Query 015351
Match_columns 408
No_of_seqs 465 out of 2553
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1915 Cell cycle control pro 100.0 4.8E-51 1E-55 350.7 42.1 387 22-408 4-390 (677)
2 KOG4626 O-linked N-acetylgluco 100.0 6.9E-38 1.5E-42 278.0 23.6 290 73-375 200-491 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 4.2E-37 9.1E-42 273.0 26.5 336 41-400 135-472 (966)
4 KOG1915 Cell cycle control pro 100.0 9.5E-36 2.1E-40 256.7 33.4 371 29-408 35-531 (677)
5 KOG0495 HAT repeat protein [RN 100.0 7.3E-34 1.6E-38 253.7 32.0 366 26-406 464-873 (913)
6 TIGR00990 3a0801s09 mitochondr 100.0 2.6E-30 5.5E-35 251.1 43.1 314 71-408 141-566 (615)
7 PRK15174 Vi polysaccharide exp 100.0 7.8E-31 1.7E-35 254.0 39.3 314 71-408 56-376 (656)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9.9E-31 2.1E-35 267.1 39.6 314 71-408 581-895 (899)
9 PRK15174 Vi polysaccharide exp 100.0 4.6E-29 9.9E-34 241.7 40.5 321 40-375 60-387 (656)
10 TIGR00990 3a0801s09 mitochondr 100.0 2.3E-29 5.1E-34 244.4 37.0 294 71-375 174-577 (615)
11 KOG0495 HAT repeat protein [RN 100.0 5.8E-29 1.3E-33 222.6 36.1 258 111-383 536-794 (913)
12 PRK11447 cellulose synthase su 100.0 3.6E-29 7.7E-34 258.0 40.2 315 71-408 283-695 (1157)
13 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-29 6.6E-34 256.2 39.4 309 75-408 551-861 (899)
14 PRK11447 cellulose synthase su 100.0 7.5E-29 1.6E-33 255.7 38.6 350 41-408 288-735 (1157)
15 KOG0547 Translocase of outer m 100.0 4.3E-26 9.3E-31 198.1 31.9 338 39-408 106-561 (606)
16 PRK10049 pgaA outer membrane p 100.0 3.2E-25 7E-30 219.3 40.2 318 71-407 63-450 (765)
17 PRK11788 tetratricopeptide rep 100.0 4.4E-25 9.5E-30 204.0 37.2 264 98-374 42-316 (389)
18 PRK11788 tetratricopeptide rep 100.0 9.4E-25 2E-29 201.8 36.2 285 71-368 49-346 (389)
19 PRK10049 pgaA outer membrane p 100.0 1.7E-24 3.6E-29 214.3 38.6 317 71-408 29-417 (765)
20 PRK09782 bacteriophage N4 rece 99.9 2E-24 4.3E-29 214.2 35.9 284 75-374 459-745 (987)
21 KOG2076 RNA polymerase III tra 99.9 1.7E-23 3.8E-28 194.5 38.8 324 71-404 153-546 (895)
22 KOG1126 DNA-binding cell divis 99.9 3.2E-25 7E-30 200.0 26.2 289 74-375 336-626 (638)
23 PRK09782 bacteriophage N4 rece 99.9 4.9E-24 1.1E-28 211.4 36.1 311 71-407 390-734 (987)
24 KOG2002 TPR-containing nuclear 99.9 2E-24 4.4E-29 201.9 28.3 322 71-408 321-704 (1018)
25 PF13429 TPR_15: Tetratricopep 99.9 2E-26 4.4E-31 202.3 14.0 269 85-369 4-277 (280)
26 PF13429 TPR_15: Tetratricopep 99.9 1.2E-25 2.7E-30 197.3 14.0 266 119-408 4-272 (280)
27 KOG1155 Anaphase-promoting com 99.9 2.6E-22 5.7E-27 173.7 32.1 298 89-405 162-528 (559)
28 KOG1126 DNA-binding cell divis 99.9 2.6E-23 5.6E-28 187.8 25.9 292 93-407 319-614 (638)
29 KOG1155 Anaphase-promoting com 99.9 2.8E-22 6E-27 173.5 30.6 288 75-375 245-542 (559)
30 KOG2047 mRNA splicing factor [ 99.9 1.4E-22 2.9E-27 181.8 28.8 310 85-405 343-715 (835)
31 KOG2002 TPR-containing nuclear 99.9 4.9E-22 1.1E-26 186.1 33.1 317 73-407 146-475 (1018)
32 KOG0547 Translocase of outer m 99.9 3.3E-22 7.2E-27 174.1 29.3 323 40-375 133-572 (606)
33 KOG1173 Anaphase-promoting com 99.9 2.6E-22 5.5E-27 177.9 27.3 275 89-374 242-523 (611)
34 KOG2076 RNA polymerase III tra 99.9 2.6E-21 5.7E-26 180.1 34.4 298 91-407 139-506 (895)
35 TIGR00540 hemY_coli hemY prote 99.9 1.1E-20 2.5E-25 174.2 36.1 293 95-408 88-394 (409)
36 KOG2047 mRNA splicing factor [ 99.9 6.4E-21 1.4E-25 171.1 31.8 283 73-364 363-718 (835)
37 TIGR00540 hemY_coli hemY prote 99.9 2.1E-20 4.6E-25 172.4 35.3 287 71-369 98-399 (409)
38 PRK14574 hmsH outer membrane p 99.9 8.3E-20 1.8E-24 178.1 38.2 347 40-406 52-506 (822)
39 PLN03218 maturation of RBCL 1; 99.9 2.3E-19 5E-24 179.6 41.1 310 74-407 454-777 (1060)
40 KOG0624 dsRNA-activated protei 99.9 1.2E-20 2.7E-25 157.6 25.5 286 87-375 34-376 (504)
41 PRK12370 invasion protein regu 99.9 2E-20 4.4E-25 178.8 30.8 264 87-369 252-535 (553)
42 PRK12370 invasion protein regu 99.9 1.5E-20 3.3E-25 179.6 30.0 214 73-291 277-502 (553)
43 KOG1173 Anaphase-promoting com 99.9 1.6E-20 3.4E-25 166.6 27.4 267 73-349 260-532 (611)
44 PRK11189 lipoprotein NlpI; Pro 99.9 4E-20 8.7E-25 162.6 29.4 230 74-310 43-283 (296)
45 PLN03218 maturation of RBCL 1; 99.9 4.9E-19 1.1E-23 177.3 40.2 309 75-408 424-743 (1060)
46 KOG0624 dsRNA-activated protei 99.9 6.5E-20 1.4E-24 153.3 27.3 271 71-349 52-384 (504)
47 PRK10747 putative protoheme IX 99.9 3.8E-19 8.3E-24 163.2 35.3 283 98-408 91-385 (398)
48 PLN03081 pentatricopeptide (PP 99.9 9.7E-20 2.1E-24 179.9 32.4 290 91-408 259-552 (697)
49 PRK10747 putative protoheme IX 99.9 8.2E-19 1.8E-23 161.0 34.5 282 71-370 98-391 (398)
50 PRK14574 hmsH outer membrane p 99.9 3.3E-18 7.2E-23 167.0 37.0 320 71-408 48-474 (822)
51 COG3063 PilF Tfp pilus assembl 99.9 2.4E-19 5.2E-24 142.4 23.6 201 92-295 36-240 (250)
52 TIGR02521 type_IV_pilW type IV 99.9 5.7E-19 1.2E-23 151.0 26.9 201 90-293 30-234 (234)
53 PLN03081 pentatricopeptide (PP 99.9 7.7E-19 1.7E-23 173.5 29.7 281 71-369 273-557 (697)
54 KOG1070 rRNA processing protei 99.9 1.7E-18 3.6E-23 167.6 29.7 251 76-331 1443-1703(1710)
55 KOG1174 Anaphase-promoting com 99.9 2.3E-18 4.9E-23 147.5 27.3 286 76-375 217-506 (564)
56 KOG4162 Predicted calmodulin-b 99.8 3.6E-18 7.8E-23 157.0 30.4 294 71-375 458-789 (799)
57 KOG1174 Anaphase-promoting com 99.8 4.5E-18 9.8E-23 145.7 28.5 299 86-407 190-494 (564)
58 PLN03077 Protein ECB2; Provisi 99.8 4.2E-18 9E-23 172.3 33.3 306 74-407 406-714 (857)
59 KOG4162 Predicted calmodulin-b 99.8 1.7E-17 3.7E-22 152.6 33.8 318 71-408 337-778 (799)
60 PRK11189 lipoprotein NlpI; Pro 99.8 3E-18 6.6E-23 150.8 27.8 225 105-373 40-269 (296)
61 COG3063 PilF Tfp pilus assembl 99.8 2.9E-18 6.3E-23 136.2 24.5 204 126-342 36-243 (250)
62 KOG1129 TPR repeat-containing 99.8 4.4E-19 9.6E-24 147.5 19.8 261 103-375 191-464 (478)
63 KOG0548 Molecular co-chaperone 99.8 2.8E-17 6.1E-22 145.6 32.0 202 164-375 229-461 (539)
64 KOG1129 TPR repeat-containing 99.8 1.6E-19 3.4E-24 150.1 16.5 243 95-348 227-471 (478)
65 KOG1156 N-terminal acetyltrans 99.8 1E-16 2.2E-21 144.9 34.7 221 72-295 22-252 (700)
66 COG2956 Predicted N-acetylgluc 99.8 8.4E-17 1.8E-21 133.9 30.8 282 70-367 48-345 (389)
67 TIGR02521 type_IV_pilW type IV 99.8 1.5E-17 3.2E-22 142.2 27.5 201 124-337 30-234 (234)
68 KOG1125 TPR repeat-containing 99.8 2.3E-18 5E-23 153.6 21.9 251 95-359 289-561 (579)
69 KOG0548 Molecular co-chaperone 99.8 8.5E-17 1.8E-21 142.6 30.5 317 71-408 16-450 (539)
70 KOG1070 rRNA processing protei 99.8 1.3E-17 2.7E-22 161.6 27.1 239 144-401 1443-1688(1710)
71 KOG1127 TPR repeat-containing 99.8 5.2E-18 1.1E-22 159.4 22.9 314 73-407 474-907 (1238)
72 PLN03077 Protein ECB2; Provisi 99.8 2.7E-17 5.9E-22 166.4 30.2 279 71-368 438-719 (857)
73 KOG1125 TPR repeat-containing 99.8 1.5E-18 3.3E-23 154.8 17.8 240 71-315 299-559 (579)
74 PLN02789 farnesyltranstransfer 99.8 1.1E-16 2.4E-21 140.4 27.1 199 73-274 53-267 (320)
75 COG2956 Predicted N-acetylgluc 99.8 9.7E-16 2.1E-20 127.6 29.8 260 101-374 45-316 (389)
76 PLN02789 farnesyltranstransfer 99.8 3.4E-16 7.5E-21 137.3 27.6 241 101-346 47-313 (320)
77 cd05804 StaR_like StaR_like; a 99.8 1.2E-14 2.6E-19 132.6 34.5 313 87-407 2-330 (355)
78 KOG1156 N-terminal acetyltrans 99.7 3.5E-14 7.6E-19 128.7 33.8 208 49-257 34-251 (700)
79 KOG2003 TPR repeat-containing 99.7 9.6E-16 2.1E-20 133.2 22.7 236 73-313 472-709 (840)
80 TIGR03302 OM_YfiO outer membra 99.7 1.9E-15 4.1E-20 129.4 24.5 191 87-293 29-234 (235)
81 KOG2003 TPR repeat-containing 99.7 2.8E-15 6E-20 130.4 24.3 267 96-375 424-695 (840)
82 KOG1914 mRNA cleavage and poly 99.7 5.7E-14 1.2E-18 124.7 32.8 347 46-406 10-494 (656)
83 KOG1840 Kinesin light chain [C 99.7 8.8E-15 1.9E-19 134.1 28.1 248 119-368 193-478 (508)
84 KOG0550 Molecular chaperone (D 99.7 5.7E-16 1.2E-20 133.0 18.6 273 73-372 65-353 (486)
85 KOG1127 TPR repeat-containing 99.7 3.3E-15 7.2E-20 140.9 22.6 185 104-291 471-659 (1238)
86 PRK15359 type III secretion sy 99.7 1.4E-15 3E-20 118.5 16.0 125 77-204 13-138 (144)
87 KOG0550 Molecular chaperone (D 99.7 1.2E-14 2.7E-19 124.9 22.3 249 42-294 69-353 (486)
88 cd05804 StaR_like StaR_like; a 99.7 2.8E-13 6.1E-18 123.6 32.7 288 74-370 23-337 (355)
89 KOG1840 Kinesin light chain [C 99.7 1.1E-14 2.4E-19 133.5 22.3 222 69-290 211-478 (508)
90 PF12569 NARP1: NMDA receptor- 99.7 1.1E-12 2.5E-17 121.8 34.4 304 91-407 4-328 (517)
91 PRK14720 transcript cleavage f 99.7 8.8E-14 1.9E-18 134.8 26.6 224 85-351 25-268 (906)
92 COG3071 HemY Uncharacterized e 99.7 2.7E-12 5.8E-17 110.5 31.9 279 102-407 95-384 (400)
93 COG3071 HemY Uncharacterized e 99.6 6.2E-12 1.4E-16 108.3 32.9 282 71-369 98-390 (400)
94 KOG2376 Signal recognition par 99.6 7.2E-12 1.6E-16 112.8 34.6 114 262-376 376-494 (652)
95 KOG1258 mRNA processing protei 99.6 6.8E-12 1.5E-16 113.8 33.7 311 74-404 62-420 (577)
96 PRK10370 formate-dependent nit 99.6 2.3E-14 4.9E-19 117.8 16.4 118 74-191 56-176 (198)
97 PRK15359 type III secretion sy 99.6 4.4E-14 9.4E-19 110.1 14.9 121 111-234 13-135 (144)
98 TIGR03302 OM_YfiO outer membra 99.6 5.2E-13 1.1E-17 114.3 21.9 187 156-372 30-235 (235)
99 KOG2396 HAT (Half-A-TPR) repea 99.6 6.5E-11 1.4E-15 104.8 34.5 323 75-407 89-553 (568)
100 PF12569 NARP1: NMDA receptor- 99.6 1.4E-11 2.9E-16 114.7 30.6 286 71-371 18-336 (517)
101 KOG3060 Uncharacterized conser 99.6 6.4E-12 1.4E-16 101.7 24.5 168 170-347 63-232 (289)
102 KOG1914 mRNA cleavage and poly 99.6 1.1E-11 2.3E-16 110.5 28.1 284 81-398 10-343 (656)
103 PRK10370 formate-dependent nit 99.6 1.8E-13 4E-18 112.4 16.0 121 138-258 52-177 (198)
104 PRK15179 Vi polysaccharide bio 99.6 8E-13 1.7E-17 127.3 22.3 146 78-223 73-219 (694)
105 KOG1128 Uncharacterized conser 99.6 1.7E-12 3.6E-17 119.6 22.6 274 74-368 415-700 (777)
106 KOG3060 Uncharacterized conser 99.5 9E-12 2E-16 100.9 23.7 161 97-257 58-223 (289)
107 TIGR02552 LcrH_SycD type III s 99.5 3.5E-13 7.5E-18 104.7 15.4 114 78-191 4-117 (135)
108 COG5010 TadD Flp pilus assembl 99.5 2E-12 4.2E-17 105.6 19.6 175 76-251 52-228 (257)
109 KOG1128 Uncharacterized conser 99.5 1.4E-12 3E-17 120.1 19.3 218 126-369 399-616 (777)
110 KOG1258 mRNA processing protei 99.5 3.8E-11 8.2E-16 109.1 28.2 302 89-408 43-390 (577)
111 PRK15179 Vi polysaccharide bio 99.5 5.7E-12 1.2E-16 121.5 22.6 166 92-257 50-220 (694)
112 KOG3785 Uncharacterized conser 99.5 4.5E-10 9.7E-15 95.5 30.3 321 73-407 38-451 (557)
113 COG5010 TadD Flp pilus assembl 99.5 9E-12 2E-16 101.8 19.4 178 109-290 51-230 (257)
114 PRK14720 transcript cleavage f 99.5 2.2E-11 4.7E-16 118.5 25.5 227 119-375 25-258 (906)
115 TIGR02552 LcrH_SycD type III s 99.5 2.5E-12 5.4E-17 99.9 15.5 114 112-225 4-118 (135)
116 COG5107 RNA14 Pre-mRNA 3'-end 99.5 6.4E-10 1.4E-14 97.4 30.0 255 35-294 21-334 (660)
117 KOG2376 Signal recognition par 99.5 1.6E-09 3.5E-14 98.0 33.3 115 71-189 26-140 (652)
118 PRK15363 pathogenicity island 99.4 6.6E-12 1.4E-16 95.9 14.9 107 84-190 27-134 (157)
119 COG4783 Putative Zn-dependent 99.4 7.7E-11 1.7E-15 104.4 22.3 154 88-257 303-457 (484)
120 PF05843 Suf: Suppressor of fo 99.4 1.7E-11 3.7E-16 106.7 17.8 141 193-344 2-145 (280)
121 PF04733 Coatomer_E: Coatomer 99.4 1.8E-11 3.9E-16 106.4 16.9 255 99-374 9-270 (290)
122 PRK04841 transcriptional regul 99.4 1.5E-09 3.3E-14 111.5 33.4 305 91-407 409-754 (903)
123 PF05843 Suf: Suppressor of fo 99.4 2.3E-11 4.9E-16 105.9 16.7 134 92-225 2-140 (280)
124 COG4235 Cytochrome c biogenesi 99.3 5.9E-11 1.3E-15 99.7 15.8 126 74-199 139-267 (287)
125 KOG0553 TPR repeat-containing 99.3 1.7E-11 3.6E-16 102.2 11.9 117 93-209 83-200 (304)
126 KOG0553 TPR repeat-containing 99.3 2.3E-11 5E-16 101.3 12.5 114 129-242 85-200 (304)
127 KOG2396 HAT (Half-A-TPR) repea 99.3 7.9E-09 1.7E-13 91.9 28.0 102 261-370 459-560 (568)
128 PRK15363 pathogenicity island 99.3 1.5E-10 3.2E-15 88.5 14.9 104 119-222 28-133 (157)
129 KOG4340 Uncharacterized conser 99.3 3.3E-09 7.1E-14 88.3 23.4 148 73-220 26-206 (459)
130 PRK04841 transcriptional regul 99.3 1.2E-08 2.5E-13 105.0 33.4 296 72-375 424-766 (903)
131 PRK10866 outer membrane biogen 99.3 5.1E-09 1.1E-13 88.9 24.8 184 90-288 31-238 (243)
132 PLN03088 SGT1, suppressor of 99.3 1.8E-10 3.8E-15 104.0 16.1 111 94-204 5-116 (356)
133 PF14938 SNAP: Soluble NSF att 99.2 2.6E-09 5.6E-14 93.5 21.4 208 98-339 42-270 (282)
134 COG4783 Putative Zn-dependent 99.2 5.2E-09 1.1E-13 93.1 22.7 155 121-295 302-458 (484)
135 PF13525 YfiO: Outer membrane 99.2 5.7E-09 1.2E-13 86.6 22.0 171 90-282 4-198 (203)
136 KOG3785 Uncharacterized conser 99.2 2.5E-08 5.5E-13 85.0 25.1 262 102-378 33-320 (557)
137 COG5107 RNA14 Pre-mRNA 3'-end 99.2 1.9E-08 4.1E-13 88.4 23.4 280 79-372 30-334 (660)
138 cd00189 TPR Tetratricopeptide 99.2 4.9E-10 1.1E-14 80.8 11.9 98 93-190 2-99 (100)
139 PLN03088 SGT1, suppressor of 99.2 3.5E-10 7.5E-15 102.1 13.0 101 72-172 17-117 (356)
140 PF04733 Coatomer_E: Coatomer 99.2 9.1E-10 2E-14 95.8 15.0 201 88-296 63-270 (290)
141 COG4235 Cytochrome c biogenesi 99.2 2E-09 4.4E-14 90.5 16.0 117 141-257 138-259 (287)
142 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.4E-09 3.1E-14 82.2 13.8 101 91-191 2-108 (119)
143 PF13414 TPR_11: TPR repeat; P 99.1 2.5E-10 5.3E-15 77.0 8.1 67 90-156 2-69 (69)
144 PRK02603 photosystem I assembl 99.1 3.3E-09 7.1E-14 85.8 15.5 119 87-224 31-152 (172)
145 PF09976 TPR_21: Tetratricopep 99.1 5.9E-09 1.3E-13 81.6 16.1 115 103-218 23-144 (145)
146 KOG1130 Predicted G-alpha GTPa 99.1 3.6E-09 7.7E-14 91.8 15.3 264 98-369 24-344 (639)
147 PF13432 TPR_16: Tetratricopep 99.1 4.9E-10 1.1E-14 74.4 7.9 64 96-159 2-65 (65)
148 KOG4340 Uncharacterized conser 99.1 5.3E-08 1.2E-12 81.2 21.1 180 102-286 21-202 (459)
149 PRK10153 DNA-binding transcrip 99.1 7.1E-09 1.5E-13 97.5 18.2 140 85-224 331-485 (517)
150 PF13414 TPR_11: TPR repeat; P 99.1 7.6E-10 1.6E-14 74.6 8.6 67 124-190 2-69 (69)
151 PF13525 YfiO: Outer membrane 99.1 4.5E-08 9.7E-13 81.2 20.7 160 192-359 5-197 (203)
152 PRK11906 transcriptional regul 99.1 7.6E-09 1.6E-13 92.5 16.6 147 73-220 274-435 (458)
153 COG3898 Uncharacterized membra 99.1 1.5E-06 3.2E-11 75.4 29.2 282 98-405 91-384 (531)
154 cd00189 TPR Tetratricopeptide 99.1 4E-09 8.7E-14 75.9 12.1 97 127-223 2-99 (100)
155 PF09976 TPR_21: Tetratricopep 99.1 1.1E-08 2.4E-13 80.1 15.3 114 172-289 24-145 (145)
156 PRK10866 outer membrane biogen 99.1 4.3E-07 9.2E-12 77.3 25.6 175 123-316 30-230 (243)
157 PRK15331 chaperone protein Sic 99.1 5.8E-09 1.3E-13 80.2 12.7 104 85-188 31-134 (165)
158 TIGR02795 tol_pal_ybgF tol-pal 99.1 7.9E-09 1.7E-13 78.1 13.6 99 126-224 3-108 (119)
159 CHL00033 ycf3 photosystem I as 99.0 9.7E-09 2.1E-13 82.7 14.8 98 76-173 18-120 (168)
160 COG0457 NrfG FOG: TPR repeat [ 99.0 8E-07 1.7E-11 75.7 27.7 219 73-294 39-268 (291)
161 PF12895 Apc3: Anaphase-promot 99.0 8.9E-10 1.9E-14 77.4 7.4 80 104-184 2-83 (84)
162 PRK02603 photosystem I assembl 99.0 1.3E-08 2.9E-13 82.2 15.3 118 121-257 31-152 (172)
163 PF14938 SNAP: Soluble NSF att 99.0 2.7E-07 5.9E-12 80.9 24.3 103 263-373 115-229 (282)
164 PRK10153 DNA-binding transcrip 99.0 1.3E-08 2.8E-13 95.7 16.9 118 73-191 358-485 (517)
165 CHL00033 ycf3 photosystem I as 99.0 3.1E-08 6.8E-13 79.8 16.1 113 225-340 35-154 (168)
166 PRK11906 transcriptional regul 99.0 8.1E-08 1.8E-12 86.1 19.3 170 83-253 240-435 (458)
167 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 2.3E-08 5.1E-13 89.9 15.7 122 95-219 173-295 (395)
168 PF12895 Apc3: Anaphase-promot 99.0 1.9E-09 4.2E-14 75.6 6.9 80 71-151 3-84 (84)
169 KOG0128 RNA-binding protein SA 99.0 3.6E-06 7.8E-11 79.8 30.1 111 77-188 99-219 (881)
170 COG0457 NrfG FOG: TPR repeat [ 99.0 1.1E-05 2.5E-10 68.5 31.6 204 160-372 60-268 (291)
171 PF14559 TPR_19: Tetratricopep 98.9 3.7E-09 7.9E-14 71.0 7.1 66 102-167 2-67 (68)
172 KOG2053 Mitochondrial inherita 98.9 2.1E-05 4.5E-10 75.4 33.7 220 73-295 25-259 (932)
173 PRK10803 tol-pal system protei 98.9 4E-08 8.8E-13 84.0 14.6 99 126-224 143-249 (263)
174 PRK10803 tol-pal system protei 98.9 3.8E-08 8.3E-13 84.2 14.5 100 92-191 143-249 (263)
175 KOG2053 Mitochondrial inherita 98.9 6.9E-06 1.5E-10 78.6 30.2 227 103-339 21-259 (932)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 3.4E-08 7.3E-13 88.9 14.3 112 71-185 183-294 (395)
177 COG3898 Uncharacterized membra 98.9 6.3E-06 1.4E-10 71.7 27.1 249 68-335 131-392 (531)
178 KOG3081 Vesicle coat complex C 98.9 5.7E-06 1.2E-10 68.3 25.6 254 98-374 15-276 (299)
179 COG4785 NlpI Lipoprotein NlpI, 98.9 4.7E-07 1E-11 72.2 18.7 192 93-292 67-267 (297)
180 PF13432 TPR_16: Tetratricopep 98.9 8.4E-09 1.8E-13 68.4 7.8 62 130-191 2-63 (65)
181 KOG1130 Predicted G-alpha GTPa 98.9 4.8E-08 1E-12 85.0 13.3 254 73-334 33-343 (639)
182 PF08424 NRDE-2: NRDE-2, neces 98.9 2.7E-07 5.9E-12 82.1 18.6 112 77-188 5-131 (321)
183 COG4700 Uncharacterized protei 98.9 7.4E-07 1.6E-11 69.3 18.2 145 140-289 71-220 (251)
184 COG4105 ComL DNA uptake lipopr 98.9 5.2E-06 1.1E-10 68.8 23.9 186 91-295 34-237 (254)
185 PF12688 TPR_5: Tetratrico pep 98.9 1.9E-07 4.2E-12 69.2 14.1 96 92-187 2-103 (120)
186 PF13371 TPR_9: Tetratricopept 98.8 2.7E-08 5.8E-13 67.8 8.4 68 98-165 2-69 (73)
187 KOG0543 FKBP-type peptidyl-pro 98.8 1.9E-07 4E-12 81.8 15.3 131 93-223 210-357 (397)
188 KOG3617 WD40 and TPR repeat-co 98.8 3.3E-05 7.2E-10 73.4 29.7 140 71-220 814-995 (1416)
189 PRK15331 chaperone protein Sic 98.8 2.1E-07 4.6E-12 71.7 13.0 102 120-221 32-134 (165)
190 KOG3617 WD40 and TPR repeat-co 98.8 9.8E-06 2.1E-10 76.9 25.9 187 91-289 757-994 (1416)
191 KOG1941 Acetylcholine receptor 98.8 1.2E-05 2.6E-10 69.3 24.3 292 74-368 23-359 (518)
192 COG4700 Uncharacterized protei 98.8 3.6E-06 7.9E-11 65.6 18.9 136 216-363 80-216 (251)
193 PF14559 TPR_19: Tetratricopep 98.8 2.6E-08 5.7E-13 66.7 6.4 64 71-134 5-68 (68)
194 KOG0128 RNA-binding protein SA 98.7 6.7E-06 1.4E-10 78.0 23.7 284 88-383 76-388 (881)
195 PF12688 TPR_5: Tetratrico pep 98.7 5E-07 1.1E-11 67.0 12.8 97 194-290 3-103 (120)
196 KOG1941 Acetylcholine receptor 98.7 1.5E-05 3.2E-10 68.7 22.6 295 98-404 13-351 (518)
197 KOG3081 Vesicle coat complex C 98.7 1.2E-05 2.5E-10 66.6 20.8 192 96-295 77-275 (299)
198 COG4785 NlpI Lipoprotein NlpI, 98.7 1.4E-05 3E-10 64.0 20.4 178 71-256 79-268 (297)
199 KOG0543 FKBP-type peptidyl-pro 98.6 1.2E-06 2.7E-11 76.7 14.6 99 263-371 258-357 (397)
200 KOG4234 TPR repeat-containing 98.6 4.4E-06 9.5E-11 65.9 15.9 100 92-191 96-200 (271)
201 PF08424 NRDE-2: NRDE-2, neces 98.6 5.1E-06 1.1E-10 74.0 18.4 144 112-255 6-184 (321)
202 PF13512 TPR_18: Tetratricopep 98.6 1.7E-06 3.7E-11 65.3 12.8 105 192-296 10-133 (142)
203 PF13371 TPR_9: Tetratricopept 98.6 3.7E-07 7.9E-12 62.1 8.5 60 132-191 2-61 (73)
204 COG4105 ComL DNA uptake lipopr 98.6 3.4E-05 7.4E-10 64.0 21.1 174 192-374 34-237 (254)
205 COG1729 Uncharacterized protei 98.6 1.7E-06 3.8E-11 72.2 13.0 97 128-224 144-247 (262)
206 COG1729 Uncharacterized protei 98.5 4.3E-06 9.4E-11 69.9 14.1 96 162-257 144-247 (262)
207 PF13428 TPR_14: Tetratricopep 98.5 3.1E-07 6.8E-12 55.1 5.3 42 92-133 2-43 (44)
208 PF06552 TOM20_plant: Plant sp 98.5 2.6E-06 5.6E-11 66.4 11.0 87 73-159 7-114 (186)
209 PF13512 TPR_18: Tetratricopep 98.5 1.1E-05 2.5E-10 60.9 14.1 68 92-159 11-81 (142)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 8.7E-07 1.9E-11 79.5 9.5 70 86-155 70-142 (453)
211 KOG1586 Protein required for f 98.5 0.00025 5.5E-09 57.6 22.0 123 173-295 87-228 (288)
212 PF06552 TOM20_plant: Plant sp 98.4 5.1E-06 1.1E-10 64.8 11.2 67 107-173 7-83 (186)
213 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 2E-06 4.3E-11 77.2 9.7 70 120-189 70-142 (453)
214 PF13428 TPR_14: Tetratricopep 98.4 1E-06 2.2E-11 52.9 5.3 43 125-167 1-43 (44)
215 PF02259 FAT: FAT domain; Int 98.4 0.0012 2.7E-08 60.1 27.8 145 192-338 146-341 (352)
216 KOG0985 Vesicle coat protein c 98.4 0.00071 1.5E-08 66.2 26.1 228 97-371 1054-1310(1666)
217 KOG4648 Uncharacterized conser 98.3 1.4E-07 3E-12 80.3 0.6 231 94-343 100-338 (536)
218 KOG4555 TPR repeat-containing 98.3 3.2E-05 6.9E-10 56.6 12.4 94 98-191 50-147 (175)
219 KOG4555 TPR repeat-containing 98.3 1.8E-05 3.9E-10 57.9 11.2 91 132-222 50-145 (175)
220 KOG2796 Uncharacterized conser 98.3 5.3E-05 1.2E-09 62.6 15.1 138 227-374 179-320 (366)
221 PF04184 ST7: ST7 protein; In 98.3 0.0003 6.4E-09 63.8 20.4 218 137-369 180-414 (539)
222 PF02259 FAT: FAT domain; Int 98.3 0.00089 1.9E-08 61.0 24.6 127 224-352 145-304 (352)
223 KOG2796 Uncharacterized conser 98.3 0.00042 9.2E-09 57.4 19.2 145 128-272 180-333 (366)
224 KOG4234 TPR repeat-containing 98.3 4E-05 8.6E-10 60.6 12.7 99 131-257 101-200 (271)
225 KOG1586 Protein required for f 98.2 0.0016 3.5E-08 53.1 24.6 130 127-257 76-227 (288)
226 KOG2471 TPR repeat-containing 98.2 0.0005 1.1E-08 62.0 20.9 142 130-274 211-381 (696)
227 PF04184 ST7: ST7 protein; In 98.2 8.3E-05 1.8E-09 67.2 15.7 110 74-185 185-321 (539)
228 KOG4642 Chaperone-dependent E3 98.2 2.5E-05 5.5E-10 63.5 11.1 84 71-154 24-107 (284)
229 KOG2471 TPR repeat-containing 98.2 0.00032 6.9E-09 63.2 18.9 103 69-171 252-381 (696)
230 PF13424 TPR_12: Tetratricopep 98.2 3E-06 6.4E-11 58.4 4.7 63 91-153 5-74 (78)
231 KOG4642 Chaperone-dependent E3 98.2 2E-05 4.4E-10 64.0 9.9 104 98-201 17-126 (284)
232 PF13431 TPR_17: Tetratricopep 98.2 2.4E-06 5.2E-11 47.7 3.2 34 328-361 1-34 (34)
233 PF13424 TPR_12: Tetratricopep 98.2 4E-06 8.7E-11 57.7 5.0 63 125-187 5-74 (78)
234 COG5191 Uncharacterized conser 98.1 6.1E-06 1.3E-10 69.5 6.4 94 78-171 94-188 (435)
235 KOG4648 Uncharacterized conser 98.1 1.6E-05 3.4E-10 68.1 8.9 124 36-168 85-208 (536)
236 PF13431 TPR_17: Tetratricopep 98.1 2.9E-06 6.2E-11 47.4 3.0 32 80-111 2-33 (34)
237 PF13281 DUF4071: Domain of un 98.0 0.0027 5.8E-08 56.8 21.2 170 126-295 142-338 (374)
238 KOG3616 Selective LIM binding 98.0 0.0084 1.8E-07 57.1 24.8 44 71-115 458-501 (1636)
239 KOG2610 Uncharacterized conser 98.0 0.00027 5.9E-09 60.6 13.8 145 75-219 121-274 (491)
240 PF13281 DUF4071: Domain of un 98.0 0.0017 3.6E-08 58.1 18.9 168 90-257 140-337 (374)
241 KOG2300 Uncharacterized conser 97.9 0.014 3.1E-07 52.9 32.0 113 74-186 26-154 (629)
242 KOG0530 Protein farnesyltransf 97.9 0.0067 1.4E-07 50.5 20.4 223 37-272 34-269 (318)
243 COG5191 Uncharacterized conser 97.9 0.00021 4.6E-09 60.5 12.0 138 65-203 26-187 (435)
244 KOG1585 Protein required for f 97.9 0.0052 1.1E-07 50.6 19.1 164 96-290 36-218 (308)
245 KOG4507 Uncharacterized conser 97.9 0.001 2.3E-08 61.3 16.8 115 76-191 198-315 (886)
246 KOG3616 Selective LIM binding 97.9 0.0047 1E-07 58.7 21.3 64 338-407 993-1057(1636)
247 COG3118 Thioredoxin domain-con 97.9 0.0019 4.2E-08 54.8 16.7 144 229-385 138-281 (304)
248 KOG2610 Uncharacterized conser 97.8 0.00094 2E-08 57.4 14.4 155 98-252 110-274 (491)
249 KOG0530 Protein farnesyltransf 97.8 0.013 2.8E-07 48.9 20.2 237 105-346 57-309 (318)
250 KOG0545 Aryl-hydrocarbon recep 97.8 0.00082 1.8E-08 55.2 12.7 101 91-191 178-296 (329)
251 PF03704 BTAD: Bacterial trans 97.8 0.001 2.2E-08 52.0 13.2 88 98-185 13-122 (146)
252 KOG0890 Protein kinase of the 97.8 0.039 8.6E-07 59.5 27.5 309 73-393 1465-1856(2382)
253 KOG0985 Vesicle coat protein c 97.8 0.027 5.9E-07 55.8 24.5 46 265-312 1282-1327(1666)
254 PF07719 TPR_2: Tetratricopept 97.7 8.5E-05 1.8E-09 41.6 4.6 32 92-123 2-33 (34)
255 PF10300 DUF3808: Protein of u 97.7 0.0056 1.2E-07 57.7 19.3 176 111-291 177-376 (468)
256 PF07719 TPR_2: Tetratricopept 97.7 9.5E-05 2.1E-09 41.3 4.7 34 340-373 1-34 (34)
257 PF00515 TPR_1: Tetratricopept 97.7 9.1E-05 2E-09 41.4 4.3 34 340-373 1-34 (34)
258 PF00515 TPR_1: Tetratricopept 97.7 7.9E-05 1.7E-09 41.7 3.9 31 93-123 3-33 (34)
259 KOG0376 Serine-threonine phosp 97.7 7.4E-05 1.6E-09 67.2 5.6 100 71-170 18-117 (476)
260 COG3118 Thioredoxin domain-con 97.7 0.012 2.7E-07 50.1 18.2 145 129-276 138-286 (304)
261 COG2976 Uncharacterized protei 97.7 0.0081 1.8E-07 47.9 16.1 136 140-295 49-192 (207)
262 PF03704 BTAD: Bacterial trans 97.6 0.0061 1.3E-07 47.6 15.3 105 132-253 13-124 (146)
263 KOG1464 COP9 signalosome, subu 97.6 0.0081 1.7E-07 50.3 16.1 194 174-376 42-267 (440)
264 KOG0376 Serine-threonine phosp 97.6 0.00019 4.1E-09 64.7 6.8 104 98-201 11-115 (476)
265 PF10300 DUF3808: Protein of u 97.6 0.0019 4.1E-08 60.8 13.4 114 140-253 248-375 (468)
266 KOG1308 Hsp70-interacting prot 97.5 9.9E-05 2.1E-09 63.4 4.3 123 98-220 121-243 (377)
267 KOG1464 COP9 signalosome, subu 97.5 0.036 7.9E-07 46.5 18.8 45 74-118 44-92 (440)
268 PF04910 Tcf25: Transcriptiona 97.5 0.02 4.3E-07 51.9 18.9 96 162-257 106-225 (360)
269 KOG2041 WD40 repeat protein [G 97.5 0.037 8.1E-07 52.6 20.0 181 82-287 684-877 (1189)
270 COG2976 Uncharacterized protei 97.5 0.027 5.8E-07 45.0 16.3 137 105-257 48-191 (207)
271 PF04910 Tcf25: Transcriptiona 97.4 0.015 3.2E-07 52.7 17.2 141 82-224 31-225 (360)
272 KOG1585 Protein required for f 97.4 0.055 1.2E-06 44.9 21.5 188 168-364 40-251 (308)
273 PF08311 Mad3_BUB1_I: Mad3/BUB 97.3 0.0074 1.6E-07 45.5 11.9 105 76-186 4-126 (126)
274 PF08631 SPO22: Meiosis protei 97.3 0.11 2.5E-06 45.4 24.0 120 171-293 5-152 (278)
275 PF13181 TPR_8: Tetratricopept 97.3 0.00071 1.5E-08 37.7 4.3 32 92-123 2-33 (34)
276 KOG2300 Uncharacterized conser 97.1 0.2 4.4E-06 45.8 23.2 181 132-313 330-540 (629)
277 PF13181 TPR_8: Tetratricopept 97.1 0.00092 2E-08 37.2 3.9 32 341-372 2-33 (34)
278 KOG0545 Aryl-hydrocarbon recep 97.1 0.023 5E-07 46.9 13.1 67 226-295 231-297 (329)
279 KOG3824 Huntingtin interacting 97.0 0.002 4.3E-08 54.8 6.6 69 98-166 123-191 (472)
280 COG2909 MalT ATP-dependent tra 97.0 0.4 8.6E-06 47.4 32.1 300 91-405 347-680 (894)
281 PF10345 Cohesin_load: Cohesin 97.0 0.4 8.6E-06 47.3 36.8 145 73-218 37-205 (608)
282 PF14561 TPR_20: Tetratricopep 97.0 0.015 3.3E-07 40.8 9.9 64 77-140 8-73 (90)
283 PF10345 Cohesin_load: Cohesin 97.0 0.44 9.5E-06 47.0 36.0 26 339-364 403-428 (608)
284 KOG2041 WD40 repeat protein [G 97.0 0.069 1.5E-06 50.9 16.4 189 141-365 679-877 (1189)
285 KOG1308 Hsp70-interacting prot 96.9 0.0011 2.4E-08 57.2 4.3 119 136-254 125-244 (377)
286 PF13174 TPR_6: Tetratricopept 96.9 0.002 4.3E-08 35.5 4.0 32 93-124 2-33 (33)
287 PF14561 TPR_20: Tetratricopep 96.9 0.018 3.9E-07 40.4 9.6 74 111-184 8-83 (90)
288 KOG0890 Protein kinase of the 96.9 0.98 2.1E-05 49.6 25.8 60 337-408 1667-1726(2382)
289 PF08311 Mad3_BUB1_I: Mad3/BUB 96.9 0.038 8.3E-07 41.7 11.9 43 210-252 81-126 (126)
290 KOG2422 Uncharacterized conser 96.9 0.19 4.2E-06 46.9 18.1 46 73-118 254-311 (665)
291 KOG2422 Uncharacterized conser 96.9 0.23 4.9E-06 46.5 18.5 153 105-257 252-451 (665)
292 PF09613 HrpB1_HrpK: Bacterial 96.8 0.12 2.7E-06 40.1 14.1 84 92-175 11-94 (160)
293 KOG1550 Extracellular protein 96.8 0.58 1.3E-05 45.4 26.5 282 74-373 229-542 (552)
294 PF13176 TPR_7: Tetratricopept 96.8 0.003 6.5E-08 35.7 4.0 25 94-118 2-26 (36)
295 PF13174 TPR_6: Tetratricopept 96.8 0.0029 6.2E-08 34.8 3.8 33 341-373 1-33 (33)
296 PF08631 SPO22: Meiosis protei 96.7 0.35 7.5E-06 42.4 28.1 240 102-368 4-274 (278)
297 smart00777 Mad3_BUB1_I Mad3/BU 96.7 0.047 1E-06 40.8 11.0 114 281-408 4-123 (125)
298 smart00386 HAT HAT (Half-A-TPR 96.7 0.0039 8.4E-08 34.2 4.1 29 106-134 2-30 (33)
299 PF13176 TPR_7: Tetratricopept 96.6 0.0035 7.6E-08 35.4 3.6 28 342-369 1-28 (36)
300 KOG3824 Huntingtin interacting 96.5 0.004 8.6E-08 53.0 4.8 63 71-133 130-192 (472)
301 KOG0551 Hsp90 co-chaperone CNS 96.5 0.036 7.7E-07 48.0 10.3 96 265-368 84-181 (390)
302 smart00386 HAT HAT (Half-A-TPR 96.4 0.0072 1.6E-07 33.0 4.1 31 354-393 1-31 (33)
303 KOG0551 Hsp90 co-chaperone CNS 96.4 0.048 1E-06 47.2 10.6 101 91-191 81-185 (390)
304 PRK10941 hypothetical protein; 96.4 0.056 1.2E-06 46.6 11.2 68 96-163 186-253 (269)
305 PF10602 RPN7: 26S proteasome 96.4 0.13 2.9E-06 41.4 12.6 102 192-293 36-144 (177)
306 PF09986 DUF2225: Uncharacteri 96.3 0.16 3.4E-06 42.4 13.1 99 275-374 90-199 (214)
307 PF04781 DUF627: Protein of un 96.2 0.071 1.5E-06 38.5 8.9 104 97-221 2-107 (111)
308 KOG1538 Uncharacterized conser 96.2 0.8 1.7E-05 43.7 17.7 26 341-366 805-830 (1081)
309 COG4976 Predicted methyltransf 96.1 0.0085 1.8E-07 48.9 4.4 61 99-159 3-63 (287)
310 KOG4507 Uncharacterized conser 96.1 0.036 7.7E-07 51.7 8.6 89 204-295 619-709 (886)
311 PF10602 RPN7: 26S proteasome 96.1 0.16 3.4E-06 41.0 11.5 96 160-255 37-143 (177)
312 smart00028 TPR Tetratricopepti 96.0 0.016 3.4E-07 31.1 4.1 31 93-123 3-33 (34)
313 KOG2066 Vacuolar assembly/sort 96.0 1.8 3.9E-05 42.4 23.8 69 71-142 370-440 (846)
314 TIGR02561 HrpB1_HrpK type III 96.0 0.52 1.1E-05 36.1 13.0 107 95-219 14-120 (153)
315 smart00028 TPR Tetratricopepti 96.0 0.015 3.1E-07 31.3 3.8 32 341-372 2-33 (34)
316 KOG3807 Predicted membrane pro 96.0 1 2.2E-05 39.4 17.0 109 103-223 196-306 (556)
317 PF02184 HAT: HAT (Half-A-TPR) 95.9 0.015 3.3E-07 31.2 3.4 25 176-200 4-28 (32)
318 KOG1550 Extracellular protein 95.8 2 4.4E-05 41.7 25.7 245 72-338 264-541 (552)
319 smart00777 Mad3_BUB1_I Mad3/BU 95.8 0.2 4.3E-06 37.5 10.0 102 77-184 5-124 (125)
320 PF02184 HAT: HAT (Half-A-TPR) 95.8 0.026 5.6E-07 30.4 3.8 29 207-235 2-30 (32)
321 PF04781 DUF627: Protein of un 95.6 0.28 6E-06 35.5 9.8 46 324-369 62-107 (111)
322 PRK10941 hypothetical protein; 95.4 0.28 6.1E-06 42.3 11.2 59 166-224 188-247 (269)
323 COG1747 Uncharacterized N-term 95.4 2.3 4.9E-05 39.7 22.5 182 85-274 60-251 (711)
324 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.13 2.8E-06 31.8 6.6 37 93-129 3-39 (53)
325 COG4976 Predicted methyltransf 95.2 0.032 6.9E-07 45.7 4.3 60 132-191 2-61 (287)
326 PF09986 DUF2225: Uncharacteri 95.0 0.58 1.2E-05 39.0 11.5 38 104-141 90-134 (214)
327 COG3629 DnrI DNA-binding trans 94.9 0.16 3.5E-06 43.8 8.1 63 125-187 153-215 (280)
328 PF04053 Coatomer_WDAD: Coatom 94.8 2.6 5.7E-05 39.5 16.4 104 94-220 298-401 (443)
329 COG2909 MalT ATP-dependent tra 94.8 5 0.00011 40.2 28.6 266 125-406 347-640 (894)
330 PF09613 HrpB1_HrpK: Bacterial 94.8 1.5 3.3E-05 34.2 14.3 65 127-191 12-76 (160)
331 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.22 4.8E-06 30.8 6.0 36 341-376 2-37 (53)
332 COG1747 Uncharacterized N-term 94.6 4 8.7E-05 38.1 23.3 169 120-295 61-238 (711)
333 KOG3807 Predicted membrane pro 94.5 3.1 6.7E-05 36.5 18.7 148 129-288 188-337 (556)
334 KOG3364 Membrane protein invol 94.2 1.1 2.4E-05 33.7 9.9 73 222-296 29-105 (149)
335 COG3629 DnrI DNA-binding trans 94.2 0.7 1.5E-05 39.9 10.4 76 159-234 153-236 (280)
336 PF13041 PPR_2: PPR repeat fam 94.2 0.33 7.2E-06 29.5 6.4 27 194-220 5-31 (50)
337 KOG1538 Uncharacterized conser 94.1 1.6 3.5E-05 41.7 13.1 53 231-289 779-831 (1081)
338 PRK15180 Vi polysaccharide bio 93.8 1 2.2E-05 41.4 10.9 120 104-223 302-422 (831)
339 COG0790 FOG: TPR repeat, SEL1 93.7 4.6 9.9E-05 35.6 22.4 77 75-155 59-143 (292)
340 PF04053 Coatomer_WDAD: Coatom 93.6 5 0.00011 37.7 15.7 157 99-287 269-427 (443)
341 KOG3364 Membrane protein invol 93.6 2.1 4.6E-05 32.2 10.5 75 299-378 33-109 (149)
342 PF11207 DUF2989: Protein of u 93.6 0.55 1.2E-05 38.1 8.1 56 225-281 141-197 (203)
343 KOG1310 WD40 repeat protein [G 93.6 0.34 7.4E-06 44.9 7.6 84 75-158 392-478 (758)
344 TIGR02561 HrpB1_HrpK type III 93.5 2.7 5.9E-05 32.3 11.5 93 75-186 28-120 (153)
345 COG3914 Spy Predicted O-linked 93.2 2.9 6.4E-05 39.6 13.0 116 76-191 50-174 (620)
346 PF13041 PPR_2: PPR repeat fam 93.1 0.5 1.1E-05 28.7 5.9 31 224-254 2-32 (50)
347 PRK15180 Vi polysaccharide bio 93.1 0.84 1.8E-05 42.0 9.3 117 75-191 307-423 (831)
348 PF13374 TPR_10: Tetratricopep 92.8 0.31 6.6E-06 28.1 4.5 29 341-369 3-31 (42)
349 KOG1310 WD40 repeat protein [G 92.8 0.43 9.3E-06 44.3 7.1 87 105-191 388-477 (758)
350 PF11207 DUF2989: Protein of u 92.6 1.7 3.7E-05 35.4 9.5 76 168-245 115-198 (203)
351 PF13374 TPR_10: Tetratricopep 92.6 0.3 6.6E-06 28.1 4.2 27 93-119 4-30 (42)
352 smart00299 CLH Clathrin heavy 92.3 4.1 8.9E-05 31.2 13.2 40 99-138 15-54 (140)
353 PF07720 TPR_3: Tetratricopept 92.2 0.53 1.1E-05 26.4 4.5 30 93-122 3-34 (36)
354 PF14929 TAF1_subA: TAF RNA Po 92.1 12 0.00025 36.1 18.1 142 106-251 273-438 (547)
355 KOG3783 Uncharacterized conser 92.1 11 0.00023 35.6 20.5 64 301-372 452-523 (546)
356 COG2912 Uncharacterized conser 92.0 1.5 3.3E-05 37.4 9.0 58 134-191 190-247 (269)
357 COG4649 Uncharacterized protei 91.9 5.4 0.00012 31.7 14.3 118 171-290 70-195 (221)
358 PF04190 DUF410: Protein of un 91.7 8.3 0.00018 33.4 21.9 78 271-353 150-241 (260)
359 PRK13184 pknD serine/threonine 91.6 18 0.0004 37.4 30.2 91 70-161 488-588 (932)
360 PF12862 Apc5: Anaphase-promot 91.5 0.99 2.2E-05 32.0 6.5 57 236-292 9-71 (94)
361 COG3947 Response regulator con 91.4 0.97 2.1E-05 38.8 7.1 59 128-186 282-340 (361)
362 KOG1839 Uncharacterized protei 91.3 3.2 6.9E-05 43.2 11.9 69 85-153 967-1043(1236)
363 PF07079 DUF1347: Protein of u 91.2 12 0.00027 34.6 31.2 83 72-154 56-157 (549)
364 COG0790 FOG: TPR repeat, SEL1 91.2 10 0.00022 33.4 22.7 178 103-291 53-266 (292)
365 PF12854 PPR_1: PPR repeat 91.1 0.61 1.3E-05 25.7 4.0 28 223-250 5-32 (34)
366 KOG1839 Uncharacterized protei 91.1 4.9 0.00011 42.0 12.9 101 120-220 968-1085(1236)
367 COG3947 Response regulator con 90.9 1.2 2.6E-05 38.2 7.2 61 160-220 280-341 (361)
368 PF12854 PPR_1: PPR repeat 90.8 0.76 1.6E-05 25.3 4.2 28 338-365 5-32 (34)
369 PF07720 TPR_3: Tetratricopept 90.6 1.2 2.6E-05 25.0 4.9 32 126-157 2-35 (36)
370 PF12862 Apc5: Anaphase-promot 90.4 2.4 5.3E-05 30.0 7.7 53 205-257 11-73 (94)
371 PF10579 Rapsyn_N: Rapsyn N-te 90.3 3.7 8.1E-05 27.7 7.7 53 235-287 16-68 (80)
372 PF07721 TPR_4: Tetratricopept 90.3 0.54 1.2E-05 24.0 3.1 23 93-115 3-25 (26)
373 COG4649 Uncharacterized protei 90.1 8.2 0.00018 30.7 15.9 116 138-253 71-195 (221)
374 KOG4521 Nuclear pore complex, 90.0 27 0.00058 36.5 16.5 159 129-293 924-1134(1480)
375 PF07721 TPR_4: Tetratricopept 89.9 0.53 1.2E-05 24.0 2.9 25 341-365 2-26 (26)
376 KOG2581 26S proteasome regulat 89.8 15 0.00033 33.4 15.7 129 200-338 134-279 (493)
377 KOG3783 Uncharacterized conser 89.2 20 0.00044 33.9 24.7 80 142-223 250-334 (546)
378 PF00244 14-3-3: 14-3-3 protei 88.7 14 0.0003 31.4 16.1 45 356-406 142-191 (236)
379 PF10516 SHNi-TPR: SHNi-TPR; 88.7 1.2 2.5E-05 25.4 3.9 28 127-154 3-30 (38)
380 COG2912 Uncharacterized conser 88.4 5.2 0.00011 34.3 9.3 60 167-226 189-249 (269)
381 smart00299 CLH Clathrin heavy 88.3 9.7 0.00021 29.1 15.0 34 138-171 20-53 (140)
382 PF10516 SHNi-TPR: SHNi-TPR; 88.3 1.2 2.6E-05 25.3 3.7 29 92-120 2-30 (38)
383 TIGR02996 rpt_mate_G_obs repea 88.2 2 4.3E-05 24.8 4.5 32 79-110 4-35 (42)
384 KOG0276 Vesicle coat complex C 87.9 13 0.00028 35.7 12.1 48 134-186 646-693 (794)
385 PF15015 NYD-SP12_N: Spermatog 87.7 11 0.00024 34.5 11.0 84 132-215 183-285 (569)
386 KOG0687 26S proteasome regulat 87.6 19 0.00041 31.8 12.1 27 160-186 105-131 (393)
387 TIGR03504 FimV_Cterm FimV C-te 87.6 2.7 5.9E-05 24.8 5.1 23 230-252 4-26 (44)
388 COG4941 Predicted RNA polymera 87.3 21 0.00045 31.7 17.3 120 175-295 272-398 (415)
389 COG4455 ImpE Protein of avirul 87.2 7.5 0.00016 32.2 9.0 56 136-191 12-67 (273)
390 PRK11619 lytic murein transgly 86.8 36 0.00077 34.0 31.7 121 237-368 253-374 (644)
391 TIGR03504 FimV_Cterm FimV C-te 86.5 1.7 3.7E-05 25.6 3.8 25 95-119 3-27 (44)
392 PF10373 EST1_DNA_bind: Est1 D 86.4 3.3 7.1E-05 36.1 7.5 62 110-171 1-62 (278)
393 PF09797 NatB_MDM20: N-acetylt 86.1 5.9 0.00013 36.3 9.2 45 107-151 199-243 (365)
394 COG3914 Spy Predicted O-linked 85.9 34 0.00074 32.9 16.5 118 107-224 47-174 (620)
395 COG4941 Predicted RNA polymera 85.6 25 0.00055 31.2 18.3 151 108-258 213-398 (415)
396 PF01535 PPR: PPR repeat; Int 85.5 1.6 3.4E-05 22.9 3.3 25 94-118 3-27 (31)
397 KOG4814 Uncharacterized conser 84.8 23 0.00049 34.4 12.1 88 202-292 364-458 (872)
398 PF12968 DUF3856: Domain of Un 84.5 14 0.00031 27.3 12.7 23 232-254 107-129 (144)
399 PF11846 DUF3366: Domain of un 84.3 5.3 0.00011 32.7 7.3 50 208-257 127-176 (193)
400 PF01535 PPR: PPR repeat; Int 83.9 2.1 4.5E-05 22.4 3.3 26 128-153 3-28 (31)
401 PF15015 NYD-SP12_N: Spermatog 83.6 8.4 0.00018 35.2 8.4 88 98-185 183-288 (569)
402 PF10579 Rapsyn_N: Rapsyn N-te 83.3 8.8 0.00019 25.9 6.5 44 103-146 18-64 (80)
403 PF12739 TRAPPC-Trs85: ER-Golg 83.0 41 0.00089 31.5 14.8 154 127-295 210-403 (414)
404 KOG4279 Serine/threonine prote 82.8 12 0.00026 36.8 9.6 115 124-239 200-334 (1226)
405 KOG0276 Vesicle coat complex C 82.4 19 0.00041 34.7 10.5 69 76-153 626-694 (794)
406 COG4455 ImpE Protein of avirul 82.3 28 0.0006 29.0 12.7 59 100-158 10-68 (273)
407 PF10373 EST1_DNA_bind: Est1 D 82.1 8.3 0.00018 33.6 8.2 62 76-137 1-62 (278)
408 KOG2062 26S proteasome regulat 82.0 41 0.00088 33.4 12.7 161 87-253 55-238 (929)
409 PF11846 DUF3366: Domain of un 81.7 13 0.00028 30.4 8.6 51 322-373 127-177 (193)
410 PF09670 Cas_Cas02710: CRISPR- 81.5 44 0.00096 30.8 14.0 59 130-188 136-198 (379)
411 PF10255 Paf67: RNA polymerase 81.2 20 0.00042 33.1 10.1 62 93-154 124-193 (404)
412 PF15297 CKAP2_C: Cytoskeleton 81.1 13 0.00027 33.2 8.5 61 141-201 119-184 (353)
413 PF00244 14-3-3: 14-3-3 protei 80.9 34 0.00074 29.1 19.7 47 322-368 142-197 (236)
414 PF14929 TAF1_subA: TAF RNA Po 80.6 58 0.0013 31.6 17.2 142 142-289 275-439 (547)
415 TIGR00756 PPR pentatricopeptid 80.4 4.2 9.1E-05 21.8 3.8 25 94-118 3-27 (35)
416 PF13226 DUF4034: Domain of un 80.2 39 0.00085 29.4 11.1 224 98-363 7-254 (277)
417 PF11817 Foie-gras_1: Foie gra 80.2 18 0.00039 31.0 9.3 59 192-250 178-243 (247)
418 PF13812 PPR_3: Pentatricopept 79.4 5.5 0.00012 21.3 4.1 26 93-118 3-28 (34)
419 KOG1463 26S proteasome regulat 79.2 47 0.001 29.7 22.8 171 196-372 132-319 (411)
420 TIGR00756 PPR pentatricopeptid 78.8 5 0.00011 21.4 3.8 28 342-369 2-29 (35)
421 TIGR02996 rpt_mate_G_obs repea 78.2 7.4 0.00016 22.6 4.1 32 328-359 4-35 (42)
422 KOG2114 Vacuolar assembly/sort 77.9 83 0.0018 31.9 19.3 36 271-310 499-534 (933)
423 PF11817 Foie-gras_1: Foie gra 77.9 25 0.00053 30.2 9.4 81 207-287 153-243 (247)
424 COG5187 RPN7 26S proteasome re 77.1 50 0.0011 28.8 13.9 99 192-290 115-220 (412)
425 KOG1920 IkappaB kinase complex 76.5 1.1E+02 0.0024 32.4 19.3 17 166-182 915-931 (1265)
426 KOG0529 Protein geranylgeranyl 76.4 63 0.0014 29.7 14.3 129 75-203 47-194 (421)
427 PF15297 CKAP2_C: Cytoskeleton 76.0 15 0.00033 32.7 7.5 62 175-236 119-186 (353)
428 PRK12798 chemotaxis protein; R 75.9 66 0.0014 29.7 22.7 198 87-293 80-288 (421)
429 PF03745 DUF309: Domain of unk 75.2 19 0.00041 23.1 7.3 58 346-407 5-62 (62)
430 PF09670 Cas_Cas02710: CRISPR- 74.9 70 0.0015 29.5 12.9 59 96-154 136-198 (379)
431 PF04190 DUF410: Protein of un 73.7 59 0.0013 28.1 18.8 80 260-369 88-170 (260)
432 PF13812 PPR_3: Pentatricopept 73.7 10 0.00022 20.1 4.2 26 128-153 4-29 (34)
433 PF12968 DUF3856: Domain of Un 73.6 34 0.00075 25.4 13.1 95 274-369 21-129 (144)
434 PF13226 DUF4034: Domain of un 73.4 40 0.00087 29.4 9.4 89 109-210 61-151 (277)
435 COG5159 RPN6 26S proteasome re 73.0 64 0.0014 28.1 21.9 187 71-257 17-238 (421)
436 cd02680 MIT_calpain7_2 MIT: do 72.4 7.7 0.00017 26.0 3.8 17 205-221 19-35 (75)
437 KOG2114 Vacuolar assembly/sort 72.3 1.2E+02 0.0025 30.9 13.1 55 234-291 343-397 (933)
438 PF12739 TRAPPC-Trs85: ER-Golg 71.9 88 0.0019 29.3 14.6 27 346-372 376-402 (414)
439 PF14863 Alkyl_sulf_dimr: Alky 71.8 17 0.00038 27.9 6.2 39 135-173 80-118 (141)
440 PRK13184 pknD serine/threonine 70.7 1.4E+02 0.0031 31.2 25.4 85 72-157 534-623 (932)
441 KOG2581 26S proteasome regulat 69.7 93 0.002 28.7 19.3 125 100-224 135-279 (493)
442 KOG0686 COP9 signalosome, subu 69.6 93 0.002 28.7 14.1 60 161-220 152-215 (466)
443 KOG0529 Protein geranylgeranyl 69.6 93 0.002 28.7 16.8 57 281-345 94-150 (421)
444 KOG4279 Serine/threonine prote 69.6 36 0.00078 33.8 8.9 167 90-257 200-398 (1226)
445 PF10255 Paf67: RNA polymerase 68.7 1E+02 0.0022 28.7 11.6 128 162-289 125-268 (404)
446 PRK12798 chemotaxis protein; R 66.5 1.1E+02 0.0024 28.3 24.4 230 120-365 79-320 (421)
447 KOG0687 26S proteasome regulat 66.3 97 0.0021 27.6 16.0 110 261-372 103-213 (393)
448 PF14863 Alkyl_sulf_dimr: Alky 65.3 33 0.00072 26.4 6.5 50 90-139 69-118 (141)
449 KOG4814 Uncharacterized conser 65.1 1.5E+02 0.0032 29.3 22.2 94 126-220 356-456 (872)
450 KOG1114 Tripeptidyl peptidase 64.5 1.8E+02 0.004 30.2 14.3 69 209-278 1213-1283(1304)
451 PRK15490 Vi polysaccharide bio 64.3 38 0.00081 32.9 8.0 72 76-149 27-98 (578)
452 KOG0686 COP9 signalosome, subu 64.3 1.2E+02 0.0026 28.0 19.8 161 193-365 151-329 (466)
453 cd02680 MIT_calpain7_2 MIT: do 64.1 18 0.00039 24.3 4.2 17 138-154 19-35 (75)
454 KOG0292 Vesicle coat complex C 63.6 31 0.00067 34.9 7.3 47 102-153 654-700 (1202)
455 cd00280 TRFH Telomeric Repeat 62.8 81 0.0018 25.5 8.9 66 107-173 85-158 (200)
456 COG5536 BET4 Protein prenyltra 61.3 81 0.0018 27.4 8.5 92 74-165 91-190 (328)
457 PHA02537 M terminase endonucle 60.9 18 0.00039 30.5 4.7 20 206-225 192-211 (230)
458 PRK15490 Vi polysaccharide bio 60.4 58 0.0012 31.7 8.5 78 104-183 21-98 (578)
459 KOG0889 Histone acetyltransfer 60.0 3.9E+02 0.0085 32.5 21.8 292 66-371 2606-2921(3550)
460 COG5187 RPN7 26S proteasome re 58.8 1.3E+02 0.0028 26.5 15.7 100 125-224 115-224 (412)
461 PF04348 LppC: LppC putative l 58.3 3.3 7.1E-05 40.1 0.0 51 166-216 31-85 (536)
462 cd00280 TRFH Telomeric Repeat 57.5 1E+02 0.0022 25.0 8.8 68 74-142 86-161 (200)
463 PF12583 TPPII_N: Tripeptidyl 57.4 51 0.0011 24.9 5.9 34 104-137 89-122 (139)
464 KOG4014 Uncharacterized conser 56.4 1.1E+02 0.0023 24.9 14.1 99 90-191 33-144 (248)
465 TIGR03362 VI_chp_7 type VI sec 56.3 1.5E+02 0.0032 26.4 16.2 158 125-291 100-279 (301)
466 KOG4521 Nuclear pore complex, 55.9 2.9E+02 0.0062 29.6 18.7 139 228-370 986-1133(1480)
467 KOG1463 26S proteasome regulat 55.5 1.6E+02 0.0034 26.6 21.5 256 74-337 21-318 (411)
468 PF12921 ATP13: Mitochondrial 54.6 90 0.002 23.5 10.4 51 223-274 50-100 (126)
469 PF07079 DUF1347: Protein of u 54.5 1.9E+02 0.0042 27.2 26.9 127 96-222 11-158 (549)
470 PF02064 MAS20: MAS20 protein 53.6 43 0.00093 25.0 5.2 28 130-157 68-95 (121)
471 KOG4014 Uncharacterized conser 52.2 1.3E+02 0.0028 24.5 15.9 46 322-369 184-233 (248)
472 cd02681 MIT_calpain7_1 MIT: do 51.5 30 0.00065 23.3 3.7 16 205-220 19-34 (76)
473 cd02677 MIT_SNX15 MIT: domain 50.8 25 0.00053 23.7 3.3 15 105-119 20-34 (75)
474 cd02682 MIT_AAA_Arch MIT: doma 50.6 75 0.0016 21.4 7.0 38 356-393 29-66 (75)
475 cd02684 MIT_2 MIT: domain cont 50.0 29 0.00063 23.3 3.5 14 206-219 20-33 (75)
476 PF04097 Nic96: Nup93/Nic96; 49.8 2.8E+02 0.006 27.7 16.0 32 343-375 506-539 (613)
477 PF04840 Vps16_C: Vps16, C-ter 49.3 2E+02 0.0043 25.9 19.6 230 77-341 71-306 (319)
478 KOG1920 IkappaB kinase complex 49.2 3.7E+02 0.0079 28.9 22.6 24 227-250 941-964 (1265)
479 KOG4318 Bicoid mRNA stability 48.6 2.8E+02 0.006 28.8 11.0 112 198-311 713-827 (1088)
480 cd02679 MIT_spastin MIT: domai 46.0 42 0.0009 22.8 3.8 15 206-220 22-36 (79)
481 PF09205 DUF1955: Domain of un 45.8 1.4E+02 0.0029 22.9 15.4 81 275-369 69-149 (161)
482 PF02064 MAS20: MAS20 protein 44.4 60 0.0013 24.2 4.7 32 95-126 67-98 (121)
483 PF12753 Nro1: Nuclear pore co 43.3 52 0.0011 30.1 5.0 18 122-139 347-364 (404)
484 PF12753 Nro1: Nuclear pore co 41.3 46 0.00099 30.5 4.3 32 322-355 334-365 (404)
485 cd02678 MIT_VPS4 MIT: domain c 41.1 55 0.0012 21.9 3.9 13 206-218 20-32 (75)
486 PRK11619 lytic murein transgly 41.1 3.9E+02 0.0084 26.9 31.7 80 208-290 295-374 (644)
487 PF04090 RNA_pol_I_TF: RNA pol 41.0 2.1E+02 0.0044 23.7 12.2 65 92-156 42-107 (199)
488 KOG2063 Vacuolar assembly/sort 40.9 4.4E+02 0.0096 27.5 17.2 194 128-351 507-743 (877)
489 PF01239 PPTA: Protein prenylt 40.9 56 0.0012 17.1 4.6 27 326-352 3-29 (31)
490 PF04097 Nic96: Nup93/Nic96; 40.9 3.8E+02 0.0083 26.7 17.7 92 195-290 261-355 (613)
491 PF04762 IKI3: IKI3 family; I 40.3 4.2E+02 0.0091 28.1 11.6 131 140-287 793-926 (928)
492 smart00101 14_3_3 14-3-3 homol 39.8 2.4E+02 0.0053 24.2 18.7 45 356-406 144-193 (244)
493 TIGR03362 VI_chp_7 type VI sec 39.7 2.7E+02 0.0059 24.7 15.7 156 92-256 101-281 (301)
494 smart00101 14_3_3 14-3-3 homol 39.3 2.5E+02 0.0054 24.1 18.8 50 241-290 144-199 (244)
495 KOG1811 Predicted Zn2+-binding 37.1 4.2E+02 0.0091 26.1 11.5 67 157-223 585-655 (1141)
496 PF04212 MIT: MIT (microtubule 37.0 84 0.0018 20.4 4.2 17 352-368 17-33 (69)
497 PF10938 YfdX: YfdX protein; 36.4 2.1E+02 0.0046 22.5 7.3 59 196-254 79-146 (155)
498 PF07219 HemY_N: HemY protein 35.7 1.7E+02 0.0037 21.2 6.0 42 132-173 66-107 (108)
499 PF08771 Rapamycin_bind: Rapam 34.9 1.5E+02 0.0033 21.2 5.5 71 234-310 23-96 (100)
500 KOG1811 Predicted Zn2+-binding 34.6 4.6E+02 0.01 25.8 11.2 126 165-294 523-656 (1141)
No 1
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.8e-51 Score=350.71 Aligned_cols=387 Identities=80% Similarity=1.295 Sum_probs=377.3
Q ss_pred cCCCccccccCCCCcccCCHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015351 22 KLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWE 101 (408)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 101 (408)
..|+...|+|++|+++||+++|+|++|.+++....+++.+.|.+.+++.+|..+-++.|+..|..+.-+...|..||.+.
