIH 556
Query: 290 DHIP-KGRAEDLYRKFVAFEKQYG 312
+P K R RK V F + +G
Sbjct: 557 GSLPIKMRITFSQRK-VEFLEDFG 579
Score = 104 (41.7 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 40/170 (23%), Positives = 74/170 (43%)
Query: 68 ELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL 127
E ++ + RK F+ + G W KYA E+ + ++ V+ R L+ + L
Sbjct: 104 EQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDL 163
Query: 128 WLKYAE-----VEMKNKFINHA-RNVWDRAVTLLP---RVDQLWYKYIHMEEMLGNVAGA 178
W+ Y ++ + N R ++ AV R D+LW YI+ E GN+
Sbjct: 164 WIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREV 223
Query: 179 RQIFERWMHWMPDQQGWLSYIKF-ELRYNEVERARQIYERFVQCHPKVST 227
I++R + +P Q + +F E N + R E+F+Q ++++
Sbjct: 224 TAIYDRILG-IPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELAS 272
Score = 97 (39.2 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 42/157 (26%), Positives = 72/157 (45%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
++ W +Y +FE++ G +R ++ER V A EE ++ +A++ E E R
Sbjct: 350 QLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE---FWIKYAKYMEN-HSIEGVRH 405
Query: 284 IYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
++ A H+PK ++ + AFE+Q G+ I +A R F E+ V M +
Sbjct: 406 VFSRACTIHLPKKPM--VHMLWAAFEEQQGN---INEARNILRTF--EECVLGLAM---V 455
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ LE GN E A + + AI N E ++
Sbjct: 456 RLRRVSLERRHGNMEEAEHLLQDAIKNAKSNNESSFY 492
Score = 91 (37.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 38/157 (24%), Positives = 69/157 (43%)
Query: 79 EFEDLIRRVRWN----TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAE 133
E+E + V N TG W+ ++ E + AR +++ + Y + W KYA+
Sbjct: 78 EYEKFWKTVENNPQDFTG-WVYLLQYVEQENHLMAARKAFDKFF-IHYPYCYGYWKKYAD 135
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH-MEEML--GNV---AGARQIFERWM- 186
+E ++ I + V+ R + +P LW YI+ ++E L G+ + R FE +
Sbjct: 136 LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVL 195
Query: 187 ----HWMPDQQGWLSYIKFELRYNEVERARQIYERFV 219
+ D+ W YI +E + IY+R +
Sbjct: 196 AAGTDFRSDRL-WEMYINWENEQGNLREVTAIYDRIL 231
Score = 83 (34.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 34/161 (21%), Positives = 65/161 (40%)
Query: 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAE-VEMKNKFINHARNVWDRAVTLLPRVDQ 160
E++ +F + + +E + ++ T W+ + VE +N + AR +D+ P
Sbjct: 70 ETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMA-ARKAFDKFFIHYPYCYG 128
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEVERARQIYE 216
W KY +E+ N+ + +++ R + +P W+ YI F L + E I
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRG 188
Query: 217 RFVQCHPKVST-------WIKYAKFEMKMGEVDRARNVYER 250
F T W Y +E + G + +Y+R
Sbjct: 189 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDR 229
Score = 60 (26.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 26/100 (26%), Positives = 41/100 (41%)
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E + R E+ I KR + + + K + W +Y+ E G ER ++ER +
Sbjct: 323 EHEVSKRWTFEEGI--KRPYFHVKPLEKAQLKN--WKEYLEFEIENGTHERVVVLFERCV 378
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407
+ EE WI YA Y E + +E R V+
Sbjct: 379 ISCALYEE---------FWIKYAKYMENHS--IEGVRHVF 407
>DICTYBASE|DDB_G0290181 [details] [associations]
symbol:DDB_G0290181 "RNA binding S1 domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0290181 GO:GO:0003723
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000158
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_635864.1 ProteinModelPortal:Q54GG4
EnsemblProtists:DDB0238055 GeneID:8627520 KEGG:ddi:DDB_G0290181
OMA:QRNIWIA Uniprot:Q54GG4
Length = 909
Score = 154 (59.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 56/251 (22%), Positives = 111/251 (44%)
Query: 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM-P----DQQG-WLSYIKF 201
++R + P +W K++ L + AR+I ER + + P +Q+ W++
Sbjct: 642 FERMILGTPNSSYIWIKFMSYYLGLSEINKAREIGERAIKKIIPTQVLEQRNIWIAMYNL 701
Query: 202 ELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261
E Y + ++++R +Q + ++ G+ +R ++ +K D + +
Sbjct: 702 ENLYGTPDSLLKLFQRSIQYQDPKTMYLTIINILENTGKFERTEEYFKMLFKK--DGKHS 759
Query: 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
+++ + EF +C E I AL+ +PK + + KF E + GD E
Sbjct: 760 AKVWCRYGEFLLKCNNIEVFNSILSRALEILPKKKQIKVINKFAQLEYKLGDIE------ 813
Query: 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLE----ESVGN----KERAREVYERAIA-NVPP 372
+ R +E V P DIW Y+ +E ES+ + KE+ R ++ R IA V
Sbjct: 814 --RGRTIFEGLVSNYPNRTDIWNIYLDMELRDKESIKSSKELKEKIRMLFNRTIALKVSD 871
Query: 373 AEEKRYWQRYI 383
K++++R++
Sbjct: 872 RNIKQFFKRFL 882
Score = 147 (56.8 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 53/256 (20%), Positives = 117/256 (45%)
Query: 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-------VDYRNHTLWLK 130
++FE +I ++ +WIK+ + + N+AR + ERA++ ++ RN +W+
Sbjct: 640 QDFERMILGTPNSSYIWIKFMSYYLGLSEINKAREIGERAIKKIIPTQVLEQRN--IWIA 697
Query: 131 YAEVEMKNKFINHARNVWDRAVTLL-PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM 189
+E + ++ R++ P+ ++ I++ E G + F+ M +
Sbjct: 698 MYNLENLYGTPDSLLKLFQRSIQYQDPKT--MYLTIINILENTGKFERTEEYFK--MLFK 753
Query: 190 PDQQG----WLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVD 242
D + W Y +F L+ N +E I R ++ PK + K+A+ E K+G+++
Sbjct: 754 KDGKHSAKVWCRYGEFLLKCNNIEVFNSILSRALEILPKKKQIKVINKFAQLEYKLGDIE 813
Query: 243 RARNVYERAVEKLADDEEAEQLFVAFA----EFEERCKET-ERARCIYKFALD-HIPKGR 296
R R ++E V + + +++ E + KE E+ R ++ + +
Sbjct: 814 RGRTIFEGLVSNYPNRTDIWNIYLDMELRDKESIKSSKELKEKIRMLFNRTIALKVSDRN 873
Query: 297 AEDLYRKFVAFEKQYG 312
+ +++F+ FEK++G
Sbjct: 874 IKQFFKRFLQFEKEFG 889
>UNIPROTKB|E2RMS8 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 KO:K14557 InterPro:IPR013949
Pfam:PF08640 CTD:55813 OMA:EKEQESC GeneTree:ENSGT00390000016493
EMBL:AAEX03006648 RefSeq:XP_853877.1 ProteinModelPortal:E2RMS8
Ensembl:ENSCAFT00000029395 GeneID:480616 KEGG:cfa:480616
NextBio:20855608 Uniprot:E2RMS8
Length = 598
Score = 105 (42.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 36/145 (24%), Positives = 68/145 (46%)
Query: 228 WIKYAKFEMKMGEVDRARNVYERAV--EKLADDEEAEQLFVAFAEFEERCKETERARCIY 285
WI +A++ + ++++A+ K AD + ++ +A R ++AR ++
Sbjct: 442 WISWAEWSEGTKREEDTEAIFKKALLAVKGADSVTLKNKYLDWAY---RSGGYKKARAVF 498
Query: 286 KFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRK-NPMNYDIWF 344
K + P + D +RK + FEK+ E + R YE +R+ ++ D+W
Sbjct: 499 KSLQESRPF--SVDFFRKIIQFEKEQ------ESCKMANLREYYERALREFGSVDSDLWM 550
Query: 345 DYIR--LEESVGNKERAREVYERAI 367
DYI+ L +G E ++Y RAI
Sbjct: 551 DYIKEELNHPLGKPENCGQIYWRAI 575
Score = 92 (37.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 34/146 (23%), Positives = 69/146 (47%)
Query: 111 RSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170
+++ ++A +++YR L K FIN+ + + + R ++ Y + +E
Sbjct: 31 KAIIKKASDLEYRIQRRAL------FKEDFINYVQYEINLLELIQRRRTRIGYSF-KKDE 83
Query: 171 MLGNVAGARQ-IFERWM-HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVST 227
+ ++ Q +F R W D Q WLSY+ F ++ + +++ + H K +
Sbjct: 84 IENSIVHRVQGVFRRASAKWKDDVQLWLSYVVFCKKWATKPQLSKVFSAMLAIHSNKPAL 143
Query: 228 WIKYAKFEMKMG-EVDRARNVYERAV 252
WI AK+EM+ + AR ++ RA+
Sbjct: 144 WIMAAKWEMEDRLSSESARQLFLRAL 169
>UNIPROTKB|F1SI15 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00390000005033 OMA:GWVYLLQ EMBL:CU570961
Ensembl:ENSSSCT00000005511 Uniprot:F1SI15
Length = 667
Score = 129 (50.5 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 66/264 (25%), Positives = 119/264 (45%)
Query: 71 DYRLRKRKEFEDLIRRVRWNTGV--------WIKYAKWEESQKDFNRARSVWERALEVDY 122
++ + KR FE+ I+R ++ W +Y ++E R ++ER +
Sbjct: 324 EHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA 383
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQI 181
W+KYA+ M+N I R+V+ RA T+ LP+ + + EE GN+ AR I
Sbjct: 384 LYEEFWIKYAKY-MENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNI 442
Query: 182 ---FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ---CHPKVSTW-IKYAKF 234
FE + + + L + E R+ +E A ++ + ++ + + S + IK A+
Sbjct: 443 LRTFEECVLGLAMVR--LRRVSLERRHGNMEEAERLLQDAIKNAKANNESSFYAIKLARH 500
Query: 235 EMKMGE-VDRARNVYERAVEKLADDEEAEQLFVAFAEFEER--CKETER--ARCIYKFAL 289
K+ + + ++R V A+E+ D+E +L++ E E K+ E C K
Sbjct: 501 LFKIQKNLPKSRKVLLEAIER---DKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAIH 557
Query: 290 DHIP-KGRAEDLYRKFVAFEKQYG 312
+P K R RK V F + +G
Sbjct: 558 GSLPIKMRITFSQRK-VEFLEDFG 580
Score = 119 (46.9 bits), Expect = 0.00063, P = 0.00063
Identities = 45/188 (23%), Positives = 85/188 (45%)
Query: 146 NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERW----------MHWMPDQQG- 194
++ D A L+ ++ + ++ I + + + N ++ +RW H P ++
Sbjct: 293 DITDPAKKLITEIENMRHRIIEIHQEMFNY-NEHEVSKRWTFEEGIKRPYFHVKPLEKAQ 351
Query: 195 ---WLSYIKFELRYNEVERARQIYERFV-QCHPKVSTWIKYAKFEMKMGEVDRARNVYER 250
W Y++FE+ ER ++ER V C WIKYAK+ M+ ++ R+V+ R
Sbjct: 352 LKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKY-MENHSIEGVRHVFSR 410
Query: 251 AVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310
A + + + +A FEE+ AR I + + G A R+ V+ E++
Sbjct: 411 ACT--IHLPKKPMVHMLWAAFEEQQGNINEARNILR-TFEECVLGLAMVRLRR-VSLERR 466
Query: 311 YGDREGIE 318
+G+ E E
Sbjct: 467 HGNMEEAE 474
Score = 100 (40.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 38/170 (22%), Positives = 73/170 (42%)
Query: 68 ELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL 127
E ++ + RK F+ + G W KYA E+ + ++ V+ R L+ + L
Sbjct: 104 EQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDL 163
Query: 128 WLKYAEVEMKN------KFINHARNVWDRAVTLLP---RVDQLWYKYIHMEEMLGNVAGA 178
W+ Y + + + + ++ AV R D+LW YI+ E GN+
Sbjct: 164 WIHYINFLKETLDPGDPETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREV 223
Query: 179 RQIFERWMHWMPDQQGWLSYIKF-ELRYNEVERARQIYERFVQCHPKVST 227
I++R + +P Q + +F E N + R E+F+Q ++++
Sbjct: 224 TAIYDRILG-IPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELAS 272
Score = 97 (39.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 42/157 (26%), Positives = 72/157 (45%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
++ W +Y +FE++ G +R ++ER V A EE ++ +A++ E E R
Sbjct: 351 QLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE---FWIKYAKYMEN-HSIEGVRH 406
Query: 284 IYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
++ A H+PK ++ + AFE+Q G+ I +A R F E+ V M +
Sbjct: 407 VFSRACTIHLPKKPM--VHMLWAAFEEQQGN---INEARNILRTF--EECVLGLAM---V 456
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ LE GN E A + + AI N E ++
Sbjct: 457 RLRRVSLERRHGNMEEAERLLQDAIKNAKANNESSFY 493
Score = 91 (37.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 37/156 (23%), Positives = 67/156 (42%)
Query: 79 EFEDLIRRVRWN----TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAE 133
E+E + V N TG W+ ++ E + AR +++ + Y + W KYA+
Sbjct: 78 EYEKFWKTVENNPQDFTG-WVYLLQYVEQENHLMAARKAFDKFF-IHYPYCYGYWKKYAD 135
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH-MEEML--GNVAGARQIFERWMHWM- 189
+E ++ I + V+ R + +P LW YI+ ++E L G+ I + H +
Sbjct: 136 LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETTSTIKGTFEHAVL 195
Query: 190 ---PDQQG---WLSYIKFELRYNEVERARQIYERFV 219
D + W YI +E + IY+R +
Sbjct: 196 AAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRIL 231
Score = 85 (35.0 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 34/161 (21%), Positives = 65/161 (40%)
Query: 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAE-VEMKNKFINHARNVWDRAVTLLPRVDQ 160
E++ +F + + +E + ++ T W+ + VE +N + AR +D+ P
Sbjct: 70 ETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMA-ARKAFDKFFIHYPYCYG 128
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEVERARQIYE 216
W KY +E+ N+ + +++ R + +P W+ YI F L + E I
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETTSTIKG 188
Query: 217 RFVQCHPKVST-------WIKYAKFEMKMGEVDRARNVYER 250
F T W Y +E + G + +Y+R
Sbjct: 189 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDR 229
>UNIPROTKB|Q86UA1 [details] [associations]
symbol:PRPF39 "Pre-mRNA-processing factor 39" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
EMBL:AL121809 CTD:55015 HOGENOM:HOG000010277 HOVERGEN:HBG082194
KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9 EMBL:AK001990 EMBL:BC051886
EMBL:BC125126 EMBL:BC125127 IPI:IPI00789246 IPI:IPI00878754
RefSeq:NP_060392.3 UniGene:Hs.274337 ProteinModelPortal:Q86UA1
SMR:Q86UA1 IntAct:Q86UA1 STRING:Q86UA1 PhosphoSite:Q86UA1
DMDM:223590245 PaxDb:Q86UA1 PRIDE:Q86UA1 Ensembl:ENST00000355765
GeneID:55015 KEGG:hsa:55015 UCSC:uc001wvy.4 UCSC:uc001wwa.1
GeneCards:GC14P045553 H-InvDB:HIX0011621 HGNC:HGNC:20314
HPA:HPA001176 MIM:614907 neXtProt:NX_Q86UA1 PharmGKB:PA142671127
InParanoid:Q86UA1 GenomeRNAi:55015 NextBio:58381
ArrayExpress:Q86UA1 Bgee:Q86UA1 CleanEx:HS_PRPF39
Genevestigator:Q86UA1 GermOnline:ENSG00000185246 Uniprot:Q86UA1
Length = 669
Score = 127 (49.8 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 63/262 (24%), Positives = 116/262 (44%)
Query: 71 DYRLRKRKEFEDLIRRVRWNTGV--------WIKYAKWEESQKDFNRARSVWERALEVDY 122
++ + KR FE+ I+R ++ W +Y ++E R ++ER +
Sbjct: 325 EHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA 384
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQI 181
W+KYA+ M+N I R+V+ RA T+ LP+ + + EE GN+ AR I
