Query 015351
Match_columns 408
No_of_seqs 465 out of 2553
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 11:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-38 5.5E-43 292.4 37.1 343 42-408 19-363 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-37 9.2E-42 284.3 40.6 314 71-407 13-328 (388)
3 2y4t_A DNAJ homolog subfamily 100.0 1.7E-34 5.7E-39 270.8 34.6 293 72-375 41-364 (450)
4 3ieg_A DNAJ homolog subfamily 100.0 3.2E-33 1.1E-37 253.5 41.1 294 71-375 17-341 (359)
5 2y4t_A DNAJ homolog subfamily 100.0 1.2E-33 4.1E-38 264.9 38.8 310 76-408 11-353 (450)
6 3ieg_A DNAJ homolog subfamily 100.0 1.5E-32 5.1E-37 249.1 38.8 296 90-408 2-330 (359)
7 3hym_B Cell division cycle pro 100.0 8.6E-33 2.9E-37 247.9 35.0 301 81-401 12-322 (330)
8 2xpi_A Anaphase-promoting comp 100.0 6.1E-32 2.1E-36 262.5 39.8 293 70-375 285-585 (597)
9 2xpi_A Anaphase-promoting comp 100.0 1.2E-32 4E-37 267.5 33.8 314 71-408 214-574 (597)
10 3fp2_A TPR repeat-containing p 100.0 8.1E-33 2.8E-37 265.1 28.7 313 73-408 41-486 (537)
11 2ooe_A Cleavage stimulation fa 100.0 1.9E-32 6.6E-37 262.2 30.0 325 71-407 26-486 (530)
12 2gw1_A Mitochondrial precursor 100.0 2.4E-32 8.1E-37 260.3 27.0 315 71-408 53-473 (514)
13 1fch_A Peroxisomal targeting s 100.0 1.2E-31 4.2E-36 244.4 29.4 285 71-369 39-359 (368)
14 2gw1_A Mitochondrial precursor 100.0 2E-31 6.7E-36 253.9 30.9 318 72-407 21-438 (514)
15 3hym_B Cell division cycle pro 100.0 9.4E-31 3.2E-35 234.6 32.5 277 71-357 36-322 (330)
16 4eqf_A PEX5-related protein; a 100.0 5.7E-31 1.9E-35 240.0 27.6 280 77-369 47-356 (365)
17 2ooe_A Cleavage stimulation fa 100.0 1.5E-29 5.2E-34 242.1 37.7 313 79-408 1-449 (530)
18 3fp2_A TPR repeat-containing p 100.0 4.5E-30 1.5E-34 246.0 33.8 324 40-376 43-498 (537)
19 1fch_A Peroxisomal targeting s 100.0 2.3E-30 7.8E-35 236.0 28.9 295 101-408 35-354 (368)
20 3cv0_A Peroxisome targeting si 100.0 7.6E-30 2.6E-34 228.4 26.9 271 90-373 20-319 (327)
21 4eqf_A PEX5-related protein; a 100.0 1.1E-29 3.7E-34 231.5 27.3 284 112-407 48-350 (365)
22 2h6f_A Protein farnesyltransfe 100.0 2.6E-29 9E-34 228.2 25.3 264 83-353 89-366 (382)
23 4e6h_A MRNA 3'-END-processing 100.0 4.1E-28 1.4E-32 234.0 31.9 355 41-407 51-564 (679)
24 4g1t_A Interferon-induced prot 100.0 1.9E-27 6.6E-32 224.2 33.5 287 71-377 152-467 (472)
25 2ond_A Cleavage stimulation fa 100.0 9.1E-28 3.1E-32 213.5 29.2 266 87-375 4-298 (308)
26 4g1t_A Interferon-induced prot 100.0 8.2E-27 2.8E-31 219.9 37.0 308 88-407 48-395 (472)
27 3cv0_A Peroxisome targeting si 100.0 1.5E-27 5.1E-32 213.5 28.7 271 124-408 20-310 (327)
28 2h6f_A Protein farnesyltransfe 100.0 6.5E-28 2.2E-32 219.0 25.2 248 116-375 88-354 (382)
29 2pl2_A Hypothetical conserved 100.0 2.4E-27 8.3E-32 199.5 24.1 199 88-289 2-212 (217)
30 4e6h_A MRNA 3'-END-processing 100.0 5.9E-26 2E-30 219.0 35.4 280 76-369 51-463 (679)
31 2ond_A Cleavage stimulation fa 100.0 1.1E-26 3.8E-31 206.4 26.7 242 121-375 4-276 (308)
32 3u4t_A TPR repeat-containing p 100.0 1.2E-26 4.1E-31 202.2 25.5 252 90-353 2-268 (272)
33 3uq3_A Heat shock protein STI1 100.0 6.4E-26 2.2E-30 195.7 27.8 239 90-349 4-256 (258)
34 3mkr_A Coatomer subunit epsilo 100.0 1.3E-25 4.3E-30 197.4 27.8 276 98-407 6-288 (291)
35 3uq3_A Heat shock protein STI1 99.9 3.5E-25 1.2E-29 191.0 27.5 232 123-375 3-248 (258)
36 3u4t_A TPR repeat-containing p 99.9 3.7E-25 1.3E-29 192.8 25.0 235 72-309 18-266 (272)
37 2pl2_A Hypothetical conserved 99.9 5.7E-25 1.9E-29 185.0 25.2 199 122-334 2-213 (217)
38 3sf4_A G-protein-signaling mod 99.9 4.8E-25 1.7E-29 203.2 25.4 301 88-400 6-363 (406)
39 3mkr_A Coatomer subunit epsilo 99.9 1.5E-24 5E-29 190.7 26.3 267 72-362 14-287 (291)
40 4a1s_A PINS, partner of inscut 99.9 4.7E-25 1.6E-29 204.0 22.9 279 89-375 46-378 (411)
41 2uy1_A Cleavage stimulation fa 99.9 6.3E-24 2.2E-28 199.5 30.2 321 40-407 13-377 (493)
42 2uy1_A Cleavage stimulation fa 99.9 2.1E-23 7.3E-28 196.0 33.5 302 74-407 65-407 (493)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.1E-24 7.3E-29 188.1 23.9 225 71-295 19-248 (275)
44 2q7f_A YRRB protein; TPR, prot 99.9 3.3E-24 1.1E-28 183.4 23.5 215 90-309 22-238 (243)
45 3ro2_A PINS homolog, G-protein 99.9 3.2E-24 1.1E-28 192.1 24.1 275 91-373 5-336 (338)
46 2vq2_A PILW, putative fimbrial 99.9 6E-23 2E-27 173.2 28.7 207 86-295 3-215 (225)
47 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.4E-24 2.2E-28 185.1 22.6 249 100-363 14-269 (275)
48 2ho1_A Type 4 fimbrial biogene 99.9 2.9E-23 9.8E-28 178.7 26.2 207 86-295 31-242 (252)
49 3sf4_A G-protein-signaling mod 99.9 2.5E-24 8.5E-29 198.4 19.4 279 72-358 24-365 (406)
50 4abn_A Tetratricopeptide repea 99.9 1.3E-23 4.4E-28 197.6 24.5 216 68-287 79-317 (474)
51 2xm6_A Protein corresponding t 99.9 3.5E-21 1.2E-25 182.3 40.7 299 73-407 95-426 (490)
52 3vtx_A MAMA; tetratricopeptide 99.9 4.3E-23 1.5E-27 168.8 23.9 169 89-257 3-173 (184)
53 2q7f_A YRRB protein; TPR, prot 99.9 2.6E-23 9E-28 177.7 23.1 218 124-354 22-241 (243)
54 2xm6_A Protein corresponding t 99.9 7.1E-21 2.4E-25 180.2 41.2 297 72-407 58-390 (490)
55 1ouv_A Conserved hypothetical 99.9 6.5E-22 2.2E-26 172.5 31.5 236 87-345 2-261 (273)
56 2vq2_A PILW, putative fimbrial 99.9 7.2E-22 2.5E-26 166.5 28.9 214 120-346 3-222 (225)
57 2ho1_A Type 4 fimbrial biogene 99.9 4.3E-22 1.5E-26 171.3 27.5 214 119-345 30-248 (252)
58 3vtx_A MAMA; tetratricopeptide 99.9 1.7E-22 5.7E-27 165.3 23.1 171 122-295 2-174 (184)
59 1ouv_A Conserved hypothetical 99.9 2.5E-21 8.5E-26 168.8 31.6 232 121-375 2-257 (273)
60 4a1s_A PINS, partner of inscut 99.9 6E-23 2E-27 189.8 22.3 274 123-408 46-367 (411)
61 3ro2_A PINS homolog, G-protein 99.9 8.6E-23 2.9E-27 182.8 20.8 261 71-339 19-336 (338)
62 4abn_A Tetratricopeptide repea 99.9 1.5E-22 5.2E-27 190.3 21.3 207 105-313 82-307 (474)
63 4gyw_A UDP-N-acetylglucosamine 99.9 5.7E-22 2E-26 193.5 21.2 172 86-257 4-177 (723)
64 4i17_A Hypothetical protein; T 99.9 5.1E-21 1.7E-25 162.1 22.8 210 87-308 3-224 (228)
65 3ulq_A Response regulator aspa 99.9 5.4E-21 1.9E-25 175.1 23.2 293 73-372 28-371 (383)
66 3dra_A Protein farnesyltransfe 99.9 4.7E-20 1.6E-24 161.0 27.7 227 74-305 50-300 (306)
67 4i17_A Hypothetical protein; T 99.9 1.5E-19 5.1E-24 153.0 28.8 212 121-350 3-224 (228)
68 4gyw_A UDP-N-acetylglucosamine 99.9 3.5E-21 1.2E-25 188.0 21.1 172 120-294 4-177 (723)
69 3nf1_A KLC 1, kinesin light ch 99.9 7.5E-22 2.6E-26 175.0 14.7 253 86-372 22-310 (311)
70 3e4b_A ALGK; tetratricopeptide 99.9 5.9E-21 2E-25 178.4 20.9 295 74-407 55-381 (452)
71 3qky_A Outer membrane assembly 99.9 1.8E-20 6.1E-25 162.2 21.9 197 84-296 8-229 (261)
72 3nf1_A KLC 1, kinesin light ch 99.9 7E-21 2.4E-25 168.7 16.4 221 71-294 41-310 (311)
73 3e4b_A ALGK; tetratricopeptide 99.9 3.3E-19 1.1E-23 166.5 26.9 275 72-371 89-389 (452)
74 3urz_A Uncharacterized protein 99.9 3.9E-20 1.3E-24 154.3 18.1 168 90-257 3-189 (208)
75 3qky_A Outer membrane assembly 99.8 5.5E-19 1.9E-23 152.8 25.4 174 118-311 8-198 (261)
76 1hz4_A MALT regulatory protein 99.8 3.2E-18 1.1E-22 156.1 31.3 272 92-372 15-325 (373)
77 3ulq_A Response regulator aspa 99.8 2E-19 6.7E-24 164.8 22.6 248 78-337 85-370 (383)
78 2pzi_A Probable serine/threoni 99.8 3.8E-20 1.3E-24 181.5 17.5 186 85-277 388-583 (681)
79 1b89_A Protein (clathrin heavy 99.8 1.4E-21 4.9E-26 175.8 6.6 286 71-406 17-304 (449)
80 3dra_A Protein farnesyltransfe 99.8 5.2E-18 1.8E-22 148.1 28.5 231 106-349 48-302 (306)
81 3as5_A MAMA; tetratricopeptide 99.8 4.6E-19 1.6E-23 144.3 20.7 167 91-257 8-176 (186)
82 1qqe_A Vesicular transport pro 99.8 1.7E-19 6E-24 158.6 18.3 251 76-350 4-284 (292)
83 4ga2_A E3 SUMO-protein ligase 99.8 9.7E-20 3.3E-24 143.3 14.1 138 70-207 10-149 (150)
84 1xi4_A Clathrin heavy chain; a 99.8 2.5E-17 8.7E-22 164.6 34.0 252 88-365 1102-1380(1630)
85 3q15_A PSP28, response regulat 99.8 3.3E-18 1.1E-22 156.3 25.9 235 127-370 103-366 (378)
86 1qqe_A Vesicular transport pro 99.8 3.9E-19 1.3E-23 156.3 18.9 240 109-374 3-274 (292)
87 2yhc_A BAMD, UPF0169 lipoprote 99.8 5.3E-18 1.8E-22 143.1 24.8 190 90-295 3-217 (225)
88 4ga2_A E3 SUMO-protein ligase 99.8 5.5E-20 1.9E-24 144.8 11.4 144 97-240 3-149 (150)
89 3urz_A Uncharacterized protein 99.8 5.2E-19 1.8E-23 147.4 17.4 162 73-234 20-199 (208)
90 2pzi_A Probable serine/threoni 99.8 6.4E-19 2.2E-23 172.8 20.7 186 119-313 388-583 (681)
91 3as5_A MAMA; tetratricopeptide 99.8 1.8E-18 6E-23 140.8 19.4 169 124-295 7-177 (186)
92 1xi4_A Clathrin heavy chain; a 99.8 3.5E-17 1.2E-21 163.6 31.2 266 101-405 1086-1376(1630)
93 1hz4_A MALT regulatory protein 99.8 3.1E-17 1.1E-21 149.5 28.3 270 126-407 15-316 (373)
94 3edt_B KLC 2, kinesin light ch 99.8 7.5E-19 2.6E-23 153.2 16.6 218 71-291 22-281 (283)
95 3edt_B KLC 2, kinesin light ch 99.8 6.5E-19 2.2E-23 153.6 16.1 208 160-369 44-281 (283)
96 2r5s_A Uncharacterized protein 99.8 7.2E-19 2.4E-23 142.5 14.8 167 87-254 2-173 (176)
97 3dss_A Geranylgeranyl transfer 99.8 2E-16 6.7E-21 138.8 29.7 225 74-303 47-314 (331)
98 3q15_A PSP28, response regulat 99.8 5.4E-17 1.9E-21 148.2 25.2 232 93-335 103-365 (378)
99 3dss_A Geranylgeranyl transfer 99.8 5E-16 1.7E-20 136.2 29.4 191 102-295 40-271 (331)
100 4gco_A Protein STI-1; structur 99.8 4.5E-18 1.5E-22 129.3 14.0 120 82-201 4-124 (126)
101 3qou_A Protein YBBN; thioredox 99.8 3E-17 1E-21 143.8 20.5 167 87-253 113-283 (287)
102 3q7a_A Farnesyltransferase alp 99.8 1.6E-16 5.5E-21 139.9 23.4 230 74-305 71-344 (349)
103 3gyz_A Chaperone protein IPGC; 99.8 3.6E-18 1.2E-22 133.8 11.0 118 76-193 21-138 (151)
104 3qou_A Protein YBBN; thioredox 99.8 6.7E-17 2.3E-21 141.6 20.3 171 119-290 111-283 (287)
105 2r5s_A Uncharacterized protein 99.8 1E-17 3.5E-22 135.7 13.2 169 121-290 2-172 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.8E-16 9.5E-21 132.5 22.2 191 158-375 3-219 (225)
107 2vsy_A XCC0866; transferase, g 99.7 4.7E-17 1.6E-21 156.8 19.6 162 71-232 3-169 (568)
108 1b89_A Protein (clathrin heavy 99.7 2.5E-18 8.6E-23 154.8 9.8 259 70-366 45-308 (449)
109 3q7a_A Farnesyltransferase alp 99.7 2.3E-15 7.7E-20 132.6 26.7 237 102-349 65-346 (349)
110 3gyz_A Chaperone protein IPGC; 99.7 2E-17 6.9E-22 129.5 12.2 117 110-226 21-138 (151)
111 2ifu_A Gamma-SNAP; membrane fu 99.7 3.8E-16 1.3E-20 138.3 21.2 200 71-295 5-227 (307)
112 2vsy_A XCC0866; transferase, g 99.7 9.4E-17 3.2E-21 154.7 18.2 163 104-269 2-169 (568)
113 4gco_A Protein STI-1; structur 99.7 1.2E-16 4.1E-21 121.4 14.5 119 116-234 4-124 (126)
114 2vgx_A Chaperone SYCD; alterna 99.7 1.1E-16 3.8E-21 125.4 14.0 115 77-191 7-121 (148)
115 2xcb_A PCRH, regulatory protei 99.7 8.9E-17 3.1E-21 125.1 12.7 119 78-196 5-124 (142)
116 2c2l_A CHIP, carboxy terminus 99.7 7.4E-17 2.5E-21 140.8 12.6 191 88-291 1-199 (281)
117 2ifu_A Gamma-SNAP; membrane fu 99.7 9.4E-16 3.2E-20 135.7 19.8 203 103-338 3-226 (307)
118 2fo7_A Synthetic consensus TPR 99.7 2.5E-15 8.5E-20 115.1 18.4 133 92-224 2-135 (136)
119 1p5q_A FKBP52, FK506-binding p 99.7 2.4E-16 8.1E-21 141.2 13.9 148 74-221 130-294 (336)
120 4f3v_A ESX-1 secretion system 99.7 9.7E-17 3.3E-21 136.8 9.9 184 73-257 22-240 (282)
121 3rjv_A Putative SEL1 repeat pr 99.7 1.1E-14 3.7E-19 121.4 21.1 174 75-255 4-198 (212)
122 1p5q_A FKBP52, FK506-binding p 99.7 2.2E-17 7.6E-22 147.9 3.9 179 74-254 82-294 (336)
123 2e2e_A Formate-dependent nitri 99.7 3.7E-15 1.3E-19 120.5 16.2 121 71-191 24-147 (177)
124 4f3v_A ESX-1 secretion system 99.7 4.3E-16 1.5E-20 132.8 10.9 200 103-306 18-249 (282)
125 2vgx_A Chaperone SYCD; alterna 99.7 1.6E-15 5.5E-20 118.7 13.0 115 110-224 6-121 (148)
126 3upv_A Heat shock protein STI1 99.6 5.5E-15 1.9E-19 112.3 15.2 115 88-202 1-122 (126)
127 1a17_A Serine/threonine protei 99.6 2.6E-14 8.9E-19 113.9 19.4 131 91-221 13-146 (166)
128 2fo7_A Synthetic consensus TPR 99.6 2.9E-14 9.9E-19 109.0 18.7 132 126-257 2-135 (136)
129 2lni_A Stress-induced-phosphop 99.6 1.4E-14 4.9E-19 110.7 15.1 120 87-206 12-132 (133)
130 3rjv_A Putative SEL1 repeat pr 99.6 3.3E-14 1.1E-18 118.5 18.2 176 108-293 3-199 (212)
131 2xcb_A PCRH, regulatory protei 99.6 3.5E-15 1.2E-19 116.0 11.4 113 112-224 5-118 (142)
132 2vyi_A SGTA protein; chaperone 99.6 1.2E-14 4.2E-19 110.6 14.1 124 85-208 6-130 (131)
133 2c2l_A CHIP, carboxy terminus 99.6 5.3E-15 1.8E-19 129.0 12.4 196 122-369 1-199 (281)
134 2qfc_A PLCR protein; TPR, HTH, 99.6 1.3E-13 4.6E-18 121.0 21.3 166 126-291 76-266 (293)
135 3sz7_A HSC70 cochaperone (SGT) 99.6 2.1E-14 7.1E-19 114.6 14.5 113 87-199 7-120 (164)
136 2e2e_A Formate-dependent nitri 99.6 1.9E-14 6.6E-19 116.3 14.3 124 102-225 21-148 (177)
137 2fbn_A 70 kDa peptidylprolyl i 99.6 7E-15 2.4E-19 121.3 11.9 147 74-220 21-185 (198)
138 4gcn_A Protein STI-1; structur 99.6 1.5E-14 5.3E-19 109.9 12.9 108 91-198 8-122 (127)
139 1dce_A Protein (RAB geranylger 99.6 5E-14 1.7E-18 134.3 19.3 170 74-243 46-244 (567)
140 3q49_B STIP1 homology and U bo 99.6 5.7E-14 1.9E-18 108.2 15.9 121 85-205 3-129 (137)
141 1na0_A Designed protein CTPR3; 99.6 1.3E-13 4.4E-18 103.9 17.2 120 87-206 4-125 (125)
142 3mv2_B Coatomer subunit epsilo 99.6 3.8E-13 1.3E-17 116.2 21.4 248 99-375 21-288 (310)
143 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.3E-13 4.6E-18 114.8 17.2 144 93-257 8-153 (213)
144 2fbn_A 70 kDa peptidylprolyl i 99.6 8.1E-15 2.8E-19 120.9 9.5 150 96-245 9-176 (198)
145 1dce_A Protein (RAB geranylger 99.6 1.6E-14 5.3E-19 137.8 12.6 186 106-294 44-270 (567)
146 1hxi_A PEX5, peroxisome target 99.6 3.5E-14 1.2E-18 106.9 12.0 100 92-191 18-117 (121)
147 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.7E-14 5.8E-19 134.7 12.0 147 74-220 251-414 (457)
148 3mv2_B Coatomer subunit epsilo 99.6 1E-12 3.5E-17 113.5 22.1 181 110-296 85-287 (310)
149 1elw_A TPR1-domain of HOP; HOP 99.6 2.1E-13 7.1E-18 101.6 15.6 112 91-202 4-116 (118)
150 3upv_A Heat shock protein STI1 99.5 1.5E-13 5.3E-18 104.2 14.8 100 123-222 2-102 (126)
151 1a17_A Serine/threonine protei 99.5 4.2E-13 1.4E-17 106.8 17.5 130 125-254 13-146 (166)
152 4gcn_A Protein STI-1; structur 99.5 1.2E-13 4.2E-18 104.9 13.2 108 124-231 7-122 (127)
153 2vyi_A SGTA protein; chaperone 99.5 2.8E-13 9.7E-18 102.9 15.0 122 120-241 7-130 (131)
154 2qfc_A PLCR protein; TPR, HTH, 99.5 1.8E-12 6.3E-17 113.7 22.2 169 85-253 69-265 (293)
155 2dba_A Smooth muscle cell asso 99.5 3.2E-13 1.1E-17 105.3 15.2 118 86-203 23-144 (148)
156 2lni_A Stress-induced-phosphop 99.5 3.4E-13 1.2E-17 103.0 14.4 119 121-239 12-132 (133)
157 1hh8_A P67PHOX, NCF-2, neutrop 99.5 6.9E-13 2.4E-17 110.4 17.4 133 162-296 9-155 (213)
158 2kck_A TPR repeat; tetratricop 99.5 1.1E-13 3.8E-18 102.1 11.1 105 87-191 2-109 (112)
159 1elr_A TPR2A-domain of HOP; HO 99.5 2.6E-13 8.8E-18 103.2 13.2 117 90-206 3-126 (131)
160 2hr2_A Hypothetical protein; a 99.5 2.7E-13 9.2E-18 104.7 12.7 101 91-191 11-134 (159)
161 3rkv_A Putative peptidylprolyl 99.5 4E-13 1.4E-17 106.8 14.3 117 91-207 11-147 (162)
162 1na0_A Designed protein CTPR3; 99.5 2.5E-12 8.5E-17 96.7 17.3 118 121-238 4-124 (125)
163 3sz7_A HSC70 cochaperone (SGT) 99.5 6.8E-13 2.3E-17 105.7 14.7 110 121-230 7-118 (164)
164 1hxi_A PEX5, peroxisome target 99.5 6.8E-13 2.3E-17 99.7 13.6 99 126-224 18-117 (121)
165 3u3w_A Transcriptional activat 99.5 1.6E-12 5.4E-17 114.1 18.1 160 132-291 82-266 (293)
166 3q49_B STIP1 homology and U bo 99.5 9.3E-13 3.2E-17 101.3 14.4 106 119-224 3-109 (137)
167 2xev_A YBGF; tetratricopeptide 99.5 1.8E-12 6E-17 98.5 15.5 108 92-199 3-117 (129)
168 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 7.5E-14 2.6E-18 130.3 8.7 142 103-244 246-404 (457)
169 3u3w_A Transcriptional activat 99.5 5.1E-12 1.8E-16 110.8 18.9 160 95-254 79-266 (293)
170 1wao_1 Serine/threonine protei 99.5 2.8E-14 9.7E-19 133.7 4.6 126 91-216 6-134 (477)
171 3gw4_A Uncharacterized protein 99.4 2.5E-12 8.7E-17 105.9 15.8 151 103-253 4-175 (203)
172 3gw4_A Uncharacterized protein 99.4 1.1E-12 3.8E-17 108.1 13.1 151 71-222 6-177 (203)