T Consensus 4 ~~p~~~~vknktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwE 83 (677)
T KOG1915|consen 4 KLPKAAKVKNKTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWE 83 (677)
T ss_pred CCcchhhccCCCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHH
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI 181 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 181 (408)
.+++++..|+.+|++||..+..+..+|+.|+.+.+++.++..|+.++.+|+.+-|....+|+.+..+....|+...|+++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH
Q 015351 182 FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261 (408)
Q Consensus 182 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 261 (408)
|++-+...|+..+|..++.+..+.+.++.|+.+|++.+-..|+...|+.++.+..+.|+..-|+.+|++|++...++...
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHH
Q 015351 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD 341 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 341 (408)
..++...|.+...++.+++|+.+|+-|+...|.+....++..+..++.+.|+...+++.++.+.+-.|++.+..+|.|.+
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 88999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 342 IWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 342 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
.|+.+..+....|+.+..+++|++|+...|...+...|+.||++|++|+.|+|+...|.+.++++|+
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-38 Score=277.96 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
...|..+|.++++..|...-+|..+|-.+..+|++-.|+..|++|++++|+..++++.+|.++...+.+++|+.+|.+|+
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 34455556666666665555666666665556666666666666666666666666666666666666666666666666
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHH
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIK 230 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 230 (408)
...|++..++-+++-+|..+|..+-|+..|++++...|+ ++++.++++.+...|+..+|..+|.+++..+|+ .+...+
T Consensus 280 ~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 280 NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 666665555555555566666666666666666666666 566666666666666666666666666666653 455566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 310 (408)
+|.++.++|.+++|..+|.++++.+|+ ....+.+++.+|.++|++++|+.+|+.++.+.|.- ...+..++..+..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~---~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f--Ada~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPE---FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF--ADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChh---hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH--HHHHHhcchHHHH
Confidence 666666666666666666666666655 55566666666666666666666666666665553 5555566666666
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 311 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
.|+ ++.|+..|.+|+..+|...++..+++.+|...|+..+|+..|+.|+++.|+.++
T Consensus 435 ~g~--------v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 435 MGD--------VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred hhh--------HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 565 444666666666666666666666666666666666666666666666666554
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-37 Score=273.01 Aligned_cols=336 Identities=16% Similarity=0.136 Sum_probs=306.6
Q ss_pred HHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 015351 41 AEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV 120 (408)
Q Consensus 41 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (408)
+....+.+++..|+....+..+...+.. ++..+.|-.+|..+|+.+|....+...+|.+....|++++|..+|.+|++.
T Consensus 135 al~~y~~aiel~p~fida~inla~al~~-~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~ 213 (966)
T KOG4626|consen 135 ALALYRAAIELKPKFIDAYINLAAALVT-QGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET 213 (966)
T ss_pred HHHHHHHHHhcCchhhHHHhhHHHHHHh-cCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence 4456677888887665544444443333 334466999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYI 199 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~ 199 (408)
+|...-+|..+|-++..+|++..|++.|++|++++|+...+|+++|.+|...+.++.|+.+|.+|+...|+ ..++-+++
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla 293 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLA 293 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q 015351 200 KFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET 278 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 278 (408)
.+|..+|.++-|+..|+++++..|+ ++++.++|..+...|+..+|..+|.+++...|. .++...++|.++.+.|.+
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLGNIYREQGKI 370 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999997 788999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 015351 279 ERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKER 358 (408)
Q Consensus 279 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 358 (408)
+.|..+|.+++...|.- ......++.++.++|+ +++|+..|+.++++.|.-.+++.++|..|...|+.+.
T Consensus 371 e~A~~ly~~al~v~p~~--aaa~nNLa~i~kqqgn--------l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEF--AAAHNNLASIYKQQGN--------LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred hHHHHHHHHHHhhChhh--hhhhhhHHHHHHhccc--------HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999985 7889999999999999 6779999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCCh
Q 015351 359 AREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDM 400 (408)
Q Consensus 359 A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~ 400 (408)
|+.+|.+||..+|.-.+ ..-++|.++ ...|++
T Consensus 441 A~q~y~rAI~~nPt~Ae---------AhsNLasi~-kDsGni 472 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAE---------AHSNLASIY-KDSGNI 472 (966)
T ss_pred HHHHHHHHHhcCcHHHH---------HHhhHHHHh-hccCCc
Confidence 99999999999998665 455666666 366664
No 4
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.5e-36 Score=256.69 Aligned_cols=371 Identities=28% Similarity=0.505 Sum_probs=298.8
Q ss_pred cccCCCCcccCCHHHHHHHHHHhchhcCC----------CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 015351 29 VKNKTPAPIQITAEQILREARERQEAEIR----------PPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYA 98 (408)
Q Consensus 29 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 98 (408)
....+|.+..|++...|++...+-.+.+. .++.+..+|++..+.+++|+++|++||..+..+..+|+.|+
T Consensus 35 ~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYa 114 (677)
T KOG1915|consen 35 LAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYA 114 (677)
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 45556666789999999888766655442 13334557888888889999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHH
Q 015351 99 KWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 178 (408)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A 178 (408)
.+.+++..+..|+.++++|+..-|.-..+|+.+..+....|++..|+++|++-+...|+ ..+|..++.+..+.+..+.|
T Consensus 115 e~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeiera 193 (677)
T KOG1915|consen 115 EFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERA 193 (677)
T ss_pred HHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 78999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 179 RQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
+++|++.+-.+|+...|+.++.+..++|+...|+.+|++|++...+ ..+++.+|.+...+..++.|+.+|+-|+..
T Consensus 194 R~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 194 RSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999886643 345666777777777777777777766666
Q ss_pred cCCcHH-----------------------------------------HHHHHHHHHHHHH--------------------
Q 015351 255 LADDEE-----------------------------------------AEQLFVAFAEFEE-------------------- 273 (408)
Q Consensus 255 ~p~~~~-----------------------------------------~~~~~~~~~~~~~-------------------- 273 (408)
.|.+.. +.+.|+.+..+..
T Consensus 274 ~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 274 IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 655311 1223333333333
Q ss_pred ------------------------HcCChHHHHHHHHHHHhhCCCcc--hHHHHHHHHHHHHHcCCchhHHHHH------
Q 015351 274 ------------------------RCKETERARCIYKFALDHIPKGR--AEDLYRKFVAFEKQYGDREGIEDAI------ 321 (408)
Q Consensus 274 ------------------------~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~g~~~~~~~~~------ 321 (408)
...+.++++.+|+.++++.|... +..+|..++.++..+.+...+++.+
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 34455555555555555555532 4678888888888776665554331
Q ss_pred -------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 015351 322 -------------------VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRY 382 (408)
Q Consensus 322 -------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~ 382 (408)
++..+.+|++-|+-.|.+..+|..+|.+....|+.+.|+.+|+-|++...-+....+|++
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka- 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA- 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH-
Confidence 888999999999999999999999999999999999999999999987666666566555
Q ss_pred HHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 383 IYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 383 ~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
|.+|+ +..|.+++|+.+|+
T Consensus 513 ------YIdFE-i~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 513 ------YIDFE-IEEGEFEKARALYE 531 (677)
T ss_pred ------hhhhh-hhcchHHHHHHHHH
Confidence 55555 68899999998874
No 5
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=7.3e-34 Score=253.71 Aligned_cols=366 Identities=22% Similarity=0.332 Sum_probs=305.1
Q ss_pred ccccccCCCCcccCCHHHHHHHHHHhchhcCCCCCCCCCCHH---------------------HHHHHHHHHHHHHHHHH
Q 015351 26 PTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDST---------------------ELADYRLRKRKEFEDLI 84 (408)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~A~~~~~~~l 84 (408)
.+.+.++..+++.++.+||+++|.+++..++...||.|.... +-.+..+-|+.+|..+|
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 456889999999999999999999999999988888543111 01123456889999999
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHH
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYK 164 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (408)
+.+|....+|...+.+....|..+.-..++++++...|....+|+.++.-....|+...|+.++.++++.+|++.++|+.
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHH
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~ 243 (408)
-..+.....+++.|+.+|.++....|...+|+..+.++.-+++.++|+.+++++++.+|+ ..+|+.+|+++.+.++.+.
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999996 6799999999999999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHH--
Q 015351 244 ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI-- 321 (408)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 321 (408)
|+..|...++.+|. .+.+|..++.+..+.|+.-+|+.+++++.-.+|.+ ..+|...+.++.+.|+.+.++.+.
T Consensus 704 aR~aY~~G~k~cP~---~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 704 AREAYLQGTKKCPN---SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHhccccCCC---CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999998 789999999999999966544321
Q ss_pred -----------HHHHHH---------HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 015351 322 -----------VGKRRF---------QYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQR 381 (408)
Q Consensus 322 -----------~~~A~~---------~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~ 381 (408)
+.+|+. .+..|+..+.+++.+.+..+.++....++++|++.|+||++.+|++++
T Consensus 779 ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD------ 852 (913)
T KOG0495|consen 779 ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD------ 852 (913)
T ss_pred HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch------
Confidence 111111 122344444445555555555556666677777777777777777775
Q ss_pred HHHHHHHHHHHhhhhcCChhHHhhh
Q 015351 382 YIYLWINYALYEELDAGDMERTRDV 406 (408)
Q Consensus 382 ~~~l~~~~a~~~e~~~g~~~~A~~~ 406 (408)
.|..|-.|+ ..+|.-+.-.++
T Consensus 853 ---~wa~fykfe-l~hG~eed~kev 873 (913)
T KOG0495|consen 853 ---AWAWFYKFE-LRHGTEEDQKEV 873 (913)
T ss_pred ---HHHHHHHHH-HHhCCHHHHHHH
Confidence 455455555 466654444433
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.6e-30 Score=251.08 Aligned_cols=314 Identities=11% Similarity=0.109 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.+++|+..|+++++..|+ +..|..+|.++...|++++|+..++++++.+|++..+|..+|.++...|++++|+..|..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred CCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4457799999999999985 678889999999999999999999999999999999999998888888887777654332
Q ss_pred --------------------------------------------------------------------------------
Q 015351 151 -------------------------------------------------------------------------------- 150 (408)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (408)
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence
Q ss_pred --------------------HHHh---CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhh
Q 015351 151 --------------------AVTL---LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYN 206 (408)
Q Consensus 151 --------------------al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~ 206 (408)
++.. .|....+|..+|.++...|++++|+..|+++++.+|. ...|..++.++...|
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC
Confidence 2222 2444456778888888899999999999999999998 888999999999999
Q ss_pred hHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 015351 207 EVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY 285 (408)
Q Consensus 207 ~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 285 (408)
++++|+..|+++++.+|+ ..++..+|.++...|++++|+..|+++++..|+ +...+..+|.++...|++++|+..|
T Consensus 380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~---~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD---FIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999884 788999999999999999999999999999988 7888999999999999999999999
Q ss_pred HHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHH------HHHH-HHHHHcCCHHH
Q 015351 286 KFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW------FDYI-RLEESVGNKER 358 (408)
Q Consensus 286 ~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~~~-~~~~~~g~~~~ 358 (408)
+++++..|.+ ..++..++.++...|+ +++|+..|++++..+|.+...+ ...+ .++...|++++
T Consensus 457 ~~al~~~P~~--~~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 457 RRCKKNFPEA--PDVYNYYGELLLDQNK--------FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHhCCCC--hHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 9999988887 6788888999998898 6679999999999998754332 2222 23344699999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 359 AREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 359 A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
|..++++++..+|++.. .+..+|.++ ...|++++|++.|+
T Consensus 527 A~~~~~kAl~l~p~~~~---------a~~~la~~~-~~~g~~~eAi~~~e 566 (615)
T TIGR00990 527 AENLCEKALIIDPECDI---------AVATMAQLL-LQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHHhcCCCcHH---------HHHHHHHHH-HHccCHHHHHHHHH
Confidence 99999999999988764 456677777 48999999998774
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=7.8e-31 Score=253.98 Aligned_cols=314 Identities=12% Similarity=0.041 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+..+.|+..++.++...|.++.++..++......|+++.|+..|++++..+|+++.+|..+|.++...|++++|+..|++
T Consensus 56 g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC--ChHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP--KVST 227 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~ 227 (408)
++..+|+++.+|..++.++...|++++|...+++++...|+ ...+...+ .+...|++++|+..+++++...| ....
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 99999999999999999999999999999999999999988 55555543 46778999999999999998875 2344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCCcchHHHHHH
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETER----ARCIYKFALDHIPKGRAEDLYRK 303 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~ 303 (408)
...++.++...|++++|...|++++...|+ ++.++..+|.++...|++++ |...|++++...|++ ..++..
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~--~~a~~~ 289 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLD---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN--VRIVTL 289 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC--HHHHHH
Confidence 556678888999999999999999999998 78999999999999999985 899999999999987 789999
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 015351 304 FVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383 (408)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~ 383 (408)
++.++...|+ +++|+..+++++..+|+++.++..++.++...|++++|+..|++++...|.+..
T Consensus 290 lg~~l~~~g~--------~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~-------- 353 (656)
T PRK15174 290 YADALIRTGQ--------NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK-------- 353 (656)
T ss_pred HHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH--------
Confidence 9999999999 667999999999999999999999999999999999999999999999988763
Q ss_pred HHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 384 YLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 384 ~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
.....+..+ ...|++++|++.|+
T Consensus 354 -~~~~~a~al-~~~G~~deA~~~l~ 376 (656)
T PRK15174 354 -WNRYAAAAL-LQAGKTSEAESVFE 376 (656)
T ss_pred -HHHHHHHHH-HHCCCHHHHHHHHH
Confidence 222334555 37899999998773
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.9e-31 Score=267.15 Aligned_cols=314 Identities=17% Similarity=0.152 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+..++|...+++++...|.++.+|..++.++...|++++|+..|+++++.+|.++..|..++.++...|++++|...|++
T Consensus 581 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 581 GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWI 229 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 229 (408)
++..+|++..+|..++.++...|++++|..+++++.+..|. ...+..++.++...|++++|+..|++++...|+...+.
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 740 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHH
Confidence 88888888888888888888888888888888888887777 77788888888899999999999999999988878888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH
Q 015351 230 KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEK 309 (408)
Q Consensus 230 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 309 (408)
.++.++...|++++|...++++++..|+ ++.++..++.++...|++++|..+|+++++..|++ +.++..++.++.
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~ 815 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPN---DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN--AVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999999999888 78899999999999999999999999999998887 678888888888
Q ss_pred HcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 015351 310 QYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINY 389 (408)
Q Consensus 310 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~ 389 (408)
..|+ . +|+..+++++...|+++.++..+|.++...|++++|..+|+++++..|.++. ++..+
T Consensus 816 ~~~~-~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~l 877 (899)
T TIGR02917 816 ELKD-P--------RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA---------IRYHL 877 (899)
T ss_pred hcCc-H--------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---------HHHHH
Confidence 8887 3 3899999999999999999999999999999999999999999999998775 56667
Q ss_pred HHHhhhhcCChhHHhhhcC
Q 015351 390 ALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 390 a~~~e~~~g~~~~A~~~~~ 408 (408)
+..+ ...|++++|+++|+
T Consensus 878 ~~~~-~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 878 ALAL-LATGRKAEARKELD 895 (899)
T ss_pred HHHH-HHcCCHHHHHHHHH
Confidence 7777 48999999998873
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=4.6e-29 Score=241.70 Aligned_cols=321 Identities=10% Similarity=-0.012 Sum_probs=283.7
Q ss_pred CHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015351 40 TAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119 (408)
Q Consensus 40 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (408)
.+...++..+...|.........+.... ..+..+.|...|++++..+|+++.+|..+|.++...|++++|+..|++++.
T Consensus 60 ~A~~l~~~~l~~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 60 VGLTLLSDRVLTAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred hhHHHhHHHHHhCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666444333332222 245567899999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--HHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQGWLS 197 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~ 197 (408)
.+|+++.+|..++.++...|++++|+..+++++...|+++.++..++. +...|++++|+..++++++..|. ...+..
T Consensus 139 l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 999999999999999999999999999999999999999888877654 78899999999999999998764 444555
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 015351 198 YIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDR----ARNVYERAVEKLADDEEAEQLFVAFAEFE 272 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 272 (408)
++.++...|++++|+..|++++...|+ ..++..+|.++...|++++ |...|+++++..|+ ++.++..+|.++
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l 294 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---NVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHH
Confidence 678888999999999999999999984 7789999999999999986 89999999999998 789999999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015351 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES 352 (408)
Q Consensus 273 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 352 (408)
...|++++|+..+++++...|.+ ..++..++.++...|+ +++|+..|++++..+|.++..+..++.++..
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~--~~a~~~La~~l~~~G~--------~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDL--PYVRAMYARALRQVGQ--------YTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 99999999999999999999997 6788889999999999 6679999999999999998877778999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchh
Q 015351 353 VGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 353 ~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
.|++++|+..|+++++..|++..
T Consensus 365 ~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 365 AGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred CCCHHHHHHHHHHHHHhChhhch
Confidence 99999999999999999998765
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.3e-29 Score=244.38 Aligned_cols=294 Identities=14% Similarity=0.120 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHH-----------------------------------
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWE----------------------------------- 115 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------------------------------- 115 (408)
+.+++|+..|+++++.+|++..+|..+|.++...|++++|+..|.
T Consensus 174 ~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~ 253 (615)
T TIGR00990 174 GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET 253 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445789999999999999999999999999999998887764332
Q ss_pred -----------------------------------------------------------------HHHhc---cCCChHH
Q 015351 116 -----------------------------------------------------------------RALEV---DYRNHTL 127 (408)
Q Consensus 116 -----------------------------------------------------------------~al~~---~p~~~~~ 127 (408)
+++.. .|....+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a 333 (615)
T TIGR00990 254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA 333 (615)
T ss_pred CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH
Confidence 22221 3555667
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhh
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYN 206 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~ 206 (408)
|..+|.++...|++++|+..|++++..+|++...|..+|.++...|++++|+..|+++++.+|+ +.+|..+|.++...|
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 8888999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 015351 207 EVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY 285 (408)
Q Consensus 207 ~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 285 (408)
++++|+..|+++++..|+ ...+..+|.++...|++++|+..|+++++..|. ++.++..+|.++...|++++|+..|
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999995 678999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHhhCCCcchH-----HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015351 286 KFALDHIPKGRAE-----DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAR 360 (408)
Q Consensus 286 ~~al~~~p~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 360 (408)
++++...|..... .++...+.++...|+ +++|...|++++..+|++..++..+|.++...|++++|+
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~--------~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQD--------FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 9999988864211 112222223333466 777999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchh
Q 015351 361 EVYERAIANVPPAEE 375 (408)
Q Consensus 361 ~~~~~al~~~p~~~~ 375 (408)
..|+++++..+...+
T Consensus 563 ~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 563 KLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhccHHH
Confidence 999999999887554
No 11
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=5.8e-29 Score=222.58 Aligned_cols=258 Identities=27% Similarity=0.457 Sum_probs=239.2
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015351 111 RSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP 190 (408)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 190 (408)
+.+|..+|+.+|....+|...+.+....|..+.-..+|++++...|..+.+|++++.-+...|+...|+.++.++++.+|
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 34677777777777888888888888888888888899999999999899999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 015351 191 D-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269 (408)
Q Consensus 191 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 269 (408)
+ .++|+.-..++....++++|+.+|.++....|+..+|+..+.+...+++.++|+.+++++++.+|+ ...+|+.+|
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~---f~Kl~lmlG 692 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD---FHKLWLMLG 692 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc---hHHHHHHHh
Confidence 9 899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015351 270 EFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRL 349 (408)
Q Consensus 270 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 349 (408)
+++.+.++.+.|+..|..+++.+|.. +.+|..++.++...|+ +.+|+.+++++.-.+|.++.+|+..+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~--ipLWllLakleEk~~~--------~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNS--IPLWLLLAKLEEKDGQ--------LVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCC--chHHHHHHHHHHHhcc--------hhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 99999999999999999999999998 7899999999999997 6689999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 015351 350 EESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383 (408)
Q Consensus 350 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~ 383 (408)
+.+.|+.++|...+.+|++.+|.++. +|..-|
T Consensus 763 ElR~gn~~~a~~lmakALQecp~sg~--LWaEaI 794 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQECPSSGL--LWAEAI 794 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccch--hHHHHH
Confidence 99999999999999999999999984 665544
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.6e-29 Score=258.04 Aligned_cols=315 Identities=14% Similarity=0.153 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHH--H------------HHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL--W------------LKYAEVEM 136 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~------------~~~a~~~~ 136 (408)
+.++.|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++... | ...+..+.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999987531 2 34477888
Q ss_pred hccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH-------------
Q 015351 137 KNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE------------- 202 (408)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~------------- 202 (408)
..|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++..|+ ..++..++.++
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 65655554443
Q ss_pred -----------------------------HHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015351 203 -----------------------------LRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAV 252 (408)
Q Consensus 203 -----------------------------~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al 252 (408)
...|++++|+..|+++++.+|+ +.++..++.++...|++++|...|++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677777777777777763 5566677777777777777777777777
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH----------------------------------------hhC
Q 015351 253 EKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL----------------------------------------DHI 292 (408)
Q Consensus 253 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----------------------------------------~~~ 292 (408)
+..|. ++..++.++.++...++.++|...++++. ...
T Consensus 523 ~~~P~---~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 523 QQKPN---DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred HcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77666 45555555555555555555555544321 122
Q ss_pred CCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 293 PKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 293 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
|.+ ..++..++.++...|+ +++|+..|++++..+|+++.++..++.++...|++++|+.+|+++++..|+
T Consensus 600 p~~--~~~~~~La~~~~~~g~--------~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 600 PPS--TRIDLTLADWAQQRGD--------YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred CCC--chHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 333 3345555666666666 667999999999999999999999999999999999999999999988888
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 373 AEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 373 ~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+.. ++..++..+ ...|++++|+++|+
T Consensus 670 ~~~---------~~~~la~~~-~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 670 SLN---------TQRRVALAW-AALGDTAAAQRTFN 695 (1157)
T ss_pred ChH---------HHHHHHHHH-HhCCCHHHHHHHHH
Confidence 775 344556655 36788888887763
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-29 Score=256.18 Aligned_cols=309 Identities=15% Similarity=0.166 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 154 (408)
.|...|++++..+|.+...+..++..+...|++++|..++++++...|.++.+|..++.++...|++++|+..|++++..
T Consensus 551 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444444444444444444444444444555555555554444
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHH
Q 015351 155 LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYA 232 (408)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a 232 (408)
.|+++..|..++.++...|++++|...|+++++..|+ ...|..++.++...|++++|..+++.+....| +...+..++
T Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 710 (899)
T TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG 710 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHH
Confidence 4444444444444444445555555555555444444 44444444444444555555555544444443 233445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcC
Q 015351 233 KFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312 (408)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g 312 (408)
.++...|++++|...|++++...|+ + ..+..++.++...|++++|...++++++..|++ ..++..++.++...|
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g 784 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPS---S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND--AVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCC---c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCc
Confidence 5555555555555555555555554 2 444555555555666666666666666555554 455555566666666
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 015351 313 DREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALY 392 (408)
Q Consensus 313 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~ 392 (408)
+ .++|...|++++..+|+++.++..++.++...|+ .+|+..+++++...|+++. ++..++.+
T Consensus 785 ~--------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~---------~~~~~~~~ 846 (899)
T TIGR02917 785 D--------YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA---------ILDTLGWL 846 (899)
T ss_pred C--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH---------HHHHHHHH
Confidence 6 5557777777777777777777777777777777 6677777777777777664 45556666
Q ss_pred hhhhcCChhHHhhhcC
Q 015351 393 EELDAGDMERTRDVYQ 408 (408)
Q Consensus 393 ~e~~~g~~~~A~~~~~ 408 (408)
+ ...|++++|.++|+
T Consensus 847 ~-~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 847 L-VEKGEADRALPLLR 861 (899)
T ss_pred H-HHcCCHHHHHHHHH
Confidence 6 47899999988763
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=7.5e-29 Score=255.69 Aligned_cols=350 Identities=14% Similarity=0.150 Sum_probs=282.4
Q ss_pred HHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChH--HH------------HHHHHHHHHccC
Q 015351 41 AEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTG--VW------------IKYAKWEESQKD 106 (408)
Q Consensus 41 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~------------~~la~~~~~~g~ 106 (408)
+...++++++..|........++.... ..+.+++|+..|+++++.+|++.. .| ...+..+...|+
T Consensus 288 A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 288 AIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence 455667777766654322222221122 234567899999999999998753 12 344778889999
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH------------------
Q 015351 107 FNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM------------------ 168 (408)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~------------------ 168 (408)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999988776655444
Q ss_pred ------------------------HHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 015351 169 ------------------------EEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP 223 (408)
Q Consensus 169 ------------------------~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 223 (408)
+...|++++|+..|+++++..|+ +.++..++.++...|++++|+..|+++++..|
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34578999999999999999998 88899999999999999999999999999888
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HHHcCCcHHHH
Q 015351 224 -KVSTWIKYAKFEMKMGEVDRARNVYERA----------------------------------------VEKLADDEEAE 262 (408)
Q Consensus 224 -~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------------------------------------l~~~p~~~~~~ 262 (408)
++..+..++.++...++.++|+..++++ ++..|. ++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~---~~ 603 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP---ST 603 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC---Cc
Confidence 4566666666666666666666655432 223455 67
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 015351 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 342 (408)
.++..++.++...|++++|+..|+++++..|.+ ...+..++.++...|+ +++|+..|++++...|+++.+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~--~~a~~~la~~~~~~g~--------~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGN--ADARLGLIEVDIAQGD--------LAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCC--------HHHHHHHHHHHhccCCCChHH
Confidence 788999999999999999999999999999997 7899999999999999 667999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 343 WFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 343 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+..++.++...|++++|.++|++++...|+++... +. ..++...|.++. ..|+.++|+..|+
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~-~~--a~~~~~~a~~~~-~~G~~~~A~~~y~ 735 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM-ES--ALVLRDAARFEA-QTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch-hh--HHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 99999999999999999999999999877665311 11 124556688884 8999999998874
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.3e-26 Score=198.10 Aligned_cols=338 Identities=14% Similarity=0.156 Sum_probs=282.0
Q ss_pred CCHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015351 39 ITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118 (408)
Q Consensus 39 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 118 (408)
++.++.++.|...-..+ ...-. .+.+++|+++|..+|...|+.+..+...+.+|...|++++.++...+++
T Consensus 106 ~~~e~~~k~A~~lK~~G--------N~~f~-~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 106 MLKEERLKYAAALKTKG--------NKFFR-NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred cChHHHHHHHHHHHhhh--------hhhhh-cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 55666666665554222 23333 2335789999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHhccCHHHHHHHH------------------HHHHHh--------------CCCc--------
Q 015351 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVW------------------DRAVTL--------------LPRV-------- 158 (408)
Q Consensus 119 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~------------------~~al~~--------------~p~~-------- 158 (408)
+++|+.+.+++..+..+...|++++|..-. +|.|.. .|.-
T Consensus 177 El~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 177 ELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred hcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 999999999999999999998877763321 111110 0000
Q ss_pred ---------------------------------------------------------------------hHHHHHHHHHH
Q 015351 159 ---------------------------------------------------------------------DQLWYKYIHME 169 (408)
Q Consensus 159 ---------------------------------------------------------------------~~~~~~~~~~~ 169 (408)
..++...|.++
T Consensus 257 yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 257 YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred HHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 02344456666
Q ss_pred HHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHH
Q 015351 170 EMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~ 247 (408)
.-.|+.-.|..-|..+|.++|. ...|+.++.+|....+.++-.+.|.++.+.+| ++++|...|++.+-++++++|..-
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 7778888999999999999998 67799999999999999999999999999998 688999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 015351 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327 (408)
Q Consensus 248 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~ 327 (408)
|++++..+|. +.-.+..++-.+++++.++++...|+.+.+..|.. ++++..++.++..+++ +++|.+
T Consensus 417 F~Kai~L~pe---~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqq--------Fd~A~k 483 (606)
T KOG0547|consen 417 FQKAISLDPE---NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQ--------FDKAVK 483 (606)
T ss_pred HHHHhhcChh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHh--------HHHHHH
Confidence 9999999998 88889999999999999999999999999999997 8999999999998888 788999
Q ss_pred HHHHHHhhCCC------CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCCh
Q 015351 328 QYEDEVRKNPM------NYDIWFDYIRLE-ESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDM 400 (408)
Q Consensus 328 ~~~~al~~~p~------~~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~ 400 (408)
.|+.|+.+.|. ++..+.+-+.+. .-.+++..|..++++|++.+|.+.. ....+|.++ .+.|++
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~---------A~~tlaq~~-lQ~~~i 553 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ---------AYETLAQFE-LQRGKI 553 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH---------HHHHHHHHH-HHHhhH
Confidence 99999999998 666666655543 3358999999999999999999874 566788888 699999
Q ss_pred hHHhhhcC
Q 015351 401 ERTRDVYQ 408 (408)
Q Consensus 401 ~~A~~~~~ 408 (408)
++|+++|+
T Consensus 554 ~eAielFE 561 (606)
T KOG0547|consen 554 DEAIELFE 561 (606)
T ss_pred HHHHHHHH
Confidence 99999985
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=3.2e-25 Score=219.34 Aligned_cols=318 Identities=11% Similarity=0.021 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+..++|...|+++++.+|.++.++..++.++...|++++|+..++++++.+|+++. |..+|.++...|++++|+..|++
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHH----------------------------------------------HHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQ----------------------------------------------IFER 184 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~----------------------------------------------~~~~ 184 (408)
++...|+++.++..++.++...+..+.|+. .+++
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 999999999999988888877666554443 3444
Q ss_pred HHHh---CCC--H---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-h-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 185 WMHW---MPD--Q---QGWLSYIKFELRYNEVERARQIYERFVQCHPK-V-STWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 185 al~~---~p~--~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
+++. +|. + .+.......+...|++++|+..|+++++..+. + .....++.++...|++++|+..|++++..
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 4433 222 1 11111122335668899999999998887642 2 12333588899999999999999999887
Q ss_pred cCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------------cchHHHHHHHHHHHHHcCCchhHHHH
Q 015351 255 LADDE-EAEQLFVAFAEFEERCKETERARCIYKFALDHIPK-------------GRAEDLYRKFVAFEKQYGDREGIEDA 320 (408)
Q Consensus 255 ~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------------~~~~~~~~~~~~~~~~~g~~~~~~~~ 320 (408)
.|... ........++..+...|++++|...++++....|. +....++...+.++...|+
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~------- 374 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND------- 374 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-------
Confidence 76521 11355667777788999999999999999887663 2224566677888888888
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCCh
Q 015351 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDM 400 (408)
Q Consensus 321 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~ 400 (408)
.++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++.. +++..|... ...|++
T Consensus 375 -~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~---------l~~~~a~~a-l~~~~~ 443 (765)
T PRK10049 375 -LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN---------LEVEQAWTA-LDLQEW 443 (765)
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH---------HHHHHHHHH-HHhCCH
Confidence 667999999999999999999999999999999999999999999999999986 566666666 488999
Q ss_pred hHHhhhc
Q 015351 401 ERTRDVY 407 (408)
Q Consensus 401 ~~A~~~~ 407 (408)
++|..++
T Consensus 444 ~~A~~~~ 450 (765)
T PRK10049 444 RQMDVLT 450 (765)
T ss_pred HHHHHHH
Confidence 9998876
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=4.4e-25 Score=203.98 Aligned_cols=264 Identities=11% Similarity=0.085 Sum_probs=119.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcC
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV----DQLWYKYIHMEEMLG 173 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~ 173 (408)
|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4444444444445555555544444444444444444444444444544444444432111 123444444444444
Q ss_pred ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCHHHHHH
Q 015351 174 NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV------STWIKYAKFEMKMGEVDRARN 246 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~a~~~~~~~~~~~A~~ 246 (408)
++++|..+|+++++..|. ..++..++.++...|++++|+..++++++..|.. ..+..++.++...|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 455555444444444443 4444444444444444444544444444443321 123334444444445555555
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 015351 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRR 326 (408)
Q Consensus 247 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~ 326 (408)
.|+++++..|+ ....+..++.++...|++++|...|++++...|.+ ....+..++..+...|+ +++|.
T Consensus 202 ~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~--------~~~A~ 269 (389)
T PRK11788 202 LLKKALAADPQ---CVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQALGD--------EAEGL 269 (389)
T ss_pred HHHHHHhHCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHcCC--------HHHHH
Confidence 55544444444 34444444444444455555555555444443332 12333344444444444 33344
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 015351 327 FQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 327 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
..+++++...|+.. .+..++.++...|++++|..+++++++..|++.
T Consensus 270 ~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 270 EFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 44444444444332 224444444444455555555554444444433
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=9.4e-25 Score=201.76 Aligned_cols=285 Identities=11% Similarity=0.108 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC----hHHHHHHHHHHHhccCHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARN 146 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~ 146 (408)
+..++|...|+++++.+|+++.+|..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 445679999999999999999999999999999999999999999999854332 3578899999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 147 VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 147 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
+|+++++..|.+..++..++.++...|++++|+..++++++..|. ...+..++.++...|++++|+.+|+++++
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999999998999999999999999999999999999998776 22456778888999999999999999999
Q ss_pred hCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHH
Q 015351 221 CHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAED 299 (408)
Q Consensus 221 ~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 299 (408)
..|+ ...+..++.++...|++++|.+.|+++++..|.. ...++..++.++...|++++|...++++++..|+. .
T Consensus 209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~ 283 (389)
T PRK11788 209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY--LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA---D 283 (389)
T ss_pred HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---h
Confidence 9885 6788999999999999999999999999987763 35678889999999999999999999999998875 3
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 015351 300 LYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES--VGNKERAREVYERAIA 368 (408)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~ 368 (408)
.+..++.++...|+ +++|...|++++..+|++..+...+...+.. .|+..++...+++.++
T Consensus 284 ~~~~la~~~~~~g~--------~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 284 LLLALAQLLEEQEG--------PEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHHhCC--------HHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 44778888989998 6679999999999999887655444444322 4578888888877665
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.7e-24 Score=214.28 Aligned_cols=317 Identities=11% Similarity=0.023 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+..++|+..|++++..+|....++..+|.++...|++++|..+|+++++.+|.++.++..++.++...|++++|+..+++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34567999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHH-------------------
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVER------------------- 210 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~------------------- 210 (408)
++...|++.. |..++.++...|++++|+..++++++..|+ ..++..++.++...+..+.
T Consensus 109 ~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~ 187 (765)
T PRK10049 109 LVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE 187 (765)
T ss_pred HHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999 999999999999999999999999999999 8888888877765555443
Q ss_pred ---------------------------HHHHHHHHHHhC---CChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 015351 211 ---------------------------ARQIYERFVQCH---PKVS-----TWIKYAKFEMKMGEVDRARNVYERAVEKL 255 (408)
Q Consensus 211 ---------------------------A~~~~~~al~~~---p~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 255 (408)
|+..++.+++.. |... ..+.....+...|++++|+..|+++++..
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 444555555442 2211 11221223457799999999999999886
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc--hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 015351 256 ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR--AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV 333 (408)
Q Consensus 256 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 333 (408)
|..+.....| ++.++...|++++|+.+|++++...|.+. .......+...+...|+ +++|+..++++.
T Consensus 268 ~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~--------~~eA~~~l~~~~ 337 (765)
T PRK10049 268 QIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN--------YPGALTVTAHTI 337 (765)
T ss_pred CCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc--------HHHHHHHHHHHh
Confidence 4423244444 58899999999999999999998776541 13445555555667787 667999999999
Q ss_pred hhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcC
Q 015351 334 RKNPM---------------NYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAG 398 (408)
Q Consensus 334 ~~~p~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g 398 (408)
..+|. ...++..++.++...|++++|+.++++++...|.++. +++.+|.++. ..|
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------l~~~lA~l~~-~~g 407 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------LRIDYASVLQ-ARG 407 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHH-hcC
Confidence 88773 2356778999999999999999999999999999975 7888888884 899
Q ss_pred ChhHHhhhcC
Q 015351 399 DMERTRDVYQ 408 (408)
Q Consensus 399 ~~~~A~~~~~ 408 (408)
++++|++.|+
T Consensus 408 ~~~~A~~~l~ 417 (765)
T PRK10049 408 WPRAAENELK 417 (765)
T ss_pred CHHHHHHHHH
Confidence 9999998763
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2e-24 Score=214.21 Aligned_cols=284 Identities=12% Similarity=0.010 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHhcCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 75 RKRKEFEDLIRRVRW--NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
.+...+.+++...|. ++.+|..+|.++.. |++.+|+..|.+++...|.+. ....++..+...|++++|+..|++++
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 356677777888888 99999999999987 899999999999999999865 36667778889999999999999998
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHH
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKY 231 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 231 (408)
...|. ...+..+|.++...|++++|..+|+++++..|. ...+..++......|++++|+..|+++++..|+...+..+
T Consensus 537 ~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~L 615 (987)
T PRK09782 537 LHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVAR 615 (987)
T ss_pred ccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 87666 456889999999999999999999999999988 5555555655666799999999999999999998899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHc
Q 015351 232 AKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311 (408)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 311 (408)
|.++.+.|++++|+..|++++...|+ ++.++.++|.++...|++++|+.+|+++++..|.+ ..++..++.++...
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd---~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~--~~a~~nLA~al~~l 690 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPN---NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD--PALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHC
Confidence 99999999999999999999999999 78999999999999999999999999999999988 78999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 015351 312 GDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 312 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
|+ ++.|+..|++++..+|++..+...+|.+.....++..|.+.+.|+....|...
T Consensus 691 Gd--------~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 691 DD--------MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CC--------HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99 66799999999999999999999999999999999999999999999888754
No 21
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=1.7e-23 Score=194.47 Aligned_cols=324 Identities=17% Similarity=0.160 Sum_probs=267.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
|..+.|..++.++|+.+|.++.+|..+|.+|..+|+.+++...+-.|-.++|++.+.|..++....++|+++.|+-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFELRYNEVERARQIYERFVQCHP- 223 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p- 223 (408)
|++.+|.+.......+.++.++|+...|...|.++++..|. .+.-...+..+...++-+.|.+.++.++....
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999994 33334456666777777999999999988443
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------------------
Q 015351 224 --KVSTWIKYAKFEMKMGEVDRARNVYERAVE------------------------------------------------ 253 (408)
Q Consensus 224 --~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------------------------------------ 253 (408)
+.+....++.++.....++.|.........
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~ 392 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE 392 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc
Confidence 234445556666655555555544443332
Q ss_pred -------------HcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHH
Q 015351 254 -------------KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320 (408)
Q Consensus 254 -------------~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~ 320 (408)
.+-.....+++++.++..+...|++..|+.+|..++...+.. ...+|...+.++...|.
T Consensus 393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~~l~e------- 464 (895)
T KOG2076|consen 393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYMELGE------- 464 (895)
T ss_pred cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHHHHhh-------
Confidence 110011247889999999999999999999999999876554 47899999999999998
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCCh
Q 015351 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDM 400 (408)
Q Consensus 321 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~ 400 (408)
.+.|+..|++++...|++.++...++.++.+.|+.++|.+.+++..--++.+.+...|..-..+...+...+. +.|+.
T Consensus 465 -~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~-~~gk~ 542 (895)
T KOG2076|consen 465 -YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF-QVGKR 542 (895)
T ss_pred -HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH-HhhhH
Confidence 5679999999999999999999999999999999999999999977444444444455555566677777774 78887
Q ss_pred hHHh
Q 015351 401 ERTR 404 (408)
Q Consensus 401 ~~A~ 404 (408)
++=+
T Consensus 543 E~fi 546 (895)
T KOG2076|consen 543 EEFI 546 (895)
T ss_pred HHHH
Confidence 7643
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.2e-25 Score=200.02 Aligned_cols=289 Identities=12% Similarity=0.111 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
..|...|++.-...++...+...+|+.|+..+++++|.++|+.+-+..|..++-.-.+...+....+.-+---+-+..+.
T Consensus 336 ~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~ 415 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID 415 (638)
T ss_pred HHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 46889999966778888888889999999999999999999999999998876666666666666665555556677788
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHH
Q 015351 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKY 231 (408)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 231 (408)
.+|++|+.|..+|.++.-+++.+.|+.+|+||++++|. .-++..+|.=......++.|...|+.++..+| +..+|+.+
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 89999999999999999999999999999999999998 88888888878888999999999999999998 57899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHc
Q 015351 232 AKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311 (408)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 311 (408)
|.+|.++++++.|.-.|++|++.+|. +..+...++.++.+.|+.++|+.+|++|+..+|.+. .--...+.++...
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~---nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS---NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--LCKYHRASILFSL 570 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc---chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhh
Confidence 99999999999999999999999999 899999999999999999999999999999999984 3444456666666
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 312 GDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 312 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
++ +++|...++...+.-|++..++..+|.+|.+.|+.+.|+.-|-=|...+|.-..
T Consensus 571 ~~--------~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 571 GR--------YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cc--------hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 77 567999999999999999999999999999999999999999999999997553
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=4.9e-24 Score=211.43 Aligned_cols=311 Identities=11% Similarity=-0.007 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccC---H-------------------------HHHHHHHHHHHh
Q 015351 71 DYRLRKRKEFEDLIRRVRWN---TGVWIKYAKWEESQKD---F-------------------------NRARSVWERALE 119 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~---~-------------------------~~A~~~~~~al~ 119 (408)
+....|...|+++....++. ..+...++.++..++. . ..+...+.+++.
T Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 469 (987)
T PRK09782 390 GQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG 469 (987)
T ss_pred ccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc
Confidence 44577889999888753322 2344477777777644 1 223445556666
Q ss_pred ccCC--ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 015351 120 VDYR--NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLS 197 (408)
Q Consensus 120 ~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 197 (408)
.+|. ++.+|..+|.++.. +++.+|+..|.+++...|++. ....++..+...|++++|+..|+++....|....+..
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~ 547 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLA 547 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHH
Confidence 7788 99999999999987 899999999999999999854 4666777778999999999999999887777677888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q 015351 198 YIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCK 276 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 276 (408)
++.++...|++++|..+|+++++..|. ......++......|++++|...|+++++..|+ +..+..++.++.+.|
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG 623 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS----ANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCC
Confidence 999999999999999999999999875 444555555556679999999999999999985 678999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 015351 277 ETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNK 356 (408)
Q Consensus 277 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 356 (408)
++++|+..|++++...|++ ..++..++.++...|+ +++|+..|+++++.+|+++.++.++|.++...|++
T Consensus 624 ~~deA~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G~--------~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNN--SNYQAALGYALWDSGD--------IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999998 7899999999999998 66799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 357 ERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 357 ~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
++|+..|+++++..|++.. +...++.+.+ ...++.+|.+.|
T Consensus 694 ~eA~~~l~~Al~l~P~~a~---------i~~~~g~~~~-~~~~~~~a~~~~ 734 (987)
T PRK09782 694 AATQHYARLVIDDIDNQAL---------ITPLTPEQNQ-QRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHHHHhcCCCCch---------hhhhhhHHHH-HHHHHHHHHHHH
Confidence 9999999999999998875 3445555553 556666666543
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2e-24 Score=201.90 Aligned_cols=322 Identities=12% Similarity=0.128 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc----CHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWN-TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK----FINHAR 145 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~ 145 (408)
|++++|..+|-++++.+|++ +-.++.+|..+...|+++.|..+|+++++..|++......+|.+|...+ ..+.|.
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 55677888888888888877 6677888888888888888888888888888888888888888877775 567788
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015351 146 NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM------PDQQGWLSYIKFELRYNEVERARQIYERFV 219 (408)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~A~~~~~~al 219 (408)
.+..+++...|.+.++|..++.++.....+. ++.+|.+|+..- +.+.+..++|......|+++.|...|.+++
T Consensus 401 ~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 401 NVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 8888888888888888888888876654444 377777777421 227777888888888888888888888888
Q ss_pred HhC-----CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 220 QCH-----PK------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288 (408)
Q Consensus 220 ~~~-----p~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 288 (408)
... ++ ..+-+++|.++...++++.|.+.|...++.+|. ..+.+..++.+....++..+|...+..+
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG---YIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch---hHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 762 11 124678888888888889999999988888888 7888888887777788888888888888
Q ss_pred HhhCCCcchHHHHHHHHHHHHHcCCchhH----------------------------------------HHHHHHHHHHH
Q 015351 289 LDHIPKGRAEDLYRKFVAFEKQYGDREGI----------------------------------------EDAIVGKRRFQ 328 (408)
Q Consensus 289 l~~~p~~~~~~~~~~~~~~~~~~g~~~~~----------------------------------------~~~~~~~A~~~ 328 (408)
++.+..+ +.+|..++.++.....+..+ +.-..++|+.+
T Consensus 557 l~~d~~n--p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 557 LNIDSSN--PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HhcccCC--cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 8876665 56666666554432111100 11137899999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 329 YEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 329 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
|.++|..+|.|..+-..+|-++...|++.+|+.+|.++.+...+..+ +|++.|+++ ..+|+|-.|+++|+
T Consensus 635 y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d---------v~lNlah~~-~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 635 YGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED---------VWLNLAHCY-VEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc---------eeeeHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876554443 799999999 69999999999984
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.94 E-value=2e-26 Score=202.32 Aligned_cols=269 Identities=19% Similarity=0.204 Sum_probs=120.1
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHH
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV--DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLW 162 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (408)
+..|. ...+.+|.++...|++++|.+++++.+.. .|+++.+|..+|.+....++++.|+..|++++...+.++..+
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34565 34457899999999999999999776654 489999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--C-ChHHHHHHHHHHHHcC
Q 015351 163 YKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCH--P-KVSTWIKYAKFEMKMG 239 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~a~~~~~~~ 239 (408)
..++.+ ...+++++|..+++++.+..+++..+..++.++...++++++..+++++.... + ++.+|..+|.++.+.|
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 899988 78999999999999999888888888889999999999999999999987654 2 5678999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHH
Q 015351 240 EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIED 319 (408)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~ 319 (408)
++++|+.+|+++++..|+ ++.++..++.++...|+.++++.+++...+..|.+ +.+|..++..+...|+
T Consensus 161 ~~~~A~~~~~~al~~~P~---~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~--~~~~~~la~~~~~lg~------ 229 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD---DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD--PDLWDALAAAYLQLGR------ 229 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS--CCHCHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH--HHHHHHHHHHhccccc------
Confidence 999999999999999999 79999999999999999999999999888877766 4688999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 320 AIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 320 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
.++|..+|++++..+|+++.++..+|.++...|+.++|..++.++++.
T Consensus 230 --~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 230 --YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp --HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred --cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 567999999999999999999999999999999999999999998764
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.93 E-value=1.2e-25 Score=197.31 Aligned_cols=266 Identities=19% Similarity=0.235 Sum_probs=118.2
Q ss_pred hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHH
Q 015351 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL--LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGW 195 (408)
Q Consensus 119 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 195 (408)
+..|. ...+.+|.++...|++++|.+++.+.+.. .|+++..|..++.+....++++.|+..|+++++.++. +..+
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566 34457899999999999999999776655 4889999999999999999999999999999999887 7778
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q 015351 196 LSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC 275 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 275 (408)
..++.+ ...+++++|..+++++.+..+++..+..++.++...++++++..+++++.... ..+.++.+|..+|.++.+.
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHC
T ss_pred cccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHc
Confidence 888887 68899999999999999888888888889999999999999999999987644 2223789999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 015351 276 KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGN 355 (408)
Q Consensus 276 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 355 (408)
|+.++|+..|+++++..|++ ..+...++.++...|+ .++++..+.......|.++.+|..+|.++...|+
T Consensus 160 G~~~~A~~~~~~al~~~P~~--~~~~~~l~~~li~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDD--PDARNALAWLLIDMGD--------YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCC--------hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc
Confidence 99999999999999999998 7888889998888887 4557888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 356 KERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 356 ~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+++|..+|+++++..|+++. +...||.++. ..|+.++|..+++
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~---------~~~~~a~~l~-~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPL---------WLLAYADALE-QAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HH---------HHHHHHHHHT--------------
T ss_pred cccccccccccccccccccc---------cccccccccc-ccccccccccccc
Confidence 99999999999999999996 5778999995 9999999998863
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-22 Score=173.69 Aligned_cols=298 Identities=14% Similarity=0.119 Sum_probs=246.1
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHH-----------------------------hcc
Q 015351 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEM-----------------------------KNK 139 (408)
Q Consensus 89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-----------------------------~~~ 139 (408)
.++-.++.+|.++...|....|+..|..++...|.+-.+|..++.+.. ...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 445666777888888888888888888888888887777776665432 223
Q ss_pred CHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHH-------------------
Q 015351 140 FINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGW------------------- 195 (408)
Q Consensus 140 ~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~------------------- 195 (408)
+.+++++-+++.+.. .|.+.-+-...|.+...+.++++|++.|+...+.+|- .+.+
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 678888888888888 8888888888888999999999999999999998873 1111
Q ss_pred ------------HHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHH
Q 015351 196 ------------LSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262 (408)
Q Consensus 196 ------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 262 (408)
.-.|+.|.-.++.++|+.+|+++++.+|. ..+|..+|.=|..+++...|++.|++|++.+|. +.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~---Dy 398 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR---DY 398 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch---hH
Confidence 11234455567889999999999999996 678999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 015351 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 342 (408)
..|+.+|+.|...+-+.=|+-.|++|+...|.+ ..+|..+++++.+.++ .++|++.|.+++.....+..+
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD--sRlw~aLG~CY~kl~~--------~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPND--SRLWVALGECYEKLNR--------LEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999998 7999999999999999 667999999999999889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhh
Q 015351 343 WFDYIRLEESVGNKERAREVYERAIANV---PPAEEKRYWQRYIYLWINYALYEELDAGDMERTRD 405 (408)
Q Consensus 343 ~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~ 405 (408)
+..+|.++.+.++.++|..+|++.++.. ....+. .+...+=+|.++ .+++++++|-.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~-----t~ka~~fLA~~f-~k~~~~~~As~ 528 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDE-----TIKARLFLAEYF-KKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchH-----HHHHHHHHHHHH-HhhcchHHHHH
Confidence 9999999999999999999999999843 111111 112233366777 58999998853
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.6e-23 Score=187.82 Aligned_cols=292 Identities=12% Similarity=0.102 Sum_probs=248.2
Q ss_pred HHHHHHHHHHH--ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 93 VWIKYAKWEES--QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 93 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
++..+|..+.. +-+..+|+..|++.-...++..-+...+|..|++.+++++|..+|+.+-+..|-...---.+...++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 44555555544 4567899999999778888888888899999999999999999999999998864433223333333
Q ss_pred HcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 171 MLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVY 248 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~ 248 (408)
...+.-+---+-+..+..+|+ ++.|..+|+++.-+++.+.|++.|+++++.+|. .-++..+|.=+.....+|.|...|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 333333333345666778888 999999999999999999999999999999995 556888888888889999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 015351 249 ERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ 328 (408)
Q Consensus 249 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~ 328 (408)
+.|+..+|. ...+|+.+|.+|.++++++.|.-.|++|++++|.+ ..+...++.++.+.|. .++|+.+
T Consensus 479 r~Al~~~~r---hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~~~k~--------~d~AL~~ 545 (638)
T KOG1126|consen 479 RKALGVDPR---HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQHQLKR--------KDKALQL 545 (638)
T ss_pred HhhhcCCch---hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHHHhhh--------hhHHHHH
Confidence 999999998 89999999999999999999999999999999998 6778888888888888 5579999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 329 YEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 329 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
|++|+..+|.++-.-+..|.++...+++++|...+++.-+..|++.. +....+..+ .+.|+.+.|..-|
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~---------v~~llgki~-k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS---------VFALLGKIY-KRLGNTDLALLHF 614 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH---------HHHHHHHHH-HHHccchHHHHhh
Confidence 99999999999999999999999999999999999999999999886 456677888 5889999887654
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-22 Score=173.52 Aligned_cols=288 Identities=16% Similarity=0.101 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHh-cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 75 RKRKEFEDLIRR-VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 75 ~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
.++.-+++.+.. .|.+.-+-...|.+...+.|+++|+.+|+...+.+|...+-.-.+.+++.-.++-.+-.-+-+.+..
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~ 324 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN 324 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 344444555544 5555555555566666666666666666666666665555444455544444443333344444455
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHH
Q 015351 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKY 231 (408)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 231 (408)
++.--++.....|..|...++.++|+..|++|++++|. ..+|..+|.=+...++...|+..|++|++.+| +..+|..+
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 55545556666677888888999999999999999999 99999999999999999999999999999999 68999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHc
Q 015351 232 AKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311 (408)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 311 (408)
|+.|.-++.+.=|+-.|++|++.-|. ++.+|..+|.+|.+.++.++|+++|.+++.....+ ...+..++.++.+.
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPn---DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte--~~~l~~LakLye~l 479 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPN---DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE--GSALVRLAKLYEEL 479 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHH
Confidence 99999999999999999999999999 79999999999999999999999999999976665 56788899999998
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 312 GDREGIEDAIVGKRRFQYEDEVR-------KNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 312 g~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
++ ..+|...|++.++ .+|+...+..-++..+.+.+++++|..+..+++.-.+...+
T Consensus 480 ~d--------~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee 542 (559)
T KOG1155|consen 480 KD--------LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEE 542 (559)
T ss_pred Hh--------HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence 88 5568888999888 45666667777999999999999999999998877544433
No 30
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.92 E-value=1.4e-22 Score=181.78 Aligned_cols=310 Identities=21% Similarity=0.378 Sum_probs=150.5
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCC-----hHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-CC
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYRN-----HTLWLKYAEVEMKNKFINHARNVWDRAVTLL-PR 157 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~ 157 (408)
..+|+++.-|.....++ .|+..+-+..|..|+. .+|.. ..+|..+|.+|...|+.+.|+.+|+++++.+ +.
T Consensus 343 RQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 34455555555443332 2344555555555542 23322 2455555555555555555555555555543 11
Q ss_pred ---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------------CHHHHHHHHHHHHHhhhHHHHHHHH
Q 015351 158 ---VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP-------------------DQQGWLSYIKFELRYNEVERARQIY 215 (408)
Q Consensus 158 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~~~~~~~~~~~~~A~~~~ 215 (408)
-..+|..+|....+..+++.|..+.++|..... +..+|..|+.++...|-++....+|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 134555555555555555555555555542110 1334555555555555555555555
Q ss_pred HHHHHhC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHhh
Q 015351 216 ERFVQCH-PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER---CKETERARCIYKFALDH 291 (408)
Q Consensus 216 ~~al~~~-p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~ 291 (408)
++.+.+. .++++..++|.++....-++++.++|++.+..++- +...++|..|..-..+ ....++|+.+|++|++.
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC-ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 5555543 24555555555555555555555555555555432 1134455444332221 12455555555555555
Q ss_pred CCCcchHHHHHHHHHHHHHcCCchhHHHH----------------------------HHHHHHHHHHHHHhhCCCC--HH
Q 015351 292 IPKGRAEDLYRKFVAFEKQYGDREGIEDA----------------------------IVGKRRFQYEDEVRKNPMN--YD 341 (408)
Q Consensus 292 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~----------------------------~~~~A~~~~~~al~~~p~~--~~ 341 (408)
+|+.....+|..|+.++...|-......+ .+...+.+|++|++.-|+. ..
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~ 659 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKARE 659 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHH
Confidence 55444444555555555555441110000 0222455666666655543 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhh
Q 015351 342 IWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRD 405 (408)
Q Consensus 342 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~ 405 (408)
..+.++.++.+.|..+.|+.+|.-+-+.+|......+|.. +-.|+ .++|+-+.-++
T Consensus 660 mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~t-------wk~FE-vrHGnedT~ke 715 (835)
T KOG2047|consen 660 MCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDT-------WKEFE-VRHGNEDTYKE 715 (835)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHH-------HHHHH-HhcCCHHHHHH
Confidence 4455666666666666666666666665555444333332 44444 46666444433
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.9e-22 Score=186.12 Aligned_cols=317 Identities=12% Similarity=0.166 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
.+.|-..|..+++..|.++..++.-|.+.+..|+|..|+.+|.+++..+|.. ++..+..|.++.+.|+.+.|+..|+++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999986 467788899999999999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---
Q 015351 152 VTLLPRVDQLWYKYIHMEEMLGN---VAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK--- 224 (408)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 224 (408)
++++|++..+...++.+-....+ +..+...+.++...+|. +.+...++..+.-.|+++.+..+...++....+
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999998887765 56789999999999998 999999999999999999999999999987632
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHH
Q 015351 225 -VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRK 303 (408)
Q Consensus 225 -~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 303 (408)
.+.++.+|..+..+|++++|..+|.++++.++++ ..-.++.+|++++..|+++.+..+|+++++..|++ .+....
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~--~etm~i 381 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN--YETMKI 381 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcch--HHHHHH
Confidence 4568999999999999999999999999999884 36778899999999999999999999999999998 778888
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchhHHHH
Q 015351 304 FVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANV----PPAEEKRYW 379 (408)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~w 379 (408)
++.++...+..... .++|..+..+++...|.+.++|+.++.++.. ++...+..+|.+|+... ..-|. .
T Consensus 382 LG~Lya~~~~~~~~----~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~-E-- 453 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEK----RDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPP-E-- 453 (1018)
T ss_pred HHhHHHhhhhhhHH----HHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCH-H--
Confidence 88888776422221 6779999999999999999999999999875 56666699999998431 11222 1
Q ss_pred HHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 380 QRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 380 ~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
+.-+.|.+. ...|++.+|...|
T Consensus 454 -----~LNNvaslh-f~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 454 -----VLNNVASLH-FRLGNIEKALEHF 475 (1018)
T ss_pred -----HHHhHHHHH-HHhcChHHHHHHH
Confidence 233344444 4678888887665
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-22 Score=174.09 Aligned_cols=323 Identities=15% Similarity=0.149 Sum_probs=268.6
Q ss_pred CHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHH-------
Q 015351 40 TAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARS------- 112 (408)
Q Consensus 40 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~------- 112 (408)
.+.+....|++.-|+.+..-..+-.+++.+.+. .+-++...++|+.+|+.+.+++..+..+...|++++|..
T Consensus 133 eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~-~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci 211 (606)
T KOG0547|consen 133 EAIKYYTQAIELCPDEPIFYSNRAACYESLGDW-EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCI 211 (606)
T ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhH-HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHH
Confidence 355677788888888754444455555555443 667888899999999999999999999999999988744
Q ss_pred -----------HHHHHHhc--------------cC---------------------------------------------
Q 015351 113 -----------VWERALEV--------------DY--------------------------------------------- 122 (408)
Q Consensus 113 -----------~~~~al~~--------------~p--------------------------------------------- 122 (408)
+.+|.|+. .|
T Consensus 212 ~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~ 291 (606)
T KOG0547|consen 212 LEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGL 291 (606)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhC
Confidence 22222210 00
Q ss_pred -----------------------CC---------hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 123 -----------------------RN---------HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 123 -----------------------~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
.+ ..+....|.+++-.|+...|...|+.++.++|..+.++..++.+|.
T Consensus 292 ~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~ 371 (606)
T KOG0547|consen 292 EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA 371 (606)
T ss_pred chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh
Confidence 00 2334444555666689999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 171 MLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVY 248 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~ 248 (408)
..++.++-...|.+|..++|. +++|+..|++..-.+++++|+.-|++++.++|. .-.++.++-.+.++++++++...|
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~F 451 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTF 451 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999995 556889999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------cchHHHHHHHHHHHHHcCCchhHHHHHH
Q 015351 249 ERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK------GRAEDLYRKFVAFEKQYGDREGIEDAIV 322 (408)
Q Consensus 249 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (408)
+.+.+.+|. .++++..++.++..++++++|.+.|..++.+.|. +..+.+....+.+.. .++ +
T Consensus 452 ee~kkkFP~---~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d--------~ 519 (606)
T KOG0547|consen 452 EEAKKKFPN---CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KED--------I 519 (606)
T ss_pred HHHHHhCCC---CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhh--------H
Confidence 999999999 8999999999999999999999999999999888 433344444444332 244 7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 323 GKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 323 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
..|..++.+|++.+|....++..+|.+..++|+.++|+++|++++.......+
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence 78999999999999999999999999999999999999999999987666555
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.6e-22 Score=177.89 Aligned_cols=275 Identities=15% Similarity=0.103 Sum_probs=251.4
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015351 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168 (408)
Q Consensus 89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 168 (408)
+++++....++.+...+++.+..++++..++.+|-++..+.....++.+.|+..+-..+-.+.+...|+.+-.|+..|-+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 46778888899999999999999999999999999999888877799999999988888899999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHcCCHHHHHH
Q 015351 169 EEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TWIKYAKFEMKMGEVDRARN 246 (408)
Q Consensus 169 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~a~~~~~~~~~~~A~~ 246 (408)
|...|++.+|+.+|.|+..++|. ...|+.+|..+.-.|..++|+..|.+|-+..|... -.+-+|.=|..++++..|.+
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999998533 34455666778999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----Cc-chHHHHHHHHHHHHHcCCchhHHHHH
Q 015351 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP----KG-RAEDLYRKFVAFEKQYGDREGIEDAI 321 (408)
Q Consensus 247 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 321 (408)
+|.+|+...|. +|-+...+|.+....+.+.+|..+|+.++...+ .. .+..++..+|..+++.+.
T Consensus 402 Ff~~A~ai~P~---Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-------- 470 (611)
T KOG1173|consen 402 FFKQALAIAPS---DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-------- 470 (611)
T ss_pred HHHHHHhcCCC---cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh--------
Confidence 99999999999 799999999999999999999999999995322 21 256779999999999998
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 015351 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 322 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
+.+|+..|+++|...|.++.++..+|-++...|+++.|++.|.+++...|++.
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 66799999999999999999999999999999999999999999999999985
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=2.6e-21 Score=180.13 Aligned_cols=298 Identities=20% Similarity=0.254 Sum_probs=245.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
....+..|......|++++|..++..+++.+|.++.+|..+|.++...|+.+++...+-.|-.++|.+...|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34567778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCHHH
Q 015351 171 MLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV------STWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~a~~~~~~~~~~~ 243 (408)
++|++..|+-+|.+|++..|. .......+.++.+.|+...|...|.+++...|.. ......+..+...++.+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999 7888889999999999999999999999999832 234455777788888899
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----------------------CC--C-----
Q 015351 244 ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH----------------------IP--K----- 294 (408)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------------~p--~----- 294 (408)
|.+.++.++....+ ....+-+..++.+++....++.|.......... ++ .
T Consensus 299 a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 299 AAKALEGALSKEKD-EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHhhccc-cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 99999999984433 223455667788888888888887776665541 00 0
Q ss_pred ---------------------------------cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC-CH
Q 015351 295 ---------------------------------GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM-NY 340 (408)
Q Consensus 295 ---------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 340 (408)
...+.++...+..+...|. +..|+.+|..++...+. +.
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~--------~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK--------YKEALRLLSPITNREGYQNA 449 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc--------HHHHHHHHHHHhcCccccch
Confidence 0012333333334444444 66788889888877664 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
.+|..+|.+|...|.+++|+.+|++++...|++.+ +-+.++.+++ +.|+.++|.+++
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D---------~Ri~Lasl~~-~~g~~EkalEtL 506 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD---------ARITLASLYQ-QLGNHEKALETL 506 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh---------hhhhHHHHHH-hcCCHHHHHHHH
Confidence 79999999999999999999999999999999986 4556777774 899999998875
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.91 E-value=1.1e-20 Score=174.18 Aligned_cols=293 Identities=14% Similarity=0.048 Sum_probs=226.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHcC
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD-QLWYKYIHMEEMLG 173 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~ 173 (408)
..-|.+....|+++.|.+.+.++.+..|+....+...|.+....|+++.|...+.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 33455666779999999999999998888888888889999999999999999999999888875 46666799999999
Q ss_pred ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHH----HHHHHHHHHcCCHHHHHHH
Q 015351 174 NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTW----IKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~----~~~a~~~~~~~~~~~A~~~ 247 (408)
+++.|...++++++..|+ +.++..++.++...|++++|...+.+..+... +.... .....-....+..+++.+.
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999998 88888899999999999999999999988743 22211 1111112333444555667
Q ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHH--HHHHHHHHHHHcCCchhHHHHHHHH
Q 015351 248 YERAVEKLAD-DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAED--LYRKFVAFEKQYGDREGIEDAIVGK 324 (408)
Q Consensus 248 ~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (408)
+..+.+..|. .+.++.++..++..+...|++++|...++++++..|++.... .+..+..+ ..++ ...
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l--~~~~--------~~~ 317 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL--KPED--------NEK 317 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc--CCCC--------hHH
Confidence 7777777773 112688999999999999999999999999999888873211 22222222 2244 345
Q ss_pred HHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCCh
Q 015351 325 RRFQYEDEVRKNPMNY--DIWFDYIRLEESVGNKERAREVYE--RAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDM 400 (408)
Q Consensus 325 A~~~~~~al~~~p~~~--~~~~~~~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~ 400 (408)
++..++++++.+|+++ .+...+|.++.+.|++++|++.|+ ++++..|++.. +..++.+++ +.|+.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~----------~~~La~ll~-~~g~~ 386 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND----------LAMAADAFD-QAGDK 386 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH----------HHHHHHHHH-HcCCH
Confidence 7888999999999999 888899999999999999999999 57777776653 446788885 88999
Q ss_pred hHHhhhcC
Q 015351 401 ERTRDVYQ 408 (408)
Q Consensus 401 ~~A~~~~~ 408 (408)
++|.++|+
T Consensus 387 ~~A~~~~~ 394 (409)
T TIGR00540 387 AEAAAMRQ 394 (409)
T ss_pred HHHHHHHH
Confidence 99988874
No 36
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.91 E-value=6.4e-21 Score=171.14 Aligned_cols=283 Identities=21% Similarity=0.428 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHH-hcCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC----hHHHHHHHHHHHhccCHH
Q 015351 73 RLRKRKEFEDLIR-RVRWN-----TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFIN 142 (408)
Q Consensus 73 ~~~A~~~~~~~l~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~ 142 (408)
..+-+..|.++++ .+|.- ..+|..+|++|...|+++.|+.+|+++++.+-.. ..+|..+|.+++.+.+++
T Consensus 363 ~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 363 AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHH
Confidence 3456778888874 46653 3689999999999999999999999999865443 489999999999999999
Q ss_pred HHHHHHHHHHHhCCC------------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 015351 143 HARNVWDRAVTLLPR------------------VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFEL 203 (408)
Q Consensus 143 ~A~~~~~~al~~~p~------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 203 (408)
.|..+.++|+..... +..+|..++++....|.++....+|.+.+.+.-- +.+..+|+.++.
T Consensus 443 ~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE 522 (835)
T KOG2047|consen 443 AALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE 522 (835)
T ss_pred HHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999876422 2468999999999999999999999999987655 888999999999
Q ss_pred HhhhHHHHHHHHHHHHHhCC--C-hHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q 015351 204 RYNEVERARQIYERFVQCHP--K-VSTWIKYAKFEM---KMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKE 277 (408)
Q Consensus 204 ~~~~~~~A~~~~~~al~~~p--~-~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 277 (408)
.+.-++++.++|++.+.+++ . .++|..+..... .....+.|+.+|+++++.+|. .....+++.|+.+..+.|-
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp-~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP-EHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999885 3 467877765543 233788999999999998884 3356778888888888776
Q ss_pred hHHHHHHHHHHHhhC------------------------------------CCcchHHHHHHHHHHHHHcCCchhHHHHH
Q 015351 278 TERARCIYKFALDHI------------------------------------PKGRAEDLYRKFVAFEKQYGDREGIEDAI 321 (408)
Q Consensus 278 ~~~A~~~~~~al~~~------------------------------------p~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 321 (408)
...|+++|++|.... |++........+++++.+.|.