Sbjct: 385 LYEEFWIKYAKY-MENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNI 443
Query: 182 FERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQ---CHPKVSTW-IKYAKFEM 236
+ + + L + E R+ +E A + + ++ + + S + +K A+
Sbjct: 444 LKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLF 503
Query: 237 KMGE-VDRARNVYERAVEKLADDEEAEQLFVAFAEFEER--CKETER--ARCIYKFALDH 291
K+ + + ++R V A+E+ D+E +L++ E E K+ E C K
Sbjct: 504 KIQKNLPKSRKVLLEAIER---DKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGS 560
Query: 292 IP-KGRAEDLYRKFVAFEKQYG 312
+P K R RK V F + +G
Sbjct: 561 LPIKMRITFSQRK-VEFLEDFG 581
Score = 102 (41.0 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 40/170 (23%), Positives = 72/170 (42%)
Query: 68 ELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL 127
E ++ + RK F+ + G W KYA E+ + + V+ R L+ + L
Sbjct: 106 EQENHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDL 165
Query: 128 WLKYAEVEMKN------KFINHARNVWDRAVTLLP---RVDQLWYKYIHMEEMLGNVAGA 178
W+ Y + + N R ++ AV R D+LW YI+ E GN+
Sbjct: 166 WIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREV 225
Query: 179 RQIFERWMHWMPDQQGWLSYIKF-ELRYNEVERARQIYERFVQCHPKVST 227
I++R + +P Q + +F E N + R E+F+Q ++++
Sbjct: 226 TAIYDRILG-IPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELAS 274
Score = 93 (37.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 41/157 (26%), Positives = 72/157 (45%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
++ W +Y +FE++ G +R ++ER V A EE ++ +A++ E E R
Sbjct: 352 QLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE---FWIKYAKYMEN-HSIEGVRH 407
Query: 284 IYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
++ A H+PK ++ + AFE+Q G+ I +A + F E+ V M +
Sbjct: 408 VFSRACTIHLPKKPM--VHMLWAAFEEQQGN---INEARNILKTF--EECVLGLAM---V 457
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ LE GN E A + + AI N E ++
Sbjct: 458 RLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFY 494
Score = 91 (37.1 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 38/156 (24%), Positives = 67/156 (42%)
Query: 79 EFEDLIRRVRWN----TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAE 133
E+E + V N TG W+ ++ E + AR ++R + Y + W KYA+
Sbjct: 80 EYEKFWKTVENNPQDFTG-WVYLLQYVEQENHLMAARKAFDRFF-IHYPYCYGYWKKYAD 137
Query: 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH-MEEML--GNVAGARQIFERWMHWM- 189
+E ++ I + V+ R + +P LW YI+ ++E L G+ I + H +
Sbjct: 138 LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVL 197
Query: 190 ---PDQQG---WLSYIKFELRYNEVERARQIYERFV 219
D + W YI +E + IY+R +
Sbjct: 198 AAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRIL 233
Score = 87 (35.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 35/161 (21%), Positives = 65/161 (40%)
Query: 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAE-VEMKNKFINHARNVWDRAVTLLPRVDQ 160
E++ +F + + +E + ++ T W+ + VE +N + AR +DR P
Sbjct: 72 ETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMA-ARKAFDRFFIHYPYCYG 130
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEVERARQIYE 216
W KY +E+ N+ + +++ R + +P W+ YI F L + E I
Sbjct: 131 YWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRG 190
Query: 217 RFVQCHPKVST-------WIKYAKFEMKMGEVDRARNVYER 250
F T W Y +E + G + +Y+R
Sbjct: 191 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDR 231
Score = 60 (26.2 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 26/100 (26%), Positives = 41/100 (41%)
Query: 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367
E + R E+ I KR + + + K + W +Y+ E G ER ++ER +
Sbjct: 325 EHEVSKRWTFEEGI--KRPYFHVKPLEKAQLKN--WKEYLEFEIENGTHERVVVLFERCV 380
Query: 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407
+ EE WI YA Y E + +E R V+
Sbjct: 381 ISCALYEE---------FWIKYAKYMENHS--IEGVRHVF 409
>GENEDB_PFALCIPARUM|PFL1735c [details] [associations]
symbol:PFL1735c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:AE014188 KO:K12867
RefSeq:XP_001350753.1 ProteinModelPortal:Q8I564
EnsemblProtists:PFL1735c:mRNA GeneID:811399 KEGG:pfa:PFL1735c
EuPathDB:PlasmoDB:PF3D7_1235900 HOGENOM:HOG000283457 Uniprot:Q8I564
Length = 1031
Score = 148 (57.2 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 57/260 (21%), Positives = 117/260 (45%)
Query: 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HMEEMLG-NVAGA 178
N + L A + K+ N + V+++A+++ P V ++ YI +++ N++
Sbjct: 759 NVKMVLTLATYLYEKKYFNESFKVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYV 818
Query: 179 RQIFERWMH------WMPDQQG---WLSYIKFELRYNEVERARQIYER---FVQCHPKVS 226
R +F++ ++ ++P + +L Y FE Y +++ IY+ F++ K+
Sbjct: 819 RDLFKQAIYGNDNKTFIPKEFAKHIFLMYANFESNYGFIKKELSIYKEAIPFLEEPDKIK 878
Query: 227 TW-IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY 285
+ I +K G + +AR +E A++ L+DD A QL + + + E + E ER R +Y
Sbjct: 879 FYKIFISKVSRAYG-IQKAREAFEEAIQTLSDDS-ARQLCMIYIDMEYKLNEYERVRALY 936
Query: 286 KFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFD 345
+ + D Y+ + FE +G+ + I KR +N M D
Sbjct: 937 IYTAQYTNPLLYMDFYKDWREFEALHGNENTFREMIRIKRSVLNIFSNSRNNME-DEKQQ 995
Query: 346 YIRLEESVGNKERAREVYER 365
++ K + +E+ E+
Sbjct: 996 KANMDALENTKRKLKEIIEK 1015
>UNIPROTKB|Q8I564 [details] [associations]
symbol:PFL1735c "RNA-processing protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:AE014188 KO:K12867
RefSeq:XP_001350753.1 ProteinModelPortal:Q8I564
EnsemblProtists:PFL1735c:mRNA GeneID:811399 KEGG:pfa:PFL1735c
EuPathDB:PlasmoDB:PF3D7_1235900 HOGENOM:HOG000283457 Uniprot:Q8I564
Length = 1031
Score = 148 (57.2 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 57/260 (21%), Positives = 117/260 (45%)
Query: 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYI--HMEEMLG-NVAGA 178
N + L A + K+ N + V+++A+++ P V ++ YI +++ N++
Sbjct: 759 NVKMVLTLATYLYEKKYFNESFKVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYV 818
Query: 179 RQIFERWMH------WMPDQQG---WLSYIKFELRYNEVERARQIYER---FVQCHPKVS 226
R +F++ ++ ++P + +L Y FE Y +++ IY+ F++ K+
Sbjct: 819 RDLFKQAIYGNDNKTFIPKEFAKHIFLMYANFESNYGFIKKELSIYKEAIPFLEEPDKIK 878
Query: 227 TW-IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY 285
+ I +K G + +AR +E A++ L+DD A QL + + + E + E ER R +Y
Sbjct: 879 FYKIFISKVSRAYG-IQKAREAFEEAIQTLSDDS-ARQLCMIYIDMEYKLNEYERVRALY 936
Query: 286 KFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFD 345
+ + D Y+ + FE +G+ + I KR +N M D
Sbjct: 937 IYTAQYTNPLLYMDFYKDWREFEALHGNENTFREMIRIKRSVLNIFSNSRNNME-DEKQQ 995
Query: 346 YIRLEESVGNKERAREVYER 365
++ K + +E+ E+
Sbjct: 996 KANMDALENTKRKLKEIIEK 1015
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 150 (57.9 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 52/229 (22%), Positives = 104/229 (45%)
Query: 101 EESQKDFN-RA-RSV--WERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLL 155
E+ D N RA +S +ER L + + LW+ Y +++ ++ AR + +RA+ T+
Sbjct: 1437 EDKTGDLNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTIN 1496
Query: 156 PRVDQ----LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERA 211
R +Q +W +++E G F++ + +M + + ++A
Sbjct: 1497 YREEQEKLNIWIALLNLENTFGTDESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQA 1556
Query: 212 RQIYERFVQCHPKV-STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE 270
+Q++ R + KV +TW+ Y F + D + +A+ L E E L FA+
Sbjct: 1557 KQLFNRMTKKFGKVLNTWVLYGSFLLDQNSQDEMHEILAKALNILPKREHIE-LVKKFAQ 1615
Query: 271 FEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIED 319
E + + E+ R +++ + PK R DL+ ++ E + ++ ED
Sbjct: 1616 LEFQKGDPEQGRSLFEGLVADAPK-RI-DLWNVYIDQEIKQDNKTSDED 1662
Score = 128 (50.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 56/251 (22%), Positives = 104/251 (41%)
Query: 156 PRVDQLWYKYIHMEEMLGNVAGARQIFERWM---HWMPDQQG---WLSYIKFELRYNEVE 209
P LW Y+ + L V AR+I ER + ++ +Q+ W++ + E + E
Sbjct: 1462 PNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQEKLNIWIALLNLENTFGTDE 1521
Query: 210 RARQIYERFVQCHPKVSTWIKYAKFEMKMGE-VDRARNVYERAVEKLADDEEAEQLFVAF 268
+++ +Q + K KM E D+A+ ++ R +K L+ +F
Sbjct: 1522 SLEDTFKKSIQYMDSFTMHEKLVNI-YKMSEKFDQAKQLFNRMTKKFGKVLNTWVLYGSF 1580
Query: 269 AEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ 328
++ ++ E + K AL+ +PK +L +KF E Q GD E + R
Sbjct: 1581 L-LDQNSQD-EMHEILAK-ALNILPKREHIELVKKFAQLEFQKGDPE--------QGRSL 1629
Query: 329 YEDEVRKNPMNYDIWFDYIRLEESVGNK----------ERAREVYERAIANVPPAEEKRY 378
+E V P D+W YI E NK + +++ER ++ ++ ++
Sbjct: 1630 FEGLVADAPKRIDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLSKKITRKQAKF 1689
Query: 379 WQRYIYLWINY 389
+ W+NY
Sbjct: 1690 ---FFNKWLNY 1697
Score = 67 (28.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 64 TDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYR 123
++ T+ A ++ + KEF DL + + G W+K AK S +D+ + + E +E +
Sbjct: 158 SEETKSATFKSKTEKEFPDLFKIFK--LGSWLK-AKITTSHEDYKNKKRI-ELTIEPESV 213
Query: 124 NHTL 127
N L
Sbjct: 214 NENL 217
>DICTYBASE|DDB_G0286645 [details] [associations]
symbol:cstf3 "cleavage stimulation factor subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF05843 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0286645
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0006378 GO:GO:0003723
EMBL:AAFI02000089 Gene3D:1.25.40.10 GO:GO:0006379 eggNOG:COG5107
KO:K14408 RefSeq:XP_637594.1 ProteinModelPortal:Q54LG7 PRIDE:Q54LG7
EnsemblProtists:DDB0233707 GeneID:8625734 KEGG:ddi:DDB_G0286645
InParanoid:Q54LG7 OMA:MARDIFE ProtClustDB:CLSZ2430079
Uniprot:Q54LG7
Length = 1065
Score = 147 (56.8 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 58/247 (23%), Positives = 110/247 (44%)
Query: 93 VWIKYAKWEES--QK-DF----NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR 145
+W K +E S QK D NR + + + L Y +W + A +
Sbjct: 398 LWRKLITYERSNPQKFDAVTLRNRVIATYNQCLLCLYHYPDIWYEAATYLADCGDSSGCI 457
Query: 146 NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRY 205
++DR++ LP+ + + Y E A++I+E+ + P+ W+ Y+KF R
Sbjct: 458 AMFDRSLIALPKNLFIHFAYADYLESQKKQPQAKEIYEKILQANPEPLVWIQYMKFSRRT 517
Query: 206 NEVERARQIYERFVQCHPKVS--TWIKYAKFEMKMGEVDR-ARNVYERAVEKLADDEEAE 262
+E R+I++R + P + +I E + + R AR+++E ++K +E
Sbjct: 518 ERIEGPRKIFKR-AKSTPDCTYHVYIALGLIEYYINQDTRMARDIFEIGLKKFP----SE 572
Query: 263 QLFVAF-AEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321
FV F EF E R +++ L ++E ++RKF+ FE Y + + +
Sbjct: 573 IAFVNFYIEFLTNLNEENNTRVLFEKLLTWPSLEKSESIWRKFLDFE--YRQNQDVSSIL 630
Query: 322 VGKRRFQ 328
++R+Q
Sbjct: 631 KLEKRYQ 637
Score = 133 (51.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 45/206 (21%), Positives = 95/206 (46%)
Query: 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLW 162
S K+ ++ R +W + + + N K+ V ++N+ I +++ + L +W
Sbjct: 389 SDKEEHQVR-LWRKLITYERSNPQ---KFDAVTLRNRVIA----TYNQCLLCLYHYPDIW 440
Query: 163 YKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFVQC 221
Y+ G+ +G +F+R + +P +Y + + +A++IYE+ +Q
Sbjct: 441 YEAATYLADCGDSSGCIAMFDRSLIALPKNLFIHFAYADYLESQKKQPQAKEIYEKILQA 500
Query: 222 HPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC-KETER 280
+P+ WI+Y KF + ++ R +++RA K D +++A E ++T
Sbjct: 501 NPEPLVWIQYMKFSRRTERIEGPRKIFKRA--KSTPDC-TYHVYIALGLIEYYINQDTRM 557
Query: 281 ARCIYKFALDHIPKGRA-EDLYRKFV 305
AR I++ L P A + Y +F+
Sbjct: 558 ARDIFEIGLKKFPSEIAFVNFYIEFL 583
Score = 121 (47.7 bits), Expect = 0.00068, P = 0.00068
Identities = 39/159 (24%), Positives = 75/159 (47%)
Query: 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149
N + YA + ESQK +A+ ++E+ L+ + +W++Y + + + I R ++
Sbjct: 470 NLFIHFAYADYLESQKKQPQAKEIYEKILQAN-PEPLVWIQYMKFSRRTERIEGPRKIFK 528
Query: 150 RAVTLLPRVDQLWYKYIHM---EEMLG-NVAGARQIFERWMHWMPDQQGWLS-YIKFELR 204
RA + P D ++ YI + E + + AR IFE + P + +++ YI+F
Sbjct: 529 RAKST-P--DCTYHVYIALGLIEYYINQDTRMARDIFEIGLKKFPSEIAFVNFYIEFLTN 585
Query: 205 YNEVERARQIYERFV---QCHPKVSTWIKYAKFEMKMGE 240
NE R ++E+ + S W K+ FE + +
Sbjct: 586 LNEENNTRVLFEKLLTWPSLEKSESIWRKFLDFEYRQNQ 624
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 156 (60.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 56/253 (22%), Positives = 120/253 (47%)
Query: 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRNHT----LWLKYAE 133
+FE L+ ++ VW+ Y ++ + +AR + ERAL+ +++R +W+ A
Sbjct: 1463 DFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERALKTINFREEAEKLNIWI--AM 1520
Query: 134 VEMKNKFINHA--RNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191
+ ++N F V+ RA + + K + + E+ A ++F+
Sbjct: 1521 LNLENTFGTEETLEEVFSRACQYMDSYT-IHTKLLGIYEISEKFDKAAELFKATAKKFGG 1579
Query: 192 QQG--WLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARN 246
++ W+S+ F + +NE + AR I ++ PK + K+A+ E G+ +R R+
Sbjct: 1580 EKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPERGRS 1639
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY-KFALDHIPKGRAEDLYRKFV 305
++E V AD + L+ + + E + K+ ++ ++ + I + +A+ + K++
Sbjct: 1640 LFEGLV---ADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIITKKITRKQAKFFFNKWL 1696
Query: 306 AFEKQYGDREGIE 318
FE+ GD + IE
Sbjct: 1697 QFEESEGDEKTIE 1709
Score = 149 (57.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 66/344 (19%), Positives = 139/344 (40%)
Query: 66 STELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH 125
+TE+AD + + L W + + + EES +D E R
Sbjct: 1386 NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQD---QEDFTENKKHKHKRRK 1442