173 1zu2_A Mitochondrial import re 99.4 1.2E-12 4.2E-17 100.8 11.9 89 71-159 16-125 (158)
174 1elw_A TPR1-domain of HOP; HOP 99.4 7.9E-12 2.7E-16 92.9 16.1 110 125-234 4-115 (118)
175 2if4_A ATFKBP42; FKBP-like, al 99.4 1.4E-13 4.7E-18 123.3 6.9 157 84-257 172-331 (338)
176 4b4t_Q 26S proteasome regulato 99.4 8E-12 2.7E-16 115.9 18.6 201 91-291 4-245 (434)
177 2dba_A Smooth muscle cell asso 99.4 8.4E-12 2.9E-16 97.0 15.6 116 120-235 23-143 (148)
178 3k9i_A BH0479 protein; putativ 99.4 6.8E-13 2.3E-17 99.2 8.6 92 72-163 5-99 (117)
179 1ihg_A Cyclophilin 40; ppiase 99.4 4.9E-12 1.7E-16 114.4 15.9 123 91-213 223-362 (370)
180 1elr_A TPR2A-domain of HOP; HO 99.4 3.8E-12 1.3E-16 96.6 12.6 113 124-236 3-123 (131)
181 2hr2_A Hypothetical protein; a 99.4 4.3E-12 1.5E-16 98.0 12.4 99 125-223 11-133 (159)
182 2kck_A TPR repeat; tetratricop 99.4 3.3E-12 1.1E-16 94.1 11.0 104 121-224 2-109 (112)
183 1zu2_A Mitochondrial import re 99.4 2.8E-12 9.6E-17 98.8 10.6 89 103-191 14-123 (158)
184 3k9i_A BH0479 protein; putativ 99.4 1.3E-12 4.3E-17 97.7 8.2 89 103-191 2-93 (117)
185 1wao_1 Serine/threonine protei 99.4 9.4E-13 3.2E-17 123.4 8.6 121 71-191 20-153 (477)
186 3rkv_A Putative peptidylprolyl 99.4 1.1E-11 3.7E-16 98.4 13.1 100 125-224 11-129 (162)
187 4b4t_Q 26S proteasome regulato 99.3 6.3E-11 2.1E-15 109.8 19.5 203 125-335 4-245 (434)
188 2xev_A YBGF; tetratricopeptide 99.3 3.1E-11 1.1E-15 91.5 13.6 104 71-174 16-125 (129)
189 3ro3_A PINS homolog, G-protein 99.3 2.1E-11 7E-16 96.2 12.3 135 92-256 10-160 (164)
190 2if4_A ATFKBP42; FKBP-like, al 99.3 6.7E-12 2.3E-16 112.3 9.6 155 192-375 179-334 (338)
191 2kat_A Uncharacterized protein 99.3 3.5E-11 1.2E-15 89.4 11.6 81 76-156 4-84 (115)
192 2kat_A Uncharacterized protein 99.3 3.7E-11 1.3E-15 89.3 11.2 100 108-207 2-104 (115)
193 3ro3_A PINS homolog, G-protein 99.3 2E-10 6.7E-15 90.4 15.2 134 160-293 10-160 (164)
194 1ihg_A Cyclophilin 40; ppiase 99.2 2.5E-10 8.5E-15 103.2 16.0 121 228-361 226-362 (370)
195 1na3_A Designed protein CTPR2; 99.2 1.2E-10 4.2E-15 82.1 11.0 85 89-173 7-91 (91)
196 2l6j_A TPR repeat-containing p 99.2 1.7E-11 5.7E-16 90.3 5.7 94 90-183 3-102 (111)
197 4h7y_A Dual specificity protei 99.2 4.8E-10 1.6E-14 83.4 13.3 105 86-191 8-126 (161)
198 4h7y_A Dual specificity protei 99.2 7.3E-10 2.5E-14 82.5 14.2 119 120-239 8-141 (161)
199 3ma5_A Tetratricopeptide repea 99.1 3.8E-10 1.3E-14 81.4 10.2 72 86-157 2-73 (100)
200 3ma5_A Tetratricopeptide repea 99.1 3.9E-10 1.3E-14 81.3 10.2 72 120-191 2-73 (100)
201 1na3_A Designed protein CTPR2; 99.1 1.4E-09 4.7E-14 76.6 11.4 84 123-206 7-91 (91)
202 3ly7_A Transcriptional activat 99.1 7.4E-09 2.5E-13 91.0 17.3 148 80-227 183-345 (372)
203 4g26_A Pentatricopeptide repea 99.0 7.1E-08 2.4E-12 90.5 24.3 178 93-273 28-221 (501)
204 2kc7_A BFR218_protein; tetratr 99.0 4.5E-10 1.5E-14 80.7 7.4 89 95-191 4-93 (99)
205 3u64_A Protein TP_0956; tetrat 99.0 2.7E-08 9.2E-13 83.9 18.6 86 207-294 178-272 (301)
206 3u64_A Protein TP_0956; tetrat 99.0 1E-07 3.5E-12 80.4 21.6 91 277-375 178-276 (301)
207 2l6j_A TPR repeat-containing p 99.0 3E-10 1E-14 83.4 5.6 90 124-213 3-99 (111)
208 4g26_A Pentatricopeptide repea 99.0 8.9E-08 3.1E-12 89.8 23.4 175 127-307 28-219 (501)
209 3ly7_A Transcriptional activat 98.9 1.9E-08 6.5E-13 88.5 14.1 123 73-196 215-347 (372)
210 2kc7_A BFR218_protein; tetratr 98.9 5.3E-09 1.8E-13 75.0 8.6 87 129-223 4-92 (99)
211 1klx_A Cysteine rich protein B 98.9 9.4E-08 3.2E-12 73.1 15.5 111 71-189 9-127 (138)
212 3n71_A Histone lysine methyltr 98.8 4.2E-08 1.4E-12 91.4 14.4 121 100-220 318-463 (490)
213 1klx_A Cysteine rich protein B 98.8 1.4E-07 4.8E-12 72.2 14.4 110 105-221 9-126 (138)
214 3bee_A Putative YFRE protein; 98.8 2.7E-08 9.3E-13 70.0 9.4 71 87-157 2-75 (93)
215 3bee_A Putative YFRE protein; 98.8 3.6E-08 1.2E-12 69.4 9.3 75 121-196 2-79 (93)
216 3n71_A Histone lysine methyltr 98.7 1.9E-07 6.6E-12 87.0 15.0 124 168-291 318-464 (490)
217 1pc2_A Mitochondria fission pr 98.7 3.7E-07 1.3E-11 69.5 12.4 93 73-165 14-111 (152)
218 1pc2_A Mitochondria fission pr 98.5 2.7E-06 9.1E-11 64.7 12.0 87 105-191 12-103 (152)
219 2v5f_A Prolyl 4-hydroxylase su 98.3 5.1E-06 1.8E-10 59.8 10.6 77 90-166 4-87 (104)
220 3qww_A SET and MYND domain-con 98.2 4.8E-06 1.6E-10 76.3 9.8 84 104-187 311-410 (433)
221 3qww_A SET and MYND domain-con 98.2 1.4E-05 4.9E-10 73.1 11.9 88 204-291 310-411 (433)
222 2v5f_A Prolyl 4-hydroxylase su 98.1 4.5E-05 1.5E-09 54.7 11.7 80 262-349 5-89 (104)
223 3qwp_A SET and MYND domain-con 98.1 3.4E-05 1.2E-09 70.7 13.4 87 101-187 297-399 (429)
224 3qwp_A SET and MYND domain-con 98.0 9.2E-05 3.1E-09 67.9 14.3 90 202-291 297-400 (429)
225 1nzn_A CGI-135 protein, fissio 98.0 0.00018 6.1E-09 52.6 12.1 93 73-165 17-114 (126)
226 3ffl_A Anaphase-promoting comp 97.7 0.0005 1.7E-08 52.6 10.9 133 92-235 21-165 (167)
227 1nzn_A CGI-135 protein, fissio 97.7 0.0013 4.5E-08 48.0 12.2 89 103-191 13-106 (126)
228 3txn_A 26S proteasome regulato 97.5 0.044 1.5E-06 49.0 23.2 95 197-291 104-210 (394)
229 3ffl_A Anaphase-promoting comp 97.5 0.00061 2.1E-08 52.1 9.1 131 127-272 22-165 (167)
230 3esl_A Checkpoint serine/threo 97.3 0.031 1.1E-06 44.3 16.6 116 74-190 9-146 (202)
231 3o48_A Mitochondria fission 1 97.1 0.01 3.6E-07 43.4 11.7 85 210-296 25-112 (134)
232 1y8m_A FIS1; mitochondria, unk 97.1 0.013 4.6E-07 43.4 12.0 73 222-296 36-111 (144)
233 3o48_A Mitochondria fission 1 97.1 0.015 5.2E-07 42.6 11.8 75 298-377 40-115 (134)
234 4gns_B Protein CSD3, chitin bi 96.9 0.0098 3.3E-07 57.8 13.0 115 171-288 260-397 (754)
235 4gns_B Protein CSD3, chitin bi 96.9 0.0061 2.1E-07 59.3 11.6 113 73-185 265-397 (754)
236 3spa_A Mtrpol, DNA-directed RN 96.9 0.016 5.5E-07 57.7 14.1 98 125-223 127-232 (1134)
237 3esl_A Checkpoint serine/threo 96.9 0.11 3.6E-06 41.3 16.3 115 107-222 8-145 (202)
238 1y8m_A FIS1; mitochondria, unk 96.9 0.027 9.4E-07 41.8 12.1 74 298-376 39-113 (144)
239 3mkq_B Coatomer subunit alpha; 96.8 0.059 2E-06 42.0 13.8 44 102-150 16-59 (177)
240 3mkq_A Coatomer beta'-subunit; 96.7 0.1 3.4E-06 51.9 18.7 75 95-185 633-707 (814)
241 3spa_A Mtrpol, DNA-directed RN 96.6 0.026 9E-07 56.2 12.9 100 158-257 126-233 (1134)
242 3mkq_B Coatomer subunit alpha; 96.6 0.084 2.9E-06 41.1 13.2 101 134-250 14-114 (177)
243 3mkq_A Coatomer beta'-subunit; 96.4 0.068 2.3E-06 53.2 15.7 48 99-151 660-707 (814)
244 4a1g_A Mitotic checkpoint seri 96.4 0.012 4E-07 44.5 7.1 29 340-368 101-129 (152)
245 4a1g_A Mitotic checkpoint seri 96.3 0.066 2.3E-06 40.4 11.2 108 75-189 8-131 (152)
246 3txn_A 26S proteasome regulato 96.2 0.62 2.1E-05 41.6 27.7 166 92-257 20-213 (394)
247 4aez_C MAD3, mitotic spindle c 96.1 0.16 5.3E-06 41.1 12.8 112 73-190 51-181 (223)
248 4aez_C MAD3, mitotic spindle c 96.0 0.25 8.5E-06 39.9 13.7 110 107-222 51-180 (223)
249 2wvi_A Mitotic checkpoint seri 96.0 0.1 3.4E-06 40.1 10.8 93 91-189 19-126 (164)
250 4fhn_B Nucleoporin NUP120; pro 95.7 0.67 2.3E-05 48.1 19.2 188 97-290 818-1049(1139)
251 2ff4_A Probable regulatory pro 95.6 0.24 8.2E-06 44.5 13.8 59 162-220 174-233 (388)
252 1zbp_A Hypothetical protein VP 95.6 0.71 2.4E-05 38.5 14.9 57 102-158 8-64 (273)
253 1zbp_A Hypothetical protein VP 95.3 0.26 8.9E-06 41.0 11.6 114 134-257 6-132 (273)
254 4fhn_B Nucleoporin NUP120; pro 95.3 0.88 3E-05 47.2 18.2 173 82-254 833-1050(1139)
255 4b4t_P 26S proteasome regulato 95.3 1.8 6E-05 39.6 22.4 97 194-290 139-246 (445)
256 2wvi_A Mitotic checkpoint seri 95.2 0.41 1.4E-05 36.7 11.6 92 125-222 19-126 (164)
257 2ff4_A Probable regulatory pro 95.2 0.41 1.4E-05 43.0 13.8 101 137-254 127-234 (388)
258 1qsa_A Protein (soluble lytic 95.1 2.5 8.6E-05 40.4 25.9 266 78-368 56-347 (618)
259 4b4t_R RPN7, 26S proteasome re 94.8 0.69 2.4E-05 42.1 14.2 99 91-189 131-238 (429)
260 1qsa_A Protein (soluble lytic 94.7 3.2 0.00011 39.6 21.6 201 87-290 98-347 (618)
261 1ya0_A SMG-7 transcript varian 94.4 0.26 8.9E-06 45.6 10.5 73 96-168 157-229 (497)
262 4b4t_S RPN3, 26S proteasome re 94.0 2.6 9E-05 38.9 15.9 125 169-295 146-303 (523)
263 4b4t_R RPN7, 26S proteasome re 93.9 0.28 9.7E-06 44.7 9.6 97 160-256 132-239 (429)
264 3kae_A CDC27, possible protein 93.3 2.1 7.2E-05 32.8 19.3 99 88-191 30-146 (242)
265 1ya0_A SMG-7 transcript varian 93.1 0.88 3E-05 42.1 11.4 76 127-202 154-230 (497)
266 4b4t_S RPN3, 26S proteasome re 92.9 0.99 3.4E-05 41.6 11.2 122 100-223 145-301 (523)
267 4b4t_P 26S proteasome regulato 92.4 6.4 0.00022 35.9 25.9 166 88-255 53-248 (445)
268 3kae_A CDC27, possible protein 87.8 7.8 0.00027 29.7 20.0 180 104-294 15-240 (242)
269 4ady_A RPN2, 26S proteasome re 84.5 36 0.0012 34.2 15.8 190 92-289 414-621 (963)
270 3lvg_A Clathrin heavy chain 1; 82.3 0.014 4.9E-07 52.9 -8.0 252 94-362 173-476 (624)
271 2wpv_A GET4, UPF0363 protein Y 79.3 29 0.001 29.7 16.4 27 338-364 132-158 (312)
272 4gq2_M Nucleoporin NUP120; bet 77.5 47 0.0016 33.6 14.5 105 97-222 816-927 (950)
273 1wy6_A Hypothetical protein ST 73.4 25 0.00086 26.0 14.5 81 275-369 74-154 (172)
274 3ax2_A Mitochondrial import re 70.3 14 0.00047 23.8 5.5 27 131-157 23-49 (73)
275 3ax2_A Mitochondrial import re 68.4 16 0.00055 23.4 5.6 33 95-127 21-53 (73)
276 4ady_A RPN2, 26S proteasome re 66.6 1.1E+02 0.0038 30.8 17.9 189 92-290 456-657 (963)
277 4gq2_M Nucleoporin NUP120; bet 65.5 33 0.0011 34.8 10.2 110 80-203 829-947 (950)
278 1wy6_A Hypothetical protein ST 61.9 46 0.0016 24.6 14.3 63 226-291 92-154 (172)
279 3lxu_X Tripeptidyl-peptidase 2 60.6 1.3E+02 0.0044 31.6 13.2 64 178-241 1268-1333(1354)
280 3lpz_A GET4 (YOR164C homolog); 59.7 86 0.0029 27.1 26.4 80 269-353 194-295 (336)
281 3bu8_A Telomeric repeat-bindin 58.5 52 0.0018 26.2 7.8 67 107-173 88-162 (235)
282 1om2_A Protein (mitochondrial 54.0 22 0.00074 24.2 4.4 27 131-157 26-52 (95)
283 3lxu_X Tripeptidyl-peptidase 2 52.3 2.3E+02 0.0079 29.8 17.7 82 209-295 1266-1350(1354)
284 1om2_A Protein (mitochondrial 51.1 22 0.00076 24.1 4.1 30 95-124 24-53 (95)
285 2w2u_A Hypothetical P60 katani 50.9 16 0.00054 24.2 3.4 12 172-183 32-43 (83)
286 2w2u_A Hypothetical P60 katani 49.8 46 0.0016 21.9 5.5 18 102-119 30-47 (83)
287 2v6y_A AAA family ATPase, P60 48.9 18 0.0006 23.9 3.4 11 172-182 24-34 (83)
288 3bu8_A Telomeric repeat-bindin 48.7 90 0.0031 24.9 7.7 66 74-139 89-162 (235)
289 2cwy_A Hypothetical protein TT 45.5 68 0.0023 21.7 6.9 54 347-406 8-61 (94)
290 2ijq_A Hypothetical protein; s 44.3 1E+02 0.0035 23.3 8.1 58 347-407 39-98 (161)
291 4b4t_O 26S proteasome regulato 44.0 1.6E+02 0.0056 26.0 10.0 62 228-289 130-196 (393)
292 2ijq_A Hypothetical protein; s 42.8 1.1E+02 0.0037 23.2 8.3 57 98-154 39-104 (161)
293 3t5x_A PCI domain-containing p 42.5 65 0.0022 25.5 6.5 32 93-124 16-47 (203)
294 2br9_A 14-3-3E, 14-3-3 protein 41.3 1.4E+02 0.0049 24.2 14.5 161 128-290 8-201 (234)
295 3lvg_A Clathrin heavy chain 1; 40.6 2.3 7.9E-05 39.0 -2.6 145 88-237 196-362 (624)
296 2crb_A Nuclear receptor bindin 38.4 63 0.0022 21.7 4.6 26 127-152 17-42 (97)
297 3bqo_A Telomeric repeat-bindin 37.5 38 0.0013 26.6 4.1 42 132-173 124-165 (211)
298 3t5v_B Nuclear mRNA export pro 37.2 1E+02 0.0034 28.1 7.5 62 96-157 181-253 (455)
299 2rpa_A Katanin P60 ATPase-cont 37.2 35 0.0012 22.2 3.3 25 95-119 16-40 (78)
300 2dl1_A Spartin; SPG20, MIT, st 36.7 78 0.0027 22.3 5.2 39 65-118 11-49 (116)
301 3t5x_A PCI domain-containing p 36.0 1.1E+02 0.0037 24.1 6.8 30 128-157 17-46 (203)
302 3bqo_A Telomeric repeat-bindin 35.4 44 0.0015 26.3 4.1 40 165-204 123-163 (211)
303 2v6x_A Vacuolar protein sortin 32.8 44 0.0015 22.0 3.4 11 173-183 27-37 (85)
304 2cpt_A SKD1 protein, vacuolar 31.8 44 0.0015 23.7 3.4 12 206-217 32-43 (117)
305 1g1e_B SIN3A; four-helix bundl 31.1 1.2E+02 0.004 20.2 6.4 26 108-133 11-36 (89)
306 2rpa_A Katanin P60 ATPase-cont 30.1 63 0.0022 21.0 3.6 25 163-187 16-40 (78)
307 3t5v_B Nuclear mRNA export pro 29.9 3.2E+02 0.011 24.8 13.2 66 230-295 181-254 (455)
308 2crb_A Nuclear receptor bindin 29.1 99 0.0034 20.8 4.4 27 93-119 17-43 (97)
309 3lpz_A GET4 (YOR164C homolog); 28.8 2.8E+02 0.0097 23.9 18.1 112 232-363 42-159 (336)
310 3uzd_A 14-3-3 protein gamma; s 28.5 2.4E+02 0.0083 23.0 15.8 161 128-290 7-202 (248)
311 2cqq_A RSGI RUH-037, DNAJ homo 27.7 1.2E+02 0.0041 19.2 5.6 41 77-119 16-57 (72)
312 1g1e_B SIN3A; four-helix bundl 26.9 1.4E+02 0.0049 19.8 6.8 54 322-375 10-77 (89)
313 2npm_A 14-3-3 domain containin 25.6 2.8E+02 0.0097 22.8 16.0 158 128-290 31-226 (260)
314 2cfu_A SDSA1; SDS-hydrolase, l 24.9 1.3E+02 0.0045 28.8 6.5 51 124-174 448-498 (658)
315 3re2_A Predicted protein; meni 23.5 3.7E+02 0.013 23.5 9.6 44 144-187 276-324 (472)
316 1wgx_A KIAA1903 protein; MYB D 22.8 85 0.0029 20.1 3.2 42 77-119 16-58 (73)
317 2cfu_A SDSA1; SDS-hydrolase, l 21.2 1.8E+02 0.0061 27.9 6.6 48 160-207 450-498 (658)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-38 Score=292.45 Aligned_cols=343 Identities=15% Similarity=0.123 Sum_probs=302.3
Q ss_pred HHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015351 42 EQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD 121 (408)
Q Consensus 42 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (408)
.+.++++.+..|.......... ......+..++|...++++++.+|.++.+|..+|.++...|++++|+..|++++..+
T Consensus 19 ~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 97 (388)
T 1w3b_A 19 ERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4455666666655421111111 111122345679999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 015351 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIK 200 (408)
Q Consensus 122 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~ 200 (408)
|+++.+|..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|...|+++++..|+ ...|..++.
T Consensus 98 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 177 (388)
T 1w3b_A 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q 015351 201 FELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETE 279 (408)
Q Consensus 201 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 279 (408)
++...|++++|+..|+++++..|+ ...+..+|.++...|++++|...|++++...|+ ++.++..++.++...|+++
T Consensus 178 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999985 778999999999999999999999999999998 7889999999999999999
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 015351 280 RARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERA 359 (408)
Q Consensus 280 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A 359 (408)
+|+..|+++++..|.+ +..+..++.++...|+ +++|+..|++++..+|.++.+|..++.++...|++++|
T Consensus 255 ~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 255 LAIDTYRRAIELQPHF--PDAYCNLANALKEKGS--------VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHHHHHHHTCSSC--HHHHHHHHHHHHHHSC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999987 6789999999999999 66799999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 360 REVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 360 ~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+..|+++++..|++.. .+..++..+ ...|++++|++.|+
T Consensus 325 ~~~~~~al~~~p~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAA---------AHSNLASVL-QQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHTTSCTTCHH---------HHHHHHHHH-HTTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHH---------HHHHHHHHH-HHcCCHHHHHHHHH
Confidence 9999999999998875 566777777 48899999998763
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.7e-37 Score=284.26 Aligned_cols=314 Identities=16% Similarity=0.179 Sum_probs=299.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.+++|+..|+++++.+|+++.++..++.++...|++++|...++++++.+|.++.+|..+|.++...|++++|+..|++
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTW 228 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 228 (408)
++...|++..+|..+|.++...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..|+++++..|+ ...|