T Consensus 602 ar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE-------- 673 (835)
T KOG2047|consen 602 ARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE-------- 673 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh--------
Confidence 666666666655443 444334445555556666665
Q ss_pred HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015351 322 VGKRRFQYEDEVRKNPM--NYDIWFDYIRLEESVGNKERAREVYE 364 (408)
Q Consensus 322 ~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~ 364 (408)
.++|+.+|.-+-+..|. +++.|...-.++.+.||-+--+++++
T Consensus 674 idRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 674 IDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77899999998887543 78899999999999999665555543
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.91 E-value=2.1e-20 Score=172.40 Aligned_cols=287 Identities=11% Similarity=0.055 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHhccCHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH-TLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
|+.+.|.+.+.++.+..|.....+...|.....+|+++.|...++++.+..|++. .+...++.+....|+++.|...++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5567799999999999999888889999999999999999999999999999985 577778999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHH----HHHHHHHHhhhHHHHHHHHHHHHHhCC-
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWL----SYIKFELRYNEVERARQIYERFVQCHP- 223 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~----~~~~~~~~~~~~~~A~~~~~~al~~~p- 223 (408)
++++..|+++.++..++.++...|+++.|...+.+..+.... +.... ....-....+..+++...+.++.+..|
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~ 257 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR 257 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH
Confidence 999999999999999999999999999999999999987433 22221 111122334455556678888888777
Q ss_pred ----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCCCcch
Q 015351 224 ----KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLF--VAFAEFEERCKETERARCIYKFALDHIPKGRA 297 (408)
Q Consensus 224 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 297 (408)
++.++..++..+...|++++|.+.++++++..|+ +.... ..........++.+.+...++++++..|++..
T Consensus 258 ~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd---~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~ 334 (409)
T TIGR00540 258 HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD---DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK 334 (409)
T ss_pred HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChh
Confidence 6788999999999999999999999999999998 33321 11222223458889999999999999999832
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYE--DEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
..+...++.++.+.|+ +++|++.|+ .+++..|++.. +..+|.++.+.|+.++|.++|++++..
T Consensus 335 ~~ll~sLg~l~~~~~~--------~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 335 CCINRALGQLLMKHGE--------FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHHHccc--------HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2788899999999999 778999999 68888897665 569999999999999999999999764
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=8.3e-20 Score=178.09 Aligned_cols=347 Identities=10% Similarity=0.017 Sum_probs=236.0
Q ss_pred CHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015351 40 TAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE 119 (408)
Q Consensus 40 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (408)
.+.+.|+++++..|...+.....+ .+.-..+..+.|+..+++++...|........+|..+...|++++|+.+|+++++
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll-~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWL-QIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHH-HHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566778888888777633322111 1111224457899999999833344444555557799999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY 198 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 198 (408)
.+|+++.++..++..+...++.++|+..+++++..+|..... ..++.++...++..+|+..|+++++..|+ .+++..+
T Consensus 131 ~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~ 209 (822)
T PRK14574 131 KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNH 209 (822)
T ss_pred hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999888888999999999999999999999885444 66666766677777799999999999987 6665555
Q ss_pred HHHHHHhhhH------------------------------------------------HHHHHHHHHHHHh---CCCh-H
Q 015351 199 IKFELRYNEV------------------------------------------------ERARQIYERFVQC---HPKV-S 226 (408)
Q Consensus 199 ~~~~~~~~~~------------------------------------------------~~A~~~~~~al~~---~p~~-~ 226 (408)
...+.+.|-. +.|+.-++..+.. .|.. .
T Consensus 210 ~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~ 289 (822)
T PRK14574 210 LEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQA 289 (822)
T ss_pred HHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccch
Confidence 5444333221 2233334444431 1210 0
Q ss_pred ---------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHH
Q 015351 227 ---------------------------------------TWIKYAKFEMKMGEVDRARNVYERAVEKLADD---EEAEQL 264 (408)
Q Consensus 227 ---------------------------------------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 264 (408)
+....|..|...+++++|..+|++++...|.. +.....
T Consensus 290 ~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 290 DYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHH
Confidence 11133555566666667777776666544210 001222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCC-------------CcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Q 015351 265 FVAFAEFEERCKETERARCIYKFALDHIP-------------KGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 331 (408)
...+.-.+...+++++|..++++..+..| +.++.......+..+...|+ +.+|.+.++.
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd--------l~~Ae~~le~ 441 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND--------LPTAQKKLED 441 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 34455555667777777777777666333 22334455555555666666 7789999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhh
Q 015351 332 EVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406 (408)
Q Consensus 332 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~ 406 (408)
.+...|.|+.++..++.++...|.+..|...++.+....|++.. +-+..+... ...|++.+|..+
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~---------~~~~~~~~a-l~l~e~~~A~~~ 506 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI---------LERAQAETA-MALQEWHQMELL 506 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH---------HHHHHHHHH-HhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999876 334455555 367888888654
No 39
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=2.3e-19 Score=179.64 Aligned_cols=310 Identities=13% Similarity=0.065 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHhcC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CChHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVR-WNTGVWIKYAKWEESQKDFNRARSVWERALEVDY-RNHTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
+.|..+|+++.+..+ .+...|..+...|.+.|+++.|..+|+++.+... -+...|..+...+.+.|++++|..+|.++
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 445666666655432 2455666666666666666666666666665432 24566666666666666666666666666
Q ss_pred HHh--CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--C
Q 015351 152 VTL--LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH----WMPDQQGWLSYIKFELRYNEVERARQIYERFVQCH--P 223 (408)
Q Consensus 152 l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p 223 (408)
... .|+ ...|..++..+.+.|++++|..+|.++.. ..|+...|..++..+.+.|++++|.++|+++.+.. |
T Consensus 534 ~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 534 RSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 543 233 45666666666666666666666666654 24555566666666666666666666666666654 3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCcchHHHHH
Q 015351 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI-PKGRAEDLYR 302 (408)
Q Consensus 224 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~ 302 (408)
+...|..+...|.+.|++++|.++|+++.+..-.. +...|..++..+.+.|++++|..+++++.+.. +.+ ...|.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P--D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tyn 688 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP--DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYS 688 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHH
Confidence 45566666666666666666666666666552111 24566666666666677777777766666532 112 45666
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchhHHHH
Q 015351 303 KFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN-PMNYDIWFDYIRLEESVGNKERAREVYERAIAN--VPPAEEKRYW 379 (408)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~w 379 (408)
.++..+.+.|+ +++|..+|+.+.... ..+...|..++..+.+.|++++|.++|++.... .|+.. .|
T Consensus 689 sLI~ay~k~G~--------~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~---Ty 757 (1060)
T PLN03218 689 SLMGACSNAKN--------WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI---TY 757 (1060)
T ss_pred HHHHHHHhCCC--------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH---HH
Confidence 66666666666 556777777765431 225667777777777777777777777776543 23322 22
Q ss_pred HHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 380 QRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 380 ~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
..++ ..+ .+.|+++.|.++|
T Consensus 758 ~sLL-------~a~-~k~G~le~A~~l~ 777 (1060)
T PLN03218 758 SILL-------VAS-ERKDDADVGLDLL 777 (1060)
T ss_pred HHHH-------HHH-HHCCCHHHHHHHH
Confidence 2211 222 2567777777665
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=1.2e-20 Score=157.59 Aligned_cols=286 Identities=15% Similarity=0.108 Sum_probs=223.7
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 166 (408)
+|.++.-.+.+|.-++..|++..|+..|..|++.+|++..+.+..|.+|...|+-.-|+.-+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 56777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHH------------HHHHHhhhHHHHHHHHHHHHHhCC-ChHHHH
Q 015351 167 HMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYI------------KFELRYNEVERARQIYERFVQCHP-KVSTWI 229 (408)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~------------~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 229 (408)
.++.++|.++.|..-|...++.+|+ .++...++ .-....|+...|+....+.++..| +.+++.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 9999999999999999999999885 23332222 223345788999999999999999 688899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchH-HHHHHHHHHH
Q 015351 230 KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE-DLYRKFVAFE 308 (408)
Q Consensus 230 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~ 308 (408)
..+.+|...|++..|+.-++.+-+...+ +.+.++..+.+++..|+.+.++...+++++.+|+.... ..|..+-.+.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~D---nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQD---NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccc---chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999999888777 89999999999999999999999999999999987421 1222222221
Q ss_pred HHcCCchh-HHHHH--------------------------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015351 309 KQYGDREG-IEDAI--------------------------------------VGKRRFQYEDEVRKNPMNYDIWFDYIRL 349 (408)
Q Consensus 309 ~~~g~~~~-~~~~~--------------------------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 349 (408)
....+.+. +++-. +.+|+.....+|..+|+++.++...+..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 11111100 01111 5556666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 350 EESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 350 ~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
|.....++.|+.-|++|.+.++++..
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 66666666666666666666666553
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=2e-20 Score=178.82 Aligned_cols=264 Identities=12% Similarity=-0.025 Sum_probs=211.4
Q ss_pred cCCChHHHHHHHHH--HHH---ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc---------cCHHHHHHHHHHHH
Q 015351 87 VRWNTGVWIKYAKW--EES---QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN---------KFINHARNVWDRAV 152 (408)
Q Consensus 87 ~p~~~~~~~~la~~--~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al 152 (408)
.|.+.++|..+.+- ... .+++++|+..|+++++.+|+++.+|..+|.++... +++++|...+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 55666665554333 222 25678999999999999999999999999876643 34899999999999
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh-HHHHH
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV-STWIK 230 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~ 230 (408)
+.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..++++++.+|.. ..+..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999999963 34455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKL-ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEK 309 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 309 (408)
++.++...|++++|+..+++++... |+ .+..+..++.++...|++++|+..+.++....|.+ ...+..++..+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~---~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~--~~~~~~l~~~~~ 486 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQD---NPILLSMQVMFLSLKGKHELARKLTKEISTQEITG--LIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhcccc---CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh--HHHHHHHHHHHh
Confidence 5666777899999999999999886 55 67889999999999999999999999988777765 455666666666
Q ss_pred HcCCchhHHHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 310 QYGDREGIEDAIVGKRRFQYEDEVR---KNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 310 ~~g~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
..|+ +|...+++.++ ..|.++.. ...++.-.|+.+.+... +++.+.
T Consensus 487 ~~g~----------~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNSE----------RALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccHH----------HHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 6664 24444444443 34444333 67777778888888776 666543
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=1.5e-20 Score=179.64 Aligned_cols=214 Identities=13% Similarity=0.026 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQ---------KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINH 143 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~ 143 (408)
.++|+..|+++++.+|+++.+|..+|.++... +++++|...++++++.+|+++.+|..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 46799999999999999999999999887643 448999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 015351 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCH 222 (408)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 222 (408)
|+..|+++++.+|+++.+|..+|.++...|++++|+..++++++.+|. ...+..++.++...|++++|+..+++++...
T Consensus 357 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999 5555555666777899999999999999875
Q ss_pred -C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 223 -P-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 223 -p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
| ++..+..++.++...|++++|...+.+.....|. ....+..++..+...|+ +|...+++.++.
T Consensus 437 ~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 437 LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT---GLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch---hHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 5 4667888999999999999999999998887776 77888888888888874 788878776653
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-20 Score=166.62 Aligned_cols=267 Identities=15% Similarity=0.066 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
+....++++..++.+|.+...+.....++...|+..+-..+-.+.++..|+.+..|+..|-.|...|++.+|+..|.++.
T Consensus 260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat 339 (611)
T KOG1173|consen 260 FKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKAT 339 (611)
T ss_pred HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh
Confidence 34567888999999999999888877799999999998889999999999999999999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh-HHHHH
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV-STWIK 230 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~ 230 (408)
.++|....+|..+|..+...|..++|+.+|.+|-+..|. ..-.+.+|.-+.+.++++-|.++|.+|+.++|+. -+...
T Consensus 340 ~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 340 TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 999999999999999999999999999999999999998 4445556677778999999999999999999964 45777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHH
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKLADD----EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 306 (408)
+|-+.+..+.+.+|...|+.++...+.. ..-..++.++|..+++.+.+++|+..|++++...|.+ +..+...+-
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~--~~~~asig~ 497 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD--ASTHASIGY 497 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc--hhHHHHHHH
Confidence 8888889999999999999999544331 1124568999999999999999999999999999998 788999999
Q ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015351 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRL 349 (408)
Q Consensus 307 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 349 (408)
++...|+ +++|+..|.++|.+.|++..+--.++..
T Consensus 498 iy~llgn--------ld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 498 IYHLLGN--------LDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhcC--------hHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999 7789999999999999996554444443
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.89 E-value=4e-20 Score=162.64 Aligned_cols=230 Identities=11% Similarity=0.070 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRW----NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
+.++..+.++|...|. ....|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4478888888865443 356799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHH
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWI 229 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 229 (408)
++++++|++..+|..+|.++...|++++|+..|+++++.+|+......+..+....+++++|+..|.++....+. ..|.
T Consensus 123 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~-~~~~ 201 (296)
T PRK11189 123 SVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDK-EQWG 201 (296)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCc-cccH
Confidence 999999999999999999999999999999999999999998322222233445568899999999887755432 2232
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHH
Q 015351 230 KYAKFEMKMGEVDRARNVYERAV-------EKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYR 302 (408)
Q Consensus 230 ~~a~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 302 (408)
.+.+....|+...+ ..++.+. +..|. ..+.|+.+|.++...|++++|+..|++++...|.+ +++...
T Consensus 202 -~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~---~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~-~~e~~~ 275 (296)
T PRK11189 202 -WNIVEFYLGKISEE-TLMERLKAGATDNTELAER---LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN-FVEHRY 275 (296)
T ss_pred -HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch-HHHHHH
Confidence 34555556766544 2444444 33344 67899999999999999999999999999998865 355555
Q ss_pred HHHHHHHH
Q 015351 303 KFVAFEKQ 310 (408)
Q Consensus 303 ~~~~~~~~ 310 (408)
....+...
T Consensus 276 ~~~e~~~~ 283 (296)
T PRK11189 276 ALLELALL 283 (296)
T ss_pred HHHHHHHH
Confidence 55555443
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.89 E-value=4.9e-19 Score=177.29 Aligned_cols=309 Identities=15% Similarity=0.091 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDY-RNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
.|...|+.+.. .+...|..+...+.+.|+++.|..+|+++.+... .+...|..+...+.+.|++++|..+|+++..
T Consensus 424 eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 424 EAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34444444332 2456778888888899999999999999887543 4678899999999999999999999999987
Q ss_pred hCC-CchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CCChH
Q 015351 154 LLP-RVDQLWYKYIHMEEMLGNVAGARQIFERWMHW--MPDQQGWLSYIKFELRYNEVERARQIYERFVQC----HPKVS 226 (408)
Q Consensus 154 ~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~ 226 (408)
... -+...|..++..|.+.|++++|..+|.++.+. .|+...|..++..+.+.|++++|.++|+++... .|+..
T Consensus 501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 642 24788999999999999999999999998764 467888999999999999999999999999763 47778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCcchHHHHHHH
Q 015351 227 TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH--IPKGRAEDLYRKF 304 (408)
Q Consensus 227 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 304 (408)
.|..+...|.+.|++++|.++|+++.+..... +...|..++..+.+.|++++|..+|++..+. .|+ ...|..+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p--~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD---~~TynsL 655 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKG--TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD---EVFFSAL 655 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 89999999999999999999999998875332 5788999999999999999999999998875 344 5688888
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 015351 305 VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN-PMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYI 383 (408)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~ 383 (408)
+..+.+.|+ +++|..+|+.+.+.. +.+..+|..++..|.+.|++++|..+|++..+.. -.+....|+.
T Consensus 656 I~a~~k~G~--------~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-~~PdvvtyN~-- 724 (1060)
T PLN03218 656 VDVAGHAGD--------LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNA-- 724 (1060)
T ss_pred HHHHHhCCC--------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHH--
Confidence 898888898 667999999998764 3478899999999999999999999999986531 1222234444
Q ss_pred HHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 384 YLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 384 ~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+...+ .+.|++++|.++|+
T Consensus 725 -----LI~gy-~k~G~~eeAlelf~ 743 (1060)
T PLN03218 725 -----LITAL-CEGNQLPKALEVLS 743 (1060)
T ss_pred -----HHHHH-HHCCCHHHHHHHHH
Confidence 33334 37899999998873
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=6.5e-20 Score=153.31 Aligned_cols=271 Identities=11% Similarity=0.013 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.+..|.+.|..+++.+|++..+.+..|..|+..|+-..|+.-+.+++++-|+...+.+..|.+++++|+++.|..-|..
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCch---HHHHHHH------------HHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHH
Q 015351 151 AVTLLPRVD---QLWYKYI------------HMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQI 214 (408)
Q Consensus 151 al~~~p~~~---~~~~~~~------------~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~ 214 (408)
.++.+|++. ++...++ .-+...|+...|++.....+++.|. ..++...+.++...|+...|+.-
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~D 211 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHD 211 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 999999643 2222222 2234468999999999999999998 88888889999999999999999
Q ss_pred HHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH---------HHHHHcCChHHHHHH
Q 015351 215 YERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA---------EFEERCKETERARCI 284 (408)
Q Consensus 215 ~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~---------~~~~~~~~~~~A~~~ 284 (408)
++.+-+... +.+.++..+.+++..|+.+.++...+++++.+|++......|-.+- .-..+.+++.++++.
T Consensus 212 lk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ 291 (504)
T KOG0624|consen 212 LKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEA 291 (504)
T ss_pred HHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999988875 5788899999999999999999999999999998533322222211 122234555555555
Q ss_pred HHHHHhhCCCcch------------------------------------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 015351 285 YKFALDHIPKGRA------------------------------------EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ 328 (408)
Q Consensus 285 ~~~al~~~p~~~~------------------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~ 328 (408)
.++.++..|...+ +.++...+..+..... ++.|+..
T Consensus 292 ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~--------YD~AI~d 363 (504)
T KOG0624|consen 292 GEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM--------YDDAIHD 363 (504)
T ss_pred HHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH--------HHHHHHH
Confidence 6665555554211 3333333333332222 7889999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q 015351 329 YEDEVRKNPMNYDIWFDYIRL 349 (408)
Q Consensus 329 ~~~al~~~p~~~~~~~~~~~~ 349 (408)
|++|.+.+++|..+--.+-..
T Consensus 364 ye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 364 YEKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHHHhcCcccHHHHHHHHHH
Confidence 999999999998776554443
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=3.8e-19 Score=163.20 Aligned_cols=283 Identities=14% Similarity=0.109 Sum_probs=206.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHH-HHHHHhccCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHcCCh
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKY-AEVEMKNKFINHARNVWDRAVTLLPRVDQL-WYKYIHMEEMLGNV 175 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~ 175 (408)
|......|+++.|.+...++-...+ ++.+...+ +......|+++.|...|.++.+..|++... ....+.++...|++
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCH
Confidence 4444556888888877777655433 34444444 556688889999999999998888886433 33447888888999
Q ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hH--------HHHHHHHHHHHcCCHHHHH
Q 015351 176 AGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VS--------TWIKYAKFEMKMGEVDRAR 245 (408)
Q Consensus 176 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~--------~~~~~a~~~~~~~~~~~A~ 245 (408)
+.|...++++.+..|+ +.+...++.++.+.|++++|+.++.+..+..+. .. .+..+........+.+...
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999988888 888888888888889999999888888877642 11 2222222222333445555
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 015351 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325 (408)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A 325 (408)
++++..-+..|+ ++.++..++..+...|+.++|...++++++..|+ ..+...++.+.. ++ .+++
T Consensus 250 ~~w~~lp~~~~~---~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~---~~l~~l~~~l~~--~~--------~~~a 313 (398)
T PRK10747 250 RWWKNQSRKTRH---QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD---ERLVLLIPRLKT--NN--------PEQL 313 (398)
T ss_pred HHHHhCCHHHhC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---HHHHHHHhhccC--CC--------hHHH
Confidence 555555455555 6888888999999999999999999998885443 345554554422 55 4468
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhh
Q 015351 326 RFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRD 405 (408)
Q Consensus 326 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~ 405 (408)
....++.++.+|+++.+++.+|.++...|++++|++.|+++++..|++.. ++.++.+++ ..|+.++|..
T Consensus 314 l~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~----------~~~La~~~~-~~g~~~~A~~ 382 (398)
T PRK10747 314 EKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD----------YAWLADALD-RLHKPEEAAA 382 (398)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH----------HHHHHHHHH-HcCCHHHHHH
Confidence 88888888889999999999999999999999999999999988888763 556777775 8889888888
Q ss_pred hcC
Q 015351 406 VYQ 408 (408)
Q Consensus 406 ~~~ 408 (408)
+|+
T Consensus 383 ~~~ 385 (398)
T PRK10747 383 MRR 385 (398)
T ss_pred HHH
Confidence 763
No 48
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=9.7e-20 Score=179.86 Aligned_cols=290 Identities=13% Similarity=0.101 Sum_probs=232.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL--LPRVDQLWYKYIHM 168 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 168 (408)
..++..+...|.+.|++++|..+|++.. +.+...|..++..+.+.|+.++|..+|+++... .|+ ...+..++..
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 3456677888889999999999998763 457788999999999999999999999998765 344 5678888888
Q ss_pred HHHcCChHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHH
Q 015351 169 EEMLGNVAGARQIFERWMHWM--PDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARN 246 (408)
Q Consensus 169 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~ 246 (408)
+...|++++|.+++..+++.. |+..++..++..|.+.|++++|.++|+++.+ |+...|..++..|.+.|+.++|.+
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999988865 4477888899999999999999999988754 577789999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 015351 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRR 326 (408)
Q Consensus 247 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~ 326 (408)
+|+++.+..... +...+..+...+.+.|..++|..+|+...+..+.......|..++..+.+.|. +++|.
T Consensus 413 lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~--------~~eA~ 482 (697)
T PLN03081 413 MFERMIAEGVAP--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL--------LDEAY 482 (697)
T ss_pred HHHHHHHhCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC--------HHHHH
Confidence 999988764332 46778888888899999999999999987643322225678888899999998 66688
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhh
Q 015351 327 FQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406 (408)
Q Consensus 327 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~ 406 (408)
+.++++- ..| +..+|..+...+...|+.+.|..++++.+...|++.. .+..++..+ .+.|++++|.++
T Consensus 483 ~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~---------~y~~L~~~y-~~~G~~~~A~~v 550 (697)
T PLN03081 483 AMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN---------NYVVLLNLY-NSSGRQAEAAKV 550 (697)
T ss_pred HHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc---------chHHHHHHH-HhCCCHHHHHHH
Confidence 8877642 233 5678999999999999999999999999999988764 223344455 478999999987
Q ss_pred cC
Q 015351 407 YQ 408 (408)
Q Consensus 407 ~~ 408 (408)
++
T Consensus 551 ~~ 552 (697)
T PLN03081 551 VE 552 (697)
T ss_pred HH
Confidence 63
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=8.2e-19 Score=161.00 Aligned_cols=282 Identities=12% Similarity=0.138 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHccCHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHhccCHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKY-AKWEESQKDFNRARSVWERALEVDYRNH-TLWLKYAEVEMKNKFINHARNVW 148 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~ 148 (408)
|+.++|++...+.-+..+ ++.+...+ +......|+++.|...|+++.+.+|++. ......+.++...|+++.|...+
T Consensus 98 Gd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445567766655444322 24444444 6666899999999999999999999985 34445589999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HH--------HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015351 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQ--------GWLSYIKFELRYNEVERARQIYERFV 219 (408)
Q Consensus 149 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~--------~~~~~~~~~~~~~~~~~A~~~~~~al 219 (408)
+++.+..|+++.+...++.++...|++++|..++.+..+..+. +. .+..+........+.+...++++...
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999887654 22 22222222222233344444444443
Q ss_pred HhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchH
Q 015351 220 QCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 298 (408)
Q Consensus 220 ~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 298 (408)
+..| ++.+...++..+...|+.++|.+.++++++..|+ +.+...++.+ ..++++++....++.++..|++ +
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~----~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~--~ 328 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD----ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT--P 328 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC--H
Confidence 3334 5788999999999999999999999999996544 5555556655 4599999999999999999998 7
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 015351 299 DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANV 370 (408)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 370 (408)
.+...++.++...++ +++|+..|+++++..|++. .+..++.++...|+.++|..+|++++...
T Consensus 329 ~l~l~lgrl~~~~~~--------~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGE--------WQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 899999999999999 7789999999999999764 46789999999999999999999998864
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=3.3e-18 Score=166.98 Aligned_cols=320 Identities=12% Similarity=-0.009 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
|.++.|+..|+++++.+|.+......++.++...|+.++|+.++++++...|........+|.++...|++++|+.+|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55678999999999999999755558999999999999999999999944445555555558899999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWI 229 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 229 (408)
+++.+|+++.++..++.++...++.++|+..++++.+.+|....+..++.++...++..+|+..|+++++..|+ .+++.
T Consensus 128 aL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 128 SLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred HHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999544566666666677777799999999999994 55555
Q ss_pred HHHHHHHHcCCHH------------------------------------------------HHHHHHHHHHHHcCCcHHH
Q 015351 230 KYAKFEMKMGEVD------------------------------------------------RARNVYERAVEKLADDEEA 261 (408)
Q Consensus 230 ~~a~~~~~~~~~~------------------------------------------------~A~~~~~~al~~~p~~~~~ 261 (408)
.+...+...|-.. .|+.-++..+...+..+..
T Consensus 208 ~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~ 287 (822)
T PRK14574 208 NHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEA 287 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCcc
Confidence 5544444433222 2344444444422221100
Q ss_pred ---------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----cchH
Q 015351 262 ---------------------------------------EQLFVAFAEFEERCKETERARCIYKFALDHIPK----GRAE 298 (408)
Q Consensus 262 ---------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~ 298 (408)
.-+....|..|...+++++|..+|++++...|. ....
T Consensus 288 ~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 288 QADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch
Confidence 223445566677777888888888877765421 1001
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 299 DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP---------------MNYDIWFDYIRLEESVGNKERAREVY 363 (408)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~~~~~~~~~g~~~~A~~~~ 363 (408)
.....+...+...++ +++|..+.++.....| +..+....++..+...|++.+|.+.+
T Consensus 368 ~~~~~L~yA~ld~e~--------~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 368 LDADDLYYSLNESEQ--------LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred HHHHHHHHHHHhccc--------HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112222333334455 6778888888887444 23456667888889999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 364 ERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 364 ~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+..+...|.|+. +++.+|.++ ...|.+.+|...++
T Consensus 440 e~l~~~aP~n~~---------l~~~~A~v~-~~Rg~p~~A~~~~k 474 (822)
T PRK14574 440 EDLSSTAPANQN---------LRIALASIY-LARDLPRKAEQELK 474 (822)
T ss_pred HHHHHhCCCCHH---------HHHHHHHHH-HhcCCHHHHHHHHH
Confidence 999999999997 788999999 58899999988763
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=2.4e-19 Score=142.36 Aligned_cols=201 Identities=18% Similarity=0.149 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM 171 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 171 (408)
.+.+.+|.-|+..|++..|..-++++|+++|++..+|..++.++...|+.+.|.+.|++|+++.|++.++..++|.++..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhC--CC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q 015351 172 LGNVAGARQIFERWMHWM--PD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 172 ~~~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~ 247 (408)
+|.+++|...|++|+... |. .+.|.+++.|..+.|+++.|..+|+++++.+|+ +.....++..++..|++-.|+..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999999742 23 889999999999999999999999999999996 67789999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 248 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
+++.....+. ..+.+...+++....|+-+.+-.+=.+.-...|.+
T Consensus 196 ~~~~~~~~~~---~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 196 LERYQQRGGA---QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHhcccc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999888776 56667777888889999988888777777788876
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.86 E-value=5.7e-19 Score=150.98 Aligned_cols=201 Identities=17% Similarity=0.144 Sum_probs=183.5
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 169 (408)
....+..+|..+...|++++|...+++++..+|++..++..+|.++...|++++|+..|++++...|.+..++..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHH
Q 015351 170 EMLGNVAGARQIFERWMHWMP--D-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRAR 245 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~ 245 (408)
...|++++|...|++++...+ . ...+..++.++...|++++|...|.+++...|. ...+..++.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998643 2 678888999999999999999999999999885 678899999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 015351 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP 293 (408)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 293 (408)
..+++++...|. .+..+...+.++...|+.+.|..+.+.+....|
T Consensus 190 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 190 AYLERYQQTYNQ---TAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999998776 677788889999999999999998887766543
No 53
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=7.7e-19 Score=173.50 Aligned_cols=281 Identities=13% Similarity=0.123 Sum_probs=243.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD-YRNHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
+..+.|..+|+++. +.++..|..++..|.+.|++++|..+|++..... .-+...+..+...+.+.|++++|.+++.
T Consensus 273 g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 273 GDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 44577999998763 4578899999999999999999999999997642 2355688899999999999999999999
Q ss_pred HHHHhC-CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CChH
Q 015351 150 RAVTLL-PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCH--PKVS 226 (408)
Q Consensus 150 ~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~ 226 (408)
.+++.. +.+..++..++..|.+.|++++|..+|+++.+ |+...|..++..+.+.|+.++|+++|+++.+.. |+..
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 999885 45578899999999999999999999998754 677889999999999999999999999998764 7888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHH
Q 015351 227 TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306 (408)
Q Consensus 227 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 306 (408)
.+..+...+...|..++|.++|+.+.+..+-.+ +...|..++..+.+.|++++|.+++++.- ..|+ ..+|..++.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~---~~~~~~Ll~ 502 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAP-FKPT---VNMWAALLT 502 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCC---HHHHHHHHH
Confidence 899999999999999999999999987543211 35778899999999999999999987642 2333 678999999
Q ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 307 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
.+...|+ ++.|+..+++.+...|++...+..++.+|.+.|++++|.++++...+.
T Consensus 503 a~~~~g~--------~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 503 ACRIHKN--------LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHcCC--------cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999 566899999999999999999999999999999999999999987754
No 54
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.85 E-value=1.7e-18 Score=167.57 Aligned_cols=251 Identities=22% Similarity=0.448 Sum_probs=225.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCC----ChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE-VDYR----NHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
...-|++.+..+|++.-.|+.|..+....+++++|++++++||. +++. ..++|..+.+++...|.-+...++|+|
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999995 4554 358999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---hH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VS 226 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~ 226 (408)
|.+.+.- -.++..+..+|...+.+++|.++|+.+++...+ ..+|..|+.++.++++-+.|..++.+|++.-|. .+
T Consensus 1523 Acqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 9998743 578999999999999999999999999998886 999999999999999999999999999999984 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCcchHHHHHHHH
Q 015351 227 TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH-IPKGRAEDLYRKFV 305 (408)
Q Consensus 227 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~ 305 (408)
+.-..|.+.++.|+.+.++.+|+..+..+|. -.++|..|++..+++|+.+.++.+|++++.. .+...+..+|..|.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPK---RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPK---RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCcc---chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 7888999999999999999999999999999 7999999999999999999999999999984 34555778999999
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHH
Q 015351 306 AFEKQYGDREGIEDAIVGKRRFQYED 331 (408)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~A~~~~~~ 331 (408)
.++.+.|+...++.+ -.+|.++.+.
T Consensus 1679 eyEk~~Gde~~vE~V-KarA~EYv~s 1703 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYV-KARAKEYVES 1703 (1710)
T ss_pred HHHHhcCchhhHHHH-HHHHHHHHHH
Confidence 999999998877766 4455555544
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.3e-18 Score=147.47 Aligned_cols=286 Identities=10% Similarity=0.073 Sum_probs=241.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL 155 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 155 (408)
+..++-......|+|+.+...+|+++...|+..+|+-.|+++..++|......-.||.++...|+++.-..+-...+...
T Consensus 217 ~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 217 QTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred hHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence 34455566677899999999999999999999999999999999999999999999999999999998888888888887
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHH
Q 015351 156 PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAK 233 (408)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~ 233 (408)
.....-|+--+.......++..|+.+-+++++.+|. ...++..|.++...|+.++|+-.|+.+....| ..+.|..+..
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 777778888888888889999999999999999988 88888899999999999999999999999887 4688899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHH-HcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHc
Q 015351 234 FEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA-EFEE-RCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311 (408)
Q Consensus 234 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 311 (408)
+|...|++.+|...-..+++..|. +......+| .++. .-.--++|.+.++++++..|.. .......+.++...
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~---sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQN---SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVE 451 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhc---chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhh
Confidence 999999999999999999999888 566666664 3333 2334588999999999999986 55666667777766
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 312 GDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 312 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
|... .++.++++.+...| +..+...+|+++...+.+++|.+.|..|++.+|.+..
T Consensus 452 g~~~--------D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 452 GPTK--------DIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred Cccc--------hHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 6633 48889999998887 4578889999999999999999999999999998864
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=3.6e-18 Score=156.96 Aligned_cols=294 Identities=16% Similarity=0.143 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV-DYRNHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
.+..++...++++++.+|+|+.+.+.++..|..+++++.|.....++++. ...++..|..++.+....+++.+|+.+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999 55678999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH---------HHHHHHhhhHHHHHHHHHHHH
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY---------IKFELRYNEVERARQIYERFV 219 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~---------~~~~~~~~~~~~A~~~~~~al 219 (408)
-++...|+|...-..-+.+....++.++|.......+..-.. ..+-..+ +.+....++..+|.+.++++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 999999998888887888888899999998887777654321 1111111 111111223333444433332
Q ss_pred Hh--------C-----C--------C------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 015351 220 QC--------H-----P--------K------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272 (408)
Q Consensus 220 ~~--------~-----p--------~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 272 (408)
.. . | + ..+|...+..+...++.++|..++.++-..+|. .+.+|+..|..+
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l---~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL---SASVYYLRGLLL 694 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh---hHHHHHHhhHHH
Confidence 21 0 1 1 246888899999999999999999999999988 899999999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015351 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES 352 (408)
Q Consensus 273 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 352 (408)
...|...+|...|..++..+|++ +.....++.++.+.|+.. ....+.+...+++.+|.++++|+.+|.+..+
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G~~~------la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELGSPR------LAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhCCcc------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 778888999999999755 3345568999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchh
Q 015351 353 VGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 353 ~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
.|+.++|.++|.-|++..+.+|-
T Consensus 767 ~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred ccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999888873
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.5e-18 Score=145.66 Aligned_cols=299 Identities=10% Similarity=0.045 Sum_probs=254.8
Q ss_pred hcCCChHHHH---HHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHH
Q 015351 86 RVRWNTGVWI---KYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLW 162 (408)
Q Consensus 86 ~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (408)
..|.....|. .+|.++.....+..+..++-......|+|+.+...+|.++...|+.++|+..|+++..++|.....-
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 3455554443 2344444455566677778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCC
Q 015351 163 YKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGE 240 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~ 240 (408)
-.||.++.+.|+++....+-...+..... ..-|+.-+.+....+++..|+.+-+++++.+| +.+.++.-|.++...|+
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc
Confidence 99999999999999999999999888755 77788888888888999999999999999998 57899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHH-HHHHHcCCchhHHH
Q 015351 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFV-AFEKQYGDREGIED 319 (408)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~g~~~~~~~ 319 (408)
.++|.-.|+.+....|. ..+.|..+...|...|++.+|..+-+.+++..|.+ ......++ .++. .++..
T Consensus 350 ~~~A~IaFR~Aq~Lap~---rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s--A~~LtL~g~~V~~--~dp~~--- 419 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPY---RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS--ARSLTLFGTLVLF--PDPRM--- 419 (564)
T ss_pred hHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc--hhhhhhhcceeec--cCchh---
Confidence 99999999999999988 78999999999999999999999999999999887 33433332 2221 12111
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCC
Q 015351 320 AIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGD 399 (408)
Q Consensus 320 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~ 399 (408)
.++|.+.+++++.+.|....+...++.++..-|.+..++.++++++...|+.. +...+|++. ...+.
T Consensus 420 --rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~----------LH~~Lgd~~-~A~Ne 486 (564)
T KOG1174|consen 420 --REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN----------LHNHLGDIM-RAQNE 486 (564)
T ss_pred --HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH----------HHHHHHHHH-HHhhh
Confidence 56899999999999999999999999999999999999999999999999876 566678877 47788
Q ss_pred hhHHhhhc
Q 015351 400 MERTRDVY 407 (408)
Q Consensus 400 ~~~A~~~~ 407 (408)
+.+|.+.|
T Consensus 487 ~Q~am~~y 494 (564)
T KOG1174|consen 487 PQKAMEYY 494 (564)
T ss_pred HHHHHHHH
Confidence 88887766
No 58
>PLN03077 Protein ECB2; Provisional
Probab=99.85 E-value=4.2e-18 Score=172.25 Aligned_cols=306 Identities=13% Similarity=0.047 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHhcC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVR-WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
+.|..+++.+++... .+..++..+...|.+.|++++|.++|++..+ .+...|..+...+...|+.++|+.+|++++
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444322 2334445555555555555555555554332 233345555555555555555555555554
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHH
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM--PDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIK 230 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 230 (408)
...+-+...+..+...+...|+.+.+.+++..+++.. ++..+...+...|.+.|++++|..+|+.. .|+...|..
T Consensus 483 ~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~ 559 (857)
T PLN03077 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNI 559 (857)
T ss_pred hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHH
Confidence 4322223334444444444444444444444444432 22334455667777788888888888776 567778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 310 (408)
++..|...|+.++|.++|+++.+..... +...+..+...+.+.|.+++|..+|+...+..+-......|..++.++.+
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNP--DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC--CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 8888888888888888888877653221 35566667777888888888888888877443322225778888888888
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 015351 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYA 390 (408)
Q Consensus 311 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a 390 (408)
.|+ +++|..++++. ...| ++.+|..+...+...|+.+.+....++.++..|++.. .+..++
T Consensus 638 ~G~--------~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~---------~y~ll~ 698 (857)
T PLN03077 638 AGK--------LTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG---------YYILLC 698 (857)
T ss_pred CCC--------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc---------hHHHHH
Confidence 888 55677777765 2344 5678888888888888888888888888888888775 233344
Q ss_pred HHhhhhcCChhHHhhhc
Q 015351 391 LYEELDAGDMERTRDVY 407 (408)
Q Consensus 391 ~~~e~~~g~~~~A~~~~ 407 (408)
..| ...|++++|.++.
T Consensus 699 n~y-a~~g~~~~a~~vr 714 (857)
T PLN03077 699 NLY-ADAGKWDEVARVR 714 (857)
T ss_pred HHH-HHCCChHHHHHHH
Confidence 455 3778888887764
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=1.7e-17 Score=152.55 Aligned_cols=318 Identities=13% Similarity=0.098 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCChHHHHHHHHHH-HhccCHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD--YRNHTLWLKYAEVE-MKNKFINHARNV 147 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~-~~~~~~~~A~~~ 147 (408)
+.+..+.+.||+++..--.....|..++..+...|.-..|+.+.+..+... |.++......+.++ ...+..++++.+
T Consensus 337 g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldY 416 (799)
T KOG4162|consen 337 GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDY 416 (799)
T ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHH
Confidence 566778889999988888888899999999999999999999999998877 77776666555544 445666666666
Q ss_pred HHHHHHhCCC-----chHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHH
Q 015351 148 WDRAVTLLPR-----VDQLWYKYIHMEEML-----------GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVER 210 (408)
Q Consensus 148 ~~~al~~~p~-----~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~ 210 (408)
-.+++..... .+..+..+|-.|-.+ ....+++..++++++.+|+ +.+.+.++..+..+++.+.
T Consensus 417 A~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~s 496 (799)
T KOG4162|consen 417 AQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTS 496 (799)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHH
Confidence 6666663211 123344444433221 1124566677777777666 6666666666666667777
Q ss_pred HHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH----------------------------
Q 015351 211 ARQIYERFVQCHP--KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE---------------------------- 260 (408)
Q Consensus 211 A~~~~~~al~~~p--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------------------- 260 (408)
|....+++++.++ +...|..++.++...+++.+|+.+...+++..|++..
T Consensus 497 Al~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 497 ALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 7777777777654 3556777777766667777777776666666655100
Q ss_pred ------------------------------------------------------------------------HHHHHHHH
Q 015351 261 ------------------------------------------------------------------------AEQLFVAF 268 (408)
Q Consensus 261 ------------------------------------------------------------------------~~~~~~~~ 268 (408)
...+|...
T Consensus 577 we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwlla 656 (799)
T KOG4162|consen 577 WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLA 656 (799)
T ss_pred HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHH
Confidence 03455566
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015351 269 AEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIR 348 (408)
Q Consensus 269 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 348 (408)
+..+...++.++|..++.++-+.+|.. ..+|...+......|. +.+|...|..++..+|+++.+...+|.
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~~~~~~--------~~EA~~af~~Al~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLLEVKGQ--------LEEAKEAFLVALALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHHHHHHh--------hHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 666666666666666666666666654 4566666666666665 667999999999999999999999999
Q ss_pred HHHHcCCHHHHHH--HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 349 LEESVGNKERARE--VYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 349 ~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
++.+.|+..-|.. ++..|++.+|.+++ .|..+|+... +.|+.+.|.+.|+
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~e---------aW~~LG~v~k-~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHE---------AWYYLGEVFK-KLGDSKQAAECFQ 778 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHH-HccchHHHHHHHH
Confidence 9999998877777 99999999999997 7999999995 9999999998874
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=3e-18 Score=150.75 Aligned_cols=225 Identities=14% Similarity=0.093 Sum_probs=112.0
Q ss_pred cCHHHHHHHHHHHHhccC----CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHH
Q 015351 105 KDFNRARSVWERALEVDY----RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ 180 (408)
Q Consensus 105 g~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 180 (408)
+..+.++..+.+++...| ..+..|+.+|.++...|+.++|+..|+++++.+|+++.+|..+|.++...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555555555554222 1234455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH
Q 015351 181 IFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE 259 (408)
Q Consensus 181 ~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 259 (408)
.|+++++++|+ ..+|..+|.++...|++++|+..|+++++.+|+......+..+....+++++|...|.+++...+.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~-- 197 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDK-- 197 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCc--
Confidence 55555555555 445555555555555555555555555555443221111111222334444444444443332211
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCC
Q 015351 260 EAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN 339 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 339 (408)
..|. .+......|+...+ .. +..+...++..++..|..
T Consensus 198 ---~~~~-~~~~~~~lg~~~~~-~~-------------------------------------~~~~~~~~~~~~~l~~~~ 235 (296)
T PRK11189 198 ---EQWG-WNIVEFYLGKISEE-TL-------------------------------------MERLKAGATDNTELAERL 235 (296)
T ss_pred ---cccH-HHHHHHHccCCCHH-HH-------------------------------------HHHHHhcCCCcHHHHHHH
Confidence 1111 12222222332221 11 222333334444555666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 015351 340 YDIWFDYIRLEESVGNKERAREVYERAIANVPPA 373 (408)
Q Consensus 340 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 373 (408)
.++|+.+|.++...|++++|+..|++|++.+|.+
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 6777777777777777777777777777777643
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=2.9e-18 Score=136.22 Aligned_cols=204 Identities=17% Similarity=0.120 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELR 204 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 204 (408)
.+.+.+|.-|+..|++..|..-+++|++.+|++..+|..++.+|...|+.+.|.+.|++|+++.|+ .++..+||-++..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 678889999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhHHHHHHHHHHHHHhC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH
Q 015351 205 YNEVERARQIYERFVQCH--P-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERA 281 (408)
Q Consensus 205 ~~~~~~A~~~~~~al~~~--p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 281 (408)
+|.+++|...|++++... + ....|.+++.|..+.|+++.|...|+++++.+|. .+.....++...+..|++..|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~---~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ---FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC---CChHHHHHHHHHHhcccchHH
Confidence 999999999999999864 2 3578999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 015351 282 RCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342 (408)
Q Consensus 282 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 342 (408)
+..+++.....+.. ......-+.+....|+.+ .+-++=.+.....|..++.
T Consensus 193 r~~~~~~~~~~~~~--A~sL~L~iriak~~gd~~--------~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGGAQ--AESLLLGIRIAKRLGDRA--------AAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhccccc--HHHHHHHHHHHHHhccHH--------HHHHHHHHHHHhCCCcHHH
Confidence 99999998876644 445555678888999954 2444444555677877654
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=4.4e-19 Score=147.46 Aligned_cols=261 Identities=16% Similarity=0.183 Sum_probs=225.5
Q ss_pred HccCHHHHHHHHHHHHhcc---CC-----ChHHH--HHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 015351 103 SQKDFNRARSVWERALEVD---YR-----NHTLW--LKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~---p~-----~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 172 (408)
..+|+..|-......++.+ |. ..+.| ..+|.++...|-+.+|...++.+++..|. ++.+..+.++|.+.
T Consensus 191 henDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ri 269 (478)
T KOG1129|consen 191 HENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRI 269 (478)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHh
Confidence 3456666665544444321 21 12333 56899999999999999999999999987 78889999999999
Q ss_pred CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 173 GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYER 250 (408)
Q Consensus 173 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~ 250 (408)
.++..|+.+|...+...|. .......+.++...++.++|.++|+.+++..| +.+..--.+.-|+-.++++-|..+|++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 9999999999999999998 77788889999999999999999999999998 466665666667778999999999999
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 015351 251 AVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP-KGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQY 329 (408)
Q Consensus 251 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~ 329 (408)
.++.... ++++++++|.+++-.++++-++..|++++.... +....++|.+++.+....|+ +..|...|
T Consensus 350 iLqmG~~---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD--------~nlA~rcf 418 (478)
T KOG1129|consen 350 ILQMGAQ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD--------FNLAKRCF 418 (478)
T ss_pred HHHhcCC---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc--------hHHHHHHH
Confidence 9999887 899999999999999999999999999998654 23357899999999999999 56699999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 330 EDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 330 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
+-++..+|++.+++.+++.+..+.|+.++|+.++..|-...|+-.+
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 9999999999999999999999999999999999999999998665
No 63
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.8e-17 Score=145.62 Aligned_cols=202 Identities=12% Similarity=0.084 Sum_probs=163.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh--------HHHHHHHHHH
Q 015351 164 KYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKV--------STWIKYAKFE 235 (408)
Q Consensus 164 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~a~~~ 235 (408)
.+|.......+++.|++.|.+++.++.+...+...+.++...|.+...+.....+++..... .....+|..+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444457788999999999999447778888899999999999998888888765421 2233456677
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHH-----------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 015351 236 MKMGEVDRARNVYERAVEKLADDEE-----------------------AEQLFVAFAEFEERCKETERARCIYKFALDHI 292 (408)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~p~~~~-----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 292 (408)
...++++.++..|++++...-.... ...--..-|.-+.+.|++..|+..|.++|..+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 7788999999999998876543100 11122233566677899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 293 PKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 293 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
|++ ..+|.+.+.++...|. +..|+...+.+++++|+....|+.-|.++....++++|.+.|+.+++.+|+
T Consensus 389 P~D--a~lYsNRAac~~kL~~--------~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 389 PED--ARLYSNRAACYLKLGE--------YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred Cch--hHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 998 7899999999999999 667999999999999999999999999999999999999999999999999
Q ss_pred chh
Q 015351 373 AEE 375 (408)
Q Consensus 373 ~~~ 375 (408)
+.+
T Consensus 459 ~~e 461 (539)
T KOG0548|consen 459 NAE 461 (539)
T ss_pred hHH
Confidence 887
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=150.09 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=220.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN 174 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 174 (408)
..+|++|...|-+.+|.+.++..++..| .++.+..+..+|....++..|+.+|...+...|.+.......++++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4589999999999999999999999776 478899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015351 175 VAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAV 252 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al 252 (408)
.++|.++|+.+++.+|. .+.....+.-+.-.++++-|+.+|++.++..- +++++.++|.+++-.++++-++..|++++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 99999999999999998 66655666556667899999999999999874 78999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 015351 253 EKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332 (408)
Q Consensus 253 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 332 (408)
.....+....++|++++.+....|++.-|...|+-++..+|++ .+.+.+++.+..+.|+ +..|+.++..+
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h--~ealnNLavL~~r~G~--------i~~Arsll~~A 455 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH--GEALNNLAVLAARSGD--------ILGARSLLNAA 455 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch--HHHHHhHHHHHhhcCc--------hHHHHHHHHHh
Confidence 9876656689999999999999999999999999999998887 7899999999999999 66799999999
Q ss_pred HhhCCCCHHHHHHHHH
Q 015351 333 VRKNPMNYDIWFDYIR 348 (408)
Q Consensus 333 l~~~p~~~~~~~~~~~ 348 (408)
-...|+-.+.-++++.
T Consensus 456 ~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 456 KSVMPDMAEVTTNLQF 471 (478)
T ss_pred hhhCccccccccceeE
Confidence 9999987766665543
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.83 E-value=1e-16 Score=144.88 Aligned_cols=221 Identities=13% Similarity=0.161 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
.+.+..+..+.+|+.+|.+++..-..|-.+...|+.++|......++..++.+.-.|..+|.++....++++|+.+|+.|
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34567778888888899999888888888888899999999999999988888889999999988888999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---CChH-
Q 015351 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCH---PKVS- 226 (408)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~- 226 (408)
+...|++..+|..++.+..++++++.....-.+.++..|. -..|..++....-.|++..|..+.+...+.. |+..
T Consensus 102 l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 9999999999999988888889998888888888888888 7788888888888888888888877766554 3321
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 227 -----TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 227 -----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
..+-....+.+.|.+++|.+.+..--...-+ ...+...-+.++++.+++++|..+|...+..+|++
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD---KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 2222233344455555444444332222111 33333444555555555555555555555555554
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=8.4e-17 Score=133.86 Aligned_cols=282 Identities=12% Similarity=0.159 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-----hHHHHHHHHHHHhccCHHHH
Q 015351 70 ADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-----HTLWLKYAEVEMKNKFINHA 144 (408)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A 144 (408)
.+..++|...|-.+++.+|...++.+.+|+++.+.|..+.|+.+-+..+. .|+- ..+...+|.-|+..|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34457899999999999999999999999999999999999999988775 3443 36778899999999999999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015351 145 RNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFELRYNEVERARQIYERF 218 (408)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~a 218 (408)
..+|...+...---..+...+..+|....++++|+++-++..++.+. ...+..++..+....+.+.|+..++++
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999988766566788999999999999999999999999998886 556777788788888999999999999
Q ss_pred HHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcch
Q 015351 219 VQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA 297 (408)
Q Consensus 219 l~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 297 (408)
++.+|+ ..+-+.+|.++...|+++.|.+.++.+++.+|+- .+.+...+..+|...|+.++....+.++++..+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y--l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~- 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY--LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD- 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-
Confidence 999985 6788999999999999999999999999999874 578888999999999999999999999999888753
Q ss_pred HHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 015351 298 EDLYRKFVAFEK-QYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES---VGNKERAREVYERAI 367 (408)
Q Consensus 298 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al 367 (408)
+-..+.++.. ..| .+.|.....+-+...|+ ......+..+... -|...+....+...+
T Consensus 284 --~~l~l~~lie~~~G---------~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 284 --AELMLADLIELQEG---------IDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred --HHHHHHHHHHHhhC---------hHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3333444333 334 34578888888888885 3444555555432 233444455555544
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=1.5e-17 Score=142.23 Aligned_cols=201 Identities=15% Similarity=0.138 Sum_probs=179.7
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE 202 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 202 (408)
....+..+|..+...|++++|+..+++++...|++..++..++.++...|++++|...|+++++..|. ...+..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q 015351 203 LRYNEVERARQIYERFVQCHP---KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETE 279 (408)
Q Consensus 203 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 279 (408)
...|++++|...|++++...+ ....+..++.++...|++++|...+.+++...|. .+..+..++.++...|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---ChHHHHHHHHHHHHcCCHH
Confidence 999999999999999998643 3567888999999999999999999999999998 6888999999999999999
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC
Q 015351 280 RARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337 (408)
Q Consensus 280 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 337 (408)
+|...+++++...|.+ ...+...+.+....|+ .++|+...+.+....|
T Consensus 187 ~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 187 DARAYLERYQQTYNQT--AESLWLGIRIARALGD--------VAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhhCc
Confidence 9999999999986665 5666677888888888 4457777776665543
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.3e-18 Score=153.65 Aligned_cols=251 Identities=15% Similarity=0.125 Sum_probs=210.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN 174 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 174 (408)
+.-|..+++.|++.+|.-.|+.+++.+|.+.++|..||......++-..|+..++++++++|++..+...++-.|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHH----H-----HHHHhhhHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHH
Q 015351 175 VAGARQIFERWMHWMPDQQGWLSYI----K-----FELRYNEVERARQIYERFVQCHP---KVSTWIKYAKFEMKMGEVD 242 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~----~-----~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~a~~~~~~~~~~ 242 (408)
-..|..++.+-+...|.. .|...+ . -......+....++|-.+....| ++++...+|-+|.-.|+|+
T Consensus 369 q~~Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 999999999999887651 111110 0 00111224455566666666555 6889999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHH
Q 015351 243 RARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322 (408)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (408)
+|..+|+.||...|. +..+|..||-.+....+.++|+..|++|+++.|.. +.++..++-.+...|. +
T Consensus 448 raiDcf~~AL~v~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y--VR~RyNlgIS~mNlG~--------y 514 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN---DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY--VRVRYNLGISCMNLGA--------Y 514 (579)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe--eeeehhhhhhhhhhhh--------H
Confidence 999999999999999 89999999999999999999999999999999996 7899999999999998 6
Q ss_pred HHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCCHHHH
Q 015351 323 GKRRFQYEDEVRKNPM----------NYDIWFDYIRLEESVGNKERA 359 (408)
Q Consensus 323 ~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~g~~~~A 359 (408)
++|.++|-.||...+. +..+|-.+-.++.-.++.+-+
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6799999999987654 124666666666556655543
No 69
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.5e-17 Score=142.62 Aligned_cols=317 Identities=12% Similarity=0.059 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
++++.|+..|..+|..+|.+..++......+.+.|++++|.+--.+.++++|.-+..|...|......|++++|+..|.+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 44577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcC-----------------Ch----HHHHHHHHHHH---HhC-----------------
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLG-----------------NV----AGARQIFERWM---HWM----------------- 189 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~-----------------~~----~~A~~~~~~al---~~~----------------- 189 (408)
.|..+|++..+...++..+.... +. --....|...+ +.+
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 99999999988888887763220 00 00011111111 111
Q ss_pred ------------------------C---------C-------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 015351 190 ------------------------P---------D-------------QQGWLSYIKFELRYNEVERARQIYERFVQCHP 223 (408)
Q Consensus 190 ------------------------p---------~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 223 (408)
| . ..-...+|+......+++.|++.|..++....
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~ 255 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELAT 255 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhh
Confidence 1 0 11234566666677789999999999999985
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHH
Q 015351 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA----EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAED 299 (408)
Q Consensus 224 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 299 (408)
+...+...+.++...|.+.+.+.....+++........ ......+|..+...++++.|+..|.+++...-. +.
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---~~ 332 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---PD 332 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---HH
Confidence 55668888999999999999999999988876541111 112223444666678999999999999875433 11
Q ss_pred HHHHHHH---------------------------HHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015351 300 LYRKFVA---------------------------FEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES 352 (408)
Q Consensus 300 ~~~~~~~---------------------------~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 352 (408)
+....-. -....|+ +..|+..|.+++..+|+++.++.+.+-+|.+
T Consensus 333 ~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd--------y~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 333 LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD--------YPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC--------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 2111111 1222333 7789999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 353 VGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 353 ~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
.|++..|+...+.+++.+|+..- .|+.-|..+. .+.++++|.+.|+
T Consensus 405 L~~~~~aL~Da~~~ieL~p~~~k---------gy~RKg~al~-~mk~ydkAleay~ 450 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELDPNFIK---------AYLRKGAALR-AMKEYDKALEAYQ 450 (539)
T ss_pred HhhHHHHHHHHHHHHhcCchHHH---------HHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999988664 4555566663 6778888887763
No 70
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.82 E-value=1.3e-17 Score=161.63 Aligned_cols=239 Identities=26% Similarity=0.457 Sum_probs=192.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCC-----HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015351 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW-MPD-----QQGWLSYIKFELRYNEVERARQIYER 217 (408)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~ 217 (408)
..+-|++.+..+|++.-.|..|..+....++.++|+++.++|+.. ++. ..+|..|.+++...|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 445667777777777777777777777777777777777777763 332 56888888888888888888889999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcch
Q 015351 218 FVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA 297 (408)
Q Consensus 218 al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 297 (408)
|.+.+....++..+..+|...+.+++|.++|+..++.+.. ...+|..|+.+++++++-+.|+.++.+|++..|....
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 9888776788889999999999999999999999998886 7899999999999999999999999999999898666
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchhH
Q 015351 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANV-PPAEEK 376 (408)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 376 (408)
..+....++++.+.|+.+ +++.+|+-.+...|.-.++|..|++...+.|+.+.++.+|+|++... +.....
T Consensus 1600 v~~IskfAqLEFk~GDae--------RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAE--------RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred HHHHHHHHHHHhhcCCch--------hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 888999999999999944 58889999999999999999999999999999999999999998753 222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCChh
Q 015351 377 RYWQRYIYLWINYALYEELDAGDME 401 (408)
Q Consensus 377 ~~w~~~~~l~~~~a~~~e~~~g~~~ 401 (408)
.+ ..-|+.| |.++|+-.
T Consensus 1672 ff----fKkwLey----Ek~~Gde~ 1688 (1710)
T KOG1070|consen 1672 FF----FKKWLEY----EKSHGDEK 1688 (1710)
T ss_pred HH----HHHHHHH----HHhcCchh
Confidence 22 2346655 34677744
No 71
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.81 E-value=5.2e-18 Score=159.42 Aligned_cols=314 Identities=15% Similarity=0.127 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHH----------------
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEM---------------- 136 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~---------------- 136 (408)
...|...|-++++.+|+-..+|..+|.+|....|...|.++|.+|.+++|.+...|-..+..+.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4467788888888888888888888888888778888888888888888877655555544444
Q ss_pred --------------------hccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHH
Q 015351 137 --------------------KNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGW 195 (408)
Q Consensus 137 --------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 195 (408)
+.++...|+.-|+.+++.+|.+.+.|..+|..|...|.+..|..+|.++..+.|. .-..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 4467777888888888888888888888888888888888888888888888887 4444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-----------
Q 015351 196 LSYIKFELRYNEVERARQIYERFVQCHPK--------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLA----------- 256 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------- 256 (408)
+..+.+....|.+.+|+..+...+..... .+.++..+..+.-.|-..+|..++++.++.+-
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 55566677788888888888887765431 23344444444444544455555554443320
Q ss_pred ------------------CcH--------------------------------------HHHHHHHHHHHHHHH------
Q 015351 257 ------------------DDE--------------------------------------EAEQLFVAFAEFEER------ 274 (408)
Q Consensus 257 ------------------~~~--------------------------------------~~~~~~~~~~~~~~~------ 274 (408)
+-+ ..+..|+++|.-|.+
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC
Confidence 000 003446666665554
Q ss_pred --cCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015351 275 --CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES 352 (408)
Q Consensus 275 --~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 352 (408)
..+...|+.++.++++.+.++ ..+|..++-+ ...|+ +.-|...|-+.+..+|.+...|.++|.++.+
T Consensus 794 et~~~~~~Ai~c~KkaV~L~ann--~~~WnaLGVl-sg~gn--------va~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLCANN--EGLWNALGVL-SGIGN--------VACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHhhcc--HHHHHHHHHh-hccch--------hhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 234457888899999888776 6788888877 44455 5568888999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 353 VGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 353 ~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
+.+++.|...|.++...+|.+.. -|+.-+.+-+ ..|++-++..+|
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~---------~WlG~Ali~e-avG~ii~~~~lf 907 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLV---------QWLGEALIPE-AVGRIIERLILF 907 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhH---------HHHHHHHhHH-HHHHHHHHHHHH
Confidence 99999999999999999998875 4777777775 677766665544
No 72
>PLN03077 Protein ECB2; Provisional
Probab=99.81 E-value=2.7e-17 Score=166.36 Aligned_cols=279 Identities=10% Similarity=0.060 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+..+.|..+|+++.+ .+...|..+...+...|+.++|..+|++.+...+-+...+..+...+...|+.+.+.+++..
T Consensus 438 g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 438 KCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 445679999998754 45678999999999999999999999999876566677788888889999999999999999
Q ss_pred HHHhC-CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CChHH
Q 015351 151 AVTLL-PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCH--PKVST 227 (408)
Q Consensus 151 al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~ 227 (408)
+++.. ..+..+...+...|.+.|+.++|..+|... .|+...|..++..+.+.|+.++|+.+|+++.+.. |+...
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 98874 234566778899999999999999999986 6778999999999999999999999999998754 77778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHH
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAF 307 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 307 (408)
+..+...+.+.|.+++|.++|+.+.+..+-.+ +...+..++.++.+.|++++|.+++++. ...|+ ..+|..++..
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd---~~~~~aLl~a 666 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD---PAVWGALLNA 666 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC---HHHHHHHHHH
Confidence 88888889999999999999999986543321 4678999999999999999999999875 23344 6889999998
Q ss_pred HHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015351 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIA 368 (408)
Q Consensus 308 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 368 (408)
+...|+ .+.+....+++++.+|+++..+..++++|...|++++|.++.+...+
T Consensus 667 c~~~~~--------~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 667 CRIHRH--------VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHcCC--------hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 888888 55578888999999999999999999999999999999999988765
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=154.78 Aligned_cols=240 Identities=15% Similarity=0.115 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
|....|.-.||.+++.+|.+.++|..||.....+++-..|+..+++|++++|++..+...||..|...|.-..|...+.+
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~ 378 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDK 378 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33557999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEM---------LGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERF 218 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~a 218 (408)
.+...|... |...+..-.. ...+....+.|-.+....|. +++...+|-++...|+|++|+.+|+.|
T Consensus 379 Wi~~~p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~A 456 (579)
T KOG1125|consen 379 WIRNKPKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAA 456 (579)
T ss_pred HHHhCccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHH
Confidence 999887532 2111100011 11233455667777777773 999999999999999999999999999
Q ss_pred HHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc--
Q 015351 219 VQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG-- 295 (408)
Q Consensus 219 l~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 295 (408)
+...|+ ..+|..+|..+....+.++|+..|.+|++.-|. ...+++++|..++..|.|++|.++|-.||...+.+
T Consensus 457 L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 457 LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG---YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 999995 678999999999999999999999999999999 89999999999999999999999999999865441
Q ss_pred --c----hHHHHHHHHHHHHHcCCch
Q 015351 296 --R----AEDLYRKFVAFEKQYGDRE 315 (408)
Q Consensus 296 --~----~~~~~~~~~~~~~~~g~~~ 315 (408)
. ...+|..+-......+..+
T Consensus 534 ~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 534 HNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cccCCcchHHHHHHHHHHHHHcCCch
Confidence 1 1357777776666555544
No 74
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=1.1e-16 Score=140.41 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCH--HHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQK-DFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFI--NHARNVWD 149 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~ 149 (408)
.++|...++++|+.+|.+..+|...+.++...| ++++++..++++++.+|++..+|...+.+....|.. ++++.++.
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 356999999999999999999999999999998 689999999999999999999999999998888864 77899999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh---hh----HHHHHHHHHHHHHh
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRY---NE----VERARQIYERFVQC 221 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~---~~----~~~A~~~~~~al~~ 221 (408)
++++.+|++..+|...+.++...|+++++++.+.++++.+|. ..+|...+.+.... |. .++++.+..+++..
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 99999999877655 22 35788888999999
Q ss_pred CC-ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q 015351 222 HP-KVSTWIKYAKFEMK----MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274 (408)
Q Consensus 222 ~p-~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 274 (408)
+| +..+|..++.++.. .++..+|.+++.+++...|. ++.+...+++++..
T Consensus 213 ~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~---s~~al~~l~d~~~~ 267 (320)
T PLN02789 213 NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN---HVFALSDLLDLLCE 267 (320)
T ss_pred CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC---cHHHHHHHHHHHHh
Confidence 99 47889999888877 34567799999999888777 67788888888875
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=9.7e-16 Score=127.61 Aligned_cols=260 Identities=14% Similarity=0.105 Sum_probs=222.0
Q ss_pred HHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHcCCh
Q 015351 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV-----DQLWYKYIHMEEMLGNV 175 (408)
Q Consensus 101 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~ 175 (408)
+.-.++.++|+..|-..++.+|...++.+.+|+++...|..+.|+.+-+..+.. |+. ..+...+|+-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 344568999999999999999999999999999999999999999998777665 432 24677889999999999
Q ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 176 AGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK------VSTWIKYAKFEMKMGEVDRARNVY 248 (408)
Q Consensus 176 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~a~~~~~~~~~~~A~~~~ 248 (408)
+.|..+|........- ..+...+..+|....++++|+.+-++..+..+. ...+..++..+....+.+.|+..+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999988764333 788899999999999999999999999998863 345788888888899999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 015351 249 ERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ 328 (408)
Q Consensus 249 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~ 328 (408)
.++++.+|. ...+-..+|+++...|+++.|.+.++.+++.+|.- .+.+...+..++...|+.. .....
T Consensus 204 ~kAlqa~~~---cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~~L~~~Y~~lg~~~--------~~~~f 271 (389)
T COG2956 204 KKALQADKK---CVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLEMLYECYAQLGKPA--------EGLNF 271 (389)
T ss_pred HHHHhhCcc---ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHhCCHH--------HHHHH
Confidence 999999999 89999999999999999999999999999999886 4678888889999999954 47778
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 015351 329 YEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 329 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
+.++.+..+. +++-..++.+.....-.+.|...+.+-+...|+-.
T Consensus 272 L~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 272 LRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 8899888774 45556666666666667788888888888888754
No 76
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=3.4e-16 Score=137.34 Aligned_cols=241 Identities=10% Similarity=0.039 Sum_probs=194.8
Q ss_pred HHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh--HH
Q 015351 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK-FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNV--AG 177 (408)
Q Consensus 101 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~ 177 (408)
+...+..++|+..+.+++..+|.+..+|...+.++...| ++++++..+.++++.+|++..+|...+.+....|.. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 334578889999999999999999999999999999998 689999999999999999999999999999888874 67
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHc---CCH----HHHHHHH
Q 015351 178 ARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKM---GEV----DRARNVY 248 (408)
Q Consensus 178 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~---~~~----~~A~~~~ 248 (408)
+..++.++++.+|. ..+|...+.++...|.+++++..+.++++.+| +..+|...+.++... |.+ +++..+.
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 89999999999999 99999999999999999999999999999998 578899998887665 323 5788888
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCc-hhHHHH---
Q 015351 249 ERAVEKLADDEEAEQLFVAFAEFEER----CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDR-EGIEDA--- 320 (408)
Q Consensus 249 ~~al~~~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~-~~~~~~--- 320 (408)
.+++...|+ +..+|..++.++.. .++..+|...+.+++...|.+ ..+...+++++...... .+.+..
T Consensus 207 ~~aI~~~P~---N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s--~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 207 IDAILANPR---NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH--VFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHhCCC---CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc--HHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 899999999 89999999998887 345677999999998877776 45666666666532111 000000
Q ss_pred ------HHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015351 321 ------IVGKRRFQYEDEVRKNPMNYDIWFDY 346 (408)
Q Consensus 321 ------~~~~A~~~~~~al~~~p~~~~~~~~~ 346 (408)
..++|..+++..-+.+|--...|...
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~ 313 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADPMRRNYWAWR 313 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 13567777777756666555555543
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.76 E-value=1.2e-14 Score=132.64 Aligned_cols=313 Identities=12% Similarity=-0.051 Sum_probs=216.9
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWY 163 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (408)
+|+++..+..+|.++...|+.+.+...+.++....|.+ .+.....+..+...|++++|...+++++..+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999999999887755 456677788899999999999999999999999987777
Q ss_pred HHHHHHHHcC----ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Q 015351 164 KYIHMEEMLG----NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMK 237 (408)
Q Consensus 164 ~~~~~~~~~~----~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~ 237 (408)
. +..+...| ....+...+.......|. ......++.++...|++++|...++++++..|+ ...+..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 44444444 444444444443234444 455567788999999999999999999999985 5678899999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchH-HHHH--HHHHHHHHcCC
Q 015351 238 MGEVDRARNVYERAVEKLADDE-EAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE-DLYR--KFVAFEKQYGD 313 (408)
Q Consensus 238 ~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~--~~~~~~~~~g~ 313 (408)
.|++++|...+++++...|.++ .....|..++.++...|++++|...|++++...|..... .... .........|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999999877421 123467789999999999999999999998665522111 1111 11222223343
Q ss_pred chhHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHH
Q 015351 314 REGIEDAIVGKRRFQYEDEVRKNPM--NYDIWFDYIRLEESVGNKERAREVYERAIANVPP-AEEKRYWQRYIYLWINYA 390 (408)
Q Consensus 314 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~w~~~~~l~~~~a 390 (408)
...... ++ .+........|. ........+.++...|+.+.|...+++....... +.....| .-+.+.+..+
T Consensus 241 ~~~~~~--w~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~~~l~A 314 (355)
T cd05804 241 VDVGDR--WE---DLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPA-RDVGLPLAEA 314 (355)
T ss_pred CChHHH--HH---HHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhH-HhhhHHHHHH
Confidence 221110 11 111221111122 2233446777888899999999999987664322 0011111 1222333444
Q ss_pred HHhhhhcCChhHHhhhc
Q 015351 391 LYEELDAGDMERTRDVY 407 (408)
Q Consensus 391 ~~~e~~~g~~~~A~~~~ 407 (408)
..+ ...|++++|.+.+
T Consensus 315 ~~~-~~~g~~~~A~~~L 330 (355)
T cd05804 315 LYA-FAEGNYATALELL 330 (355)
T ss_pred HHH-HHcCCHHHHHHHH
Confidence 444 3679999998765
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.74 E-value=3.5e-14 Score=128.66 Aligned_cols=208 Identities=15% Similarity=0.168 Sum_probs=147.6
Q ss_pred HHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHH
Q 015351 49 RERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLW 128 (408)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (408)
++++|+......-++..+..+ |..+.|.......+..++.+...|..+|-++....+|++|+++|..|+...|+|..+|
T Consensus 34 L~k~~eHgeslAmkGL~L~~l-g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCL-GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HHhCCccchhHHhccchhhcc-cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 334544433333333333332 3346699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCHHH------HHHHH
Q 015351 129 LKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM---PDQQG------WLSYI 199 (408)
Q Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~------~~~~~ 199 (408)
..++.+-.+.++++.....-.+.++..|.....|..++..+.-.|++..|..+.+...+.. |+... ...-.