Query: 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERW 185
++ +++ + + ++R + P +W Y+ + L + AR++ ER
Sbjct: 1443 ENVVQDKTIDINTRAPESVAD-FERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERA 1501
Query: 186 MHWMPDQQG------WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMG 239
+ + ++ W++ + E + E +++ R Q + K
Sbjct: 1502 LKTINFREEAEKLNIWIAMLNLENTFGTEETLEEVFSRACQYMDSYTIHTKLLGIYEISE 1561
Query: 240 EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAED 299
+ D+A +++ +K ++ + ++V++ +F E + AR I AL +PK +
Sbjct: 1562 KFDKAAELFKATAKKFGGEKVS--IWVSWGDFLISHNEEQEARTILGNALKALPKRNHIE 1619
Query: 300 LYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERA 359
+ RKF E GD E + R +E V P D+W Y+ E +K++
Sbjct: 1620 VVRKFAQLEFAKGDPE--------RGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKV 1671
Query: 360 REVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERT 403
+++ER I ++ ++ + W+ + EE + GD E+T
Sbjct: 1672 EDLFERIITKKITRKQAKF---FFNKWLQF---EESE-GD-EKT 1707
Score = 41 (19.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 63 ITDSTELADYRLRKRKEFEDLIRRV 87
ITD+ L D+ L ++ FED I V
Sbjct: 1117 ITDA--LNDFSLTLKEAFEDKINNV 1139
>DICTYBASE|DDB_G0280363 [details] [associations]
symbol:DDB_G0280363 species:44689 "Dictyostelium
discoideum" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 dictyBase:DDB_G0280363 GO:GO:0005622
EMBL:AAFI02000035 EMBL:AAFI02000036 GO:GO:0006396 Gene3D:1.25.40.10
RefSeq:XP_641155.1 RefSeq:XP_641400.1 ProteinModelPortal:Q54VF4
GeneID:8622534 GeneID:8622535 KEGG:ddi:DDB_G0280363
KEGG:ddi:DDB_G0280519 eggNOG:NOG282937 InParanoid:Q54VF5
ProtClustDB:CLSZ2497219 Uniprot:Q54VF4
Length = 1304
Score = 141 (54.7 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 71/308 (23%), Positives = 138/308 (44%)
Query: 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEM 136
RK F+ L++ V W ++ + K EE +++ RA ++ E+ L D + LW +
Sbjct: 892 RKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAINIVEKGLFEDPKYGPLWFSALRLYE 951
Query: 137 KNK--FINHARNVWDRAVTLLPR-VD-QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQ 192
K F+ RN +RA + R V +++++ +EE N+ +R + + + P+
Sbjct: 952 KTSHGFLQSTRNTVERARQAVSREVTWKIYFEAAQIEERSKNLTLSRAAYVKSVELCPEN 1011
Query: 193 ---QGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWI--KYAKFEMKMGEVDRARN 246
+ WL + EL + + AR++ R ++ P K+ + + +Y++ E G ++++R
Sbjct: 1012 LLWKVWLGGSRTELNADNICIARKLVFRALEEVPSKLRSLVLLEYSRLEEYAGNINKSRR 1071
Query: 247 VYERA-VEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALD-HIPKGRAEDLYRKF 304
+ + A VE D ++F+ E R E A K +L H GR L+
Sbjct: 1072 ILKMAHVEARLD----WKVFLESVLLEMRANNYEAAIKEAKESLKIHSGAGR---LWAAL 1124
Query: 305 VAFEKQYGDREGIEDAI-VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVY 363
+ Q +G++ + V K+ Q+ P + ++W + R+ + AR
Sbjct: 1125 I----QLNQLKGVKSQLNVFKKALQFV------PKSGEVWCEGARIALNNNELREARRFL 1174
Query: 364 ERAIANVP 371
E AI P
Sbjct: 1175 EFAIQFTP 1182
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 145 (56.1 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 56/223 (25%), Positives = 103/223 (46%)
Query: 106 DFNRARSV--WERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRA---VTLLPRVDQ 160
D N +SV +ER L + + LWLKY +++ + AR + +RA +T+ ++
Sbjct: 1522 DANGPQSVADYERLLLGEPNSSLLWLKYMAFQLELGEVEKAREIAERALRTITIGQDTEK 1581
Query: 161 L--WYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERF 218
L W +++E G+ ++F+R + Q+ + ++ + E+A ++++
Sbjct: 1582 LNIWVAMLNLENTYGDDDTLEEVFKRACQYNDTQEIYERLTSIYIQSGKNEKADELFKTA 1641
Query: 219 VQ--CHPKVSTW-IKYAKFEMK-MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274
++ P + I YA F M DR R + RA++ L + E FA+ E R
Sbjct: 1642 LKKKVFPNSPKFFINYATFLYDTMAAPDRGRGLLSRALQSLPKNTHVETTS-KFAQLEFR 1700
Query: 275 CK--ETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDRE 315
+ ER R +++ L PK R DL+ + E + GD E
Sbjct: 1701 SPNGDVERGRTVFEGLLSSFPK-RV-DLWNVLLDLEIKNGDVE 1741
Score = 144 (55.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 54/233 (23%), Positives = 103/233 (44%)
Query: 142 NHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----- 194
N ++V D LL P LW KY+ + LG V AR+I ER + + Q
Sbjct: 1524 NGPQSVADYERLLLGEPNSSLLWLKYMAFQLELGEVEKAREIAERALRTITIGQDTEKLN 1583
Query: 195 -WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVE 253
W++ + E Y + + ++++R Q + + + ++ G+ ++A +++ A++
Sbjct: 1584 IWVAMLNLENTYGDDDTLEEVFKRACQYNDTQEIYERLTSIYIQSGKNEKADELFKTALK 1643
Query: 254 KLADDEEAEQLFVAFAEF-EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312
K + + F+ +A F + +R R + AL +PK + KF E +
Sbjct: 1644 KKVFPN-SPKFFINYATFLYDTMAAPDRGRGLLSRALQSLPKNTHVETTSKFAQLE--FR 1700
Query: 313 DREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYER 365
G D V + R +E + P D+W + LE G+ E+AR +++
Sbjct: 1701 SPNG--D--VERGRTVFEGLLSSFPKRVDLWNVLLDLEIKNGDVEQARFFFKK 1749
Score = 132 (51.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 44/197 (22%), Positives = 88/197 (44%)
Query: 215 YERFVQCHPKVST-WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQL--FVAFAEF 271
YER + P S W+KY F++++GEV++AR + ERA+ + ++ E+L +VA
Sbjct: 1532 YERLLLGEPNSSLLWLKYMAFQLELGEVEKAREIAERALRTITIGQDTEKLNIWVAMLNL 1591
Query: 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331
E + + ++K A + +++Y + + Q G E ++ + +
Sbjct: 1592 ENTYGDDDTLEEVFKRACQY---NDTQEIYERLTSIYIQSGKNEKADELFKTALKKKVFP 1648
Query: 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYAL 391
K +NY + L +++ +R R + RA+ ++P ++ L
Sbjct: 1649 NSPKFFINYATF-----LYDTMAAPDRGRGLLSRALQSLPKNTHVETTSKFAQLEFRSP- 1702
Query: 392 YEELDAGDMERTRDVYQ 408
GD+ER R V++
Sbjct: 1703 -----NGDVERGRTVFE 1714
Score = 44 (20.5 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 296 RAEDLYRKFVAFEKQYGDREGIED 319
+A ++K++ FE++ GD + +E+
Sbjct: 1742 QARFFFKKWLDFEEKKGDEKTVEE 1765
Score = 42 (19.8 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 2 MGSKDADPSLGYLTRKDTEVKL 23
M SK+ DP Y T K+ V L
Sbjct: 295 MSSKEIDPRTDYSTIKEGSVFL 316
>WB|WBGene00006307 [details] [associations]
symbol:suf-1 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0009792 GO:GO:0006397 GO:GO:0000003 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:Z68315 PIR:T21484
RefSeq:NP_495825.1 ProteinModelPortal:Q19866 SMR:Q19866
STRING:Q19866 EnsemblMetazoa:F28C6.6.1 EnsemblMetazoa:F28C6.6.2
GeneID:174380 KEGG:cel:CELE_F28C6.6 UCSC:F28C6.6.1 CTD:174380
WormBase:F28C6.6 InParanoid:Q19866 NextBio:883790
ArrayExpress:Q19866 Uniprot:Q19866
Length = 735
Score = 120 (47.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 50/239 (20%), Positives = 107/239 (44%)
Query: 113 VW-ERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT-LLPRVDQLWYKYIHMEE 170
+W E A+ + +HTL K +V+M ++++RA+T L+ L++ Y +E
Sbjct: 281 IWYEAAMFLQEASHTLDEK-GDVKMAQVLKLETISLYERAITGLMKESKLLYFAYADFQE 339
Query: 171 MLGNVAGARQIFERWM---HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQC-HPKVS 226
+ I++R + H P ++ ++F R AR +++R +
Sbjct: 340 EHKQFEAVKNIYDRLLGIEHINPTLT-YVQLMRFIRRSEGPNNARLVFKRAREDKRTGYQ 398
Query: 227 TWIKYAKFEMK-MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY 285
++ A E M + + A V++ ++K ++ E +A+A+F E R ++
Sbjct: 399 VFVAAALLEYNCMKDKEVAIRVFKLGLKKYENEPE---FGLAYADFLSNLNEDNNTRVVF 455
Query: 286 KFAL--DHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
+ L +P ++ ++ +F+ FE GD I + +R+ YE+ + MN+ +
Sbjct: 456 ERILTSSKLPADKSIRIWDRFLDFESCVGDLASILK-VEKRRKTAYEEAQKDQTMNHSM 513
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 75 RKRKEFEDLIRRVRWNTG-VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAE 133
++R +E L+++ N+G W Y + E K+F ++ R L V N LW Y
Sbjct: 37 QERDFYESLVKQFP-NSGRYWKAYIEHELRSKNFENVEKLFSRCL-VSVLNIDLWKCYIH 94
Query: 134 VEMKNK 139
+ K
Sbjct: 95 YVFETK 100
>WB|WBGene00007111 [details] [associations]
symbol:B0035.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0008340 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0018991 GO:GO:0040010 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 EMBL:Z73102
GeneTree:ENSGT00550000074656 HSSP:P33240 InterPro:IPR008669
Pfam:PF05391 eggNOG:NOG321927 OMA:SQAVMKM PIR:T18650
RefSeq:NP_502136.1 ProteinModelPortal:Q17430 SMR:Q17430
STRING:Q17430 PaxDb:Q17430 EnsemblMetazoa:B0035.12.1
EnsemblMetazoa:B0035.12.2 EnsemblMetazoa:B0035.12.3 GeneID:178053
KEGG:cel:CELE_B0035.12 UCSC:B0035.12.1 CTD:178053 WormBase:B0035.12
HOGENOM:HOG000017964 InParanoid:Q17430 NextBio:899522
Uniprot:Q17430
Length = 836
Score = 119 (46.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 67/243 (27%), Positives = 107/243 (44%)
Query: 96 KYAKWEESQKDFNRARSVWERALE-----VDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150
K A + ++DF R V +ALE D H +WL + E EM ++ ++ N D
Sbjct: 118 KVANDKNKKEDFKFCRDVCSKALENLGTRYDSGGH-IWLIFLEYEMS--YLKNSMNAPDY 174
Query: 151 AVTLLPRVDQLWYKYIHME-EMLGNV-AGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
L +V L+ + +H + L +V A Q + Q L +K YN
Sbjct: 175 Q-RLADQVFALFERALHCPTDQLEDVYVLAEQFCTEFK-----QHHKLEELK--KTYNST 226
Query: 209 ERAR-QI--YERFVQCHPKVSTWIK-YAKFEMKMGEVDRARNVYERAVEKLADDEEAEQL 264
R + Q+ +E +Q +K + E K G R + +ER V +L DDEEA
Sbjct: 227 MRQKEQLSKFEELIQQEETKKQGLKQFFDHEKKSGIPSRIKMAHERLVSELDDDEEAWIA 286
Query: 265 FVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRK-FVAFEKQYGDREGIEDAIVG 323
+ A+A+ E + + A +Y AL H P L+++ +AFE+ E I DA+
Sbjct: 287 YGAWADIELKLPQV--AVKVYSRALRHCPYSFV--LHQQALLAFERDRRPNEEI-DALWE 341
Query: 324 KRR 326
+ R
Sbjct: 342 RAR 344
Score = 63 (27.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 343 WFDYIRLEESVGNKERAREVYERAIANV 370
W + +RLE G+KE AR+ +A+ +V
Sbjct: 442 WIEAVRLERQFGDKENARKYLNKALNSV 469
>UNIPROTKB|G4MRU5 [details] [associations]
symbol:MGG_04558 "Pre-mRNA-processing factor 39"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:CM001231 KO:K13217
RefSeq:XP_003710923.1 ProteinModelPortal:G4MRU5
EnsemblFungi:MGG_04558T0 GeneID:2677921 KEGG:mgr:MGG_04558
Uniprot:G4MRU5
Length = 586
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/141 (24%), Positives = 69/141 (48%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAE-VEMKNKFINHARNVWDRAV 152
W KY +EE++ F R ++ER L W +YA + + RN++ RA
Sbjct: 280 WRKYLDFEEAEGSFVRTAFLYERCLVTCAFYDEFWFRYARWMSAQPDKTEEVRNIYLRAA 339
Query: 153 TLLPRVDQ--LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQ-QGWLSYIKFELRYNEVE 209
T+ + + + ++ + EE G VA AR++ + +P + +S E R+N+++
Sbjct: 340 TIFVPISRPGIRLQFAYFEESCGRVAMAREVHNAILLRLPGCIEVIISLANLERRHNDID 399
Query: 210 RARQIYERFVQCHPKVSTWIK 230
A ++ ++ ++ P+V W K
Sbjct: 400 TAIEVLKQQIES-PEVDIWTK 419
Score = 128 (50.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 52/216 (24%), Positives = 90/216 (41%)
Query: 195 WLSYIKFELRYNEVERARQIYER-FVQCHPKVSTWIKYAKF-EMKMGEVDRARNVYERAV 252
W Y+ FE R +YER V C W +YA++ + + + RN+Y RA
Sbjct: 280 WRKYLDFEEAEGSFVRTAFLYERCLVTCAFYDEFWFRYARWMSAQPDKTEEVRNIYLRAA 339
Query: 253 EKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312
+ + FA FEE C AR ++ L +P G E + E+++
Sbjct: 340 TIFVPISRPG-IRLQFAYFEESCGRVAMAREVHNAILLRLP-GCIEVII-SLANLERRHN 396
Query: 313 DREGIEDAI-VGKRRFQY-EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANV 370
D I+ AI V K++ + E ++ + W + + G E AR V+++
Sbjct: 397 D---IDTAIEVLKQQIESPEVDIWTKAVLVTEWASLLWTVK--GTAEEARAVFQKNAQWY 451
Query: 371 PPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406
+ +W ++I + EL+A ER R++
Sbjct: 452 --GGSRHFWMQWIQFELEQPTSAELEAQHSERLREI 485
>UNIPROTKB|D4A0B1 [details] [associations]
symbol:D4A0B1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 IPI:IPI00951935
Ensembl:ENSRNOT00000065090 ArrayExpress:D4A0B1 Uniprot:D4A0B1
Length = 426
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 59/228 (25%), Positives = 105/228 (46%)
Query: 71 DYRLRKRKEFEDLIRRVRWNTGV--------WIKYAKWEESQKDFNRARSVWERALEVDY 122
++ + KR FE+ I+R ++ W +Y ++E R ++ER +
Sbjct: 204 EHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA 263
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQI 181
W+KYA+ M+N I R+V+ RA T+ LP+ + EE GN+ AR I
Sbjct: 264 LYEEFWIKYAKY-MENHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARII 322
Query: 182 ---FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYE---RFVQCHPKVSTW-IKYAKF 234
FE + + + L + E R+ +E A + + R + + + S + IK A+
Sbjct: 323 LRTFEECVLGLAMVR--LRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLARH 380
Query: 235 EMKMGE-VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC--KETE 279
K+ + + ++R V A+EK D+E +L++ E E C K+ E
Sbjct: 381 LFKIQKNLPKSRKVLLEAIEK---DKENTKLYLNLLEMEYSCDLKQNE 425
Score = 121 (47.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 50/181 (27%), Positives = 81/181 (44%)
Query: 193 QGWLSYIKFELRYNEVERARQIYERFV-QCHPKVSTWIKYAKFEMKMGEVDRARNVYERA 251
+ W Y++FE+ ER ++ER V C WIKYAK+ M+ ++ R+V+ RA
Sbjct: 233 KNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKY-MENHSIEGVRHVFSRA 291
Query: 252 VE-KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310
L A L+ AF E + E AR I + + G A R+ V+ E++
Sbjct: 292 CTVHLPKKPMAHMLWAAFEEQQGNINE---ARIILR-TFEECVLGLAMVRLRR-VSLERR 346
Query: 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESV----GNKERAREVYERA 366
+G+ E E + +D +R N + F I+L + N ++R+V A
Sbjct: 347 HGNMEEAEHLL--------QDAIRNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 398