T Consensus 93 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999 889999999999999999999999999999985 7889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHH
Q 015351 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFE 308 (408)
Q Consensus 229 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 308 (408)
..++.++...|++++|...|+++++..|+ ....+..++.++...|++++|...|++++...|.+ ..++..++.++
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 247 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC--HHHHHHHHHHH
Confidence 99999999999999999999999999998 78999999999999999999999999999999987 78899999999
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 015351 309 KQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWIN 388 (408)
Q Consensus 309 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~ 388 (408)
...|+ +++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++..|++.. .|..
T Consensus 248 ~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~ 310 (388)
T 1w3b_A 248 YEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---------SLNN 310 (388)
T ss_dssp HHTTC--------HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---------HHHH
T ss_pred HHcCC--------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH---------HHHH
Confidence 99999 667999999999999999999999999999999999999999999999999875 5667
Q ss_pred HHHHhhhhcCChhHHhhhc
Q 015351 389 YALYEELDAGDMERTRDVY 407 (408)
Q Consensus 389 ~a~~~e~~~g~~~~A~~~~ 407 (408)
++.++ ...|++++|++.|
T Consensus 311 l~~~~-~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 311 LANIK-REQGNIEEAVRLY 328 (388)
T ss_dssp HHHHH-HTTTCHHHHHHHH
T ss_pred HHHHH-HHcCCHHHHHHHH
Confidence 77777 4899999999876
No 3
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.7e-34 Score=270.75 Aligned_cols=293 Identities=10% Similarity=0.014 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
.+++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++
T Consensus 41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCch---HHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHH
Q 015351 152 VTLLPRVD---QLWYKY------------IHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIY 215 (408)
Q Consensus 152 l~~~p~~~---~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~ 215 (408)
+...|++. .+|..+ |.++...|++++|+..|+++++..|. ..++..++.++...|++++|+.+|
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred HhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999988 777766 55589999999999999999999998 899999999999999999999999
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH------------HHHHHHcCChHHHH
Q 015351 216 ERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAF------------AEFEERCKETERAR 282 (408)
Q Consensus 216 ~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~A~ 282 (408)
+++++..| +..+|..++.++...|++++|+..|++++...|+ ....+..+ +..+...|++++|.
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999987 5788999999999999999999999999999998 55555554 89999999999999
Q ss_pred HHHHHHHhhCCCcch--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015351 283 CIYKFALDHIPKGRA--EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAR 360 (408)
Q Consensus 283 ~~~~~al~~~p~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 360 (408)
..|+++++..|.+.. ..++..++.++...|+ +++|+..|++++..+|+++.+|..+|.++...|++++|+
T Consensus 278 ~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 349 (450)
T 2y4t_A 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEK--------PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 349 (450)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999998632 3478888999999999 667999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchh
Q 015351 361 EVYERAIANVPPAEE 375 (408)
Q Consensus 361 ~~~~~al~~~p~~~~ 375 (408)
..|+++++..|+++.
T Consensus 350 ~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 350 QDYETAQEHNENDQQ 364 (450)
T ss_dssp HHHHHHHTTSSSCHH
T ss_pred HHHHHHHHhCcchHH
Confidence 999999999999886
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3.2e-33 Score=253.50 Aligned_cols=294 Identities=10% Similarity=-0.006 Sum_probs=272.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.+++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++
T Consensus 17 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC---CchHHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHH
Q 015351 151 AVTLLP---RVDQLWYKY------------IHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQI 214 (408)
Q Consensus 151 al~~~p---~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~ 214 (408)
++...| +++.++..+ +.++...|++++|+..|+++++..|. ..++..++.++...|++++|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999 888888877 68999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH------------HHHHHHHHcCChHHH
Q 015351 215 YERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFV------------AFAEFEERCKETERA 281 (408)
Q Consensus 215 ~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~~~~~~~~~A 281 (408)
|+++++..| +..++..+|.++...|++++|...|+++++..|+. ...+. ..|.++...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999998 57889999999999999999999999999999984 44333 348889999999999
Q ss_pred HHHHHHHHhhCCCcchH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 015351 282 RCIYKFALDHIPKGRAE--DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERA 359 (408)
Q Consensus 282 ~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A 359 (408)
...|+++++..|.+... .++..++.++...|+ +++|+..|++++..+|+++.+|..+|.++...|++++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK--------PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999986322 446678888999999 66799999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchh
Q 015351 360 REVYERAIANVPPAEE 375 (408)
Q Consensus 360 ~~~~~~al~~~p~~~~ 375 (408)
...|+++++..|+++.
T Consensus 326 ~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 326 IQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHhcCCCChH
Confidence 9999999999999886
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.2e-33 Score=264.91 Aligned_cols=310 Identities=12% Similarity=0.034 Sum_probs=275.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL 155 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 155 (408)
+...+.+++..+|.++..|..+|..+...|++++|+.+|++++..+|.++.+|..+|.++...|++++|+..|++++...
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 56777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-H---HHHHHH------------HHHHHHhhhHHHHHHHHHHHH
Q 015351 156 PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-Q---QGWLSY------------IKFELRYNEVERARQIYERFV 219 (408)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~---~~~~~~------------~~~~~~~~~~~~A~~~~~~al 219 (408)
|++..+|..+|.++...|++++|+..|+++++..|+ . ..|..+ +.++...|++++|+..|++++
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 5 776665 555888999999999999999
Q ss_pred HhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchH
Q 015351 220 QCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 298 (408)
Q Consensus 220 ~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 298 (408)
+..| +..++..++.++...|++++|+..|+++++..|. ++.+|..++.++...|++++|+..|++++...|.+ .
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~ 245 (450)
T 2y4t_A 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH--K 245 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H
T ss_pred HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh--H
Confidence 9998 5788999999999999999999999999999998 78999999999999999999999999999999987 4
Q ss_pred HHHHHH------------HHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHH
Q 015351 299 DLYRKF------------VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD----IWFDYIRLEESVGNKERAREV 362 (408)
Q Consensus 299 ~~~~~~------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~g~~~~A~~~ 362 (408)
..+..+ +..+...|+ +++|+..|++++...|+++. ++..+|.++...|++++|+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGR--------YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555444 777888888 66799999999999999854 788899999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 363 YERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 363 ~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
++++++..|+++. +|..++..+ ...|++++|+..|+
T Consensus 318 ~~~a~~~~p~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 318 CSEVLQMEPDNVN---------ALKDRAEAY-LIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHH---------HHHHHHHHH-HHhcCHHHHHHHHH
Confidence 9999999998875 677788888 48999999998763
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.5e-32 Score=249.14 Aligned_cols=296 Identities=12% Similarity=0.036 Sum_probs=271.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 169 (408)
++..|..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++...|+++.+|..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCC---C-HHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHH
Q 015351 170 EMLGNVAGARQIFERWMHWMP---D-QQGWLSY------------IKFELRYNEVERARQIYERFVQCHP-KVSTWIKYA 232 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p---~-~~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a 232 (408)
...|++++|+..|+++++..| + ..++..+ +.++...|++++|+.+|+++++..| +..++..++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 6 6777666 6888899999999999999999998 578899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHH----------
Q 015351 233 KFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYR---------- 302 (408)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---------- 302 (408)
.++...|++++|...++++++..|. ++.++..+|.++...|++++|...|+++++..|.+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc--hHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 78999999999999999999999999999999987 33333
Q ss_pred --HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 303 --KFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI----WFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 303 --~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
..+..+...|+ +++|...|++++..+|+++.. +..+|.++...|++++|+..|+++++..|+++.
T Consensus 237 ~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 307 (359)
T 3ieg_A 237 LIESAEELIRDGR--------YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN- 307 (359)
T ss_dssp HHHHHHHHHHTTC--------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred HHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH-
Confidence 23666778888 667999999999999998754 667899999999999999999999999999875
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 377 RYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 377 ~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+|..+|.++ ...|++++|...|+
T Consensus 308 --------~~~~~~~~~-~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 308 --------ALKDRAEAY-LIEEMYDEAIQDYE 330 (359)
T ss_dssp --------HHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred --------HHHHHHHHH-HHcCCHHHHHHHHH
Confidence 677788888 48999999998763
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.6e-33 Score=247.94 Aligned_cols=301 Identities=14% Similarity=0.058 Sum_probs=270.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchH
Q 015351 81 EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ 160 (408)
Q Consensus 81 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (408)
...+...|.++..+..+|..+...|++++|+.+|+++++.+|.+..++..++.++...|++++|+..+++++..+|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH
Confidence 45567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Q 015351 161 LWYKYIHMEEMLG-NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMK 237 (408)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~ 237 (408)
+|..+|.++...| ++++|+..|+++++..|. ..+|..++.++...|++++|+..|+++++..|+ ...+..+|.++..
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999998 899999999999999999999999999999985 6788889999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------cchHHHHHHHHHHHHH
Q 015351 238 MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK-------GRAEDLYRKFVAFEKQ 310 (408)
Q Consensus 238 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~ 310 (408)
.|++++|...|+++++..|. ++.++..+|.++...|++++|...|+++++..|. .....++..++.++..
T Consensus 172 ~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPE---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999998 7899999999999999999999999999987521 1125789999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 015351 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYA 390 (408)
Q Consensus 311 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a 390 (408)
.|+ +++|+..|++++..+|+++.+|..+|.++...|++++|...|+++++..|+++. .+..++
T Consensus 249 ~g~--------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~ 311 (330)
T 3hym_B 249 LKK--------YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF---------SVTMLG 311 (330)
T ss_dssp TTC--------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH---------HHHHHH
T ss_pred hcC--------HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH---------HHHHHH
Confidence 999 667999999999999999999999999999999999999999999999999886 455566
Q ss_pred HHhhhhcCChh
Q 015351 391 LYEELDAGDME 401 (408)
Q Consensus 391 ~~~e~~~g~~~ 401 (408)
..++...|+.+
T Consensus 312 ~~~~~~~g~~~ 322 (330)
T 3hym_B 312 HCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTTTC--
T ss_pred HHHHHHhCchh
Confidence 65544667655
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-32 Score=262.52 Aligned_cols=293 Identities=11% Similarity=0.028 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 70 ADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
.+..++|+.+|+++++. |.++.+|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|..+|+
T Consensus 285 ~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 35668899999999887 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHH
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVST 227 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 227 (408)
+++...|++..+|..++.++...|++++|..+|+++++..|. ...|..++.++...|++++|+.+|+++++..| +..+
T Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (597)
T 2xpi_A 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443 (597)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 999999999999999999999999999999999999999998 88999999999999999999999999999988 5788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCcchHHHH
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI------PKGRAEDLY 301 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~ 301 (408)
|..++.++...|++++|.++|+++++..|. ++.+|..++.++.+.|++++|...|+++++.. |.+ ...+|
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-~~~~~ 519 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-WAATW 519 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-GHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-HHHHH
Confidence 999999999999999999999999999998 78999999999999999999999999999873 332 26899
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 302 RKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
..++.++...|+ +++|+..|++++..+|+++.+|..++.++...|++++|...|+++++..|+++.
T Consensus 520 ~~l~~~~~~~g~--------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 520 ANLGHAYRKLKM--------YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHHHHHTTC--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 999999999999 667999999999999999999999999999999999999999999999999986
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=267.51 Aligned_cols=314 Identities=11% Similarity=0.080 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHH--------------------------------------HHHHccCHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAK--------------------------------------WEESQKDFNRARS 112 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~--------------------------------------~~~~~g~~~~A~~ 112 (408)
+..++|+..|+++++.+|.+..+|..++. .+...|++++|+.