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n 192 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQN 192 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887776644 43221 11122
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 200 KFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
.+....|..+.|.+.+..--...- ....-..-+.++...++.++|..+|...+..+|+
T Consensus 193 ~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 193 QILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred HHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 333333444444333322211110 1222334455566666666666666666666665
No 79
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=9.6e-16 Score=133.18 Aligned_cols=236 Identities=14% Similarity=0.112 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
...|..+-..++..+..++.+...-|.+.+.+|++++|.+.|..++..+..+.++.+..|..+..+|+.++|+.+|-+.-
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 34577777888888888888888888988999999999999999999999999999999999999999999999999988
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHH
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIK 230 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 230 (408)
.+.-++.++...++.+|....+...|++.+.++....|+ +.+...++.+|-+.|+..+|.+++-.....+| +.+..--
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew 631 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW 631 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH
Confidence 888888999999999999999999999999999999998 88999999999999999999999988888888 4666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 310 (408)
++.+|....-+++|+.+|+++--.-|. ...+.+..+.++.+.|++.+|..+|+..-...|.+ ......+..+.-.
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~---~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped--ldclkflvri~~d 706 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPN---QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED--LDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc--hHHHHHHHHHhcc
Confidence 788888888899999999999888887 66777788899999999999999999999999987 5666666666555
Q ss_pred cCC
Q 015351 311 YGD 313 (408)
Q Consensus 311 ~g~ 313 (408)
.|-
T Consensus 707 lgl 709 (840)
T KOG2003|consen 707 LGL 709 (840)
T ss_pred ccc
Confidence 553
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.74 E-value=1.9e-15 Score=129.36 Aligned_cols=191 Identities=17% Similarity=0.106 Sum_probs=157.5
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchH---
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH---TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ--- 160 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 160 (408)
++..+..++.+|..+...|+++.|+..|++++..+|.++ .+|+.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456678899999999999999999999999999999876 67899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHc--------CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHH
Q 015351 161 LWYKYIHMEEML--------GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKY 231 (408)
Q Consensus 161 ~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 231 (408)
+++.+|.++... |++++|...|+++++.+|+ ...+..+..+....+.. ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~----------------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL----------------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH----------------HHHHHHH
Confidence 688888888775 7888999999999999998 44443333221111110 1123467
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 015351 232 AKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP 293 (408)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 293 (408)
+.++...|++.+|+..|+++++..|+.+..+.++..++..+...|++++|..+++......|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88899999999999999999999987666789999999999999999999999888776655
No 81
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2.8e-15 Score=130.35 Aligned_cols=267 Identities=9% Similarity=0.027 Sum_probs=132.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAEVEMKNK--FINHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 172 (408)
.-+--++++|+++.|++++.-.-+.+... ..+-..+..++..+| ++..|.++-..++.++.-++.+....|.+....
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN 503 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec
Confidence 33444555556665555554443332221 112222333333322 455555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 173 GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCH-PKVSTWIKYAKFEMKMGEVDRARNVYER 250 (408)
Q Consensus 173 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~a~~~~~~~~~~~A~~~~~~ 250 (408)
|++++|.+.|+.++..+.+ ..+.+..+..+..+|+.++|+.+|-+.-... .+.++...++.+|..+.+...|++.+-+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 5555555555555554444 4555555555555555555555554443332 2345555555555555555555555555
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 015351 251 AVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYE 330 (408)
Q Consensus 251 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 330 (408)
+....|. +|.++..++.+|-+.|+-.+|..++-....-.|.+ .+...-++.++....= .++|+..|+
T Consensus 584 ~~slip~---dp~ilskl~dlydqegdksqafq~~ydsyryfp~n--ie~iewl~ayyidtqf--------~ekai~y~e 650 (840)
T KOG2003|consen 584 ANSLIPN---DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN--IETIEWLAAYYIDTQF--------SEKAINYFE 650 (840)
T ss_pred hcccCCC---CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc--hHHHHHHHHHHHhhHH--------HHHHHHHHH
Confidence 5555555 45555555555555555555555555555545544 2222222222221111 334555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 331 DEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 331 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
++--..|+...-.+..+.++.+.|+++.|.++|+..-+..|.+-+
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 555555544333333445555555555555555555555555543
No 82
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.73 E-value=5.7e-14 Score=124.72 Aligned_cols=347 Identities=21% Similarity=0.342 Sum_probs=215.1
Q ss_pred HHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh
Q 015351 46 REARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH 125 (408)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 125 (408)
++.++.+|.+...|.+.+..... .-+++.+..||+.+...|..+.+|..+++......+++...++|.++|..- -+.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt--~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-Lnl 86 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT--QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNL 86 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc--CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhH
Confidence 55555555554444443332222 245788999999999999999999999999999999999999999998643 348
Q ss_pred HHHHHHHHHHHhc-cCHHHHH----HHHHHHHHh---CCCchHHHHHHHHHHHH---------cCChHHHHHHHHHHHHh
Q 015351 126 TLWLKYAEVEMKN-KFINHAR----NVWDRAVTL---LPRVDQLWYKYIHMEEM---------LGNVAGARQIFERWMHW 188 (408)
Q Consensus 126 ~~~~~~a~~~~~~-~~~~~A~----~~~~~al~~---~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~ 188 (408)
++|..|...-.+. |+...++ +.|+-++.. ++.+..+|..++.++.. +.+.+..+.+|++|+..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 8998888765543 3333322 333333333 45667788888777543 23556677777777742
Q ss_pred CCC--HHH-----------------------------------------------------------------HHHHHHH
Q 015351 189 MPD--QQG-----------------------------------------------------------------WLSYIKF 201 (408)
Q Consensus 189 ~p~--~~~-----------------------------------------------------------------~~~~~~~ 201 (408)
.-. ..+ |..++..
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 111 333 4444444
Q ss_pred HHHhhhH--------HHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHcCCc
Q 015351 202 ELRYNEV--------ERARQIYERFVQCHP-KVSTWIKYAKFEMKMGE--------------VDRARNVYERAVEKLADD 258 (408)
Q Consensus 202 ~~~~~~~--------~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 258 (408)
+...+-. .+..-+|++++...+ .+++|..++.++...++ .+++.++|++++......
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 3322111 122233455555444 46789888887776666 688999999988764332
Q ss_pred HHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHH---------------
Q 015351 259 EEAEQLFVAFAEFEERCKE---TERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA--------------- 320 (408)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------- 320 (408)
+..+++.++......-+ .+....++++++.....+ ...+|..+..+-.+......++.+
T Consensus 327 --~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 327 --NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred --HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 45555566655543333 444455555554432211 112222222222111111110000
Q ss_pred ------------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHH
Q 015351 321 ------------IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN-VPPAEEKRYWQRYIYLWI 387 (408)
Q Consensus 321 ------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~w~~~~~l~~ 387 (408)
...-|..+|+-.+...++.+..-..+..++...|+-..|+.+|++++.. .|.+....+|.+
T Consensus 404 Va~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r------ 477 (656)
T KOG1914|consen 404 VAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR------ 477 (656)
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH------
Confidence 0345889999999999999999999999999999999999999999987 444444455555
Q ss_pred HHHHHhhhhcCChhHHhhh
Q 015351 388 NYALYEELDAGDMERTRDV 406 (408)
Q Consensus 388 ~~a~~~e~~~g~~~~A~~~ 406 (408)
+..|+ ...|+...++++
T Consensus 478 -~l~yE-S~vGdL~si~~l 494 (656)
T KOG1914|consen 478 -MLEYE-SNVGDLNSILKL 494 (656)
T ss_pred -HHHHH-HhcccHHHHHHH
Confidence 44555 578888877654
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=8.8e-15 Score=134.14 Aligned_cols=248 Identities=15% Similarity=0.162 Sum_probs=178.6
Q ss_pred hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-
Q 015351 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL--------LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM- 189 (408)
Q Consensus 119 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~- 189 (408)
..+|.-..+...++..|...|+++.|+..++++++. .|........+|.+|...+++.+|..+|++|+.+.
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 457777777777888888888888888888888877 45544555568888888888888888888888642
Q ss_pred -------CC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC------Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015351 190 -------PD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP------KV---STWIKYAKFEMKMGEVDRARNVYERAV 252 (408)
Q Consensus 190 -------p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~---~~~~~~a~~~~~~~~~~~A~~~~~~al 252 (408)
|. ..++..++.+|...|++++|..++++++++.. .+ ..+..++.++...+++++|..++++++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 22 56677778888888888888888888876531 12 346677788888899999999999888
Q ss_pred HHcC-----CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----c-chHHHHHHHHHHHHHcCCchhHHHHH
Q 015351 253 EKLA-----DDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK-----G-RAEDLYRKFVAFEKQYGDREGIEDAI 321 (408)
Q Consensus 253 ~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 321 (408)
+..- +++..+.+..++|.++...|++++|.++|++|++..-. + ........++..+.+.+.......+
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l- 431 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL- 431 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH-
Confidence 7653 23346778889999999999999999999999875411 1 1122333444445555554444333
Q ss_pred HHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015351 322 VGKRRFQYEDEVR-KNPMNYDIWFDYIRLEESVGNKERAREVYERAIA 368 (408)
Q Consensus 322 ~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 368 (408)
+.+++.+. +... -.|+....+.+++.+|..+|+++.|.++.++++.
T Consensus 432 ~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 55566665 3332 3455566799999999999999999999999884
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.7e-16 Score=132.99 Aligned_cols=273 Identities=12% Similarity=0.047 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
+..|++.|..+|+..|.++..|...+..++..|+++.|....++.+++.|..+......++++...++..+|...|+..
T Consensus 65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~- 143 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK- 143 (486)
T ss_pred HHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh-
Confidence 3556666666666666666666666666666666666666666666666666666666666666666666666555511
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHH
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM---PD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVST 227 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 227 (408)
.++ ....|...+++.+..+ |. ...-..-+.++.-.|++++|.+.--..++.++ +...
T Consensus 144 -------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~a 205 (486)
T KOG0550|consen 144 -------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEA 205 (486)
T ss_pred -------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHH
Confidence 000 0111111222222111 11 12222234666666777777777777777665 3555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc--
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA---------EQLFVAFAEFEERCKETERARCIYKFALDHIPKGR-- 296 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 296 (408)
....+.++.-.++.+.|...|++++..+|+.... ...|-.-|.-..+.|++..|.+.|..+|.++|.+.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 6666666666777777777777777777663222 33445555566667777777777777777777643
Q ss_pred hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 297 AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
...+|...+......|. ..+|+...+.++.++|.....+...|.++...+++++|++.|++|++...+
T Consensus 286 naklY~nra~v~~rLgr--------l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGR--------LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHHHHHHhHhhhcccCC--------chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34556666666666666 344777777777777777777777777777777777777777777766544
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.70 E-value=3.3e-15 Score=140.91 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=171.1
Q ss_pred ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 104 QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFE 183 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 183 (408)
..+...|...|-++++++|.-..+|..+|.+|+...+...|.++|++|.+++|.+..+|-..++.+....+++.|..+.-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH
Q 015351 184 RWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE 259 (408)
Q Consensus 184 ~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 259 (408)
++-+..|. ...|...|-.+...++...|+..|+.++..+| +...|..+|..|...|++..|.++|.++....|.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-- 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-- 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH--
Confidence 88777776 67788889999999999999999999999999 5789999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 260 EAEQLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
+.-..+..+.+....|.+.+|...+...+..
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7777888888999999999999999888764
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=1.4e-15 Score=118.53 Aligned_cols=125 Identities=14% Similarity=0.001 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC
Q 015351 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP 156 (408)
Q Consensus 77 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 156 (408)
...|+++++.+|++ +..+|..+...|++++|...|++++..+|.+..+|..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999875 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 015351 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELR 204 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 204 (408)
+++.+|+.+|.++...|++++|+..|+++++..|+ +..|...+.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 7777777665443
No 87
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-14 Score=124.91 Aligned_cols=249 Identities=11% Similarity=-0.031 Sum_probs=195.2
Q ss_pred HHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---
Q 015351 42 EQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL--- 118 (408)
Q Consensus 42 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--- 118 (408)
......|.+..|++.+.+..+...+.-+ +.++.|..-.+..++..|..+......++++...++..+|...|+..-
T Consensus 69 l~~yt~Ai~~~pd~a~yy~nRAa~~m~~-~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~ 147 (486)
T KOG0550|consen 69 LKNYTFAIDMCPDNASYYSNRAATLMML-GRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYK 147 (486)
T ss_pred HHHHHHHHHhCccchhhhchhHHHHHHH-HhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhH
Confidence 3455566677776655444444333333 334678888888889999999999999999999999999988877322
Q ss_pred --hc-------------cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 119 --EV-------------DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFE 183 (408)
Q Consensus 119 --~~-------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 183 (408)
.. .|....+-..-+.++...|++++|...--..+++++.+..+...-+.++...++.+.|+..|+
T Consensus 148 ~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~ 227 (486)
T KOG0550|consen 148 AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQ 227 (486)
T ss_pred HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHh
Confidence 00 123334445567788888999999999999999999998888888888888999999999999
Q ss_pred HHHHhCCC-------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCHHHHH
Q 015351 184 RWMHWMPD-------------QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-----VSTWIKYAKFEMKMGEVDRAR 245 (408)
Q Consensus 184 ~al~~~p~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~a~~~~~~~~~~~A~ 245 (408)
+++.++|+ ...|..-|+-..+.|++..|.+.|..++.++|+ ..+|.+.+.+....|+..+|+
T Consensus 228 qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 228 QALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred hhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhh
Confidence 99998886 234666677777888899999999999998884 456888888888999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 015351 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294 (408)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 294 (408)
...+.++++++. ....++..|.++...++++.|.+.|+++++...+
T Consensus 308 sdc~~Al~iD~s---yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 308 SDCNEALKIDSS---YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhhhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999998776 7888888899999999999999999999886444
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=2.8e-13 Score=123.63 Aligned_cols=288 Identities=13% Similarity=0.005 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh----ccCHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWN---TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK----NKFINHARN 146 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~ 146 (408)
+.+...+.++.+..|.+ .......+..+...|++++|...+++++..+|.+..++.. +..+.. .+....+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 101 (355)
T cd05804 23 PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVAR 101 (355)
T ss_pred chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHH
Confidence 34566777777776654 4456667888899999999999999999999999987774 333333 345555555
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-
Q 015351 147 VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK- 224 (408)
Q Consensus 147 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 224 (408)
.+......+|.....+..++.++...|++++|...++++++..|+ ...+..++.++...|++++|+.++++++...|.
T Consensus 102 ~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 102 VLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 555544556777777788899999999999999999999999999 788899999999999999999999999998752
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH--HHHHHHHHcCChHHHHHH---HHHHHhhCCCc
Q 015351 225 ----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFV--AFAEFEERCKETERARCI---YKFALDHIPKG 295 (408)
Q Consensus 225 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~~~~~~~~~~~~A~~~---~~~al~~~p~~ 295 (408)
...|..++.++...|++++|...|++++...|.......... .+...+...|....+... ........|..
T Consensus 182 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 261 (355)
T cd05804 182 SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDH 261 (355)
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcc
Confidence 235678999999999999999999999766552110111101 222222334433333332 22221211221
Q ss_pred chHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015351 296 RAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN---------PMNYDIWFDYIRLEESVGNKERAREVYERA 366 (408)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 366 (408)
.........+......|+.+ .|...++...... .....+....+..+...|++++|.+.+.++
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~--------~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 262 GLAFNDLHAALALAGAGDKD--------ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred cchHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11222234555566667744 4555555544321 113455667788889999999999999999
Q ss_pred HhcC
Q 015351 367 IANV 370 (408)
Q Consensus 367 l~~~ 370 (408)
+...
T Consensus 334 l~~a 337 (355)
T cd05804 334 RDDL 337 (355)
T ss_pred HHHH
Confidence 9764
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.68 E-value=1.1e-14 Score=133.50 Aligned_cols=222 Identities=13% Similarity=0.153 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCChHHHHHHH
Q 015351 69 LADYRLRKRKEFEDLIRR--------VRWNTGVWIKYAKWEESQKDFNRARSVWERALEV--------DYRNHTLWLKYA 132 (408)
Q Consensus 69 ~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a 132 (408)
.++.++.|...|++++.. +|.-......+|.+|...+++.+|+.+|++|+.+ +|.-..++..++
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456678999999999988 5555556666999999999999999999999953 455567889999
Q ss_pred HHHHhccCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------C-HHHH
Q 015351 133 EVEMKNKFINHARNVWDRAVTLL--------PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP--------D-QQGW 195 (408)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~-~~~~ 195 (408)
.+|...|++++|..++++|+.+. |........++.++...+++++|..++++++++.- . ..+.
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 99999999999999999999873 23345677888889999999999999999987532 2 6788
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCC------C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----CCcHHHH
Q 015351 196 LSYIKFELRYNEVERARQIYERFVQCHP------K---VSTWIKYAKFEMKMGEVDRARNVYERAVEKL----ADDEEAE 262 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~A~~~~~~al~~~p------~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~ 262 (408)
..++.++...|++++|..+|+++++... + ......+|..+.+.+++.+|...|.++.... |++++..
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 9999999999999999999999998752 1 2346778888899999999999999887653 4455578
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 015351 263 QLFVAFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
..+.+++.+|...|+++.|.++.++++.
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8899999999999999999999998874
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.67 E-value=1.1e-12 Score=121.81 Aligned_cols=304 Identities=13% Similarity=0.060 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
.++.+-.+.++...|++++|++.++.....-++...+.-..|.++.+.|+.++|..+|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 45666678888999999999999999988888999999999999999999999999999999999999998888888773
Q ss_pred HcC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHH
Q 015351 171 MLG-----NVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVE-RARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRA 244 (408)
Q Consensus 171 ~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A 244 (408)
... +.+...++|+......|.......+......-..+. .+..++...+... -+.++..+-.+|....+..-.
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-vPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG-VPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHcChhHHHHH
Confidence 332 466778889988888887443333332222222333 3445555665543 345555565555544444444
Q ss_pred HHHHHHHHHHc------C------CcHHHHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH
Q 015351 245 RNVYERAVEKL------A------DDEEAEQLF--VAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310 (408)
Q Consensus 245 ~~~~~~al~~~------p------~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 310 (408)
..++...+... + ..+....+| +.++..+...|++++|+.+++++|...|.. ++++..-+.++..
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHH
Confidence 44444433321 0 001123345 667999999999999999999999999997 8999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH-HHHHHHHHHH
Q 015351 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW-QRYIYLWINY 389 (408)
Q Consensus 311 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w-~~~~~l~~~~ 389 (408)
.|+ +.+|...++.|-.+++.+--+-...+..+.+.|+.++|..++..-.+... ++...++ ..++..-+..
T Consensus 241 ~G~--------~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 241 AGD--------LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETEC 311 (517)
T ss_pred CCC--------HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHH
Confidence 999 67799999999999999998989999999999999999999888655432 2221111 1112223356
Q ss_pred HHHhhhhcCChhHHhhhc
Q 015351 390 ALYEELDAGDMERTRDVY 407 (408)
Q Consensus 390 a~~~e~~~g~~~~A~~~~ 407 (408)
|..+. ..|++..|.+-|
T Consensus 312 a~a~~-r~~~~~~ALk~~ 328 (517)
T PF12569_consen 312 AEAYL-RQGDYGLALKRF 328 (517)
T ss_pred HHHHH-HHhhHHHHHHHH
Confidence 77773 789999888765
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.66 E-value=8.8e-14 Score=134.83 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=149.5
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch-----
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD----- 159 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----- 159 (408)
..+|.+..+|..++..+...|++++|+.+++.+++.+|+...+|+.+|.++.+.+++..+.-+ +++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 457999999999999999999999999999999999999999999999999999988887766 6776666544
Q ss_pred --------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 160 --------------QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 160 --------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
.++..+|.+|.++|+.++|..+|+++++.+|+ +.+...+|..+... +.++|+.++.+++..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 55666666666666666666666666666666 66666666666555 666666666666554
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHH
Q 015351 225 VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKF 304 (408)
Q Consensus 225 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 304 (408)
+...+++..+.+++.+.+...|+ +.+.+..+-. +.+........+.++.-+
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~---d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSD---DFDFFLRIER----------------KVLGHREFTRLVGLLEDL 229 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcc---cchHHHHHHH----------------HHHhhhccchhHHHHHHH
Confidence 33334555555555555555554 2232222221 111111111112333333
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015351 305 VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEE 351 (408)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 351 (408)
-..+....+ +++++.+++.+|..+|+|..+...++.+|.
T Consensus 230 ~~~y~~~~~--------~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALED--------WDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhh--------hhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 334444444 556788888888888888888888888876
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.7e-12 Score=110.52 Aligned_cols=279 Identities=17% Similarity=0.123 Sum_probs=208.7
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCChHHHHH
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR-VDQLWYKYIHMEEMLGNVAGARQ 180 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~ 180 (408)
...|+|.+|.+...+.-+..+...-.+..-+....+.|+++.+-.++.++.+..++ ...+....+++....|+++.|+.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 44599999999999988888888888888888999999999999999999998544 34567778889999999999999
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC--ChHH--HHH--HHHHHHHcCCHHHHHH---HHHH
Q 015351 181 IFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP--KVST--WIK--YAKFEMKMGEVDRARN---VYER 250 (408)
Q Consensus 181 ~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~--~~~--~a~~~~~~~~~~~A~~---~~~~ 250 (408)
...++++..|. +.+......+|.+.|++.....++.+.-+..- +++. +-. +-.++.+..+-..+.. .++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999999998 77777778999999999999999988877653 2221 111 1112223332222222 3333
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 015351 251 AVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYE 330 (408)
Q Consensus 251 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 330 (408)
.-..... ++.+-..++.-+.+.|+.+.|.++...+++..-+. .+...+..+ ..+++. .-++..+
T Consensus 255 ~pr~lr~---~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~l--~~~d~~--------~l~k~~e 318 (400)
T COG3071 255 QPRKLRN---DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPRL--RPGDPE--------PLIKAAE 318 (400)
T ss_pred ccHHhhc---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhhc--CCCCch--------HHHHHHH
Confidence 2222222 58888999999999999999999999999875553 232222222 334433 3566788
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 331 DEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 331 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
+.+..+|+++.++..+|.++.+.+.+.+|...|+.|++.-|+... |...|+.++ +.|+...|-+++
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~----------~~~la~~~~-~~g~~~~A~~~r 384 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD----------YAELADALD-QLGEPEEAEQVR 384 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh----------HHHHHHHHH-HcCChHHHHHHH
Confidence 889999999999999999999999999999999999998887764 344555554 789998887765
No 93
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=6.2e-12 Score=108.28 Aligned_cols=282 Identities=16% Similarity=0.116 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYR-NHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
|++.+|.+...+.-+..+.....++.-++..-..||.+.|-.++.++-+..++ ...+.+..+.+....|++..|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 66778888888887777777778888888899999999999999999987444 45677888999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD---------QQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
+++...|.++.+.....++|...|++.....+..+.-+..-- ..+|..+.+-....+..+.-...++..-.
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr 257 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR 257 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH
Confidence 999999999999999999999999999999998887764321 11222222211112222222233333322
Q ss_pred hC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHH
Q 015351 221 CH-PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAED 299 (408)
Q Consensus 221 ~~-p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 299 (408)
.. .++.+-..++.-+.+.|..++|.++.+++++..-+ +.+...+.. ..-++...=++..++.++..|++ +.
T Consensus 258 ~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D----~~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~--p~ 329 (400)
T COG3071 258 KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD----PRLCRLIPR--LRPGDPEPLIKAAEKWLKQHPED--PL 329 (400)
T ss_pred HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC----hhHHHHHhh--cCCCCchHHHHHHHHHHHhCCCC--hh
Confidence 22 24788889999999999999999999999998766 333332332 26788999999999999999998 68
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 300 LYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
++..++.++.+.+. +.+|...|+.++..-| +..-|..+|..+.+.|+...|.++++.++..
T Consensus 330 L~~tLG~L~~k~~~--------w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKL--------WGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhH--------HHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999998888 7789999999999877 5677899999999999999999999999864
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.2e-12 Score=112.79 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC-cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC
Q 015351 262 EQLFVAFAEFEERCKETERARCIYKFALDH----IPK-GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN 336 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 336 (408)
..+.+..+.+....|+++.|..++...+.. .+. ...+.+......++...++.+....+ +++|+.+|.....-.
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~v-l~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAV-LDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHH-HHHHHHHHHHhcccc
Confidence 334455555555666666666666622210 000 01123333333444444444433333 667777777766655
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 337 PMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 337 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
+..-..|-..+.+..+.|+-++|...++..++.+|++...
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL 494 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence 5566678889999999999999999999999999998863
No 95
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.63 E-value=6.8e-12 Score=113.83 Aligned_cols=311 Identities=18% Similarity=0.250 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK-NKFINHARNVWDRAV 152 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 152 (408)
+.++..|...|...|.....|..+|....+.|..+.+.++|++++...|.+..+|..|...... .|+.+..+..|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999886554 568888999999999
Q ss_pred HhCCC---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH-----hhhHHHHHHHHHHHHH--
Q 015351 153 TLLPR---VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQGWLSYIKFELR-----YNEVERARQIYERFVQ-- 220 (408)
Q Consensus 153 ~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~-- 220 (408)
..... +..+|-.+..+...++++.....+|++.++..-. ...+..+-..... ....+++...=.....
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 98765 4689999999999999999999999999986432 3333333333222 1222322222111111
Q ss_pred -----------------h--CCCh---HHHHHH-------HHHHHHcCCHHHHHHHHHHHHHH-----cCCcHHHHHHHH
Q 015351 221 -----------------C--HPKV---STWIKY-------AKFEMKMGEVDRARNVYERAVEK-----LADDEEAEQLFV 266 (408)
Q Consensus 221 -----------------~--~p~~---~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~ 266 (408)
. .|+. .....+ -.++.......+.+..++..++. .|.+......|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 0 0110 000011 11222333445555566665543 233445678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh-hCCCCHHHHHH
Q 015351 267 AFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR-KNPMNYDIWFD 345 (408)
Q Consensus 267 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~ 345 (408)
.+..+....|+++...-.|++++--+..- .++|..++.+....|+ .+-|...+.++.+ ..|..+.+.+.
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y--~efWiky~~~m~~~~~--------~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALY--DEFWIKYARWMESSGD--------VSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhh--HHHHHHHHHHHHHcCc--------hhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 99999999999999999999998766654 6899999999888887 3446666666665 45778888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHh
Q 015351 346 YIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTR 404 (408)
Q Consensus 346 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~ 404 (408)
.+.+....|++..|+.++++.....|...+ +-+.++.++ ...|+.+.+.
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~---------~~l~~~~~e-~r~~~~~~~~ 420 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVE---------VVLRKINWE-RRKGNLEDAN 420 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhh---------hHHHHHhHH-HHhcchhhhh
Confidence 999999999999999999999988877654 233344444 4667777665
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=2.3e-14 Score=117.79 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHH-HhccC--HHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVE-MKNKF--INHARNVWDR 150 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~ 150 (408)
+++...++++++.+|++...|..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ...|+ .++|..++++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 55788889999999999999999999999999999999999999999999999999999864 67676 5899999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+++.+|+++.++..+|..+...|++++|+..|+++++..|.
T Consensus 136 al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 136 ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999998877
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.60 E-value=4.4e-14 Score=110.11 Aligned_cols=121 Identities=11% Similarity=-0.057 Sum_probs=81.4
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015351 111 RSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP 190 (408)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 190 (408)
...|+++++.+|++ +..+|..+...|++++|...|++++..+|++..+|..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35667777766664 445666677777777777777777777777777777777777777777777777777777776
Q ss_pred C-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHH
Q 015351 191 D-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKF 234 (408)
Q Consensus 191 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~ 234 (408)
+ +..|..+|.++...|++++|+..|+++++..|+ +..|...+.+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 6 666667776666667777777777777766663 4444444443
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=5.2e-13 Score=114.27 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=140.5
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-h---HH
Q 015351 156 PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-V---ST 227 (408)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~---~~ 227 (408)
+..+..++..|..+...|+++.|...|+++++..|+ ..++..++.++...|++++|+..|+++++..|+ + ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445678888888888889999999999998888886 357788888888888899999999988888874 2 25
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHH
Q 015351 228 WIKYAKFEMKM--------GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAED 299 (408)
Q Consensus 228 ~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 299 (408)
+..+|.++... |++++|.+.|++++..+|++ ...+..+..+....+ .. ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~~~~~~~-------~~------------~~ 167 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS---EYAPDAKKRMDYLRN-------RL------------AG 167 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC---hhHHHHHHHHHHHHH-------HH------------HH
Confidence 77778887765 67888888888888888883 333322222111000 00 11
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 300 LYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN---YDIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
.....+.++...|+ +.+|+..|++++...|++ +.+|+.+|.++...|++++|..+++......|+
T Consensus 168 ~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 168 KELYVARFYLKRGA--------YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHcCC--------hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 22345667778888 567999999999997764 589999999999999999999999887776653
No 99
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.58 E-value=6.5e-11 Score=104.83 Aligned_cols=323 Identities=20% Similarity=0.283 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF-INHARNVWDRAVT 153 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~ 153 (408)
+-..+|++++.+.+.++.+|..++.+..+.+.+.+..++|.+++..+|+++++|..-|..+...+. ++.|+.+|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 456899999999999999999999999999999999999999999999999999999998888774 9999999999999
Q ss_pred hCCCchHHHHHHHHHHHHc-----------C----Ch----HHH----------------------HHHHHH--------
Q 015351 154 LLPRVDQLWYKYIHMEEML-----------G----NV----AGA----------------------RQIFER-------- 184 (408)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~-----------~----~~----~~A----------------------~~~~~~-------- 184 (408)
.+|+++.+|..+-++.... | +. +.. .++.+.
T Consensus 169 ~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~ 248 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQ 248 (568)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHH
Confidence 9999999999887665431 0 00 000 001110
Q ss_pred ------HHHhCCC-HHHHHHHHHH----HHHh---------------hhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 015351 185 ------WMHWMPD-QQGWLSYIKF----ELRY---------------NEVERARQIYERFVQCHPKVSTWIKYAKFEMKM 238 (408)
Q Consensus 185 ------al~~~p~-~~~~~~~~~~----~~~~---------------~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~ 238 (408)
.....|. +..|-.++.- +.+. ..-+....+|+.+++..|+...|..+..++...
T Consensus 249 k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~ 328 (568)
T KOG2396|consen 249 KNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLER 328 (568)
T ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 0011233 4455555422 1110 012345688888888877777776555544321
Q ss_pred -----C-CHHHHHHHHHHHHHHcCCcHH--------------------------------HHHHHHHHHHHHHHc-CChH
Q 015351 239 -----G-EVDRARNVYERAVEKLADDEE--------------------------------AEQLFVAFAEFEERC-KETE 279 (408)
Q Consensus 239 -----~-~~~~A~~~~~~al~~~p~~~~--------------------------------~~~~~~~~~~~~~~~-~~~~ 279 (408)
| ....-..+++.+.+.....+. +...|........+. .+++
T Consensus 329 ~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q 408 (568)
T KOG2396|consen 329 FTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQ 408 (568)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhH
Confidence 1 223333344443333221111 233344333333311 1111
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHHHH--------------HHHHHcCCchh------HH-----HHHHHHHHHHHHHHHh
Q 015351 280 RARCIYKFALDHIPKGRAEDLYRKFV--------------AFEKQYGDREG------IE-----DAIVGKRRFQYEDEVR 334 (408)
Q Consensus 280 ~A~~~~~~al~~~p~~~~~~~~~~~~--------------~~~~~~g~~~~------~~-----~~~~~~A~~~~~~al~ 334 (408)
--.....-.++..+.+.....|.... ......+..+. .. .-.+.+|+..|.+...
T Consensus 409 ~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~ 488 (568)
T KOG2396|consen 409 MLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE 488 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 11111111111111111111121111 00000000000 00 0017789999999999
Q ss_pred hCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 335 KNPMNYDIWFDYIRLEESV--GNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 335 ~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
..|-+..++..++.++... -+...++.+|++|+.....+++ +|..|-.++ ..+|..+.+-.+|
T Consensus 489 lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~---------lw~~y~~~e-~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 489 LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD---------LWMDYMKEE-LPLGRPENCGQIY 553 (568)
T ss_pred CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH---------HHHHHHHhh-ccCCCcccccHHH
Confidence 9999999999999997543 2588999999999999887775 677777776 5788877655444
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.57 E-value=1.4e-11 Score=114.72 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc-----cCHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN-----KFINHAR 145 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----~~~~~A~ 145 (408)
|.+++|+..++..-..-++...+....|.++.+.|+.++|..+|..+|..+|++...+..+..+.... .+.+...
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 44577999999988888888999999999999999999999999999999999999999888877333 3578888
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCChH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---
Q 015351 146 NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVA-GARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQC--- 221 (408)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 221 (408)
.+|+......|.+..+...-..+.. -..+. .+..++...+... -+.++..+-.+|.......-...++......
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~Kg-vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKG-VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 9999998889886543222212111 11222 2334444444321 1566666666655443333333333333221
Q ss_pred -------------CCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 222 -------------HPKVSTW--IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286 (408)
Q Consensus 222 -------------~p~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 286 (408)
.|+.-+| ..++..+...|++++|+++++++++..|. .+++++..|+++.+.|++.+|...++
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMD 252 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1223345 55688899999999999999999999999 89999999999999999999999999
Q ss_pred HHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC--CC-CH----HHHHH--HHHHHHHcCCHH
Q 015351 287 FALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN--PM-NY----DIWFD--YIRLEESVGNKE 357 (408)
Q Consensus 287 ~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--p~-~~----~~~~~--~~~~~~~~g~~~ 357 (408)
.|-..++.+ -.+-...+....+.|. +++|...+..-...+ |. +. -+|+. .|..+.+.|++.
T Consensus 253 ~Ar~LD~~D--RyiNsK~aKy~LRa~~--------~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 253 EARELDLAD--RYINSKCAKYLLRAGR--------IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHhCChhh--HHHHHHHHHHHHHCCC--------HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999998887 4566667777888888 556777766655443 21 11 14654 788899999999
Q ss_pred HHHHHHHHHHhcCC
Q 015351 358 RAREVYERAIANVP 371 (408)
Q Consensus 358 ~A~~~~~~al~~~p 371 (408)
.|...|..+.+...
T Consensus 323 ~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 323 LALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=6.4e-12 Score=101.72 Aligned_cols=168 Identities=15% Similarity=0.116 Sum_probs=101.4
Q ss_pred HHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q 015351 170 EMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~ 247 (408)
...|+.+-|..++.+.....|. ..+-...|..+...|++++|+++|+..++.+|. ..++-.-..+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 3445555555555555554455 555555555555566666666666666666653 23344444455556666666666
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 015351 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327 (408)
Q Consensus 248 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~ 327 (408)
+..-++.++. +.++|..++.+|...|++++|.-++++.+-..|.+ +..+..++.+....|..+. +.-|++
T Consensus 143 ln~YL~~F~~---D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~gg~eN-----~~~ark 212 (289)
T KOG3060|consen 143 LNEYLDKFMN---DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQGGAEN-----LELARK 212 (289)
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHH-----HHHHHH
Confidence 6666666666 56666667777666667777777776666666665 5566666666665555433 445667
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 015351 328 QYEDEVRKNPMNYDIWFDYI 347 (408)
Q Consensus 328 ~~~~al~~~p~~~~~~~~~~ 347 (408)
+|.+++.++|.+...|+.+.
T Consensus 213 yy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHhChHhHHHHHHHH
Confidence 77777777776666655543
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.57 E-value=1.1e-11 Score=110.54 Aligned_cols=284 Identities=21% Similarity=0.367 Sum_probs=193.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchH
Q 015351 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ 160 (408)
Q Consensus 81 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (408)
++-|+.+|.+.++|..+.+-+..+ .+++++..|++.+...|.++.+|..++..+...++++....+|.++|...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 778899999999999999988777 9999999999999999999999999999999999999999999999986544 78
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHH----HHh---CCC-HHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHhC
Q 015351 161 LWYKYIHMEEML-GNVAGARQIFERW----MHW---MPD-QQGWLSYIKFEL---------RYNEVERARQIYERFVQCH 222 (408)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~A~~~~~~a----l~~---~p~-~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~ 222 (408)
+|..+...-.+. |+...+++..-+| +.. ++. ..+|..|+.++. .+.+++..+.+|++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 898887765543 4444444433333 332 233 678888887754 2335677788888888653
Q ss_pred C-C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH------hh---
Q 015351 223 P-K-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL------DH--- 291 (408)
Q Consensus 223 p-~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al------~~--- 291 (408)
- + ..+|..+..+....+. --|+++..+ +...+..|+..+++.. +.
T Consensus 168 m~nlEkLW~DY~~fE~~IN~-~tarK~i~e-----------------------~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINI-ITARKFIGE-----------------------RSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred cccHHHHHHHHHHHHHHHHH-HHHHHHHHh-----------------------hCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 2 2 4677777665443221 122222111 1112333443333332 21
Q ss_pred -CCC-cc-----hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---------
Q 015351 292 -IPK-GR-----AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGN--------- 355 (408)
Q Consensus 292 -~p~-~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--------- 355 (408)
.|. .+ ...+|..++.++...+-...-..++-.+-.-.|++++..-+.++++|+.++.++...++
T Consensus 224 ~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~ 303 (656)
T KOG1914|consen 224 AVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVP 303 (656)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccc
Confidence 111 11 25789999999987654322222223334567899999999999999999999888777
Q ss_pred -----HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcC
Q 015351 356 -----KERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAG 398 (408)
Q Consensus 356 -----~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g 398 (408)
.+++..+|++++....... ..+...|+.+.|...+
T Consensus 304 ~a~~~t~e~~~~yEr~I~~l~~~~--------~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 304 DAKSLTDEAASIYERAIEGLLKEN--------KLLYFALADYEESRYD 343 (656)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHhcc
Confidence 8899999999997543322 1366677777764433
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.56 E-value=1.8e-13 Score=112.43 Aligned_cols=121 Identities=6% Similarity=0.097 Sum_probs=91.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH-HHhhh--HHHHHH
Q 015351 138 NKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE-LRYNE--VERARQ 213 (408)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-~~~~~--~~~A~~ 213 (408)
.++.++++..++++++.+|++...|..+|.++...|++++|...|+++++..|+ ..++..++.++ ...|+ .++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 456677777777778888877778888888777788888888888888877777 77777777753 55565 477888
Q ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc
Q 015351 214 IYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADD 258 (408)
Q Consensus 214 ~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 258 (408)
+++++++.+| +..++..+|..+...|++++|+..|+++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8888888777 46677777777788888888888888888777763
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.56 E-value=8e-13 Score=127.35 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=138.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 78 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
..........|.+++++..+|.+....|.+++|...++++++..|++..++..++.++.+.+++++|...+++++...|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~ 152 (694)
T PRK15179 73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS 152 (694)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence 33344456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 015351 158 VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP 223 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 223 (408)
+....+.+|.++...|++++|..+|++++..+|+ +.+|..++..+...|+.++|...|+++++...
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998888 99999999999999999999999999999874
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=1.7e-12 Score=119.57 Aligned_cols=274 Identities=16% Similarity=0.130 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
..|..+|++. ..|-..+.+|...|+..+|..+..+-++ .|+++.+|..+|++.....-+++|.++....
T Consensus 415 ksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~-- 483 (777)
T KOG1128|consen 415 KSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI-- 483 (777)
T ss_pred HHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh--
Confidence 3466666664 6788888888888888888888888777 6677777777777665554444444444332
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHH
Q 015351 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKY 231 (408)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 231 (408)
+..+...+|....+.+++.++...+++.++++|- ...|+.+|.+..+.++++.|.+.|.+++...|+ ...|.++
T Consensus 484 ----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 484 ----SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred ----hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence 3345556666666789999999999999999999 999999999999999999999999999999995 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--cchHHHHHHHHHHHH
Q 015351 232 AKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK--GRAEDLYRKFVAFEK 309 (408)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~ 309 (408)
+..|...|+-.+|...+.++++.+-. ++.+|.++..+..+.|.+++|++.|.+.+...-. ++.+..-........
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlKcn~~---~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~ 636 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALKCNYQ---HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEG 636 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhcCCC---CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhh
Confidence 99999999999999999999999866 8999999999999999999999999999874221 211222222222222
Q ss_pred Hc---CCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHh
Q 015351 310 QY---GDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEE-----SVGNKERAREVYERAIA 368 (408)
Q Consensus 310 ~~---g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-----~~g~~~~A~~~~~~al~ 368 (408)
.. ++..... ...-.+.+-+.+...-+.+..|..++..+. +.+..++|.+..++...
T Consensus 637 ~~d~s~de~~~~---k~~~kelmg~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~~~l~k~~~ 700 (777)
T KOG1128|consen 637 MTDESGDEATGL---KGKLKELLGKVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAYRALSKAYK 700 (777)
T ss_pred ccccccchhhhh---hHHHHHHHHHHHHHHhCchhhhHhHhhhccccchhcccccHHHHhhhhhCcc
Confidence 22 2211111 111113455555555558888888887432 22344556555555544
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=9e-12 Score=100.86 Aligned_cols=161 Identities=13% Similarity=0.091 Sum_probs=114.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChH
Q 015351 97 YAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVA 176 (408)
Q Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 176 (408)
..-.....|+.+-|..++.+.-...|++..+-...|..+...|++++|+++|+..++.+|.+..++.....+...+|+.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 33344556777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 015351 177 GARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMG---EVDRARNVYERA 251 (408)
Q Consensus 177 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~---~~~~A~~~~~~a 251 (408)
+|+.-+-..++..+. .++|..++++|...|++++|.-+|++.+-..|. +-.+..++.+++..| +..-|+++|.++
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 777777777777766 777777777777777777777777777777774 344566677665544 556677777777
Q ss_pred HHHcCC
Q 015351 252 VEKLAD 257 (408)
Q Consensus 252 l~~~p~ 257 (408)
++.+|.
T Consensus 218 lkl~~~ 223 (289)
T KOG3060|consen 218 LKLNPK 223 (289)
T ss_pred HHhChH
Confidence 777664
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=3.5e-13 Score=104.67 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 78 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
..|++++..+|.+......+|..+...|++++|...|++++..+|.++.+|..+|.++...|++++|...|++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 158 VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
++..+..+|.++...|++++|...|+++++..|+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999987
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.54 E-value=2e-12 Score=105.62 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=145.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL 155 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 155 (408)
+...+=+....+|.+..+ ..++..+...|+-+.+..+..++...+|.+..+...+|......|++..|+..+.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 344444556678888888 8888888888888888888888888888888888888888888899999999999999888
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHH
Q 015351 156 PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAK 233 (408)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~ 233 (408)
|++.++|..+|-+|.+.|+++.|+..|.+++++.|. +.+..+++..+.-.|+++.|..++..+....+ +..+-.+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 888888988888888888888888888888888888 78888888888888888888888888877665 5677778888
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 015351 234 FEMKMGEVDRARNVYERA 251 (408)
Q Consensus 234 ~~~~~~~~~~A~~~~~~a 251 (408)
+....|++++|..+-.+-
T Consensus 211 ~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 211 VVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHhhcCChHHHHhhcccc
Confidence 888888888888776553
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=120.14 Aligned_cols=218 Identities=15% Similarity=0.153 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRY 205 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (408)
..-..++.++...|-...|..+|++ ...|...+.+|...|+..+|..+..+-++..|++..|..+|++....
T Consensus 399 q~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 4446788889999999999888887 46788888999999999999999888888666688888888877766
Q ss_pred hhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 015351 206 NEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY 285 (408)
Q Consensus 206 ~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 285 (408)
.-+++|..+.+... ..+...+|......++++++.+.++..++.+|- ....|+.+|-+..+.++++.|...|
T Consensus 471 s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~npl---q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPL---QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCcc---chhHHHhccHHHHHHhhhHHHHHHH
Confidence 66666666555432 334455566666678999999999999999888 7889999999999999999999999
Q ss_pred HHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 286 KFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYER 365 (408)
Q Consensus 286 ~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 365 (408)
.+++...|++ ...|.++...+...++ ..+|...+..|++-+-.+..+|-++..+..+.|.+++|++.|.+
T Consensus 543 ~rcvtL~Pd~--~eaWnNls~ayi~~~~--------k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 543 HRCVTLEPDN--AEAWNNLSTAYIRLKK--------KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHhhcCCCc--hhhhhhhhHHHHHHhh--------hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999998987 7889999888888887 55688889999998888889999999999999999999999998
Q ss_pred HHhc
Q 015351 366 AIAN 369 (408)
Q Consensus 366 al~~ 369 (408)
.+..
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 8764
No 110
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.52 E-value=3.8e-11 Score=109.08 Aligned_cols=302 Identities=21% Similarity=0.337 Sum_probs=219.4
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015351 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168 (408)
Q Consensus 89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 168 (408)
.+...|..+..--....+.+.++.+|...|...|.....|..+|....+.|..+.+..+|+++++..|.+..+|..|..+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34456655544444445568899999999999999999999999999999999999999999999999999999999877
Q ss_pred HHH-cCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHH----
Q 015351 169 EEM-LGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPK--VSTWIKYAKFEMK---- 237 (408)
Q Consensus 169 ~~~-~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~a~~~~~---- 237 (408)
... .|+.+..+..|++|...... ...|-.+..+...+++......+|++.++.... ...+..+-....+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 654 57788899999999998765 789999999999999999999999999986321 1222222222221
Q ss_pred -cCCHHHHHHHHHHHHH-------------------Hc--CCc-HHHHH-HHHH----HHHHHHHcCChHHHHHHHHHHH
Q 015351 238 -MGEVDRARNVYERAVE-------------------KL--ADD-EEAEQ-LFVA----FAEFEERCKETERARCIYKFAL 289 (408)
Q Consensus 238 -~~~~~~A~~~~~~al~-------------------~~--p~~-~~~~~-~~~~----~~~~~~~~~~~~~A~~~~~~al 289 (408)
.-..+++...-....+ .. |.. .+... .... --.++.........+..|+..+
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 1222322222221111 00 000 00011 1111 1112233445566667777776
Q ss_pred hh-----CCCc-chHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 290 DH-----IPKG-RAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVY 363 (408)
Q Consensus 290 ~~-----~p~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 363 (408)
+. .|.+ .....|..+..+....|+ ++...-.|++++--+....+.|..++.+....|+.+-|..++
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~--------~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGD--------FSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhccc--------HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 63 1221 125679999999999999 556888999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 364 ERAIAN-VPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 364 ~~al~~-~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
.++.+. .|..+. +.+.++.|.+ ..|+++.|+.+|+
T Consensus 355 ~~~~~i~~k~~~~---------i~L~~a~f~e-~~~n~~~A~~~lq 390 (577)
T KOG1258|consen 355 ARACKIHVKKTPI---------IHLLEARFEE-SNGNFDDAKVILQ 390 (577)
T ss_pred HhhhhhcCCCCcH---------HHHHHHHHHH-hhccHHHHHHHHH
Confidence 999886 555554 6778999997 8999999998874
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.50 E-value=5.7e-12 Score=121.50 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH---hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERAL---EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 168 (408)
.++-.+-.+....+....+.+.+-+++ ...|.++.++..+|.+....|.+++|..+++++++..|++..++..++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~ 129 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRG 129 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 345555556666777766666655554 56788899999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHH
Q 015351 169 EEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARN 246 (408)
Q Consensus 169 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~ 246 (408)
+.+.+++++|+..+++++...|+ ......++.++...|++++|..+|++++..+|+ ..+++.+|..+...|+.++|..
T Consensus 130 L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999998 888899999999999999999999999987774 7889999999999999999999
Q ss_pred HHHHHHHHcCC
Q 015351 247 VYERAVEKLAD 257 (408)
Q Consensus 247 ~~~~al~~~p~ 257 (408)
.|+++++...+
T Consensus 210 ~~~~a~~~~~~ 220 (694)
T PRK15179 210 VLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHhhCc
Confidence 99999988766
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=4.5e-10 Score=95.46 Aligned_cols=321 Identities=12% Similarity=0.065 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRW---NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
+..|++.++-.+..+.. +...|+ |.++...|++++|...|.-+...+.-+.++|..+|-+..-.|.+.+|..+-.
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWi--a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWI--AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHH--HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 34577777766644432 445665 6788899999999999999998777778899999999999999999987766
Q ss_pred HHHHh--------------CCC------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Q 015351 150 RAVTL--------------LPR------------VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE 202 (408)
Q Consensus 150 ~al~~--------------~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 202 (408)
++-.. +.. ..+-...++.++...-.+++|+.+|.+.+.-+|+ ..+-..++.++
T Consensus 116 ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 116 KAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred hCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 54221 100 0111233344444555677888888888888887 44555566777
Q ss_pred HHhhhHHHHHHHHHHHHHhCCChHHHHHH-HHHHHH--cCCH----------------HHHHHHHH----------HHHH
Q 015351 203 LRYNEVERARQIYERFVQCHPKVSTWIKY-AKFEMK--MGEV----------------DRARNVYE----------RAVE 253 (408)
Q Consensus 203 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~-a~~~~~--~~~~----------------~~A~~~~~----------~al~ 253 (408)
.+..-++-+.+++.-.++..|++.+-.++ +..+++ .|+. +.+..+++ -+++
T Consensus 196 yKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred HhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHH
Confidence 77777888888888888888865443222 211111 1221 12222221 1222
Q ss_pred HcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHH--HHcCCchhHH---H--------
Q 015351 254 KLAD-DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFE--KQYGDREGIE---D-------- 319 (408)
Q Consensus 254 ~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~g~~~~~~---~-------- 319 (408)
..|. -..-|+...+++..+.++++.++|..+.+. ..|..+...+........ .+.|..+-+. .
T Consensus 276 VLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 276 VLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred hchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 2222 011367788899999999999999988775 456553223332222211 1222222110 0
Q ss_pred --------------------HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 015351 320 --------------------AIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYW 379 (408)
Q Consensus 320 --------------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w 379 (408)
..++..+..+...-...-++....++++......|++.+|.++|-+.- .|+.....++
T Consensus 353 a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is--~~~ikn~~~Y 430 (557)
T KOG3785|consen 353 ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS--GPEIKNKILY 430 (557)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc--ChhhhhhHHH
Confidence 013333333333333455677788899999999999999999987743 2332222222
Q ss_pred HHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 380 QRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 380 ~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
. .-+|.++ +.+|....|.++|
T Consensus 431 ~------s~LArCy-i~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 431 K------SMLARCY-IRNKKPQLAWDMM 451 (557)
T ss_pred H------HHHHHHH-HhcCCchHHHHHH
Confidence 1 1245555 4677777776654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.49 E-value=9e-12 Score=101.80 Aligned_cols=178 Identities=14% Similarity=0.068 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 015351 109 RARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW 188 (408)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 188 (408)
.+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..+...+|......|++..|...++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3666666777889999999 999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 015351 189 MPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFV 266 (408)
Q Consensus 189 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 266 (408)
.|+ .+.|..+|-++.+.|+++.|+..|.++++..|+ +.+..+++..+.-.|+++.|..++..+....+. +..+-.
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a---d~~v~~ 206 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA---DSRVRQ 206 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC---chHHHH
Confidence 998 999999999999999999999999999999984 778999999999999999999999999988776 688999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 015351 267 AFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 267 ~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
+++.+....|+++.|..+..+-+.
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHhhcCChHHHHhhcccccc
Confidence 999999999999999988876544
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.48 E-value=2.2e-11 Score=118.47 Aligned_cols=227 Identities=9% Similarity=0.023 Sum_probs=170.9
Q ss_pred hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 015351 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSY 198 (408)
Q Consensus 119 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 198 (408)
..+|.+..+|..++..+...|++++|+.+.+.+++.+|+...+|+.+|.++.+.++++.+..+ +++...+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 467999999999999999999999999999999999999999999999999999998887766 666655542
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q 015351 199 IKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKE 277 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 277 (408)
.++ .++..+-..+-..+ +..++..+|.+|.++|+.++|..+|+++++.+|+ ++.+..++|..+... +
T Consensus 97 -------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~---n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 97 -------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD---NPEIVKKLATSYEEE-D 164 (906)
T ss_pred -------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHh-h
Confidence 223 33333333333344 4558899999999999999999999999999998 899999999999988 9
Q ss_pred hHHHHHHHHHHHhhCC----CcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Q 015351 278 TERARCIYKFALDHIP----KGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRK--NPMNYDIWFDYIRLEE 351 (408)
Q Consensus 278 ~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 351 (408)
.++|+.++.+|+...= .+....+|..+.......++ .=..+.++.+.. ......++.-+-..|.
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d----------~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFD----------FFLRIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccch----------HHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 9999999999987421 12223445444443222222 111222222221 1224456666778888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCchh
Q 015351 352 SVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 352 ~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
..+++++++.+++.++...|.|.-
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCcchh
Confidence 899999999999999999999764
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=2.5e-12 Score=99.86 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=91.7
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 112 SVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 112 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+.|++++..+|++..+...+|..+...|++++|...|++++..+|+++.+|..+|.++...|++++|...|+++++.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888887777
Q ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh
Q 015351 192 -QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV 225 (408)
Q Consensus 192 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 225 (408)
...+..++.++...|++++|+..|+++++..|+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 7777777888877888888888888888877754
No 116
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.46 E-value=6.4e-10 Score=97.38 Aligned_cols=255 Identities=22% Similarity=0.301 Sum_probs=185.1
Q ss_pred CcccCCHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHH
Q 015351 35 APIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVW 114 (408)
Q Consensus 35 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 114 (408)
......++-.||+.++-+|.+..-+.+++.-++ .++-++.-++.|++...-.|--+.+|..+..-.+..+++.....+|
T Consensus 21 ~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~-tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf 99 (660)
T COG5107 21 SDNIHGDELRLRERIKDNPTNILSYFQLIQYLE-TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLF 99 (660)
T ss_pred ccCCCchHHHHHHHhhcCchhHHHHHHHHHHHh-hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHH
Confidence 334556667888888888777554555444333 3455678899999999999999999999999999999999999999
Q ss_pred HHHHhccCCChHHHHHHHHHHHhccC---------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---------cCChH
Q 015351 115 ERALEVDYRNHTLWLKYAEVEMKNKF---------INHARNVWDRAVTLLPRVDQLWYKYIHMEEM---------LGNVA 176 (408)
Q Consensus 115 ~~al~~~p~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---------~~~~~ 176 (408)
.+++... -+.++|..+...-.+.++ +-+|-+.--...-..|.+...|..++.+... +.+.+
T Consensus 100 ~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 100 GRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred HHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 9999754 348899998887776652 2222222222333468889999999988754 34567
Q ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHhC-------C-----------
Q 015351 177 GARQIFERWMHWMPD--QQGWLSYIKFELRYNE-------------VERARQIYERFVQCH-------P----------- 223 (408)
Q Consensus 177 ~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~-------------~~~A~~~~~~al~~~-------p----------- 223 (408)
..+..|.+++...-. ..+|..+-.+....+. +-.|+..|++..... |
T Consensus 179 ~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r 258 (660)
T COG5107 179 KIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR 258 (660)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc
Confidence 788999999986433 8999999888765543 346777777665421 1
Q ss_pred -ChHHHHHHHHHHHHcC-----CH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 015351 224 -KVSTWIKYAKFEMKMG-----EV--DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294 (408)
Q Consensus 224 -~~~~~~~~a~~~~~~~-----~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 294 (408)
+..-|+++.......| +. ...--++++++...|- .+++|+.+.......++-++|.....+++..+|.
T Consensus 259 ~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~---~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps 334 (660)
T COG5107 259 TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYY---AEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS 334 (660)
T ss_pred cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc
Confidence 1123777877765543 21 2334567888888887 8999999999999999999999999999887775
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.6e-09 Score=97.95 Aligned_cols=115 Identities=11% Similarity=-0.028 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.+++|.+...+++...|++.++...-.-+..+.+.|++|.++.+.-....-.+. ..+.-+.|+.+.+..++|+..++
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHHh-
Confidence 5578899999999999999999998888888899999999855554322222222 22688899999999999999998
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM 189 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 189 (408)
..++.+..+....++++.+.|++++|..+|+..++.+
T Consensus 104 --~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 104 --GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred --cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4566667788888999999999999999999887644
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=6.6e-12 Score=95.89 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=101.1
Q ss_pred HHhc-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHH
Q 015351 84 IRRV-RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLW 162 (408)
Q Consensus 84 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (408)
.... ++..+..+.+|..+...|++++|..+|+-+...+|.+...|+.+|.++...|++.+|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015351 163 YKYIHMEEMLGNVAGARQIFERWMHWMP 190 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~A~~~~~~al~~~p 190 (408)
...|.++...|+.+.|++.|+.++....
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998773
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=7.7e-11 Score=104.43 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=137.1
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
|....+|+..+..+...|+++.|+..+..++...|+|+-+|...+.++.+.|+..+|.+.+++++...|+.+.++..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHH
Q 015351 168 MEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARN 246 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~ 246 (408)
.+...|++.+|+..+.+.+..+|+ +..|..++..+..+|+..++. ...++.+.-.|++++|+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~----------------~A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL----------------LARAEGYALAGRLEQAII 446 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH----------------HHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999998 899999999999888866655 345666777888888888
Q ss_pred HHHHHHHHcCC
Q 015351 247 VYERAVEKLAD 257 (408)
Q Consensus 247 ~~~~al~~~p~ 257 (408)
.+.++.+....
T Consensus 447 ~l~~A~~~~~~ 457 (484)
T COG4783 447 FLMRASQQVKL 457 (484)
T ss_pred HHHHHHHhccC
Confidence 88888877643
No 120
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.42 E-value=1.7e-11 Score=106.72 Aligned_cols=141 Identities=23% Similarity=0.514 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 015351 193 QGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMK-MGEVDRARNVYERAVEKLADDEEAEQLFVAFAE 270 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 270 (408)
-+|..|..+..+.+..+.|+.+|.++++..+ +..+|..+|.+... .++.+.|..+|+.+++.+|. +..+|..|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHH
Confidence 3799999999999999999999999996554 57899999999888 45666699999999999999 8999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCcc-hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 015351 271 FEERCKETERARCIYKFALDHIPKGR-AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWF 344 (408)
Q Consensus 271 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 344 (408)
++...++.+.|+.+|++++...|... ...+|..|+.++...|+ ++....+++++.+..|.+..+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd--------l~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD--------LESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS---------HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999988876 67899999999999998 44567778888888887655544
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.40 E-value=1.8e-11 Score=106.38 Aligned_cols=255 Identities=11% Similarity=-0.011 Sum_probs=176.7
Q ss_pred HHHHHccCHHHHHHHHHHHHhccC-CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHH
Q 015351 99 KWEESQKDFNRARSVWERALEVDY-RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAG 177 (408)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 177 (408)
+-++-.|+|..++.-++ ....+| ..........+.+..+|+++.++.-... ..+....+...++.++...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence 44556788888887666 222233 2345666777888888988766544422 122224566667776655556666
Q ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 178 ARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 178 A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
++..++..+..... +-+....+.++...|++++|++++.+. .+.+.......++...++++.|.+.++.+-+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666554433222 233344456777789999999888764 45677777888999999999999999998776
Q ss_pred cCCcHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 015351 255 LADDEEAEQLFVAFAEFEERC--KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332 (408)
Q Consensus 255 ~p~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 332 (408)
+.+ ...+.+.-+.+.... +.+.+|..+|++.....+.+ +.+....+.+....|+ +++|...++++
T Consensus 161 ~eD---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~~--------~~eAe~~L~~a 227 (290)
T PF04733_consen 161 DED---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLGH--------YEEAEELLEEA 227 (290)
T ss_dssp SCC---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT---------HHHHHHHHHHH
T ss_pred CCc---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhCC--------HHHHHHHHHHH
Confidence 655 444444444444444 46999999999988776665 7888899999999999 66799999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCch
Q 015351 333 VRKNPMNYDIWFDYIRLEESVGNK-ERAREVYERAIANVPPAE 374 (408)
Q Consensus 333 l~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~ 374 (408)
+..+|.+++++.+++.+....|+. +.+.+++.+.....|.++
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999988 667788888777899888
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=1.5e-09 Score=111.47 Aligned_cols=305 Identities=13% Similarity=0.068 Sum_probs=208.3
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-----C----hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch--
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYR-----N----HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD-- 159 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-- 159 (408)
+......+.++...|++++|...+..+....+. . ..+...++.++...|++++|...+++++...|...
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 344456677777889999999999988754221 1 23334456778889999999999999998655422
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-----C
Q 015351 160 ---QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNEVERARQIYERFVQCHP-----K 224 (408)
Q Consensus 160 ---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~ 224 (408)
.++..++.++...|+++.|...+++++..... ......++.++...|+++.|...+++++.... .
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 34566788888999999999999999875332 23455667888899999999999999887532 1
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchH
Q 015351 225 ----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD--DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 298 (408)
Q Consensus 225 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 298 (408)
..++..++.++...|++++|...+++++..... .......+..++.+....|+++.|...+.++....+.....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 123456678888889999999999999876432 11235566678889999999999999999997653321100
Q ss_pred HHHHH-----HHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 299 DLYRK-----FVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNY----DIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 299 ~~~~~-----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
..+.. ........|+ .+.|..++.......+... ..+..++.++...|++++|...+++++..
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~--------~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGD--------KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCC--------HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11110 1122233566 3446666655544222222 22567888899999999999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 370 VPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 370 ~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
....+... ..+...+.++..+ ...|+.++|+..+
T Consensus 721 ~~~~g~~~---~~a~~~~~la~a~-~~~G~~~~A~~~L 754 (903)
T PRK04841 721 ARSLRLMS---DLNRNLILLNQLY-WQQGRKSEAQRVL 754 (903)
T ss_pred HHHhCchH---HHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 43322211 1223455566676 4789999988765
No 123
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.39 E-value=2.3e-11 Score=105.95 Aligned_cols=134 Identities=26% Similarity=0.536 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN-KFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
-+|+.|.++..+.+..+.|+.+|.+|++..+.+..+|..+|.++... ++.+.|..+|+++++..|.+..+|..|+.++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999977777889999999998885 56666999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh
Q 015351 171 MLGNVAGARQIFERWMHWMPDQ----QGWLSYIKFELRYNEVERARQIYERFVQCHPKV 225 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 225 (408)
..|+.+.|+.+|++++...|.. .+|..++.++.+.|+.+...++.+++.+..|..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999987773 599999999999999999999999999998863
No 124
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.9e-11 Score=99.65 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc---CHHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK---FINHARNVWDR 150 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~ 150 (408)
+.-..-++..+..+|+|+.-|..+|.+|+.+|++..|...|.+++++.|++++++..+|..+..+. ...++...|++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 345677788888899999999999999999999999999999999999999999999998766554 46788899999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYI 199 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (408)
++..+|++..+...++..++..|++.+|...++..++..|....|..+.
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 9999999999999999999999999999999999999888755454444
No 125
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=102.18 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 172 (408)
-+..-|.-..+.++|.+|+..|.+||+++|.++-.|...+..|.+.|.++.|++-.+.++.++|.+..+|..+|..|..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34455677777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHH
Q 015351 173 GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVE 209 (408)
Q Consensus 173 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~ 209 (408)
|++++|+..|++++.++|+ ...+..+-......+...
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888887 555555555544444433
No 126
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.3e-11 Score=101.33 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=95.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhh
Q 015351 129 LKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNE 207 (408)
Q Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~ 207 (408)
-.-|.-.++.++|++|+..|.+||.++|+++..|...+..|.++|.++.|++-.+++++++|. ...|..+|..+..+|+
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 344667788899999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHHHHHhCCChH-HHHHHHHHHHHcCCHH
Q 015351 208 VERARQIYERFVQCHPKVS-TWIKYAKFEMKMGEVD 242 (408)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~-~~~~~a~~~~~~~~~~ 242 (408)
+++|+..|+++++++|+.+ .+..+.......+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999644 4455555444444443
No 127
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.32 E-value=7.9e-09 Score=91.94 Aligned_cols=102 Identities=25% Similarity=0.462 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCH
Q 015351 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNY 340 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 340 (408)
...+-..+.+++.+.|-..+|+..|.+....-|.+ ..++..+++++......+ +.-++.+|+.++.....++
T Consensus 459 ~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~s--l~l~r~miq~e~~~~sc~------l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 459 SVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFS--LDLFRKMIQFEKEQESCN------LANIREYYDRALREFGADS 530 (568)
T ss_pred eeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCcc--HHHHHHHHHHHhhHhhcC------chHHHHHHHHHHHHhCCCh
Confidence 45566677888889999999999999988877776 789999999988654433 4458999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERAIANV 370 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 370 (408)
++|..|-..+...|..+.+-.+|.||++..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ktl 560 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMKTL 560 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHHhh
Confidence 999999999999999999999999999864
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.31 E-value=1.5e-10 Score=88.53 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=95.1
Q ss_pred hcc-CCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHH
Q 015351 119 EVD-YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWL 196 (408)
Q Consensus 119 ~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 196 (408)
... ++..+..+.+|..+...|++++|..+|+-.+..+|.+...|+.+|.++...|++++|+..|.+++.++|+ +..+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 455 6777888899999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC
Q 015351 197 SYIKFELRYNEVERARQIYERFVQCH 222 (408)
Q Consensus 197 ~~~~~~~~~~~~~~A~~~~~~al~~~ 222 (408)
..|.++...|+.+.|++.|+.++..+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999886
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=3.3e-09 Score=88.25 Aligned_cols=148 Identities=10% Similarity=-0.076 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
+..|+.++..-.+.+|.+...+..+|.+|....++..|..+|++.-...|......+-.++.+.+.+.+..|..+.....
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 46689999999999999999999999999999999999999999999999999888888998888888888877665443
Q ss_pred HhC------------------------------C--CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 015351 153 TLL------------------------------P--RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYI 199 (408)
Q Consensus 153 ~~~------------------------------p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~ 199 (408)
... | +........|-+..+.|+++.|.+-|+.+++...- +-+-+.++
T Consensus 106 D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA 185 (459)
T KOG4340|consen 106 DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA 185 (459)
T ss_pred CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence 210 0 01122233333444455566666666666655444 44445555
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 015351 200 KFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~ 220 (408)
.+..+.|++..|+++..+.++
T Consensus 186 LaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 555555666666555444443
No 130
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.30 E-value=1.2e-08 Score=105.02 Aligned_cols=296 Identities=11% Similarity=0.008 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHhcCC---------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh-----HHHHHHHHHHHh
Q 015351 72 YRLRKRKEFEDLIRRVRW---------NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH-----TLWLKYAEVEMK 137 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~ 137 (408)
..++|...++++....+. .......++.++...|+++.|...+++++...|... .++..++.++..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 345666777766543221 122334456777889999999999999998655432 345667888889
Q ss_pred ccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------HHHHHHHHHHH
Q 015351 138 NKFINHARNVWDRAVTLLPRV------DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD---------QQGWLSYIKFE 202 (408)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~ 202 (408)
.|++++|...+++++...... ...+..++.++...|+++.|...+++++..... ..++..++.++
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 999999999999999764321 234567788999999999999999999875221 22345667788
Q ss_pred HHhhhHHHHHHHHHHHHHhCC----C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH----HHHHHH
Q 015351 203 LRYNEVERARQIYERFVQCHP----K--VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFV----AFAEFE 272 (408)
Q Consensus 203 ~~~~~~~~A~~~~~~al~~~p----~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~----~~~~~~ 272 (408)
...|++++|...+.+++.... . ...+..++.++...|+++.|...+.++....+.......... .....+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 888999999999999987532 1 234566788899999999999999999876443110111111 122444
Q ss_pred HHcCChHHHHHHHHHHHhhCCCcch--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC------CCHHHHH
Q 015351 273 ERCKETERARCIYKFALDHIPKGRA--EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP------MNYDIWF 344 (408)
Q Consensus 273 ~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~ 344 (408)
...|+.+.|...+.......+.... ...+...+..+...|+ .++|...+++++.... ....++.