Query: 367 I 367
I
Sbjct: 399 I 399
Score = 106 (42.4 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 42/189 (22%), Positives = 79/189 (41%)
Query: 128 WLKYAEVEMKNKFINHARNV--WDRAVTLLPRVDQLWYKYI-HMEEMLGNVAGARQIFER 184
W +Y E E++N H R V ++R V ++ W KY +ME ++ G R +F R
Sbjct: 235 WKEYLEFEIENG--THERVVVLFERCVISCALYEEFWIKYAKYMENH--SIEGVRHVFSR 290
Query: 185 --WMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKMGEV 241
+H + + FE + + AR I F +C ++ ++ E + G +
Sbjct: 291 ACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNM 350
Query: 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERC-KETERARCIYKFALDHIPKGRAED- 299
+ A ++ + A+ + E+ + A + K ++R K L+ I K +
Sbjct: 351 EEAEHLLQDAIRNAKSNNESSFYAIKLARHLFKIQKNLPKSR---KVLLEAIEKDKENTK 407
Query: 300 LYRKFVAFE 308
LY + E
Sbjct: 408 LYLNLLEME 416
Score = 102 (41.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 42/157 (26%), Positives = 72/157 (45%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
++ W +Y +FE++ G +R ++ER V A EE ++ +A++ E E R
Sbjct: 231 QLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE---FWIKYAKYMEN-HSIEGVRH 286
Query: 284 IYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
++ A H+PK + + AFE+Q G+ I +A + R F E+ V M +
Sbjct: 287 VFSRACTVHLPKKPMAHML--WAAFEEQQGN---INEARIILRTF--EECVLGLAM---V 336
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ LE GN E A + + AI N E ++
Sbjct: 337 RLRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFY 373
Score = 62 (26.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKF-ELRYNEVERARQIY 215
R D+LW YI+ E GN+ +++R + +P Q + +F E N + R
Sbjct: 83 RSDKLWEMYINWENEQGNLREVTAVYDRILG-IPTQLYSHHFQRFKEHVQNNLPRDLLTG 141
Query: 216 ERFVQCHPKVST 227
E+F+Q ++++
Sbjct: 142 EQFIQLRRELAS 153
Score = 52 (23.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVD---YRNH 125
+W Y WE Q + +V++R L + Y +H
Sbjct: 87 LWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHH 122
Score = 45 (20.9 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 84 IRRVRWNTGVWIKYAKW-----EESQKDFNRA-RSVWERAL---EVDYRNHTLWLKYAEV 134
++ + + +WI Y + + + N R +E A+ D+R+ LW Y
Sbjct: 35 LQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINW 94
Query: 135 EMKNKFINHARNVWDR 150
E + + V+DR
Sbjct: 95 ENEQGNLREVTAVYDR 110
>ASPGD|ASPL0000046692 [details] [associations]
symbol:AN1635 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 EMBL:BN001307
GO:GO:0005622 GO:GO:0006396 eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AACD01000026 KO:K13217 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 RefSeq:XP_659239.1 ProteinModelPortal:Q5BCU5
EnsemblFungi:CADANIAT00008273 GeneID:2874721 KEGG:ani:AN1635.2
Uniprot:Q5BCU5
Length = 588
Score = 133 (51.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 50/229 (21%), Positives = 102/229 (44%)
Query: 64 TDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYR 123
T++T+ Y ++ + + W KY +EE++ + R + ++ER L
Sbjct: 250 TETTKRWTYESEIKRPYFHVTELDEGQLANWRKYLDFEEAEGSYARIQFLYERCLVTCAH 309
Query: 124 NHTLWLKYAE-VEMKNKFINHARNVWDRAVTL-LPRVDQLW-YKYIHMEEMLGNVAGARQ 180
W +YA + + RN++ RA L +P + +Y + EEM G V+ A++
Sbjct: 310 YDEFWQRYARWMSAQPGKEEDVRNIYQRASYLYVPIANPATRLQYAYFEEMCGRVSVAKE 369
Query: 181 IFERWMHWMPDQ-QGWLSYIKFELRYNEVERARQIYERFV---QCH--PKVSTWIKYAKF 234
I E + +P+ + +S R+ +E A ++Y+ + QC K + ++A+
Sbjct: 370 IHEAILINIPNHVETIVSLANMCRRHGGLEAAIEVYKSQLDSPQCEMSTKAALVAEWARL 429
Query: 235 EMKM-GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERAR 282
K+ G + AR V+++ + D + ++ F + TE A+
Sbjct: 430 LWKIKGSTEEARQVFQKNQQYYLDSQAFWHSYLTFELDQPTSAATESAQ 478
>SGD|S000002824 [details] [associations]
symbol:SYF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0071008
"U2-type post-mRNA release spliceosomal complex" evidence=IDA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IDA] [GO:0071006
"U2-type catalytic step 1 spliceosome" evidence=IDA] [GO:0000974
"Prp19 complex" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] [GO:0000384 "first
spliceosomal transesterification activity" evidence=IC] [GO:0000349
"generation of catalytic spliceosome for first transesterification
step" evidence=IDA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 SGD:S000002824 EMBL:U33007
EMBL:BK006938 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0000349
GO:GO:0000974 GO:GO:0071006 GO:GO:0071007 GO:GO:0071008
GO:GO:0071004 eggNOG:NOG289100 KO:K12867 OrthoDB:EOG4DBXP7
GeneTree:ENSGT00550000075140 PIR:S69700 RefSeq:NP_010704.1
ProteinModelPortal:Q04048 SMR:Q04048 DIP:DIP-1681N IntAct:Q04048
MINT:MINT-385933 STRING:Q04048 PaxDb:Q04048 PeptideAtlas:Q04048
EnsemblFungi:YDR416W GeneID:852025 KEGG:sce:YDR416W CYGD:YDR416w
HOGENOM:HOG000065931 OMA:ENIRNDE NextBio:970249
Genevestigator:Q04048 GermOnline:YDR416W Uniprot:Q04048
Length = 859
Score = 111 (44.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/103 (27%), Positives = 52/103 (50%)
Query: 224 KVSTW-IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERAR 282
++ W + +K E +G R +Y+ ++ L + + E + F++FE ET RAR
Sbjct: 705 RLQLWRMCISKAESTLGP-SVTRELYQECIQILPNSKAVE-FVIKFSDFESSIGETIRAR 762
Query: 283 CIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325
I + +P R +L+ F FE ++GD+E +D + K+
Sbjct: 763 EILAYGAKLLPPSRNTELWDSFEIFELKHGDKETYKDMLKMKK 805
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 33/144 (22%), Positives = 63/144 (43%)
Query: 71 DYRLRKRKE--FEDLIRRVRWNTGVWIKYAK-WEESQKDFNRARSVWERALEVDYRNHTL 127
D +R ++ FE I++ N W +Y + W+E + + R ++ER + ++
Sbjct: 15 DENIRNDEDVAFEYEIQKTPQNILTWKRYIEYWKEEGRTDKQIRWLYERFCSQFVTDTSI 74
Query: 128 WLKYAEVEMKNKFINHARNVW--DRAVTLLPR-VDQLWYKYIHM--EE----MLGN-VAG 177
W Y E + + +R W R + R D++ Y+ + E+ M+ + +A
Sbjct: 75 WEDYIRWESTKEVVETSRIFWLFQRCLKSCVRDCDRICLSYLELAIEQYDLAMIRHALAS 134
Query: 178 ARQIFERWMHWMPDQQGWLSYIKF 201
+ ER MH ++ W IKF
Sbjct: 135 SLMKMEREMH----RKVWDPVIKF 154
Score = 59 (25.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 162 WYKYIHMEEMLGNV-AGARQIFERWM-HWMPDQQGWLSYIKFELRYNEVERARQIYERFV 219
W +YI + G R ++ER+ ++ D W YI++E VE +R I+ F
Sbjct: 40 WKRYIEYWKEEGRTDKQIRWLYERFCSQFVTDTSIWEDYIRWESTKEVVETSR-IFWLFQ 98
Query: 220 QC 221
+C
Sbjct: 99 RC 100
>RGD|1305901 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA, subunit
3, 77kDa" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 RGD:1305901
GO:GO:0005634 GO:GO:0006397 GeneTree:ENSGT00390000006758
IPI:IPI00373657 Ensembl:ENSRNOT00000016318 UCSC:RGD:1305901
Uniprot:F1M4W7
Length = 647
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 48/223 (21%), Positives = 99/223 (44%)
Query: 113 VWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHMEEM 171
+W A + ++ L + ++ F + A N+++RA+ TLL + L++ Y EE
Sbjct: 223 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 282
Query: 172 LGNVAGARQIFERWM--HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTW 228
I+ R + + ++ Y+KF R ++ R I+++ + + +
Sbjct: 283 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 342
Query: 229 IKYAKFEMKMGEVDR--ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286
+ A E + D+ A ++E ++K D E +A+ ++ E R +++
Sbjct: 343 VTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFE 398
Query: 287 FALDH--IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327
L +P ++ +++ +F+AFE GD I V KRRF
Sbjct: 399 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK--VEKRRF 439
>UNIPROTKB|Q9NYH9 [details] [associations]
symbol:UTP6 "U3 small nucleolar RNA-associated protein 6
homolog" species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005730
Gene3D:1.25.40.10 GO:GO:0006364 eggNOG:COG5191 KO:K14557
InterPro:IPR013949 Pfam:PF08640 EMBL:AF244135 EMBL:AF334386
EMBL:BC015454 EMBL:BC035325 EMBL:AJ272197 IPI:IPI00020128
RefSeq:NP_060898.2 UniGene:Hs.589862 ProteinModelPortal:Q9NYH9
SMR:Q9NYH9 IntAct:Q9NYH9 MINT:MINT-1435439 STRING:Q9NYH9
PhosphoSite:Q9NYH9 DMDM:134047946 SWISS-2DPAGE:Q9NYH9 PaxDb:Q9NYH9
PRIDE:Q9NYH9 Ensembl:ENST00000261708 GeneID:55813 KEGG:hsa:55813
UCSC:uc002hgq.3 CTD:55813 GeneCards:GC17M030187 HGNC:HGNC:18279
HPA:HPA025936 neXtProt:NX_Q9NYH9 PharmGKB:PA142672224
HOGENOM:HOG000285956 HOVERGEN:HBG051886 InParanoid:Q9NYH9
OMA:EKEQESC OrthoDB:EOG4RBQJ7 GenomeRNAi:55813 NextBio:60986
ArrayExpress:Q9NYH9 Bgee:Q9NYH9 CleanEx:HS_UTP6
Genevestigator:Q9NYH9 GermOnline:ENSG00000108651 Uniprot:Q9NYH9
Length = 597
Score = 98 (39.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 137 KNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ-IFERWM-HWMPDQQG 194
K FIN+ + + + R ++ Y + +E+ ++ Q +F+R W D Q
Sbjct: 51 KEDFINYVQYEINLLELIQRRRTRIGYSF-KKDEIENSIVHRVQGVFQRASAKWKDDVQL 109
Query: 195 WLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMG-EVDRARNVYERAV 252
WLSY+ F ++ R +++ + H K + WI AK+EM+ + AR ++ RA+
Sbjct: 110 WLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRAL 169
Score = 85 (35.0 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 49/205 (23%), Positives = 93/205 (45%)
Query: 82 DLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHT-LWLKYAEVEMKNKF 140
+LI+R R T + + K E +R + V++RA +++ LWL Y V K+
Sbjct: 66 ELIQRRR--TRIGYSFKKDEIENSIVHRVQGVFQRA-SAKWKDDVQLWLSY--VAFCKKW 120
Query: 141 INHAR--NVWDRAVTLLPRVDQLWYKYI--HMEEMLGNVAGARQIFERWMHWMPD-QQGW 195
R V+ + + LW ME+ L + + ARQ+F R + + P+ + +
Sbjct: 121 ATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSES-ARQLFLRALRFHPECPKLY 179
Query: 196 LSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKL 255
Y + EL + E+ R+ E F + V Y++ E+ GE+ A +Y+ +V +
Sbjct: 180 KEYFRMELMH--AEKLRKEKEEFEKASMDVEN-PDYSE-EILKGEL--AWIIYKNSVSII 233
Query: 256 ADDEEAEQLFVAFAEFEERCKETER 280
E L ++ A+ + K+ ++
Sbjct: 234 KGAEFHVSL-LSIAQLFDFAKDLQK 257
Score = 79 (32.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 34/139 (24%), Positives = 61/139 (43%)
Query: 264 LFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVG 323
L++++AE+ E K E ++K AL + + L K++ + + G G + A
Sbjct: 440 LWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKYLDWAYRSG---GYKKA--- 493
Query: 324 KRRFQYEDEVRKNPMNYDIWFDYIRLEESVG--NKERAREVYERAIANVPPAEEKRYWQR 381
+ F+ E R P + D + I+ E+ N RE YERA+ A+ W
Sbjct: 494 RAVFKSLQESR--PFSVDFFRKMIQFEKEQESCNMANIREYYERALREFGSADSD-LWMD 550
Query: 382 YIYLWINYALYEELDAGDM 400
Y+ +N+ L + G +
Sbjct: 551 YMKEELNHPLGRPENCGQI 569
>UNIPROTKB|E2R479 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 CTD:1479 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:AAEX03011399 RefSeq:XP_533159.2
ProteinModelPortal:E2R479 Ensembl:ENSCAFT00000011665 GeneID:475948
KEGG:cfa:475948 NextBio:20851693 Uniprot:E2R479
Length = 717
Score = 132 (51.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 49/229 (21%), Positives = 103/229 (44%)
Query: 113 VWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHMEEM 171
+W A + ++ L + ++ F + A N+++RA+ TLL + L++ Y EE
Sbjct: 293 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 352
Query: 172 LGNVAGARQIFERWM--HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTW 228
I+ R + + ++ Y+KF R ++ R I+++ + + +
Sbjct: 353 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVY 412
Query: 229 IKYAKFEMKMGEVDR--ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286
+ A E + D+ A ++E ++K D E +A+ ++ E R +++
Sbjct: 413 VTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFE 468
Query: 287 FALDH--IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ-YEDE 332
L +P ++ +++ +F+AFE GD I V KRRF +++E
Sbjct: 469 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK--VEKRRFTAFKEE 515
>UNIPROTKB|Q12996 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0006379 "mRNA
cleavage" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
GO:GO:0005654 EMBL:CH471064 Reactome:REACT_1675 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006379
GO:GO:0006369 Reactome:REACT_78 EMBL:U15782 EMBL:AK290836
EMBL:AC131263 EMBL:AL121926 EMBL:BC009792 EMBL:BC010533
EMBL:BC059948 EMBL:BC108319 EMBL:BM014288 IPI:IPI00015195
IPI:IPI00382661 IPI:IPI00651748 PIR:S50852 RefSeq:NP_001028677.1
RefSeq:NP_001028678.1 RefSeq:NP_001317.1 UniGene:Hs.44402
ProteinModelPortal:Q12996 SMR:Q12996 DIP:DIP-48674N IntAct:Q12996
STRING:Q12996 PhosphoSite:Q12996 DMDM:71153231 PaxDb:Q12996
PeptideAtlas:Q12996 PRIDE:Q12996 DNASU:1479 Ensembl:ENST00000323959
Ensembl:ENST00000431742 Ensembl:ENST00000438862 GeneID:1479
KEGG:hsa:1479 UCSC:uc001muh.3 CTD:1479 GeneCards:GC11M033106
H-InvDB:HIX0021822 HGNC:HGNC:2485 HPA:HPA039743 HPA:HPA040168
MIM:600367 neXtProt:NX_Q12996 PharmGKB:PA26987 eggNOG:COG5107
HOGENOM:HOG000231786 HOVERGEN:HBG053813 InParanoid:Q12996 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF PhylomeDB:Q12996 GenomeRNAi:1479
NextBio:6077 PMAP-CutDB:Q12996 ArrayExpress:Q12996 Bgee:Q12996
CleanEx:HS_CSTF3 Genevestigator:Q12996 GermOnline:ENSG00000176102
Uniprot:Q12996
Length = 717
Score = 132 (51.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 49/229 (21%), Positives = 103/229 (44%)
Query: 113 VWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHMEEM 171
+W A + ++ L + ++ F + A N+++RA+ TLL + L++ Y EE
Sbjct: 293 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 352
Query: 172 LGNVAGARQIFERWM--HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTW 228