T Consensus 214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 44678999999999999999999887754 3346789999999
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-
Q 015351 113 VWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD- 191 (408)
Q Consensus 113 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 191 (408)
+|++++.. |.++.+|..++.++...|++++|+.+|++++...|++..+|..++.++...|++++|..+++++++..|+
T Consensus 294 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (597)
T 2xpi_A 294 YLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372 (597)
T ss_dssp HHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc
Confidence 99999987 7899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 270 (408)
..+|..++.++...|++++|+.+|+++++..|. ...|..++.++...|++++|+++|+++++..|+ +..+|..++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~ 449 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG---THLPYLFLGM 449 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHH
Confidence 899999999999999999999999999999884 779999999999999999999999999999998 6899999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhh------CCCC-HHHH
Q 015351 271 FEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRK------NPMN-YDIW 343 (408)
Q Consensus 271 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~ 343 (408)
++...|++++|..+|+++++..|.+ ...|..++.++...|+ +++|...|++++.. +|++ ..+|
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYD--PLLLNELGVVAFNKSD--------MQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 9999999999999999999999987 7889999999999999 66799999999998 6664 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 344 FDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 344 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
..+|.++...|++++|+..|+++++..|+++. .|..++..+ ...|++++|.+.|+
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN---------VHTAIALVY-LHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH---------HHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHhCCHHHHHHHHH
Confidence 99999999999999999999999999998875 577778887 48999999998773
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=8.1e-33 Score=265.11 Aligned_cols=313 Identities=11% Similarity=0.094 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHH----
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVW---- 148 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~---- 148 (408)
+++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|
T Consensus 41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 120 (537)
T 3fp2_A 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120 (537)
T ss_dssp CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999999999999999999999999999999988888877776654
Q ss_pred --------------------------------------------------------------------------------
Q 015351 149 -------------------------------------------------------------------------------- 148 (408)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (408)
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (537)
T 3fp2_A 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDAL 200 (537)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHH
Confidence
Q ss_pred -------------------------HHHHHhCCCchH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 015351 149 -------------------------DRAVTLLPRVDQ-------LWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWL 196 (408)
Q Consensus 149 -------------------------~~al~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 196 (408)
++++...|+++. ++..+|.++...|++++|+..|+++++..|+...|.
T Consensus 201 ~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 280 (537)
T 3fp2_A 201 QRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI 280 (537)
T ss_dssp HHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHH
Confidence 334445566543 466777888889999999999999999999988899
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q 015351 197 SYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC 275 (408)
Q Consensus 197 ~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 275 (408)
.++.++...|++++|+..|+++++..|+ ..++..+|.++...|++++|...|+++++..|. ++.+|..++.++...
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE---NVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc
Confidence 9999999999999999999999999984 788999999999999999999999999999998 678999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHH------HHHHHHH
Q 015351 276 KETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDI------WFDYIRL 349 (408)
Q Consensus 276 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~~~~~ 349 (408)
|++++|...|+++++..|.+ ..++..++.++...|+ +++|+..|++++..+|++... +...+.+
T Consensus 358 g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGD--------FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999987 6788889999999999 667999999999988765543 5566788
Q ss_pred HHHc----------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 350 EESV----------GNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 350 ~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+... |++++|+..|+++++..|+++. ++..++.++ ...|++++|++.|+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ---------AKIGLAQLK-LQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH-HHhccHHHHHHHHH
Confidence 8888 9999999999999999999885 577788888 48999999998763
No 11
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=1.9e-32 Score=262.19 Aligned_cols=325 Identities=20% Similarity=0.322 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHH-HhccCHHHHHH---
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVE-MKNKFINHARN--- 146 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~--- 146 (408)
+..++|+.+|+++++.+|.+..+|..++.++...|++++|+.+|++++..+| ++.+|..++.+. ...|+++.|++
T Consensus 26 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 3456799999999999999999999999999999999999999999999999 688999988644 34566655554
Q ss_pred -HHHHHHHh---CCCchHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHh-----
Q 015351 147 -VWDRAVTL---LPRVDQLWYKYIHMEEM---------LGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRY----- 205 (408)
Q Consensus 147 -~~~~al~~---~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~----- 205 (408)
+|++++.. +|.+..+|..++.++.. .|+++.|+.+|+++++ .|. ..+|..+..+....
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHH
Confidence 77777764 34567788888877765 6777778888888777 344 34454433321100
Q ss_pred --------h--------------------------------------------------------h----HHHHHHHHHH
Q 015351 206 --------N--------------------------------------------------------E----VERARQIYER 217 (408)
Q Consensus 206 --------~--------------------------------------------------------~----~~~A~~~~~~ 217 (408)
+ + ..+++.+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 0 0 1245566777
Q ss_pred HHHhCC-ChHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHcCChHHH
Q 015351 218 FVQCHP-KVSTWIKYAKFEMK-------MGEVD-------RARNVYERAVE-KLADDEEAEQLFVAFAEFEERCKETERA 281 (408)
Q Consensus 218 al~~~p-~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~A 281 (408)
++..+| ++.+|+.++.++.. .|+++ +|+.+|+++++ ..|+ +..+|..++.++...|++++|
T Consensus 264 al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~---~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 264 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHH
Confidence 777776 46777777777765 57765 77788888876 5676 677788888877777888888
Q ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHH---------------------------HHHHHHHHHHHHHh
Q 015351 282 RCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA---------------------------IVGKRRFQYEDEVR 334 (408)
Q Consensus 282 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------------~~~~A~~~~~~al~ 334 (408)
+.+|+++++..|.+ ...+|..++.++...|+.+.+... ..++|+.+|+++++
T Consensus 341 ~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 341 HSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHHSSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 88888887766654 124677777766655543332211 04578888999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 335 KNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 335 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
.+|+++.+|..++.++...|+.++|+.+|++++...|.++.. ...+|..|+.|+. ..|+.+.+.+++
T Consensus 420 ~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~-----~~~lw~~~~~~e~-~~G~~~~~~~~~ 486 (530)
T 2ooe_A 420 KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-----SGEIWARFLAFES-NIGDLASILKVE 486 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG-----CHHHHHHHHHHHH-HSSCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 999999999999999988999999999999999887766531 1247889999884 889998888765
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=260.27 Aligned_cols=315 Identities=13% Similarity=0.096 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC--------------------------
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN-------------------------- 124 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------- 124 (408)
+.+++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++..+|.+
T Consensus 53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (514)
T 2gw1_A 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888888888888888888888888888888888776532
Q ss_pred -----------------------------------------------------hHHHHHHHHHHHh---ccCHHHHHHHH
Q 015351 125 -----------------------------------------------------HTLWLKYAEVEMK---NKFINHARNVW 148 (408)
Q Consensus 125 -----------------------------------------------------~~~~~~~a~~~~~---~~~~~~A~~~~ 148 (408)
...+...|..... .|++++|+..|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 5566666666665 78888888888
Q ss_pred HHHHH-----h--C-------CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 015351 149 DRAVT-----L--L-------PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQI 214 (408)
Q Consensus 149 ~~al~-----~--~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~ 214 (408)
++++. . . |....+|..+|.++...|++++|...|+++++..|...++..++.++...|++++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888 4 3 44467888888889999999999999999998888877888888888889999999999
Q ss_pred HHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 015351 215 YERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP 293 (408)
Q Consensus 215 ~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 293 (408)
|++++...| +..++..++.++...|++++|...|+++++..|. +..++..++.++...|++++|...|+++++..|
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE---NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 999998887 4678888999999999999999999999998888 678899999999999999999999999999888
Q ss_pred CcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHH
Q 015351 294 KGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD------IWFDYIRLEES---VGNKERAREVYE 364 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~---~g~~~~A~~~~~ 364 (408)
.+ ..++..++.++...|+ +++|...|++++..+|.++. +|..+|.++.. .|++++|+..|+
T Consensus 370 ~~--~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 370 EA--PEVPNFFAEILTDKND--------FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp TC--SHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 86 5788888888888898 66799999999999888755 99999999999 999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 365 RAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 365 ~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
+++...|+++. .+..++.++ ...|++++|...|+
T Consensus 440 ~a~~~~~~~~~---------~~~~la~~~-~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 440 KASKLDPRSEQ---------AKIGLAQMK-LQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHhCcccHH---------HHHHHHHHH-HHhcCHHHHHHHHH
Confidence 99999998875 567778888 48999999998763
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=1.2e-31 Score=244.44 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=259.5
Q ss_pred HHHHHHHH-HHHHHHHhcCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHH
Q 015351 71 DYRLRKRK-EFEDLIRRVRWNT----GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHAR 145 (408)
Q Consensus 71 ~~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~ 145 (408)
+.+++|.. .|++++...|.++ ..|+.+|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 34567888 9999988888774 569999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHH----------------HHHHHHHHhhhH
Q 015351 146 NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWL----------------SYIKFELRYNEV 208 (408)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~----------------~~~~~~~~~~~~ 208 (408)
..|++++...|+++.+|..+|.++...|++++|+..|+++++..|. ...+. .++.++ ..|++
T Consensus 119 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 197 (368)
T 1fch_A 119 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF 197 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH
Confidence 9999999999999999999999999999999999999999999998 44443 355555 89999
Q ss_pred HHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 015351 209 ERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIY 285 (408)
Q Consensus 209 ~~A~~~~~~al~~~p~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 285 (408)
++|+.+|+++++..|+ ..++..+|.++...|++++|+..|++++...|+ ++.+|..+|.++...|++++|+..|
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---DYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999986 678999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHcC
Q 015351 286 KFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN-----------YDIWFDYIRLEESVG 354 (408)
Q Consensus 286 ~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~~~~~~~~g 354 (408)
+++++..|.+ ...+..++.++...|+ +++|+..|++++...|++ ..+|..++.++...|
T Consensus 275 ~~al~~~~~~--~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 275 RRALELQPGY--IRSRYNLGISCINLGA--------HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHCTTC--HHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCc--HHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 9999999987 7899999999999999 667999999999999988 899999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 015351 355 NKERAREVYERAIAN 369 (408)
Q Consensus 355 ~~~~A~~~~~~al~~ 369 (408)
++++|..++++++..
T Consensus 345 ~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 345 QSDAYGAADARDLST 359 (368)
T ss_dssp CGGGHHHHHTTCHHH
T ss_pred ChHhHHHhHHHHHHH
Confidence 999999999988764
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=253.93 Aligned_cols=318 Identities=10% Similarity=0.013 Sum_probs=284.8
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
.++.|+..|++++..+| ++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++
T Consensus 21 ~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34679999999999999 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCc-------------------------------------------------------------------------
Q 015351 152 VTLLPRV------------------------------------------------------------------------- 158 (408)
Q Consensus 152 l~~~p~~------------------------------------------------------------------------- 158 (408)
+...|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 100 SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp HHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSS
T ss_pred HhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHH
Confidence 9887632
Q ss_pred ------hHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----h--C-------CC-HHHHHHHHHHHHHhhhHHHHHHH
Q 015351 159 ------DQLWYKYIHMEEM---LGNVAGARQIFERWMH-----W--M-------PD-QQGWLSYIKFELRYNEVERARQI 214 (408)
Q Consensus 159 ------~~~~~~~~~~~~~---~~~~~~A~~~~~~al~-----~--~-------p~-~~~~~~~~~~~~~~~~~~~A~~~ 214 (408)
...+...+..+.. .|++++|+..|+++++ . . |. ..+|..++.++...|++++|+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 259 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5666777777665 8999999999999999 5 3 33 67889999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 015351 215 YERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294 (408)
Q Consensus 215 ~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 294 (408)
|+++++..|+..++..++.++...|++++|...+++++...|. ++.++..++.++...|++++|...|+++++..|.
T Consensus 260 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 260 IKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN---NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred HHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 9999999988777999999999999999999999999999998 6889999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 015351 295 GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
+ ...+..++.++...|+ +++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++...|.++
T Consensus 337 ~--~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 337 N--IFPYIQLACLAYRENK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp C--SHHHHHHHHHTTTTTC--------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred h--HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 7 5788889999999998 66799999999999999999999999999999999999999999999888875
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh---cCChhHHhhhc
Q 015351 375 EKRYWQRYIYLWINYALYEELD---AGDMERTRDVY 407 (408)
Q Consensus 375 ~~~~w~~~~~l~~~~a~~~e~~---~g~~~~A~~~~ 407 (408)
.... ....|..++..+ .. .|++++|+..|
T Consensus 407 ~~~~---~~~~~~~l~~~~-~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 407 GIYV---GIAPLVGKATLL-TRNPTVENFIEATNLL 438 (514)
T ss_dssp SCSS---CSHHHHHHHHHH-HTSCCTTHHHHHHHHH
T ss_pred hHHH---HHHHHHHHHHHH-hhhhhcCCHHHHHHHH
Confidence 3100 011466677777 47 89999998876
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.4e-31 Score=234.63 Aligned_cols=277 Identities=13% Similarity=0.031 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc-CHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK-FINHARNVWD 149 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~ 149 (408)
+.++.|+..|+++++.+|.+...+..++.++...|++++|...++++++.+|.++.+|..+|.++...| ++++|+..|+
T Consensus 36 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345679999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHH
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VST 227 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 227 (408)
+++...|+++.+|..+|.++...|++++|+..|+++++..|. ...+..++.++...|++++|+..|+++++..|+ ..+
T Consensus 116 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 195 (330)
T 3hym_B 116 KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195 (330)
T ss_dssp HHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999999999999999999999999999998 888999999999999999999999999999984 788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHH
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADD------EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLY 301 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 301 (408)
+..+|.++...|++++|...++++++..|.. +..+.++..+|.++...|++++|...|+++++..|.+ ..++
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~ 273 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN--ASTY 273 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--SHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc--hHHH
Confidence 9999999999999999999999999987320 1157899999999999999999999999999999987 6789
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHH
Q 015351 302 RKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLE-ESVGNKE 357 (408)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~g~~~ 357 (408)
..++.++...|+ +++|...|+++++.+|+++.++..++.++ ...|+.+
T Consensus 274 ~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 274 SAIGYIHSLMGN--------FENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHTC--------HHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhcc--------HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999 66799999999999999999999999988 4556543
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=5.7e-31 Score=239.97 Aligned_cols=280 Identities=12% Similarity=0.021 Sum_probs=244.8
Q ss_pred HHHHHHHHHhcCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 77 RKEFEDLIRRVRWNT----GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 77 ~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
...+...+...|.++ ..|+.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555555444 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH----------HHHHHHhhhHHHHHHHHHHHHHh
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY----------IKFELRYNEVERARQIYERFVQC 221 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~----------~~~~~~~~~~~~A~~~~~~al~~ 221 (408)
..+|++..+|..+|.++...|++++|+..|+++++..|+ ...+..+ +.++...|++++|+.+|+++++.
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987 5555444 88999999999999999999999
Q ss_pred CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchH
Q 015351 222 HPK---VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE 298 (408)
Q Consensus 222 ~p~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 298 (408)
.|+ +.++..+|.++...|++++|+..|+++++..|+ ++.+|..+|.++...|++++|+..|+++++..|.+ .
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~ 281 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE---DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--I 281 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--h
Confidence 985 678999999999999999999999999999998 78999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015351 299 DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM------------NYDIWFDYIRLEESVGNKERAREVYERA 366 (408)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a 366 (408)
..+..++.++...|+ +++|+..|++++..+|+ +..+|..++.++...|+.+.+..+.++.
T Consensus 282 ~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 282 RSRYNLGISCINLGA--------YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHTC--------CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 899999999999999 55699999999999887 3678999999999999999998887775
Q ss_pred Hhc
Q 015351 367 IAN 369 (408)
Q Consensus 367 l~~ 369 (408)
+..
T Consensus 354 l~~ 356 (365)
T 4eqf_A 354 LDV 356 (365)
T ss_dssp CGG
T ss_pred HHH
Confidence 443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=1.5e-29 Score=242.12 Aligned_cols=313 Identities=17% Similarity=0.299 Sum_probs=253.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc
Q 015351 79 EFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV 158 (408)
Q Consensus 79 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (408)
+|+++++.+|.+..+|..++.. ...|++++|+.+|+++++.+|.+..+|..++.++...|++++|+.+|++++...| +
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~ 78 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H 78 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence 4788999999999999999995 7899999999999999999999999999999999999999999999999999999 5
Q ss_pred hHHHHHHHHHH-HHcCChHHHHH----HHHHHHHh---CCC-HHHHHHHHHHHHH---------hhhHHHHHHHHHHHHH
Q 015351 159 DQLWYKYIHME-EMLGNVAGARQ----IFERWMHW---MPD-QQGWLSYIKFELR---------YNEVERARQIYERFVQ 220 (408)
Q Consensus 159 ~~~~~~~~~~~-~~~~~~~~A~~----~~~~al~~---~p~-~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~ 220 (408)
..+|..++.+. ...|+++.|++ +|++++.. +|. ..+|..++.++.. .|+++.|+.+|+++++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 77999999755 45688877765 88888875 334 8899999998876 7999999999999998
Q ss_pred hCCC---hHHHHHHHHHH--------------------------------------------------------------
Q 015351 221 CHPK---VSTWIKYAKFE-------------------------------------------------------------- 235 (408)
Q Consensus 221 ~~p~---~~~~~~~a~~~-------------------------------------------------------------- 235 (408)
.|. ..+|..++.+.
T Consensus 159 -~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 159 -NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp -SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 453 23444332221
Q ss_pred ---HHc----CCH----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHh
Q 015351 236 ---MKM----GEV----DRARNVYERAVEKLADDEEAEQLFVAFAEFEER-------CKETE-------RARCIYKFALD 290 (408)
Q Consensus 236 ---~~~----~~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~al~ 290 (408)
... ++. ..+..+|++++...|. ++.+|..++.++.. .|+++ +|+.+|+++++
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~---~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 010 111 2567789999999998 79999999999986 79987 99999999997
Q ss_pred -hCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015351 291 -HIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNY-DIWFDYIRLEESVGNKERAREVYERAIA 368 (408)
Q Consensus 291 -~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~ 368 (408)
..|.+ ..+|..++.++...|+ +++|+.+|++++..+|.++ .+|..++.++.+.|+.++|+.+|++|++
T Consensus 315 ~~~p~~--~~l~~~~~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 315 TLLKKN--MLLYFAYADYEESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp TTCSSC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCccc--HHHHHHHHHHHHhcCC--------HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 78887 7899999999999998 6678889999999888885 5888888888777777788888888777
Q ss_pred cCCCchhHHHHHHH--------------------------HHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 369 NVPPAEEKRYWQRY--------------------------IYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 369 ~~p~~~~~~~w~~~--------------------------~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
..|......++..+ ..+|..|+.++ ...|++++|+.+|+
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~-~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL-SHLNEDNNTRVLFE 449 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTTTCHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH-HhCCCHhhHHHHHH
Confidence 66654332111111 13678888887 47888888888763
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.5e-30 Score=246.00 Aligned_cols=324 Identities=11% Similarity=0.049 Sum_probs=273.6
Q ss_pred CHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHH-----
Q 015351 40 TAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVW----- 114 (408)
Q Consensus 40 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~----- 114 (408)
.+...++++++..|.........+..+.. .+.+++|+..|+++++.+|+++.+|..+|.++...|++++|+..|
T Consensus 43 ~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 121 (537)
T 3fp2_A 43 EAIKYYQYAIELDPNEPVFYSNISACYIS-TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL 121 (537)
T ss_dssp -CHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45667777877776543222222222222 345688999999999999999999999999999988877776644
Q ss_pred --------------------------------------------------------------------------------
Q 015351 115 -------------------------------------------------------------------------------- 114 (408)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (408)
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 201 (537)
T 3fp2_A 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQ 201 (537)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHH
Confidence
Q ss_pred ------------------------HHHHhccCCChH-------HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHH
Q 015351 115 ------------------------ERALEVDYRNHT-------LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWY 163 (408)
Q Consensus 115 ------------------------~~al~~~p~~~~-------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (408)
+++++.+|+++. ++..+|.++...|++++|+..|++++...|+ ..+|.