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~--------~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ--------FDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 5689999999998876653222211 1224556677777888 5568888888877521 2345678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 345 DYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 345 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
.+|..+...|+.++|...+.+|+......+-
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 8999999999999999999999998766553
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.29 E-value=5.1e-09 Score=88.95 Aligned_cols=184 Identities=14% Similarity=0.046 Sum_probs=119.8
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHH---HHHHHHHHhccCHHHHHHHHHHHHHhCCCch---HHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLW---LKYAEVEMKNKFINHARNVWDRAVTLLPRVD---QLWY 163 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 163 (408)
++..++..|......|++++|+..|++++...|.++.+- +.+|.++.+.++++.|+..|++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 344556666777777777777777777777777765433 6667777777777777777777777776654 3455
Q ss_pred HHHHHHHHcC---------------C---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh
Q 015351 164 KYIHMEEMLG---------------N---VAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKV 225 (408)
Q Consensus 164 ~~~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 225 (408)
..|.++...+ + ..+|...|++.++..|+... ..+|...+..+... -.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~--la 175 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDR--LA 175 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHH--HH
Confidence 5554432221 1 12455556666666665210 01111111111000 01
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 226 STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288 (408)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 288 (408)
.--+..|.+|.+.|.+..|..-++.+++..|+.+...+....++..+...|..+.|..+....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 112356888999999999999999999999998888999999999999999999998876543
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.27 E-value=1.8e-10 Score=103.96 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=94.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
+...|...+..|+++.|+..|+++++.+|+++.+|..+|.++...|++++|+..+++++.++|+++.+|+.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44557778888999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 015351 174 NVAGARQIFERWMHWMPD-QQGWLSYIKFELR 204 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 204 (408)
++++|+..|+++++++|+ ..+...++.+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999888 5555555544333
No 133
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.24 E-value=2.6e-09 Score=93.55 Aligned_cols=208 Identities=15% Similarity=0.177 Sum_probs=123.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccC--CC----hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDY--RN----HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM 171 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 171 (408)
|..+...|++++|...|.++....- ++ ...+...+.++.+. ++++|+.+|++|+. +|..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~--------------~y~~ 106 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE--------------IYRE 106 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------HHHh
Confidence 6667777888888888887754211 00 12222222232222 44444444444432 2233
Q ss_pred cCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCC---C----hHHHHHHHHHHHHcCCHHH
Q 015351 172 LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRY-NEVERARQIYERFVQCHP---K----VSTWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 172 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~ 243 (408)
.|++..| ......+|.++... |++++|+..|+++.+... . ...+..++.++...|++++
T Consensus 107 ~G~~~~a-------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 107 AGRFSQA-------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp CT-HHHH-------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred cCcHHHH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 3444333 34455667788887 899999999999988642 1 3567889999999999999
Q ss_pred HHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcch---HHHHHHHHHHHHHcCCchh
Q 015351 244 ARNVYERAVEKLADD----EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA---EDLYRKFVAFEKQYGDREG 316 (408)
Q Consensus 244 A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~g~~~~ 316 (408)
|.++|++.....-.. ......++..+.+++..|++..|...+++....+|.-.. ..+...++.... .|+.+.
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D~e~ 252 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGDVEA 252 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT-CCC
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCCHHH
Confidence 999999988764331 123456677788888999999999999999988875321 233444444433 455554
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC
Q 015351 317 IEDAIVGKRRFQYEDEVRKNPMN 339 (408)
Q Consensus 317 ~~~~~~~~A~~~~~~al~~~p~~ 339 (408)
+..+..-|++...++|..
T Consensus 253 -----f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 253 -----FTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp -----HHHHCHHHTTSS---HHH
T ss_pred -----HHHHHHHHcccCccHHHH
Confidence 556666676665555533
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=5.2e-09 Score=93.07 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=136.4
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYI 199 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~ 199 (408)
.|....+++..+..+...|+++.|+..+...+...|+++.+|...++++...|+.++|.+.+++++...|+ .-++..++
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q 015351 200 KFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET 278 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 278 (408)
+.+...|++.+|+.++++.+..+| ++..|..++..|..+|+..++... ++..+.-.|++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A--------------------~AE~~~~~G~~ 441 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA--------------------RAEGYALAGRL 441 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH--------------------HHHHHHhCCCH
Confidence 999999999999999999999998 578899999999998876665544 44455567788
Q ss_pred HHHHHHHHHHHhhCCCc
Q 015351 279 ERARCIYKFALDHIPKG 295 (408)
Q Consensus 279 ~~A~~~~~~al~~~p~~ 295 (408)
+.|+..+.++.+....+
T Consensus 442 ~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 442 EQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 88888888888765433
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.24 E-value=5.7e-09 Score=86.57 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=107.8
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch---HHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH---TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD---QLWY 163 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 163 (408)
++..++..|......|++.+|+..|++++...|.++ .+.+.+|..+...|+++.|+..|++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 345667777777888888888888888887777653 6777777777888888888888888888777754 3455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh------------------
Q 015351 164 KYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKV------------------ 225 (408)
Q Consensus 164 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------------ 225 (408)
..|.++.....-. + ......+...+|+..|+..++..|+.
T Consensus 84 ~~g~~~~~~~~~~---------~-------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---------L-------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HHHHHHHHHHHHH---------H--------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccc---------h-------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 5554443321000 0 00112233445555555555555531
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 015351 226 STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERAR 282 (408)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 282 (408)
.--+..|.+|.+.|.+..|..-++.+++..|+.....+.+..++..+...|..+.|.
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 112345788888899999999999999999987777888888888888888877544
No 136
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.5e-08 Score=85.02 Aligned_cols=262 Identities=16% Similarity=0.129 Sum_probs=158.0
Q ss_pred HHccCHHHHHHHHHHHHhccCC---ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHH
Q 015351 102 ESQKDFNRARSVWERALEVDYR---NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGA 178 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A 178 (408)
....|+..|+.+++-.+..+.. +...| +|.++...|++++|...|.-+...+.-+.++|..++-++.-.|.+.+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 4556888888888887754433 34455 477889999999999999999887666689999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 179 RQIFERWMHWMPDQQGWLSY-IKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
.++-.++ |...+...+ ..+..+.|+-++ +..|...+.. ..+-.+.++.+....-.+.+|+.+|.+.+..+|.
T Consensus 111 ~~~~~ka----~k~pL~~RLlfhlahklndEk~-~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAEKA----PKTPLCIRLLFHLAHKLNDEKR-ILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHhhC----CCChHHHHHHHHHHHHhCcHHH-HHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 8887765 332222222 233333343332 2233333322 1233455566655555667777777777766655
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHH--------HHHHHHHH
Q 015351 258 DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI--------VGKRRFQY 329 (408)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~A~~~~ 329 (408)
...+-..++.++.+..-++-+.+++.--+...|++....-...-..+-.-.|...+.+.-. +..+..+.
T Consensus 184 ---y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 184 ---YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred ---hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 4555556666667777777777777777776776632211111111111122211110000 11111111
Q ss_pred ----------HHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH
Q 015351 330 ----------EDEVRKNPM----NYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRY 378 (408)
Q Consensus 330 ----------~~al~~~p~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 378 (408)
+.|++.-|. -|++..+++-.|.++++..+|..+.+. ..|..|-+.+
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~Eyi 320 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYI 320 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHH
Confidence 123333343 467888999999999999999887654 6788886533
No 137
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.19 E-value=1.9e-08 Score=88.40 Aligned_cols=280 Identities=16% Similarity=0.280 Sum_probs=190.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc
Q 015351 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV 158 (408)
Q Consensus 79 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (408)
.++.-|+.+|++...|+.+...+..+|.+++-+++|++...-.|--+.+|..+..-....+++.....+|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 5667789999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred hHHHHHHHHHHHHcCChH--HHHHHHHHHH----H---hCCC-HHHHHHHHHHHH---------HhhhHHHHHHHHHHHH
Q 015351 159 DQLWYKYIHMEEMLGNVA--GARQIFERWM----H---WMPD-QQGWLSYIKFEL---------RYNEVERARQIYERFV 219 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~--~A~~~~~~al----~---~~p~-~~~~~~~~~~~~---------~~~~~~~A~~~~~~al 219 (408)
..+|..+...-.+.++.- +++...-+|. . ..|. ...|..++.++. .+..++..+..|.+++
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 789999888777655321 2333333332 2 3455 788999887765 3456788889999998
Q ss_pred HhCC-C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH----HHHHHHhhCC
Q 015351 220 QCHP-K-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC----IYKFALDHIP 293 (408)
Q Consensus 220 ~~~p-~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~----~~~~al~~~p 293 (408)
...- + ..+|..+-.+....++. -|+++..+ ...+++..-..+....+..+... ++.+--...|
T Consensus 189 ~tP~~nleklW~dy~~fE~e~N~~-TarKfvge----------~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 189 QTPMGNLEKLWKDYENFELELNKI-TARKFVGE----------TSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred cCccccHHHHHHHHHHHHHHHHHH-HHHHHhcc----------cCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 7642 2 57888888776655432 22222211 11111111111111111111111 1111111111
Q ss_pred CcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 294 KGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
.- .-.-|..|+.++...|-.-.-..+ ..+.--+|++++...|-.+++|+.+.......++.+.|....++++..+|.
T Consensus 258 r~-s~S~WlNwIkwE~en~l~L~~~~~-~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps 334 (660)
T COG5107 258 RT-SDSNWLNWIKWEMENGLKLGGRPH-EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS 334 (660)
T ss_pred cc-ccchhhhHhhHhhcCCcccCCCcH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc
Confidence 10 012389999998865432111111 223345789999999999999999999999999999999999999988877
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.19 E-value=4.9e-10 Score=80.80 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 172 (408)
+|..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|...|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888778888888888888
Q ss_pred CChHHHHHHHHHHHHhCC
Q 015351 173 GNVAGARQIFERWMHWMP 190 (408)
Q Consensus 173 ~~~~~A~~~~~~al~~~p 190 (408)
|+++.|...+.++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888888888877666
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.18 E-value=3.5e-10 Score=102.06 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
.++.|+..|+++++.+|++..+|..+|.++...|++++|+..+++++.++|.++.+|+.+|.++...|++++|+..|+++
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHHc
Q 015351 152 VTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~ 172 (408)
+.++|+++.+...++.+....
T Consensus 97 l~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 97 ASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 999999999888887775554
No 140
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=9.1e-10 Score=95.81 Aligned_cols=201 Identities=13% Similarity=0.045 Sum_probs=145.9
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-C-CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHH
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVD-Y-RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 165 (408)
+....+...++.++...++-+.++..++..+... + .++.+....|.++...|++++|++++.+. .+.+.....
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~ 137 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALA 137 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHH
Confidence 3445566667777666566666777666655332 2 34455566667788889999998888664 456777778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCH
Q 015351 166 IHMEEMLGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEV 241 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~ 241 (408)
..++...++++.|...++.+-+.+.+ ..+...+..+......+.+|.-+|++..+..+ ++.+...++.++..+|++
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence 88999999999999999998887766 22333333333333468899999999877764 677888899999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCcc
Q 015351 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET-ERARCIYKFALDHIPKGR 296 (408)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~ 296 (408)
++|.+.++++++.+|. +++++.+++.+....|+. +.+.+.+.+.-...|.+.
T Consensus 218 ~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 218 EEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 9999999999998888 788999999998888888 667777777777888763
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2e-09 Score=90.53 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhh---hHHHHHHHHH
Q 015351 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYN---EVERARQIYE 216 (408)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~---~~~~A~~~~~ 216 (408)
.+..+..++.-++.+|++.+-|..+|.+|..+|++..|...|.+++++.|+ ++++..++.++..+. ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 444455555566666666666666666666666666666666666666666 666666665544432 2345666666
Q ss_pred HHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 217 RFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 217 ~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
+++..+| +......+|.-+++.|++.+|...++..++..|.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 6666666 3455556666666666666666666666666655
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.16 E-value=1.4e-09 Score=82.16 Aligned_cols=101 Identities=13% Similarity=0.094 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYK 164 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 164 (408)
++.++..|..+...|++++|...|++++..+|++ +.+++.+|.++...|+++.|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3567788888888888888888888888888776 4677888888888888888888888888887774 567888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+|.++...|++++|...+.++++..|+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 888888888888888888888888877
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.15 E-value=2.5e-10 Score=76.96 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCC
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK-FINHARNVWDRAVTLLP 156 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p 156 (408)
++..|..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566666666666666666666666666666666666666666666666 56666666666666665
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.13 E-value=3.3e-09 Score=85.77 Aligned_cols=119 Identities=12% Similarity=0.122 Sum_probs=95.1
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWY 163 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (408)
.|.....+..+|..+...|++++|..+|+++++..|+. ..++..+|.++...|++++|+..|++++...|++...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34566678888999999999999999999999876654 468888999999999999999999999999998888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 164 KYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 164 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
.+|.++...|+...+..-+++++ ..+++|..++++++...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCch
Confidence 88998888888777665555543 2356677777777777664
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.13 E-value=5.9e-09 Score=81.63 Aligned_cols=115 Identities=12% Similarity=0.024 Sum_probs=73.7
Q ss_pred HccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChH
Q 015351 103 SQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYKYIHMEEMLGNVA 176 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~ 176 (408)
..++...+...+++.++.+|++ ..+.+.+|.++...|++++|...|+.++...|+. +.+++.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666777777777777766 4556666777777777777777777777766543 235666677777777777
Q ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015351 177 GARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERF 218 (408)
Q Consensus 177 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 218 (408)
+|+..++... ..+. +.++...|.++...|++++|+..|+++
T Consensus 103 ~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7776665421 1111 555666666666667777776666665
No 146
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.11 E-value=3.6e-09 Score=91.83 Aligned_cols=264 Identities=11% Similarity=0.044 Sum_probs=183.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCCh----HHHHHHHHHHHhccCHHHHHHHHHHHHHhC------CCchHHHHHHHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNH----TLWLKYAEVEMKNKFINHARNVWDRAVTLL------PRVDQLWYKYIH 167 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~ 167 (408)
|.-+++.|+....+..|+.|++....+. .+|..+|..|...++|++|.++-..=+.+. -.....--.+|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 5666788899999999999998766653 466777777888888888877655444331 112234456778
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhh--------------------HHHHHHHHHHHHH
Q 015351 168 MEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNE--------------------VERARQIYERFVQ 220 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~ 220 (408)
.+...|.+++|+-+..+-+.+... ..+++.++.+|...|. ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 888889999998888777654321 6778888888875543 3456666666555
Q ss_pred hCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 015351 221 CHP-------KVSTWIKYAKFEMKMGEVDRARNVYERAVEK---LADDEEAEQLFVAFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 221 ~~p-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
... ...++-+++..|+-.|+++.|+..-+.-+.. +.+.......+.+++.++.-.|+++.|.++|++.+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 432 1245667788888899999999988876654 344344567888999999999999999999999876
Q ss_pred hCC--CcchH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHH
Q 015351 291 HIP--KGRAE--DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP------MNYDIWFDYIRLEESVGNKERAR 360 (408)
Q Consensus 291 ~~p--~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~ 360 (408)
..- .+..+ ...+.++..+.-..+ +.+|+.++.+-+.+.. ....++..+|..+...|..++|.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e--------~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKE--------VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 321 11112 222233333332222 6788888888766432 23457888999999999999999
Q ss_pred HHHHHHHhc
Q 015351 361 EVYERAIAN 369 (408)
Q Consensus 361 ~~~~~al~~ 369 (408)
.+.+..++.
T Consensus 336 ~fae~hl~~ 344 (639)
T KOG1130|consen 336 YFAELHLRS 344 (639)
T ss_pred HHHHHHHHH
Confidence 999888764
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.10 E-value=4.9e-10 Score=74.43 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=53.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD 159 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (408)
.+|..+...|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++++..|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5678888888888888888888888888888888888888888888888888888888888764
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=5.3e-08 Score=81.21 Aligned_cols=180 Identities=12% Similarity=0.025 Sum_probs=109.5
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHH
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI 181 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 181 (408)
.+..+++.|+.++..-.+.+|.+......+|.+|....++..|-.+|++.....|......+..+..+.+.+.+..|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999888888888888888888888777
Q ss_pred HHHHHHhCCC--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH
Q 015351 182 FERWMHWMPD--QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE 259 (408)
Q Consensus 182 ~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 259 (408)
....... |. ......-+.+....+++..++.+.++.-.. .+....+..|-+.++.|+++.|.+-|+.+++..+-
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy-- 176 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY-- 176 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHHHHHHHhhcCC--
Confidence 6544321 21 111111122222233333333333221100 01233334444444444444444444444444333
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 260 EAEQLFVAFAEFEERCKETERARCIYK 286 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~A~~~~~ 286 (408)
.+.+-++++....+.|+++.|.++..
T Consensus 177 -qpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 177 -QPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred -CchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444444444444444444444333
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.10 E-value=7.1e-09 Score=97.46 Aligned_cols=140 Identities=12% Similarity=0.064 Sum_probs=74.1
Q ss_pred HhcCCChHHHHHHHHH--HHHc---cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc--------CHHHHHHHHHHH
Q 015351 85 RRVRWNTGVWIKYAKW--EESQ---KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK--------FINHARNVWDRA 151 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~--~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~a 151 (408)
...|.+..+|..+.+. +... ++...|+.+|+++++.+|++..+|-.++.++.... +...+....+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3345666666555333 3322 23556777777777777777666666555443321 123344444444
Q ss_pred HHh--CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 152 VTL--LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 152 l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
+.. .|..+.++..++..+...|++++|...+++|+.++|+...|..+|.++...|+.++|...|++++..+|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 442 3444455555555555555555555555555555555445555555555555555555555555555554
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.10 E-value=7.6e-10 Score=74.55 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG-NVAGARQIFERWMHWMP 190 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 190 (408)
++.+|..+|.++...|++++|+..|.++++.+|+++.+|..+|.++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56788889999999999999999999999999998999999999999988 68899999999988877
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.09 E-value=4.5e-08 Score=81.22 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 267 (408)
+..++..|......|++.+|+..|+++....|. ..+.+.+|..+...|+++.|...+++.++.+|.++..+.+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 344445555556666666666666666666653 3456666666666666666666666666666665555555555
Q ss_pred HHHHHHH-----------cCChHHHHHHHHHHHhhCCCcchHHH--------H-------HHHHHHHHHcCCchhHHHHH
Q 015351 268 FAEFEER-----------CKETERARCIYKFALDHIPKGRAEDL--------Y-------RKFVAFEKQYGDREGIEDAI 321 (408)
Q Consensus 268 ~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~--------~-------~~~~~~~~~~g~~~~~~~~~ 321 (408)
.|..+.. .+...+|...|+..++..|++....- . ...+.++.+.|.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~-------- 156 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK-------- 156 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------
Confidence 5554432 23345778888888888887653211 1 112333444444
Q ss_pred HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHH
Q 015351 322 VGKRRFQYEDEVRKNPMNY---DIWFDYIRLEESVGNKERA 359 (408)
Q Consensus 322 ~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~~A 359 (408)
+..|..-|+.+++..|+.+ +++..++..+.+.|..+.+
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 4456666777777777653 3466666666677766643
No 152
>PRK11906 transcriptional regulator; Provisional
Probab=99.08 E-value=7.6e-09 Score=92.51 Aligned_cols=147 Identities=10% Similarity=0.085 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccC
Q 015351 73 RLRKRKEFEDLI---RRVRWNTGVWIKYAKWEESQ---------KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140 (408)
Q Consensus 73 ~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 140 (408)
..+|..+|.+++ ..+|....++-.++.++... .+..+|....+++++++|.++.+...+|.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 457999999999 99999999988888887654 345678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015351 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYER 217 (408)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~ 217 (408)
++.|...|++|+.++|+...+|+..|.+..-.|+.++|...++++++++|. ..+...+...|.. ...+.|+++|-+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 999999999999999999999999999999999999999999999999998 3333333445543 446777777655
Q ss_pred HHH
Q 015351 218 FVQ 220 (408)
Q Consensus 218 al~ 220 (408)
-.+
T Consensus 433 ~~~ 435 (458)
T PRK11906 433 ETE 435 (458)
T ss_pred ccc
Confidence 443
No 153
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.07 E-value=1.5e-06 Score=75.44 Aligned_cols=282 Identities=18% Similarity=0.104 Sum_probs=195.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHcCC
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRN--HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL-WYKYIHMEEMLGN 174 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~ 174 (408)
|.+...-||-..|+++-.++-+.-..+ +-+.+.-++.-+-.|+++.|.+-|+-++.. |..-.+ ...+---..+.|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhccc
Confidence 445556688888888888876443333 344455566777789999999999877653 332211 1111112245788
Q ss_pred hHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---CC----hHHHHHHHHHH-HHcCCHHHHH
Q 015351 175 VAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCH---PK----VSTWIKYAKFE-MKMGEVDRAR 245 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~a~~~-~~~~~~~~A~ 245 (408)
.+.|+.+-+++-...|. +=.|..........|+++.|+++.+...... ++ ...-+.-+... .-..+...|+
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999888888 6666666677777899999999887766543 22 11212222222 2334678888
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 015351 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325 (408)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A 325 (408)
..-.++++..|+ ....-..-+..+.+.|+..++-.+++.+.+..|. +.++..|... +.|+... .-
T Consensus 250 ~~A~~a~KL~pd---lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH---P~ia~lY~~a--r~gdta~-------dR 314 (531)
T COG3898 250 DDALEANKLAPD---LVPAAVVAARALFRDGNLRKGSKILETAWKAEPH---PDIALLYVRA--RSGDTAL-------DR 314 (531)
T ss_pred HHHHHHhhcCCc---cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC---hHHHHHHHHh--cCCCcHH-------HH
Confidence 888889998888 6777777888888999999999999999998887 5677766654 3354321 11
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhh
Q 015351 326 RFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRD 405 (408)
Q Consensus 326 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~ 405 (408)
.+-..+.....|+|.+..+..+..-...|++..|+.--+.+....|... +++.++++++...||-.+++.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres----------~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES----------AYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh----------HHHHHHHHHhhccCchHHHHH
Confidence 2223444556788888888888888888999999988888888888766 466678888766788777664
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.07 E-value=4e-09 Score=75.90 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRY 205 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~ 205 (408)
+|..+|..+...|++++|+..+++++...|.+..++..++.++...+++++|...|+++++..|. ...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46677777777888888888888888887777777777788887778888888888887777776 56777777777777
Q ss_pred hhHHHHHHHHHHHHHhCC
Q 015351 206 NEVERARQIYERFVQCHP 223 (408)
Q Consensus 206 ~~~~~A~~~~~~al~~~p 223 (408)
|+++.|...+.++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777776654
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.06 E-value=1.1e-08 Score=80.06 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=70.2
Q ss_pred cCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHH
Q 015351 172 LGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV----STWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 172 ~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~a~~~~~~~~~~~ 243 (408)
.++...+...+++.++..|+ ....+.++.++...|++++|...|+.++...|++ .+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555556666665555 3445555666666666666666666666655432 245666777777777777
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 244 ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL 289 (408)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 289 (408)
|+..++.. ++....+.++...|+++...|++++|+..|++++
T Consensus 104 Al~~L~~~----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQI----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhc----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77776542 1222255666667777777777777777777664
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.06 E-value=4.3e-07 Score=77.26 Aligned_cols=175 Identities=10% Similarity=0.013 Sum_probs=127.7
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHH
Q 015351 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL---WYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGW 195 (408)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~ 195 (408)
.++..++..|.-....|++++|+..|++++...|.++.+ .+.+|.++...++++.|+..|++.++.+|+ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456677888888899999999999999999999987654 478899999999999999999999999987 5666
Q ss_pred HHHHHHHHHhh------------------hHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 196 LSYIKFELRYN------------------EVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 196 ~~~~~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
+..|.+....+ ....|+..|++.++..|+.+. ..+|...+..+-..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~--- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHH---
Confidence 66665532221 234677788888888886432 12222222222221
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcch-HHHHHHHHHHHHHcCCchh
Q 015351 258 DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA-EDLYRKFVAFEKQYGDREG 316 (408)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~g~~~~ 316 (408)
-..--+..|.+|.+.|.+..|..-++.+++..|+... .+....+...+...|..+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 1223346789999999999999999999999988642 4556666677777887554
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=99.05 E-value=5.8e-09 Score=80.22 Aligned_cols=104 Identities=18% Similarity=0.036 Sum_probs=96.3
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHH
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYK 164 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (408)
...++..+..+.+|.-....|++++|..+|.-+...+|.+++.|+.+|.++...+++++|+..|..+..+.++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34445566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHW 188 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~ 188 (408)
.|.++...|+.+.|+.+|+.++..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999999884
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=7.9e-09 Score=78.06 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHH
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSY 198 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~ 198 (408)
+.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|...|++++...|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345556666666666666666666666665554 345555566666666666666666665555544 3345555
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 199 IKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
+.++...|++++|...+++++...|+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 55555555555555555555555553
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=9.7e-09 Score=82.73 Aligned_cols=98 Identities=9% Similarity=0.057 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 76 KRKEFEDLIRRVRWN--TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 76 A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+...+...++.++.+ ...|..+|..+..+|++++|...|++++...|+. +.+|..+|.++...|++++|+..|++
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444445444 5678999999999999999999999999887663 45899999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcC
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
++...|.....+..++.++...|
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhh
Confidence 99999999988888888888444
No 160
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.04 E-value=8e-07 Score=75.71 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHh--ccCCChHHHHHHHHHHHhccCHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRW--NTGVWIKYAKWEESQKDFNRARSVWERALE--VDYRNHTLWLKYAEVEMKNKFINHARNVW 148 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (408)
...+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+......+++..+...+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45567777788777776 377888889999999999999999999997 78888999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 015351 149 DRAVTLLPRVDQLWYKYIH-MEEMLGNVAGARQIFERWMHWMP---D-QQGWLSYIKFELRYNEVERARQIYERFVQCHP 223 (408)
Q Consensus 149 ~~al~~~p~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p---~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 223 (408)
..++...+.....+..... ++...|+++.|...|.+++...| . .......+..+...++++.++..+.+++...+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 198 (291)
T COG0457 119 EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP 198 (291)
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence 9999988887666666666 89999999999999999988776 2 55556666667778999999999999999987
Q ss_pred C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 015351 224 K--VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294 (408)
Q Consensus 224 ~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 294 (408)
. ...+..++..+...+.++.|...+..++...|. ....+...+..+...+..+.+...+.+++...|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 199 DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6 577889999999999999999999999999887 5666777777666778899999999999998876
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.04 E-value=8.9e-10 Score=77.37 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=43.0
Q ss_pred ccCHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHH
Q 015351 104 QKDFNRARSVWERALEVDYR--NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI 181 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 181 (408)
+|+++.|+.+|+++++..|. +...|+.+|.++...|++++|+.++++ ...+|.+...+..+|.++...|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555555555555555553 234455555555555555555555555 444555555555555555555555555555
Q ss_pred HHH
Q 015351 182 FER 184 (408)
Q Consensus 182 ~~~ 184 (408)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=1.3e-08 Score=82.18 Aligned_cols=118 Identities=9% Similarity=0.075 Sum_probs=95.1
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWL 196 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 196 (408)
.|....+++.+|..+...|++++|+..|++++...|+. ..++..+|.++...|++++|+..|+++++..|. ...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34556778888999999999999999999999887653 467888899999999999999999999998888 77788
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 197 SYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 197 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
.++.++...|+...+...+..++. .+++|.+++++++...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~-------------------~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEA-------------------LFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHH-------------------HHHHHHHHHHHHHhhCch
Confidence 888888888877776665555543 267788888888888777
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.03 E-value=2.7e-07 Score=80.88 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCc----chHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC
Q 015351 263 QLFVAFAEFEERC-KETERARCIYKFALDHIPKG----RAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337 (408)
Q Consensus 263 ~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 337 (408)
..+..+|.++... |++++|+..|++|+...... ....++...+.++...|+ +++|...|++.....-
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~--------y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR--------YEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHhh
Confidence 3444445555444 55555555555555432111 112344445555555555 4445555655554321
Q ss_pred C------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 015351 338 M------N-YDIWFDYIRLEESVGNKERAREVYERAIANVPPA 373 (408)
Q Consensus 338 ~------~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 373 (408)
+ + ...++..+.++...|+...|...+++....+|.-
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 1 1 1244556667777888889999999888887744
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=1.3e-08 Score=95.75 Aligned_cols=118 Identities=10% Similarity=0.005 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhc--cCCChHHHHHHHHHHHhccCHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQ--------KDFNRARSVWERALEV--DYRNHTLWLKYAEVEMKNKFIN 142 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~ 142 (408)
..+|+.+|+++++.+|++..+|-.++.++... ++...+....++++.. +|.++.++..+|......|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 45799999999999999999999887766543 2345666777776663 7888899999999999999999
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+|...+++|+.++|+ ..+|..+|.++...|++++|.+.|++|+.++|.
T Consensus 438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999995 789999999999999999999999999999999
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.01 E-value=3.1e-08 Score=79.77 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHH
Q 015351 225 VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKF 304 (408)
Q Consensus 225 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 304 (408)
...|..+|.++...|++++|...|++++...|++...+.+|.++|.++...|++++|+..|++++...|.. ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL--PQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHH
Confidence 34566777777777777777777777776665533344567777777777777777777777777766654 3444455
Q ss_pred HHHHH-------HcCCchhHHHHHHHHHHHHHHHHHhhCCCCH
Q 015351 305 VAFEK-------QYGDREGIEDAIVGKRRFQYEDEVRKNPMNY 340 (408)
Q Consensus 305 ~~~~~-------~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 340 (408)
+.++. ..|+...+... +++|...|++++..+|.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-FDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-HHHHHHHHHHHHHhCcccH
Confidence 55544 34443333222 4556666777777766543
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=98.99 E-value=8.1e-08 Score=86.05 Aligned_cols=170 Identities=13% Similarity=0.137 Sum_probs=132.4
Q ss_pred HHHhcCCCh---HHH----HHHHHHHHHcc---CHHHHHHHHHHHH---hccCCChHHHHHHHHHHHhc---------cC
Q 015351 83 LIRRVRWNT---GVW----IKYAKWEESQK---DFNRARSVWERAL---EVDYRNHTLWLKYAEVEMKN---------KF 140 (408)
Q Consensus 83 ~l~~~p~~~---~~~----~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------~~ 140 (408)
+....|.+. ++| +..|......+ +.+.|..+|.+|+ ..+|....++..++.++... ..
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 344457777 777 33444444443 4567889999999 89999999888888877654 25
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015351 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFV 219 (408)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al 219 (408)
..+|...-++|++++|.++.+...+|.+....++++.|...|++|+.++|+ ..+|...+.+..-.|+.++|+..+++++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HhCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015351 220 QCHPKV---STWIKYAKFEMKMGEVDRARNVYERAVE 253 (408)
Q Consensus 220 ~~~p~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~ 253 (408)
+.+|.. .+.-.....|.. ...+.|+++|-+-.+
T Consensus 400 rLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKETE 435 (458)
T ss_pred ccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhccc
Confidence 999842 222222334443 456777777765443
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.98 E-value=2.3e-08 Score=89.88 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=101.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN 174 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 174 (408)
..+..+....++++.|+.+|++..+.+|. +...++.++...++..+|++++.++++.+|.+..++...+.++...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34556666678899999999998887764 566788888888888899999999999899888888888899999999
Q ss_pred hHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015351 175 VAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFV 219 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al 219 (408)
++.|+.+.++++...|+ ...|..++.+|...|+++.|+-.++.+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999998888 8888888888888888888887766543
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=1.9e-09 Score=75.65 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRW--NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVW 148 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (408)
+.+++|+..|+++++..|. +...|+.+|.++...|++++|+.++++ ...+|.++.....+|.++.+.|++++|+.+|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3467899999999999995 467888899999999999999999999 8889988899999999999999999999999
Q ss_pred HHH
Q 015351 149 DRA 151 (408)
Q Consensus 149 ~~a 151 (408)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 169
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=3.6e-06 Score=79.79 Aligned_cols=111 Identities=13% Similarity=0.223 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh---ccCHHHHHHHHHHHHH
Q 015351 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK---NKFINHARNVWDRAVT 153 (408)
Q Consensus 77 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~ 153 (408)
+..++.-+..++.+......|..+....|++++....-..+..+.|.++.+|..+..-... .++..++...|++++.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 3444555566777777777777777777777777777777777777777777777664332 2566777777777776
Q ss_pred hCCCchHHHHHHHHHHHHc-------CChHHHHHHHHHHHHh
Q 015351 154 LLPRVDQLWYKYIHMEEML-------GNVAGARQIFERWMHW 188 (408)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~al~~ 188 (408)
.. .++.+|..++.+.... ++++..+.+|.++++.
T Consensus 179 dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 179 DY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred cc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 54 3366777777665543 3466677777777763
No 170
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.96 E-value=1.1e-05 Score=68.47 Aligned_cols=204 Identities=19% Similarity=0.213 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh-HHHHHHHH-H
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMH--WMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV-STWIKYAK-F 234 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~a~-~ 234 (408)
......+..+...+.+..+...+...+. ..+. ...+...+......+++..+...+..++...+.. ........ +
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 3333444444444444444444444443 2222 3444444444444444455555555554443322 12222222 4
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCc
Q 015351 235 EMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDR 314 (408)
Q Consensus 235 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~ 314 (408)
+...|+++.|...+.+++...|............+..+...++++.|...+.+++...+.. ....+...+..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGK- 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHccc-
Confidence 5555555555555555555333100133344444444555566666666666666655541 13445555555555554
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 315 EGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 315 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
+..|...+..++...|.....+...+..+...+..+.+...+.+++...|.
T Consensus 218 -------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 -------YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -------HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 445666666666666665555555555555555667777777777766665
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.94 E-value=3.7e-09 Score=70.95 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
...|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 356677777777777777777777777777777777777777777777777777776666655544
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.93 E-value=2.1e-05 Score=75.43 Aligned_cols=220 Identities=10% Similarity=-0.001 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
..+|.+...+.++++|+..-+...-|-...+.|..++|..+++..-..-|++......+-.+|...|+.++|..+|++++
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 46799999999999999998888888899999999999988888777788888888889999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHh
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQGWLSYIKFELRYNE---------VERARQIYERFVQC 221 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~---------~~~A~~~~~~al~~ 221 (408)
+.+|. .+....+-..|.+.+.+.+=.++--+..+..|. --.|.....+...... ..-|...+++.++.
T Consensus 105 ~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~ 183 (932)
T KOG2053|consen 105 QKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEK 183 (932)
T ss_pred hhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhcc
Confidence 99999 888888888888888887666555555667777 3445444333332222 23456667777766
Q ss_pred C-C--ChHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 222 H-P--KVSTWIKYAKFEMKMGEVDRARNVYE-RAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 222 ~-p--~~~~~~~~a~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
. + +..=...+..++..+|.+++|..++. ...+..+.- +...-..-..++...+++.+-.++-.+++...+++
T Consensus 184 ~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~--~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 184 KGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSA--NLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred CCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 5 3 22224455666778899999999994 334444431 44555566788889999999999999999988876
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=4e-08 Score=84.04 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=63.1
Q ss_pred HHHHHHHHHH-HhccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHH
Q 015351 126 TLWLKYAEVE-MKNKFINHARNVWDRAVTLLPRV---DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLS 197 (408)
Q Consensus 126 ~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~ 197 (408)
..++..+..+ ...|++++|+..|+..+..+|++ +.+++.+|.++...|++++|+..|+++++..|+ ++++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4455555543 44566777777777777776665 356666666666666666666666666666555 556666
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 198 YIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
+|.++...|+.++|+.+|+++++..|+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 666666666666666666666666664
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=3.8e-08 Score=84.18 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=91.6
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHH
Q 015351 92 GVWIKYAKWE-ESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYK 164 (408)
Q Consensus 92 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 164 (408)
..++..|..+ ...|++++|+..|+..++..|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5677777765 66799999999999999999998 5899999999999999999999999999998874 688999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+|.++...|++++|..+|+++++..|+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999998
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.92 E-value=6.9e-06 Score=78.59 Aligned_cols=227 Identities=13% Similarity=0.048 Sum_probs=166.3
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIF 182 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 182 (408)
..+++.+|.....+.++.+|+.+-+...-|....+.|..++|..+++..-...+++......+-.+|...++.++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45789999999999999999999999999999999999999998888777777888888889999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHcCCH---------HHHHHHHHHH
Q 015351 183 ERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS--TWIKYAKFEMKMGEV---------DRARNVYERA 251 (408)
Q Consensus 183 ~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~a~~~~~~~~~---------~~A~~~~~~a 251 (408)
+++++.+|+......+...+.+.+++.+-.++--+..+..|+.. .|....-++.....+ .-|...+++.
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 99999999988888888888888887765555555555777643 455554444333322 3466667777
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 015351 252 VEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALD-HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYE 330 (408)
Q Consensus 252 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 330 (408)
++..+... +..=...+-.++...|.+++|..++..-+. ..+.. ...+-..-..+....+.+. +-.++-.
T Consensus 181 l~~~gk~~-s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~-~~~l~~~~~dllk~l~~w~--------~l~~l~~ 250 (932)
T KOG2053|consen 181 LEKKGKIE-SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSA-NLYLENKKLDLLKLLNRWQ--------ELFELSS 250 (932)
T ss_pred hccCCccc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHhcChH--------HHHHHHH
Confidence 76652211 222233455666788999999999954443 33332 1344445666777777744 4556677
Q ss_pred HHHhhCCCC
Q 015351 331 DEVRKNPMN 339 (408)
Q Consensus 331 ~al~~~p~~ 339 (408)
+++..++++
T Consensus 251 ~Ll~k~~Dd 259 (932)
T KOG2053|consen 251 RLLEKGNDD 259 (932)
T ss_pred HHHHhCCcc
Confidence 778888877
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.92 E-value=3.4e-08 Score=88.88 Aligned_cols=112 Identities=20% Similarity=0.121 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.++.|+.+|+++.+.+|+ ++..+++++...++-.+|+.++.+++..+|.+..++...+.++...++++.|+.+.++
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3457899999999998875 6677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERW 185 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 185 (408)
++...|++...|..++.+|...|+++.|+..+..+
T Consensus 260 av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999777643
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.91 E-value=6.3e-06 Score=71.68 Aligned_cols=249 Identities=18% Similarity=0.084 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHH
Q 015351 68 ELADYRLRKRKEFEDLIRRVRWNTG-VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARN 146 (408)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 146 (408)
.+.|.++.|++-|+.++. +|..-. .+..+---....|+.+.|+.+-+++-..-|.-+-+|.....-.+..|+++.|++
T Consensus 131 l~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred HhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 356778889999998876 453322 222222223457999999999999999999999888888888899999999999
Q ss_pred HHHHHHHhC---CCch---HHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015351 147 VWDRAVTLL---PRVD---QLWYKYIH-MEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERF 218 (408)
Q Consensus 147 ~~~~al~~~---p~~~---~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 218 (408)
+.+...... ++.. .+-+.-+. ...-.-+...|+..-..++++.|+ ...-..-+..+.+.|+..++-++++.+
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 998776542 3211 11111111 122235677889999999999999 666667788889999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 219 VQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAV---EKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 219 l~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
.+..|+++++..|.. .+.|+. ++.-++++- ..-|+ +.+..+..+..-...|++..|+.--+.+....|..
T Consensus 290 WK~ePHP~ia~lY~~--ar~gdt--a~dRlkRa~~L~slk~n---naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre 362 (531)
T COG3898 290 WKAEPHPDIALLYVR--ARSGDT--ALDRLKRAKKLESLKPN---NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE 362 (531)
T ss_pred HhcCCChHHHHHHHH--hcCCCc--HHHHHHHHHHHHhcCcc---chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh
Confidence 999999998876643 345543 334444433 33455 78888889999999999999999999999988884
Q ss_pred chHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHhh
Q 015351 296 RAEDLYRKFVAFEKQY-GDREGIEDAIVGKRRFQYEDEVRK 335 (408)
Q Consensus 296 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~ 335 (408)
.+|..+++++.-. |+ -.+++.+.-+++..
T Consensus 363 ---s~~lLlAdIeeAetGD--------qg~vR~wlAqav~A 392 (531)
T COG3898 363 ---SAYLLLADIEEAETGD--------QGKVRQWLAQAVKA 392 (531)
T ss_pred ---hHHHHHHHHHhhccCc--------hHHHHHHHHHHhcC
Confidence 6888888888755 88 45688899999874
No 178
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.7e-06 Score=68.31 Aligned_cols=254 Identities=10% Similarity=-0.020 Sum_probs=169.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAG 177 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 177 (408)
++-++-.|+|..++..-++.-... ..+..-..+.+.+...|++...+.-...+- ...-.+...++.+...-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 344555677887777777665433 566666667777778887665444333222 1113445555666555566555
Q ss_pred HHHHHHHHHHh-CCC-HHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 178 ARQIFERWMHW-MPD-QQGWLSYI-KFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 178 A~~~~~~al~~-~p~-~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
-+......+.. ... ..+|..++ .++...|++++|.+...... +.++...-..++.+..+++-|.+.++++.+.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55444444332 222 43555554 77788889999998877732 3344445556677788889999999988877
Q ss_pred cCCcHHHHHHHHHHHHHHH----HcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 015351 255 LADDEEAEQLFVAFAEFEE----RCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYE 330 (408)
Q Consensus 255 ~p~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 330 (408)
+.+ .+...+|..+. ..+.+.+|.-+|+..-...|.. +.+....+.+....|+ +++|..+++
T Consensus 167 ded-----~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~--------~eeAe~lL~ 231 (299)
T KOG3081|consen 167 DED-----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGR--------YEEAESLLE 231 (299)
T ss_pred chH-----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcC--------HHHHHHHHH
Confidence 533 23333333333 3456889999999988866665 6788888888888898 666899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCch
Q 015351 331 DEVRKNPMNYDIWFDYIRLEESVGNKERA-REVYERAIANVPPAE 374 (408)
Q Consensus 331 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A-~~~~~~al~~~p~~~ 374 (408)
.+|..++++++.+.+++.+-...|...++ .+.+.+.....|.++
T Consensus 232 eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 232 EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 99999999999999999888888866554 445556556677766
No 179
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=4.7e-07 Score=72.18 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 172 (408)
.++..|..|-+.|-+.-|+.-|.+++.+.|.-+.++.-+|..+...|+++.|.+.|...++++|...-+..+.|-...--
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 44455677778888889999999999999999999999999999999999999999999999999888888888777778
Q ss_pred CChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhCCChHHHH-HHHHHHHHcCCHHHHHHH
Q 015351 173 GNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIY-ERFVQCHPKVSTWI-KYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 173 ~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~-~~a~~~~~~~~~~~A~~~ 247 (408)
|++.-|..-+.+..+.+|+ ...|..+.+ +.-++.+|..-+ +++... +.+.|- .+..+|. |+..+ ...
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yL--gkiS~-e~l 218 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYL--GKISE-ETL 218 (297)
T ss_pred CchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHH--hhccH-HHH
Confidence 9999999999999999888 445555443 344566666544 444443 223331 2223332 22211 223
Q ss_pred HHHHHHHcCCc----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 015351 248 YERAVEKLADD----EEAEQLFVAFAEFEERCKETERARCIYKFALDHI 292 (408)
Q Consensus 248 ~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 292 (408)
++++..-..++ ..-.+.++.+|+.+...|+.++|..+|+-++...
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33333222221 1135678889999999999999999999998743
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.91 E-value=8.4e-09 Score=68.42 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=54.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 130 KYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 130 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++..|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 56788888999999999999999999999999999999999999999999999999888886
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.88 E-value=4.8e-08 Score=85.00 Aligned_cols=254 Identities=10% Similarity=0.019 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHccCHHHHHHHHHH------HHhccCCChHHHHHHHHHHHhccCHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTG----VWIKYAKWEESQKDFNRARSVWER------ALEVDYRNHTLWLKYAEVEMKNKFIN 142 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~------al~~~p~~~~~~~~~a~~~~~~~~~~ 142 (408)
.......|+.+++....+.. +|..+|..|.-.++|++|.++-.. .+-..-......-.+|..+-..|.++
T Consensus 33 craGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fd 112 (639)
T KOG1130|consen 33 CRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFD 112 (639)
T ss_pred hhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccc
Confidence 35567899999988877654 567788888888888888875332 22222222344556788888889999
Q ss_pred HHHHHHHHHHHhCC------CchHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHH-------hCCC-----
Q 015351 143 HARNVWDRAVTLLP------RVDQLWYKYIHMEEMLGNV-------------AGARQIFERWMH-------WMPD----- 191 (408)
Q Consensus 143 ~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~al~-------~~p~----- 191 (408)
+|+.+..+-+.... ....+++.+|.+|...|+. +++.+.++.|++ +...
T Consensus 113 eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~ 192 (639)
T KOG1130|consen 113 EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRL 192 (639)
T ss_pred hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99988877776532 1346889999999877632 344455555544 3221
Q ss_pred --HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---CCcH
Q 015351 192 --QQGWLSYIKFELRYNEVERARQIYERFVQCHP---K----VSTWIKYAKFEMKMGEVDRARNVYERAVEKL---ADDE 259 (408)
Q Consensus 192 --~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~ 259 (408)
...+-.+++.|+-.|+++.|+..-+.-+.+.. + ..++.+++.++.-.|+++.|.+.|+..+... .+..
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 44666777888889999999988877665532 2 3568889999999999999999999887653 2223
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--cc--hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q 015351 260 EAEQLFVAFAEFEERCKETERARCIYKFALDHIPK--GR--AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 334 (408)
......+.++..|.-..++++|+.++.+-+.+... +. -...+..++..+...|. .++|....++.++
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~--------h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE--------HRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHH
Confidence 34667788999999999999999999998764321 10 12334445555666666 3445555544444
No 182
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.88 E-value=2.7e-07 Score=82.10 Aligned_cols=112 Identities=20% Similarity=0.344 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHccC------------HHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHH
Q 015351 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKD------------FNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHA 144 (408)
Q Consensus 77 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A 144 (408)
...|++.++.+|.++.+|+.++.+....-. .+.-+.+|++|++.+|++..++..+.....+..+.+..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 456889999999999999999988766422 35667899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHc---CChHHHHHHHHHHHHh
Q 015351 145 RNVWDRAVTLLPRVDQLWYKYIHMEEML---GNVAGARQIFERWMHW 188 (408)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~ 188 (408)
...+++++..+|+++.+|..+..+.... -.++..+.+|.++++.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999999999999998877662 3577888888888764
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.88 E-value=7.4e-07 Score=69.34 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015351 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM--PDQQGWLSYIKFELRYNEVERARQIYER 217 (408)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~A~~~~~~ 217 (408)
+++....-..+.+...|+ ..-.+.++......|++.+|...|++++.-- .+..+.+.+++.....+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 444444444455555555 3345566666666677777777777666521 2255666666666666777777777777
Q ss_pred HHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 218 FVQCHP---KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL 289 (408)
Q Consensus 218 al~~~p---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 289 (408)
..+.+| +++..+.++..+...|++..|+..|+.++...|+ +.....|+.++.++|+.++|..-+....
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 776665 3556666777777777777777777777777666 5666667777777776665554444433
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.86 E-value=5.2e-06 Score=68.76 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHH---HHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH---TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL---WYK 164 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~ 164 (408)
+..|+.-|.-.+..|++++|...|+.+...+|.++ .+.+.++..+.+.++++.|+...++-+..+|+++++ .+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 45677777777788888888888888887777654 666777777888888888888888888888776643 222
Q ss_pred HHHHHHHc-----CC---hHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHH
Q 015351 165 YIHMEEML-----GN---VAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYA 232 (408)
Q Consensus 165 ~~~~~~~~-----~~---~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a 232 (408)
.|..+... .+ ...|...|+..++..|+ +++-..+.. ++..+ ...=+..|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~--------------~~d~L-----A~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK--------------LNDAL-----AGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH--------------HHHHH-----HHHHHHHH
Confidence 22222111 11 12334444444444444 111000000 00000 01113457
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 233 KFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
.+|.+.|.+-.|..-++.+++..|+.....+.+..+...+...|-.+.|...-.-.-...|++
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 888899999999999999999988866677788888888888888888876654333334444
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.85 E-value=1.9e-07 Score=69.25 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC---chHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR---VDQLWYKY 165 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~ 165 (408)
.+++..|..+-..|+.++|+.+|++++...+.. ..+++.+|..+...|++++|..++++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467788888888999999999999998865443 468888999999999999999999999988887 77788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 015351 166 IHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al~ 187 (408)
+..+...|+.++|++.+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888999998888877654
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=2.7e-08 Score=67.76 Aligned_cols=68 Identities=28% Similarity=0.293 Sum_probs=55.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 165 (408)
..++...+++++|++++++++..+|.++.+|..+|.++...|++.+|...|+++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888776655443
No 187
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.9e-07 Score=81.75 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---------------hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN---------------HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
....-|..+++.|++..|...|++++..-+.. ..+++.++.++.+.+.+.+|+..-.++|...|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 34567889999999999999999998654321 257778888888889999999999999999999
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCC
Q 015351 158 VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVE-RARQIYERFVQCHP 223 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p 223 (408)
|..+.+.-|+++...|+++.|+..|+++++..|+ ..+-..+..+-.+...+. ...+.|.+++...+
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999888 666677776666655544 44778888877653
No 188
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=3.3e-05 Score=73.42 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+..+.|..+|.+.-+ +..+-++|...|.+++|.++.+.-=.++- -..++.+|..+...++++.|++.|++
T Consensus 814 gMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 344557777766532 34556777788888888877765322222 24678888888888999999988886
Q ss_pred H----------HHhCCC----------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------------------
Q 015351 151 A----------VTLLPR----------VDQLWYKYIHMEEMLGNVAGARQIFERWMHWM--------------------- 189 (408)
Q Consensus 151 a----------l~~~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------------- 189 (408)
+ +..+|. ++.+|..+|.+....|+.+.|+.+|..|-...
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence 5 223332 35688889999999999999999998875421
Q ss_pred -CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 190 -PDQQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 190 -p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
.+..+.+.++..|...|++.+|+.+|.++-.
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1244567788889999999999998877644
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=98.80 E-value=2.1e-07 Score=71.71 Aligned_cols=102 Identities=8% Similarity=-0.042 Sum_probs=89.5
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY 198 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 198 (408)
+.++..+..+.+|.-....|++++|..+|+-....+|.+++.|..+|.++...+++++|+..|..+..+.++ +...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 344455677888888899999999999999999999999999999999999999999999999999888877 7778888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 015351 199 IKFELRYNEVERARQIYERFVQC 221 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~ 221 (408)
|.++...|+.+.|+..|+.++..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999999999884
No 190
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=9.8e-06 Score=76.87 Aligned_cols=187 Identities=17% Similarity=0.176 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHH------------HHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVW------------ERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV 158 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (408)
..+|..+|+++.+..+.+-|.-++ +++. .+|+.. -...|.+..+.|-.++|..+|.+.-+.+
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~-q~~~e~--eakvAvLAieLgMlEeA~~lYr~ckR~D--- 830 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ-QNGEED--EAKVAVLAIELGMLEEALILYRQCKRYD--- 830 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH-hCCcch--hhHHHHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 468999999998877776665443 3332 244433 3345666778888899998888875532
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH----------HHhCC-----
Q 015351 159 DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERF----------VQCHP----- 223 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------l~~~p----- 223 (408)
.+-.+|...|.+++|.++-+.-=+++ -...+++++..+...++++.|+++|+++ +..+|
T Consensus 831 -----LlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 831 -----LLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred -----HHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 33455666677776665544211100 0455667777666677777777777654 22222
Q ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------------------cHHHHHHHHHHHHHHHHcCChH
Q 015351 224 ------KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD------------------DEEAEQLFVAFAEFEERCKETE 279 (408)
Q Consensus 224 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~~~~~~~~~~~~~~~~ 279 (408)
+..+|.-+|.++...|+.+.|+.+|..|-..+.- ...+....+.+++.|...|++.
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~ 984 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVV 984 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHH
Confidence 2345666677777777777777777765443210 0013556777888888888988
Q ss_pred HHHHHHHHHH
Q 015351 280 RARCIYKFAL 289 (408)
Q Consensus 280 ~A~~~~~~al 289 (408)
+|...|.+|-
T Consensus 985 ~Av~FfTrAq 994 (1416)
T KOG3617|consen 985 KAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHH
Confidence 8888887763
No 191
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.78 E-value=1.2e-05 Score=69.28 Aligned_cols=292 Identities=12% Similarity=0.040 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHH---HHHHHHHccCHHHHHHHHHH----HHhccCC--ChHHHHHHHHHHHhccCHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIK---YAKWEESQKDFNRARSVWER----ALEVDYR--NHTLWLKYAEVEMKNKFINHA 144 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~----al~~~p~--~~~~~~~~a~~~~~~~~~~~A 144 (408)
.+|+....+.+..-.+...-+.. +......+|.++++...--. +.+.+.. -.+++..++..+...-++.++
T Consensus 23 ~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt 102 (518)
T KOG1941|consen 23 EKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKT 102 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44555555555443333332333 33445556666665543322 2222211 135677777777777788888
Q ss_pred HHHHHHHHHhCCCch-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhhHHHHH
Q 015351 145 RNVWDRAVTLLPRVD-----QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNEVERAR 212 (408)
Q Consensus 145 ~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~ 212 (408)
+.+-+..+.+....+ .....++..+...+.++++++.|++|++...+ ..++..++.++.+..++++|.
T Consensus 103 ~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal 182 (518)
T KOG1941|consen 103 ISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKAL 182 (518)
T ss_pred HHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHh
Confidence 887777776654333 56677888899999999999999999986432 568899999999999999999
Q ss_pred HHHHHHHHhCCC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHcCCh
Q 015351 213 QIYERFVQCHPK-----------VSTWIKYAKFEMKMGEVDRARNVYERAVEKL---ADDEEAEQLFVAFAEFEERCKET 278 (408)
Q Consensus 213 ~~~~~al~~~p~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~ 278 (408)
-+..++.+...+ .-+.+.++-.+...|+...|.+..+++.+.. .+.+....-...++++|...|+.
T Consensus 183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~ 262 (518)
T KOG1941|consen 183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL 262 (518)
T ss_pred hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence 999999886532 1235567777889999999999999987753 34444566778899999999999
Q ss_pred HHHHHHHHHHHhhCCC--cch--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC----CCC--HHHHHHHHH
Q 015351 279 ERARCIYKFALDHIPK--GRA--EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN----PMN--YDIWFDYIR 348 (408)
Q Consensus 279 ~~A~~~~~~al~~~p~--~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~----p~~--~~~~~~~~~ 348 (408)
+.|..-|+.|+..... +.+ +......+.......-...+- -=.|++.-+++++.- .+. ..+...++.
T Consensus 263 e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~---~Crale~n~r~levA~~IG~K~~vlK~hcrla~ 339 (518)
T KOG1941|consen 263 ERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKIC---NCRALEFNTRLLEVASSIGAKLSVLKLHCRLAS 339 (518)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccc---ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999875322 111 122222222221110000000 001444444444432 221 245677889
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 015351 349 LEESVGNKERAREVYERAIA 368 (408)
Q Consensus 349 ~~~~~g~~~~A~~~~~~al~ 368 (408)
+|...|.-++-..-+.+|-+
T Consensus 340 iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 340 IYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHhccchhHHHHHHHHHHH
Confidence 99888877776666666543
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.77 E-value=3.6e-06 Score=65.57 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=65.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 015351 216 ERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKL-ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294 (408)
Q Consensus 216 ~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 294 (408)
.+.+...|+..-.+.++..+.+.|++.+|...|++++.-. .+ ++.+.+.+++.....+++..|...+++..+..|.
T Consensus 80 ~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 80 TEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 3333444444444555555555555555555555554321 12 3445555555555555555555555555554444
Q ss_pred cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 295 GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVY 363 (408)
Q Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 363 (408)
...+.-...++..+...|.+. .|+..|+.++...| .+..-..|+.++.++|...++..-+
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a--------~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYA--------DAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred cCCCCchHHHHHHHHhcCCch--------hHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 333333444444444455422 24555555555444 3444455555555555444444333
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.76 E-value=2.6e-08 Score=66.75 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV 134 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 134 (408)
+.+++|+..|++++..+|++..++..+|.++...|++++|..++++++..+|+++.++..++.+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 4567899999999999999999999999999999999999999999999999998888777653
No 194
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=6.7e-06 Score=78.04 Aligned_cols=284 Identities=14% Similarity=0.230 Sum_probs=198.3
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
+.+.+.......=....|.-+.=+..++.-+.+++.+......|..++...|+.++....-..+..+.|.++.+|..++.
T Consensus 76 ~~sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~ 155 (881)
T KOG0128|consen 76 ESSSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLK 155 (881)
T ss_pred CccCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 33334333333333334455556667777788899999999999999999999999999999999999999999998886
Q ss_pred HHHH---cCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHhCC-----ChHHHHHH-
Q 015351 168 MEEM---LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRY-------NEVERARQIYERFVQCHP-----KVSTWIKY- 231 (408)
Q Consensus 168 ~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------~~~~~A~~~~~~al~~~p-----~~~~~~~~- 231 (408)
-... .++...+...|++++.-.-...+|..++++.... ++++.-+.+|.+++.... ...+|..+
T Consensus 156 d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~ 235 (881)
T KOG0128|consen 156 DELSMTQSEERKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYR 235 (881)
T ss_pred HHHhhccCcchhHHHHHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHH
Confidence 5543 3567788899999998766688998888776654 457788999999987643 23444444
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--H-HHHHcCChHHHHH-------HHHHHHhhCCCcchHH
Q 015351 232 --AKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA--E-FEERCKETERARC-------IYKFALDHIPKGRAED 299 (408)
Q Consensus 232 --a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--~-~~~~~~~~~~A~~-------~~~~al~~~p~~~~~~ 299 (408)
-..+...-..++...++...+...-+......-|.... . ......+++.|.. .|++.++..|.. ..
T Consensus 236 E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~--~q 313 (881)
T KOG0128|consen 236 EFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIK--DQ 313 (881)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHH--HH
Confidence 44455555567788888888776422111111111111 1 1223444544444 344445555543 57
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCchhHHH
Q 015351 300 LYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLE-ESVGNKERAREVYERAIANVPPAEEKRY 378 (408)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~ 378 (408)
.|..|+.++...|++.. -...+++++...+.+...|+.++... ...+-.+.+...+-++++.+|.... +
T Consensus 314 ~~~~yidfe~~~G~p~r--------i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd--L 383 (881)
T KOG0128|consen 314 EWMSYIDFEKKSGDPVR--------IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD--L 383 (881)
T ss_pred HHHHHHHHHHhcCCchH--------HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH--H
Confidence 89999999999999653 45678999999999999999999876 3456677788889999999998774 6
Q ss_pred HHHHH
Q 015351 379 WQRYI 383 (408)
Q Consensus 379 w~~~~ 383 (408)
|..+.
T Consensus 384 ~~ral 388 (881)
T KOG0128|consen 384 WKRAL 388 (881)
T ss_pred HHHHH
Confidence 66654
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.73 E-value=5e-07 Score=67.05 Aligned_cols=97 Identities=22% Similarity=0.124 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 015351 194 GWLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA 269 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 269 (408)
+++..+.++-..|+.++|+.+|++++....+ ..+++.++..+...|++++|..++++++...|+++.+..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 3445555555556666666666666554321 234556666666666666666666666666555444455555555
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 015351 270 EFEERCKETERARCIYKFALD 290 (408)
Q Consensus 270 ~~~~~~~~~~~A~~~~~~al~ 290 (408)
..+...|+.++|...+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 566666666666666555443
No 196
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.71 E-value=1.5e-05 Score=68.75 Aligned_cols=295 Identities=13% Similarity=0.035 Sum_probs=193.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHH---HHHHHhccCHHHHHHHHH----HHHHhCCC--chHHHHHHHHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKY---AEVEMKNKFINHARNVWD----RAVTLLPR--VDQLWYKYIHM 168 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~---a~~~~~~~~~~~A~~~~~----~al~~~p~--~~~~~~~~~~~ 168 (408)
|--+....++++|+..+.+.+..-.+...-+..+ .......|.+++++..-- -+...+.. .-+++.++++-
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455677777777777775443333333333 334555566555443322 22222211 12567777887
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-------ChHHHHHHHHHH
Q 015351 169 EEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFELRYNEVERARQIYERFVQCHP-------KVSTWIKYAKFE 235 (408)
Q Consensus 169 ~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~a~~~ 235 (408)
+...-++.+++.+-+-.+..... ......++......+.++++++.|+.+++... ..+++..++.++
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 88888888888776666654322 34556677888888999999999999998642 146789999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCcc--hHHHHHHH
Q 015351 236 MKMGEVDRARNVYERAVEKLADD-------EEAEQLFVAFAEFEERCKETERARCIYKFALDHI--PKGR--AEDLYRKF 304 (408)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~--~~~~~~~~ 304 (408)
.+..++++|.-+..++.+....- .-..-..+.++..+...|+...|.+..+++.+.. ..+. .......+
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 99999999999999988764320 0113345667788889999999999999998742 1221 23456678
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCCc
Q 015351 305 VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM------NYDIWFDYIRLEESVGNKE-----RAREVYERAIANVPPA 373 (408)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~-----~A~~~~~~al~~~p~~ 373 (408)
++++...|+ .+.|..-|++|...... .+.+....+.......-.. .|+++-+|+++.....
T Consensus 253 aDIyR~~gd--------~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 253 ADIYRSRGD--------LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHhccc--------HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 899999999 55588888888764322 2345555666654433333 4888888888876655
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCChhHHh
Q 015351 374 EEKRYWQRYIYLWINYALYEELDAGDMERTR 404 (408)
Q Consensus 374 ~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~ 404 (408)
+.... ...+...++.+| ...|.-++-+
T Consensus 325 G~K~~---vlK~hcrla~iY-rs~gl~d~~~ 351 (518)
T KOG1941|consen 325 GAKLS---VLKLHCRLASIY-RSKGLQDELR 351 (518)
T ss_pred hhhHH---HHHHHHHHHHHH-HhccchhHHH
Confidence 54333 456777888888 4677765543
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.2e-05 Score=66.57 Aligned_cols=192 Identities=12% Similarity=0.059 Sum_probs=126.3
Q ss_pred HHHHHHHHccCHHHHHHH-HHHHHhccCCChHHHHH-HHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 96 KYAKWEESQKDFNRARSV-WERALEVDYRNHTLWLK-YAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
.++.+...-++.+.-+.- ++......-.+..+|.. -|.+++..|++++|.....+. .+.++...-..+..+..
T Consensus 77 ~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~ 151 (299)
T KOG3081|consen 77 LLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMH 151 (299)
T ss_pred HHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHH
Confidence 334433333443333333 33333333333334444 455778888899998777663 22445555566777888
Q ss_pred ChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 015351 174 NVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQC-HPKVSTWIKYAKFEMKMGEVDRARNVYE 249 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~a~~~~~~~~~~~A~~~~~ 249 (408)
+++-|...++++.+++.+ ..+-..+..+....+.+.+|.-+|+..-.. .|++.+....+.++..+|++++|..+++
T Consensus 152 r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 888899889888887765 222222233333345688889999988884 4678888888999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCc
Q 015351 250 RAVEKLADDEEAEQLFVAFAEFEERCKETERAR-CIYKFALDHIPKG 295 (408)
Q Consensus 250 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~ 295 (408)
.++..++. .+++..++..+-...|...++. +...+.....|..
T Consensus 232 eaL~kd~~---dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 232 EALDKDAK---DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHhccCC---CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999888 6888888888777777765554 4455555566665
No 198
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.4e-05 Score=64.04 Aligned_cols=178 Identities=16% Similarity=0.190 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
|...-|+--|.+++...|.-++++.-+|-.+...|+++.|.+.|+..++++|...-+....|....-.|++.-|.+-+.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 44556999999999999999999999999999999999999999999999999999998888888889999999999999
Q ss_pred HHHhCCCch--HHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHhCCC--
Q 015351 151 AVTLLPRVD--QLWYKYIHMEEMLGNVAGARQ-IFERWMHWMPDQQGWLS-YIKFELRYNEVERARQIYERFVQCHPK-- 224 (408)
Q Consensus 151 al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~-- 224 (408)
--+.+|++| .+|..+ -.+.-++.+|.. +.+|+-+.+.. -|-- +..++. |.+. -...++++.....+
T Consensus 159 fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e--~WG~~iV~~yL--gkiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 159 FYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKSDKE--QWGWNIVEFYL--GKIS-EETLMERLKADATDNT 230 (297)
T ss_pred HHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhccHh--hhhHHHHHHHH--hhcc-HHHHHHHHHhhccchH
Confidence 999999877 345433 234456777764 55666554432 2221 122222 2211 11223333332211
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 015351 225 ------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLA 256 (408)
Q Consensus 225 ------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 256 (408)
.+.++-+|..+...|+.++|..+|+-++...-
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35688899999999999999999999987643
No 199
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-06 Score=76.75 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 015351 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 342 (408)
..+++++.++.+.+++..|+...+++|...|++ +......+..+...|+ ++.|+..|+++++..|+|..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e--------~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNN--VKALYRRGQALLALGE--------YDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhCCCcHHH
Confidence 445666666666666666666666666666665 5555556666666666 445666666666666666666
Q ss_pred HHHHHHHHHHcCCHH-HHHHHHHHHHhcCC
Q 015351 343 WFDYIRLEESVGNKE-RAREVYERAIANVP 371 (408)
Q Consensus 343 ~~~~~~~~~~~g~~~-~A~~~~~~al~~~p 371 (408)
-..++.+-.+...+. ...++|.+++...+
T Consensus 328 ~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 328 RAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 666666654444333 33666666665544
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=4.4e-06 Score=65.90 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh-----HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNH-----TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 166 (408)
+-+..=|.-++.+|++++|..-|..||...|..+ .++...|.+..+++..+.|+.-..++++++|.+..+....+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3455567778888999999999999998888754 45666777888888888888888888888888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 167 HMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
.+|.....++.|+.-|.+.+..+|.
T Consensus 176 eayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 8888888888888888888888886
No 201
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.62 E-value=5.1e-06 Score=74.01 Aligned_cols=144 Identities=17% Similarity=0.310 Sum_probs=116.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccC------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHH
Q 015351 112 SVWERALEVDYRNHTLWLKYAEVEMKNKF------------INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179 (408)
Q Consensus 112 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 179 (408)
.-|++.++.+|.++.+|+.++.+.-..-. .+.-+.+|++|++.+|++..++..+........+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46788899999999999999987655422 456788999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCC----C---------------hHHHHHHHHHHH
Q 015351 180 QIFERWMHWMPD-QQGWLSYIKFELRY---NEVERARQIYERFVQCHP----K---------------VSTWIKYAKFEM 236 (408)
Q Consensus 180 ~~~~~al~~~p~-~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p----~---------------~~~~~~~a~~~~ 236 (408)
.-+++++..+|+ ..+|..|..+.... -.++..+..|.+++.... . ..++..++.++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999998 99999999877653 347788888888776421 0 134566677777
Q ss_pred HcCCHHHHHHHHHHHHHHc
Q 015351 237 KMGEVDRARNVYERAVEKL 255 (408)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~ 255 (408)
+.|-.+.|..+++-.++.+
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFN 184 (321)
T ss_pred HCCchHHHHHHHHHHHHHH
Confidence 8888888888888887764
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.61 E-value=1.7e-06 Score=65.26 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 267 (408)
+..+..-|.-..+.|++++|++.|+......|. ..+.+.++..+...+++++|...+++.++.+|.++..+-+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 455566666677778888888888888888772 4667778888888888888888888888888887666677777
Q ss_pred HHHHHHHcCC---------------hHHHHHHHHHHHhhCCCcc
Q 015351 268 FAEFEERCKE---------------TERARCIYKFALDHIPKGR 296 (408)
Q Consensus 268 ~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~ 296 (408)
.|........ ...|...|++.++..|++.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 7766666554 7788899999999888873
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.61 E-value=3.7e-07 Score=62.09 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=53.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
..++...+++++|+.++++++..+|+++..|..+|.++...|++++|...|+++++..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 457788889999999999999999999999999999999999999999999999998887
No 204
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.60 E-value=3.4e-05 Score=64.01 Aligned_cols=174 Identities=14% Similarity=0.101 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHP----KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVA 267 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 267 (408)
+..|..-|....+.|++++|.+.|+.+....| ..++.+.++..+.+.++++.|+...++-+..+|.++...-+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 33444445555555666666666666555555 23455555555566666666666666666666654444444444
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHhhCCCcch---------------HHHHHHHHHHHHHcCCchhHHHHHHHH
Q 015351 268 FAEFEERC--------KETERARCIYKFALDHIPKGRA---------------EDLYRKFVAFEKQYGDREGIEDAIVGK 324 (408)
Q Consensus 268 ~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (408)
.|..+... .-...|..-|+..+...|++.. ...=...+.++.+.|. +..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~--------~~A 185 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA--------YVA 185 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------hHH
Confidence 44433321 1234455555566666665431 1112234556666676 444
Q ss_pred HHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 015351 325 RRFQYEDEVRKNPMN---YDIWFDYIRLEESVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 325 A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
|..-++.+++..|+. .+.+..+...|...|-.++|... .+.|..++.+.