I+ R + + ++ Y+KF R ++ R I+++ + + +
Sbjct: 353 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVY 412
Query: 229 IKYAKFEMKMGEVDR--ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286
+ A E + D+ A ++E ++K D E +A+ ++ E R +++
Sbjct: 413 VTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFE 468
Query: 287 FALDH--IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ-YEDE 332
L +P ++ +++ +F+AFE GD I V KRRF +++E
Sbjct: 469 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK--VEKRRFTAFKEE 515
>MGI|MGI:1351825 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA,
subunit 3" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843
SMART:SM00386 MGI:MGI:1351825 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF EMBL:BC003241 IPI:IPI00116929
RefSeq:NP_663504.1 UniGene:Mm.259876 UniGene:Mm.479443 PDB:2OND
PDB:2OOE PDBsum:2OND PDBsum:2OOE ProteinModelPortal:Q99LI7
SMR:Q99LI7 STRING:Q99LI7 PhosphoSite:Q99LI7 PaxDb:Q99LI7
PRIDE:Q99LI7 Ensembl:ENSMUST00000028599 GeneID:228410
KEGG:mmu:228410 GeneTree:ENSGT00390000006758 InParanoid:Q99LI7
ChiTaRS:CSTF3 EvolutionaryTrace:Q99LI7 NextBio:378988 Bgee:Q99LI7
Genevestigator:Q99LI7 GermOnline:ENSMUSG00000027176 Uniprot:Q99LI7
Length = 717
Score = 132 (51.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 48/223 (21%), Positives = 99/223 (44%)
Query: 113 VWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHMEEM 171
+W A + ++ L + ++ F + A N+++RA+ TLL + L++ Y EE
Sbjct: 293 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 352
Query: 172 LGNVAGARQIFERWM--HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTW 228
I+ R + + ++ Y+KF R ++ R I+++ + + +
Sbjct: 353 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 412
Query: 229 IKYAKFEMKMGEVDR--ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286
+ A E + D+ A ++E ++K D E +A+ ++ E R +++
Sbjct: 413 VTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFE 468
Query: 287 FALDH--IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327
L +P ++ +++ +F+AFE GD I V KRRF
Sbjct: 469 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK--VEKRRF 509
>UNIPROTKB|Q5F4A0 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF GeneTree:ENSGT00390000006758
EMBL:AADN02065603 EMBL:AJ851400 IPI:IPI00592390
RefSeq:NP_001012586.1 UniGene:Gga.22714 SMR:Q5F4A0 STRING:Q5F4A0
Ensembl:ENSGALT00000019104 GeneID:421595 KEGG:gga:421595
InParanoid:Q5F4A0 NextBio:20824338 Uniprot:Q5F4A0
Length = 718
Score = 132 (51.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 49/229 (21%), Positives = 103/229 (44%)
Query: 113 VWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHMEEM 171
+W A + ++ L + ++ F + A N+++RA+ TLL + L++ Y EE
Sbjct: 294 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 353
Query: 172 LGNVAGARQIFERWM--HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTW 228
I+ R + + ++ Y+KF R ++ R I+++ + + +
Sbjct: 354 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVY 413
Query: 229 IKYAKFEMKMGEVDR--ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286
+ A E + D+ A ++E ++K D E +A+ ++ E R +++
Sbjct: 414 VTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFE 469
Query: 287 FALDH--IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ-YEDE 332
L +P ++ +++ +F+AFE GD I V KRRF +++E
Sbjct: 470 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK--VEKRRFTAFKEE 516
>ASPGD|ASPL0000073973 [details] [associations]
symbol:AN4892 species:162425 "Emericella nidulans"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:BN001303 EMBL:AACD01000084
eggNOG:COG5107 KO:K14408 RefSeq:XP_662496.1 GeneID:2872687
KEGG:ani:AN4892.2 HOGENOM:HOG000197404 OMA:QDQQKMD
OrthoDB:EOG49S9G9 Uniprot:Q5B3I8
Length = 1075
Score = 120 (47.3 bits), Expect = 0.00088, P = 0.00088
Identities = 32/127 (25%), Positives = 58/127 (45%)
Query: 156 PRVD-QLWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKFELRYNEVERARQ 213
PR D W + I+ + AR ++ER++ P + W++Y E NE+ R Q
Sbjct: 252 PRGDIPAWLELINEHRSRNRIDSARDVYERFLKVFPLSAEMWVAYATMESELNELFRLEQ 311
Query: 214 IYERFVQCHPKVSTWIKYAKFEMKMGEVD-----RARNV----YERAVEKLADDEEAEQL 264
I+ R + P V W Y + + + +AR V YE A++ + D+E+ +
Sbjct: 312 IFNRTLLTIPAVQLWTVYLDYVRRRNPLSTDTTGQARKVISSAYELALQHIGMDKESGSI 371
Query: 265 FVAFAEF 271
+ + +F
Sbjct: 372 WADYIQF 378
Score = 101 (40.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 30/105 (28%), Positives = 50/105 (47%)
Query: 65 DSTELADYRLRKRKE--FEDLIRR-VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD 121
DS A RL + ED IR R + W++ S+ + AR V+ER L+V
Sbjct: 227 DSPSTAKGRLPHDRVGILEDRIREDPRGDIPAWLELINEHRSRNRIDSARDVYERFLKVF 286
Query: 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166
+ +W+ YA +E + + +++R + +P V QLW Y+
Sbjct: 287 PLSAEMWVAYATMESELNELFRLEQIFNRTLLTIPAV-QLWTVYL 330
Score = 81 (33.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 27/108 (25%), Positives = 50/108 (46%)
Query: 173 GNVAGARQIF-ERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTW-IK 230
G V G+RQ+F + +++ E + A +I+ER + P+ + ++
Sbjct: 695 GEVPGSRQVFADARKRGRITSDVYIASALIEYHCYKDPAATKIFERGAKLFPEDENFALE 754
Query: 231 YAKFEMKMGEVDRARNVYERAVEKLADDEE----AEQLFVAFAEFEER 274
Y K + + ++ AR V+E V KLA + E + +F E+E R
Sbjct: 755 YLKHLIDINDIINARAVFEMTVRKLAANPENVHKTKPIFAFLHEYESR 802
Score = 76 (31.8 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 27/101 (26%), Positives = 49/101 (48%)
Query: 178 ARQIFERWMHWMPDQQGW-LSYIKFELRYNEVERARQIYERFVQ---CHPKVSTWIK--Y 231
A +IFER P+ + + L Y+K + N++ AR ++E V+ +P+ K +
Sbjct: 734 ATKIFERGAKLFPEDENFALEYLKHLIDINDIINARAVFEMTVRKLAANPENVHKTKPIF 793
Query: 232 A---KFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269
A ++E + G++ + N+ R E DD EQ F+
Sbjct: 794 AFLHEYESRYGDLVQVINLETRMRELFPDDPTLEQFAHRFS 834
>UNIPROTKB|F1NLG7 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 InterPro:IPR013949 Pfam:PF08640
OMA:EKEQESC GeneTree:ENSGT00390000016493 EMBL:AADN02030009
IPI:IPI00585249 Ensembl:ENSGALT00000005162 ArrayExpress:F1NLG7
Uniprot:F1NLG7
Length = 599
Score = 114 (45.2 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 46/182 (25%), Positives = 87/182 (47%)
Query: 111 RSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170
R+V ++A ++Y+ L+ K FIN+ + + + R + Y + EE
Sbjct: 31 RAVLKKATALEYKIQRRALR------KEDFINYIQYEINLLELIKKRRARTGYSF-KKEE 83
Query: 171 MLGNVAG-ARQIFERWM-HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVST 227
+ ++ +F+R W D Q WLS++ F ++N + +++ + HP K +
Sbjct: 84 IESSIMHRVHSLFKRATGKWKEDVQLWLSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPAL 143
Query: 228 WIKYAKFEMKMG-EVDRARNVYERAVE------KLADDEEAEQLFVAFAEFEERCKETER 280
WI AK+EM+ + AR+++ RA+ KL + +L A + +E+ KE ER
Sbjct: 144 WIMAAKWEMETRLSSESARHLFLRALRFHPECPKLYQEYFRMELMNAEKQRKEK-KELER 202
Query: 281 AR 282
A+
Sbjct: 203 AK 204
Score = 60 (26.2 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 342 IWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
+W ++ E +KE +Y+R++ V PAE ++Y+
Sbjct: 440 LWTLWVEWSEVTNSKEDTEALYQRSLHAVAPAESVTMKEKYL 481
>FB|FBgn0039600 [details] [associations]
symbol:CG1646 species:7227 "Drosophila melanogaster"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 InterPro:IPR001623 EMBL:AE014297 Gene3D:1.25.40.10
SMART:SM00271 GO:GO:0000398 GO:GO:0000381 eggNOG:COG5107
GO:GO:0005685 GeneTree:ENSGT00390000005033 KO:K13217 EMBL:AY051737
RefSeq:NP_001097957.1 RefSeq:NP_001097958.1 RefSeq:NP_651634.1
RefSeq:NP_733256.2 RefSeq:NP_788753.1 RefSeq:NP_788754.2
UniGene:Dm.31288 ProteinModelPortal:Q7KRW8 SMR:Q7KRW8 IntAct:Q7KRW8
MINT:MINT-820225 STRING:Q7KRW8 PaxDb:Q7KRW8 PRIDE:Q7KRW8
EnsemblMetazoa:FBtr0085322 GeneID:43399 KEGG:dme:Dmel_CG1646
UCSC:CG1646-RB FlyBase:FBgn0039600 InParanoid:Q7KRW8 OMA:IRWENES
OrthoDB:EOG4ZKH2F PhylomeDB:Q7KRW8 GenomeRNAi:43399 NextBio:833726
Bgee:Q7KRW8 Uniprot:Q7KRW8
Length = 1066
Score = 109 (43.4 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 43/174 (24%), Positives = 78/174 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLI---RRVRWN----TGVWIKYAKWEESQKDFNRARS 112
K+K D D + ++RK+ DL R V+ + TG W ++ +++ D AR
Sbjct: 343 KEKDKDKDNNKD-KEKERKKLPDLDKYWRAVKEDSTDFTG-WTYLLQYVDNESDAEAARE 400
Query: 113 VWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI-HMEEM 171
++ L + W KYA+ E + + V++R + +P LW Y+ H++
Sbjct: 401 AYDTFLSHYPYCYGYWRKYADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKSN 460
Query: 172 LGN-VAGARQIFER-----WMHWMPDQQGWLSYIKFELRYNEVERARQIYERFV 219
G+ R +ER + + D+ W +YI++E R QIY+R +
Sbjct: 461 HGDDETFVRSQYERAVKACGLEFRSDKL-WDAYIRWENESKRYHRVVQIYDRLL 513
Score = 102 (41.0 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 50/262 (19%), Positives = 108/262 (41%)
Query: 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYK---YIH-MEEMLGNVAGARQIFE 183
W Y + E++ +++R + D+ W K Y+ +E+ G V R ++
Sbjct: 708 WKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVRDVYR 767
Query: 184 RW--MHWMPDQQGW-LSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKF--EMKM 238
R +H PD+ L + FE + A +I +R Q P + + Y + E +
Sbjct: 768 RACRIHH-PDKPSLHLMWAAFEECQMNFDDAAEILQRIDQRCPNLLQ-LSYRRINVERRR 825
Query: 239 GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER-CKETERARCIYKFALDHIPKGRA 297
G +D+ R +Y+ +E + A L + +A F + C + + + AL+ P
Sbjct: 826 GALDKCRELYKHYIESTKNKGIAGSLAIKYARFLNKICHDLDAGLAALQQALERDPANTR 885
Query: 298 EDLYRKFVAFEK-QYGDREGIE--DAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG 354
L + ++ + ++E +E D + + + + +V + D+ +
Sbjct: 886 VALQMIDLCLQRPKVDEQEVVEIMDKFMARADIEPDQKVLFAQRKVEFLEDFGSTARGLQ 945
Query: 355 NKERAREVYERAIANVPPAEEK 376
+ +RA ++A+ A++K
Sbjct: 946 DAQRA---LQQALTKAKEAQKK 964
Score = 101 (40.6 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 37/157 (23%), Positives = 64/157 (40%)
Query: 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ 160
E+ +K W RA++ D + T W + AR +D ++ P
Sbjct: 356 EKERKKLPDLDKYW-RAVKEDSTDFTGWTYLLQYVDNESDAEAAREAYDTFLSHYPYCYG 414
Query: 161 LWYKYIHMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF-ELRYNEVER-ARQIYER 217
W KY E+ G A ++FER + +P W+ Y+ + + + E R YER
Sbjct: 415 YWRKYADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYER 474
Query: 218 FVQ-CHPKVST---WIKYAKFEMKMGEVDRARNVYER 250
V+ C + + W Y ++E + R +Y+R
Sbjct: 475 AVKACGLEFRSDKLWDAYIRWENESKRYHRVVQIYDR 511
Score = 95 (38.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 193 QGWLSYIKFELRYNEVERARQIYER-FVQCHPKVSTWIKYAKF----EMKMGEVDRARNV 247
+ W Y+ FE+ + ER ++ER + C W+K ++ E + G VD R+V
Sbjct: 706 KNWKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVRDV 765
Query: 248 YERAVEKLADDEEAEQLFVAFAEFEERCK 276
Y RA D+ + L + +A FEE C+
Sbjct: 766 YRRACRIHHPDKPS--LHLMWAAFEE-CQ 791
Score = 78 (32.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 70 ADYRLRKR------KEFEDLIRRVRWNTGVWIKYAKWEESQK--DFNRARSVWERALE-- 119
ADY RK K FE + + + +WI Y +S D RS +ERA++
Sbjct: 420 ADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKAC 479
Query: 120 -VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL 154
+++R+ LW Y E ++K + ++DR + +
Sbjct: 480 GLEFRSDKLWDAYIRWENESKRYHRVVQIYDRLLAI 515
Score = 67 (28.6 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 32/146 (21%), Positives = 64/146 (43%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE-FEERCKETERAR 282
++ W Y FE++ G+ +R ++ER + A +E + + E E++ + R
Sbjct: 704 QLKNWKDYLDFEIEKGDRERVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVR 763
Query: 283 CIYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD 341
+Y+ A H P L+ + AFE+ + +DA +R ++ P
Sbjct: 764 DVYRRACRIHHPD--KPSLHLMWAAFEEC---QMNFDDAAEILQRID-----QRCPNLLQ 813
Query: 342 IWFDYIRLEESVGNKERAREVYERAI 367
+ + I +E G ++ RE+Y+ I
Sbjct: 814 LSYRRINVERRRGALDKCRELYKHYI 839
Score = 65 (27.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMER 402
W DY+ E G++ER ++ER + +E +W + + Y E +G ++
Sbjct: 708 WKDYLDFEIEKGDRERVLVLFERCLIACALYDE--FWLKML----RYLESLEDQSGVVDL 761
Query: 403 TRDVYQ 408
RDVY+
Sbjct: 762 VRDVYR 767
>UNIPROTKB|A8E4M9 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
CTD:55015 GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9
eggNOG:NOG298273 EMBL:DAAA02052958 EMBL:BC149776 IPI:IPI00710325
RefSeq:NP_001103259.1 UniGene:Bt.27128 Ensembl:ENSBTAT00000003373
GeneID:505547 KEGG:bta:505547 InParanoid:A8E4M9 NextBio:20867193
Uniprot:A8E4M9
Length = 548
Score = 128 (50.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 66/264 (25%), Positives = 119/264 (45%)
Query: 71 DYRLRKRKEFEDLIRRVRWNTGV--------WIKYAKWEESQKDFNRARSVWERALEVDY 122
++ + KR FE+ I+R ++ W +Y ++E R ++ER +
Sbjct: 204 EHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA 263
Query: 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQI 181
W+KYA+ M+N I R+V+ RA T+ LP+ + + EE GN+ AR I
Sbjct: 264 LYEEFWIKYAKY-MENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNI 322
Query: 182 ---FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ---CHPKVSTW-IKYAKF 234
FE + + + L + E R+ +E A ++ + ++ + + S + IK A+
Sbjct: 323 LRTFEECVLGLAMVR--LRRVSLERRHGNMEEAERLLQEAIKNAKSNNESSFYAIKLARH 380
Query: 235 EMKMGE-VDRARNVYERAVEKLADDEEAEQLFVAFAEFEER--CKETER--ARCIYKFAL 289
K+ + + ++R V A+E+ D+E +L++ E E K+ E C K