T Consensus 202 ~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 280 (537)
T 3fp2_A 202 RLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYI 280 (537)
T ss_dssp HHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHH
Confidence 444456677654 4667778888999999999999999999999 99999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCH
Q 015351 164 KYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV 241 (408)
Q Consensus 164 ~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~ 241 (408)
.+|.++...|++++|+..|+++++..|+ ..+|..++.++...|++++|+..|+++++..|+ ..++..+|.++...|++
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999 999999999999999999999999999999984 78899999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc----hHHHHHHHHHHHHHc------
Q 015351 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR----AEDLYRKFVAFEKQY------ 311 (408)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~------ 311 (408)
++|...|+++++..|. ++.++..+|.++...|++++|...|+++++..|.+. ....+...+.++...
T Consensus 361 ~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 361 TESEAFFNETKLKFPT---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp HHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999999998 788999999999999999999999999998766542 122344555666666
Q ss_pred ----CCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 312 ----GDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 312 ----g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
|+ +++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++..|+.++.
T Consensus 438 ~~~~~~--------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 438 QLDEEK--------FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp -CCHHH--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred hhhHhH--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 65 6779999999999999999999999999999999999999999999999998864
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.98 E-value=2.3e-30 Score=236.00 Aligned_cols=295 Identities=12% Similarity=0.068 Sum_probs=250.5
Q ss_pred HHHccCHHHHHH-HHHHHHhccCCCh----HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh
Q 015351 101 EESQKDFNRARS-VWERALEVDYRNH----TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNV 175 (408)
Q Consensus 101 ~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 175 (408)
+...|++++|+. .|++++...|.++ ..|+.+|.++...|++++|+..|++++...|+++.+|..+|.++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344589999999 9999999988874 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh-HHHH----------------HHHHHHHH
Q 015351 176 AGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV-STWI----------------KYAKFEMK 237 (408)
Q Consensus 176 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~----------------~~a~~~~~ 237 (408)
++|+..|+++++..|+ ..+|..++.++...|++++|+..|++++...|.. ..+. .++.++ .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 9999999999999998 9999999999999999999999999999998853 3322 355555 8
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhH
Q 015351 238 MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGI 317 (408)
Q Consensus 238 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~ 317 (408)
.|++++|+..|+++++..|... .+.++..+|.++...|++++|+..|++++...|.+ ..++..++.++...|+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~---- 266 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQ---- 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC----
T ss_pred cccHHHHHHHHHHHHHhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCC----
Confidence 9999999999999999988722 37889999999999999999999999999999987 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH--HHHHHHHHHHHHHHhhh
Q 015351 318 EDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRY--WQRYIYLWINYALYEEL 395 (408)
Q Consensus 318 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--w~~~~~l~~~~a~~~e~ 395 (408)
+++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++..|++..... -.....+|..++..+ .
T Consensus 267 ----~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 341 (368)
T 1fch_A 267 ----SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL-S 341 (368)
T ss_dssp ----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH-H
T ss_pred ----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH-H
Confidence 667999999999999999999999999999999999999999999999887721000 000012677788888 4
Q ss_pred hcCChhHHhhhcC
Q 015351 396 DAGDMERTRDVYQ 408 (408)
Q Consensus 396 ~~g~~~~A~~~~~ 408 (408)
..|++++|..+++
T Consensus 342 ~~g~~~~A~~~~~ 354 (368)
T 1fch_A 342 MLGQSDAYGAADA 354 (368)
T ss_dssp HHTCGGGHHHHHT
T ss_pred HhCChHhHHHhHH
Confidence 8999999988763
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=7.6e-30 Score=228.38 Aligned_cols=271 Identities=14% Similarity=0.067 Sum_probs=248.9
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 169 (408)
+...|+.+|..+...|++++|+.+|+++++.+|.++.+|..+|.++...|++++|+..|++++...|++..+|..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCC-HHHHHHH--------------HH-HHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHH
Q 015351 170 EMLGNVAGARQIFERWMHWMPD-QQGWLSY--------------IK-FELRYNEVERARQIYERFVQCHP-KVSTWIKYA 232 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------------~~-~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a 232 (408)
...|++++|+..|+++++..|. ...+..+ +. ++...|++++|+.+++++++..| +..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 9999999999999999999998 6666655 55 57788999999999999999998 478899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcC
Q 015351 233 KFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYG 312 (408)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g 312 (408)
.++...|++++|...++++++..|+ ++.+|..+|.++...|++++|...|+++++..|.+ ...+..++.++...|
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD---DAQLWNKLGATLANGNRPQEALDAYNRALDINPGY--VRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhc
Confidence 9999999999999999999999998 78999999999999999999999999999999987 788999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 015351 313 DREGIEDAIVGKRRFQYEDEVRKNPM------------NYDIWFDYIRLEESVGNKERAREVYERAIANVPPA 373 (408)
Q Consensus 313 ~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 373 (408)
+ +++|+..|++++...|. ++.+|..++.++...|++++|..++++++...|++
T Consensus 255 ~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 255 Q--------YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp C--------HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred c--------HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9 66799999999999999 78999999999999999999999999988766543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.1e-29 Score=231.52 Aligned_cols=284 Identities=12% Similarity=0.049 Sum_probs=236.3
Q ss_pred HHHHHHHhccCCCh----HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 112 SVWERALEVDYRNH----TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 112 ~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
..+.+++...|.++ ..|+.+|..+...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555555555544 55999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 015351 188 WMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTW----------IKYAKFEMKMGEVDRARNVYERAVEKL 255 (408)
Q Consensus 188 ~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~----------~~~a~~~~~~~~~~~A~~~~~~al~~~ 255 (408)
..|+ ..+|..++.++...|++++|+.+|+++++..|+ ...+ ..++.++...|++++|+..|+++++..
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 9999 999999999999999999999999999999874 2233 345889999999999999999999998
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhh
Q 015351 256 ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRK 335 (408)
Q Consensus 256 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 335 (408)
|... ++.++..+|.++...|++++|+..|+++++..|.+ ..+|..++.++...|+ +++|+..|++++..
T Consensus 208 p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 208 GDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED--YSLWNRLGATLANGDR--------SEEAVEAYTRALEI 276 (365)
T ss_dssp CSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred cCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhc
Confidence 8721 37789999999999999999999999999999987 7899999999999999 66799999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH---HHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 336 NPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRY---WQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 336 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
+|+++.+|..+|.++...|++++|+..|+++++..|.+..... -.....+|..++..+ ...|+.+.|.++.
T Consensus 277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL-SLMDQPELFQAAN 350 (365)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH-HHHTCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH-HHcCcHHHHHHHH
Confidence 9999999999999999999999999999999999887533100 000123677777777 3789988887654
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=2.6e-29 Score=228.17 Aligned_cols=264 Identities=13% Similarity=0.066 Sum_probs=238.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccC-HHHHHHHHHHHHHhCCCchHH
Q 015351 83 LIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF-INHARNVWDRAVTLLPRVDQL 161 (408)
Q Consensus 83 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~ 161 (408)
++..+|.+..+|..++.++...|++++|+..|++++..+|++..+|..+|.++...|+ +++|+..|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4567888899999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH-c
Q 015351 162 WYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMK-M 238 (408)
Q Consensus 162 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~-~ 238 (408)
|..+|.++...|++++|+..|+++++++|+ ..+|..++.++...|++++|+..|+++++.+| +..+|..+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 99999999999999999999999999999999 57899999999999 5
Q ss_pred CCHHHH-----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHc
Q 015351 239 GEVDRA-----RNVYERAVEKLADDEEAEQLFVAFAEFEERCK--ETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 311 (408)
Q Consensus 239 ~~~~~A-----~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 311 (408)
|..++| +..|++++...|+ +..+|..++.++...| ++++|...+.++ +..|++ ..++..++.++...
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~---~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~--~~al~~La~~~~~~ 322 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPH---NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS--PYLIAFLVDIYEDM 322 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC--HHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC--HHHHHHHHHHHHHH
Confidence 665888 5999999999999 7899999999999888 699999999988 777776 67888888888876
Q ss_pred CCch--hHHHHHHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHc
Q 015351 312 GDRE--GIEDAIVGKRRFQYEDE-VRKNPMNYDIWFDYIRLEESV 353 (408)
Q Consensus 312 g~~~--~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~ 353 (408)
|+.. ...+ .+++|+.+|+++ ++.+|.....|..++..+...
T Consensus 323 ~~~~~~~~~~-~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 323 LENQCDNKED-ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHTTCSSHHH-HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcccccchHH-HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 5210 0000 146799999999 999999999999999887643
No 23
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.97 E-value=4.1e-28 Score=234.03 Aligned_cols=355 Identities=15% Similarity=0.228 Sum_probs=265.6
Q ss_pred HHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC---HHHHHHHHHHH
Q 015351 41 AEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKD---FNRARSVWERA 117 (408)
Q Consensus 41 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a 117 (408)
....+.+++..+|.+...|...+.. .+..+..+.++.+|++++...|.+...|..|+....+.|+ ++.+..+|+++
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~-~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKH-HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 3456788888887665444433321 2222345679999999999999999999999999999999 99999999999
Q ss_pred HhccC--CChHHHHHHHHHHHhccCH--------HHHHHHHHHHHHh----CCCchHHHHHHHHHHHH---------cCC
Q 015351 118 LEVDY--RNHTLWLKYAEVEMKNKFI--------NHARNVWDRAVTL----LPRVDQLWYKYIHMEEM---------LGN 174 (408)
Q Consensus 118 l~~~p--~~~~~~~~~a~~~~~~~~~--------~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---------~~~ 174 (408)
+...| .++.+|..|+.+....++. +....+|++|+.. ++.+..+|..++.+... +++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 99984 7889999999988776653 4456899999975 56678899999988653 345
Q ss_pred hHHHHHHHHHHHHhCCC---HHHH--------------------------------------------------------
Q 015351 175 VAGARQIFERWMHWMPD---QQGW-------------------------------------------------------- 195 (408)
Q Consensus 175 ~~~A~~~~~~al~~~p~---~~~~-------------------------------------------------------- 195 (408)
.+.++.+|++++.. |. ..+|
T Consensus 210 ~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 67788888888753 32 3333
Q ss_pred -----------------HHHHHHHHHhh-------hHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHH-HHHH
Q 015351 196 -----------------LSYIKFELRYN-------EVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRAR-NVYE 249 (408)
Q Consensus 196 -----------------~~~~~~~~~~~-------~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~-~~~~ 249 (408)
..++.++...+ ..++...+|++++..+| .+.+|+.++.++...|+.++|+ .+|+
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33333333321 13345678999999998 5889999999999999999997 9999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----------CCc---------chHHHHHHHHHHHH
Q 015351 250 RAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI-----------PKG---------RAEDLYRKFVAFEK 309 (408)
Q Consensus 250 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----------p~~---------~~~~~~~~~~~~~~ 309 (408)
+|+..+|. +..+|+.++.++...|++++|+.+|++++... |.+ ....+|..++.++.
T Consensus 369 rAi~~~P~---s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 369 LGQQCIPN---SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 99999998 78999999999999999999999999999752 421 23568999999988
Q ss_pred HcCCchhHHHHH----------------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 015351 310 QYGDREGIEDAI----------------------------VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERARE 361 (408)
Q Consensus 310 ~~g~~~~~~~~~----------------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 361 (408)
+.|+.+.++.+. .+.|+.+|+++++..|+++..|..++.++...|+.+.|+.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 777644332210 3567777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 362 VYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 362 ~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
+|++|+...|+... ...+|..|..|+. +.|+.+.+.+++
T Consensus 526 lferal~~~~~~~~------~~~lw~~~~~fE~-~~G~~~~~~~v~ 564 (679)
T 4e6h_A 526 LFESSIDKISDSHL------LKMIFQKVIFFES-KVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHTTTSSSTTH------HHHHHHHHHHHHH-HTCCSHHHHHHH
T ss_pred HHHHHHHhcCCHHH------HHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 77777777664111 1136777777774 777777777664
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.9e-27 Score=224.16 Aligned_cols=287 Identities=12% Similarity=0.051 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH---ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh----ccCHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEES---QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK----NKFINH 143 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~ 143 (408)
+.+++|+..|+++++.+|+++.++..++.++.. .++.++|+..|+++++.+|+++.++..++..+.. .|++++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 356899999999999999999999999988654 5777899999999999999999999888876554 457889
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh-----------------
Q 015351 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRY----------------- 205 (408)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~----------------- 205 (408)
|...|++++...|+++.++..+|.++...|++++|+..|+++++..|+ ..++..+|.++...
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 88898888877543
Q ss_pred --hhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHcCChHHH
Q 015351 206 --NEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE-ERCKETERA 281 (408)
Q Consensus 206 --~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A 281 (408)
+.++.|+..|++++...|. ...+..+|.++...|++++|+..|+++++..|.+.....++..++.+. ...|++++|
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 391 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA 391 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3467899999999999985 677999999999999999999999999999887554556677887765 478999999
Q ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 015351 282 RCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERARE 361 (408)
Q Consensus 282 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 361 (408)
+..|+++++..|.+. .... . ...+..++++++..+|.++.+|..+|.++...|++++|++
T Consensus 392 i~~y~kal~i~~~~~--~~~~----------~--------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 392 IHHFIEGVKINQKSR--EKEK----------M--------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHSCCCCH--HHHH----------H--------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHhcCcccH--HHHH----------H--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999862 1110 0 2346677889999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhHH
Q 015351 362 VYERAIANVPPAEEKR 377 (408)
Q Consensus 362 ~~~~al~~~p~~~~~~ 377 (408)
+|++|++..|.+|...
T Consensus 452 ~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 452 DSERGLESGSLIPSAS 467 (472)
T ss_dssp ----------------
T ss_pred HHHHHHhcCCCCCcHh
Confidence 9999999988888643
No 25
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=9.1e-28 Score=213.47 Aligned_cols=266 Identities=19% Similarity=0.329 Sum_probs=226.5
Q ss_pred cCCChHHHHHHHHHHHHc----cCH----HHHHHHHHHHHhccCCChHHHHHHHHHHHh-------ccCH-------HHH
Q 015351 87 VRWNTGVWIKYAKWEESQ----KDF----NRARSVWERALEVDYRNHTLWLKYAEVEMK-------NKFI-------NHA 144 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~~~~-------~~A 144 (408)
+|.+...|..++.+..+. ++. ++|+.+|++++..+|+++.+|+.+|.++.. .|++ ++|
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 344567899999988775 344 789999999999999999999999998874 4775 999
Q ss_pred HHHHHHHHH-hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HH-HHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 015351 145 RNVWDRAVT-LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQ-GWLSYIKFELRYNEVERARQIYERFVQC 221 (408)
Q Consensus 145 ~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~ 221 (408)
+.+|++++. ++|++..+|..+|.++...|++++|+.+|+++++..|. .. +|..++.++.+.|++++|+.+|+++++.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999 69999999999999999999999999999999999998 65 9999999999999999999999999998
Q ss_pred CC-ChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCcch
Q 015351 222 HP-KVSTWIKYAKFEMK-MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHI--PKGRA 297 (408)
Q Consensus 222 ~p-~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~ 297 (408)
.| +..+|...+.+... .|++++|+.+|+++++.+|+ ++.+|..++.++...|++++|+.+|++++... |.+..
T Consensus 164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 87 46778777776544 69999999999999999998 79999999999999999999999999999963 43234
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
..+|..++.++...|+ .+.|..+++++++.+|+++.... .+.+.. -.+.+...|.++.
T Consensus 241 ~~l~~~~~~~~~~~g~--------~~~a~~~~~~a~~~~p~~~~~~~-~~~~~~-----------r~~~l~~~P~~~~ 298 (308)
T 2ond_A 241 GEIWARFLAFESNIGD--------LASILKVEKRRFTAFREEYEGKE-TALLVD-----------RYKFMDLYPCSAS 298 (308)
T ss_dssp HHHHHHHHHHHHHHSC--------HHHHHHHHHHHHHHTTTTTSSCH-HHHHHT-----------TTCBTTBCSSCHH
T ss_pred HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHcccccccch-HHHHHH-----------HHHhcccCCCCHH
Confidence 7899999999999999 55689999999999998654321 122211 1155678888886
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.2e-27 Score=219.86 Aligned_cols=308 Identities=14% Similarity=0.103 Sum_probs=250.6
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEV---------DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--- 155 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--- 155 (408)
+..+.++..+|.++...|++++|++.|++++++ +|.....|..+|.++...|++++|+..|++++.+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344677889999999999999999999999875 56777889999999999999999999999999873
Q ss_pred -----CCchHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCCC
Q 015351 156 -----PRVDQLWYKYIHMEEML--GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRY---NEVERARQIYERFVQCHPK 224 (408)
Q Consensus 156 -----p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~ 224 (408)
+..+.++...|..+... +++++|+.+|+++++++|+ +.++..++.+.... ++.++|+..|+++++.+|+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 34567787777666554 5799999999999999999 88898888876654 4567899999999999985
Q ss_pred -hHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHH
Q 015351 225 -VSTWIKYAKFE----MKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAED 299 (408)
Q Consensus 225 -~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 299 (408)
..++..++..+ ...|++++|.+.+++++...|. .+.++..+|.++...|++++|+..|+++++..|.+ ..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~ 282 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG---VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--AY 282 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh--HH
Confidence 56676666554 4457889999999999999999 78999999999999999999999999999999997 67
Q ss_pred HHHHHHHHHHHcCC------------chhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015351 300 LYRKFVAFEKQYGD------------REGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAI 367 (408)
Q Consensus 300 ~~~~~~~~~~~~g~------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 367 (408)
++..++.++...+. ..... ..++.|...|++++..+|.+..++..+|.++...|++++|+.+|++++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLL-ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHH-HHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 77777776543221 11111 126789999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 368 ANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 368 ~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
+..|++.... .++..++.+.....|++++|+..|
T Consensus 362 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 362 SKELTPVAKQ------LLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp HSCCCHHHHH------HHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hcCCCChHHH------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9988766422 245566665545789999998876
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=1.5e-27 Score=213.47 Aligned_cols=271 Identities=11% Similarity=0.047 Sum_probs=237.3
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE 202 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 202 (408)
+...|+..|..+...|++++|+..|++++...|++..+|..+|.++...|++++|...|+++++..|. ..++..++.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhCCC-hHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 015351 203 LRYNEVERARQIYERFVQCHPK-VSTWIKY--------------AK-FEMKMGEVDRARNVYERAVEKLADDEEAEQLFV 266 (408)
Q Consensus 203 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 266 (408)
...|++++|+..|+++++..|. ...+..+ +. ++...|++++|...++++++..|. ++.++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN---DAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT---CHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC---CHHHHH
Confidence 9999999999999999999884 3444444 44 577889999999999999999998 789999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015351 267 AFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDY 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 346 (408)
.+|.++...|++++|...++++++..|.+ ...+..++.++...|+ +++|+..|++++..+|+++.+|..+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l 246 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDD--AQLWNKLGATLANGNR--------PQEALDAYNRALDINPGYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999999999999987 7889999999999999 6679999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH---HHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351 347 IRLEESVGNKERAREVYERAIANVPPAEEKRY---WQRYIYLWINYALYEELDAGDMERTRDVYQ 408 (408)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~ 408 (408)
|.++...|++++|...|+++++..|.+..... .......|..++..+ ...|++++|..+|+
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL-NVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH-HHTTCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH-HhcCCHHHHHHHHH
Confidence 99999999999999999999999888311000 000113677788888 48999999998874
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=6.5e-28 Score=219.02 Aligned_cols=248 Identities=9% Similarity=0.025 Sum_probs=227.6
Q ss_pred HHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCC-HH
Q 015351 116 RALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN-VAGARQIFERWMHWMPD-QQ 193 (408)
Q Consensus 116 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~-~~ 193 (408)
.++..+|++..+|..++.++...|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|+++++++|+ ..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 35678899999999999999999999999999999999999999999999999999997 99999999999999999 99
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 015351 194 GWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 272 (408)
+|..++.++...|++++|+..|+++++.+| +..+|..+|.++...|++++|+..|+++++.+|. +..+|..+|.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~---~~~a~~~lg~~l 244 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR---NNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 999999999999999999999999999999 5789999999999999999999999999999999 899999999999
Q ss_pred HH-cCChHHH-----HHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015351 273 ER-CKETERA-----RCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDY 346 (408)
Q Consensus 273 ~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 346 (408)
.. .|..++| +..|++++...|.+ ...|..++.++...|..+ +++|+..++++ ..+|+++.++..+
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~------~~~a~~~~~~~-~~~p~~~~al~~L 315 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHN--ESAWNYLKGILQDRGLSK------YPNLLNQLLDL-QPSHSSPYLIAFL 315 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTTTCGGG------CHHHHHHHHHH-TTTCCCHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHccCccc------hHHHHHHHHHh-ccCCCCHHHHHHH
Confidence 99 5665888 59999999999998 788998898888777311 44688888887 8999999999999
Q ss_pred HHHHHHcC--------C-HHHHHHHHHHH-HhcCCCchh
Q 015351 347 IRLEESVG--------N-KERAREVYERA-IANVPPAEE 375 (408)
Q Consensus 347 ~~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~ 375 (408)
|.++...| + +++|+.+|+++ ++.+|....