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s 237 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence 777788888877664 45677788889999999999874 55566554444
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.57 E-value=1.7e-06 Score=72.24 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHHH
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIK 200 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~ 200 (408)
.+..|.-+...|++..|...|..-++..|++ +++++.||+++..+|+++.|..+|.++++..|+ ++..+.++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3444445555566666666666666666553 345555666666666666666666666655554 455555555
Q ss_pred HHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 201 FELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 201 ~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
+..+.|+.+.|..+|+++++..|.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 555555555555555555555553
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=4.3e-06 Score=69.90 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHH
Q 015351 162 WYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAK 233 (408)
Q Consensus 162 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~ 233 (408)
.+..+.-+...|++..|...|...++..|+ +.+.+-||+++..+|++++|..+|..+.+..|+ ++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 344444556667788888888888887776 667777777777777777777777777777763 567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 234 FEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 234 ~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
++..+|+.++|..+|+++++.+|+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 777777777777777777777777
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.51 E-value=3.1e-07 Score=55.14 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAE 133 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 133 (408)
.+|..+|..+...|++++|+.+|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456667777777777777777777777777777777766654
No 208
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.48 E-value=2.6e-06 Score=66.41 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC----------HHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc---
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKD----------FNRARSVWERALEVDYRNHTLWLKYAEVEMKNK--- 139 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--- 139 (408)
++.|++.++.....+|.+++.++.+|-.+..+.+ +++|+.-|+.||.++|+..+++..+|..+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4568888999999999999999888887766533 345667777777788888888777777776665
Q ss_pred --------CHHHHHHHHHHHHHhCCCch
Q 015351 140 --------FINHARNVWDRAVTLLPRVD 159 (408)
Q Consensus 140 --------~~~~A~~~~~~al~~~p~~~ 159 (408)
.+++|..+|++|+..+|++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 24555555555555555543
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.48 E-value=1.1e-05 Score=60.87 Aligned_cols=68 Identities=16% Similarity=0.017 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD 159 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (408)
..++.-|.-.+..|++++|++.|+.+....|.. ..+.+.++..+...+++++|+..+++-++++|+++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 345555556666666666666666666555543 34555556666666666666666666666665554
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.48 E-value=8.7e-07 Score=79.49 Aligned_cols=70 Identities=13% Similarity=-0.029 Sum_probs=66.3
Q ss_pred hcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHH---HHHHHHHHHhccCHHHHHHHHHHHHHhC
Q 015351 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTL---WLKYAEVEMKNKFINHARNVWDRAVTLL 155 (408)
Q Consensus 86 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~~ 155 (408)
.+|+++..|..+|..+...|++++|+..|+++++++|++..+ |+.+|.++..+|++++|+..+++|+...
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999865 9999999999999999999999999973
No 211
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00025 Score=57.64 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=77.3
Q ss_pred CChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHH
Q 015351 173 GNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRY-NEVERARQIYERFVQCHPK-------VSTWIKYAKFEMK 237 (408)
Q Consensus 173 ~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~-------~~~~~~~a~~~~~ 237 (408)
+++++|..++++++++..+ ......++.+|... .++++|+..|+++-+.... ...++..+.+-.+
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 3566666666666655443 22334566666554 7788888888887765431 3456666777778
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 238 MGEVDRARNVYERAVEKLADDEE----AEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 238 ~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
.+++.+|+.+|++.....-+++. ....++..+.+++-..+.-.+...+++-.+.+|.-
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 88888888888887765444210 12233444555556677777777777777777764
No 212
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.42 E-value=5.1e-06 Score=64.78 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc----------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 107 FNRARSVWERALEVDYRNHTLWLKYAEVEMKNK----------FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
++.|++.++.....+|.+++.+..+|..+.... -+++|+.-|+.|+.++|+...++..+|..+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 678999999999999999999999988777654 3567888888888888888888888887776554
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.40 E-value=2e-06 Score=77.24 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=66.7
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL---WYKYIHMEEMLGNVAGARQIFERWMHWM 189 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~ 189 (408)
.+|+++..|+.+|..+...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999998854 9999999999999999999999999973
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.39 E-value=1e-06 Score=52.92 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
+.+|..+|..+...|++++|+..|+++++.+|+++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578888999999999999999999999999998888888775
No 215
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.36 E-value=0.0012 Score=60.09 Aligned_cols=145 Identities=17% Similarity=0.260 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cCC--------
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHP-----KVSTWIKYAKFEMKMGEVDRARNVYERAVEK-LAD-------- 257 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~-------- 257 (408)
...|..++.+..+.|.++.|...+.++....+ .+.+.+..+.++...|+..+|+..++..++. ...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 78899999999999999999999999988653 4677888999999999999999999988872 111
Q ss_pred ----------------------cHHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH
Q 015351 258 ----------------------DEEAEQLFVAFAEFEERC------KETERARCIYKFALDHIPKGRAEDLYRKFVAFEK 309 (408)
Q Consensus 258 ----------------------~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 309 (408)
......++..+|.+.... +..+.+...|..+++.+|.. ...|..++.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~k~~~~~a~~~~ 303 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW--EKAWHSWALFND 303 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--HHHHHHHHHHHH
Confidence 122356778888888887 89999999999999999886 568888887765
Q ss_pred HcCCchh---------HHHHHHHHHHHHHHHHHhhCCC
Q 015351 310 QYGDREG---------IEDAIVGKRRFQYEDEVRKNPM 338 (408)
Q Consensus 310 ~~g~~~~---------~~~~~~~~A~~~~~~al~~~p~ 338 (408)
..-+.+. ...-....|+..|-+++...+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 4321111 1111144466666666666665
No 216
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00071 Score=66.22 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=116.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChH
Q 015351 97 YAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVA 176 (408)
Q Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 176 (408)
.|.+....+-+++|..+|.+- .-+..+..- +....++.+.|.+.-+++ +.+.+|..+|....+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 355556666677777776652 111111111 122334555555544443 23566777777777777777
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh----HHHH-----------------------
Q 015351 177 GARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKV----STWI----------------------- 229 (408)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~----------------------- 229 (408)
+|++.|-++ .++..|....+...+.|.+++-++++..+.+....+ .+.+
T Consensus 1122 dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i 1197 (1666)
T KOG0985|consen 1122 DAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANI 1197 (1666)
T ss_pred HHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhH
Confidence 777666554 235556666666666677777776666666544222 2222
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHH
Q 015351 230 -KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFE 308 (408)
Q Consensus 230 -~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 308 (408)
..|.-++..|.++.|.-+|. +..-|..++..+...|++..|...-++|-. ...|......+
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~-----------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns-------~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS-----------NVSNFAKLASTLVYLGEYQGAVDAARKANS-------TKTWKEVCFAC 1259 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHHHHhhhccc-------hhHHHHHHHHH
Confidence 22222333333333333332 244466666666677777777766665422 34454444333
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 015351 309 KQYGDREGIEDAIVGKRRFQYEDEVRKN-PMNYDIWFDYIRLEESVGNKERAREVYERAIANVP 371 (408)
Q Consensus 309 ~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 371 (408)
...+... +.+...++ --+.+-+-.+...|...|-+++-+.+++.++....
T Consensus 1260 vd~~EFr-------------lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER 1310 (1666)
T KOG0985|consen 1260 VDKEEFR-------------LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLER 1310 (1666)
T ss_pred hchhhhh-------------HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH
Confidence 3222100 11111111 01234445566677777777777777777665443
No 217
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.32 E-value=1.4e-07 Score=80.27 Aligned_cols=231 Identities=13% Similarity=0.006 Sum_probs=142.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
...-|.-|+++|.|++|+.+|.+++..+|.++-.+...+..|++...+..|..-...|+.++.....+|...+..-...|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45668888999999999999999999999999889999999999999999999999999998888888888888888889
Q ss_pred ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CC----hHH--HHHHHHHHHHcCCHHHHH
Q 015351 174 NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCH-PK----VST--WIKYAKFEMKMGEVDRAR 245 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~----~~~--~~~~a~~~~~~~~~~~A~ 245 (408)
...+|..-++.++.+.|. .++-..++.+-. ..++ ++..++..-. |- .+. .-.-|..+...|.++.+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~-~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i 254 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER-KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPV 254 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh-hHHhhcCCCCCccccchhhhccccCcchhhhhhhccccce
Confidence 999999999999999988 444333333211 1111 1111111000 00 000 111234445566677777
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 015351 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325 (408)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A 325 (408)
..+-+.+....+ +..+-.+ +..+.+..+++.++.-..+++...|.. ...+..-+....-.|. ..++
T Consensus 255 ~~~~~~~A~~~~---~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~--~~~~s~~~~A~T~~~~--------~~E~ 320 (536)
T KOG4648|consen 255 VDVVSPRATIDD---SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP--MPDTSGPPKAETIAKT--------SKEV 320 (536)
T ss_pred eEeeccccccCc---cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc--CcccCCCchhHHHHhh--------hhhc
Confidence 777666655444 2222222 444445556666666666665544432 1111111111111122 3345
Q ss_pred HHHHHHHHhhCCCCHHHH
Q 015351 326 RFQYEDEVRKNPMNYDIW 343 (408)
Q Consensus 326 ~~~~~~al~~~p~~~~~~ 343 (408)
...|+.++...|.+...-
T Consensus 321 K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 321 KPTKQTAVKVAPAVETPK 338 (536)
T ss_pred Ccchhheeeeccccccch
Confidence 666777777777654443
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.31 E-value=3.2e-05 Score=56.65 Aligned_cols=94 Identities=18% Similarity=0.093 Sum_probs=77.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcC
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD----QLWYKYIHMEEMLG 173 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~ 173 (408)
|-.....|+.+.|++.|.+++...|..+.++...++.+.-+|+.++|+.-+.+++++..+.. .++...|.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45556678999999999999999999999999999999999999999999999998865433 45677788888888
Q ss_pred ChHHHHHHHHHHHHhCCC
Q 015351 174 NVAGARQIFERWMHWMPD 191 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~ 191 (408)
+.+.|+.-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888776543
No 219
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.31 E-value=1.8e-05 Score=57.91 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=67.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhh
Q 015351 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-----QQGWLSYIKFELRYN 206 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~ 206 (408)
|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+.-+.+++++... ...+..-+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 445667778888888888888888888888888888888888888888888888776544 455666666777777
Q ss_pred hHHHHHHHHHHHHHhC
Q 015351 207 EVERARQIYERFVQCH 222 (408)
Q Consensus 207 ~~~~A~~~~~~al~~~ 222 (408)
+.+.|+.-|+.+-+..
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777776666553
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=5.3e-05 Score=62.58 Aligned_cols=138 Identities=10% Similarity=0.045 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CcchHHHHH
Q 015351 227 TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP----KGRAEDLYR 302 (408)
Q Consensus 227 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~ 302 (408)
+...++.++...|.+.-....+.+.++.+|.. .+.+...++.+-++.|+.+.|..+|+++-+... ......+..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~--~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ--EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 44567788888999999999999999988553 788899999999999999999999997654321 111134444
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 015351 303 KFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
..+.++...++ +..|...|.+++..+|.++..-.+.+-++.-.|+...|++.++.++...|...
T Consensus 257 n~a~i~lg~nn--------~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNN--------FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccc--------hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 55555555555 55688889999999999999999999999999999999999999999999754
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.28 E-value=0.0003 Score=63.80 Aligned_cols=218 Identities=11% Similarity=0.087 Sum_probs=118.5
Q ss_pred hccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015351 137 KNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYE 216 (408)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~ 216 (408)
+..+.+.-++.-.+|++++|++..+|..+++ .......+|..+|+++++..... +.........|.. ++
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~~------~e 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHGHF------WE 248 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHh---hchhhhhhcccch------hh
Confidence 3445556666666777777777666665553 22344566777777766643210 0000000011110 01
Q ss_pred HHHHh--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CC
Q 015351 217 RFVQC--HPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH-IP 293 (408)
Q Consensus 217 ~al~~--~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p 293 (408)
-.... ++-.-+-..+|.+..+.|+.++|++.++..++.+|.. +...++.++..++...+.+.++..++.+-=+. .|
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111 1123344567888888888888888888888877641 25667888888888888888888888775322 23
Q ss_pred CcchHHHHHHHHHHH-HHcCCchhHH---H----HHHHHHHHHHHHHHhhCCCCHHHHHHHHHH------HHHcCCHHHH
Q 015351 294 KGRAEDLYRKFVAFE-KQYGDREGIE---D----AIVGKRRFQYEDEVRKNPMNYDIWFDYIRL------EESVGNKERA 359 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~-~~~g~~~~~~---~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~------~~~~g~~~~A 359 (408)
.+ ..+...-+-+. +..++.-..+ . .....|.+...+|++.||+-+..++..=.+ ..+.|+ .+|
T Consensus 328 kS--Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEA 404 (539)
T PF04184_consen 328 KS--ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEA 404 (539)
T ss_pred ch--HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHH
Confidence 33 22222222211 1122210000 0 002347889999999999988776553222 234454 677
Q ss_pred HHHHHHHHhc
Q 015351 360 REVYERAIAN 369 (408)
Q Consensus 360 ~~~~~~al~~ 369 (408)
+.+---.+..
T Consensus 405 iaYAf~hL~h 414 (539)
T PF04184_consen 405 IAYAFFHLQH 414 (539)
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 222
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.27 E-value=0.00089 Score=61.01 Aligned_cols=127 Identities=16% Similarity=0.253 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCc------
Q 015351 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE-AEQLFVAFAEFEERCKETERARCIYKFALDH-IPKG------ 295 (408)
Q Consensus 224 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~------ 295 (408)
....|+.++.+..+.|.++.|...+.++....+.... .+.+.+..++++-..|+..+|+..++..++. ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 3578999999999999999999999998886533211 5788899999999999999999999988871 1111
Q ss_pred -------------------------chHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015351 296 -------------------------RAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLE 350 (408)
Q Consensus 296 -------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 350 (408)
....++..++.+..... .. ......+.+...|..++..+|.....|..+|.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~-~~-~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY-SK-LSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc-cc-cccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 01344555555555550 00 0001156789999999999999999999999887
Q ss_pred HH
Q 015351 351 ES 352 (408)
Q Consensus 351 ~~ 352 (408)
..
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 54
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00042 Score=57.44 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=100.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHH
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVTLL-PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYI 199 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~ 199 (408)
.+.++.++...|.+.-....+.+.+..+ |..+.+...++.+..+.|+.+.|...|++.-+.... .-+....+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455666777778888888888888877 556777778888888888888888888765443221 33344455
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 015351 200 KFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 272 (408)
.++.-.+++-.|...|.+++..+|. +.+..+.|.++.-.|+...|.+.++.++...|....+..+..++..++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 6666677777888888888777763 455666677777778888888888888888877544444555554443
No 224
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=4e-05 Score=60.64 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=51.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHH
Q 015351 131 YAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVER 210 (408)
Q Consensus 131 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 210 (408)
=|.-++..|++++|..-|..||.++|..+.--. .-+|..-+.+..+++..+.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r----------------------------sIly~Nraaa~iKl~k~e~ 152 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEER----------------------------SILYSNRAAALIKLRKWES 152 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHH----------------------------HHHHhhhHHHHHHhhhHHH
Confidence 355556666666666666666666665321000 1122233344444555555
Q ss_pred HHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 211 ARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 211 A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
|+.-+.++++++|+ ..+....|.+|.+...+++|+.-|.+.++.+|.
T Consensus 153 aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 153 AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 55555555555553 344445555555555666666666666666555
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0016 Score=53.10 Aligned_cols=130 Identities=13% Similarity=0.154 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchH------HHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC-------H
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ------LWYKYIHMEEML-GNVAGARQIFERWMHWMPD-------Q 192 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~-------~ 192 (408)
.+...+.++ +.+++.+|..++++++++..+-.. .+..+|.+|... .++++|+..|+++-..... .
T Consensus 76 ~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 344444444 445899999999999998765433 345788888776 8999999999999875543 4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-------h-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 193 QGWLSYIKFELRYNEVERARQIYERFVQCHPK-------V-STWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
..++..+......+++.+|+.+|++.....-+ . ..++.-|.+++...+.-.+...+++-.+.+|.
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 45566677777889999999999998775432 1 23455666777778888888888888888887
No 226
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.0005 Score=61.97 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=109.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHH-HHh------CCC---HHHHHHHH
Q 015351 130 KYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERW-MHW------MPD---QQGWLSYI 199 (408)
Q Consensus 130 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~------~p~---~~~~~~~~ 199 (408)
.....+....+...+..-.+.++....+++........++...|++.+|...+-.. +.. .|. .-.|.++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 33445566666777776677777777788888888899999999999998877543 222 222 34578899
Q ss_pred HHHHHhhhHHHHHHHHHHHHHh---------CC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH
Q 015351 200 KFELRYNEVERARQIYERFVQC---------HP----------KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~~---------~p----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 260 (408)
.+..+.|.+.-+..+|.++++. .| +..+.++.|..+...|++-.|.++|.++...+-.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--- 367 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--- 367 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc---
Confidence 9999999999999999999851 11 2356788899999999999999999999998877
Q ss_pred HHHHHHHHHHHHHH
Q 015351 261 AEQLFVAFAEFEER 274 (408)
Q Consensus 261 ~~~~~~~~~~~~~~ 274 (408)
+|.+|+.++.+++.
T Consensus 368 nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 368 NPRLWLRLAECCIM 381 (696)
T ss_pred CcHHHHHHHHHHHH
Confidence 79999999998874
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.22 E-value=8.3e-05 Score=67.23 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-------------------------hHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-------------------------HTLW 128 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------~~~~ 128 (408)
++.++.-.+||+.+|++.++|..++.-. ...+.+|..+|+++++..... ..+-
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 3456777888888888888888776633 334677777777777432110 1223
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 129 LKYAEVEMKNKFINHARNVWDRAVTLLPR--VDQLWYKYIHMEEMLGNVAGARQIFERW 185 (408)
Q Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a 185 (408)
..+|.+..+.|+.++|++.|+..++.+|. +..+...+..++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 44555666666666666666666655543 3345556666666666666666665554
No 228
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.5e-05 Score=63.46 Aligned_cols=84 Identities=15% Similarity=0.034 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
++++.|+..|.++|..+|..+..|...+.++++..+++.+..-..+++++.|+.+...+.+|........+++|+.++++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34466888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHh
Q 015351 151 AVTL 154 (408)
Q Consensus 151 al~~ 154 (408)
+..+
T Consensus 104 a~sl 107 (284)
T KOG4642|consen 104 AYSL 107 (284)
T ss_pred HHHH
Confidence 8655
No 229
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.00032 Score=63.17 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHH-HHhcCC--------ChHHHHHHHHHHHHccCHHHHHHHHHHHHh-c--------cC--------
Q 015351 69 LADYRLRKRKEFEDL-IRRVRW--------NTGVWIKYAKWEESQKDFNRARSVWERALE-V--------DY-------- 122 (408)
Q Consensus 69 ~~~~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~--------~p-------- 122 (408)
+.+++.+|.+.+-.. +...|. .--.|..+|-+.+..|.+..+..+|.+|++ . .|
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 445556666555432 344444 223588999999999999999999999995 1 11
Q ss_pred -CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 015351 123 -RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM 171 (408)
Q Consensus 123 -~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 171 (408)
.+-++.+..|..+...|++-.|.++|.++++.+..+|.+|..+++++..
T Consensus 332 nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 332 NKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2347888899999999999999999999999999999999999998764
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.18 E-value=3e-06 Score=58.40 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhc---c----CCChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEV---D----YRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
..++..+|.++..+|++++|+..|++++.. . |.-..++..+|.++...|++++|+..++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555566666666666666666665532 1 11123444445555555555555555555444
No 231
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2e-05 Score=64.03 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=83.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAG 177 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 177 (408)
|+.+.....+..|+..|.++|..+|..+..|...+.++++.++++.+..--.+++++.|+.....+.+|........++.
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44455556788888899999999999888888889999998899999888899999999888888889988888888999
Q ss_pred HHHHHHHHHHhCC------CHHHHHHHHHH
Q 015351 178 ARQIFERWMHWMP------DQQGWLSYIKF 201 (408)
Q Consensus 178 A~~~~~~al~~~p------~~~~~~~~~~~ 201 (408)
|+..++++..... ..++|..+..+
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999888865321 15666655543
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.16 E-value=2.4e-06 Score=47.72 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=31.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 015351 328 QYEDEVRKNPMNYDIWFDYIRLEESVGNKERARE 361 (408)
Q Consensus 328 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 361 (408)
+|+++++.+|+++.+|+++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.16 E-value=4e-06 Score=57.74 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---C-C---chHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLL---P-R---VDQLWYKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
..++..+|.++...|++++|+..|+++++.. + + ...++..+|.++...|++++|+..++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555556666666666666666655431 1 1 123344555555555555555555555544
No 234
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.13 E-value=6.1e-06 Score=69.52 Aligned_cols=94 Identities=18% Similarity=0.383 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHH-HHhccCHHHHHHHHHHHHHhCC
Q 015351 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV-EMKNKFINHARNVWDRAVTLLP 156 (408)
Q Consensus 78 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al~~~p 156 (408)
-.|.++....|+++..|..++....+.|-+.+...+|..++..+|.++++|..-+.. +...++++.++..|.++++.+|
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 455677778899999999999999999999999999999999999999999885554 5667899999999999999999
Q ss_pred CchHHHHHHHHHHHH
Q 015351 157 RVDQLWYKYIHMEEM 171 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~ 171 (408)
++|.+|..+-++...
T Consensus 174 ~~p~iw~eyfr~El~ 188 (435)
T COG5191 174 RSPRIWIEYFRMELM 188 (435)
T ss_pred CCchHHHHHHHHHHH
Confidence 999999988776543
No 235
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.13 E-value=1.6e-05 Score=68.11 Aligned_cols=124 Identities=18% Similarity=0.100 Sum_probs=103.4
Q ss_pred cccCCHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHH
Q 015351 36 PIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWE 115 (408)
Q Consensus 36 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (408)
++....+++|+.+.+.-.. +..+-. ++-++.|+.+|.+.+..+|.++..+...|..|++...+..|..-+.
T Consensus 85 ~vd~I~~~LL~~~SEiKE~--------GN~yFK-QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 85 PVDPIAQQLLKKASEIKER--------GNTYFK-QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred CccHHHHHHHHhhHHHHHh--------hhhhhh-ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 4555677777777663222 222222 2334779999999999999999999999999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015351 116 RALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168 (408)
Q Consensus 116 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 168 (408)
.|+.++.....+|...+..-...|+..+|..-+++++.+.|.+.++-..++.+
T Consensus 156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988877666654
No 236
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.12 E-value=2.9e-06 Score=47.41 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=19.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHccCHHHHH
Q 015351 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRAR 111 (408)
Q Consensus 80 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 111 (408)
|+++|+.+|+++.+|..+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.02 E-value=0.0027 Score=56.81 Aligned_cols=170 Identities=11% Similarity=0.056 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCC--HHHHH
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTL----LPRVDQLWYKYIHMEEM---LGNVAGARQIFERWMHWMPD--QQGWL 196 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~--~~~~~ 196 (408)
++...+...|....+++.-+.+.+..-.. .++.+.+-..+|-.+.+ .|+.++|+.++..++..... ++++-
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 44444445555555666555555555444 23344555555555555 56666666666664433222 55555
Q ss_pred HHHHHHHHh---------hhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HHcCCcHH
Q 015351 197 SYIKFELRY---------NEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAV-------EKLADDEE 260 (408)
Q Consensus 197 ~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al-------~~~p~~~~ 260 (408)
..|.+|.+. ...++|+..|.++.+..|+.-.-++++.++...|...+...-.++.. ........
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 555544422 23677888888888887765555666666665554322221111111 11111001
Q ss_pred HHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 261 AEQLF--VAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 261 ~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
....| -.++.+..-.|++++|...++++++..|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 23333 456777777899999999999999887664
No 238
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.01 E-value=0.0084 Score=57.13 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWE 115 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (408)
+++++|...+ +.++..|+....|..++.+.+..|+.--|..+|.
T Consensus 458 ~df~ra~afl-es~~~~~da~amw~~laelale~~nl~iaercfa 501 (1636)
T KOG3616|consen 458 GDFDRATAFL-ESLEMGPDAEAMWIRLAELALEAGNLFIAERCFA 501 (1636)
T ss_pred CchHHHHHHH-HhhccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4456665444 4567889999999999998888887776666654
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00027 Score=60.61 Aligned_cols=145 Identities=14% Similarity=0.031 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCC---hHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV-DYRN---HTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+|-...++.+...|.+.-+|..--..+.-+|+...-...+++.+-. +|+- ..+.-.|+-.+.+.|-+++|.+.-++
T Consensus 121 ~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~r 200 (491)
T KOG2610|consen 121 EAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADR 200 (491)
T ss_pred HHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHh
Confidence 3666777888888888888887777888888888888888887754 5444 45555667777788888888888888
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-----QQGWLSYIKFELRYNEVERARQIYERFV 219 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al 219 (408)
+++++|.+.-+....+.++...|++.++.+...+--..-.. ...|-..+.++...+.++.|+.+|.+-+
T Consensus 201 alqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 201 ALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 88888887777777788888888888887776553221111 2233444556666678888888886644
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.97 E-value=0.0017 Score=58.08 Aligned_cols=168 Identities=11% Similarity=0.036 Sum_probs=121.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc----cCCChHHHHHHHHHHHh---ccCHHHHHHHHHHHHH-hCCCchHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEV----DYRNHTLWLKYAEVEMK---NKFINHARNVWDRAVT-LLPRVDQL 161 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~-~~p~~~~~ 161 (408)
++++...+.-.|....+|+.-+++.+..-.. -++.+.+-..||..+.+ .|+.++|+.++..++. ..+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4456667777788889999999999988765 56678888999999988 8999999999999554 45677899
Q ss_pred HHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHH----HHHHHH---HHHH-HhC--
Q 015351 162 WYKYIHMEEML---------GNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVE----RARQIY---ERFV-QCH-- 222 (408)
Q Consensus 162 ~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----~A~~~~---~~al-~~~-- 222 (408)
+..+|++|... ...++|+..|.++++..|+.-.-.+++.++...|... +..++- ...+ +..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 99999988552 2468899999999999988433445555555444322 222222 2211 111
Q ss_pred -CChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 223 -PKVSTW--IKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 223 -p~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
+....| -.++.+..-.|++++|.+.+++++...|.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 223444 34566667889999999999999998766
No 241
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.014 Score=52.91 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCC---hHHHHHHHHHHHH-ccCHHHHHHHHHHHHhc---cCCCh----HHHHHHHHHHHhcc-CH
Q 015351 74 LRKRKEFEDLIRRVRWN---TGVWIKYAKWEES-QKDFNRARSVWERALEV---DYRNH----TLWLKYAEVEMKNK-FI 141 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~-~g~~~~A~~~~~~al~~---~p~~~----~~~~~~a~~~~~~~-~~ 141 (408)
..++++.+......|.+ +...+.+|.+.+. ..+++.|+..++++..+ -|... ++...++.++.... .+
T Consensus 26 kk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~ 105 (629)
T KOG2300|consen 26 KKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF 105 (629)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC
Confidence 35777777777666653 3456777777654 68899999999998743 45543 44556777777666 78
Q ss_pred HHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 142 NHARNVWDRAVTLLPRVD----QLWYKYIHMEEMLGNVAGARQIFERWM 186 (408)
Q Consensus 142 ~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al 186 (408)
..|...+++++++....+ .+.+.++++.....++..|.+.+.-..
T Consensus 106 ~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga 154 (629)
T KOG2300|consen 106 PPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGA 154 (629)
T ss_pred chHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccc
Confidence 888999999999876544 445677888888889999988865443
No 242
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0067 Score=50.54 Aligned_cols=223 Identities=13% Similarity=0.078 Sum_probs=160.3
Q ss_pred ccCCHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-ccCHHHHHHHHH
Q 015351 37 IQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEES-QKDFNRARSVWE 115 (408)
Q Consensus 37 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~ 115 (408)
+.|.-.+-+++.+..+..- ....+..++|..+-+.+|..+|.+-.+|.-.-.+... ..+..+=...+.
T Consensus 34 v~I~Yte~fr~~m~YfRAI-----------~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 34 VKIAYTEDFRDVMDYFRAI-----------IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred eEeeechhHHHHHHHHHHH-----------HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4565667777777776332 2222334679999999999999999999877666655 356788888999
Q ss_pred HHHhccCCChHHHHHHHHHHHhccCHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HH
Q 015351 116 RALEVDYRNHTLWLKYAEVEMKNKFIN-HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQ 193 (408)
Q Consensus 116 ~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 193 (408)
+.+..+|.+..+|...-.+....|++. .=+...+.++..+..+-.+|...--+....+.++.-+......++.+-- ..
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999888888888877 7788889999999888999998888888889999988888888876543 55
Q ss_pred HHHHHHHHHHH-h-----hhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH-cC--CHHHHHHHHHHHHHHcCCcHHHHH
Q 015351 194 GWLSYIKFELR-Y-----NEVERARQIYERFVQCHPK-VSTWIKYAKFEMK-MG--EVDRARNVYERAVEKLADDEEAEQ 263 (408)
Q Consensus 194 ~~~~~~~~~~~-~-----~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~-~~--~~~~A~~~~~~al~~~p~~~~~~~ 263 (408)
+|..---+... . -..+.-+.+....+...|+ ..+|.-+..++.. .| ...+...+....+...|.. +|.
T Consensus 183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~--sP~ 260 (318)
T KOG0530|consen 183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKR--SPF 260 (318)
T ss_pred hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCC--Chh
Confidence 66543211111 1 2244556777788888884 6789888888875 44 2445555555555333332 566
Q ss_pred HHHHHHHHH
Q 015351 264 LFVAFAEFE 272 (408)
Q Consensus 264 ~~~~~~~~~ 272 (408)
++-.+..++
T Consensus 261 lla~l~d~~ 269 (318)
T KOG0530|consen 261 LLAFLLDLY 269 (318)
T ss_pred HHHHHHHHH
Confidence 666666665
No 243
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.94 E-value=0.00021 Score=60.53 Aligned_cols=138 Identities=20% Similarity=0.382 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHH----------------------HHHHHHHHHHhccC
Q 015351 65 DSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFN----------------------RARSVWERALEVDY 122 (408)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~----------------------~A~~~~~~al~~~p 122 (408)
.-+|+.. .-+.+..||.-|.+......-+..|........... +..-.|.++....|
T Consensus 26 s~dE~~~-IvktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff 104 (435)
T COG5191 26 SPDELRR-IVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFF 104 (435)
T ss_pred CHHHHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCC
Confidence 3444433 245678888888776666666666666554432111 11224566667789
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH-HHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 015351 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI-HMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIK 200 (408)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~ 200 (408)
+++.+|..++....+.|-+.+.-.+|.++++.+|.+.++|...+ .-+...++++.++.+|.++++.+|. +.+|..+..
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999998744 4456689999999999999999999 999999986
Q ss_pred HHH
Q 015351 201 FEL 203 (408)
Q Consensus 201 ~~~ 203 (408)
++.
T Consensus 185 ~El 187 (435)
T COG5191 185 MEL 187 (435)
T ss_pred HHH
Confidence 654
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0052 Score=50.64 Aligned_cols=164 Identities=14% Similarity=0.129 Sum_probs=82.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCChHHH------HHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDYRNHTLW------LKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 169 (408)
.-+..+....++++|..++.++.+-.-++...| -..+.+......+.++..+|++|.. +|
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~--------------lY 101 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE--------------LY 101 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HH
Confidence 335556666788888888888876544443322 2233344444556666666666644 34
Q ss_pred HHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHH
Q 015351 170 EMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK-------VSTWIKYAKFEMKMGEVD 242 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~a~~~~~~~~~~ 242 (408)
...|.++.|...++++-+.- ...+++.|+.+|++++..... .+.+-..+.++.+...++
T Consensus 102 ~E~GspdtAAmaleKAak~l--------------env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKAL--------------ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHhCCcchHHHHHHHHHHHh--------------hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 44455555555554443321 123455555555555544321 223444455555555555
Q ss_pred HHHHHHHHHHH------HcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 015351 243 RARNVYERAVE------KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 243 ~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
+|-..+.+-.. ..|+ ....+...+.++.-..++..|..+|+...+
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~---~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNS---QCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHHHHHHhhhHHHHHhhccc---HHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 55444443221 1222 334444444555555566666666665544
No 245
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.91 E-value=0.001 Score=61.31 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHH-HHccCHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWE-ESQKDFNRARSVWERALEVDYRN--HTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
-.......++.+|.+..... ++.+| ...|+..+|..++..++-..|.. -...+.+|.++.+.|...+|--++..|+
T Consensus 198 ~~~~~~~glq~~~~sw~lH~-~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~ 276 (886)
T KOG4507|consen 198 IGHLIHEGLQKNTSSWVLHN-MASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAAL 276 (886)
T ss_pred HHHHHHHhhhcCchhHHHHH-HHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhc
Confidence 45566677788887765554 45555 45899999999999999765543 2467889999999999999999998888
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
...|....-++.++.++...+.+......|..+.+..|.
T Consensus 277 ~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 277 DDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred cCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 887776666888999999999999888888888888876
No 246
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.91 E-value=0.0047 Score=58.73 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcC-ChhHHhhhc
Q 015351 338 MNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAG-DMERTRDVY 407 (408)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g-~~~~A~~~~ 407 (408)
.-+.+...++.++...|++++|.+.|-.|++.+.-+-. |..-+---+. +.+ +..| ..+.|...|
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntynit---wcqavpsrfd-~e~--ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT---WCQAVPSRFD-AEF--IRAGNKPEEAVEMF 1057 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch---hhhcccchhh-HHH--HHcCCChHHHHHHh
Confidence 35677888999999999999999999999998776652 3221111111 233 3455 677777665
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0019 Score=54.82 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=101.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHH
Q 015351 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFE 308 (408)
Q Consensus 229 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 308 (408)
+.-+.-....|++.+|...|..++...|. +..+...++.++...|+.+.|..++...-.....+.... ....+.+.
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll 213 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELL 213 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHH
Confidence 33344456788999999999999999888 788889999999999999999888876433222221111 22234455
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 015351 309 KQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYL 385 (408)
Q Consensus 309 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l 385 (408)
.+..+..+ ...+++.+..+|++.++-+.++..+...|+.+.|.+.+-..++.+-.......-+.++.+
T Consensus 214 ~qaa~~~~---------~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~ 281 (304)
T COG3118 214 EQAAATPE---------IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL 281 (304)
T ss_pred HHHhcCCC---------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 54444332 334678888999999999999999999999999999988888775544333344444444
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00094 Score=57.41 Aligned_cols=155 Identities=11% Similarity=0.040 Sum_probs=111.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCc---hHHHHHHHHHHHHcC
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRV---DQLWYKYIHMEEMLG 173 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~~~~~~ 173 (408)
+.+....|+..+|...+++.++..|.+.-+|..--..+.-.|+...-...+++.+-. +|+- ..+.-.++-.+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344456788888888888888888888888877777888888888888888888776 5554 344556666777788
Q ss_pred ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCHHHHHHH
Q 015351 174 NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-----VSTWIKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~a~~~~~~~~~~~A~~~ 247 (408)
-+++|...-+++++++|. .=+-...+.++.-.|++.++.++..+.-..-.. ..-|-..+.++...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888888888876 434455667777778888888877664432221 12244556677777888888888
Q ss_pred HHHHH
Q 015351 248 YERAV 252 (408)
Q Consensus 248 ~~~al 252 (408)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87543
No 249
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.013 Score=48.87 Aligned_cols=237 Identities=15% Similarity=0.172 Sum_probs=157.1
Q ss_pred cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChH-HHHHHH
Q 015351 105 KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK-FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVA-GARQIF 182 (408)
Q Consensus 105 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~A~~~~ 182 (408)
..-..|..+-+.++..+|.+..+|...-.+....+ +..+=...+.+.+..+|.+-.+|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 34566778888999999999999988777766655 6778889999999999999999999988888899887 777888
Q ss_pred HHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHH
Q 015351 183 ERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMK-MG-----EVDRARNVYERAVEK 254 (408)
Q Consensus 183 ~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~-~~-----~~~~A~~~~~~al~~ 254 (408)
+.++..+.. -.+|..---+....+.++.-+.+..+.++.+- +..+|...--+... .| ..+.-..+..+.+..
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~ 216 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL 216 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh
Confidence 888886655 67777777677777889999999999988764 55666543222211 22 223445667788888
Q ss_pred cCCcHHHHHHHHHHHHHHHH-cC--ChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHHH
Q 015351 255 LADDEEAEQLFVAFAEFEER-CK--ETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG--DREGIEDAIVGKRRFQY 329 (408)
Q Consensus 255 ~p~~~~~~~~~~~~~~~~~~-~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~A~~~~ 329 (408)
.|. +...|..+.-++.. .| ...+........+...|.. .+.+...+..++...+ .....++ +..+|..+|
T Consensus 217 vP~---NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~-sP~lla~l~d~~~e~~l~~~~~~~~-~a~~a~~ly 291 (318)
T KOG0530|consen 217 VPN---NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKR-SPFLLAFLLDLYAEDALAYKSSAEE-LARKAVKLY 291 (318)
T ss_pred CCC---CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCC-ChhHHHHHHHHHHHHHhhccccchH-HHHHHHHHH
Confidence 898 78899888777775 44 2333444444443222222 2445555555442110 0000011 133466666
Q ss_pred HHHH-hhCCCCHHHHHHH
Q 015351 330 EDEV-RKNPMNYDIWFDY 346 (408)
Q Consensus 330 ~~al-~~~p~~~~~~~~~ 346 (408)
+..- +.+|-....|...
T Consensus 292 ~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 292 EDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred HHHhhccCcHHHHHHHHH
Confidence 6543 6666666666544
No 250
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00082 Score=55.17 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHh--------ccCCCh----------HHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALE--------VDYRNH----------TLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
+.+...-|+-++..|++.+|...|..|+. ..|.++ .++..|++++...|++-++++.-...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45677778888899999999999988872 345543 567778888888888888888888888
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
...|++..+++..|..+...=+.++|..-|.+++..+|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 889988888888888888888888888888888888887
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.79 E-value=0.001 Score=52.05 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCC----------------------hHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRN----------------------HTLWLKYAEVEMKNKFINHARNVWDRAVTLL 155 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 155 (408)
+......|+.+.+...+++++..-... ..+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 334445567777777777777543221 1233334444444555555555555555555
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 156 PRVDQLWYKYIHMEEMLGNVAGARQIFERW 185 (408)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 185 (408)
|.+..+|..+..++...|+...|...|+++
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 555555555555555555555555555444
No 252
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.039 Score=59.53 Aligned_cols=309 Identities=12% Similarity=0.070 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHH-HHHhccCHHHHHHHHH--
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAE-VEMKNKFINHARNVWD-- 149 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~-- 149 (408)
...|.++|++++..+|................|.+...+...+-.....+....-|..++. .....++++.-.....
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~ 1544 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDR 1544 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcc
Confidence 3457778888887777777666666666666777777776666655555554444544433 3344444443333221
Q ss_pred -----------HH-HHhCCCchHHHHHHHHH-H----------HHcCChHHHHHHHHHHH-------------HhCCC--
Q 015351 150 -----------RA-VTLLPRVDQLWYKYIHM-E----------EMLGNVAGARQIFERWM-------------HWMPD-- 191 (408)
Q Consensus 150 -----------~a-l~~~p~~~~~~~~~~~~-~----------~~~~~~~~A~~~~~~al-------------~~~p~-- 191 (408)
++ ++....+.-.-..+... - ...|.+..+.++.-++. +..++
T Consensus 1545 n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~ 1624 (2382)
T KOG0890|consen 1545 NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDED 1624 (2382)
T ss_pred cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence 11 01111111000000000 0 00011111111111111 01111
Q ss_pred ----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH
Q 015351 192 ----QQGWLSYIKFELRYNEVERARQIYERFVQC---HPK-----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE 259 (408)
Q Consensus 192 ----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 259 (408)
.+.|......-....+..+-+-.+++++-. +|+ .+.|+..|++....|.++.|...+-.|.+..
T Consensus 1625 s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---- 1700 (2382)
T KOG0890|consen 1625 SANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---- 1700 (2382)
T ss_pred ccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----
Confidence 345555554433333444444445554422 232 5789999999999999999999998888765
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CC----------cch----HHHHHHHHHHHHHcCCchhHHHHHHHH
Q 015351 260 EAEQLFVAFAEFEERCKETERARCIYKFALDHI-PK----------GRA----EDLYRKFVAFEKQYGDREGIEDAIVGK 324 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~----------~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (408)
-+.+....|+++-..|+-..|+.++++.++.+ |+ +.. ......++.+....|+.. ...
T Consensus 1701 -~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~------s~~ 1773 (2382)
T KOG0890|consen 1701 -LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFE------SKD 1773 (2382)
T ss_pred -cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchh------HHH
Confidence 36899999999999999999999999999643 22 111 122333444555556533 334
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH------------HcCCHHH---HHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 015351 325 RRFQYEDEVRKNPMNYDIWFDYIRLEE------------SVGNKER---AREVYERAIANVPPAEEKRYWQRYIYLWINY 389 (408)
Q Consensus 325 A~~~~~~al~~~p~~~~~~~~~~~~~~------------~~g~~~~---A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~ 389 (408)
-...|..+.+..|...+.++.+|..|. +.|++.. ++..|.+++.-...+-. ..-.+.+-+|+++
T Consensus 1774 ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iy-qsmPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1774 ILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLY-QSMPRLLTLWLDI 1852 (2382)
T ss_pred HHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHH-HhhhHHHHHHHhh
Confidence 578999999999977777777775543 3455555 55566677764333221 1123466789987
Q ss_pred HHHh
Q 015351 390 ALYE 393 (408)
Q Consensus 390 a~~~ 393 (408)
+.-.
T Consensus 1853 ~t~~ 1856 (2382)
T KOG0890|consen 1853 GTHI 1856 (2382)
T ss_pred cchh
Confidence 5443
No 253
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.027 Score=55.77 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcC
Q 015351 265 FVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g 312 (408)
.-.+...|...|-+++-+.+++.++.....+ ...+..++-++.+..
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LGLERAH--MgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLGLERAH--MGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhchhHHH--HHHHHHHHHHHHhcC
Confidence 4456677777888888888888887754443 455666666665543
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.73 E-value=8.5e-05 Score=41.55 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYR 123 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (408)
.+|..+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.72 E-value=0.0056 Score=57.67 Aligned_cols=176 Identities=11% Similarity=-0.012 Sum_probs=110.3
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-chHH------HHHHHHHHH----HcCChHHHH
Q 015351 111 RSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR-VDQL------WYKYIHMEE----MLGNVAGAR 179 (408)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~------~~~~~~~~~----~~~~~~~A~ 179 (408)
.-+|.-+++.-|.. ...+..+.--.|+-+.+++.+.++.+...- .+-+ |+....... ...+.+.|.
T Consensus 177 ~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 177 FGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 33566666666644 233444444457788888888877663211 1111 111111111 234567788
Q ss_pred HHHHHHHHhCCCHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015351 180 QIFERWMHWMPDQQGWLS-YIKFELRYNEVERARQIYERFVQCHPK-----VSTWIKYAKFEMKMGEVDRARNVYERAVE 253 (408)
Q Consensus 180 ~~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 253 (408)
.++....+..|+..+|.. -|.++...|+.++|+..|++++..... .-.+..++.++.-+.++++|...|.+..+
T Consensus 254 ~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 254 ELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 888888888888555544 457777788888888888887753321 22356777778888888888888888887
Q ss_pred HcCCcHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhh
Q 015351 254 KLADDEEAEQLFVAFAEFEERCKET-------ERARCIYKFALDH 291 (408)
Q Consensus 254 ~~p~~~~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~~ 291 (408)
...-+ .....+..|-++...++. ++|..+|.++-..
T Consensus 334 ~s~WS--ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 334 ESKWS--KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccccH--HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 66552 233334556677777777 8888888888764
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.72 E-value=9.5e-05 Score=41.34 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 015351 340 YDIWFDYIRLEESVGNKERAREVYERAIANVPPA 373 (408)
Q Consensus 340 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 373 (408)
+.+|..+|.++...|++++|+..|+++++.+|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=9.1e-05 Score=41.44 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 015351 340 YDIWFDYIRLEESVGNKERAREVYERAIANVPPA 373 (408)
Q Consensus 340 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 373 (408)
+.+|+.+|.++...|++++|+..|++|++.+|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=7.9e-05 Score=41.71 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCC
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYR 123 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (408)
+|..+|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 259
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.67 E-value=7.4e-05 Score=67.21 Aligned_cols=100 Identities=12% Similarity=-0.049 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.++.|...|.++|+.+|+++..+-..+..+.+.+++..|+.-+.+|++.+|.....++..|..++..+.+.+|...|+.
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~ 170 (408)
.....|+.+.+-..+..+-.
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHH
Confidence 99999998888777666543
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.012 Score=50.12 Aligned_cols=145 Identities=13% Similarity=0.045 Sum_probs=84.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH---HHHHHHHh
Q 015351 129 LKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLS---YIKFELRY 205 (408)
Q Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~~~~~~~~ 205 (408)
+.-+.-....|++.+|...|..++...|.+..+-..+++++...|+.+.|..++...=.... .+.|.. ...++.+.
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHH
Confidence 34444556778888888888888888888888888888888888888888777765311111 122222 12223222
Q ss_pred hhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q 015351 206 NEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCK 276 (408)
Q Consensus 206 ~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 276 (408)
....+.. .+++.+..+| +.++-+.++..+...|+.+.|.+.+-..++.+-.. .+....-.+..++.-.|
T Consensus 217 a~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 217 AATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFG 286 (304)
T ss_pred hcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcC
Confidence 2222222 2334444555 56677777777777777777777776666664431 12334444444444444
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.0081 Score=47.85 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHH
Q 015351 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIY 215 (408)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~ 215 (408)
+...|-..|++++..... +.. +.....++....+|. .-.-+.++..+...|++++|...+
T Consensus 49 q~~~AS~~Y~~~i~~~~a---------------k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL 112 (207)
T COG2976 49 QAQEASAQYQNAIKAVQA---------------KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQL 112 (207)
T ss_pred HHHHHHHHHHHHHHHHhc---------------CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 445677777777654311 111 233334444444433 233455667777889999999999
Q ss_pred HHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 216 ERFVQCHPKV----STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 216 ~~al~~~p~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
+.++....+. -+-++++.+..+.|.+++|...+...... .-.+.+-...|+++...|+-++|+..|++++..
T Consensus 113 ~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~----~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 113 KQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE----SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc----cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 9988765432 34678899999999999999988764332 112444556799999999999999999999998
Q ss_pred CCCc
Q 015351 292 IPKG 295 (408)
Q Consensus 292 ~p~~ 295 (408)
.+..
T Consensus 189 ~~s~ 192 (207)
T COG2976 189 DASP 192 (207)
T ss_pred cCCh
Confidence 6543
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.0061 Score=47.58 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=57.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCch-----H-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 015351 132 AEVEMKNKFINHARNVWDRAVTLLPRVD-----Q-LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRY 205 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (408)
+......|+...+...+++++.+..... . .|..- .+..++... ..+...++..+...
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~------------~r~~l~~~~-----~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEP------------ERERLRELY-----LDALERLAEALLEA 75 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHH------------HHHHHHHHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHH------------HHHHHHHHH-----HHHHHHHHHHHHhc
Confidence 4445567788899999999998753311 1 12111 111111110 12334455556666
Q ss_pred hhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015351 206 NEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVE 253 (408)
Q Consensus 206 ~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 253 (408)
|+++.|+..+++++..+| +..+|..+..++...|+...|.+.|++...
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 667777777777777766 345666666667777777777666665543
No 263
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.61 E-value=0.0081 Score=50.32 Aligned_cols=194 Identities=13% Similarity=0.135 Sum_probs=107.1
Q ss_pred ChHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------hCCChHHHHHHHHHHHHcCCH
Q 015351 174 NVAGARQIFERWMHWMPD-----QQGWLSYIKFELRYNEVERARQIYERFVQ-------CHPKVSTWIKYAKFEMKMGEV 241 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~a~~~~~~~~~ 241 (408)
.+++|++.|++.+++.|. ..+......+..+.|++++-...|++.+. .+-+.........+.....+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 444455555555554443 22333344445555555554444444433 332333333444444445555
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHH----HHHHHHHHcCChHHHHHHHHHHHhhCCCcc----------hHHHHHHHHHH
Q 015351 242 DRARNVYERAVEKLADDEEAEQLFV----AFAEFEERCKETERARCIYKFALDHIPKGR----------AEDLYRKFVAF 307 (408)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~~~----~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~~ 307 (408)
+--..+|+..++...+ .-+..+|+ .++.++...+++.+-.+++.+.-+.+..++ ..++|..-+++
T Consensus 122 ~LLQ~FYeTTL~ALkd-AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKD-AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred HHHHHHHHHHHHHHHh-hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5566666655544322 11345554 578888888888777777776665543321 24455555666
Q ss_pred HHHcCCchhHHHHHHHHHHHHHHHHHhhCCC--CHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 308 EKQYGDREGIEDAIVGKRRFQYEDEVRKNPM--NYDIWFD----YIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 308 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~----~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
+..+.+. .+-..+|++++..... +|-+.-. -|.++.+.|.+++|-.-|-.|.+....++.+
T Consensus 201 YT~qKnN--------KkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp 267 (440)
T KOG1464|consen 201 YTEQKNN--------KKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP 267 (440)
T ss_pred hhhhccc--------HHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc
Confidence 6655552 2356778998876533 3332222 2345677899999999999999876555543
No 264
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.58 E-value=0.00019 Score=64.68 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=93.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAG 177 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 177 (408)
+.-.+.-++++.|+..|.++++++|+++..+-..+..+.+.+++..|+.-+.+|++.+|.....|+.-|..+...+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHH
Q 015351 178 ARQIFERWMHWMPD-QQGWLSYIKF 201 (408)
Q Consensus 178 A~~~~~~al~~~p~-~~~~~~~~~~ 201 (408)
|...|++.....|+ +.+-..+..+
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 99999999999999 6555554443
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.55 E-value=0.0019 Score=60.83 Aligned_cols=114 Identities=13% Similarity=0.189 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhhhHHHHHHH
Q 015351 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-----QQGWLSYIKFELRYNEVERARQI 214 (408)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~ 214 (408)
+.+.|.++++...+..|++.-.....|+++...|+.++|++.|++++..... .-.+..++-++.-++++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 4555555555555555655555555555555566666666666555532221 22344455555666667777777
Q ss_pred HHHHHHhCCChHH--HHHHHHHHHHcCCH-------HHHHHHHHHHHH
Q 015351 215 YERFVQCHPKVST--WIKYAKFEMKMGEV-------DRARNVYERAVE 253 (408)
Q Consensus 215 ~~~al~~~p~~~~--~~~~a~~~~~~~~~-------~~A~~~~~~al~ 253 (408)
|.+..+.+.-... .+..|.++...|+. ++|.+.|.++-.
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7776665543333 23335555666666 666666665543
No 266
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.54 E-value=9.9e-05 Score=63.43 Aligned_cols=123 Identities=22% Similarity=0.146 Sum_probs=95.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAG 177 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 177 (408)
+.-.+..|.++.|+..|.+++.++|....++...+.++.+.++...|+.-+..++.++|++..-+...+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33445678999999999999999999999999999999999999999999999999999998888888888899999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 178 ARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
|...+..+.+++-+..+-..+-.+.-..+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 9999999998776532222222333333344444444444433
No 267
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.52 E-value=0.036 Score=46.55 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCChH----HHHHHHHHHHHccCHHHHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTG----VWIKYAKWEESQKDFNRARSVWERAL 118 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al 118 (408)
+.|++-|+++++..|...+ ++..+..+.+..|++++-...|.+.+
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4466666666666655432 44455566666666666666666555
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.51 E-value=0.02 Score=51.89 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC--HHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhCC------ChHHHHHHH
Q 015351 162 WYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQGWLSYI-KFELRYNEVERARQIYERFVQCHP------KVSTWIKYA 232 (408)
Q Consensus 162 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~a 232 (408)
...++....+.|.+..|.+..+-.+.++|. +-.....+ .+..+.++++--+.+++....... -+..-+..+
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA 185 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence 344556666777777777777777777776 22222222 233445666666666665443110 112333334
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHHHcCC
Q 015351 233 KFEMKMGEV---------------DRARNVYERAVEKLAD 257 (408)
Q Consensus 233 ~~~~~~~~~---------------~~A~~~~~~al~~~p~ 257 (408)
..+...++. +.|...+.+|+..+|.
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 444444444 6777777777777554
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.037 Score=52.59 Aligned_cols=181 Identities=14% Similarity=0.080 Sum_probs=120.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHH----------HHHHHHHhccCHHHHHHHHHHH
Q 015351 82 DLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWL----------KYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 82 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------~~a~~~~~~~~~~~A~~~~~~a 151 (408)
+.++.+| ++.+|..+|......-+++.|...|-++-... ...+-- ..+.+..--|.+++|.+.|-.+
T Consensus 684 qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~--Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 684 QFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA--GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred HHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc--chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 3445555 56899999999888888888888887764211 111222 2233334457888888888554
Q ss_pred HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHH
Q 015351 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228 (408)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 228 (408)
-+.+ .-+.++...|++-...++++..-.-..+ .++|...|........+++|.++|...-..
T Consensus 761 drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------- 825 (1189)
T KOG2041|consen 761 DRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------- 825 (1189)
T ss_pred chhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------
Confidence 3322 2245566677777776666653322222 778999999888888999999999876433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015351 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKF 287 (408)
Q Consensus 229 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 287 (408)
-.++.++.....+++- +......|+ +..+.-.+++++.+.|--++|.+.|-+
T Consensus 826 e~~~ecly~le~f~~L----E~la~~Lpe---~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGEL----EVLARTLPE---DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HhHHHHHHHHHhhhhH----HHHHHhcCc---ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 3455666665665543 344445677 678888899999999999988888765
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.027 Score=45.01 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=95.2
Q ss_pred cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHcCChHHHHHH
Q 015351 105 KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ---LWYKYIHMEEMLGNVAGARQI 181 (408)
Q Consensus 105 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~A~~~ 181 (408)
+....|-..|+++++.- ..+.. +.....++....+|.+.. .-+.++..+...|++++|...
T Consensus 48 ~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aq 111 (207)
T COG2976 48 EQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQ 111 (207)
T ss_pred HHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 34446777788776421 11222 444455555566655432 345667778888999999999
Q ss_pred HHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 182 FERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 182 ~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
++.++....+ .-+-..++.+...+|.++.|++.+.......=.+......|.++...|+.++|+..|+++++..++
T Consensus 112 L~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 112 LKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9988866554 445667788899999999999888775443212334556789999999999999999999998765
No 271
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.44 E-value=0.015 Score=52.70 Aligned_cols=141 Identities=15% Similarity=0.115 Sum_probs=103.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---------c-----cC------------CCh---HHHHHHH
Q 015351 82 DLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE---------V-----DY------------RNH---TLWLKYA 132 (408)
Q Consensus 82 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------~-----~p------------~~~---~~~~~~a 132 (408)
..+..+|.++++++.++.++..+|+.+.|..+.++|+- . ++ .|- .+.+.++
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 44678999999999999999999999999999999871 1 11 122 3445667
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCC-chHHHHHHHHH-HHHcCChHHHHHHHHHHHH--------hCCCHHHHHHHHHHH
Q 015351 133 EVEMKNKFINHARNVWDRAVTLLPR-VDQLWYKYIHM-EEMLGNVAGARQIFERWMH--------WMPDQQGWLSYIKFE 202 (408)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~~~~~ 202 (408)
....+.|-+..|.+..+-.+.++|. ++-.-...++. ..+.++++--+.+++.... .-| ..-+..+..+
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP--n~a~S~aLA~ 188 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP--NFAFSIALAY 188 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc--cHHHHHHHHH
Confidence 7888899999999999999999998 66544444444 4566777777777766544 123 3344444555
Q ss_pred HHhhhH---------------HHHHHHHHHHHHhCCC
Q 015351 203 LRYNEV---------------ERARQIYERFVQCHPK 224 (408)
Q Consensus 203 ~~~~~~---------------~~A~~~~~~al~~~p~ 224 (408)
...++. +.|...+.+|+...|.
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 555555 8999999999999875
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.055 Score=44.85 Aligned_cols=188 Identities=12% Similarity=0.070 Sum_probs=96.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----CCh-HHHHHHHHH
Q 015351 168 MEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNEVERARQIYERFVQCH-----PKV-STWIKYAKF 234 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~a~~ 234 (408)
.+...+++++|..++.++.+...+ ...+...+.+......+.++..+|+++.... |+. ..-+..+.-
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 344444555555555555433222 2222233333444445555666666655432 211 112222333
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh----hCCCcchHHHHHHHHHH
Q 015351 235 EMKMGEVDRARNVYERAVEKLADD---EEAEQLFVAFAEFEERCKETERARCIYKFALD----HIPKGRAEDLYRKFVAF 307 (408)
Q Consensus 235 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~ 307 (408)
..+..++++|+.+|++++.....+ ....+++...+.++.+...+.+|-..+.+-.. ....++....+...+-+
T Consensus 120 ~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv 199 (308)
T KOG1585|consen 120 ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILV 199 (308)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHH
Confidence 455677888888888887765432 22355566667777777777777666655432 12222223334443444
Q ss_pred HHHcCCchhHHHHHHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015351 308 EKQYGDREGIEDAIVGKRRFQYEDEVRK----NPMNYDIWFDYIRLEESVGNKERAREVYE 364 (408)
Q Consensus 308 ~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 364 (408)
+....+ +..|...|...-+. .|++..+.-++...| ..|+.+++..++.
T Consensus 200 ~L~~~D--------yv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 200 YLYAHD--------YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HhhHHH--------HHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 443344 44566667666553 244555666666655 3577777666544
No 273
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.35 E-value=0.0074 Score=45.52 Aligned_cols=105 Identities=22% Similarity=0.430 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcC---CChHHHHHHHHHHHHc----cCHHHHHHHHHHHHhccCCC---------hHHHHHHHHHHHhcc
Q 015351 76 KRKEFEDLIRRVR---WNTGVWIKYAKWEESQ----KDFNRARSVWERALEVDYRN---------HTLWLKYAEVEMKNK 139 (408)
Q Consensus 76 A~~~~~~~l~~~p---~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~ 139 (408)
.+..|+..|.... +-...|..+..+.... |.-..-..++++++....++ ..+|+.++.+..
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--- 80 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--- 80 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---
Confidence 5566777776544 4467888888887654 44556677888887654433 356666555322
Q ss_pred CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 140 FINHARNVWDRAVTL--LPRVDQLWYKYIHMEEMLGNVAGARQIFERWM 186 (408)
Q Consensus 140 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 186 (408)
.+..+|..+... .-.....|..+|.++...|++.+|.++|++++
T Consensus 81 ---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 666777766654 34556777777777777788888877777664
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.27 E-value=0.11 Score=45.42 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=74.9
Q ss_pred HcCChHHHHHHHHHHHHhC----CC-----HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhC----C------C-----h
Q 015351 171 MLGNVAGARQIFERWMHWM----PD-----QQGWLSYIKFELRYN-EVERARQIYERFVQCH----P------K-----V 225 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~----p~-----~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~----p------~-----~ 225 (408)
..|+.+.|..++.|+-... |+ .++.+..|.-....+ +++.|...++++.+.. + + .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4455555555555553322 22 334445555555556 7777777777776652 1 1 1
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 015351 226 STWIKYAKFEMKMGEV---DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP 293 (408)
Q Consensus 226 ~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 293 (408)
.+...++..+...+.+ ++|..+++.+-...|+ .+.++....+++.+.++.+.+.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3456677777776654 4566666666666676 567776666666668889999999999988655
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.25 E-value=0.00071 Score=37.70 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYR 123 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (408)
.+|..+|.++...|++++|...|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666663
No 276
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.2 Score=45.83 Aligned_cols=181 Identities=12% Similarity=0.081 Sum_probs=109.1
Q ss_pred HHHHHhccCHHHHHHHHHHHHHh---CCC-------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH----HHH
Q 015351 132 AEVEMKNKFINHARNVWDRAVTL---LPR-------VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----WLS 197 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~ 197 (408)
+-+..-.|++.+|++-...+... .|. .+.+.+.+|......|.++.|...|..|.+.....++ -.+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 34455566777766666555543 233 2345666677777777788888777777776555333 345
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH---HHHHHHH
Q 015351 198 YIKFELRYNEVERARQIYERFVQCH--PK------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE---EAEQLFV 266 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~--p~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~ 266 (408)
++..|.+.|+.+.--++++..-..+ +. ..+++.+|-+.+.++++.+|...+.+.++.....+ -..-...
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 5667777766555444444432221 11 23456667777788888888888888877653311 1244556
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh---CCCcchHHHHHH--HHHHHHHcCC
Q 015351 267 AFAEFEERCKETERARCIYKFALDH---IPKGRAEDLYRK--FVAFEKQYGD 313 (408)
Q Consensus 267 ~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~--~~~~~~~~g~ 313 (408)
.++.+....|+..++++...-+++. .|+- .+.+|.. +-.++...|+
T Consensus 490 LLs~v~lslgn~~es~nmvrpamqlAkKi~Di-~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI-PVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHHHHhcCCCc-hHHHHHHHHHHHHHHHhCc
Confidence 6777788888888888887777753 3443 3455543 3344555554
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.12 E-value=0.00092 Score=37.24 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
.+|+.+|.++...|++++|...|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57999999999999999999999999999884
No 278
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.023 Score=46.95 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 226 STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
+++++++.++...|++-++++.....+...|+ +..+++..|......-+.++|..-|.+++..+|.-
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~---nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG---NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 56777888888888888888888888888777 77888888887777778888888888888877764
No 279
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.04 E-value=0.002 Score=54.79 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=60.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 166 (408)
|.-....|+.++|..+|+.|+...|.++++...+|.+....+++-+|-++|-+|+.+.|.+.++.....
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 333456799999999999999999999999999999999999999999999999999999888765543
No 280
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.03 E-value=0.4 Score=47.39 Aligned_cols=300 Identities=15% Similarity=0.103 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-----chHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH-TLWLKYAEVEMKNKFINHARNVWDRAVTLLPR-----VDQLWYK 164 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~ 164 (408)
.+....-+.++...|.+.+|+...-+| .+|.-. .+....+.-....++.. .+..++..-|. +|.+-..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence 556666777777777777777654433 122211 11112222222333332 34444444453 4566667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC---------HHHHHH-HHHHHHHhhhHHHHHHHHHHHHHhCCC------hHHH
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMPD---------QQGWLS-YIKFELRYNEVERARQIYERFVQCHPK------VSTW 228 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~ 228 (408)
.+-......++.+|..+..++...-|. .--|.. .+.+....|+++.|.++.+.++..-|. ..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 777778889999999888887664332 112332 346667789999999999999998763 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCC-cHHHHHHHHHH--HHHHHHcCChHHHH--HHHHHH----HhhCCCcchHH
Q 015351 229 IKYAKFEMKMGEVDRARNVYERAVEKLAD-DEEAEQLFVAF--AEFEERCKETERAR--CIYKFA----LDHIPKGRAED 299 (408)
Q Consensus 229 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~--~~~~~~~~~~~~A~--~~~~~a----l~~~p~~~~~~ 299 (408)
...+.+..-.|++++|..+..++.+.... +.....+|..+ +.++..+|+...|. ..|... +...|.+. .
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~--f 578 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE--F 578 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch--h
Confidence 77788888899999999999988776322 11134445444 66777888433332 222222 12223321 1
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 300 LYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWF---DYIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
.....+.+....-..+.. ..+++..++-.....|.....+. .++.++...|+.++|...+.+...........
T Consensus 579 ~~~~r~~ll~~~~r~~~~----~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLA----EAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred HHHHHHHHHHHHHHHhhh----hHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 222222222111111110 22355555555555565444433 57888999999999999999887754444222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCChhHHhh
Q 015351 377 RYWQRYIYLWINYALYEELDAGDMERTRD 405 (408)
Q Consensus 377 ~~w~~~~~l~~~~a~~~e~~~g~~~~A~~ 405 (408)
..|...+.. +....+ ...||...|..
T Consensus 655 ~~~~a~~~~-v~~~lw--l~qg~~~~a~~ 680 (894)
T COG2909 655 VDYLAAAYK-VKLILW--LAQGDKELAAE 680 (894)
T ss_pred chHHHHHHH-hhHHHh--cccCCHHHHHH
Confidence 355443322 111112 25677766654
No 281
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.03 E-value=0.4 Score=47.27 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhcCC----ChHHHHHHHHHHH-HccCHHHHHHHHHHHHhccC--CCh----HHHHHHHHHHHhccCH
Q 015351 73 RLRKRKEFEDLIRRVRW----NTGVWIKYAKWEE-SQKDFNRARSVWERALEVDY--RNH----TLWLKYAEVEMKNKFI 141 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~~a~~~~~~~~~ 141 (408)
...|+.+++-+++..+- ...+.+.+|.++. ...+++.|+..+++++.... +.. ..-..++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34567777766643222 2235666677666 45677777777777765442 222 1223445555555555
Q ss_pred HHHHHHHHHHHHhCCC-chHHHHHHH-----HHHHHcCChHHHHHHHHHHHHhCC--C---HHHHHHH--HHHHHHhhhH
Q 015351 142 NHARNVWDRAVTLLPR-VDQLWYKYI-----HMEEMLGNVAGARQIFERWMHWMP--D---QQGWLSY--IKFELRYNEV 208 (408)
Q Consensus 142 ~~A~~~~~~al~~~p~-~~~~~~~~~-----~~~~~~~~~~~A~~~~~~al~~~p--~---~~~~~~~--~~~~~~~~~~ 208 (408)
. |....+++++...+ ....|...- .+....+++..|.+.++.+..... . ..+...+ +.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 77777776665433 111222221 122223566667777766665432 1 2222222 2333344545
Q ss_pred HHHHHHHHHH
Q 015351 209 ERARQIYERF 218 (408)
Q Consensus 209 ~~A~~~~~~a 218 (408)
+.+++..+++
T Consensus 196 ~d~~~~l~~~ 205 (608)
T PF10345_consen 196 DDVLELLQRA 205 (608)
T ss_pred hhHHHHHHHH
Confidence 5555555555
No 282
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.00 E-value=0.015 Score=40.76 Aligned_cols=64 Identities=8% Similarity=-0.094 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHhccC
Q 015351 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN--HTLWLKYAEVEMKNKF 140 (408)
Q Consensus 77 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~ 140 (408)
...+++.+..+|++..+.+.+|..+...|+++.|...+-.++..+|.. ..+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445666777777777777777777777777777777777777766654 3444444444444444
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.98 E-value=0.44 Score=46.97 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015351 339 NYDIWFDYIRLEESVGNKERAREVYE 364 (408)
Q Consensus 339 ~~~~~~~~~~~~~~~g~~~~A~~~~~ 364 (408)
.+.+++..|.++...|+.+.|...|.