Sbjct: 381 LFKIQKNLPKSRKVLLEAIER---DKENTKLYLNLLEMEYSGDLKQNEDNILNCFDKAIH 437
Query: 290 DHIP-KGRAEDLYRKFVAFEKQYG 312
+P K R RK V F + +G
Sbjct: 438 GSLPIKMRITFSQRK-VEFLEDFG 460
Score = 114 (45.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 36/127 (28%), Positives = 61/127 (48%)
Query: 193 QGWLSYIKFELRYNEVERARQIYERFV-QCHPKVSTWIKYAKFEMKMGEVDRARNVYERA 251
+ W Y++FE+ ER ++ER V C WIKYAK+ M+ ++ R+V+ RA
Sbjct: 233 KNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKY-MENHSIEGVRHVFSRA 291
Query: 252 VEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311
+ + + +A FEE+ AR I + + G A R+ V+ E+++
Sbjct: 292 CT--IHLPKKPMVHMLWAAFEEQQGNINEARNILR-TFEECVLGLAMVRLRR-VSLERRH 347
Query: 312 GDREGIE 318
G+ E E
Sbjct: 348 GNMEEAE 354
Score = 114 (45.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 46/203 (22%), Positives = 86/203 (42%)
Query: 128 WLKYAEVEMKNKFINHARNV--WDRAVTLLPRVDQLWYKYI-HMEEMLGNVAGARQIFER 184
W +Y E E++N H R V ++R V ++ W KY +ME ++ G R +F R
Sbjct: 235 WKEYLEFEIENG--THERVVVLFERCVISCALYEEFWIKYAKYMENH--SIEGVRHVFSR 290
Query: 185 --WMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKMGEV 241
+H + + FE + + AR I F +C ++ ++ E + G +
Sbjct: 291 ACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVSLERRHGNM 350
Query: 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERC-KETERARCIYKFALDHIPKGRAED- 299
+ A + + A++ + E+ + A + K ++R K L+ I + +
Sbjct: 351 EEAERLLQEAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSR---KVLLEAIERDKENTK 407
Query: 300 LYRKFVAFEKQYGDREGIEDAIV 322
LY + E GD + ED I+
Sbjct: 408 LYLNLLEMEYS-GDLKQNEDNIL 429
Score = 99 (39.9 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 42/157 (26%), Positives = 72/157 (45%)
Query: 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283
++ W +Y +FE++ G +R ++ER V A EE ++ +A++ E E R
Sbjct: 231 QLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEE---FWIKYAKYMEN-HSIEGVRH 286
Query: 284 IYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342
++ A H+PK ++ + AFE+Q G+ I +A R F E+ V M +
Sbjct: 287 VFSRACTIHLPKKPM--VHMLWAAFEEQQGN---INEARNILRTF--EECVLGLAM---V 336
Query: 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379
+ LE GN E A + + AI N E ++
Sbjct: 337 RLRRVSLERRHGNMEEAERLLQEAIKNAKSNNESSFY 373
Score = 61 (26.5 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRY-NEVERARQIY 215
R D+LW YI+ E GN+ I++R + +P Q + +F+ N + R
Sbjct: 83 RSDRLWEMYINWENEQGNLREVTAIYDRILG-IPTQLYSHHFQRFKDHVQNNLPRDLLTG 141
Query: 216 ERFVQCHPKVST 227
E+F+Q ++++
Sbjct: 142 EQFIQLRRELAS 153
Score = 51 (23.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVD---YRNH 125
+W Y WE Q + ++++R L + Y +H
Sbjct: 87 LWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHH 122
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 130 (50.8 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 68/316 (21%), Positives = 125/316 (39%)
Query: 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL 161
E + + N+ E L + N+ +++Y ++ K + R + + P L
Sbjct: 43 EDEAESNQQIVTLESELSANPYNYDAYVQYIKLLRKTANLEKLRQAREAMSAIFPLSPSL 102
Query: 162 WYKYIHMEEMLG---NVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERF 218
W ++ E L NV ++ER + W Y+ F L ++ R E
Sbjct: 103 WLEWARDEASLAASENVPEIVMLYERGLSDYQSVSLWCDYLSFMLEFDPSVRGYPS-EGI 161
Query: 219 VQCHPKVSTWIKYAKFEMKMGE-VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKE 277
+ I A F + G + +E+ V LA +EA+ EER K+
Sbjct: 162 SKMRSLFERAIPAAGFHVTEGNRIWEGYREFEQGV--LATIDEAD--------IEERNKQ 211
Query: 278 TERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DRE-GIED--------AIVGKR-- 325
+R R I+ L +P + +E + G D + G +D A+ K+
Sbjct: 212 IQRIRSIFHRHLS-VPLENLSSTLIAYKTWELEQGIDLDIGSDDLSKVSHQVAVANKKAQ 270
Query: 326 -----RFQYEDEVRKNPMN----YDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376
R E+ + K ++ + + +YI+ E++ G+ R + +YERA+A P + +
Sbjct: 271 QMYSERAHLEENISKQDLSDTEKFQEFMNYIKFEKTSGDPTRVQAIYERAVAEYPVSSD- 329
Query: 377 RYWQRYIYLWINYALY 392
LWI+Y +Y
Sbjct: 330 --------LWIDYTVY 337
Score = 98 (39.6 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 44/165 (26%), Positives = 71/165 (43%)
Query: 95 IKYAKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAEVEMKNKF-----INHARNVW 148
I A EE K R RS++ R L V N + + Y E++ + V
Sbjct: 200 IDEADIEERNKQIQRIRSIFHRHLSVPLENLSSTLIAYKTWELEQGIDLDIGSDDLSKVS 259
Query: 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208
+ + Q++ + H+EE N++ +Q + Q +++YIKFE +
Sbjct: 260 HQVAVANKKAQQMYSERAHLEE---NIS--KQDLSDTEKF----QEFMNYIKFEKTSGDP 310
Query: 209 ERARQIYERFVQCHPKVST-WIKYAKFEMKMGEVDRA-RNVYERA 251
R + IYER V +P S WI Y + K +V +A + Y RA
Sbjct: 311 TRVQAIYERAVAEYPVSSDLWIDYTVYLDKTLKVGKAITHAYSRA 355
Score = 70 (29.7 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 23/93 (24%), Positives = 47/93 (50%)
Query: 231 YAKFEMKMG-EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL 289
+A E+ +G ++ AR V++ ++K A + A+ + E + AR IY+
Sbjct: 458 WANLELNIGKDLAGARGVWDSFLKKSGGMLAA---WHAYIDMEVHLGHIKEARSIYRRCY 514
Query: 290 DHIPKGR-AEDLYRKFVAFEKQYGDREGIEDAI 321
G +ED+ + ++ FE+++GD E + A+
Sbjct: 515 TRKFDGTGSEDICKGWLRFEREHGDLEHFDLAV 547
Score = 40 (19.1 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 312 GDREGIEDAIVGKRRFQYEDEVRKNPMNY 340
G+R+G E + GK F V+ P+ Y
Sbjct: 767 GERKGNEVEVRGKNTFAVPRNVK--PLGY 793
>POMBASE|SPBC4B4.09 [details] [associations]
symbol:usp105 "U1 snRNP-associated protein Usp105"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC;ISO] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0030627 "pre-mRNA 5'-splice site binding" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 PomBase:SPBC4B4.09 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0457 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 PIR:T40481 RefSeq:NP_596426.1
ProteinModelPortal:O74970 EnsemblFungi:SPBC4B4.09.1 GeneID:2540869
KEGG:spo:SPBC4B4.09 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 NextBio:20801985 Uniprot:O74970
Length = 612
Score = 128 (50.1 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 41/192 (21%), Positives = 85/192 (44%)
Query: 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAE-VEMKNKFINHARNVWDRAV 152
W KY +EE + DF R ++ER L W +YA + + +N +++RA
Sbjct: 285 WRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERAS 344
Query: 153 TLLPRVDQ--LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQ----GWLSYIKFELRYN 206
+ + + + +Y EE GN+A A+ I++ + +P GW+ +
Sbjct: 345 CIFASISRPGIRVQYALFEESQGNIASAKAIYQSILTQLPGNLEAVLGWVGLERRNAPNY 404
Query: 207 EVERARQIYERFV---QCHPKVSTWI--KYAKFEMKM-GEVDRARNVYERAVEKLADDEE 260
++ A + + +C+ ++ + + K K+ G+++ ARN++ + L D
Sbjct: 405 DLTNAHAVLRSIINEGKCNTGITEVLITEDIKLVWKIEGDIELARNMFLQNAPALLD--- 461
Query: 261 AEQLFVAFAEFE 272
+++F FE
Sbjct: 462 CRHFWISFLRFE 473
Score = 119 (46.9 bits), Expect = 0.00056, P = 0.00056
Identities = 62/296 (20%), Positives = 124/296 (41%)
Query: 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLW 162
S++ N RSV++R L W KYA+ E + ++++R + +P LW
Sbjct: 50 SKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLW 109
Query: 163 YKYIHME-EMLGNVAGARQIFERWMHWMP----DQQGWLSYIKFELRYNEVERARQIYER 217
Y + E G+ R++F + + + W Y++FE R + Q+ ER
Sbjct: 110 TNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLER 169
Query: 218 FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYER----AVEKLADDEEAEQLFVAFAEFEE 273
+ H + + +Y FE + +V +++ + + + + D E V A ++
Sbjct: 170 LI--HIPLHQYARY--FE-RFVQVSQSQPIQQLLPPDVLASIRADVTREPAKVVSAGSKQ 224
Query: 274 RCKETERARCIYKFALDHIPKGRAEDLYRK-FVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
ER + ++ + R +++ + F + + R E I KR + + E
Sbjct: 225 IT--VERG----ELEIEREMRARIYNIHLQIFQKVQLETAKRWTFESEI--KRPYFHVKE 276
Query: 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWIN 388
+ + + W Y+ EE G+ +R +YER + +E +W RY W++
Sbjct: 277 LDEAQLVN--WRKYLDFEEVEGDFQRICHLYERCLITCALYDE--FWFRYAR-WMS 327
>CGD|CAL0001343 [details] [associations]
symbol:orf19.6356 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 Pfam:PF06424 SMART:SM00386 CGD:CAL0001343
GO:GO:0005634 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0000398
EMBL:AACQ01000192 EMBL:AACQ01000189 KO:K12855 InterPro:IPR027108
PANTHER:PTHR11246:SF1 RefSeq:XP_711574.1 RefSeq:XP_711643.1
ProteinModelPortal:Q59PD7 STRING:Q59PD7 GeneID:3646751
GeneID:3646834 KEGG:cal:CaO19.13713 KEGG:cal:CaO19.6356
Uniprot:Q59PD7
Length = 911
Score = 95 (38.5 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149
N +W++ + +S D + + AL + ++ LWLK ++E N IN R V
Sbjct: 297 NDEIWLENIRLNQS--DIKLCKQLITNALNYNPKSEKLWLKATDLETNN--INK-RKVLM 351
Query: 150 RAVTLLPRVDQLWYKYIHME 169
+ + +P DQLW K I +E
Sbjct: 352 KGLEKIPNNDQLWEKLIELE 371
Score = 82 (33.9 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 336 NPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
NP + I F I+LE GN A E Y + I + P E +++W +YI++
Sbjct: 601 NPTDLSIKFAIIKLELITGNLLNA-EKYIKHIIDTKPMESEKFWYKYIHI 649
>UNIPROTKB|Q59PD7 [details] [associations]
symbol:PRP6 "Putative uncharacterized protein PRP6"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 Pfam:PF06424 SMART:SM00386
CGD:CAL0001343 GO:GO:0005634 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0000398 EMBL:AACQ01000192 EMBL:AACQ01000189 KO:K12855
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_711574.1
RefSeq:XP_711643.1 ProteinModelPortal:Q59PD7 STRING:Q59PD7
GeneID:3646751 GeneID:3646834 KEGG:cal:CaO19.13713
KEGG:cal:CaO19.6356 Uniprot:Q59PD7
Length = 911
Score = 95 (38.5 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149
N +W++ + +S D + + AL + ++ LWLK ++E N IN R V
Sbjct: 297 NDEIWLENIRLNQS--DIKLCKQLITNALNYNPKSEKLWLKATDLETNN--INK-RKVLM 351
Query: 150 RAVTLLPRVDQLWYKYIHME 169
+ + +P DQLW K I +E
Sbjct: 352 KGLEKIPNNDQLWEKLIELE 371
Score = 82 (33.9 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 336 NPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385
NP + I F I+LE GN A E Y + I + P E +++W +YI++
Sbjct: 601 NPTDLSIKFAIIKLELITGNLLNA-EKYIKHIIDTKPMESEKFWYKYIHI 649
>SGD|S000000316 [details] [associations]
symbol:CYC8 "General transcriptional co-repressor"
species:4932 "Saccharomyces cerevisiae" [GO:2001020 "regulation of
response to DNA damage stimulus" evidence=IMP] [GO:0042826 "histone
deacetylase binding" evidence=IDA;IPI] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IPI]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0001191 "RNA polymerase II transcription factor binding
transcription factor activity involved in negative regulation of
transcription" evidence=IDA;IPI] [GO:0001190 "RNA polymerase II
transcription factor binding transcription factor activity involved
in positive regulation of transcription" evidence=IGI;IDA;IPI]
[GO:0061392 "regulation of transcription from RNA polymerase II
promoter in response to osmotic stress" evidence=IMP] [GO:0007070
"negative regulation of transcription from RNA polymerase II
promoter during mitosis" evidence=IMP] [GO:2000531 "regulation of
fatty acid biosynthetic process by regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0035955 "negative
regulation of dipeptide transport by negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0017053 "transcriptional repressor complex" evidence=IDA]
InterPro:IPR001440 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00515 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00028 SGD:S000000316 GO:GO:0017053 EMBL:BK006936
GO:GO:0006338 GO:GO:2001020 eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:X78993 EMBL:X66247 GO:GO:0001190 RefSeq:NP_009670.3
GeneID:852410 KEGG:sce:YBR112C KO:K06665 GO:GO:0016584
GO:GO:0001191 GO:GO:0035955 OrthoDB:EOG4KPXK4 EMBL:M23440
EMBL:M17826 EMBL:Z35981 PIR:S25365 RefSeq:NP_009675.3
ProteinModelPortal:P14922 SMR:P14922 DIP:DIP-696N IntAct:P14922
MINT:MINT-579675 STRING:P14922 PaxDb:P14922 PeptideAtlas:P14922
EnsemblFungi:YBR112C GeneID:852414 KEGG:sce:YBR117C
GeneTree:ENSGT00640000091592 KO:K00615 NextBio:971258
Genevestigator:P14922 GermOnline:YBR112C GO:GO:0007070
GO:GO:2000531 GO:GO:0061392 Uniprot:P14922
Length = 966
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 47/214 (21%), Positives = 94/214 (43%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV-ERARQIYERF 218
+ W + E LG+ A ++ + + P L+ + R ++ +RA ++YER
Sbjct: 47 ETWLSIASLAETLGDGDRAAMAYDATLQFNPSSAKALTSLAHLYRSRDMFQRAAELYERA 106
Query: 219 VQCHPKVS-TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKE 277
+ +P++S W + + ++ RA N Y++A+ L++ +L+ +R
Sbjct: 107 LLVNPELSDVWATLGHCYLMLDDLQRAYNAYQQALYHLSNPN-VPKLWHGIGILYDRYGS 165
Query: 278 TERARCIYKFALDHIPK-GRAEDLYRKFVAFEKQYGD-REGIEDAIVGKRRFQYEDEVRK 335
+ A + L+ P +A ++Y + K G + +E F+Y
Sbjct: 166 LDYAEEAFAKVLELDPHFEKANEIYFRLGIIYKHQGKWSQALEC-------FRYILPQPP 218
Query: 336 NPMN-YDIWFDYIRLEESVGNKERAREVYERAIA 368
P+ +DIWF + ES+G + A+E YE +A
Sbjct: 219 APLQEWDIWFQLGSVLESMGEWQGAKEAYEHVLA 252
>TAIR|locus:2100439 [details] [associations]
symbol:APC8 "anaphase-promoting complex subunit 8"
species:3702 "Arabidopsis thaliana" [GO:0030071 "regulation of
mitotic metaphase/anaphase transition" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0031347 "regulation of defense