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~ 354 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE 354 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence 99998874 2 58999999999 999998875
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=2.4e-27 Score=199.49 Aligned_cols=199 Identities=16% Similarity=0.090 Sum_probs=177.5
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
|.++.+|..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015351 168 MEEML-----------GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFE 235 (408)
Q Consensus 168 ~~~~~-----------~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~ 235 (408)
++... |++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+.++.++..+|.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~ 161 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELY 161 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 99999 9999999999999999999 99999999999999999999999999999985578899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 236 MKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL 289 (408)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 289 (408)
...|++++|+..|+++++..|+ ++.++..++.++...|++++|+..|+++-
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAPK---DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTC---------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999 78999999999999999999999998864
No 30
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.96 E-value=5.9e-26 Score=219.05 Aligned_cols=280 Identities=15% Similarity=0.219 Sum_probs=223.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccC---HHHHHHHHHHHH
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF---INHARNVWDRAV 152 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al 152 (408)
.+..|++.|..+|.+...|..|+....+.++++.++.+|++++..+|.+..+|..++.++.+.|+ ++.+..+|++++
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhCC--CchHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHh----CCC-HHHHHHHHHHHH---------HhhhH
Q 015351 153 TLLP--RVDQLWYKYIHMEEMLGNV--------AGARQIFERWMHW----MPD-QQGWLSYIKFEL---------RYNEV 208 (408)
Q Consensus 153 ~~~p--~~~~~~~~~~~~~~~~~~~--------~~A~~~~~~al~~----~p~-~~~~~~~~~~~~---------~~~~~ 208 (408)
...| .+..+|..|+.+....++. +..+.+|++|+.. ++. ..+|..|+.++. .++++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 9993 5688999999988887664 3455889998874 555 789999998865 34567
Q ss_pred HHHHHHHHHHHHhCCC---hHHHHH-------------------------------------------------------
Q 015351 209 ERARQIYERFVQCHPK---VSTWIK------------------------------------------------------- 230 (408)
Q Consensus 209 ~~A~~~~~~al~~~p~---~~~~~~------------------------------------------------------- 230 (408)
+.++.+|++++.. |. ..+|..
T Consensus 211 ~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 211 QYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 8899999998853 31 223322
Q ss_pred ------------------HHHHHHHcC-------CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHH-HH
Q 015351 231 ------------------YAKFEMKMG-------EVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERAR-CI 284 (408)
Q Consensus 231 ------------------~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~-~~ 284 (408)
++.+....+ .......+|++++..+|. .+.+|+.++.++...|+.++|+ .+
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~---~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF---APEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 222221111 012356789999999998 8999999999999999999997 99
Q ss_pred HHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhh-----------CCC-----------CHHH
Q 015351 285 YKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRK-----------NPM-----------NYDI 342 (408)
Q Consensus 285 ~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~ 342 (408)
|++|+..+|.+ ..+|..++.++...|+ +++|+.+|++++.. .|. ...+
T Consensus 367 l~rAi~~~P~s--~~Lwl~~a~~ee~~~~--------~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 367 LKLGQQCIPNS--AVLAFSLSEQYELNTK--------IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp HHHHHHHCTTC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC--HHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 99999999987 7899999999999998 44566667766653 242 2446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 343 WFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 343 ~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
|..++.++.+.|+.+.|+.+|.+|++.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777777765
No 31
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=1.1e-26 Score=206.44 Aligned_cols=242 Identities=18% Similarity=0.361 Sum_probs=217.7
Q ss_pred cCCChHHHHHHHHHHHhc----cCH----HHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------cCCh-------HHH
Q 015351 121 DYRNHTLWLKYAEVEMKN----KFI----NHARNVWDRAVTLLPRVDQLWYKYIHMEEM-------LGNV-------AGA 178 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~----~~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------~~~~-------~~A 178 (408)
+|.....|..++.++... ++. ++|+..|++++..+|+++.+|..+|.++.. .|++ ++|
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 345667899999988775 243 789999999999999999999999999874 5886 899
Q ss_pred HHHHHHHHH-hCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 179 RQIFERWMH-WMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VS-TWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 179 ~~~~~~al~-~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
+.+|+++++ ..|+ ..+|..++.++...|++++|+.+|+++++..|. .. +|..++.++...|++++|+.+|+++++.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999 6898 889999999999999999999999999999885 55 8999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 015351 255 LADDEEAEQLFVAFAEFEER-CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV 333 (408)
Q Consensus 255 ~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 333 (408)
.|. ...+|...+.+... .|++++|+.+|+++++..|.+ ..+|..++.++...|+ +++|+.+|++++
T Consensus 164 ~p~---~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~--------~~~A~~~~~~al 230 (308)
T 2ond_A 164 ART---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNE--------DNNTRVLFERVL 230 (308)
T ss_dssp TTC---CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCC--------HHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCC--------HHHHHHHHHHHH
Confidence 887 67888888777654 699999999999999999987 8999999999999999 667999999999
Q ss_pred hh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 334 RK---NP-MNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 334 ~~---~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
.. .| ....+|..++.++...|+.+.|..+++++++..|++..
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 96 55 37889999999999999999999999999999998764
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=1.2e-26 Score=202.21 Aligned_cols=252 Identities=11% Similarity=0.015 Sum_probs=218.6
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch----HHHHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD----QLWYKY 165 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~ 165 (408)
+++.++.+|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++. .|.++ .+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999 44433 459999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHH
Q 015351 166 IHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~ 243 (408)
|.++...|++++|+..|+++++..|. ..+|..+|.++...|++++|+..|+++++..| +..++..+|......+++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 89999999999999999999999999999988 47789999955555679999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhC---CCcc---hHHHHHHHHHHHHHcCCc
Q 015351 244 ARNVYERAVEKLADDEEAEQLFVAFAEFEERCKE---TERARCIYKFALDHI---PKGR---AEDLYRKFVAFEKQYGDR 314 (408)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~---p~~~---~~~~~~~~~~~~~~~g~~ 314 (408)
|...|+++++..|+ +...+..++.++...|+ +++|...|+++++.. |... ...++..++.++...|+
T Consensus 161 A~~~~~~a~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 236 (272)
T 3u4t_A 161 ADSSFVKVLELKPN---IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD- 236 (272)
T ss_dssp HHHHHHHHHHHSTT---CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCcc---chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC-
Confidence 99999999999998 68999999999999998 899999999999865 4321 23677888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 015351 315 EGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESV 353 (408)
Q Consensus 315 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 353 (408)
+++|+..|++++..+|+++.++-.++.+....
T Consensus 237 -------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 237 -------KVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp -------HHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred -------HHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 66799999999999999999888887776543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.4e-26 Score=195.68 Aligned_cols=239 Identities=11% Similarity=0.042 Sum_probs=221.6
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc-------hHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV-------DQLW 162 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~ 162 (408)
.+..|..+|..+...|++++|+.+|+++++.+ .++.+|..+|.++...|++++|+..|++++...|++ ..+|
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45789999999999999999999999999999 999999999999999999999999999999998876 6899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCH
Q 015351 163 YKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEV 241 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~ 241 (408)
..+|.++...|++++|+..|+++++..|.. .++...|++++|+..+++++...|. ..++..+|.++...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999984 3466678899999999999999884 67899999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHH
Q 015351 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 321 (408)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 321 (408)
++|...|+++++..|. ++.++..+|.++...|++++|...|+++++..|.+ ...+..++.++...|+
T Consensus 156 ~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~-------- 222 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKATAQIAVKE-------- 222 (258)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHhh--------
Confidence 9999999999999998 78999999999999999999999999999999987 7889999999999999
Q ss_pred HHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 015351 322 VGKRRFQYEDEVRKN------PMNYDIWFDYIRL 349 (408)
Q Consensus 322 ~~~A~~~~~~al~~~------p~~~~~~~~~~~~ 349 (408)
+++|+..|+++++.+ |.+..++..+..+
T Consensus 223 ~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 223 YASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 667999999999999 9888888877654
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=1.3e-25 Score=197.45 Aligned_cols=276 Identities=10% Similarity=0.009 Sum_probs=228.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChH
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRN-HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVA 176 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 176 (408)
++-.+..|++..|+..+++....+|.+ .+....++..+...|+++.|+..++.. .|....++..++.++...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHH
Confidence 345567899999999999888888877 467788899999999999999877652 4555677888888898899999
Q ss_pred HHHHHHHHHHHh--CCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015351 177 GARQIFERWMHW--MPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVE 253 (408)
Q Consensus 177 ~A~~~~~~al~~--~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 253 (408)
+|++.+++++.. +|+ ..++..+|.++...|++++|+..|++ ..+..++..++.++...|++++|.+.|+++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999998876 477 88899999999999999999999988 34678899999999999999999999999999
Q ss_pred HcCCcHHHHHHHH--HHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Q 015351 254 KLADDEEAEQLFV--AFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYED 331 (408)
Q Consensus 254 ~~p~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 331 (408)
..|+ ...... .+..++...|++++|..+|+++++..|.+ +.++..++.++...|+ +++|...|++
T Consensus 159 ~~p~---~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~--------~~eA~~~l~~ 225 (291)
T 3mkr_A 159 QDED---ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT--LLLLNGQAACHMAQGR--------WEAAEGVLQE 225 (291)
T ss_dssp HCTT---CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred hCcC---cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 9887 333332 33455556689999999999999999987 7899999999999999 6679999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 332 EVRKNPMNYDIWFDYIRLEESVGNKER-AREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 332 al~~~p~~~~~~~~~~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
++..+|+++++|.++|.++...|+..+ +..+++++++..|+++.. . ++.+ +.+.|+++..-|
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----------~---d~~~-~~~~fd~~~~~~ 288 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----------K---EYRA-KENDFDRLVLQY 288 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----------H---HHHH-HHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----------H---HHHH-HHHHHHHHHHHc
Confidence 999999999999999999999999876 678999999999999852 1 2222 567788877655
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-25 Score=191.03 Aligned_cols=232 Identities=10% Similarity=0.015 Sum_probs=215.5
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------HHH
Q 015351 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--------QQG 194 (408)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~ 194 (408)
.....|..+|.++...|++++|+..|++++... .++.+|..+|.++...|++++|+..|+++++..|. ..+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 346789999999999999999999999999999 88999999999999999999999999999998765 478
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q 015351 195 WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 274 (408)
|..++.++...|++++|+..|+++++..|.. .++...|++++|...+++++...|. .+.++..+|.++..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPE---KAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999884 4556667899999999999998777 89999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 015351 275 CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG 354 (408)
Q Consensus 275 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 354 (408)
.|++++|...|+++++..|.+ ..++..++.++...|+ +++|+..|++++..+|+++.+|..+|.++...|
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMS--------FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 7899999999999999 667999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcC------CCchh
Q 015351 355 NKERAREVYERAIANV------PPAEE 375 (408)
Q Consensus 355 ~~~~A~~~~~~al~~~------p~~~~ 375 (408)
++++|...|+++++.. |.+..
T Consensus 222 ~~~~A~~~~~~a~~~~~~~~~~p~~~~ 248 (258)
T 3uq3_A 222 EYASALETLDAARTKDAEVNNGSSARE 248 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred hHHHHHHHHHHHHHhChhhcCCCchHH
Confidence 9999999999999998 77664
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=3.7e-25 Score=192.78 Aligned_cols=235 Identities=13% Similarity=0.051 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh----HHHHHHHHHHHhccCHHHHHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH----TLWLKYAEVEMKNKFINHARNV 147 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~ 147 (408)
.+++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++. .|.++ .+|..+|.++...|++++|+..
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 346799999999999999999999999999999999999999999999 55544 4599999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-h
Q 015351 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-V 225 (408)
Q Consensus 148 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~ 225 (408)
|++++..+|+++.+|..+|.++...|++++|+..|+++++..|. ..+|..++......+++++|+..|+++++..|+ .
T Consensus 97 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 176 (272)
T 3u4t_A 97 YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176 (272)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999999999999999999999999998 999999994444556999999999999999985 7
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHc---CCc--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcch
Q 015351 226 STWIKYAKFEMKMGE---VDRARNVYERAVEKL---ADD--EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA 297 (408)
Q Consensus 226 ~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~---p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 297 (408)
..+..++.++...|+ +++|...|+++++.. |+. .....++..+|.++...|++++|...|+++++..|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-- 254 (272)
T 3u4t_A 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN-- 254 (272)
T ss_dssp HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH--
Confidence 889999999999998 899999999999987 431 1134788999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 015351 298 EDLYRKFVAFEK 309 (408)
Q Consensus 298 ~~~~~~~~~~~~ 309 (408)
...+..+..+..
T Consensus 255 ~~a~~~l~~~~~ 266 (272)
T 3u4t_A 255 KKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHhhhhhc
Confidence 566666655544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=5.7e-25 Score=184.97 Aligned_cols=199 Identities=17% Similarity=0.145 Sum_probs=175.5
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 015351 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIK 200 (408)
Q Consensus 122 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~ 200 (408)
|.++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHh-----------hhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 015351 201 FELRY-----------NEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAF 268 (408)
Q Consensus 201 ~~~~~-----------~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 268 (408)
++... |++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.. + ++.++..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~---~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D---TPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---CHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c---chHHHHHH
Confidence 99999 9999999999999999995 7889999999999999999999999999998 6 79999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q 015351 269 AEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334 (408)
Q Consensus 269 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 334 (408)
|.++...|++++|+..|+++++..|++ ..++..++.++...|+ +++|+..|+++-.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKD--LDLRVRYASALLLKGK--------AEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccC--------HHHHHHHHHHHhh
Confidence 999999999999999999999999998 7889999999999998 5568888877643
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=4.8e-25 Score=203.21 Aligned_cols=301 Identities=11% Similarity=0.000 Sum_probs=248.5
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh----HHHHHHHHHHHhccCHHHHHHHHHHHHHh------CCC
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH----TLWLKYAEVEMKNKFINHARNVWDRAVTL------LPR 157 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~ 157 (408)
+.....|...|..+...|++++|+..|++++...|.++ .+|..+|.++...|++++|+..|++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34566788999999999999999999999999999984 68899999999999999999999999887 344
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhh--------------------HHH
Q 015351 158 VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNE--------------------VER 210 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~--------------------~~~ 210 (408)
...++..+|.++...|++++|...++++++..|. ..++..++.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 5678999999999999999999999999987654 4588899999999999 999
Q ss_pred HHHHHHHHHHhCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCChHH
Q 015351 211 ARQIYERFVQCHP---K----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD---DEEAEQLFVAFAEFEERCKETER 280 (408)
Q Consensus 211 A~~~~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~ 280 (408)
|+..|++++...+ + ..++..+|.++...|++++|...++++++..+. ......++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9999999988632 1 356889999999999999999999999987654 22345589999999999999999
Q ss_pred HHHHHHHHHhhCCCcc----hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 015351 281 ARCIYKFALDHIPKGR----AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN------YDIWFDYIRLE 350 (408)
Q Consensus 281 A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~ 350 (408)
|...|++++...|... ...++..++.++...|+ +++|...|++++...+.. ..++..+|.++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--------YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999998654321 25677888999999999 667999999999875543 66899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCCh
Q 015351 351 ESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDM 400 (408)
Q Consensus 351 ~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~ 400 (408)
...|++++|...|+++++..+...... .....+..++.++. ..|+.
T Consensus 318 ~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l~~~~~-~~g~~ 363 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLEISREVGDKS---GELTARLNLSDLQM-VLGLS 363 (406)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHH-HHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCc---chhHHHHHHHHHHH-HhhHh
Confidence 999999999999999998754432211 12234555565553 55554
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=1.5e-24 Score=190.67 Aligned_cols=267 Identities=10% Similarity=-0.009 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWN-TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
.++.|+..+++....+|.+ .+....+++.+...|+++.|+..++. .+|.+..++..++.++...|+.++|+..+++
T Consensus 14 ~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3567888888877777876 46778899999999999999998866 3566778888899999999999999999999
Q ss_pred HHHh--CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChH-
Q 015351 151 AVTL--LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS- 226 (408)
Q Consensus 151 al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~- 226 (408)
++.. +|+++.+++.+|.++...|++++|+..|++ |. ..++..++.++.+.|++++|++.|+++++..|+..
T Consensus 91 ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 165 (291)
T 3mkr_A 91 EMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL 165 (291)
T ss_dssp HHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH
Confidence 9986 699999999999999999999999999998 55 89999999999999999999999999999998642
Q ss_pred HHH--HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHH
Q 015351 227 TWI--KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKF 304 (408)
Q Consensus 227 ~~~--~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 304 (408)
..+ .+..++...|++++|..+|+++++..|+ ++.+|..+|.++...|++++|...|++++...|++ +..+..+
T Consensus 166 ~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~l~~l 240 (291)
T 3mkr_A 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP---TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH--PETLINL 240 (291)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 222 2334445568999999999999999998 79999999999999999999999999999999998 7889999
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015351 305 VAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREV 362 (408)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 362 (408)
+.++...|+..+ .+..+++++++.+|+++.+.. +..+.+.++++..-
T Consensus 241 ~~~~~~~g~~~e-------aa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 241 VVLSQHLGKPPE-------VTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHTTCCHH-------HHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH-------HHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 999999998542 367889999999999997653 33444444444443
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=4.7e-25 Score=203.96 Aligned_cols=279 Identities=9% Similarity=-0.012 Sum_probs=240.8
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh----HHHHHHHHHHHhccCHHHHHHHHHHHHHh------CCCc
Q 015351 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH----TLWLKYAEVEMKNKFINHARNVWDRAVTL------LPRV 158 (408)
Q Consensus 89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~ 158 (408)
.....+..+|..+...|++++|+..|+++++..|+++ .+|..+|.++...|++++|+..|++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3345677899999999999999999999999999987 58999999999999999999999999988 4666
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CC-HHHHHHHHHHHHHhhh-----------------HHHHHHH
Q 015351 159 DQLWYKYIHMEEMLGNVAGARQIFERWMHWM------PD-QQGWLSYIKFELRYNE-----------------VERARQI 214 (408)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~-~~~~~~~~~~~~~~~~-----------------~~~A~~~ 214 (408)
..++..+|.++...|++++|...|+++++.. |. ..++..++.++...|+ +++|+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 7899999999999999999999999999873 33 6788999999999999 9999999
Q ss_pred HHHHHHhCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCChHHHHHH
Q 015351 215 YERFVQCHP---K----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD---DEEAEQLFVAFAEFEERCKETERARCI 284 (408)
Q Consensus 215 ~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~A~~~ 284 (408)
|+++++..+ + ..++..+|.++...|++++|...|+++++..+. ......++..++.++...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999988642 1 347889999999999999999999999998764 222345889999999999999999999
Q ss_pred HHHHHhhCCCc----chHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcC
Q 015351 285 YKFALDHIPKG----RAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM------NYDIWFDYIRLEESVG 354 (408)
Q Consensus 285 ~~~al~~~p~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g 354 (408)
|++++...+.. ....++..++.++...|+ +++|...|++++...+. ...++..+|.++...|
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHE--------FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 99999865532 125678888999999999 66799999999887543 2458899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchh
Q 015351 355 NKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 355 ~~~~A~~~~~~al~~~p~~~~ 375 (408)
++++|...|+++++..+....
