BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015351
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 34/264 (12%)
Query: 93 VWIKYAKWEESQK--------DFNRARSVWERALEVDYRNHTLWLKYAEV---------- 134
+W KY +WE+S R +E+ L V + +W + A+
Sbjct: 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291
Query: 135 --EMKNK--FINHARNVWDRAV-TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW- 188
+M N F + A N+++RA+ TLL + L++ Y EE I+ R +
Sbjct: 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351
Query: 189 -MPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTWIKYAKFEMKMG-EVDRAR 245
+ ++ Y+KF R ++ R I+++ + + ++ A E + A
Sbjct: 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 411
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL--DHIPKGRAEDLYRK 303
++E ++K D E +A+ ++ E R +++ L +P ++ +++ +
Sbjct: 412 KIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468
Query: 304 FVAFEKQYGDREGIEDAIVGKRRF 327
F+AFE GD I V KRRF
Sbjct: 469 FLAFESNIGDLASILK--VEKRRF 490
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 124/322 (38%), Gaps = 73/322 (22%)
Query: 135 EMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG 194
E +N+ I+ AR ++R V P + W YI E N ++F+R + +
Sbjct: 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL 81
Query: 195 WLSYIKFELRYNEVERARQIY-ERFVQCHP-----------KVSTWIKYAKFEMKMGEVD 242
W Y+ + E + Y E+ Q + W+ Y F + V
Sbjct: 82 WKCYLSY---VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG 138
Query: 243 R---------ARNVYERA-------VEKLADD----EEAEQLFVAFAEFEERCKETERAR 282
R VY+R +E+L D EE + +A E+R ++ AR
Sbjct: 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198
Query: 283 CIYK------FALD----HIP------KGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRR 326
+ K LD +P + + D+++K++ +EK R + I +
Sbjct: 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258
Query: 327 FQYEDEVRKNPMNYDIWFDYIR-LEESV------GNKERAR-------EVYERAIANVPP 372
F YE + + DIW++ + LE+S G+ A+ +YERAI+ +
Sbjct: 259 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-- 316
Query: 373 AEEKRYWQRYIYLWINYALYEE 394
++ + L+ YA YEE
Sbjct: 317 ------LKKNMLLYFAYADYEE 332
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
Length = 308
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 94 WIKYAKWEESQK--------DFNRARSVWERALEVDYRNHTLWLKYAE-VEMKNK----- 139
W KY +WE+S R +E+ L V + +W + A+ +E +K
Sbjct: 11 WKKYIQWEKSNPLRTEDQTLITKRVXFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70
Query: 140 --------FINHARNVWDRAV-TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW-- 188
F + A N+++RA+ TLL + L++ Y EE I+ R +
Sbjct: 71 GDXNNAKLFSDEAANIYERAISTLLKKNXLLYFAYADYEESRXKYEKVHSIYNRLLAIED 130
Query: 189 MPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTWIKYAKFEMKMG-EVDRARN 246
+ ++ Y KF R ++ R I+++ + + ++ A E + A
Sbjct: 131 IDPTLVYIQYXKFARRAEGIKSGRXIFKKAREDARTRHHVYVTAALXEYYCSKDKSVAFK 190
Query: 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL--DHIPKGRAEDLYRKF 304
++E ++K D E +A+ ++ E R +++ L +P ++ +++ +F
Sbjct: 191 IFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 247
Query: 305 VAFEKQYGDREGIEDAIVGKRRF 327
+AFE GD I V KRRF
Sbjct: 248 LAFESNIGDLASILK--VEKRRF 268
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 34/151 (22%)
Query: 104 QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWY 163
Q D++ A +++ALE+D R+ W K + A + +A+ L PR + WY
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73
Query: 164 KYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHP 223
LGN + + + A + Y++ ++ P
Sbjct: 74 N-------LGNAY--------------------------YKQGDYDEAIEYYQKALELDP 100
Query: 224 KVS-TWIKYAKFEMKMGEVDRARNVYERAVE 253
+ + W K G+ D A Y++A+E
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
+I + + F+RA + + RAL + + + A V + I+ A + + RA+
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP---DQQGWLSYIKFELRYNEVE 209
L P + + + G+VA A + + P D L+ IK E +E
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE--QGNIE 322
Query: 210 RARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAV 252
A ++Y + ++ P+ + A + G++ A Y+ A+
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
>pdb|4E6H|A Chain A, Crystal Structure Of The Hat Domain Of K. Lactis Rna14
Length = 679
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 44/182 (24%)
Query: 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH--TLWLKYAE-VEMKNKFIN--- 142
W + +++ K EE D V R L + N+ +LWL Y V KN I
Sbjct: 103 WCMRLSLEFDKMEEL--DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGE 160
Query: 143 HARN--------VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG 194
ARN V D+ P+ Q W +Y+H E HW P
Sbjct: 161 EARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE----------------HWKPVN-- 202
Query: 195 WLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARNVYERA 251
KFE V+ R++Y+ + C P S W +Y ++E + ++ R++ E +