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46678889999999999999999998
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.069 Score=50.89 Aligned_cols=189 Identities=19% Similarity=0.150 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH----------HHHHHhhhHHH
Q 015351 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYI----------KFELRYNEVER 210 (408)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~----------~~~~~~~~~~~ 210 (408)
.++|++. ++.+|. +.+|..++......-.++.|...|-++-. .|.......+. .+-.-.|.+++
T Consensus 679 ledA~qf----iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQF----IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred hHHHHHH----HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 4555443 445676 89999999988888888888888776532 22222222332 22233477888
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 015351 211 ARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
|.+.|-.+-..+- ...+..+.|++-...++++..-. +.++.....+|.++|..+.....++.|.++|.+.-.
T Consensus 753 aek~yld~drrDL-------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 753 AEKLYLDADRRDL-------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhhccchhhh-------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8887766544422 22334455666555555543211 122333567788888888888888888888886432
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 291 HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYER 365 (408)
Q Consensus 291 ~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 365 (408)
. ..++.++......++ ++.....-|++..+.-.++.++...|.-++|.+.|-|
T Consensus 825 ~----------e~~~ecly~le~f~~------------LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 T----------ENQIECLYRLELFGE------------LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred h----------HhHHHHHHHHHhhhh------------HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1 112222222121111 4445555677777888888888888888888777755
No 285
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.93 E-value=0.0011 Score=57.22 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=94.2
Q ss_pred HhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHH
Q 015351 136 MKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQI 214 (408)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~ 214 (408)
...|.++.|++.|.+++.++|.+..++...+.+++..+....|+.-+..++.++|+ ..-+..-+.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999 55555556666678999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 215 YERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 215 ~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
+..+.+++-+...--.+-.+.-..+...+-...+++..+.
T Consensus 205 l~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 205 LALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 9999998765544333444554555555555556655543
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.93 E-value=0.002 Score=35.50 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCC
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN 124 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (408)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 44556666666666666666666666666653
No 287
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.90 E-value=0.018 Score=40.43 Aligned_cols=74 Identities=15% Similarity=0.059 Sum_probs=49.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCChHHHHHHHHH
Q 015351 111 RSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV--DQLWYKYIHMEEMLGNVAGARQIFER 184 (408)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~ 184 (408)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+..+....|.-+....-|++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 456777788888888888888888888888888888888888887654 45566666666666655444444443
No 288
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.98 Score=49.62 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 337 PMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 337 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
..-++.|+.++++....|.++.|...+-.|.+..+. + +.+..|.+. .+.|+-..|..+++
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~---------i~~E~AK~l-W~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP--E---------IVLERAKLL-WQTGDELNALSVLQ 1726 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--h---------HHHHHHHHH-HhhccHHHHHHHHH
Confidence 345789999999999999999999998888876532 2 567788888 48899999987653
No 289
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.88 E-value=0.038 Score=41.65 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015351 210 RARQIYERFVQCHP---KVSTWIKYAKFEMKMGEVDRARNVYERAV 252 (408)
Q Consensus 210 ~A~~~~~~al~~~p---~~~~~~~~a~~~~~~~~~~~A~~~~~~al 252 (408)
.+..+|+.+....- .+..|..+|.++...|++.+|.++|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 45555555555432 24456666666666666666666666543
No 290
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.19 Score=46.94 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHh------------cCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRR------------VRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118 (408)
Q Consensus 73 ~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 118 (408)
+++|...|.-++.. .|.+++.++.++.+...+|+.+.|..+.+++|
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 46788888877654 36677778888888888888877777777766
No 291
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.23 Score=46.50 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=108.3
Q ss_pred cCHHHHHHHHHHHHhc------------cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CC-----------
Q 015351 105 KDFNRARSVWERALEV------------DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-----LP----------- 156 (408)
Q Consensus 105 g~~~~A~~~~~~al~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p----------- 156 (408)
..|++|...|.-++.. +|.+++..+.++.+...+|+.+.|..+.++++=. .|
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4678888888887743 4667789999999999999988888877777632 11
Q ss_pred -----CchH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--HHHHHHHHH-HHHHhhhHHHHHHHHHHHH-----H
Q 015351 157 -----RVDQ---LWYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQGWLSYIK-FELRYNEVERARQIYERFV-----Q 220 (408)
Q Consensus 157 -----~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~-~~~~~~~~~~A~~~~~~al-----~ 220 (408)
.+-. +.+.+...+.+.|.+..|.+..+-.++++|. +-....++. +..+..+|.-.+.+++..- .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 1222 2334455667789999999999999999988 433444443 4445677887787777663 3
Q ss_pred hCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcCC
Q 015351 221 CHPKVSTWIKYAKFEMKMGE---VDRARNVYERAVEKLAD 257 (408)
Q Consensus 221 ~~p~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~ 257 (408)
..|+-..-..+|.++..... ...|...+.+|+..+|.
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 34665666777777766554 57788888999888774
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.79 E-value=0.12 Score=40.14 Aligned_cols=84 Identities=12% Similarity=-0.079 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM 171 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 171 (408)
..++.....-...++.+.+..++.-+--..|+.+.+-..-|.++...|++.+|+.+|+.+....|..+..--.++.++..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34455555666677778888888777777888888777778888888888888888888777777666555555555555
Q ss_pred cCCh
Q 015351 172 LGNV 175 (408)
Q Consensus 172 ~~~~ 175 (408)
.|+.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 5543
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.78 E-value=0.58 Score=45.43 Aligned_cols=282 Identities=14% Similarity=0.024 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHhcc----
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEES-----QKDFNRARSVWERALEV-----DYRNHTLWLKYAEVEMKNK---- 139 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~---- 139 (408)
..|...|+.+-+. .+......+|.++.. ..|.+.|+..|+.+.+. .-..+.+...+|.+|....
T Consensus 229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 3477777776554 355566666666654 36899999999999761 1124556788888888853
Q ss_pred -CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hhhHHHH
Q 015351 140 -FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG---NVAGARQIFERWMHWMPDQQGWLSYIKFELR----YNEVERA 211 (408)
Q Consensus 140 -~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A 211 (408)
+...|..+|.++..... +...+.+|.++.... +...|...|..|.+... ..+.+.++.++.. ..+...|
T Consensus 307 ~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHH
Confidence 67889999999988743 556777787776654 56789999999876533 5555666665553 2467899
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHHH----cCChHHHHHHH
Q 015351 212 RQIYERFVQCHPKVSTWIKYAKFE-MKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE-FEER----CKETERARCIY 285 (408)
Q Consensus 212 ~~~~~~al~~~p~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~----~~~~~~A~~~~ 285 (408)
..+|+++-+.. .+.+...++.++ ...+.++.+.-.+.......-........++..-. .... ..+...+...+
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLY 462 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHH
Confidence 99999999887 344333344333 23377776666665554443221111111111111 1111 22556666777
Q ss_pred HHHHhhCCCcchHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C--CHHHHHH
Q 015351 286 KFALDHIPKGRAEDLYRKFVAFEKQY-GDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESV-G--NKERARE 361 (408)
Q Consensus 286 ~~al~~~p~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g--~~~~A~~ 361 (408)
.++...-. ......+++++..- |.... ...|...|.++.... ....+++|.++..- | ....|.+
T Consensus 463 ~~a~~~g~----~~a~~~lgd~y~~g~g~~~d-----~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 463 SRAAAQGN----ADAILKLGDYYYYGLGTGRD-----PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred HHHHhccC----HHHHhhhcceeeecCCCCCC-----hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 66654322 23444444444322 21111 567899999998876 78888999887541 1 2688999
Q ss_pred HHHHHHhcCCCc
Q 015351 362 VYERAIANVPPA 373 (408)
Q Consensus 362 ~~~~al~~~p~~ 373 (408)
+|.++.+.....
T Consensus 531 ~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 531 YYDQASEEDSRA 542 (552)
T ss_pred HHHHHHhcCchh
Confidence 999988766554
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.78 E-value=0.003 Score=35.70 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=16.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 015351 94 WIKYAKWEESQKDFNRARSVWERAL 118 (408)
Q Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al 118 (408)
|..+|.++...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666777777777777777777744
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.75 E-value=0.0029 Score=34.82 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERAIANVPPA 373 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 373 (408)
++++.+|.++...|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467889999999999999999999999999974
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.75 E-value=0.35 Score=42.39 Aligned_cols=240 Identities=13% Similarity=0.065 Sum_probs=113.4
Q ss_pred HHccCHHHHHHHHHHHHhcc-CCCh-------HHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 015351 102 ESQKDFNRARSVWERALEVD-YRNH-------TLWLKYAEVEMKNK-FINHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 172 (408)
..+|+.+.|..++.|+-... ..++ .+.+..|......+ +++.|...++++........
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~------------- 70 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG------------- 70 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-------------
Confidence 45677777777777775433 2232 33344444444455 56666666666655421100
Q ss_pred CChHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHH
Q 015351 173 GNVAGARQIFERWMHWMPD-----QQGWLSYIKFELRYNE---VERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 173 ~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~ 243 (408)
+..+..|+ ..+...++..+...+. .++|..+.+.+-...|+ +.++.....+....++.+.
T Consensus 71 -----------~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 71 -----------KMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred -----------hccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhH
Confidence 00001111 2234445555555444 33455566666555565 4455455555555777888
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCcc-hHHH-HHHHHHHHHHcCCchhHHH
Q 015351 244 ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH--IPKGR-AEDL-YRKFVAFEKQYGDREGIED 319 (408)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~-~~~~-~~~~~~~~~~~g~~~~~~~ 319 (408)
+.+.+.+++...+....+..........+... ....|...+...+.. .|..+ .... ......+....++....
T Consensus 140 ~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~-- 216 (278)
T PF08631_consen 140 YEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSS-- 216 (278)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccch--
Confidence 88888888877653222333333333333333 334555555555532 23321 1111 11111111111111111
Q ss_pred HHHHHHHHHHHHHHh--hCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015351 320 AIVGKRRFQYEDEVR--KNPMNYD-------IWFDYIRLEESVGNKERAREVYERAIA 368 (408)
Q Consensus 320 ~~~~~A~~~~~~al~--~~p~~~~-------~~~~~~~~~~~~g~~~~A~~~~~~al~ 368 (408)
..++.....++.... ..|-+.. +..+.|.-..+.++|+.|...|+-++.
T Consensus 217 ~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 217 EKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 001222233332221 1222222 233456666788999999999998774
No 297
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.72 E-value=0.047 Score=40.77 Aligned_cols=114 Identities=19% Similarity=0.374 Sum_probs=68.7
Q ss_pred HHHHHHHHH-hhCCCcchHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcC
Q 015351 281 ARCIYKFAL-DHIPKGRAEDLYRKFVAFEKQY---GDREGIEDAIVGKRRFQYEDEV--RKNPMNYDIWFDYIRLEESVG 354 (408)
Q Consensus 281 A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~g 354 (408)
-+..|+..+ .....+++...|..++...... |........+++++...|...- ..||....+|+.+++.. +
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~ 80 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---D 80 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C
Confidence 345666666 4445555678888888876532 2222111112444444443322 13455567899888763 3
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 355 NKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 355 ~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
...++|....+..-.. ....++..||.++| ..|++.+|.+||+
T Consensus 81 ---dp~~if~~L~~~~IG~-------~~AlfYe~~A~~lE-~~g~~~~A~~iy~ 123 (125)
T smart00777 81 ---EPRELFQFLYSKGIGT-------KLALFYEEWAQLLE-AAGRYKKADEVYQ 123 (125)
T ss_pred ---CHHHHHHHHHHCCcch-------hhHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 3566777766542221 13347888999998 8999999999985
No 298
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.70 E-value=0.0039 Score=34.17 Aligned_cols=29 Identities=55% Similarity=0.867 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 015351 106 DFNRARSVWERALEVDYRNHTLWLKYAEV 134 (408)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 134 (408)
+++.|+.+|++++...|.++.+|..++.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34444444444444444444444444443
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.64 E-value=0.0035 Score=35.41 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 342 IWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 342 ~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
+|..+|.++.+.|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999996643
No 300
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.54 E-value=0.004 Score=53.02 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAE 133 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 133 (408)
|..++|.++|+.++...|.++.++..+|.+....+++-+|-.+|-+|+...|.+.++....+.
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 456789999999999999999999999999999999999999999999999999988776654
No 301
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.036 Score=48.02 Aligned_cols=96 Identities=11% Similarity=0.024 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCc--chHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 015351 265 FVAFAEFEERCKETERARCIYKFALDHIPKG--RAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI 342 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 342 (408)
+-.-|..+++.++|..|+..|.++|+....+ -...+|.+.+.+....|+ +..|+.-..+++..+|.+..+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--------yRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--------YRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHhcCcchhhh
Confidence 3344555566666666666666666532221 123455555555555555 334566666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015351 343 WFDYIRLEESVGNKERAREVYERAIA 368 (408)
Q Consensus 343 ~~~~~~~~~~~g~~~~A~~~~~~al~ 368 (408)
++.-+.++.....+..|....+..+.
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 66666666555555555555554443
No 302
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.43 E-value=0.0072 Score=33.04 Aligned_cols=31 Identities=52% Similarity=1.034 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHh
Q 015351 354 GNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYE 393 (408)
Q Consensus 354 g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~ 393 (408)
|+.+.|+.+|++++..+|.++. +|..|+.++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~---------~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE---------LWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH---------HHHHHHHHH
Confidence 5788999999999999997775 777787765
No 303
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.048 Score=47.24 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC----hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRN----HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 166 (408)
...+..-|+-|++..+|..|+..|.++|+..-.+ .-+|...+.+....|++..|+.-..+++..+|++..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3456667888888889999999999998654333 356677777888888899999888999999998888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 167 HMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
.++.....+..|....+..++.+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8888888888888777777665443
No 304
>PRK10941 hypothetical protein; Provisional
Probab=96.41 E-value=0.056 Score=46.58 Aligned_cols=68 Identities=12% Similarity=-0.111 Sum_probs=45.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHH
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWY 163 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (408)
.+-..+.+.++++.|..+.++++...|+++.-|...|.++.+.|.+..|..-++..++.+|+.+.+-.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34445566677777777777777777777777777777777777777777777777777776665433
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.39 E-value=0.13 Score=41.41 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD---DEEAEQL 264 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 264 (408)
...+..+|.++.+.|+.+.|++.|.++...+.+ .++++.+..+....+++..+...+.++-..... ......+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 456778888888889999999999888877653 356778888888888888888888877655332 1111223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 015351 265 FVAFAEFEERCKETERARCIYKFALDHIP 293 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p 293 (408)
-..-|...+..++|..|-..|-.+.....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 34446666778899999988887765443
No 306
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.34 E-value=0.16 Score=42.37 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=71.0
Q ss_pred cCChHHHHHHHHHHHhh-----CCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC------CHHHH
Q 015351 275 CKETERARCIYKFALDH-----IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM------NYDIW 343 (408)
Q Consensus 275 ~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~ 343 (408)
...+++|+..|.-|+-. .+......++..++.++...|+.+. +...+.+|...|+++++.... ...+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~-E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEEN-EKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34566777766666531 1223346778888888888887443 333378899999999986532 24577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 015351 344 FDYIRLEESVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 344 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
+.+|.+..+.|++++|...|.+++..-..+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 8899999999999999999999998644433
No 307
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.21 E-value=0.071 Score=38.48 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=62.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCh
Q 015351 97 YAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNV 175 (408)
Q Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~ 175 (408)
.|.-+...|+.-+|+++.+..+..++++...|. +...+|.+ .++.+-.. +|+ ...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~----lh~~QG~i-----f~~lA~~ten~d-~k~~yL----------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWL----LHRLQGTI-----FYKLAKKTENPD-VKFRYL----------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHH----HHHHHhHH-----HHHHHHhccCch-HHHHHH-----------
Confidence 355677889999999999999988888876662 22333321 12222222 333 222111
Q ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 015351 176 AGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQC 221 (408)
Q Consensus 176 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 221 (408)
-.+.++|.++..+.|. ....+.++.-+-....|+++..-.++++..
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 2366777778777777 556666665555555667777777776654
No 308
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.19 E-value=0.8 Score=43.69 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERA 366 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~a 366 (408)
++++.+|.++....++++|.+.|.+|
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 34555555555555555555555443
No 309
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.13 E-value=0.0085 Score=48.91 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=49.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch
Q 015351 99 KWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD 159 (408)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (408)
......++.+.|.+.|.+++..-|....-|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3445678888888888888888888888888888888888888888888888888888653
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.10 E-value=0.036 Score=51.68 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=78.5
Q ss_pred HhhhHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH
Q 015351 204 RYNEVERARQIYERFVQCHPK--VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERA 281 (408)
Q Consensus 204 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 281 (408)
..|+...|++++.+++...|. .....+++.++...|-...|-.++.+++..... .+-.++.+|.++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---epl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---EPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---CchHHHhcchhHHHHhhhHHH
Confidence 458889999999999988883 334788999999999999999999999998865 688899999999999999999
Q ss_pred HHHHHHHHhhCCCc
Q 015351 282 RCIYKFALDHIPKG 295 (408)
Q Consensus 282 ~~~~~~al~~~p~~ 295 (408)
++.|++|++..|++
T Consensus 696 ~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 696 LEAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999998886
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.06 E-value=0.16 Score=40.98 Aligned_cols=96 Identities=8% Similarity=0.089 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---h----HHH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPK---V----STW 228 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~----~~~ 228 (408)
.++..+|..|.+.|+.+.|.+.|.++...... .++++.++.+....+++..+.....++-..... . .+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34556666666666666666666666655433 555666666666666666666666665544321 1 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 015351 229 IKYAKFEMKMGEVDRARNVYERAVEKL 255 (408)
Q Consensus 229 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 255 (408)
..-|..+...++|..|-+.|-.+...+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 333444566778888888777665443
No 312
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.01 E-value=0.016 Score=31.13 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCC
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYR 123 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (408)
.|..+|.++...|+++.|...|+++++.+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555555555566666666666665555543
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=1.8 Score=42.37 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHH
Q 015351 71 DYRLRKRKEFEDLIRRVRW--NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFIN 142 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~ 142 (408)
+.+++|...-+.....-|. -...|..|...+...|++++|-...-+.+. ++...|..........++..
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhccccccc
Confidence 4445555554443333332 335788888999999999998887776654 56667777766666666544
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.97 E-value=0.52 Score=36.15 Aligned_cols=107 Identities=8% Similarity=-0.044 Sum_probs=70.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN 174 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 174 (408)
......-...++++.+..++..+--+.|+.+.+-..-|.++...|++.+|+.+|+......+..+..--.++.++...|+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33334444477888888888887778888888888888888888888888888888877776655444444555544444
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015351 175 VAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFV 219 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al 219 (408)
. .|..++.-....+...+++.+.+...
T Consensus 94 p------------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 94 A------------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred h------------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 3 35555544444455555555554444
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.97 E-value=0.015 Score=31.26 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
.+|..+|.++...|+++.|...|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57889999999999999999999999998775
No 316
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.96 E-value=1 Score=39.40 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=60.9
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIF 182 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 182 (408)
+..+..+-++.-..+++++|.+..++..++.- ..--+.+|..+|++|++..... +.-.+-....|...+|
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~----yr~sqq~qh~~~~~da---- 265 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETI----YRQSQQCQHQSPQHEA---- 265 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHH----HhhHHHHhhhccchhh----
Confidence 33455566666677778888888777777653 2334677778888877653211 1111111111111111
Q ss_pred HHHHHhCCC--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 015351 183 ERWMHWMPD--QQGWLSYIKFELRYNEVERARQIYERFVQCHP 223 (408)
Q Consensus 183 ~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 223 (408)
..+.+.+ .-+-..++.+..++|+..+|++.++...+..|
T Consensus 266 --~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 --QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred --hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1222233 22334566777778888888888887777766
No 317
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=95.95 E-value=0.015 Score=31.24 Aligned_cols=25 Identities=36% Similarity=0.810 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH
Q 015351 176 AGARQIFERWMHWMPDQQGWLSYIK 200 (408)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~ 200 (408)
+.|+.+|++.+..+|+...|+.++.
T Consensus 4 dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 4 DRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3344444444444444444444443
No 318
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.81 E-value=2 Score=41.73 Aligned_cols=245 Identities=11% Similarity=0.081 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHH-------hcCCChHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc
Q 015351 72 YRLRKRKEFEDLIR-------RVRWNTGVWIKYAKWEESQK-----DFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK 139 (408)
Q Consensus 72 ~~~~A~~~~~~~l~-------~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 139 (408)
+.+.|...|+.+.+ .. .+.+...+|.+|.... +...|..+|.++... .+++..+.+|.++..-.
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT 339 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC
Confidence 44567777777765 33 5567888999998853 678899999999876 44556777787776654
Q ss_pred ---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHH
Q 015351 140 ---FINHARNVWDRAVTLLPRVDQLWYKYIHMEEML----GNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERAR 212 (408)
Q Consensus 140 ---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~ 212 (408)
++..|..+|..|.... +..+.+.++.++..- .+...|...|.++....+....|..-.-.+...+.++.+.
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred ccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHH
Confidence 6789999999998763 467777788877653 4778999999999998843222222222222225666555
Q ss_pred HHHHHHHHhC---CC-hHHHHHHHH-HHH-H---cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----CChH
Q 015351 213 QIYERFVQCH---PK-VSTWIKYAK-FEM-K---MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC----KETE 279 (408)
Q Consensus 213 ~~~~~al~~~---p~-~~~~~~~a~-~~~-~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----~~~~ 279 (408)
..+...-... +. ...++..-. ... . ..+...+...+.++.... +......+++++..- .+++
T Consensus 418 ~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g-----~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 418 ALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG-----NADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc-----CHHHHhhhcceeeecCCCCCChH
Confidence 5554443332 11 111211111 111 1 125566777777765542 466777777777643 4699
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHHhhCCC
Q 015351 280 RARCIYKFALDHIPKGRAEDLYRKFVAFEK-QYGDREGIEDAIVGKRRFQYEDEVRKNPM 338 (408)
Q Consensus 280 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 338 (408)
.|...|.++-... . ..+|. ++.+++ ..|-.. +..|...|+++.+.+..
T Consensus 493 ~a~~~y~~a~~~~-~---~~~~n-lg~~~e~g~g~~~------~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 493 KAAAQYARASEQG-A---QALFN-LGYMHEHGEGIKV------LHLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHHhh-h---HHHhh-hhhHHhcCcCcch------hHHHHHHHHHHHhcCch
Confidence 9999999998865 2 33443 444443 333221 34588899998886654
No 319
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.79 E-value=0.2 Score=37.49 Aligned_cols=102 Identities=21% Similarity=0.402 Sum_probs=56.2
Q ss_pred HHHHHHHH-Hh--cCCChHHHHHHHHHHHHc---c-CHHHHHHHHHHHHhc---------cCCChHHHHHHHHHHHhccC
Q 015351 77 RKEFEDLI-RR--VRWNTGVWIKYAKWEESQ---K-DFNRARSVWERALEV---------DYRNHTLWLKYAEVEMKNKF 140 (408)
Q Consensus 77 ~~~~~~~l-~~--~p~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~ 140 (408)
+..|+..| .. ..+-...|..+..+.... | .-..-..+++++++. +|....+|+.++... ++
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d 81 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE 81 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC
Confidence 45566555 21 223356788888876642 2 333445566666643 344456666666543 22
Q ss_pred HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCChHHHHHHHHH
Q 015351 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAGARQIFER 184 (408)
Q Consensus 141 ~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 184 (408)
...+|..+.... ......|..+|.++...|++.+|.++|+.
T Consensus 82 ---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 ---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred ---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 344555554432 23445566666677777777777666653
No 320
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=95.77 E-value=0.026 Score=30.35 Aligned_cols=29 Identities=72% Similarity=1.280 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015351 207 EVERARQIYERFVQCHPKVSTWIKYAKFE 235 (408)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~a~~~ 235 (408)
.++.|+.+|++.+...|++..|+.+|.+.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHhh
Confidence 45677777777777777777777777653
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.62 E-value=0.28 Score=35.49 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 324 KRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 324 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
.+.+.|.++..+.|..+..++.+|.-+.....|+++..--++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4778899999999999888888888776666778888888887764
No 322
>PRK10941 hypothetical protein; Provisional
Probab=95.44 E-value=0.28 Score=42.33 Aligned_cols=59 Identities=12% Similarity=-0.049 Sum_probs=33.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 166 IHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
-..+.+.++++.|..+.++.+...|+ +.-|...|.++.+.|.+..|+.-++..++.+|+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34455555555566666655555555 555555555555555555565555555555553
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.43 E-value=2.3 Score=39.67 Aligned_cols=182 Identities=10% Similarity=0.026 Sum_probs=126.7
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHH
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYK 164 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (408)
.+.|-+-..+..+..++..+....-...++.+.+... .+-.+++.+++++.+. ..+.-..++++.++.+=++...-..
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHH
Confidence 4456666777777788877777788888888888754 5567788999999888 5566778999999998887777788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh-CCC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--hHHHHH-HHHH
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHW-MPD------QQGWLSYIKFELRYNEVERARQIYERFVQCHPK--VSTWIK-YAKF 234 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~-~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~-~a~~ 234 (408)
++..|.+ ++..++...|.+++.. -|. .++|..+..+.- .+.+.-..+..+.-+.... ..+.+. .-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 8888887 8888999999999853 231 556776655332 3455555555554444332 222222 2244
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q 015351 235 EMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274 (408)
Q Consensus 235 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 274 (408)
|....++++|++++...++.+.. +..+.-.+...++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k---~~~ar~~~i~~lRd 251 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK---DVWARKEIIENLRD 251 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch---hhhHHHHHHHHHHH
Confidence 56778999999999998888665 45555555555544
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.41 E-value=0.13 Score=31.84 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHH
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWL 129 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 129 (408)
..+.+|-.+.+.|++++|+...+.+++.+|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455666667777777777777777777777765543
No 325
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.18 E-value=0.032 Score=45.70 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=52.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+.+..+.++.+.|.++|.+++.+.|....-|+.++....+.|+++.|...|++.++++|.
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 345566788889999999999999998899999999999999999999999999998886
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.02 E-value=0.58 Score=39.02 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=21.1
Q ss_pred ccCHHHHHHHHHHHHhc----c-CC--ChHHHHHHHHHHHhccCH
Q 015351 104 QKDFNRARSVWERALEV----D-YR--NHTLWLKYAEVEMKNKFI 141 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~~----~-p~--~~~~~~~~a~~~~~~~~~ 141 (408)
..+++.|++.|.-|+-. . +. -..+++.+|.++...|+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~ 134 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE 134 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH
Confidence 44677777777766621 1 11 135556666666666653
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.92 E-value=0.16 Score=43.75 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
..++..++..+...|+++.++..+++.+..+|.+..+|..+...|...|+...|+..|+++-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566666777777777777777777777777777777777777777777777777776654
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.83 E-value=2.6 Score=39.51 Aligned_cols=104 Identities=10% Similarity=0.037 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
....+.++.++|-++.|+.+-. +++..+ .+..+.|+.+.|.+..+ ..+++..|..+|.....+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT--------DPDHRF---ELALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence 3444555555555555444322 222222 22345555555543321 1223556666666666666
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 174 NVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
+++-|..+|+++-. +..+.-++...|+.+.-.++.+.+..
T Consensus 362 ~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 362 NIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp BHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666555411 23333444445555554444444443
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.79 E-value=5 Score=40.16 Aligned_cols=266 Identities=14% Similarity=0.033 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------HHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD-QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD------QQGWLS 197 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~ 197 (408)
.++...-+..+..+|...+|+...-+| -+|... .+....+.-....+ -+..+...++.-|. +...+.
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~----~lsll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGS----ELSLLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhccc----chHHHHHHHHhCCHHHHhhCchHHHH
Confidence 466666666777777777766443222 111100 00111111111111 12334444444453 445555
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCC------h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH--HHHHHH
Q 015351 198 YIKFELRYNEVERARQIYERFVQCHPK------V----STWIKYAKFEMKMGEVDRARNVYERAVEKLADDE--EAEQLF 265 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~p~------~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~ 265 (408)
++-.....+++.+|..++.++-..-+. . +.--..+.+....|++++|.+..+.++...|... ......
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 555566678888888888877665431 1 2223346667889999999999999999988732 234556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCC--cchHHHHHHH--HHHHHHcCCchhHHHHHHHHHH-HHHHHHHhhCCCCH
Q 015351 266 VAFAEFEERCKETERARCIYKFALDHIPK--GRAEDLYRKF--VAFEKQYGDREGIEDAIVGKRR-FQYEDEVRKNPMNY 340 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~~~p~~~ 340 (408)
...+.+..-.|++++|+.+...+.+..-. .....+|..+ +.+....|.....+ ..+++ ..+.+-+...|.+.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~---~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE---QEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHhhhcccch
Confidence 67788888899999999999988875222 1123444444 33455666321110 11222 23334444556554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhh
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERAIA----NVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~ 406 (408)
-.....+.++...-+.+.+..-...+++ ..|..-. .|-. + ..++.++ ...|+.++|...
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~--~~~~---~-~~LA~l~-~~~Gdl~~A~~~ 640 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLL--SRLA---L-SMLAELE-FLRGDLDKALAQ 640 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhH--HHHH---H-HHHHHHH-HhcCCHHHHHHH
Confidence 4444444444333234444444444443 2333221 1111 1 3456666 478999998754
No 330
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.77 E-value=1.5 Score=34.23 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
..+....+-...++.+++..++...--+.|..+.+-..-|.++...|++.+|+.+|+.+....|.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 33444555566667777777777777777777777777777777777777777777776665554
No 331
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.59 E-value=0.22 Score=30.79 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
+..+.++..+.+.|++++|+.+.+.+++..|++...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 345677778889999999999999999999999874
No 332
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.57 E-value=4 Score=38.12 Aligned_cols=169 Identities=10% Similarity=0.055 Sum_probs=89.0
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY 198 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 198 (408)
..|-+......+..+....-..+-...+..+++... .+.-++..++++|... ..++--.++++.++.+=+ ...-..+
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 344454555555555555555555666666666653 3356667777777666 455566777777776655 4444455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhC-C---C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-H
Q 015351 199 IKFELRYNEVERARQIYERFVQCH-P---K---VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFA-E 270 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~~-p---~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~ 270 (408)
+..|.+ ++...+..+|.+++... | + .++|..+..+ -..+.+.-.....+.-...... ...+.+... .
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~--~~~Vl~qdv~~ 213 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEG--RGSVLMQDVYK 213 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccc--hHHHHHHHHHH
Confidence 555554 66677777777777654 2 1 1234333321 1234444444444433333321 122222222 3
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 271 FEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 271 ~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
-|....++.+|+.+....++.+..+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchh
Confidence 3444556666666666666654443
No 333
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.51 E-value=3.1 Score=36.54 Aligned_cols=148 Identities=7% Similarity=0.005 Sum_probs=92.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhH
Q 015351 129 LKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV 208 (408)
Q Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 208 (408)
....+...+..+...-++.-..|++++|....++..+++-. ....-+|..+|+++++.... -+.-.+....+|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~---~yr~sqq~qh~~~- 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET---IYRQSQQCQHQSP- 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH---HHhhHHHHhhhcc-
Confidence 34444455556677777777888888888888877776533 34466788888888774321 0001111111111
Q ss_pred HHHHHHHHHHHHhCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 209 ERARQIYERFVQCHPKVSTW--IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286 (408)
Q Consensus 209 ~~A~~~~~~al~~~p~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 286 (408)
..+...+.+.+..+| ..++.+-.++|+..+|.+.++...+..|- .....++-++...+....-|.+...++.
T Consensus 262 -----~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 262 -----QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred -----chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223334444443 46788888999999999999998888774 2345677788888887777766666655
Q ss_pred HH
Q 015351 287 FA 288 (408)
Q Consensus 287 ~a 288 (408)
+-
T Consensus 336 kY 337 (556)
T KOG3807|consen 336 KY 337 (556)
T ss_pred hh
Confidence 54
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.23 E-value=1.1 Score=33.72 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc
Q 015351 222 HPKVSTWIKYAKFEMKMG---EVDRARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR 296 (408)
Q Consensus 222 ~p~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 296 (408)
.++.+..++++..+.... +..+.+.+++..++ ..|.. ..+..+.++.-+.+.|+|++++.+.+..++..|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER--RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc--chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 456666777777776544 55677888888886 44443 345555666777788899999999998888888874
No 335
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.22 E-value=0.7 Score=39.91 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------CCChHHHHH
Q 015351 159 DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQC-------HPKVSTWIK 230 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~ 230 (408)
..++..++..+...|+++.+...+++.+..+|- ..+|..+...+...|+...|+..|++.-+. .|.+.++..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456667777777778888888888888888877 777888888888888888888777776552 234555555
Q ss_pred HHHH
Q 015351 231 YAKF 234 (408)
Q Consensus 231 ~a~~ 234 (408)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 336
>PF13041 PPR_2: PPR repeat family
Probab=94.17 E-value=0.33 Score=29.54 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 194 GWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
.|..+...+.+.|++++|.++|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 337
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.13 E-value=1.6 Score=41.73 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=39.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL 289 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 289 (408)
+..++...+++++|..+-++ .|.- .+.+++-+|+++.+..++++|.+.|-+|=
T Consensus 779 iVqlHve~~~W~eAFalAe~----hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEK----HPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred HhhheeecccchHhHhhhhh----Cccc--cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 34556677889998887765 4442 45678889999988888888888887763
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.79 E-value=1 Score=41.43 Aligned_cols=120 Identities=10% Similarity=-0.011 Sum_probs=57.2
Q ss_pred ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 104 QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFE 183 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 183 (408)
.|++-.|-.-...++...|..|..-...+.+....|+++.+.+.+.-+-............+.+-....|+++.|.+.-+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555544443333333333333444444555555555444
Q ss_pred HHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 015351 184 RWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP 223 (408)
Q Consensus 184 ~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 223 (408)
-.+...-. +++..--+-.....|-++++...+++.+..+|
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 44432211 22222222223334555555555555555554
No 339
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.73 E-value=4.6 Score=35.61 Aligned_cols=77 Identities=10% Similarity=0.036 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh----ccCHHHHHH
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQ----KDFNRARSVWERALEVDYRNHTLWLKYAEVEMK----NKFINHARN 146 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~ 146 (408)
.+...++.+-. -.+......++.++... .+..+|...|..+. ...++...+.+|.++.. ..+..+|..
T Consensus 59 ~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~ 134 (292)
T COG0790 59 KALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALK 134 (292)
T ss_pred HHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHH
Confidence 35555554433 11224445555555442 34566666666332 34455566666666655 336666666
Q ss_pred HHHHHHHhC
Q 015351 147 VWDRAVTLL 155 (408)
Q Consensus 147 ~~~~al~~~ 155 (408)
.|.++....
T Consensus 135 ~~~~Aa~~g 143 (292)
T COG0790 135 YYEKAAKLG 143 (292)
T ss_pred HHHHHHHcC
Confidence 666666653
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.64 E-value=5 Score=37.71 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=90.7
Q ss_pred HHHHHccCHHHHHHHHH--HHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChH
Q 015351 99 KWEESQKDFNRARSVWE--RALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVA 176 (408)
Q Consensus 99 ~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 176 (408)
+...-.|+++.+..+.. +.+..-| .......+.++.+.|..+.|+.+ ..+ +...+ ++..+.|+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~-------~~D-~~~rF---eLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQF-------VTD-PDHRF---ELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHH-------SS--HHHHH---HHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhh-------cCC-hHHHh---HHHHhcCCHH
Confidence 34455788888877775 2333333 44567778888888877776543 333 44433 4457788888
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 015351 177 GARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLA 256 (408)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 256 (408)
.|.++.+. .+++..|..+|.....+|+++-|..+|+++-. +-.+.-+|...|+.+.-.++.+.+.....
T Consensus 336 ~A~~~a~~----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKE----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCC----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHh----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 88765432 23478999999999999999999999888643 34555667778887777776666554421
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015351 257 DDEEAEQLFVAFAEFEERCKETERARCIYKF 287 (408)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 287 (408)
. +. .-....-.|+.++..+++.+
T Consensus 405 ~---n~-----af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 I---NI-----AFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp H---HH-----HHHHHHHHT-HHHHHHHHHH
T ss_pred H---HH-----HHHHHHHcCCHHHHHHHHHH
Confidence 1 11 11222334666666666554
No 341
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.63 E-value=2.1 Score=32.22 Aligned_cols=75 Identities=9% Similarity=0.025 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 299 DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR-KNPMN-YDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
.....++.......+.+. +.+.+.+++..+. .+|.. -+..+.++.-+.+.|+++.++.+.+..++..|++.+.
T Consensus 33 ~s~f~lAwaLV~S~~~~d-----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTED-----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHcccchHH-----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 334445555554444444 6678999999996 55543 4566677777889999999999999999999999875
Q ss_pred HH
Q 015351 377 RY 378 (408)
Q Consensus 377 ~~ 378 (408)
..
T Consensus 108 ~~ 109 (149)
T KOG3364|consen 108 LE 109 (149)
T ss_pred HH
Confidence 43
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.58 E-value=0.55 Score=38.13 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcCChHHH
Q 015351 225 VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADD-EEAEQLFVAFAEFEERCKETERA 281 (408)
Q Consensus 225 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A 281 (408)
+++...+|.+|. ..+.++++.++-++++..+.+ ..+++++..++.++.+.|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444555555444 344555555555555554443 33455555555555555555544
No 343
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.57 E-value=0.34 Score=44.94 Aligned_cols=84 Identities=12% Similarity=-0.097 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHc---cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQ---KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
.|+..|.+++...|.....+..+|.++++. |+.-.|+.-...+++++|....+|+.++.++...+.+.+|++....+
T Consensus 392 ~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 392 GAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred HHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 477888888888888888888888887764 66677777788888888888888888888888888888888888777
Q ss_pred HHhCCCc
Q 015351 152 VTLLPRV 158 (408)
Q Consensus 152 l~~~p~~ 158 (408)
...+|.+
T Consensus 472 q~~~Ptd 478 (758)
T KOG1310|consen 472 QMSFPTD 478 (758)
T ss_pred hhcCchh
Confidence 7777753
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.49 E-value=2.7 Score=32.32 Aligned_cols=93 Identities=8% Similarity=-0.139 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 154 (408)
.+..++..+--..|+.+.+-..-|.++...|++.+|..+|+...+..|..+..--.++.++...|+.
T Consensus 28 D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp------------- 94 (153)
T TIGR02561 28 DAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA------------- 94 (153)
T ss_pred HHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh-------------
Confidence 3666666666678999999999999999999999999999999988777776666666666666543
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 155 LPRVDQLWYKYIHMEEMLGNVAGARQIFERWM 186 (408)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 186 (408)
.|..++.-....+...+++.+.+...
T Consensus 95 ------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 ------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 36666665556666666665555443
No 345
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=2.9 Score=39.62 Aligned_cols=116 Identities=16% Similarity=-0.011 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHH--HHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHH-HHHHH
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKY--AKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNV-WDRAV 152 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-~~~al 152 (408)
+...+..-+..+|.++.+.... .-.+...++...+.-.+..++..+|.+..+...++......|..-.+... -+.+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444455677787775554 44445567777888888889999999999998888876666655554444 44478
Q ss_pred HhCCCchHHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 153 TLLPRVDQLWYKY------IHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 153 ~~~p~~~~~~~~~------~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
...|++......+ +++....|+..++....++++...|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 8888876654444 67777778888888888888887776
No 346
>PF13041 PPR_2: PPR repeat family
Probab=93.14 E-value=0.5 Score=28.72 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 224 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
+...|..+...+.+.|++++|.++|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3344445555555555555555555555443
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.12 E-value=0.84 Score=41.95 Aligned_cols=117 Identities=5% Similarity=-0.102 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 154 (408)
.|-.....++...|.++..-...+.+....|+|+.+.....-+-..-.........+.......|++++|...-+-.+..
T Consensus 307 aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 307 AASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 45566667889999999999999999999999999999887766554444455556666777889999999888888877
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 155 LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
.-..+++...-+-.....|-++++...+++.+.++|.
T Consensus 387 eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 387 EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666776665566667788899999999999999886
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.85 E-value=0.31 Score=28.09 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 341 DIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
.++.++|.++...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999999874
No 349
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.84 E-value=0.43 Score=44.31 Aligned_cols=87 Identities=18% Similarity=0.050 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHH
Q 015351 105 KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK---FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI 181 (408)
Q Consensus 105 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 181 (408)
+.+..|+..|.+++..-|....++..++.++++.+ +.-.|+.--..|++++|....+|+.+++++...+++.+|+++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 45678899999999999999999999999888864 666677777888999999999999999999999999999998
Q ss_pred HHHHHHhCCC
Q 015351 182 FERWMHWMPD 191 (408)
Q Consensus 182 ~~~al~~~p~ 191 (408)
...+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 8877777774
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.59 E-value=1.7 Score=35.37 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=57.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHcC
Q 015351 168 MEEMLGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCHP-----KVSTWIKYAKFEMKMG 239 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~a~~~~~~~ 239 (408)
++..+..-+.|...|-++-. .|. +++...+|.+|. ..+.++++.++-++++..+ +++++..++.++.+.|
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHhhccCcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 44555555667777765533 333 778888888887 5688999999999998753 5788999999999999
Q ss_pred CHHHHH
Q 015351 240 EVDRAR 245 (408)
Q Consensus 240 ~~~~A~ 245 (408)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 998773
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.56 E-value=0.3 Score=28.11 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALE 119 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (408)
++..+|.++...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666666654
No 352
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.28 E-value=4.1 Score=31.22 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=22.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Q 015351 99 KWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN 138 (408)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~ 138 (408)
..+...+.+......++.++..++.++.+...++.++.+.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3344445566666666666665555555666666655544
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.22 E-value=0.53 Score=26.41 Aligned_cols=30 Identities=10% Similarity=-0.009 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH--HHHhccC
Q 015351 93 VWIKYAKWEESQKDFNRARSVWE--RALEVDY 122 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~--~al~~~p 122 (408)
.|..+|-.+..+|++++|+.+|+ -+...+|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 45555555555566666666532 4444443
No 354
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=92.15 E-value=12 Score=36.13 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhccCCCh-----HHHHHHHHHHHh------------ccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015351 106 DFNRARSVWERALEVDYRNH-----TLWLKYAEVEMK------------NKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168 (408)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 168 (408)
+-+++..+....-...|.++ ++|..+..++.. -|+.++|+...++.....+.. -.....+.+
T Consensus 273 ~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~-lpi~~~~~l 351 (547)
T PF14929_consen 273 PQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCA-LPIRLRAHL 351 (547)
T ss_pred cHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCcc-chHHHHHHH
Confidence 33444444433335555555 455444444432 145555555554433332221 112222333
Q ss_pred HHHcC--ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHH---HHHhCCChHHHHHHHHHHHH-cCCH
Q 015351 169 EEMLG--NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYER---FVQCHPKVSTWIKYAKFEMK-MGEV 241 (408)
Q Consensus 169 ~~~~~--~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~---al~~~p~~~~~~~~a~~~~~-~~~~ 241 (408)
....+ ....-..+|+.+++.+|. ......++..+.. ...+.++++- -+...|+.++|..++.++.+ .+++
T Consensus 352 le~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~ 428 (547)
T PF14929_consen 352 LEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRF 428 (547)
T ss_pred HHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccc
Confidence 33333 344455566666666665 2222222222111 2223333331 12233556666666666655 4444
Q ss_pred HHHHHHHHHH
Q 015351 242 DRARNVYERA 251 (408)
Q Consensus 242 ~~A~~~~~~a 251 (408)
+.-.+....+
T Consensus 429 ~~~~e~~~~~ 438 (547)
T PF14929_consen 429 EDKEEDHKSA 438 (547)
T ss_pred cccHHHHHHH
Confidence 4333444444
No 355
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=11 Score=35.64 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh------hCCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCC
Q 015351 301 YRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR------KNPM-NYDIWFDYIRLEESVGN-KERAREVYERAIANVPP 372 (408)
Q Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~------~~p~-~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~ 372 (408)
+...+.+.+..|+... |...|..+++ .++. -|-+++.+|.++...|. ..+++.++.+|-.-..+
T Consensus 452 ~lL~g~~lR~Lg~~~~--------a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEV--------APKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHcCCHHH--------HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 4445667778887544 5556665553 2232 46788999999999888 99999999999876643
No 356
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.05 E-value=1.5 Score=37.45 Aligned_cols=58 Identities=17% Similarity=0.067 Sum_probs=33.4
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
.+...++.+.|..+.++.+..+|.++.-+..-|.+|.+.|.+.-|++-++..+...|+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 3444455555555555555555555555555555555555555555555555555555
No 357
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.86 E-value=5.4 Score=31.66 Aligned_cols=118 Identities=8% Similarity=-0.016 Sum_probs=80.0
Q ss_pred HcCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHH-----HHHHHHHHHHcCCHH
Q 015351 171 MLGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVST-----WIKYAKFEMKMGEVD 242 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~a~~~~~~~~~~ 242 (408)
+.+..++|...|...-+-.-. .-..+..+.+..+.|+-..|+..|..+-...|.+.+ .+.-+.++...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 346677777777766554333 333455567777788888899999888777665433 344555677888888
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 015351 243 RARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
......+-.- .+.++.-......++..-.+.|++.+|.+.|.+...
T Consensus 150 dV~srvepLa--~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLA--GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhcc--CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8777665432 122233455666778888889999999999998876
No 358
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.65 E-value=8.3 Score=33.37 Aligned_cols=78 Identities=9% Similarity=-0.006 Sum_probs=39.1
Q ss_pred HHHHcCChHHHHHHHHHHHhh----CCC----------cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC
Q 015351 271 FEERCKETERARCIYKFALDH----IPK----------GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN 336 (408)
Q Consensus 271 ~~~~~~~~~~A~~~~~~al~~----~p~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 336 (408)
-+.-.++...|...+..-++. .|. +...--+..+.-.-.+.++... +..-...|+..|+.+
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~-----F~~L~~~Y~~~L~rd 224 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPL-----FKKLCEKYKPSLKRD 224 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHH-----HHHHHHHTHH---HH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHH-----HHHHHHHhCcccccc
Confidence 344667888887777666554 221 1111112222222223344332 555667777778778
Q ss_pred CCCHHHHHHHHHHHHHc
Q 015351 337 PMNYDIWFDYIRLEESV 353 (408)
Q Consensus 337 p~~~~~~~~~~~~~~~~ 353 (408)
|........+|..|...
T Consensus 225 ~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 225 PSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 87777777888887653
No 359
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.64 E-value=18 Score=37.38 Aligned_cols=91 Identities=11% Similarity=-0.053 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHH---HHHHHHHHH----cc---CHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc
Q 015351 70 ADYRLRKRKEFEDLIRRVRWNTGVW---IKYAKWEES----QK---DFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK 139 (408)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~----~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 139 (408)
.+.+++|...|++.-...|.-.+.+ ...|-.... .| .+++|+.-|++.- ..|.-|-=|...|.+|...|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhh
Confidence 3567899999999999998766543 333333322 23 4667777777653 35677777888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCchHH
Q 015351 140 FINHARNVWDRAVTLLPRVDQL 161 (408)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~ 161 (408)
++++=++.|.-|++..|++|.+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999988754
No 360
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.53 E-value=0.99 Score=31.97 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcH------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 015351 236 MKMGEVDRARNVYERAVEKLADDE------EAEQLFVAFAEFEERCKETERARCIYKFALDHI 292 (408)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 292 (408)
.+.|++..|.+.+.+.+....... ......+.++.+....|++++|...++++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456777777777766665543321 123556778888888999999999999998753
No 361
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.38 E-value=0.97 Score=38.80 Aligned_cols=59 Identities=25% Similarity=0.197 Sum_probs=47.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM 186 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 186 (408)
....+..+...|.+.+|+++.+++++.+|-+...|..+..++...|+--.|...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44566778888888888888888888888888888888888888888777777766654
No 362
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.33 E-value=3.2 Score=43.24 Aligned_cols=69 Identities=16% Similarity=-0.000 Sum_probs=32.3
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--------ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALE--------VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
..+|.....+..++.++...|+.++|+..-.++.- ..|+....+..++.++...++...|...+.++..
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 33555555555555555555555555554444431 1222233334444444444444444444444443
No 363
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.24 E-value=12 Score=34.56 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHH----HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHH-------------H--HHH
Q 015351 72 YRLRKRKEFEDLI----RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLW-------------L--KYA 132 (408)
Q Consensus 72 ~~~~A~~~~~~~l----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------~--~~a 132 (408)
+..+.++..+..+ +..|+++-+-+..|-...+.+++.+|...+..--..-......| + ..|
T Consensus 56 ffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a 135 (549)
T PF07079_consen 56 FFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEA 135 (549)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHH
Confidence 3334444444433 44677777777777888889999999998887765422222222 1 235
Q ss_pred HHHHhccCHHHHHHHHHHHHHh
Q 015351 133 EVEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~ 154 (408)
.++...|.+.+++.++.+.+..
T Consensus 136 ~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 136 HSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhcCCcchHHHHHHHHHHH
Confidence 5777889999999999998865
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.20 E-value=10 Score=33.44 Aligned_cols=178 Identities=11% Similarity=0.039 Sum_probs=119.9
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc----cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCC
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN----KFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM----LGN 174 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~ 174 (408)
..+++..+...+..+-.. .++.....++.++... .+..+|...|+.+. ...++...+.+|.++.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccC
Confidence 456778888888887652 2235566666666554 36888999998444 44557788889988877 448
Q ss_pred hHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----cCCH
Q 015351 175 VAGARQIFERWMHWMPD--QQGWLSYIKFELRYN-------EVERARQIYERFVQCHPKVSTWIKYAKFEMK----MGEV 241 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~----~~~~ 241 (408)
..+|...|+++.+.... ......++.++..-+ +...|...|.++-... +......++.+|.. ..++
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCcCH
Confidence 89999999999887443 233555665555421 2347888888887765 56677777777653 2388
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhh
Q 015351 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCK---------------ETERARCIYKFALDH 291 (408)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~---------------~~~~A~~~~~~al~~ 291 (408)
.+|...|.++.+... ...++.++ ++...| +...|...+..+...
T Consensus 208 ~~A~~wy~~Aa~~g~-----~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 208 KKAFRWYKKAAEQGD-----GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HHHHHHHHHHHHCCC-----HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 999999999988743 45566666 555544 555555555555543
No 365
>PF12854 PPR_1: PPR repeat
Probab=91.13 E-value=0.61 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 223 PKVSTWIKYAKFEMKMGEVDRARNVYER 250 (408)
Q Consensus 223 p~~~~~~~~a~~~~~~~~~~~A~~~~~~ 250 (408)
|+...|..+...+.+.|+.++|.++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5555666666666666666666666654
No 366
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.13 E-value=4.9 Score=41.97 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=49.3
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--------PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW--- 188 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 188 (408)
.+|.....+..++.++...|+.++|+..-.+++.+. |+....+..++.++...++...|...+.++...
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 455555666666666666666666665555554331 222233444444444455555555555544432
Q ss_pred -----CCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 189 -----MPD-QQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 189 -----~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
+|. ..+...+..++...+.++.|+.+.+.|+.
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 222 33333444444444455555555555544
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.89 E-value=1.2 Score=38.24 Aligned_cols=61 Identities=20% Similarity=0.129 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
.+....+..|...|.+.+|.++.+++++.+|- ...|..+..++...|+--.+.+.|++.-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34556678889999999999999999999998 88999999999999998888888877644
No 368
>PF12854 PPR_1: PPR repeat
Probab=90.76 E-value=0.76 Score=25.31 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 338 MNYDIWFDYIRLEESVGNKERAREVYER 365 (408)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 365 (408)
.|...|..++..+.+.|+.++|.++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3678899999999999999999999986
No 369
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.64 E-value=1.2 Score=24.96 Aligned_cols=32 Identities=9% Similarity=-0.099 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHH--HHHHHHhCCC
Q 015351 126 TLWLKYAEVEMKNKFINHARNV--WDRAVTLLPR 157 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~--~~~al~~~p~ 157 (408)
+.|..+|-.+...|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4466666677777777777777 3355555543
No 370
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.44 E-value=2.4 Score=29.95 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHhCC-----C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 205 YNEVERARQIYERFVQCHP-----K-----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 205 ~~~~~~A~~~~~~al~~~p-----~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
.|++..|++.+.+.+.... . ....+.++.++...|++++|...++++++....
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4555555555555444321 1 123566777777888888888888888776443
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.34 E-value=3.7 Score=27.68 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=30.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015351 235 EMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKF 287 (408)
Q Consensus 235 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 287 (408)
++...+.++|+..++++++..++.++-..+.-.++..+...|++.+++..--+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666777777777777666443444444455555566666655554433
No 372
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.29 E-value=0.54 Score=24.02 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 015351 93 VWIKYAKWEESQKDFNRARSVWE 115 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~ 115 (408)
+...+|..+...|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455666666666666665554
No 373
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.11 E-value=8.2 Score=30.68 Aligned_cols=116 Identities=11% Similarity=0.016 Sum_probs=49.2
Q ss_pred ccCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH-----HHHHHHHHHhhhHHH
Q 015351 138 NKFINHARNVWDRAVTLLPRV--DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGW-----LSYIKFELRYNEVER 210 (408)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~ 210 (408)
.+..++|...|...-...-.+ .-+.+..+.+..+.|+...|...|..+-...|.+.+. +.-+-++...|.|++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 344455555554443332211 1223344445555555555555555554433332222 222233444555554
Q ss_pred HHHHHHHHHHh-CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015351 211 ARQIYERFVQC-HP-KVSTWIKYAKFEMKMGEVDRARNVYERAVE 253 (408)
Q Consensus 211 A~~~~~~al~~-~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 253 (408)
...-.+-.-.. +| .....-.++..-++.|++..|.+.|.....
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44433322111 11 122333444444555556666555555444
No 374
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.04 E-value=27 Score=36.48 Aligned_cols=159 Identities=12% Similarity=0.126 Sum_probs=91.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCc-----------------------------hHHHHHHHHHHHHcCChHHHH
Q 015351 129 LKYAEVEMKNKFINHARNVWDRAVTLLPRV-----------------------------DQLWYKYIHMEEMLGNVAGAR 179 (408)
Q Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----------------------------~~~~~~~~~~~~~~~~~~~A~ 179 (408)
+.+|.++...|...+|+.+|.+|..-.... ...|....++....+-.+.+.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 444555555666666666666665433221 122334456667777778888
Q ss_pred HHHHHHHHhCCC-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHH--------
Q 015351 180 QIFERWMHWMPD-----QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV----STWIKYAKFEMKMGEVD-------- 242 (408)
Q Consensus 180 ~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~a~~~~~~~~~~-------- 242 (408)
++-.+|++.-|+ +-+....-+.....|.+-+|.+. +-.+|+. .....+..++++.|..+
T Consensus 1004 QlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlvivLfecg~l~~L~~fpfi 1079 (1480)
T KOG4521|consen 1004 QLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLVIVLFECGELEALATFPFI 1079 (1480)
T ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCcc
Confidence 888888876554 33344444555666766666543 3334542 33556666666666543
Q ss_pred ----HHHH-HHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCC
Q 015351 243 ----RARN-VYERAVEKLADDEEAEQLFVAFAEFEERCKETERAR-CIYKFALDHIP 293 (408)
Q Consensus 243 ----~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p 293 (408)
+... +++.+-...|-. ....+..+--++...+++.+|- .+|+.+...-.
T Consensus 1080 gl~~eve~~l~esaaRs~~~m--k~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1080 GLEQEVEDFLRESAARSSPSM--KKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred chHHHHHHHHHHHHhhcCccc--cccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 4444 445555544432 3455666666777888887764 67888876543
No 375
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.92 E-value=0.53 Score=24.03 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 341 DIWFDYIRLEESVGNKERAREVYER 365 (408)
Q Consensus 341 ~~~~~~~~~~~~~g~~~~A~~~~~~ 365 (408)
.+...++..+...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4567899999999999999998764
No 376
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.84 E-value=15 Score=33.39 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=70.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCC--C--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---CcHHHHHHHH
Q 015351 200 KFELRYNEVERARQIYERFVQCHP--K--------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLA---DDEEAEQLFV 266 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~~~p--~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~ 266 (408)
.++..++++.+|.++-+..+.... + ..+|+-+...+...|+...-+.++...+.... +......+.+
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 445556777777777666554321 1 24466666666677776666666666554321 1222344445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHH----HHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC
Q 015351 267 AFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKF----VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM 338 (408)
Q Consensus 267 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 338 (408)
.+.+.|...+.+++|.....+.. .|......-|..| +.+-.-+++ +..|.+.|-+|+...|.
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqld--------YssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLD--------YSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcc--------hhHHHHHHHHHHHhCcc
Confidence 55666777777777777666543 2332222222222 222222333 66677777777777775
No 377
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.20 E-value=20 Score=33.92 Aligned_cols=80 Identities=8% Similarity=0.010 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhhhHHHHHHHHH
Q 015351 142 NHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-----QQGWLSYIKFELRYNEVERARQIYE 216 (408)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~ 216 (408)
+...+.+.......|.++......+.++...|+.+.|+.+++..+. +. .-.+...+-+..-+.++.+|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444455555556677666666777777777777777777776665 22 2223334444455566777777777
Q ss_pred HHHHhCC
Q 015351 217 RFVQCHP 223 (408)
Q Consensus 217 ~al~~~p 223 (408)
...+...
T Consensus 328 ~L~desd 334 (546)
T KOG3783|consen 328 LLRDESD 334 (546)
T ss_pred HHHhhhh
Confidence 6666554
No 378
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.69 E-value=14 Score=31.41 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhh
Q 015351 356 KERAREVYERAIA-----NVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406 (408)
Q Consensus 356 ~~~A~~~~~~al~-----~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~ 406 (408)
.+.|...|++|+. ..|.+|- .+.+.++|+.|+--..|+.++|+++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~------rLgl~LN~svF~yei~~~~~~A~~i 191 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPL------RLGLALNYSVFYYEILNDPEKAIEI 191 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHH------HHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcH------HHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4678888888876 3566664 4557888998883368999999875
No 379
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.68 E-value=1.2 Score=25.35 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 154 (408)
++..+|.+.+..++++.|+.-|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 380
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.42 E-value=5.2 Score=34.28 Aligned_cols=60 Identities=13% Similarity=-0.060 Sum_probs=49.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChH
Q 015351 167 HMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS 226 (408)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 226 (408)
..+...++++.|..+.++.+..+|. +.-+..-|.+|.+.|.+.-|++-++..+..+|+..
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 4566778888899999999998888 77788888888888888999999999888888643
No 381
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.33 E-value=9.7 Score=29.13 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=16.0
Q ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 015351 138 NKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM 171 (408)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 171 (408)
.+........++.++..++.++.....++.++..
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 3444445555555544444444444444444443
No 382
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.31 E-value=1.2 Score=25.33 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEV 120 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (408)
+++..+|.+....++++.|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999864
No 383
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=88.20 E-value=2 Score=24.84 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHccCHHHH
Q 015351 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRA 110 (408)
Q Consensus 79 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 110 (408)
.|.++|..+|.+...++.||.++...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46677777888888888888888888877554
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=13 Score=35.69 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM 186 (408)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 186 (408)
+..+.|+++.|.++..++ +++.-|..+|++....+++..|.++|.++-
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 345556666665544333 345566777777777777777777776653
No 385
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.66 E-value=11 Score=34.47 Aligned_cols=84 Identities=14% Similarity=0.009 Sum_probs=55.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCc------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-H
Q 015351 132 AEVEMKNKFINHARNVWDRAVTLLPRV------------------DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-Q 192 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~~p~~------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~ 192 (408)
|..+.++++|..|..-|..++++..+- ..+-..+..+|.+.++.+-|+..-.+.+-.+|. .
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 335666777777777777777764221 123346677888888888888888888888887 5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Q 015351 193 QGWLSYIKFELRYNEVERARQIY 215 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~A~~~~ 215 (408)
...+.-+.+.....++.+|..-+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666665443
No 386
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.64 E-value=19 Score=31.79 Aligned_cols=27 Identities=7% Similarity=0.071 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWM 186 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al 186 (408)
++|...+.+|.+.|+.+.|.+.+.+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455555555555555555555444433
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.63 E-value=2.7 Score=24.79 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 015351 230 KYAKFEMKMGEVDRARNVYERAV 252 (408)
Q Consensus 230 ~~a~~~~~~~~~~~A~~~~~~al 252 (408)
.+|..|...|+.+.|++++++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555555555555
No 388
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.28 E-value=21 Score=31.74 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHH
Q 015351 175 VAGARQIFERWMHWMP-D-QQGWLSYIKFELR-----YNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p-~-~~~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~ 247 (408)
.+++...+.++..... . -.+--.++.+..+ .-++.....+|.-.....|++-+-++.+-.......+..++.+
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ 351 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAM 351 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHH
Confidence 4567777777776543 2 2222222233222 2356777788888888888887777777666666677888888
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 248 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
.+-.... |.-......|..-+.++.+.|+.++|...|++++...++.
T Consensus 352 ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 352 VEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 8776654 2211255667788999999999999999999999977664
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.25 E-value=7.5 Score=32.16 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=30.6
Q ss_pred HhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 136 MKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
.+.+..++++...+.-++..|.+......+.+++.-.|++++|..-++-+-++.|+
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 33445555555555555555555555555555555555555555555555555554
No 390
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.79 E-value=36 Score=33.96 Aligned_cols=121 Identities=14% Similarity=0.041 Sum_probs=64.2
Q ss_pred HcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCch
Q 015351 237 KMGEVDRARNVYERAVEKLADD-EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDRE 315 (408)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~ 315 (408)
...+.+.|...+.+......-+ .....++..++.-....+...+|...+..+.....++ .++.....+....++.+
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~---~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST---SLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc---HHHHHHHHHHHHccCHH
Confidence 4456677777777654444321 1123444445544444433566777777655432222 33333344444566644
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015351 316 GIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIA 368 (408)
Q Consensus 316 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 368 (408)
. ....+...-........-.+-+|+.+...|+.++|...|+++..
T Consensus 330 ~--------~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 G--------LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred H--------HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3 33333332221123444555677777778888888888888643
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.49 E-value=1.7 Score=25.64 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 015351 95 IKYAKWEESQKDFNRARSVWERALE 119 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~ 119 (408)
+.+|..|...|+.+.|+.+++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4577788888888888888888774
No 392
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.36 E-value=3.3 Score=36.14 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=33.9
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 015351 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM 171 (408)
Q Consensus 110 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 171 (408)
|+..|.+|+...|.+...|..+|.+....|+.-.|+-.|-|++....-.+.+..++..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666664432224455555544444
No 393
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=86.10 E-value=5.9 Score=36.33 Aligned_cols=45 Identities=18% Similarity=0.028 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 107 FNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
+-+|+.+++.++..+|.+..+.+.+..+|...|-...|...|...
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 446777777788888888888888888888888888777777554
No 394
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=85.89 E-value=34 Score=32.89 Aligned_cols=118 Identities=15% Similarity=-0.042 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHH--HHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHH-H
Q 015351 107 FNRARSVWERALEVDYRNHTLWLKY--AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIF-E 183 (408)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~-~ 183 (408)
...++..+...+..+|.++.+.... .-.+...+....+...+..++..+|.+......++......|....+...+ +
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3335555666666777777765544 444555666777777778888888887777777777666665555544444 3
Q ss_pred HHHHhCCC-HHH------HHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 184 RWMHWMPD-QQG------WLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 184 ~al~~~p~-~~~------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
.+....|+ ... ++.++......|+..++.....++....|.
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 36666665 221 122345555556666666666666666653
No 395
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.64 E-value=25 Score=31.21 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHhcc--------------------------CHHHHHHHHHHHHHhC-CCchH
Q 015351 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNK--------------------------FINHARNVWDRAVTLL-PRVDQ 160 (408)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------------------------~~~~A~~~~~~al~~~-p~~~~ 160 (408)
++|+.+-.-.+.+.|..+++.-..+.++.... -++++...+.+++... |....
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 56777777777899999998888877776641 3688888999988775 44333
Q ss_pred HHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---ChHHHHHHH
Q 015351 161 LWYKYIHMEEM-----LGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHP---KVSTWIKYA 232 (408)
Q Consensus 161 ~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~a 232 (408)
+.-.++.++.. .-++..-..+|.-.....|++.+-++-+-..........++...+-...... ....+-..+
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~Ra 372 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARA 372 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHH
Confidence 33344444433 2367777888888888889866656666555555556777777766665421 234567779
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCc
Q 015351 233 KFEMKMGEVDRARNVYERAVEKLADD 258 (408)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~al~~~p~~ 258 (408)
.++.+.|+.++|...|++++...++.
T Consensus 373 dlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 373 DLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 99999999999999999999998873
No 396
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=85.47 E-value=1.6 Score=22.91 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=14.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 015351 94 WIKYAKWEESQKDFNRARSVWERAL 118 (408)
Q Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al 118 (408)
|..+.+.+.+.|++++|..+|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4455555556666666666665544
No 397
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=23 Score=34.42 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=67.8
Q ss_pred HHHhhhHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q 015351 202 ELRYNEVERARQIYERFVQCHPK-------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274 (408)
Q Consensus 202 ~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 274 (408)
..+..+|..+++.|...+..-|+ ......++-+|....+.|.|.+++++|-+.+|. ++-...........
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~---~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ---SPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc---cHHHHHHHHHHHHH
Confidence 44567889999999999987763 245677788889999999999999999998887 45555555555667
Q ss_pred cCChHHHHHHHHHHHhhC
Q 015351 275 CKETERARCIYKFALDHI 292 (408)
Q Consensus 275 ~~~~~~A~~~~~~al~~~ 292 (408)
.|.-++|..+........
T Consensus 441 E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hcchHHHHHHHHHHHhhh
Confidence 788888988887776543
No 398
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=84.48 E-value=14 Score=27.29 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=11.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 015351 232 AKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
+..+...|+.++|...|+.+-+.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHH
Confidence 44445555555555555555443
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.28 E-value=5.3 Score=32.72 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 208 VERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
.+..++..++.++..|++.++..++.++...|+.++|....+++...+|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44556666777777788888888888888888888888888888888774
No 400
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=83.90 E-value=2.1 Score=22.42 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=15.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
|..+...+.+.|++++|..+|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555566666666666666655543
No 401
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.57 E-value=8.4 Score=35.17 Aligned_cols=88 Identities=17% Similarity=0.022 Sum_probs=67.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccC--------CC----------hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch
Q 015351 98 AKWEESQKDFNRARSVWERALEVDY--------RN----------HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD 159 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p--------~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (408)
|.-+.++++|..|..-|..+|++.. .. .-+--.+..||+..++.+-|+....+.+..+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4455667777777777777775432 11 12334678899999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERW 185 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~a 185 (408)
.-++.-+.+.....+|.+|...+.-+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887666544
No 402
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.31 E-value=8.8 Score=25.94 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=23.6
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHH---HHhccCHHHHHH
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEV---EMKNKFINHARN 146 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~---~~~~~~~~~A~~ 146 (408)
...+..+|+..+.++++..++.+.-|..+|.+ +...|++.+.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666655555555443 334444444433
No 403
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.02 E-value=41 Score=31.48 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------cCC--------------hHHHHHHHHHH
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM-------LGN--------------VAGARQIFERW 185 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------~~~--------------~~~A~~~~~~a 185 (408)
....+|++.+..++++.|...|+.+...... ..+|..+|-++.. .+. ++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 3455888888889999999888888775543 4566666544322 121 12233333331
Q ss_pred HH---hCCC--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015351 186 MH---WMPD--QQGWLSYIKFELRYNEVERARQIYERFVQC--HP------KVSTWIKYAKFEMKMGEVDRARNVYERAV 252 (408)
Q Consensus 186 l~---~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 252 (408)
-. ..|. ....+..+.++...|.+.+|...+-+.... .. ..-++-..+.++ ..+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~ 354 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASL 354 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccc
Confidence 10 0111 334444455555566655555544444433 11 111222233333 001
Q ss_pred HH-cC-Cc---HHHHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 253 EK-LA-DD---EEAEQLFVA-FAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 253 ~~-~p-~~---~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
.. .| .. .....+|+. -|.-+.+.|....|..+|.+++......
T Consensus 355 ~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 355 RSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 11 01 00 012334443 4677888999999999999998866543
No 404
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.85 E-value=12 Score=36.84 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCC--H
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV------DQLWYKYIHMEEM---LGNVAGARQIFERWMHWMPD--Q 192 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~--~ 192 (408)
++++-..+...|....+|+.-+++.+.. +..|+. ..+.+.|+-.+-+ -|+.++|+.+.-.+++.... +
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4455566666666677777666655543 333421 1222233333322 36677888888777776554 6
Q ss_pred HHHHHHHHHHHH---------hhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 015351 193 QGWLSYIKFELR---------YNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMG 239 (408)
Q Consensus 193 ~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~ 239 (408)
+++..-|.+|.. .+..+.|++.|+++++..|....-++++.++...|
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh
Confidence 666666665543 35677899999999999887777777777776666
No 405
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.43 E-value=19 Score=34.67 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
.+...+++|...|+...- -.+..+.|+++.|..+..++ ++..=|..+|+..+..+++..|.++|.++-.