T Consensus 358 ~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 358 GHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccc
Confidence 999999999999998876554
No 41
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.94 E-value=6.3e-24 Score=199.52 Aligned_cols=321 Identities=16% Similarity=0.224 Sum_probs=221.6
Q ss_pred CHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 015351 40 TAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKD-FNRARSVWERAL 118 (408)
Q Consensus 40 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 118 (408)
.+...+..+++..|. +..++++.+|++++...| ++++|..|+.+....++ .+....+|++++
T Consensus 13 ~aR~vyer~l~~~P~----------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS----------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp CHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 455566666666654 345778899999998888 88899999988887763 456778888888
Q ss_pred hc---cCCChHHHHHHHHHHH----hccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcC-------------ChHH
Q 015351 119 EV---DYRNHTLWLKYAEVEM----KNKFINHARNVWDRAVTLLPR-VDQLWYKYIHMEEMLG-------------NVAG 177 (408)
Q Consensus 119 ~~---~p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~-------------~~~~ 177 (408)
.. +|.+..+|..++.++. .+|+.+.+..+|++|+...+. ...+|..+..+....+ .+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 64 6788899999988865 356788899999999885332 3467777777654433 2334
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHH
Q 015351 178 ARQIFERWMHWMPD--QQGWLSYIKFELRYN-------EVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 178 A~~~~~~al~~~p~--~~~~~~~~~~~~~~~-------~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~ 247 (408)
|+..|+.+....+. ...|..++.+....+ ..+++..+|++++...| .+.+|+.++.++...|+.+.|+.+
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55556665554333 568888888876431 14567788999998887 477899999999889999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----------CCCcchHHHHHHHHHHHHHcCCchh
Q 015351 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH-----------IPKGRAEDLYRKFVAFEKQYGDREG 316 (408)
Q Consensus 248 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~~~~~~~~~~~g~~~~ 316 (408)
|++++.. |. +..+|..++.+.. . ++. ++++.+. .+......+|..++.++.+.++
T Consensus 236 ~erAi~~-P~---~~~l~~~y~~~~e-~---~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~--- 301 (493)
T 2uy1_A 236 VERGIEM-SD---GMFLSLYYGLVMD-E---EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG--- 301 (493)
T ss_dssp HHHHHHH-CC---SSHHHHHHHHHTT-C---THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHhC-CC---cHHHHHHHHhhcc-h---hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC---
Confidence 9999998 87 5677877766621 1 111 2222111 0122235789999998887776
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhh
Q 015351 317 IEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG-NKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEEL 395 (408)
Q Consensus 317 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~ 395 (408)
.+.|+.+|+++ ...+....+|...+.++...| +.+.|+.+|+++++..|+++. +|..|++++ .
T Consensus 302 -----~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~---------~~~~yid~e-~ 365 (493)
T 2uy1_A 302 -----LELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL---------LKEEFFLFL-L 365 (493)
T ss_dssp -----HHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-H
T ss_pred -----HHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH---------HHHHHHHHH-H
Confidence 56688999998 433346678888888877766 589999999999998888764 334444444 3
Q ss_pred hcCChhHHhhhc
Q 015351 396 DAGDMERTRDVY 407 (408)
Q Consensus 396 ~~g~~~~A~~~~ 407 (408)
..|+.++|+.+|
T Consensus 366 ~~~~~~~aR~l~ 377 (493)
T 2uy1_A 366 RIGDEENARALF 377 (493)
T ss_dssp HHTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 455555555444
No 42
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.94 E-value=2.1e-23 Score=195.96 Aligned_cols=302 Identities=15% Similarity=0.185 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHHh---cCCChHHHHHHHHHHH----HccCHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHhcc------
Q 015351 74 LRKRKEFEDLIRR---VRWNTGVWIKYAKWEE----SQKDFNRARSVWERALEVDYRN-HTLWLKYAEVEMKNK------ 139 (408)
Q Consensus 74 ~~A~~~~~~~l~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~------ 139 (408)
+..+..|++++.. +|.+..+|..++.++. .+|+++.++.+|++++..-+.+ ..+|..+..+....+
T Consensus 65 ~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 65 FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp -CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHH
Confidence 4577899999975 7889999999999976 4578999999999999953222 467887877665433
Q ss_pred -------CHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcC--C-----hHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 015351 140 -------FINHARNVWDRAVTLLPR-VDQLWYKYIHMEEMLG--N-----VAGARQIFERWMHWMPD-QQGWLSYIKFEL 203 (408)
Q Consensus 140 -------~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~--~-----~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 203 (408)
.+..|+..|+.+....+. +...|..++.+....+ - .+.+..+|++++...|. +.+|..++.++.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344566677777665443 5668999998876432 1 34578899999999999 999999999999
Q ss_pred HhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHH
Q 015351 204 RYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKL----------ADDEEAEQLFVAFAEFE 272 (408)
Q Consensus 204 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------p~~~~~~~~~~~~~~~~ 272 (408)
+.|+.+.|+.+|++++.. |. ..+|+.++.+.. .++. ++++.+.. +.......+|..++.++
T Consensus 225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e----~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD----EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT----CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc----hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 999999999999999999 85 567777666521 1111 22222211 01122568999999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015351 273 ERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES 352 (408)
Q Consensus 273 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 352 (408)
.+.++.+.|+.+|+++ . .|.. ...+|..++.++...++. .+.|+.+|+.+++..|+++..|..+++++..
T Consensus 297 ~r~~~~~~AR~i~~~A-~-~~~~-~~~v~i~~A~lE~~~~~d-------~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-G-NEGV-GPHVFIYCAFIEYYATGS-------RATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHCHHHHHHHHHHH-T-TSCC-CHHHHHHHHHHHHHHHCC-------SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHh-h-CCCC-ChHHHHHHHHHHHHHCCC-------hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999 4 4543 357888888888766631 4469999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 353 VGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 353 ~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
.|+.+.|+.+|+++. .+. .+|..|..|+. ..|+.+.++++|
T Consensus 367 ~~~~~~aR~l~er~~----k~~---------~lw~~~~~fE~-~~G~~~~~r~v~ 407 (493)
T 2uy1_A 367 IGDEENARALFKRLE----KTS---------RMWDSMIEYEF-MVGSMELFRELV 407 (493)
T ss_dssp HTCHHHHHHHHHHSC----CBH---------HHHHHHHHHHH-HHSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH----HHH---------HHHHHHHHHHH-HCCCHHHHHHHH
Confidence 999999999999983 222 27888888884 889999998876
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=2.1e-24 Score=188.09 Aligned_cols=225 Identities=9% Similarity=-0.007 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRR----VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARN 146 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 146 (408)
+.+++|+..|+++++. +|.++.+|..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 5568899999999987 466788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChH
Q 015351 147 VWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS 226 (408)
Q Consensus 147 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 226 (408)
.|++++..+|+++.+|..+|.++...|++++|+..|+++++..|+......+..+....|++++|+..|++++...|+..
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 178 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch
Confidence 99999999999999999999999999999999999999999999933333344455677999999999999999988655
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 227 TWIKYAKFEMKMGEVDRARNVYERAVEKLADD-EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 227 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
....++.++...++.++|...+++++...|.. +..+.+|..+|.++...|++++|...|++++...|.+
T Consensus 179 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 179 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 44557778888899999999999998776641 1247899999999999999999999999999999876
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=3.3e-24 Score=183.36 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=175.4
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 169 (408)
.+..|..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.+..++..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHH
Q 015351 170 EMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~ 247 (408)
...|++++|+..|+++++..|. ..++..++.++...|++++|+..|+++++..| +..++..+|.++...|++++|...
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999988 88899999999999999999999999999987 477889999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH
Q 015351 248 YERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEK 309 (408)
Q Consensus 248 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 309 (408)
|+++++..|. .+.++..++.++...|++++|...|+++++..|.+ ...+..+..+..
T Consensus 182 ~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~l~~ 238 (243)
T 2q7f_A 182 FAAVTEQDPG---HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH--MLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC--HHHHHHHTC---
T ss_pred HHHHHHhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch--HHHHHHHHHHHh
Confidence 9999999888 68889999999999999999999999999999987 566665555443
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=3.2e-24 Score=192.14 Aligned_cols=275 Identities=11% Similarity=0.005 Sum_probs=232.4
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh----HHHHHHHHHHHhccCHHHHHHHHHHHHHh------CCCchH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH----TLWLKYAEVEMKNKFINHARNVWDRAVTL------LPRVDQ 160 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~ 160 (408)
...|...|..+...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34677889999999999999999999999999984 78889999999999999999999999987 344567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhh--------------------HHHHHH
Q 015351 161 LWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNE--------------------VERARQ 213 (408)
Q Consensus 161 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~--------------------~~~A~~ 213 (408)
++..+|.++...|++++|...++++++..+. ..++..++.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 8999999999999999999999999987543 4488899999999999 999999
Q ss_pred HHHHHHHhCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCChHHHHH
Q 015351 214 IYERFVQCHP---K----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD---DEEAEQLFVAFAEFEERCKETERARC 283 (408)
Q Consensus 214 ~~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~A~~ 283 (408)
.+++++...+ + ..++..++.++...|++++|...++++++..+. ......++..++.++...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999987632 1 346889999999999999999999999987653 22345589999999999999999999
Q ss_pred HHHHHHhhCCCcc----hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 015351 284 IYKFALDHIPKGR----AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMN------YDIWFDYIRLEESV 353 (408)
Q Consensus 284 ~~~~al~~~p~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~ 353 (408)
.+++++...+... ...++..++.++...|+ +++|...|++++...|.. ..++..+|.++...
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--------YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999998654321 24677788899999999 667999999998875432 45888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCc
Q 015351 354 GNKERAREVYERAIANVPPA 373 (408)
Q Consensus 354 g~~~~A~~~~~~al~~~p~~ 373 (408)
|++++|...|+++++..+..
T Consensus 317 g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp TCHHHHHHHHHHHHHC----
T ss_pred CChHHHHHHHHHHHHHHHhh
Confidence 99999999999999987654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=6e-23 Score=173.17 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=196.4
Q ss_pred hcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHH
Q 015351 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 86 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 165 (408)
.+|.++.+|..+|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++...|++..+|..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CChHHHHHHHHHHHH--hCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCC
Q 015351 166 IHMEEML-GNVAGARQIFERWMH--WMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGE 240 (408)
Q Consensus 166 ~~~~~~~-~~~~~A~~~~~~al~--~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~ 240 (408)
|.++... |++++|...|+++++ ..|. ..+|..++.++...|++++|+..|+++++..|. ..++..++.++...|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 9999999 999999999999999 5566 789999999999999999999999999999985 7889999999999999
Q ss_pred HHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 241 VDRARNVYERAVEKLA-DDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 241 ~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
+++|...++++++..| . +...+..++.++...|+.+.|..+++.+.+..|++
T Consensus 163 ~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVL---QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999 7 67888889999999999999999999999999987
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=6.4e-24 Score=185.07 Aligned_cols=249 Identities=12% Similarity=0.017 Sum_probs=201.8
Q ss_pred HHHHccCHHHHHHHHHHHHhc----cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh
Q 015351 100 WEESQKDFNRARSVWERALEV----DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNV 175 (408)
Q Consensus 100 ~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 175 (408)
.....|++++|+..|+++++. .|.++.+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 344568999999999999987 4567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 176 AGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 176 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
++|+..|+++++..|. ..+|..+|.++...|++++|+.+|+++++..|+.........+....|++++|...+++++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999999999998 889999999999999999999999999999886544434444556779999999999999998
Q ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc--chHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 015351 255 LADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG--RAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDE 332 (408)
Q Consensus 255 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 332 (408)
.|. ....+ .++.++...++.++|...+++++...|.. ....++..++.++...|+ +++|+..|+++
T Consensus 174 ~~~---~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~a 241 (275)
T 1xnf_A 174 SDK---EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD--------LDSATALFKLA 241 (275)
T ss_dssp SCC---CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHH
T ss_pred CCc---chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence 887 33333 36777778888889999999988765532 114677778888888888 55688888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 333 VRKNPMNYDIWFDYIRLEESVGNKERAREVY 363 (408)
Q Consensus 333 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 363 (408)
+..+|++... ++.++...|++++|+..|
T Consensus 242 l~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 8888876443 355666777788777776
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=2.9e-23 Score=178.68 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=196.8
Q ss_pred hcCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHH
Q 015351 86 RVRWN-TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYK 164 (408)
Q Consensus 86 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (408)
.+|.+ +.+|..+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++...|.+..+|..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 45555 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH--hCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCC
Q 015351 165 YIHMEEMLGNVAGARQIFERWMH--WMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGE 240 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~--~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~ 240 (408)
++.++...|++++|+..|+++++ ..|. ..++..++.++...|++++|+.+|+++++..|. ..++..++.++...|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999 7777 889999999999999999999999999999984 7889999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
+++|...++++++..|. ....+..++.++...|++++|...++++++..|.+
T Consensus 191 ~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQ---NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999998 78889999999999999999999999999999987
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=198.43 Aligned_cols=279 Identities=9% Similarity=0.015 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHhc------cCCChHHHHHHHHHHHhccCH
Q 015351 72 YRLRKRKEFEDLIRRVRWNT----GVWIKYAKWEESQKDFNRARSVWERALEV------DYRNHTLWLKYAEVEMKNKFI 141 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~ 141 (408)
.++.|+..|+++++..|.+. .+|..+|.++...|++++|+..|++++.. .|....++..+|.++...|++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 103 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 103 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence 34669999999999999984 68899999999999999999999999876 455578999999999999999
Q ss_pred HHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHhC------
Q 015351 142 NHARNVWDRAVTLLPRV------DQLWYKYIHMEEMLGN--------------------VAGARQIFERWMHWM------ 189 (408)
Q Consensus 142 ~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~~------ 189 (408)
++|+..+++++...|.. ..++..+|.++...|+ +++|...|+++++..
T Consensus 104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999987653 4589999999999999 999999999998762
Q ss_pred CC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---c
Q 015351 190 PD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP---K----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD---D 258 (408)
Q Consensus 190 p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~ 258 (408)
|. ..++..++.++...|++++|+..|+++++..+ + ..++..+|.++...|++++|...+++++...+. .
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 22 56888999999999999999999999998754 2 237889999999999999999999999987654 2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc----hHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q 015351 259 EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR----AEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVR 334 (408)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 334 (408)
.....++..+|.++...|++++|...|++++...+... ...++..++.++...|+ +++|+..|++++.
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~ 335 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN--------HDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHH
Confidence 22377889999999999999999999999998644321 25678888999999999 6679999999988
Q ss_pred hCC------CCHHHHHHHHHHHHHcCCHHH
Q 015351 335 KNP------MNYDIWFDYIRLEESVGNKER 358 (408)
Q Consensus 335 ~~p------~~~~~~~~~~~~~~~~g~~~~ 358 (408)
..+ ....++..++.++...|+...
T Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 336 ISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 743 336688899999998887643
No 50
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=1.3e-23 Score=197.59 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCH-HHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHH
Q 015351 68 ELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDF-NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARN 146 (408)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 146 (408)
...+..++++..+++.....|.+..+|..+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++...|++++|+.