response" evidence=IMP] [GO:0007276 "gamete generation"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0032875 "regulation of DNA endoreduplication"
evidence=RCA] [GO:0042023 "DNA endoreduplication" evidence=RCA]
[GO:0042991 "transcription factor import into nucleus"
evidence=RCA] [GO:0051302 "regulation of cell division"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] InterPro:IPR001440 InterPro:IPR007192
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF00515 Pfam:PF04049 Pfam:PF13176 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00028 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0051301 GO:GO:0007067 GO:GO:0030071
GO:GO:0016567 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0005680
HOGENOM:HOG000115852 KO:K03355 EMBL:AL096856 EMBL:AY056217
EMBL:AY057562 EMBL:AY099779 EMBL:BT000289 EMBL:AK220695
IPI:IPI00527414 PIR:T13004 RefSeq:NP_190398.1 UniGene:At.26312
HSSP:P50542 ProteinModelPortal:Q9STS3 SMR:Q9STS3 IntAct:Q9STS3
STRING:Q9STS3 PaxDb:Q9STS3 PRIDE:Q9STS3 EnsemblPlants:AT3G48150.1
GeneID:823970 KEGG:ath:AT3G48150 TAIR:At3g48150 InParanoid:Q9STS3
OMA:CIIANYY PhylomeDB:Q9STS3 ProtClustDB:CLSN2684028
Genevestigator:Q9STS3 GO:GO:0031347 Uniprot:Q9STS3
Length = 579
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 56/207 (27%), Positives = 96/207 (46%)
Query: 109 RARSVWERALEVDYRNHTLW--LKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166
+A + RAL+++ + + W + + VEMKN A + + RAV + P + WY
Sbjct: 357 KAVMYFRRALKLNKKYLSAWTLMGHEYVEMKNT--PAAIDAYRRAVDINPTDYRAWYGLG 414
Query: 167 HMEEMLGNVAGARQIFERWMHWMP-DQQGWLSYIKF---ELRYNEVERARQIYERFVQCH 222
EM+G A F + + ++P D + W++ K E Y +E A + Y+R V C
Sbjct: 415 QAYEMMGMPFYALHYFRKSIFFLPNDSRLWIAMAKCYQTEQLYM-LEEAIKCYKRAVNCT 473
Query: 223 PKVSTWI-KYAKFEMKMGEVDRARNVYERAVEKL-ADDEEAEQLFVAF---AEFEERCKE 277
+ + AK K+G + A +E+ +E++ A+ E +F A A + K+
Sbjct: 474 DTEGIALNQLAKLHQKLGRNEEAAYYFEKDLERMDAEGLEGPNMFEALVFLATHFKNHKK 533
Query: 278 TERARCIYKFALDHI-P-KGRAEDLYR 302
E A LD+ P K +A+ L R
Sbjct: 534 FEEAEVYCTRLLDYSGPEKEKAKSLLR 560
>DICTYBASE|DDB_G0283719 [details] [associations]
symbol:DDB_G0283719 "DUF1740 family protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003107
SMART:SM00386 dictyBase:DDB_G0283719 EMBL:AAFI02000056
GO:GO:0005622 GO:GO:0006396 InterPro:IPR013633 Pfam:PF08424
RefSeq:XP_638983.1 EnsemblProtists:DDB0238413 GeneID:8624229
KEGG:ddi:DDB_G0283719 eggNOG:NOG315726 OMA:AKSIYYR Uniprot:Q54QP0
Length = 1320
Score = 90 (36.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 195 WLSYIKFEL-RYNEVERARQIYERFVQCHPK--VSTWIKYAKFEMKMGEVDRARNVYERA 251
WL IKFE R +R + ++E+ + K + W Y +FE+ G + A+++Y R+
Sbjct: 1209 WLFAIKFESNRIGAAQRIKSLFEKAISTTQKHNIIFWKLYIEFEINRGRLKIAKSIYYRS 1268
Query: 252 VEKL 255
+++L
Sbjct: 1269 IKQL 1272
Score = 87 (35.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 65 DSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNR-----ARSVWERALE 119
D+ L L+K E L+ + N WI K++E+ + F+R S++E+ L
Sbjct: 342 DNETLERKTLKKNSELNKLVEQYPNNIEYWIDLVKFQENFQQFSRNVNKSKTSMYEKQLS 401
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166
+ YRN L +E+ + +++ A +WD+ L LW K +
Sbjct: 402 I-YRNSLLHNPDSEI-LTIEYLKLASKLWDQQKVL-----DLWNKVL 441
>CGD|CAL0000714 [details] [associations]
symbol:orf19.2330 species:5476 "Candida albicans" [GO:0034388
"Pwp2p-containing subcomplex of 90S preribosome" evidence=IEA]
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0030515
"snoRNA binding" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714 GO:GO:0071216
GO:GO:0036180 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114 EMBL:AACQ01000113
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640
RefSeq:XP_713935.1 RefSeq:XP_713993.1 ProteinModelPortal:Q59WH2
STRING:Q59WH2 GeneID:3644384 GeneID:3644449 KEGG:cal:CaO19.2330
KEGG:cal:CaO19.9866 Uniprot:Q59WH2
Length = 431
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 45/174 (25%), Positives = 79/174 (45%)
Query: 79 EFE---DLIRRVRWNTGVWIKYAKWEESQKDF---NRARSVWERALEVDYRNHT-LWLKY 131
EFE + +R+ R+N + + + S D+ R +++RA Y T LW +Y
Sbjct: 59 EFETNLEKLRKKRYNRLSKVGMIETKPSISDWAGTRRIMFIFDRATR-RYPGETELWSQY 117
Query: 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME-EMLGNVAGARQIFERWMHWMP 190
+ N I V+ R + L PR W E E GN GAR +F+R +
Sbjct: 118 LKFAKSNGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETNGNAKGARVLFQRGLRLNS 177
Query: 191 DQ-QGWLSYIKFELRY-NEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVD 242
+ + WL+Y +FEL Y +++ R++ + + + + AK E ++ + D
Sbjct: 178 ESLELWLNYAQFELTYISKLLARRKVLGLITEKQQREAMETEEAKLEQEIKKSD 231
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 32/137 (23%), Positives = 67/137 (48%)
Query: 147 VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQ-QGWLSYIKFELRY 205
++DRA P +LW +Y+ + G + +++ R + P WLS K+E
Sbjct: 99 IFDRATRRYPGETELWSQYLKFAKSNGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFET 158
Query: 206 N-EVERARQIYERFVQCHPK-VSTWIKYAKFEMK-MGEVDRARNVYERAVEKLADDEEAE 262
N + AR +++R ++ + + + W+ YA+FE+ + ++ R V EK ++ E
Sbjct: 159 NGNAKGARVLFQRGLRLNSESLELWLNYAQFELTYISKLLARRKVLGLITEK----QQRE 214
Query: 263 QLFVAFAEFEERCKETE 279
+ A+ E+ K+++
Sbjct: 215 AMETEEAKLEQEIKKSD 231
>UNIPROTKB|Q59WH2 [details] [associations]
symbol:UTP6 "Potential U3 snoRNP protein Utp6p"
species:237561 "Candida albicans SC5314" [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714
GO:GO:0071216 GO:GO:0036180 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114
EMBL:AACQ01000113 eggNOG:COG5191 KO:K14557 InterPro:IPR013949
Pfam:PF08640 RefSeq:XP_713935.1 RefSeq:XP_713993.1
ProteinModelPortal:Q59WH2 STRING:Q59WH2 GeneID:3644384
GeneID:3644449 KEGG:cal:CaO19.2330 KEGG:cal:CaO19.9866
Uniprot:Q59WH2
Length = 431
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 45/174 (25%), Positives = 79/174 (45%)
Query: 79 EFE---DLIRRVRWNTGVWIKYAKWEESQKDF---NRARSVWERALEVDYRNHT-LWLKY 131
EFE + +R+ R+N + + + S D+ R +++RA Y T LW +Y
Sbjct: 59 EFETNLEKLRKKRYNRLSKVGMIETKPSISDWAGTRRIMFIFDRATR-RYPGETELWSQY 117
Query: 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME-EMLGNVAGARQIFERWMHWMP 190
+ N I V+ R + L PR W E E GN GAR +F+R +
Sbjct: 118 LKFAKSNGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETNGNAKGARVLFQRGLRLNS 177
Query: 191 DQ-QGWLSYIKFELRY-NEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVD 242
+ + WL+Y +FEL Y +++ R++ + + + + AK E ++ + D
Sbjct: 178 ESLELWLNYAQFELTYISKLLARRKVLGLITEKQQREAMETEEAKLEQEIKKSD 231
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 32/137 (23%), Positives = 67/137 (48%)
Query: 147 VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQ-QGWLSYIKFELRY 205
++DRA P +LW +Y+ + G + +++ R + P WLS K+E
Sbjct: 99 IFDRATRRYPGETELWSQYLKFAKSNGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFET 158
Query: 206 N-EVERARQIYERFVQCHPK-VSTWIKYAKFEMK-MGEVDRARNVYERAVEKLADDEEAE 262
N + AR +++R ++ + + + W+ YA+FE+ + ++ R V EK ++ E
Sbjct: 159 NGNAKGARVLFQRGLRLNSESLELWLNYAQFELTYISKLLARRKVLGLITEK----QQRE 214
Query: 263 QLFVAFAEFEERCKETE 279
+ A+ E+ K+++
Sbjct: 215 AMETEEAKLEQEIKKSD 231
>WB|WBGene00002850 [details] [associations]
symbol:let-716 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0040010 GO:GO:0008406 GO:GO:0002119
GO:GO:0003723 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007276
InterPro:IPR022967 SMART:SM00316 EMBL:FO080367 eggNOG:COG0539
KO:K14792 GeneTree:ENSGT00390000012228 PIR:E88481
RefSeq:NP_498398.1 ProteinModelPortal:Q18038 SMR:Q18038
STRING:Q18038 PaxDb:Q18038 EnsemblMetazoa:C16A3.3 GeneID:175906
KEGG:cel:CELE_C16A3.3 CTD:175906 WormBase:C16A3.3
HOGENOM:HOG000018736 InParanoid:Q18038 OMA:NMEVAYG NextBio:890242
Uniprot:Q18038
Length = 1743
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 46/189 (24%), Positives = 83/189 (43%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+W Y E + D + V+ERA + + +T+ +++ K + A + ++ V
Sbjct: 1527 IWTAYLNMEVAYGDAATVQKVFERACK-NANAYTVHKTLSKIYQKFEKNAEATQILEQMV 1585
Query: 153 TLLPRVDQLWYKYIHMEEML--GNVAGARQIFERWMHWMPDQQGWLSYI-KF---ELRYN 206
R +QL + E ++ + AR++ R + P Q + I KF E ++
Sbjct: 1586 KKF-RANQLEVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLISKFAQLEFKHG 1644
Query: 207 EVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF 265
+ ER R + E V HPK W+ YA+ +K ++ AR V ERA + L+
Sbjct: 1645 DAERGRTLLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERACNLGFSIHKMRPLY 1704
Query: 266 VAFAEFEER 274
+ E E +
Sbjct: 1705 KKWLEMESK 1713
>ZFIN|ZDB-GENE-040426-1997 [details] [associations]
symbol:cstf3 "cleavage stimulation factor, 3'
pre-RNA, subunit 3" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
ZFIN:ZDB-GENE-040426-1997 GO:GO:0005634 GO:GO:0006397
Gene3D:1.25.40.10 CTD:1479 HOGENOM:HOG000231786 HOVERGEN:HBG053813
KO:K14408 EMBL:BC045871 IPI:IPI00497601 RefSeq:NP_998218.2
UniGene:Dr.104620 ProteinModelPortal:Q7ZVG5 SMR:Q7ZVG5
STRING:Q7ZVG5 PRIDE:Q7ZVG5 GeneID:406326 KEGG:dre:406326
InParanoid:Q7ZVG5 NextBio:20817950 ArrayExpress:Q7ZVG5 Bgee:Q7ZVG5
Uniprot:Q7ZVG5
Length = 716
Score = 122 (48.0 bits), Expect = 0.00032, P = 0.00032
Identities = 48/230 (20%), Positives = 103/230 (44%)
Query: 113 VWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHMEEM 171
+W A + ++ L + ++ F + A N+++RA+ TLL + L++ + EE
Sbjct: 293 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIGTLLKKNMLLYFSFADYEES 352
Query: 172 LGNVAGARQIFERWM--HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS--T 227
I+ R + + ++ Y+KF R ++ R I+++ + P+
Sbjct: 353 RMKHEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRSIFKKARE-DPRTRHHV 411
Query: 228 WIKYAKFEMKMGEVDR--ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY 285
++ A E + D+ A ++E ++K D E +A+ ++ E R ++
Sbjct: 412 YVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPE---YILAYIDYLSHLNEDNNTRVLF 467
Query: 286 KFALDH--IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ-YEDE 332
+ L + ++ +++ +F+AFE GD I V +RRF ++DE
Sbjct: 468 ERVLTSGSLSPEKSGEIWARFLAFESNIGDLASILK--VERRRFMAFKDE 515
>CGD|CAL0001111 [details] [associations]
symbol:PRP42 species:5476 "Candida albicans" [GO:0003723 "RNA
binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0005685 "U1 snRNP"
evidence=IEA;ISO] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] InterPro:IPR003107 SMART:SM00386 CGD:CAL0001111
GO:GO:0003723 eggNOG:COG0457 GO:GO:0000398 EMBL:AACQ01000091
EMBL:AACQ01000090 GO:GO:0005685 RefSeq:XP_715099.1
RefSeq:XP_715150.1 ProteinModelPortal:Q5A014 GeneID:3643177
GeneID:3643241 KEGG:cal:CaO19.11852 KEGG:cal:CaO19.4374
Uniprot:Q5A014
Length = 393
Score = 82 (33.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 34/127 (26%), Positives = 56/127 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119
KQ + STEL + + ++ LI WN I + EE + N R+ + LE
Sbjct: 6 KQWSSISTELVQDP-QNFELWQSLIEAAEWNEKRGINKSTSEE---ELNVLRTSYNSFLE 61
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHME--EMLGNVA 176
W++YAE E K + A ++ R + T L +LW Y++ + + N++
Sbjct: 62 KFPFQFKYWIRYAEWEFKLGNTSTAEQIYLRGLNTQLSHCIELWISYLNFKINTINDNIS 121
Query: 177 GARQIFE 183
Q FE
Sbjct: 122 EILQKFE 128
Score = 80 (33.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 195 WLSYIKF-ELRYNEVERARQIYERFV-QCHPKVSTWIKYAKFEMKMGEVDRARNVYERAV 252
W+SYI + E++ ++ +Y RF+ TW K+A + + + ++AR + V
Sbjct: 277 WMSYIDYLEIKQYPIKFIELVYYRFLYNARNYPQTWSKFADYYIYHAKFNKARKILTDGV 336
Query: 253 EKLADDEEAEQLFVAFAEFEERCKETERA 281
K DD + L + + E K +RA
Sbjct: 337 -KYVDDYK---LLIKLVDLEIFLKNYQRA 361
>UNIPROTKB|Q5A014 [details] [associations]
symbol:PRP42 "Potential spliceosomal U1 snRNP protein"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005685 "U1 snRNP" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 CGD:CAL0001111 GO:GO:0003723
eggNOG:COG0457 GO:GO:0000398 EMBL:AACQ01000091 EMBL:AACQ01000090
GO:GO:0005685 RefSeq:XP_715099.1 RefSeq:XP_715150.1
ProteinModelPortal:Q5A014 GeneID:3643177 GeneID:3643241
KEGG:cal:CaO19.11852 KEGG:cal:CaO19.4374 Uniprot:Q5A014
Length = 393
Score = 82 (33.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 34/127 (26%), Positives = 56/127 (44%)
Query: 60 KQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119
KQ + STEL + + ++ LI WN I + EE + N R+ + LE
Sbjct: 6 KQWSSISTELVQDP-QNFELWQSLIEAAEWNEKRGINKSTSEE---ELNVLRTSYNSFLE 61
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHME--EMLGNVA 176
W++YAE E K + A ++ R + T L +LW Y++ + + N++
Sbjct: 62 KFPFQFKYWIRYAEWEFKLGNTSTAEQIYLRGLNTQLSHCIELWISYLNFKINTINDNIS 121
Query: 177 GARQIFE 183
Q FE
Sbjct: 122 EILQKFE 128
Score = 80 (33.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 195 WLSYIKF-ELRYNEVERARQIYERFV-QCHPKVSTWIKYAKFEMKMGEVDRARNVYERAV 252
W+SYI + E++ ++ +Y RF+ TW K+A + + + ++AR + V
Sbjct: 277 WMSYIDYLEIKQYPIKFIELVYYRFLYNARNYPQTWSKFADYYIYHAKFNKARKILTDGV 336
Query: 253 EKLADDEEAEQLFVAFAEFEERCKETERA 281
K DD + L + + E K +RA
Sbjct: 337 -KYVDDYK---LLIKLVDLEIFLKNYQRA 361
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 122 (48.0 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 49/217 (22%), Positives = 98/217 (45%)
Query: 183 ERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEM----KM 238
E W+ W+ D+ IK +E E+ +++ER V+ + W++YA++ + +
Sbjct: 21 EIWLDWLKDE------IKMASEVSEREKVYELFERAVKDYICPEIWLEYAQYSIGGIGQE 74