Sbjct: 203 -----KFE-EQQRVQYIRKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELS 255
Query: 252 VE 253
+
Sbjct: 256 AQ 257
>pdb|4E85|A Chain A, Crystal Structure Of Hat Domain Of Rna14
pdb|4E85|B Chain B, Crystal Structure Of Hat Domain Of Rna14
Length = 678
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 44/182 (24%)
Query: 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH--TLWLKYAE-VEMKNKFIN--- 142
W + +++ K EE D V R L + N+ +LWL Y V KN I
Sbjct: 102 WCMRLSLEFDKMEEL--DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGE 159
Query: 143 HARN--------VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG 194
ARN V D+ P+ Q W +Y+H E HW P
Sbjct: 160 EARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE----------------HWKPVN-- 201
Query: 195 WLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARNVYERA 251
KFE V+ R++Y+ + C P S W +Y ++E + ++ R++ E +
Sbjct: 202 -----KFE-EQQRVQYIRKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELS 254
Query: 252 VE 253
+
Sbjct: 255 AQ 256
>pdb|4EBA|A Chain A, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|B Chain B, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|C Chain C, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|D Chain D, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|E Chain E, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|F Chain F, Crystal Structure Of The Rna14-Rna15 Complex
Length = 645
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 44/182 (24%)
Query: 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH--TLWLKYAE-VEMKNKFIN--- 142
W + +++ K EE D V R L + N+ +LWL Y V KN I
Sbjct: 69 WCMRLSLEFDKMEEL--DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGE 126
Query: 143 HARN--------VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG 194
ARN V D+ P+ Q W +Y+H E HW P
Sbjct: 127 EARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE----------------HWKPVN-- 168
Query: 195 WLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARNVYERA 251
KFE V+ R++Y+ + C P S W +Y ++E + ++ R++ E +
Sbjct: 169 -----KFE-EQQRVQYIRKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELS 221
Query: 252 VE 253
+
Sbjct: 222 AQ 223
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 104 QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWY 163
Q D+ +A +++ALE+D N + W K A + +A+ L P + WY
Sbjct: 22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Query: 164 K 164
+
Sbjct: 82 R 82
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167
+E +N F N +N+ DR V + P + WY Y H
Sbjct: 107 GNLEPENGFENE-QNIADRLVAIFPAIQCYWYHYSH 141
>pdb|4H7X|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7X|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7Y|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7Y|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7Y|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7Y|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
Length = 161
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 190 PDQQGWL-SYIKFELRYNEVER------ARQIYERF-VQCHPKVSTWIKYAKFEMKMGEV 241
PD+ G S+ + ++R+ E++ AR ++ C I +A+FE+ G V
Sbjct: 51 PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNV 110
Query: 242 DRARNVYERAVEKLA 256
+++ + ++AVE+ A
Sbjct: 111 KKSKQLLQKAVERGA 125
>pdb|4ATI|A Chain A, Mitf:m-Box Complex
pdb|4ATI|B Chain B, Mitf:m-Box Complex
pdb|4ATK|A Chain A, Mitf:e-Box Complex
pdb|4ATK|B Chain B, Mitf:e-Box Complex
Length = 118
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 87 VRWNTGVWIKYAK--WEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK 137
+RWN G +K + + Q++ RA+ + R ++++ N L L+ E+EM+
Sbjct: 61 MRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQ 113
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQ-QGWLSYIKFELRYNEVERARQIYERF 218
+ WY + G+ A + +++ + P+ + W + + + + A + Y++
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 219 VQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQ 263
++ +P W K G+ D A Y++A+E ++ EA+Q
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
>pdb|1E6V|A Chain A, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|D Chain D, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 553
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 214 IYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYER---AVEKLADDEEAEQLFVAFA 269
+ E V+ HP + TW YAK + G+++ A + ++ +EKL +E+AEQL A
Sbjct: 149 VQEHMVEIHPGL-TWDCYAK--IITGDLELADEIDDKFLIDIEKLFPEEQAEQLIKAIG 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,551,130
Number of Sequences: 62578
Number of extensions: 520303
Number of successful extensions: 1438
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1386
Number of HSP's gapped (non-prelim): 49
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)