T Consensus 626 ~~g~~e~AL~~s~D~d~r----Felal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 626 SQGMKEQALELSTDPDQR----FELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hccchHhhhhcCCChhhh----hhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 344556677666554332 23456778888888776654 6677899999999999999999999998754
No 406
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.26 E-value=28 Score=29.01 Aligned_cols=59 Identities=10% Similarity=-0.090 Sum_probs=40.2
Q ss_pred HHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc
Q 015351 100 WEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV 158 (408)
Q Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (408)
-+.+.+.+.+++...+.-++..|.+......+.++++-.|++++|..-++-+-++.|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34455666777777777777777777766777777777777777777777776666654
No 407
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.06 E-value=8.3 Score=33.59 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK 137 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 137 (408)
|+..|.+|+...|++...|..+|-++...|+.-.|+-.|-|++...--.+.+...+..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999986543347777777776666
No 408
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.01 E-value=41 Score=33.39 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=85.2
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hccCCChHHHH---HHHHHHHhc-----c--C-----HHHHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERAL---EVDYRNHTLWL---KYAEVEMKN-----K--F-----INHARNVW 148 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~---~~a~~~~~~-----~--~-----~~~A~~~~ 148 (408)
.|....+-+...++|+..|+|++|+++--++= ..++++...-. ...+.+... + . .+.-..+.
T Consensus 55 F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv 134 (929)
T KOG2062|consen 55 FPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIV 134 (929)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHH
Confidence 34444555677899999999999999877762 34444432211 122221111 1 1 34567778
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhC---C
Q 015351 149 DRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM-HWMPDQQGWLSYIKFELRYNE-VERARQIYERFVQCH---P 223 (408)
Q Consensus 149 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~---p 223 (408)
+++++.+-+..+.|..+|-.... ....++++|+ +.+........+..+.....+ .+--.++++..++.. |
T Consensus 135 ~rmi~kcl~d~e~~~aiGia~E~-----~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~ 209 (929)
T KOG2062|consen 135 ERMIQKCLDDNEYKQAIGIAFET-----RRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLP 209 (929)
T ss_pred HHHHHHhhhhhHHHHHHhHHhhh-----hhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 88888877766777766654432 2334455542 222223333333343333332 233333444444432 2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015351 224 KVSTWIKYAKFEMKMGEVDRARNVYERAVE 253 (408)
Q Consensus 224 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 253 (408)
+ +-++..++++.-..+.+.+.+++++.++
T Consensus 210 ~-PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 210 S-PDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred C-CCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 2 2244556666666666666666666665
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.67 E-value=13 Score=30.45 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 015351 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPA 373 (408)
Q Consensus 322 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 373 (408)
....++..++.+...| ++.++..++.++...|+.++|.....++....|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3446777888888888 78999999999999999999999999999999944
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.53 E-value=44 Score=30.82 Aligned_cols=59 Identities=10% Similarity=-0.002 Sum_probs=41.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCCchH--HHHHH--HHHHHHcCChHHHHHHHHHHHHh
Q 015351 130 KYAEVEMKNKFINHARNVWDRAVTLLPRVDQ--LWYKY--IHMEEMLGNVAGARQIFERWMHW 188 (408)
Q Consensus 130 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~--~~~~~~~~~~~~A~~~~~~al~~ 188 (408)
..+.-....++|..|.++|...+..-|.... .+..+ |..++..-++.+|.+.+++.+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566888999999999999986444343 33333 33346677889999999988764
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.19 E-value=20 Score=33.14 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH--------hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERAL--------EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 154 (408)
+...+.+++.-.||+..|+++++..- ...+-+..+++..|-+++..+++.+|++.|...+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788899999999877642 112234567777788888888888888888777654
No 412
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=81.07 E-value=13 Score=33.25 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--HHHHHHHHHH
Q 015351 141 INHARNVWDRAVTLLPR---VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQGWLSYIKF 201 (408)
Q Consensus 141 ~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~ 201 (408)
.++....+...+...|+ ....|..++.++...|.++..+.+|++|+..... .++...++.+
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34555566666666664 2356777777777777777777777777665544 3444444443
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.90 E-value=34 Score=29.11 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHh-----hCCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 015351 322 VGKRRFQYEDEVR-----KNPMNYD---IWFDYIRLE-ESVGNKERAREVYERAIA 368 (408)
Q Consensus 322 ~~~A~~~~~~al~-----~~p~~~~---~~~~~~~~~-~~~g~~~~A~~~~~~al~ 368 (408)
.++|...|++|+. +.|.+|. +.++++.|+ .-.|+.++|+.+-++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5667778887776 4577764 556677776 448999998888777765
No 414
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=80.56 E-value=58 Score=31.59 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHc------------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 015351 142 NHARNVWDRAVTLLPRVD-----QLWYKYIHMEEML------------GNVAGARQIFERWMHWMPDQQGWLSYIKFELR 204 (408)
Q Consensus 142 ~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (408)
+++..+....-...|+++ ++|..+..++... |+.++|+...++.....+..-.....+.+...
T Consensus 275 ee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~ 354 (547)
T PF14929_consen 275 EEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIRLRAHLLEY 354 (547)
T ss_pred HHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHHHHHHHHHH
Confidence 344444433334556666 7777777776432 56677776666543322222222333444444
Q ss_pred hh--hHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHH---HHHcCCcHHHHHHHHHHHHHHHH-cCCh
Q 015351 205 YN--EVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERA---VEKLADDEEAEQLFVAFAEFEER-CKET 278 (408)
Q Consensus 205 ~~--~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~~~~~~~~~~~-~~~~ 278 (408)
.+ ....-..+|+.+++..|.............+. ...+.++++-. +...| ...+|..++.++.+ .+++
T Consensus 355 ~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~--~~~~~~Lle~i~~~l~~~~----s~~iwle~~~~~l~~~~~~ 428 (547)
T PF14929_consen 355 FDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK--DYSAEQLLEMIALHLDLVP----SHPIWLEFVSCFLKNPSRF 428 (547)
T ss_pred hCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhhcCC----CchHHHHHHHHHHhccccc
Confidence 45 56677888999999988766554444443333 44555555522 33333 47899999999887 5666
Q ss_pred HHHHHHHHHHH
Q 015351 279 ERARCIYKFAL 289 (408)
Q Consensus 279 ~~A~~~~~~al 289 (408)
+.-.+....++
T Consensus 429 ~~~~e~~~~~l 439 (547)
T PF14929_consen 429 EDKEEDHKSAL 439 (547)
T ss_pred cccHHHHHHHH
Confidence 54455555554
No 415
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=80.43 E-value=4.2 Score=21.75 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=14.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 015351 94 WIKYAKWEESQKDFNRARSVWERAL 118 (408)
Q Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al 118 (408)
|..+...+.+.|++++|..+|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555666666666666666554
No 416
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=80.22 E-value=39 Score=29.43 Aligned_cols=224 Identities=12% Similarity=0.098 Sum_probs=116.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCC----ChHHHHHHHHH--HHhcc-CH---HHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYR----NHTLWLKYAEV--EMKNK-FI---NHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~--~~~~~-~~---~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
++.++..+++++-...+++......+ ... +...... ..... .. ......++.-++.+|++..+|...|.
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45566778888888888888743322 222 1111111 11111 11 24677888888999999999988887
Q ss_pred HHHHcCChHHHHHHHHHHHHhC-----C--CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcC
Q 015351 168 MEEMLGNVAGARQIFERWMHWM-----P--DQQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMG 239 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-----p--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~ 239 (408)
++... |-..- . +..-|..... -.+.|...+.+++..+|. ...+..+..+-...|
T Consensus 86 ~~~~~------------Aw~~RG~~~A~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 86 YWVHR------------AWDIRGSGYASTVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHH------------HHHHHccchhcccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 76442 21111 1 1334433322 346788999999999985 344566666666667
Q ss_pred CHHHHHHHHHHHHH-HcCCc--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchh
Q 015351 240 EVDRARNVYERAVE-KLADD--EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREG 316 (408)
Q Consensus 240 ~~~~A~~~~~~al~-~~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~ 316 (408)
.++--..++...-- ..|.. ..++.+|-.....+.+.|-..-+.- -...|. ..-.... . .
T Consensus 148 eP~WL~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-----p~~lP~-----~L~~~~~--~-~----- 209 (277)
T PF13226_consen 148 EPDWLAALFAGQPAESRPLAHAEYDPEVWQAAAALLARYGLNPLAEL-----PQALPA-----SLPARTE--D-E----- 209 (277)
T ss_pred CchHHHHHHCCCCCCcchHHHhhcchhhHHHHHHHHHHcCCCccccC-----cccCcc-----cccchhh--h-h-----
Confidence 77655555432100 00000 0024444444444444443110000 001111 1111000 1 1
Q ss_pred HHHHHHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 015351 317 IEDAIVGKRR-FQYEDEVRKNPMNYDIWFDYIRLEES--VGNKERAREVY 363 (408)
Q Consensus 317 ~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~--~g~~~~A~~~~ 363 (408)
.+... -.+..++...|.+..+...++.++.= -|.+++...+.
T Consensus 210 -----~~~~~~YWl~~~l~~~p~~~~~~~~y~~yl~PRWGgs~e~i~~~~ 254 (277)
T PF13226_consen 210 -----LEDPLDYWLRHALAIRPGDFEALEAYIYYLYPRWGGSHEEIDAFI 254 (277)
T ss_pred -----ccchHHHHHHHHHHhCcchHHHHHHHHHHhCCccCCCHHHHHHHh
Confidence 11233 45678899999999988888887632 35555555443
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.16 E-value=18 Score=31.00 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHP-------KVSTWIKYAKFEMKMGEVDRARNVYER 250 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 250 (408)
..+-..+|..+...|++++|.++|+.+..... ...+...+..+....|+.+....+.-+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34445566677777777777777777754432 134455666666777777666655443
No 418
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=79.44 E-value=5.5 Score=21.31 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERAL 118 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al 118 (408)
.|..+...+.+.|+++.|..+|+...
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555555544
No 419
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=79.23 E-value=47 Score=29.70 Aligned_cols=171 Identities=10% Similarity=0.050 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC----cHHHHHH
Q 015351 196 LSYIKFELRYNEVERARQIYERFVQCHP---K----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD----DEEAEQL 264 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~ 264 (408)
..++.+|...++|.+|+......+.... + .++.+.=...|....+..+|...+..|-..... +.....+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 4567778888889988888777665321 1 345555677778888888888888776554211 0111222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC-cchHHHH--HHH-HHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCH
Q 015351 265 FVAFAEFEERCKETERARCIYKFALDHIPK-GRAEDLY--RKF-VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNY 340 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 340 (408)
=+.-|.++....+|..|..+|=+|++.... +..+... ..| +-+-.-.+..+++. +.-.-..+++....+.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~------~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVA------ALLSAKLALKYAGRDI 285 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHH------HHHhhHHHHhccCcch
Confidence 233344444557899999999988875432 1111211 111 11222234433322 2222233444455566
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCC
Q 015351 341 DIWFDYIRLEES--VGNKERAREVYERAIANVPP 372 (408)
Q Consensus 341 ~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~p~ 372 (408)
++....+..+.+ ..+++.|..-|..-+..+|-
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 666666666543 34667777777766665553
No 420
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=78.76 E-value=5 Score=21.42 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 342 IWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 342 ~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
.|..+...+.+.|++++|.++|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4778888999999999999999997753
No 421
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=78.23 E-value=7.4 Score=22.56 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 015351 328 QYEDEVRKNPMNYDIWFDYIRLEESVGNKERA 359 (408)
Q Consensus 328 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A 359 (408)
.|.+++-.+|++...++.|+.++...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 47788999999999999999999999998654
No 422
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.95 E-value=83 Score=31.87 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=23.0
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH
Q 015351 271 FEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310 (408)
Q Consensus 271 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 310 (408)
++...+++++|..+++. .|.+........|+..+..
T Consensus 499 lle~~~ny~eAl~yi~s----lp~~e~l~~l~kyGk~Ll~ 534 (933)
T KOG2114|consen 499 LLEDLHNYEEALRYISS----LPISELLRTLNKYGKILLE 534 (933)
T ss_pred HHHHhcCHHHHHHHHhc----CCHHHHHHHHHHHHHHHHh
Confidence 34467889999888774 5655444555566665553
No 423
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.87 E-value=25 Score=30.19 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcC
Q 015351 207 EVERARQIYERFVQCHPK-------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD---DEEAEQLFVAFAEFEERCK 276 (408)
Q Consensus 207 ~~~~A~~~~~~al~~~p~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~ 276 (408)
.-...+.+++++...... ..+...+|..|...|++++|.++|+.+...... ......+...+..+....|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 344556666666655431 234567788888888888888888888655432 1123455555666666677
Q ss_pred ChHHHHHHHHH
Q 015351 277 ETERARCIYKF 287 (408)
Q Consensus 277 ~~~~A~~~~~~ 287 (408)
+.+....+.-+
T Consensus 233 ~~~~~l~~~le 243 (247)
T PF11817_consen 233 DVEDYLTTSLE 243 (247)
T ss_pred CHHHHHHHHHH
Confidence 77666555433
No 424
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.07 E-value=50 Score=28.83 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC----ChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHP----KVSTW---IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQL 264 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 264 (408)
.++|.+++..|.+.++.+.+.+.+.+.++..- ..+++ ..+|.+|-...-.++.++.....++...+-..--..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44555555555555555555555554444321 12222 223333333333344444444444444431111122
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 015351 265 FVAFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
-...|.+.+...++.+|-.++...+.
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 22234444444555555555555544
No 425
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.46 E-value=1.1e+02 Score=32.45 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=8.2
Q ss_pred HHHHHHcCChHHHHHHH
Q 015351 166 IHMEEMLGNVAGARQIF 182 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~ 182 (408)
..+-.+.|-++.|..+|
T Consensus 915 ~n~I~kh~Ly~~aL~ly 931 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY 931 (1265)
T ss_pred HHHHHhcccchhhhhee
Confidence 33344455555555444
No 426
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.43 E-value=63 Score=29.70 Aligned_cols=129 Identities=15% Similarity=0.064 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHc------------cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc--C
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQ------------KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK--F 140 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~ 140 (408)
.+...=.+.+..+|....+|.---.++... .-+++-+.+...+++.+|++..+|.....++.+.+ +
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 366666778888999888886543333221 23455677788889999999999999999988776 4
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 015351 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEML----GNVAGARQIFERWMHWMPD-QQGWLSYIKFEL 203 (408)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 203 (408)
+..=.++.+++++.+|.+-..|...=-+.... +...+=+++..+++..++. -.+|..-..++.
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 67788899999999999888876443333222 2245556777888887776 777776655554
No 427
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=76.05 E-value=15 Score=32.74 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--hHHHHHHHHHHH
Q 015351 175 VAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPK--VSTWIKYAKFEM 236 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~a~~~~ 236 (408)
.++...++...++.-|+ ...|..++.++...|.++..+.+|++|+..... .++...+..++.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35677788888888887 788999999999999999999999999987643 455555555544
No 428
>PRK12798 chemotaxis protein; Reviewed
Probab=75.91 E-value=66 Score=29.71 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=123.7
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCchHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYR-NHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYK 164 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~ 164 (408)
+|.|+.+-. -+.++-|++.-...++.+ ++. +.+.-+..|-.-.-.|+..++...+...-.. .|...-.+..
T Consensus 80 dprNv~Aa~---iy~lSGGnP~vlr~L~~~----d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~la 152 (421)
T PRK12798 80 DPRNVDAAL---IYLLSGGNPATLRKLLAR----DKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLA 152 (421)
T ss_pred CccchhHHH---hhHhcCCCHHHHHHHHHc----CCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHH
Confidence 455554432 223456777655544443 332 3444555566667788888888887665433 2333344444
Q ss_pred HHHH-HHHcCChHHHHHHHHHHHHhCCC---HHH-HHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHHHH
Q 015351 165 YIHM-EEMLGNVAGARQIFERWMHWMPD---QQG-WLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAKFE 235 (408)
Q Consensus 165 ~~~~-~~~~~~~~~A~~~~~~al~~~p~---~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~~~ 235 (408)
++.. .....+...|+..|..+--..|. .+. ...-..+....|+.++...+-.+.+..+.+ .+.+-.++...
T Consensus 153 Lv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~ 232 (421)
T PRK12798 153 LVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLV 232 (421)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 4433 33456788899999988888887 333 333345556778888888888887777753 24455555555
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 015351 236 MKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP 293 (408)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 293 (408)
...++-. -...+...+...+. +....+|+.+++--...|+.+-|...-++++...+
T Consensus 233 ~~~~d~~-~~~~l~~~ls~~d~-~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~ 288 (421)
T PRK12798 233 VRLDDEI-RDARLVEILSFMDP-ERQRELYLRIARAALIDGKTELARFASERALKLAD 288 (421)
T ss_pred Hhccccc-cHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcc
Confidence 5544322 22336666665433 22577888889988899999999999999887653
No 429
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=75.23 E-value=19 Score=23.12 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 346 YIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 346 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
.+.-+...|++-+|-++++..-...|.. ...+++.+|++..++-++ +.|+...|+.++
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~---~~gn~~gA~~l~ 62 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHL---RRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHH---HCTSHHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHH---HhCCHHHHHHhC
Confidence 3445567899999999999998766655 567999999998887664 579999998764
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.90 E-value=70 Score=29.52 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=41.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCChH--HHHHHHH--HHHhccCHHHHHHHHHHHHHh
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDYRNHT--LWLKYAE--VEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~a~--~~~~~~~~~~A~~~~~~al~~ 154 (408)
..+.-.+..++|..|..+++.+...-|.+.. .+..++. .+...-++.+|...++..+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455567889999999999999985444443 3333333 344566899999999998775
No 431
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.74 E-value=59 Score=28.13 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHH--HHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC
Q 015351 260 EAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRK--FVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 337 (408)
.++.++..+|..+.+.|++.+|+.+|-.+ ++ ...... +.... ...-.|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~--~~~~~~~~ll~~~-----------------------~~~~~~ 137 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TD--PSAFAYVMLLEEW-----------------------STKGYP 137 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------H--HHHHHHHHHHHHH-----------------------HHHTSS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CC--hhHHHHHHHHHHH-----------------------HHhcCC
Confidence 36899999999999999999999888642 22 111111 11111 122345
Q ss_pred CCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc
Q 015351 338 MNYDIWFDYIRL-EESVGNKERAREVYERAIAN 369 (408)
Q Consensus 338 ~~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~ 369 (408)
...+.+...+.+ |.-.|+...|...+..-++.
T Consensus 138 ~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 138 SEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555666655544 56678888888877666654
No 432
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=73.66 E-value=10 Score=20.14 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=14.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
|..+...+.+.|+++.|..+|+...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555555555555555543
No 433
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=73.63 E-value=34 Score=25.37 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=52.9
Q ss_pred HcCChHHHHHHHHHHHhh---CCCcc-------hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 015351 274 RCKETERARCIYKFALDH---IPKGR-------AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIW 343 (408)
Q Consensus 274 ~~~~~~~A~~~~~~al~~---~p~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 343 (408)
..|-+++|..-+++++.. .|... ....+..+.......|.+++.... .++|+.+|.+-=+++.+....|
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~s-A~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQS-ADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHH-HHHHHHHHHHH--TTSTHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHH-HHHHHHHHhhccccccccchhH
Confidence 345666666666666642 23211 011223333344455665443332 4456666666666677777776
Q ss_pred HH----HHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 344 FD----YIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 344 ~~----~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
+. .+..+...|..++|...|+.+.+.
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 64 566788899999999999998764
No 434
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=73.43 E-value=40 Score=29.36 Aligned_cols=89 Identities=9% Similarity=0.044 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 109 RARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
.....++.-++..|++...|+..|.++....=-- |.-.. +-....-|.....+ .+.|...+.+|+.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~-------RG~~~A~~V~~~~W~~~~~~------~d~A~~~ll~A~~ 127 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDI-------RGSGYASTVTEAQWLGAHQA------CDQAVAALLKAIE 127 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH-------HccchhcccCHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 3566777778889999988888888765542000 00000 01112333333222 2446666666666
Q ss_pred hCCC-HHHHHHHHHHHHHhhhHHH
Q 015351 188 WMPD-QQGWLSYIKFELRYNEVER 210 (408)
Q Consensus 188 ~~p~-~~~~~~~~~~~~~~~~~~~ 210 (408)
++|. ..++..+..+-...|..+=
T Consensus 128 l~pr~~~A~~~m~~~s~~fgeP~W 151 (277)
T PF13226_consen 128 LSPRPVAAAIGMINISAYFGEPDW 151 (277)
T ss_pred cCCCchHHHHHHHHHHhhcCCchH
Confidence 6666 4444444444444454443
No 435
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.95 E-value=64 Score=28.15 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHccCHHHHHHHHHH---HHhc--cCCChHHHHHHHHHH-H
Q 015351 71 DYRLRKRKEFEDLIRRVR--------WNTGVWIKYAKWEESQKDFNRARSVWER---ALEV--DYRNHTLWLKYAEVE-M 136 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~--~p~~~~~~~~~a~~~-~ 136 (408)
+++++|+..|.+.+.... ........++.+|...|++..-...... +... -|....+...+.... .
T Consensus 17 ~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~ 96 (421)
T COG5159 17 NDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPY 96 (421)
T ss_pred hhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCC
Confidence 445778888888876521 1223567778888888776543322211 1110 111111211111111 1
Q ss_pred hccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCChHHHHHHHHHHHH----hCC--C-HHHHHHHHHHHH
Q 015351 137 KNKFINHARNVWDRAVTLLPRV------DQLWYKYIHMEEMLGNVAGARQIFERWMH----WMP--D-QQGWLSYIKFEL 203 (408)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p--~-~~~~~~~~~~~~ 203 (408)
...+++.-+.+....++-.... ..+-..++.++.+.|.+.+|+......+. .+. + ..++..=..++.
T Consensus 97 ~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh 176 (421)
T COG5159 97 SSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYH 176 (421)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHH
Confidence 1123333333333333321110 12334566777788888888776655443 221 2 344444445566
Q ss_pred HhhhHHHHHHHHHHHHHh-----CC-C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 204 RYNEVERARQIYERFVQC-----HP-K--VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 204 ~~~~~~~A~~~~~~al~~-----~p-~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
...+..++..-+..+... +| . .++-+.-|.++....++.-|..+|-++++.+..
T Consensus 177 ~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 177 EIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred HHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 666666666555554432 22 1 122233344455667888888888888876543
No 436
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.45 E-value=7.7 Score=26.02 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHh
Q 015351 205 YNEVERARQIYERFVQC 221 (408)
Q Consensus 205 ~~~~~~A~~~~~~al~~ 221 (408)
.|++++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45666666666666654
No 437
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.29 E-value=1.2e+02 Score=30.89 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=29.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 234 FEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 234 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
++.+..-++-|+.+-+. ..-+......++..||..+...|++++|...|-+.+..
T Consensus 343 iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34444455555544332 11122224556666666666777777776666666653
No 438
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=71.87 E-value=88 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=22.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 346 YIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 346 ~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
-|.-+.+.|+...|..+|.+|+.....
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 446678899999999999999986543
No 439
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.75 E-value=17 Score=27.93 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=17.2
Q ss_pred HHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 135 EMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
....|++.-|..+...++..+|++..+....+..+.+.|
T Consensus 80 ~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 80 ALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 334444445555555555555554444444444444443
No 440
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.67 E-value=1.4e+02 Score=31.24 Aligned_cols=85 Identities=13% Similarity=-0.053 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc-----cCHHHHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKN-----KFINHARN 146 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~ 146 (408)
...+|...|+.. ...|.-+--++.-|-+|..+|++++=+++|.-|++..|++|.+-...-.+..+. .+...|..
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV 612 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777764 446777788899999999999999999999999999999885543333222221 23344444
Q ss_pred HHHHHHHhCCC
Q 015351 147 VWDRAVTLLPR 157 (408)
Q Consensus 147 ~~~~al~~~p~ 157 (408)
..--++...|.
T Consensus 613 ~~~~~~~~~~~ 623 (932)
T PRK13184 613 FMLLALWIAPE 623 (932)
T ss_pred HHHHHHHhCcc
Confidence 44455555554
No 441
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=69.72 E-value=93 Score=28.68 Aligned_cols=125 Identities=8% Similarity=-0.029 Sum_probs=83.1
Q ss_pred HHHHccCHHHHHHHHHHHHhcc---------CCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--C----CchHHHHH
Q 015351 100 WEESQKDFNRARSVWERALEVD---------YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--P----RVDQLWYK 164 (408)
Q Consensus 100 ~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p----~~~~~~~~ 164 (408)
+...+.++.+|.++-+..+... --...+|+.+...+...|+...-...+...+... . ....+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 3445688888888877766321 1124667777777777888777666666555442 1 12234556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMP--D---QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p--~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
+.+.|...+.++.|..+..+..--.. + ....+.+|.+-.-++++..|.++|-+++...|+
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 66778888888888887776642111 1 344455567777788999999999999999885
No 442
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.65 E-value=93 Score=28.67 Aligned_cols=60 Identities=8% Similarity=-0.022 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 161 LWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 161 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
++..++..|...|+.+.|...|.|+-..+.+ ..+|.++..+-.-.|++.....+-.++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4455566666666666666666665544443 44555555555555555555444444443
No 443
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.59 E-value=93 Score=28.66 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 015351 281 ARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFD 345 (408)
Q Consensus 281 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 345 (408)
-+.+...+++.+|++ -.+|.....+..+.+..+ +..-..+.+++++.+|.|...|..
T Consensus 94 eL~~~~~~L~~npks--Y~aW~hR~w~L~~~p~~~------~~~EL~lcek~L~~D~RNfh~W~Y 150 (421)
T KOG0529|consen 94 ELKYVESALKVNPKS--YGAWHHRKWVLQKNPHSD------WNTELQLCEKALKQDPRNFHAWHY 150 (421)
T ss_pred HHHHHHHHHHhCchh--HHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCcccccchHH
Confidence 334444455555554 345555555554444332 333445555555555555555544
No 444
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.57 E-value=36 Score=33.82 Aligned_cols=167 Identities=10% Similarity=0.019 Sum_probs=101.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC------hHHHHHHHHHHHh---ccCHHHHHHHHHHHHHhC-CCch
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN------HTLWLKYAEVEMK---NKFINHARNVWDRAVTLL-PRVD 159 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~-p~~~ 159 (408)
+++.-..+...|....+|+.-+++.+.+-. -|+. ..+.+.|+-.+.+ -|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 445556666667777888888887776543 4532 2233334433333 368889999888888875 4567
Q ss_pred HHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhC------C
Q 015351 160 QLWYKYIHMEEML---------GNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNE-VERARQIYERFVQCH------P 223 (408)
Q Consensus 160 ~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~------p 223 (408)
..++..|++|... +..+.|.+-|+++++..|....-.+++-++...|. ++...++=.-.++.+ .
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG 358 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKG 358 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccc
Confidence 7888888887653 45677999999999999985555666666655553 333333322222222 1
Q ss_pred Ch---HHHHHHHHHH---HHcCCHHHHHHHHHHHHHHcCC
Q 015351 224 KV---STWIKYAKFE---MKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 224 ~~---~~~~~~a~~~---~~~~~~~~A~~~~~~al~~~p~ 257 (408)
.. .-|...|.++ .-.+++.+|...-+...+..|.
T Consensus 359 ~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 359 ALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 11 1121222221 2346777888777777777554
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.68 E-value=1e+02 Score=28.68 Aligned_cols=128 Identities=10% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH-------HHhCCC--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChH-HH-HH
Q 015351 162 WYKYIHMEEMLGNVAGARQIFERW-------MHWMPD--QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS-TW-IK 230 (408)
Q Consensus 162 ~~~~~~~~~~~~~~~~A~~~~~~a-------l~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~-~~ 230 (408)
...+.+++.-.|++..|+++++-. +...|. ...++..|-.|.-.+++.+|++.|...+-.-.... .+ ..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 344556677788888888776532 222233 55677777888888888888888888765321111 00 00
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHH--HHcCChHHHHHHHHHHH
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKLAD---DEEAEQLFVAFAEFE--ERCKETERARCIYKFAL 289 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~al 289 (408)
-...-.-.+..++...++.-++...|. +.....+.-.++.-. +..|+.+.-.++|..+.
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFAC 268 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhC
Confidence 000011123344444455555555553 111223333344433 24567766777777665
No 446
>PRK12798 chemotaxis protein; Reviewed
Probab=66.48 E-value=1.1e+02 Score=28.35 Aligned_cols=230 Identities=13% Similarity=0.058 Sum_probs=138.7
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR-VDQLWYKYIHMEEMLGNVAGARQIFERWMHW--MPDQQGWL 196 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 196 (408)
.+|.|..+-. .+.+.-|++..... .+..++. +.+.-..-|-+-.-.|+..++...+...-.. .+....++
T Consensus 79 ~dprNv~Aa~---iy~lSGGnP~vlr~----L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~l 151 (421)
T PRK12798 79 DDPRNVDAAL---IYLLSGGNPATLRK----LLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYL 151 (421)
T ss_pred CCccchhHHH---hhHhcCCCHHHHHH----HHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHH
Confidence 3566654432 22345567764443 3444332 2344444455556689999998888765322 12233333
Q ss_pred HHHH-HHHHhhhHHHHHHHHHHHHHhCCC---hH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 015351 197 SYIK-FELRYNEVERARQIYERFVQCHPK---VS-TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271 (408)
Q Consensus 197 ~~~~-~~~~~~~~~~A~~~~~~al~~~p~---~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 271 (408)
.++. ......+...|++.|+.+.-..|. .+ +...-..+..+.|+.+++..+-.+-+..+..++-...++-.++..
T Consensus 152 aLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~ 231 (421)
T PRK12798 152 ALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDL 231 (421)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 3332 223346789999999999988884 23 344444555789999999999999888888865566777766666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC----CHHHHHHHH
Q 015351 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM----NYDIWFDYI 347 (408)
Q Consensus 272 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~ 347 (408)
..+.++-.+ ...+...+...+......+|...+.--...|+ .+.|...-++++.+... ...+.+..+
T Consensus 232 ~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk--------~~lA~~As~~A~~L~~~~~~~~~ra~LY~a 302 (421)
T PRK12798 232 VVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAALIDGK--------TELARFASERALKLADPDSADAARARLYRG 302 (421)
T ss_pred HHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHhccCCCcchHHHHHHHH
Confidence 666553332 24466777765555457788888888888888 44577777777776532 122222222
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 015351 348 RLEESVGNKERAREVYER 365 (408)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~ 365 (408)
....-..+.+++.+.+..
T Consensus 303 aa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 303 AALVASDDAESALEELSQ 320 (421)
T ss_pred HHccCcccHHHHHHHHhc
Confidence 222334556666665544
No 447
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.26 E-value=97 Score=27.63 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCC
Q 015351 261 AEQLFVAFAEFEERCKETERARCIYKFALDHI-PKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN 339 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 339 (408)
..++|.+.+.+|.+.|+.+.|.+.+.+..... ......++....+.+-.-.++.+-+.+. .++|..++++.=..+..|
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~-iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES-IEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH-HHHHHHHHHhCCChhhhh
Confidence 57788888888888888888888888776532 1111244555555554445555444333 566666666644333322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 340 YDIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 340 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
..-...|.......++.+|-.+|-.++....+
T Consensus 182 -RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 182 -RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred -hHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 12222344445567888888888887766544
No 448
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.30 E-value=33 Score=26.39 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK 139 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 139 (408)
..+..+..++-....|++.-|..+.+.++..+|++..+....+..+.+.|
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 34666777778888889999999999998889988888888888777666
No 449
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.09 E-value=1.5e+02 Score=29.28 Aligned_cols=94 Identities=10% Similarity=0.020 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH-HHHHH
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD------QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQ-GWLSY 198 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~ 198 (408)
-+|..-+. ..+..+|..+++.|...+...|.+. .....+.-+|....+.+.|.++++.|-+.+|... .-...
T Consensus 356 iLWn~A~~-~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKK-LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34544333 3445566666666666666655432 3445556666666677777777777766666521 11222
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 015351 199 IKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~ 220 (408)
.......|.-++|+.+......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHh
Confidence 2333334555666666555444
No 450
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=64.48 E-value=1.8e+02 Score=30.16 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q 015351 209 ERARQIYERFVQCH--PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET 278 (408)
Q Consensus 209 ~~A~~~~~~al~~~--p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 278 (408)
+.-.+.|.+.++-. .+...|..-..-+..+|++..+.+++.++++...... ..+.|..++.++...|--
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~-t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESA-TKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHhCch
Confidence 34445555555432 2445555555555667778888888888887554322 355666677776666643
No 451
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=64.35 E-value=38 Score=32.94 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
++...+.-+.....+....+.-++.+-.-|..+.|-.+|++.+..+|+ +.+..++.-+.+.|-...|..+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 27 AVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 444444333333333344445566666667778888888888888777 567777887778777777777766
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.29 E-value=1.2e+02 Score=27.99 Aligned_cols=161 Identities=12% Similarity=0.112 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------cHHHH
Q 015351 193 QGWLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD------DEEAE 262 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~ 262 (408)
.....++..|...|+++.|++.|.++...+.+ ..+|+++..+-...|+|.....+-.++... |+ ....+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHHhcCc
Confidence 45677889999999999999999998887764 456888888888889988877777776654 21 00113
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q 015351 263 QLFVAFAEFEERCKETERARCIYKFALDHI--------PKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 334 (408)
.+...-|......+++..|...|-.+.... |.+ +.+|..+..+. ..+..+-...+ ..-..|...++
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsd--v~iYggLcALA-tfdr~~Lk~~v---i~n~~Fk~fle 303 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSD--VAIYGGLCALA-TFDRQDLKLNV---IKNESFKLFLE 303 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchh--hHHHHhhHhhc-cCCHHHHHHHH---HcchhhhhHHh
Confidence 455555666666778888888887664321 222 33333332221 12211110011 12244666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 335 KNPMNYDIWFDYIRLEESVGNKERAREVYER 365 (408)
Q Consensus 335 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 365 (408)
..| .+|-.++.+|. +++....+++.+
T Consensus 304 l~P---qlr~il~~fy~--sky~~cl~~L~~ 329 (466)
T KOG0686|consen 304 LEP---QLREILFKFYS--SKYASCLELLRE 329 (466)
T ss_pred cCh---HHHHHHHHHhh--hhHHHHHHHHHH
Confidence 655 56666666654 455665555554
No 453
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.10 E-value=18 Score=24.32 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=9.2
Q ss_pred ccCHHHHHHHHHHHHHh
Q 015351 138 NKFINHARNVWDRAVTL 154 (408)
Q Consensus 138 ~~~~~~A~~~~~~al~~ 154 (408)
.|++++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34555555555555543
No 454
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.63 E-value=31 Score=34.93 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
+..|+++.|.+...+. ++++.|..+|...+.+|+.+-|..+|++.-.
T Consensus 654 Le~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 4456777776665543 6678888888888888888888888877543
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.80 E-value=81 Score=25.53 Aligned_cols=66 Identities=18% Similarity=0.085 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhccCCCh--------HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 107 FNRARSVWERALEVDYRNH--------TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
.+.|+.+++..-+..|... -+-....-++.+.|.+++|.+++++... +|++......+..+-...+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccc
Confidence 4556777766655444321 1222334467778888888888888777 6666655555555544433
No 456
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.26 E-value=81 Score=27.41 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHc--cCHHHHHHHHHHHHhccCCChHHHHHHHHHH------HhccCHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQ--KDFNRARSVWERALEVDYRNHTLWLKYAEVE------MKNKFINHAR 145 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~------~~~~~~~~A~ 145 (408)
++-......+++.+|.+-..|.-.-.+.... .++..=..+.++.++.+|.|...|.-.-.++ ........-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 3445556666666777666666544443332 3455555666666666666666654332222 1112222223
Q ss_pred HHHHHHHHhCCCchHHHHHH
Q 015351 146 NVWDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~~ 165 (408)
+.-..++..++.+..+|...
T Consensus 171 eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HhHHHHHhhCCCChHHHHHH
Confidence 33334445556666666544
No 457
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=60.89 E-value=18 Score=30.47 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHhCCCh
Q 015351 206 NEVERARQIYERFVQCHPKV 225 (408)
Q Consensus 206 ~~~~~A~~~~~~al~~~p~~ 225 (408)
++...|..++++++..+|..
T Consensus 192 ~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred ccHHHHHHHHHHHHHhCCCC
Confidence 45566777777777777653
No 458
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=60.43 E-value=58 Score=31.73 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=61.3
Q ss_pred ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 104 QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFE 183 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 183 (408)
...++.++...+.-+.....+....+.-+.+.-..+..+.|-.+|++.+..+|+ +.+..+++-+...|-...|..+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 345666666666655544455556666677777888999999999999999998 788889999999999888888887
No 459
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.05 E-value=3.9e+02 Score=32.53 Aligned_cols=292 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHH
Q 015351 66 STELADYRLRKRKEFEDLIRRVRW-NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHA 144 (408)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A 144 (408)
..+.+...+++...--+-....|. .......+......--...+|..+|......+ ....-.+.++....
T Consensus 2606 ~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n---------~~n~~~~~~d~Ksi 2676 (3550)
T KOG0889|consen 2606 VGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGN---------VQNLDNKAQDIKSI 2676 (3550)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhccccc---------ccccchhHHHHHHH
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHH-------------HHHhCCC-HHHHHHHHHHHHHhhhHHH
Q 015351 145 RNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFER-------------WMHWMPD-QQGWLSYIKFELRYNEVER 210 (408)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------al~~~p~-~~~~~~~~~~~~~~~~~~~ 210 (408)
.+.++.=+-..-++...|..+.. .++.-+.--...|.- +...... ..+-..+|.+...+|-++.
T Consensus 2677 l~~Wr~RlP~~~Dd~~~Wsdl~~--WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~v 2754 (3550)
T KOG0889|consen 2677 LQTWRDRLPNVWDDMNQWSDLIT--WRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDV 2754 (3550)
T ss_pred HHHHhhcCCCcchhHHHHHHHHH--HHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHH
Q ss_pred HHHHHHHHHHhCCChHHHHHH------HHHHHHcC-CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 015351 211 ARQIYERFVQCHPKVSTWIKY------AKFEMKMG-EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARC 283 (408)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~------a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 283 (408)
++..+.+.... |+.++--.+ +.++.+.. ....+.++.+..--.+=.+....+++..-|.+..+.|+.++|-.
T Consensus 2755 cl~~L~~iytl-p~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~ 2833 (3550)
T KOG0889|consen 2755 CLNQLAKIYTL-PNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANK 2833 (3550)
T ss_pred HHHHHHHHhcc-CcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHH
Q ss_pred HHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH-H
Q 015351 284 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN-PMNYDIWFDYIRLEESVGNKERAR-E 361 (408)
Q Consensus 284 ~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~-~ 361 (408)
.|..|++.+..- ...|..|+.+....-+.+...-..-..|...|=+|.... .....-++....++....+-.... +
T Consensus 2834 ~fs~AvQi~~~l--~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iakvLwLls~dda~~~l~~ 2911 (3550)
T KOG0889|consen 2834 AFSAAVQIDDGL--GKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAKVLWLLSFDDSLGTLGD 2911 (3550)
T ss_pred HHHHHHHHHhhh--HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhccccchHHH
Q ss_pred HHHHHHhcCC
Q 015351 362 VYERAIANVP 371 (408)
Q Consensus 362 ~~~~al~~~p 371 (408)
++++-+...|
T Consensus 2912 ~~~k~l~~ip 2921 (3550)
T KOG0889|consen 2912 VFDKFLGEIP 2921 (3550)
T ss_pred HHHHhhccCC
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.79 E-value=1.3e+02 Score=26.46 Aligned_cols=100 Identities=10% Similarity=-0.012 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC----HHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLP---RVDQLWYKYIHMEEMLGN---VAGARQIFERWMHWMPD----QQG 194 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~----~~~ 194 (408)
.++|..+|..|.+.++.+.+.+...+.++..- -...+.+..+++-.--|+ .++.++.....++...+ ...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 57888888888888888887777666655421 113333333333333333 34444444455555444 222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 195 WLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
-..+|.+.....++.+|..++-..+..+.+
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 233455555566788888888777776654
No 461
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=58.31 E-value=3.3 Score=40.06 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHcCChHHHHHHHHHHH--HhCCC--HHHHHHHHHHHHHhhhHHHHHHHHH
Q 015351 166 IHMEEMLGNVAGARQIFERWM--HWMPD--QQGWLSYIKFELRYNEVERARQIYE 216 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al--~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~ 216 (408)
++.+...|++..|..++.+.- .+.|. ....+..+.+....|+.+.|+..+.
T Consensus 31 a~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 31 ARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 344444555555555444433 12222 2222223344444444444444443
No 462
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.47 E-value=1e+02 Score=24.98 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCCh--------HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHH
Q 015351 74 LRKRKEFEDLIRRVRWNT--------GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFIN 142 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~ 142 (408)
+.|..+++..-+..|... -+-....-++.+.|.+++|.+++++... +|++......+..+-.+.+.+.
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 347777766544444321 1223345577889999999999999998 8888777666666655554333
No 463
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=57.35 E-value=51 Score=24.85 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=23.3
Q ss_pred ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh
Q 015351 104 QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK 137 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 137 (408)
.-+.+.|..+|+.+++.+|++..++..+....-.
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 3456788888888888888888888777765433
No 464
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=56.37 E-value=1.1e+02 Score=24.89 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHH-ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHhCCCchHHHH
Q 015351 90 NTGVWIKYAKWEES-QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK-----NKFINHARNVWDRAVTLLPRVDQLWY 163 (408)
Q Consensus 90 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (408)
.++.-..|++.... +.++++|.++|..-...+ ..+...+.+|..+.. .++...|++.|..+... +.+.+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHh
Confidence 34455555555543 456777777777654433 234445556554332 13567777777777664 3345555
Q ss_pred HHHHHHHHc-----C--ChHHHHHHHHHHHHhCCC
Q 015351 164 KYIHMEEML-----G--NVAGARQIFERWMHWMPD 191 (408)
Q Consensus 164 ~~~~~~~~~-----~--~~~~A~~~~~~al~~~p~ 191 (408)
.++.++..- + +.++|+..+.++......
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~ 144 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG 144 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc
Confidence 555444331 1 245666666666655433
No 465
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=56.27 E-value=1.5e+02 Score=26.41 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHH----HHhCCC-HHHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERW----MHWMPD-QQGWLSYI 199 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----l~~~p~-~~~~~~~~ 199 (408)
.+....|-..+ ..+++.+.++..++.+..+|---+.....+.+..+.|. +.+....... ++..|. ..
T Consensus 100 ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~------ 171 (301)
T TIGR03362 100 ADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLE------ 171 (301)
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhh------
Confidence 45555555554 66778889999999999988877788888888888884 4444444333 333342 11
Q ss_pred HHHHHhhh---HHHHHHHHHHHHHh-----------CC-ChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHH
Q 015351 200 KFELRYNE---VERARQIYERFVQC-----------HP-KVS--TWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAE 262 (408)
Q Consensus 200 ~~~~~~~~---~~~A~~~~~~al~~-----------~p-~~~--~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 262 (408)
+....|. -+..+..+...... .+ ..+ -...-+.-+...+..+.|+..++..+...+...+..
T Consensus 172 -L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf 250 (301)
T TIGR03362 172 -LKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERF 250 (301)
T ss_pred -cccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHH
Confidence 0011111 01222222221110 00 011 112225556778899999999998777666654456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 263 QLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
...+.+++++...|..+-|..+|+...+.
T Consensus 251 ~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 251 HWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66678899999999999999999987764
No 466
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.88 E-value=2.9e+02 Score=29.62 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcch-HHHHHHHH
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADD-EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA-EDLYRKFV 305 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~ 305 (408)
|....+++.+.+-.+.+.++-..|++..|++ +..+-+....-......|.+-+|...+ -.+|+... ......+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHH
Confidence 3444566677788888888888888887763 223334444444455566666655433 23565321 22333444
Q ss_pred HHHHHcCCchhHHHHH----HHHHHH-HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcC
Q 015351 306 AFEKQYGDREGIEDAI----VGKRRF-QYEDEVRKNPM-NYDIWFDYIRLEESVGNKERAR-EVYERAIANV 370 (408)
Q Consensus 306 ~~~~~~g~~~~~~~~~----~~~A~~-~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~-~~~~~al~~~ 370 (408)
-.....|....+.++. .++-.. +++.+-+..|. ....+..+-.++...+|+.+|- .+|+.+.+..
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 4455556544332221 222333 45555555554 3445556666777788877654 5677777653
No 467
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=55.49 E-value=1.6e+02 Score=26.56 Aligned_cols=256 Identities=9% Similarity=0.029 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHh--cCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHh---cc--CCChHHHHHHHHHHHhc
Q 015351 74 LRKRKEFEDLIRR--VRWN--------TGVWIKYAKWEESQKDFNRARSVWERALE---VD--YRNHTLWLKYAEVEMKN 138 (408)
Q Consensus 74 ~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~--p~~~~~~~~~a~~~~~~ 138 (408)
++++.+|.+.+.. .|.+ ......+++.+.+.|+.++-..+....-. .. |....+...+.......
T Consensus 21 ~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~ 100 (411)
T KOG1463|consen 21 EEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKI 100 (411)
T ss_pred hhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC
Confidence 4466666666653 2222 13567788888888887766555444321 11 11112222222222221
Q ss_pred -cCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCC---HHHHHHHHHHHHH
Q 015351 139 -KFINHARNVWDRAVTLLPRV------DQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPD---QQGWLSYIKFELR 204 (408)
Q Consensus 139 -~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~~~~~~~ 204 (408)
+....-+.+...+++-.... ..+-..++.+|...++|.+|+......++- +.. .++...=...+..
T Consensus 101 ~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~ 180 (411)
T KOG1463|consen 101 DDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHA 180 (411)
T ss_pred CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHH
Confidence 22333333333333321111 123446788899999999999887766542 221 4444444566677
Q ss_pred hhhHHHHHHHHHHHHHhC-----C-C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH---HHHHH
Q 015351 205 YNEVERARQIYERFVQCH-----P-K--VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAF---AEFEE 273 (408)
Q Consensus 205 ~~~~~~A~~~~~~al~~~-----p-~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~~~~~ 273 (408)
..+..+|...+..|-... | . ..+-+.-|-++....+|.-|..+|-++++-+..-.+...+...+ ..+-.
T Consensus 181 l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKI 260 (411)
T KOG1463|consen 181 LRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKI 260 (411)
T ss_pred HhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHH
Confidence 778888888887776542 2 1 12233445556666899999999999988764422122222221 22223
Q ss_pred HcCChHHHHHHHHH--HHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC
Q 015351 274 RCKETERARCIYKF--ALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337 (408)
Q Consensus 274 ~~~~~~~A~~~~~~--al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 337 (408)
..+..++...+... +++....+ .......+....+..- .. +.+|...|..-+..+|
T Consensus 261 Mln~~ddv~~lls~K~~l~y~g~~--i~AmkavAeA~~nRSL-kd-----F~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 261 MLNLPDDVAALLSAKLALKYAGRD--IDAMKAVAEAFGNRSL-KD-----FEKALADYKKELAEDP 318 (411)
T ss_pred HhcCHHHHHHHHhhHHHHhccCcc--hHHHHHHHHHhcCCcH-HH-----HHHHHHHhHHHHhcCh
Confidence 45666665555443 33322222 4444444444332111 11 5556666666665544
No 468
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=54.60 E-value=90 Score=23.48 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q 015351 223 PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274 (408)
Q Consensus 223 p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 274 (408)
|+..+....+..+...|++..|.++.....+.+| -+....+|..+-.....
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 4556677777777777888888888888877776 34456777766665543
No 469
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=54.55 E-value=1.9e+02 Score=27.24 Aligned_cols=127 Identities=9% Similarity=0.007 Sum_probs=70.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCChH-----HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDYRNHT-----LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
.-|-...+++++.+|.++|.+....--.++. +.....--..-.++.+.-...+...-+..|.++.+....+-...
T Consensus 11 ~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 11 FQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAY 90 (549)
T ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3455566677777777777777654333322 22222222222344554444444444556666666666666666
Q ss_pred HcCChHHHHHHHHHHHHhC----C-----C-----HHHHHHH--HHHHHHhhhHHHHHHHHHHHHHhC
Q 015351 171 MLGNVAGARQIFERWMHWM----P-----D-----QQGWLSY--IKFELRYNEVERARQIYERFVQCH 222 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~----p-----~-----~~~~~~~--~~~~~~~~~~~~A~~~~~~al~~~ 222 (408)
+.+.+.+|.+.+....... | + .+.|+.- +.++...|.+.+++.++++.+...
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 7777777777665544321 1 0 2233322 355667788888888887777653
No 470
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=53.56 E-value=43 Score=24.98 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=14.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 130 KYAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 130 ~~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
.+|..+...|++++|...|-+|+..+|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3444445555555555555555555554
No 471
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=52.24 E-value=1.3e+02 Score=24.49 Aligned_cols=46 Identities=11% Similarity=-0.064 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 015351 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESV----GNKERAREVYERAIAN 369 (408)
Q Consensus 322 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----g~~~~A~~~~~~al~~ 369 (408)
.++|...--+|.++ .++.+..++.++|..- ++.++|..+-.+|.++
T Consensus 184 Mdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 184 MDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 44566665566554 4566777777776531 3677788877777654
No 472
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.46 E-value=30 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHHH
Q 015351 205 YNEVERARQIYERFVQ 220 (408)
Q Consensus 205 ~~~~~~A~~~~~~al~ 220 (408)
.|++++|+.+|..+++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3455555555555443
No 473
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=50.80 E-value=25 Score=23.65 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=8.8
Q ss_pred cCHHHHHHHHHHHHh
Q 015351 105 KDFNRARSVWERALE 119 (408)
Q Consensus 105 g~~~~A~~~~~~al~ 119 (408)
|++++|..+|..++.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 566666666665553
No 474
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.60 E-value=75 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHh
Q 015351 356 KERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYE 393 (408)
Q Consensus 356 ~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~ 393 (408)
+.+|++.+.+++...|+++...+++.-+.=+...+...
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~L 66 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVL 66 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556667888887666665555555555544
No 475
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=49.95 E-value=29 Score=23.28 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHHH
Q 015351 206 NEVERARQIYERFV 219 (408)
Q Consensus 206 ~~~~~A~~~~~~al 219 (408)
|++++|..+|..++
T Consensus 20 g~y~eA~~lY~~al 33 (75)
T cd02684 20 GDAAAALSLYCSAL 33 (75)
T ss_pred ccHHHHHHHHHHHH
Confidence 34444444444443
No 476
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.77 E-value=2.8e+02 Score=27.69 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=20.2
Q ss_pred HHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 343 WFDYIRL--EESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 343 ~~~~~~~--~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
+..+..+ +...|++++|.+.+++ +...|.++.
T Consensus 506 Ll~L~~ff~~~~~g~~~~AL~~i~~-L~liP~~~~ 539 (613)
T PF04097_consen 506 LLDLAEFFDLYHAGQYEQALDIIEK-LDLIPLDPS 539 (613)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH-TT-S-S-HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCCHH
Confidence 3444444 3678999999999998 778887664
No 477
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=49.30 E-value=2e+02 Score=25.86 Aligned_cols=230 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC
Q 015351 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP 156 (408)
Q Consensus 77 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 156 (408)
...|.+.+..+|.....+..+.+-.-... +........+..+.-.....-.....+.+.-...+.++.....
T Consensus 71 ~s~f~~il~~~p~a~~l~~~~~r~~~~~~--------L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~ 142 (319)
T PF04840_consen 71 LSQFFKILNQNPVASNLYKKYCREQDREL--------LKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYS 142 (319)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHhccHHH--------HHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015351 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEM 236 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~ 236 (408)
.... ......+...+-+.-+-..-+++-....-.......-..-+...|+...|.++-+.. .-|+...|......+.
T Consensus 143 ~~k~-~~f~~~~~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F--kv~dkrfw~lki~aLa 219 (319)
T PF04840_consen 143 KSKN-DAFEAKLIEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF--KVPDKRFWWLKIKALA 219 (319)
T ss_pred hcch-hHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH------H
Q 015351 237 KMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEK------Q 310 (408)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------~ 310 (408)
..+++++-..+... .. +|.-|.-....+...|+..+|..+..+ .|+......|...+.+.. +
T Consensus 220 ~~~~w~eL~~fa~s-----kK---sPIGyepFv~~~~~~~~~~eA~~yI~k----~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 220 ENKDWDELEKFAKS-----KK---SPIGYEPFVEACLKYGNKKEASKYIPK----IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred hcCCHHHHHHHHhC-----CC---CCCChHHHHHHHHHCCCHHHHHHHHHh----CChHHHHHHHHHCCCHHHHHHHHHH
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhCCCCHH
Q 015351 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYD 341 (408)
Q Consensus 311 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 341 (408)
.++ ...+.......|.+..
T Consensus 288 ~kd------------~~~L~~i~~~~~~~~~ 306 (319)
T PF04840_consen 288 EKD------------IDLLKQILKRCPGNND 306 (319)
T ss_pred cCC------------HHHHHHHHHHCCCCCh
No 478
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=49.18 E-value=3.7e+02 Score=28.89 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 227 TWIKYAKFEMKMGEVDRARNVYER 250 (408)
Q Consensus 227 ~~~~~a~~~~~~~~~~~A~~~~~~ 250 (408)
++..+|..+.+.+.+++|.-.|++
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHH
Confidence 344444444444444444444443
No 479
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=48.56 E-value=2.8e+02 Score=28.75 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q 015351 198 YIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMG---EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 274 (408)
+...+...|++++|...+.+.- ..|+......++.++.... +..++....+++-...+..+.....+..++.+..+
T Consensus 713 LL~sy~~~g~~erA~glwnK~Q-V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q 791 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQ-VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQ 791 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCc-CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhh
Q ss_pred cCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHc
Q 015351 275 CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311 (408)
Q Consensus 275 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 311 (408)
....+.|.++|.+.-+..+... .+-+.....+....
T Consensus 792 ~~qkkaAkk~f~r~eeq~~v~t-ad~ls~f~k~L~~n 827 (1088)
T KOG4318|consen 792 TEQKKAAKKCFERLEEQLTVST-ADELSDFLKCLVKN 827 (1088)
T ss_pred HHHHHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHhc
No 480
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=45.97 E-value=42 Score=22.84 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q 015351 206 NEVERARQIYERFVQ 220 (408)
Q Consensus 206 ~~~~~A~~~~~~al~ 220 (408)
|+.+.|+..|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444445555444443
No 481
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=45.83 E-value=1.4e+02 Score=22.94 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=46.4
Q ss_pred cCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 015351 275 CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG 354 (408)
Q Consensus 275 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 354 (408)
.|+..+....|-..= -. .+.........-..|..+.. -+++......+..+|.++..++..|.+.|
T Consensus 69 C~NlKrVi~C~~~~n---~~---se~vD~ALd~lv~~~kkDqL--------dki~~~l~kn~~~~p~~L~kia~Ay~klg 134 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN---KL---SEYVDLALDILVKQGKKDQL--------DKIYNELKKNEEINPEFLVKIANAYKKLG 134 (161)
T ss_dssp -S-THHHHHHHHHTT---------HHHHHHHHHHHHTT-HHHH--------HHHHHHH-----S-HHHHHHHHHHHHHTT
T ss_pred hcchHHHHHHHHHhc---ch---HHHHHHHHHHHHHhccHHHH--------HHHHHHHhhccCCCHHHHHHHHHHHHHhc
Confidence 456666666665421 11 23444444555566764442 23344444445568999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 015351 355 NKERAREVYERAIAN 369 (408)
Q Consensus 355 ~~~~A~~~~~~al~~ 369 (408)
+..++.+++.+|-+.
T Consensus 135 ~~r~~~ell~~ACek 149 (161)
T PF09205_consen 135 NTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHh
Confidence 999999999998864
No 482
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=44.40 E-value=60 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChH
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHT 126 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 126 (408)
..+|+.+...|++++|...|-+|+...|+-..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 56788889999999999999999998886543
No 483
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=43.32 E-value=52 Score=30.13 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=8.8
Q ss_pred CCChHHHHHHHHHHHhcc
Q 015351 122 YRNHTLWLKYAEVEMKNK 139 (408)
Q Consensus 122 p~~~~~~~~~a~~~~~~~ 139 (408)
..+|..|..+|..+...|
T Consensus 347 ~ddPetWv~vAEa~I~LG 364 (404)
T PF12753_consen 347 EDDPETWVDVAEAMIDLG 364 (404)
T ss_dssp S--TTHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhhhh
Confidence 344555555555555555
No 484
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=41.28 E-value=46 Score=30.46 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 015351 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGN 355 (408)
Q Consensus 322 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 355 (408)
+.+|+.++++|.. .++|+.|..++.++...||
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 6778888888775 5678899999988887775
No 485
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=41.09 E-value=55 Score=21.85 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHHH
Q 015351 206 NEVERARQIYERF 218 (408)
Q Consensus 206 ~~~~~A~~~~~~a 218 (408)
|++++|+.+|.++
T Consensus 20 g~y~eA~~~Y~~a 32 (75)
T cd02678 20 GNYEEALRLYQHA 32 (75)
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
No 486
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.09 E-value=3.9e+02 Score=26.89 Aligned_cols=80 Identities=8% Similarity=0.043 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015351 208 VERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKF 287 (408)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 287 (408)
.++|...+..+.....+...+-....+-...++++.+...+...-..... .....+-+|+.+...|+.++|...|++
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~---~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE---KDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc---CHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555544333223333333334445677887766666653222222 455666778887789999999999999
Q ss_pred HHh
Q 015351 288 ALD 290 (408)
Q Consensus 288 al~ 290 (408)
+..
T Consensus 372 ~a~ 374 (644)
T PRK11619 372 LMQ 374 (644)
T ss_pred Hhc
Confidence 854
No 487
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.04 E-value=2.1e+02 Score=23.66 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChH-HHHHHHHHHHhccCHHHHHHHHHHHHHhCC
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHT-LWLKYAEVEMKNKFINHARNVWDRAVTLLP 156 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 156 (408)
.....+.......||++.|-++|--++...+-+.. .|-.=+.++...+......+.++......|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 45666777778889999999999999876655543 444444566666655555466666655554
No 488
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.87 E-value=4.4e+02 Score=27.49 Aligned_cols=194 Identities=14% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhCCC--HHHHHH--
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVT----LLPRVDQLWYKYIHMEEMLGNV--AGARQIFERWMHWMPD--QQGWLS-- 197 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~--~~~~~~-- 197 (408)
+..++.+|...|++++|.+++..... .++.....+-...++....+.. +-..++-.=.+..+|. ..++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHHhhhHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 015351 198 ----------YIKFELRYNEVERARQIYERFVQCH--PKVSTWIKYAKFEMKMGE-----------------VDRARNVY 248 (408)
Q Consensus 198 ----------~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~a~~~~~~~~-----------------~~~A~~~~ 248 (408)
-..-+......+-++.+++.++... ++......++..|...=+ .+.....+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Q ss_pred HHHHHHcCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 015351 249 ERAVEKLAD----DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGK 324 (408)
Q Consensus 249 ~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (408)
+..-...|. .-....+|...+.++.+.|+.++|+.+|-..+.. ++.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d------------------------------~~~ 716 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDD------------------------------IDA 716 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcc------------------------------hhH
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015351 325 RRFQYEDEVRKNPMNYDIWFDYIRLEE 351 (408)
Q Consensus 325 A~~~~~~al~~~p~~~~~~~~~~~~~~ 351 (408)
|..+.....+..+.+...+..+..++.
T Consensus 717 A~~Yc~~~y~~~~~~~~~y~~lL~~~l 743 (877)
T KOG2063|consen 717 AESYCLPQYESDKTNKEIYLTLLRIYL 743 (877)
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHh
No 489
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=40.86 E-value=56 Score=17.13 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015351 326 RFQYEDEVRKNPMNYDIWFDYIRLEES 352 (408)
Q Consensus 326 ~~~~~~al~~~p~~~~~~~~~~~~~~~ 352 (408)
+..-..++..+|.|..+|...-.+...
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 455678888999999999887666543
No 490
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=40.85 E-value=3.8e+02 Score=26.74 Aligned_cols=92 Identities=12% Similarity=0.020 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHH
Q 015351 195 WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDE---EAEQLFVAFAEF 271 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~ 271 (408)
...|..++.-.|+++.|+.++-+ ....+...+++.++. ...|-..-....-...+...+.++ ....+...|..
T Consensus 261 p~~Yf~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL--~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~- 336 (613)
T PF04097_consen 261 PLLYFQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIAL--AYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR- 336 (613)
T ss_dssp ---HHHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHH--HHTT------------------------HHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHH--HHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH-
Confidence 34556666778899999988877 111111223333333 333322211111144444443321 12333333333
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 015351 272 EERCKETERARCIYKFALD 290 (408)
Q Consensus 272 ~~~~~~~~~A~~~~~~al~ 290 (408)
.....+...|..+|--+-.
T Consensus 337 ~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGG
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 2346788888888765443
No 491
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.33 E-value=4.2e+02 Score=28.10 Aligned_cols=131 Identities=10% Similarity=0.058 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHH
Q 015351 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG--NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYE 216 (408)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~ 216 (408)
+.+.....+..++....+.......+...|.+.+ +++.|+....+.-+..+. .+-...+..++. .+-++|+
T Consensus 793 KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLv------Dvn~Ly~ 866 (928)
T PF04762_consen 793 KVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLV------DVNKLYD 866 (928)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeec------cHHHHHH
Confidence 4455555555555433333444455555555555 555665555554443322 222222222222 1333444
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015351 217 RFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKF 287 (408)
Q Consensus 217 ~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 287 (408)
.||-.. ++-+.+.-....+.++.+=+-++++.-+..|. + .--.+-...|++++|+..+.+
T Consensus 867 ~ALG~Y---Dl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~-------~-rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 867 VALGTY---DLELALMVAQQSQKDPKEYLPFLQELQKLPPL-------Y-RRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHhhhc---CHHHHHHHHHHhccChHHHHHHHHHHHhCChh-------h-eeeeHhhhhCCHHHHHHHHHh
Confidence 444321 11122222234456666666666664433221 1 122233356788888877654
No 492
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=39.83 E-value=2.4e+02 Score=24.15 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhh
Q 015351 356 KERAREVYERAIA-----NVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406 (408)
Q Consensus 356 ~~~A~~~~~~al~-----~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~ 406 (408)
.+.|...|+.|+. ..|.+|- .+-+.++|+.|+--..++.++|.++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~Pi------rLgLaLN~SVF~yEI~~~~~~A~~l 193 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPI------RLGLALNFSVFYYEILNSPDRACNL 193 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHH------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5688999998876 3466664 3457788888874356998888765
No 493
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=39.73 E-value=2.7e+02 Score=24.74 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH----HhCCCchHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV----TLLPRVDQLWYKYIH 167 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~~~~ 167 (408)
+....|-+.+ .++++.+..+..++.+..+|.-.+.....+.+..+.|. +.+.......+ ...|.-..
T Consensus 101 d~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~------- 171 (301)
T TIGR03362 101 DRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLE------- 171 (301)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhh-------
Confidence 4444444444 66788899999999998899888888888999999984 44444433333 33444211
Q ss_pred HHHHcCCh---HHHHHHHHHHHH-----------hCCCHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhCCCh--H--
Q 015351 168 MEEMLGNV---AGARQIFERWMH-----------WMPDQQGWLSY---IKFELRYNEVERARQIYERFVQCHPKV--S-- 226 (408)
Q Consensus 168 ~~~~~~~~---~~A~~~~~~al~-----------~~p~~~~~~~~---~~~~~~~~~~~~A~~~~~~al~~~p~~--~-- 226 (408)
+.+..|.. +....-+..-.. ..+...-|... +......+.++.|+..++..+...++. .
T Consensus 172 L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~ 251 (301)
T TIGR03362 172 LKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFH 251 (301)
T ss_pred cccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHH
Confidence 11111110 111111111000 00100113322 344556789999999999876655442 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 015351 227 TWIKYAKFEMKMGEVDRARNVYERAVEKLA 256 (408)
Q Consensus 227 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 256 (408)
..+.++.++.+.|..+-|...|+...+...
T Consensus 252 ~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~ 281 (301)
T TIGR03362 252 WRLLLARLLEQAGKAELAQQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999877643
No 494
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=39.29 E-value=2.5e+02 Score=24.10 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 015351 241 VDRARNVYERAVEK-----LADDEEAEQLFVAFAEFEER-CKETERARCIYKFALD 290 (408)
Q Consensus 241 ~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~ 290 (408)
.+.|.+.|+.|++. .|.+|....+.++++.++.. .++.++|..+.++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34666666666543 24444444455555555543 4666666655555543
No 495
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=37.07 E-value=4.2e+02 Score=26.09 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhCC
Q 015351 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQGWLSYIKFELRY--NEVERARQIYERFVQCHP 223 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p 223 (408)
+...+|..+|..+.+.+++..|+.-|.++++.... +++...+.++...- .+....++.|+...+-.|
T Consensus 585 D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhccCCc
Confidence 34568899999999999999999999999887654 66666666654432 234555666665555434
No 496
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.03 E-value=84 Score=20.42 Aligned_cols=17 Identities=47% Similarity=0.667 Sum_probs=10.1
Q ss_pred HcCCHHHHHHHHHHHHh
Q 015351 352 SVGNKERAREVYERAIA 368 (408)
Q Consensus 352 ~~g~~~~A~~~~~~al~ 368 (408)
..|++++|+.+|..|+.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 45666666666665554
No 497
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=36.43 E-value=2.1e+02 Score=22.46 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 196 LSYIKFELRYNEVERARQIYERFVQCH-------P--KVSTWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~A~~~~~~al~~~-------p--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
..-++-..+.|+...|+..++.+-..- | ..+.-+..+.-+...|++.+|...+..+++.
T Consensus 79 i~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 79 IKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 333455556788888888877664321 2 1234556677778889999998888888753
No 498
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=35.67 E-value=1.7e+02 Score=21.20 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=19.1
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
|-+....|++..|.+...++-+..+..+-.+..-++....+|
T Consensus 66 Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 66 GLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 334445555666665555554443333333333333333333
No 499
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=34.86 E-value=1.5e+02 Score=21.17 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH
Q 015351 234 FEMKMGEVDRARNVYERAVEK---LADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310 (408)
Q Consensus 234 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 310 (408)
.+...++.+...++++...+. .|.......+...+|. +..+|...+++-.......+....|..|..++.+
T Consensus 23 ~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~------~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v~~~ 96 (100)
T PF08771_consen 23 LYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGR------DLQEAREWLKRYERTGDETDLNQAWDIYYQVYRR 96 (100)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHH------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHhhhCCHhhHHHHHHHHHHHHHH
Confidence 344555666666665544332 2332222223333333 3455555555554433333334555555555443
No 500
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=34.59 E-value=4.6e+02 Score=25.83 Aligned_cols=126 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKM 238 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~ 238 (408)
++.+..-.|+.+--..++-.++...|+ +-.-..+-+-+.....|.-|....++.--. ...+|..+|..+.+.
T Consensus 523 LaL~diwigkadlLn~Ll~a~i~hv~SLDdIad~~asecLRdqLie~ErYqlaV~mckKc~iD--~f~aW~AWGlA~Lk~ 600 (1141)
T KOG1811|consen 523 LALCDIWIGKADLLNILLAAAIRHVPSLDDIADPAASECLRDQLIEAERYQLAVEMCKKCGID--TFGAWHAWGLACLKA 600 (1141)
T ss_pred hHHHHHHHhHHHHHHHHHHHHhccCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--cccHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCC
Q 015351 239 GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC--KETERARCIYKFALDHIPK 294 (408)
Q Consensus 239 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~ 294 (408)
+++..|+.-|.++++....+ .|++...+...-... .+....+++|+...+..|.
T Consensus 601 e~~aaAR~KFkqafklkged--ipdvi~diin~ieGgpp~dVq~Vrem~dhlak~apt 656 (1141)
T KOG1811|consen 601 ENLAAAREKFKQAFKLKGED--IPDVIFDIINLIEGGPPRDVQDVREMLDHLAKPAPT 656 (1141)
T ss_pred hhHHHHHHHHHHHhCCCCCc--cchHHHHHHHhhcCCCcchHHHHHHHHHHhccCCcc
Done!