Query: 239 GEVDRARNVYERAVEKLA-DDEEAEQLFVAFAEFEERCKET---ERARCIYKFALDHIPK 294
G +++ R+++ERA+ + + L+ A+ EFE ET ER +++ L IP
Sbjct: 75 GGIEKVRSIFERALTAVGLHVTKGTALWEAYREFENAILETAQLERIHTLFRRQLG-IPL 133
Query: 295 GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ----YEDEVRKNPMNYDI-----WFD 345
E Y ++ + + I++ ++ + YE+ + + + +
Sbjct: 134 LDMEASYAEYEEWSEDPIPETTIKNYKKALQQLEKCKPYEEALVPLKLGAETPKLAEYQA 193
Query: 346 YIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382
YI E G+ R + +YERA+A + W RY
Sbjct: 194 YIDFEMKAGDPARIQLIYERALAENCLVPD--LWARY 228
Score = 43 (20.2 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 380 QRYIYLWINYALYEELDAGDMERTR 404
Q + LWI Y L E GD + R
Sbjct: 396 QLVVGLWIQYLLAMERAHGDTQHCR 420
>UNIPROTKB|F1RJ62 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 KO:K14557 InterPro:IPR013949
Pfam:PF08640 CTD:55813 OMA:EKEQESC GeneTree:ENSGT00390000016493
EMBL:FP089481 RefSeq:XP_003131794.1 UniGene:Ssc.6804
Ensembl:ENSSSCT00000019313 GeneID:100524172 KEGG:ssc:100524172
Uniprot:F1RJ62
Length = 598
Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00070
Identities = 60/278 (21%), Positives = 116/278 (41%)
Query: 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179
+ R + + + E++N ++ + V+ RA QLW Y+ + A
Sbjct: 68 IQRRRARIGYSFKKDEIENSIVHRVQGVFRRASAKWKDDVQLWLSYVVFCKKWATKAQLS 127
Query: 180 QIFERWMHWMPDQQG-WLSYIKFELRYN-EVERARQIYERFVQCHPKV-STWIKYAKFEM 236
++F + ++ W+ K+E+ E ARQ++ R ++ HP+ + +Y F M
Sbjct: 128 KVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYQEY--FRM 185
Query: 237 KMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR 296
++ ++ R EK + E ++ V E+ E + E AR IYK ++ I KG
Sbjct: 186 ELMHAEKLRK------EK--QEFETAKMDVENLEYSEEILKGELARIIYKNSVSII-KGA 236
Query: 297 AEDLYRKFVA----FEKQ-----YGDREGI--EDAIVGKRRFQYEDEVRKNPMNYDIWFD 345
+ +A F K Y D + + +D + + E E+ P +
Sbjct: 237 EFHVSLLSIAQLFDFAKDLQREIYDDLQALHTDDPLTWDYVARRELEMESQPGDEPPTTK 296
Query: 346 YIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383
++ E+ +ER VYE A+ +P + W+ Y+
Sbjct: 297 QAKVAEATRREERCCAVYEEAVKTLPT---EAMWKCYL 331
Score = 94 (38.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 36/152 (23%), Positives = 73/152 (48%)
Query: 107 FNRA--RSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYK 164
F+RA +++ ++A +++Y+ L K FIN+ + + + R ++ Y
Sbjct: 25 FSRAEIKAIIKKASDLEYKIQRRTL------FKEDFINYVQYEINLLELIQRRRARIGYS 78
Query: 165 YIHMEEMLGNVAGARQ-IFERWM-HWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCH 222
+ +E+ ++ Q +F R W D Q WLSY+ F ++ + +++ + H
Sbjct: 79 F-KKDEIENSIVHRVQGVFRRASAKWKDDVQLWLSYVVFCKKWATKAQLSKVFSAMLAIH 137
Query: 223 P-KVSTWIKYAKFEMKMG-EVDRARNVYERAV 252
K + WI AK+EM+ + AR ++ RA+
Sbjct: 138 SNKPALWIMAAKWEMEDRLSSESARQLFLRAL 169
Score = 70 (29.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 41/165 (24%), Positives = 72/165 (43%)
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306
V+E A +L + L++++AE+ E K E I+K A+ + + L K++
Sbjct: 425 VFEEAFVRLKP-QICLPLWISWAEWSEGAKSQEDTEAIFKKAVLAVMGADSVTLKDKYLD 483
Query: 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERA--REVYE 364
+ + G + A + F+ E R P + D + I+ E+ + + A RE YE
Sbjct: 484 WAYR---SSGYKKA---RAVFKSLQESR--PFSVDFFRKMIQFEKEQESCKMANLREYYE 535
Query: 365 RAIANVPPAEEKRYWQRYIYLWINYALYEELD--AGDMERTRDVY 407
RA+ + LW++Y + EELD G E +Y
Sbjct: 536 RALREFGSVDSD--------LWMDY-IKEELDHPLGRPENCGQIY 571
>MGI|MGI:2670969 [details] [associations]
symbol:Nrde2 "nrde-2 necessary for RNA interference, domain
containing" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR011990 MGI:MGI:2670969 Gene3D:1.25.40.10
GeneTree:ENSGT00390000005524 InterPro:IPR013633 Pfam:PF08424
eggNOG:NOG315726 HOGENOM:HOG000069945 HOVERGEN:HBG051018
OMA:VRENPRD OrthoDB:EOG4933H2 EMBL:BY182441 EMBL:AC166349
EMBL:BC002230 EMBL:BC025577 EMBL:BC051175 IPI:IPI00330709
UniGene:Mm.224076 ProteinModelPortal:Q80XC6 PhosphoSite:Q80XC6
PaxDb:Q80XC6 PRIDE:Q80XC6 Ensembl:ENSMUST00000021596
UCSC:uc007oso.1 InParanoid:Q80XC6 Bgee:Q80XC6 CleanEx:MM_BC002230
Genevestigator:Q80XC6 GermOnline:ENSMUSG00000021179 Uniprot:Q80XC6
Length = 1172
Score = 84 (34.6 bits), Expect = 0.00057, Sum P(4) = 0.00057
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 297 AEDLYRKFVAFEKQYGDRE---GI-EDAIVGKRRFQYEDEVRKNPMNYD--IWFDYIRLE 350
AE L +K V ++ G RE I E + + R +E+ +R + N +W Y+
Sbjct: 1048 AEKLRKKLVESVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGNQCPLLWRMYLNFL 1107
Query: 351 ESVGNKERAREVYERAIANVPPAE 374
S+GNKER++ V+ +A+ + P A+
Sbjct: 1108 VSLGNKERSKGVFYKALQSCPWAK 1131
Score = 69 (29.3 bits), Expect = 0.00057, Sum P(4) = 0.00057
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 161 LWYKYIHMEEMLGNVAGARQIFE 183
LW +Y H+E +LGN AR++F+
Sbjct: 790 LWKQYAHLEWLLGNTEDARKVFD 812
Score = 52 (23.4 bits), Expect = 0.00057, Sum P(4) = 0.00057
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 112 SVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR--NVWDRAVTLLPRVDQLWYKYI 166
+V ERA+E + ++ LK A++++ ++F + W + + L P LW +Y+
Sbjct: 377 AVLERAIESN--PGSVELKLAKLQLCSEFWEPSALAKEWQKLLFLHPNNTSLWQRYL 431
Score = 46 (21.3 bits), Expect = 0.00057, Sum P(4) = 0.00057
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 74 LRKR-KEFEDLIRRVRWNTGVWIKYAKWEE 102
L+ R +EF +R W+T +W+ + +++
Sbjct: 316 LKARVEEFNRRVRENPWDTQLWMAFVAFQD 345
>SGD|S000000259 [details] [associations]
symbol:PRP6 "Splicing factor" species:4932 "Saccharomyces
cerevisiae" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 SGD:S000000259
EMBL:BK006936 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0000398
GO:GO:0046540 EMBL:Z46260 KO:K12855 OrthoDB:EOG4D82F8
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:X53465 EMBL:Z35924 PIR:S12319
RefSeq:NP_009611.1 ProteinModelPortal:P19735 SMR:P19735
DIP:DIP-1290N IntAct:P19735 MINT:MINT-392841 STRING:P19735
PaxDb:P19735 PeptideAtlas:P19735 EnsemblFungi:YBR055C GeneID:852344
KEGG:sce:YBR055C CYGD:YBR055c HOGENOM:HOG000246836 OMA:PQGWIAS
NextBio:971082 Genevestigator:P19735 GermOnline:YBR055C
Uniprot:P19735
Length = 899
Score = 120 (47.3 bits), Expect = 0.00071, P = 0.00071
Identities = 59/264 (22%), Positives = 110/264 (41%)
Query: 68 ELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRA--RSVWERALEVDYRNH 125
EL D+ + ED ++ ++ KY + Q D N + + ER L+ H
Sbjct: 612 ELRDFFQQTFSSLEDF--KISGTERLYYKYVNFLRYQ-DLNEEAIKFLNERCLKSFPICH 668
Query: 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM-LGNVAGARQIFER 184
+L+ ++ I +R + L+P LW ++E+ L N AR I +R
Sbjct: 669 KFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIDEIDLKNPVRARSILDR 728
Query: 185 WMHWMPDQQ-GWLSYIKFELRYNEVERARQIYERFVQCHPKVST-WIKYAKFEMKMGEVD 242
+ PD +++ I+ E+R +++A + + +Q P + W++ K +
Sbjct: 729 GLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSS 788
Query: 243 RARNVYERAVEKLADDE----EAEQLFVAFAEFEERCKETERA--RC-------IYKFAL 289
+ +++ A+ + +D E F A A++E K ERA +C ++ F
Sbjct: 789 LKKTIFQDALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYGDTWVWLFRT 848
Query: 290 DHIPKGR-AEDLYRKFVAFEKQYG 312
+ G+ DLY F E YG
Sbjct: 849 -YARLGKDTVDLYNMFDQCEPTYG 871
Score = 98 (39.6 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 31/156 (19%), Positives = 68/156 (43%)
Query: 69 LADYRLRKRKEFEDLIRRVR----WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN 124
L+D L ++ +++ R N WI A+ EE + F+ A+ + E + R+
Sbjct: 215 LSDATLEDLQKMRTILKSYRKADPTNPQGWIASARLEEKARKFSVAKKIIENGCQECPRS 274
Query: 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER 184
+WL+ + + +++ + + A+ P LW+K I +E N ++ +
Sbjct: 275 SDIWLE--NIRLHESDVHYCKTLVATAINFNPTSPLLWFKAIDLESTTVN---KYRVVRK 329
Query: 185 WMHWMPDQQG-WLSYIKFELRYNEVERARQIYERFV 219
+ +P +G W + FE +V + + +F+
Sbjct: 330 ALQEIPRDEGLWKLAVSFEADKAQVIKMLEKATQFI 365
Score = 69 (29.3 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKE 357
E LY K+V F + Y D E+AI +F E ++ P+ + + ++ S+GN E
Sbjct: 633 ERLYYKYVNFLR-YQDLN--EEAI----KFLNERCLKSFPICHKFFLQLGQIYHSMGNIE 685
Query: 358 RAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406
+RE Y VP LW++ + +E+D + R R +
Sbjct: 686 MSRETYLSGTRLVPNCP---------LLWVSLSKIDEIDLKNPVRARSI 725
>DICTYBASE|DDB_G0283307 [details] [associations]
symbol:prpf39 "pre-mRNA processing factor 39"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
dictyBase:DDB_G0283307 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:AAFI02000052 KO:K13217
eggNOG:NOG298273 RefSeq:XP_639156.1 ProteinModelPortal:Q54R91
EnsemblProtists:DDB0233547 GeneID:8624026 KEGG:ddi:DDB_G0283307
InParanoid:Q54R91 OMA:ADHEYAH Uniprot:Q54R91
Length = 699
Score = 118 (46.6 bits), Expect = 0.00086, P = 0.00086
Identities = 63/301 (20%), Positives = 118/301 (39%)
Query: 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLW 162
S ++ + +W + ++ + W V K I R V+ + P W
Sbjct: 17 SPQNLSEEDKLW-KIVQTNPLAFNQWTFLIGVIEKTNDIEKIRKVYSEFLNEFPLCFLYW 75
Query: 163 YKYIHMEEMLGNVAGARQIFERWMHWMPDQQG-WLSYIKFEL-RYNEVERARQIYERFVQ 220
++ E N + +IFE+ + +P WL+Y + + V+ R +++R +
Sbjct: 76 KRFADHEYAHNNTTQSIEIFEKAVSSIPHSVDIWLNYCTHLIDKSYPVDEIRSVFKRGIN 135
Query: 221 C----HPKVSTWIKYAKFEMKMGEVDRA---RNVYERAVEKLADDEEAEQLFVAFAEFEE 273
+ W KY +FEM + A ++ + +E L E + + + +
Sbjct: 136 IIGTDYQSGKFWEKYIEFEMGQENNELASIFNSILKTPLENLQIFNEKFKDNIDRIKIND 195
Query: 274 RCKETERARCI-YKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332
E ER Y + E Y + EK R E +IV KR F +
Sbjct: 196 MLTEEERKEYTGYDAETKQMVLQNREKWYHE--TLEK-ISKRSNFE-SIVNKRFFFHIQP 251
Query: 333 VRKNPMNYDIW---FDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI-YLWIN 388
+ + M +W F+Y+ + SV +E +++ER + VP +W +YI +L +
Sbjct: 252 I--DEMTLSVWRSYFNYMESDPSV-TQEEVIKLFERCL--VPCCYYSEFWLKYIKFLQES 306
Query: 389 Y 389
Y
Sbjct: 307 Y 307
>UNIPROTKB|F8VV04 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00386 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396 EMBL:AC008119
HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206 IPI:IPI01022491
ProteinModelPortal:F8VV04 SMR:F8VV04 Ensembl:ENST00000546815
UCSC:uc010swy.1 ArrayExpress:F8VV04 Bgee:F8VV04 Uniprot:F8VV04
Length = 771
Score = 118 (46.6 bits), Expect = 0.00098, P = 0.00098
Identities = 69/343 (20%), Positives = 148/343 (43%)
Query: 93 VWIKYAKWEES---QKD-FNRARSVWERALEVDYRNHT----LWLKYAEVEMKNKFINHA 144
+W++Y ++ QK + RSV+ERAL + T LW Y E E + + A
Sbjct: 185 IWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFE--SAIVEAA 242
Query: 145 RNV------WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSY 198
R V +DR T +++++ + ++ + F + W D
Sbjct: 243 RPVAGFLSPFDREQTFDSQLEKV--HSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVI 300
Query: 199 IKFELRYNEVERARQIYERFVQCH-PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257
+ ++E+ + E +Q P+++ + Y FEMK+G+ R + ++ERA L +
Sbjct: 301 QNYNKALQQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERA---LVE 357
Query: 258 DEEAEQLFVAFAEFEER-CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DRE 315
+ L++ ++++ +R K + ++ A+ + P A L+ +++ +++G D +
Sbjct: 358 NCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVA--LWSRYLLAMERHGVDHQ 415
Query: 316 GIE---DAIVGKRRFQYEDEVRKNPMNYDIWFDYIRL-----EESVGNKERAREVYERAI 367
I + + Q D V + + DY+R ++S E R + RA+
Sbjct: 416 VISVTFEKALNAGFIQATDYVEI----WQAYLDYLRRRVDFKQDSSKELEELRAAFTRAL 471
Query: 368 ANVPPAEEKRYWQR---YIYLWINYALYEELDAGDMERTRDVY 407
+ E+R+ + + N+A E +M++ R+++
Sbjct: 472 EYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNMQKARELW 514
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 119 (46.9 bits), Expect = 0.00099, P = 0.00099
Identities = 73/338 (21%), Positives = 150/338 (44%)
Query: 93 VWIKYAKWEES---QKD-FNRARSVWERALEVDYRNHT----LWLKYAEVEMKNKFINHA 144
+W++Y ++ QK + RSV+ERAL + T +W Y E E + + A
Sbjct: 184 IWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLAIWEAYREFE--SAIVEAA 241
Query: 145 RNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELR 204
R +R +L R QL ME +E W P + L ++
Sbjct: 242 R--LERVHSLFRR--QLAIPLYEMEATFAE-------YEEWSE-EPIPESVLQ--SYQKA 287
Query: 205 YNEVERARQIYERFVQCH-PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQ 263
++E+ + E +Q P+++ + Y FEMK+G+ R + ++ERA L ++
Sbjct: 288 LGQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKVGDPARIQLIFERA---LVENCLVPD 344
Query: 264 LFVAFAEFEER-CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG-DREGI---- 317
L++ ++++ +R K + ++ A+ + P A L+ +++ +++G D + I
Sbjct: 345 LWIRYSQYLDRQLKVKDLVLSVHSRAVRNCPWTVA--LWSRYLLAMERHGLDHQMISATF 402
Query: 318 EDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRL-----EESVGNKERAREVYERAIANVPP 372
E+A+ Q D V + ++ DY+R ++S E R ++ RA+ +
Sbjct: 403 ENAL-SAGFIQATDYVEI----WQVYLDYLRRRVDFRQDSSKELEELRSMFTRALEYLQQ 457
Query: 373 AEEKRYWQR---YIYLWINYALYEELDAGDMERTRDVY 407
E+R+ + + ++A E +M++ R+++
Sbjct: 458 EVEERFSESGDPSCLIMQSWARVEARLCNNMQKARELW 495
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 408 391 0.00094 117 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 119
No. of states in DFA: 630 (67 KB)
Total size of DFA: 299 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.56u 0.14s 33.70t Elapsed: 00:00:01
Total cpu time: 33.63u 0.14s 33.77t Elapsed: 00:00:01
Start: Tue May 21 07:03:37 2013 End: Tue May 21 07:03:38 2013
WARNINGS ISSUED: 1