T Consensus 79 ~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445567788899999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh--------hhH
Q 015351 147 VWDRAVTLLPRVDQLWYKYIHMEEML---------GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRY--------NEV 208 (408)
Q Consensus 147 ~~~~al~~~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~--------~~~ 208 (408)
.|+++++.+|+ ..+|..+|.++... |++++|+..|+++++.+|+ ..+|..+|.++... |++
T Consensus 159 ~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 159 CFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99999999999 69999999999999 9999999999999999999 99999999999999 999
Q ss_pred HHHHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 015351 209 ERARQIYERFVQCHP----KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCI 284 (408)
Q Consensus 209 ~~A~~~~~~al~~~p----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 284 (408)
++|+..|+++++.+| +..+|..+|.++...|++++|...|+++++..|+ ++.++..++.++...|++++|+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA---WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 4788999999999999999999999999999998 788999999999999999988877
Q ss_pred HHH
Q 015351 285 YKF 287 (408)
Q Consensus 285 ~~~ 287 (408)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 654
No 51
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=3.5e-21 Score=182.31 Aligned_cols=299 Identities=11% Similarity=-0.012 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh----ccCHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEES----QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK----NKFINHA 144 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A 144 (408)
.++|...|+++.+. .++.++..+|.++.. .+++++|+..|+++... +++.++..+|.++.. .+++++|
T Consensus 95 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 95 YAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 34566666666543 456666666666666 56666666666666543 456666666666665 5566666
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hhhHHHHHHHHH
Q 015351 145 RNVWDRAVTLLPRVDQLWYKYIHMEEM----LGNVAGARQIFERWMHWMPDQQGWLSYIKFELR----YNEVERARQIYE 216 (408)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~~ 216 (408)
+..|++++.. .++.++..+|.++.. .+++++|...|+++.+.. ++..+..++.++.. .+++++|+.+|+
T Consensus 171 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 171 REWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666666664 346666666666666 666677777777666542 35566666666665 566777777777
Q ss_pred HHHHhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-----CChHHHHHHHHH
Q 015351 217 RFVQCHPKVSTWIKYAKFEMK----MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC-----KETERARCIYKF 287 (408)
Q Consensus 217 ~al~~~p~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~ 287 (408)
++.+. .++..+..++.++.. .+++++|...|+++.+. . ++..+..++.++... +++++|...|++
T Consensus 248 ~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 77654 245566677777766 67777777777777654 2 356777777777776 778888888888
Q ss_pred HHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 015351 288 ALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES----VGNKERAREVY 363 (408)
Q Consensus 288 al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~ 363 (408)
+++..+ ...+..++.++...|.... .++|+.+|+++++. .++.+++.+|.++.. .+++++|...|
T Consensus 322 a~~~~~----~~a~~~lg~~y~~~g~~~~-----~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 322 SAEQGD----ATAQANLGAIYFRLGSEEE-----HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHTTC----HHHHHHHHHHHHHSCCHHH-----HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHhcCC----HHHHHHHHHHHHhCCCccc-----HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777532 3566667777665553322 67899999999986 678999999999998 88999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhh----cCChhHHhhhc
Q 015351 364 ERAIANVPPAEEKRYWQRYIYLWINYALYEELD----AGDMERTRDVY 407 (408)
Q Consensus 364 ~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~----~g~~~~A~~~~ 407 (408)
++|++.. ++. .+..++.++. . .+++++|+..|
T Consensus 391 ~~A~~~~--~~~---------a~~~Lg~~y~-~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 391 RKAAEQG--LSA---------AQVQLGEIYY-YGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHTT--CHH---------HHHHHHHHHH-HTSSSCCCHHHHHHHH
T ss_pred HHHHhCC--CHH---------HHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 9999863 332 4566777774 4 68999998876
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=4.3e-23 Score=168.80 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=146.9
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015351 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168 (408)
Q Consensus 89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 168 (408)
+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.+++...|+++.++..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHH
Q 015351 169 EEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARN 246 (408)
Q Consensus 169 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~ 246 (408)
+...++++.|...+.++++..|. ..++..+|.++...|++++|+..|+++++.+| +..+|..+|.++...|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 88888999898888888888888 88888888888888888888888888888887 46778888888888888888888
Q ss_pred HHHHHHHHcCC
Q 015351 247 VYERAVEKLAD 257 (408)
Q Consensus 247 ~~~~al~~~p~ 257 (408)
.|+++++.+|+
T Consensus 163 ~~~~al~~~p~ 173 (184)
T 3vtx_A 163 YFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHTTHH
T ss_pred HHHHHHhCCcc
Confidence 88888888765
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=2.6e-23 Score=177.70 Aligned_cols=218 Identities=8% Similarity=0.012 Sum_probs=161.2
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE 202 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 202 (408)
.+..|+.+|..+...|++++|+..|++++...|++..+|..+|.++...|++++|+..|+++++..|. ..++..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35677888888888899999999999999988888888888999998999999999999998888887 78888888888
Q ss_pred HHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH
Q 015351 203 LRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERA 281 (408)
Q Consensus 203 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 281 (408)
...|++++|+..|+++++..| +..++..++.++...|++++|...++++++..|. ++.++..++.++...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888887 4677888888888888888888888888888887 677888888888888888888
Q ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 015351 282 RCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG 354 (408)
Q Consensus 282 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 354 (408)
...|+++++..|.+ ..++..++.++...|+ +++|+..|++++..+|+++.++..++.+....|
T Consensus 179 ~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 179 LSQFAAVTEQDPGH--ADAFYNAGVTYAYKEN--------REKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC--------TTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHhCccc--HHHHHHHHHHHHHccC--------HHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 88888888887776 6677778888888887 445888888888888888888877776655443
No 54
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=7.1e-21 Score=180.15 Aligned_cols=297 Identities=10% Similarity=-0.042 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh----ccCHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEES----QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK----NKFINH 143 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~ 143 (408)
..++|...|+++++. .++.++..+|.++.. .+++++|+..|+++.+. .++.++..+|.++.. .+++++
T Consensus 58 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 346799999999875 678999999999999 99999999999999874 688999999999998 889999
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hhhHHHHHHHH
Q 015351 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEM----LGNVAGARQIFERWMHWMPDQQGWLSYIKFELR----YNEVERARQIY 215 (408)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~ 215 (408)
|+..|+++... .++.++..+|.++.. .+++++|+..|+++++. .+...+..++.++.. .+++++|+.+|
T Consensus 134 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 134 SVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 99999999876 568999999999998 88999999999999986 358899999999998 89999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 015351 216 ERFVQCHPKVSTWIKYAKFEMK----MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER----CKETERARCIYKF 287 (408)
Q Consensus 216 ~~al~~~p~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~ 287 (408)
+++.+.. ++..+..++.++.. .+++++|...|+++++. . ++..+..++.++.. .+++++|...|++
T Consensus 211 ~~a~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 211 RKSATSG-DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 9999864 57788999999987 88999999999999875 2 46788999999998 8999999999999
Q ss_pred HHhhCCCcchHHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHH
Q 015351 288 ALDHIPKGRAEDLYRKFVAFEKQY-----GDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG---NKERA 359 (408)
Q Consensus 288 al~~~p~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---~~~~A 359 (408)
+++.. + ...+..++.++... ++ .++|+.+|+++++. .++.++..+|.++...| ++++|
T Consensus 285 a~~~~--~--~~a~~~Lg~~y~~~~~g~~~~--------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 285 SAEQG--N--SDGQYYLAHLYDKGAEGVAKN--------REQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHTTT--C--HHHHHHHHHHHHHCBTTBCCC--------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHcC--C--HHHHHHHHHHHHcCCCCCcCC--------HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHH
Confidence 98752 2 56777788888765 56 66799999999986 56789999999998866 89999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhh----cCChhHHhhhc
Q 015351 360 REVYERAIANVPPAEEKRYWQRYIYLWINYALYEELD----AGDMERTRDVY 407 (408)
Q Consensus 360 ~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~----~g~~~~A~~~~ 407 (408)
+..|+++++. .++. .+..++.++. . .+++++|...|
T Consensus 351 ~~~~~~a~~~--~~~~---------a~~~Lg~~y~-~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 351 VEWFRKAAAK--GEKA---------AQFNLGNALL-QGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHT--TCHH---------HHHHHHHHHH-HTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHC--CCHH---------HHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 9999999986 3343 5667777774 5 68999998876
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=6.5e-22 Score=172.47 Aligned_cols=236 Identities=10% Similarity=0.048 Sum_probs=211.4
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCchHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK----NKFINHARNVWDRAVTLLPRVDQLW 162 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 162 (408)
+|.++.++..+|.++...|++++|+..|+++++ |+++.++..+|.++.. .+++++|+..|++++... ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 588899999999999999999999999999998 8889999999999999 999999999999999985 68999
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 015351 163 YKYIHMEEM----LGNVAGARQIFERWMHWMPDQQGWLSYIKFELR----YNEVERARQIYERFVQCHPKVSTWIKYAKF 234 (408)
Q Consensus 163 ~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~a~~ 234 (408)
..+|.++.. .+++++|+..|+++++.. ...++..++.++.. .+++++|+.+|+++++.. +...+..++.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~ 155 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 999999999 999999999999999874 68899999999999 999999999999999976 57788999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCcchHHHHHHHHH
Q 015351 235 EMK----MGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER----CKETERARCIYKFALDHIPKGRAEDLYRKFVA 306 (408)
Q Consensus 235 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 306 (408)
+.. .+++++|...|+++++.. .+..+..++.++.. .+++++|+..|+++++..| ...+..++.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~ 226 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----GGGCFNLGA 226 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----HHHHHHHHH
Confidence 998 999999999999999873 46889999999999 9999999999999999755 467788888
Q ss_pred HHHH----cCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 015351 307 FEKQ----YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFD 345 (408)
Q Consensus 307 ~~~~----~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 345 (408)
++.. .++ +++|+..|+++++..|.+...++.
T Consensus 227 ~~~~g~~~~~~--------~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 227 MQYNGEGVTRN--------EKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHTTSSSSCC--------STTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCCcccC--------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8887 777 446999999999999876555443
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=7.2e-22 Score=166.49 Aligned_cols=214 Identities=13% Similarity=0.064 Sum_probs=196.5
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY 198 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 198 (408)
..|.++.+|..+|.++...|++++|+..|++++...|++..+|..+|.++...|++++|...|+++++..|. ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 468889999999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHh-hhHHHHHHHHHHHHH--hCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q 015351 199 IKFELRY-NEVERARQIYERFVQ--CHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER 274 (408)
Q Consensus 199 ~~~~~~~-~~~~~A~~~~~~al~--~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 274 (408)
+.++... |++++|+..|+++++ ..|. ..++..+|.++...|++++|...|+++++..|. ++.++..++.++..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---FPPAFKELARTKML 159 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHH
Confidence 9999999 999999999999999 4443 578999999999999999999999999999998 78999999999999
Q ss_pred cCChHHHHHHHHHHHhhCC-CcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015351 275 CKETERARCIYKFALDHIP-KGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDY 346 (408)
Q Consensus 275 ~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 346 (408)
.|++++|...|++++...| .+ ...+...+.++...|+ .+.|...++.++..+|+++.+...+
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQ--ADDLLLGWKIAKALGN--------AQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999999999988 66 5677778888888888 5568889999999999998876543
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=4.3e-22 Score=171.28 Aligned_cols=214 Identities=11% Similarity=0.033 Sum_probs=198.4
Q ss_pred hccCCC-hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHH
Q 015351 119 EVDYRN-HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWL 196 (408)
Q Consensus 119 ~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 196 (408)
..+|.+ +.+|..+|.++...|++++|+..|++++...|.+..+|..+|.++...|++++|...|+++++..|. ..+|.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 456665 7899999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH--hCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q 015351 197 SYIKFELRYNEVERARQIYERFVQ--CHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEE 273 (408)
Q Consensus 197 ~~~~~~~~~~~~~~A~~~~~~al~--~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 273 (408)
.++.++...|++++|+.+|++++. ..|. ..++..+|.++...|++++|...|+++++..|. ++.++..++.++.
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~ 186 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---QPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHH
Confidence 999999999999999999999999 6664 678999999999999999999999999999998 7899999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 015351 274 RCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFD 345 (408)
Q Consensus 274 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 345 (408)
..|++++|...|+++++..|.+ ...+..++.++...|+ .++|...+++++..+|+++.++..
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~--------~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQN--ARSLLLGIRLAKVFED--------RDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999998876 6788889999999999 667999999999999999887643
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=1.7e-22 Score=165.26 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=163.5
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 015351 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIK 200 (408)
Q Consensus 122 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~ 200 (408)
++++.+|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.+++...|+ ..++..++.
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q 015351 201 FELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETE 279 (408)
Q Consensus 201 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 279 (408)
++...++++.|...+.+++...|+ ..++..+|.++...|++++|++.|+++++.+|. ++.+|..+|.++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG---FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---hhhHHHHHHHHHHHCCCHH
Confidence 999999999999999999999984 788999999999999999999999999999998 7999999999999999999
Q ss_pred HHHHHHHHHHhhCCCc
Q 015351 280 RARCIYKFALDHIPKG 295 (408)
Q Consensus 280 ~A~~~~~~al~~~p~~ 295 (408)
+|+..|+++++..|.+
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999998875
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=2.5e-21 Score=168.78 Aligned_cols=232 Identities=9% Similarity=0.043 Sum_probs=210.2
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM----LGNVAGARQIFERWMHWMPDQQGWL 196 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 196 (408)
+|+++.+++.+|.++...|++++|+..|+++++ |+++.++..+|.++.. .+++++|+..|+++++.. +..++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~ 78 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCH 78 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHH
Confidence 588999999999999999999999999999999 7778999999999999 999999999999999985 688999
Q ss_pred HHHHHHHH----hhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 015351 197 SYIKFELR----YNEVERARQIYERFVQCHPKVSTWIKYAKFEMK----MGEVDRARNVYERAVEKLADDEEAEQLFVAF 268 (408)
Q Consensus 197 ~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 268 (408)
.++.++.. .+++++|+..|+++++.. +..++..+|.++.. .+++++|+..|+++++.. ++..+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHHHH
Confidence 99999999 999999999999999884 78899999999999 999999999999999864 36788999
Q ss_pred HHHHHH----cCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHHHHHHHhhCCCCH
Q 015351 269 AEFEER----CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ----YGDREGIEDAIVGKRRFQYEDEVRKNPMNY 340 (408)
Q Consensus 269 ~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 340 (408)
+.++.. .+++++|...|+++++..+ ...+..++.++.. .++ +++|+..|+++++..| +
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~--------~~~A~~~~~~a~~~~~--~ 218 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKN--------FKEALARYSKACELEN--G 218 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCC--------HHHHHHHHHHHHHTTC--H
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCcc--------HHHHHHHHHHHHhCCC--H
Confidence 999998 9999999999999998632 5678888888888 777 6679999999999866 8
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchh
Q 015351 341 DIWFDYIRLEES----VGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 341 ~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
.++..+|.++.. .+++++|+..|+++++..|++..
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999 99999999999999999887653
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=6e-23 Score=189.82 Aligned_cols=274 Identities=9% Similarity=-0.059 Sum_probs=229.7
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCC-
Q 015351 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD----QLWYKYIHMEEMLGNVAGARQIFERWMHW------MPD- 191 (408)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~- 191 (408)
.....+..+|..+...|++++|+..|++++...|+++ .+|..+|.++...|++++|+..|+++++. .|.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3456677889999999999999999999999999876 58999999999999999999999999987 343
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHP-------KVSTWIKYAKFEMKMGE-----------------VDRARNV 247 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~a~~~~~~~~-----------------~~~A~~~ 247 (408)
..++..++.++...|++++|+..|++++...+ ...++..+|.++...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 78899999999999999999999999998742 24578899999999999 9999999
Q ss_pred HHHHHHHcC---CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc----hHHHHHHHHHHHHHcCCchhHHHH
Q 015351 248 YERAVEKLA---DDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR----AEDLYRKFVAFEKQYGDREGIEDA 320 (408)
Q Consensus 248 ~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~g~~~~~~~~ 320 (408)
++++++..+ +.+....++..+|.++...|++++|...|++++...+... ....+..++.++...|+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------- 278 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ------- 278 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-------
Confidence 999987642 3334567899999999999999999999999998765421 23478888899999999
Q ss_pred HHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhh
Q 015351 321 IVGKRRFQYEDEVRKNPMN------YDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEE 394 (408)
Q Consensus 321 ~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e 394 (408)
+++|+..|++++...|.. ..++..+|.++...|++++|..+|++++...+...... .....+..++.++
T Consensus 279 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~- 353 (411)
T 4a1s_A 279 -FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI---GEARACWSLGNAH- 353 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHH-
T ss_pred -HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH---HHHHHHHHHHHHH-
Confidence 667999999999877644 67889999999999999999999999998765543211 1234667788888
Q ss_pred hhcCChhHHhhhcC
Q 015351 395 LDAGDMERTRDVYQ 408 (408)
Q Consensus 395 ~~~g~~~~A~~~~~ 408 (408)
...|++++|...|+
T Consensus 354 ~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 354 SAIGGHERALKYAE 367 (411)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHH
Confidence 48999999998763
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=8.6e-23 Score=182.80 Aligned_cols=261 Identities=9% Similarity=0.009 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHhc------cCCChHHHHHHHHHHHhccC
Q 015351 71 DYRLRKRKEFEDLIRRVRWNT----GVWIKYAKWEESQKDFNRARSVWERALEV------DYRNHTLWLKYAEVEMKNKF 140 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~ 140 (408)
+.+++|+..|+++++.+|.++ .++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+
T Consensus 19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 345679999999999999984 68889999999999999999999999876 55567899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHhCC----
Q 015351 141 INHARNVWDRAVTLLPRV------DQLWYKYIHMEEMLGN--------------------VAGARQIFERWMHWMP---- 190 (408)
Q Consensus 141 ~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~~p---- 190 (408)
+++|+..+++++...|.. ..++..+|.++...|+ +++|...+++++...+
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~ 178 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999886543 3488999999999999 9999999999987632
Q ss_pred --C-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---
Q 015351 191 --D-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD--- 257 (408)
Q Consensus 191 --~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--- 257 (408)
. ..++..++.++...|++++|+..++++++..+. ..++..+|.++...|++++|...+++++...+.
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 1 567888999999999999999999999987542 237889999999999999999999999987654
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc----chHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 015351 258 DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG----RAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV 333 (408)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 333 (408)
......++..++.++...|++++|...+++++...+.. ....++..++.++...|+ +++|...|++++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~a~ 330 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--------HDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--------hHHHHHHHHHHH
Confidence 22237788999999999999999999999999864432 124577888999999999 667999999999
Q ss_pred hhCCCC
Q 015351 334 RKNPMN 339 (408)
Q Consensus 334 ~~~p~~ 339 (408)
...+..
T Consensus 331 ~~~~~~ 336 (338)
T 3ro2_A 331 EISREV 336 (338)
T ss_dssp HC----
T ss_pred HHHHhh
Confidence 987653
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=1.5e-22 Score=190.28 Aligned_cols=207 Identities=12% Similarity=0.051 Sum_probs=149.5
Q ss_pred cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 105 KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFI-NHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFE 183 (408)
Q Consensus 105 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 183 (408)
+.+++++..++++....|.+..+|..+|.++...|++ ++|+..|+++++.+|++..+|..+|.++...|++++|+..|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467777777777777888888888888888888888 888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHc--------CCHHHHH
Q 015351 184 RWMHWMPDQQGWLSYIKFELRY---------NEVERARQIYERFVQCHPK-VSTWIKYAKFEMKM--------GEVDRAR 245 (408)
Q Consensus 184 ~al~~~p~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~--------~~~~~A~ 245 (408)
++++..|+..++..++.++... |++++|+..|+++++.+|+ ..+|..+|.++... |++++|+
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 8888888777777777777777 7777777777777777763 56677777777666 6666666
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCC
Q 015351 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313 (408)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~ 313 (408)
..|+++++..|....++.+|..+|.++...|++++|...|+++++..|.+ ...+..++.++...|+
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW--PEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHH
Confidence 66666666666111156666666666666666666666666666666655 4455555555554443
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=5.7e-22 Score=193.54 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=164.2
Q ss_pred hcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHH
Q 015351 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 86 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 165 (408)
..|+++.+|..+|.++..+|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++++|++..+|..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHH
Q 015351 166 IHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~ 243 (408)
|.++...|++++|++.|+++++++|+ ..+|..+|.++...|++++|+..|+++++.+|+ ..++..++.++...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999999999999 999999999999999999999999999999995 7889999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 015351 244 ARNVYERAVEKLAD 257 (408)
Q Consensus 244 A~~~~~~al~~~p~ 257 (408)
|.+.++++++..|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 99999999988664
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=5.1e-21 Score=162.11 Aligned_cols=210 Identities=10% Similarity=0.035 Sum_probs=180.6
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDY-RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 165 (408)
.|.++..|...|..+...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..|++++..+|++..+|..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356779999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-H-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---hHHHHHHHHH
Q 015351 166 IHMEEMLGNVAGARQIFERWMHWMPD-Q-------QGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKF 234 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~p~-~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~a~~ 234 (408)
|.++...|++++|+..|+++++..|+ . .+|..+|.++...|++++|+..|+++++..|+ ..++..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999999999998 5 66899999999999999999999999999986 4679999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHH
Q 015351 235 EMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFE 308 (408)
Q Consensus 235 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 308 (408)
+...| ...++++....+.. ...+ .+......+.+++|+..|+++++..|++ ..+...+..+.
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~~---~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~i~ 224 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASSN---KEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNR--TEIKQMQDQVK 224 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTTC---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcccCC---HHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHH
Confidence 87655 44566666665552 2222 2333445677999999999999999998 56666555543
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=5.4e-21 Score=175.12 Aligned_cols=293 Identities=8% Similarity=-0.033 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHhcC---CChHHH--HHHH--HHHHHccCHHHHH-----------HHHHHHHhccCCChHH------H
Q 015351 73 RLRKRKEFEDLIRRVR---WNTGVW--IKYA--KWEESQKDFNRAR-----------SVWERALEVDYRNHTL------W 128 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p---~~~~~~--~~la--~~~~~~g~~~~A~-----------~~~~~al~~~p~~~~~------~ 128 (408)
.++|..+++++.+.-+ .+..+. +.+. +.....++++.+. ..++++- ..|..... +
T Consensus 28 ~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~-~~~~~~~~~l~~~~~ 106 (383)
T 3ulq_A 28 IPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID-KKQARLTGLLEYYFN 106 (383)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH-HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH-hcCCCchhHHHHHHH
Confidence 3457777777654432 344443 2222 2223345555555 6666543 34444333 3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh---CCC---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------HHH
Q 015351 129 LKYAEVEMKNKFINHARNVWDRAVTL---LPR---VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--------QQG 194 (408)
Q Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~ 194 (408)
+..|.++...|++++|+..|++++.. .++ ...++..+|.++...|++++|+..++++++..+. ..+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 44899999999999999999999987 333 4578999999999999999999999999987443 457
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--c-HHHHHH
Q 015351 195 WLSYIKFELRYNEVERARQIYERFVQCHPK-------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD--D-EEAEQL 264 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~-~~~~~~ 264 (408)
+..+|.++...|++++|+..|+++++..+. ..++..+|.++...|++++|+..|+++++..+. + +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 888999999999999999999999987542 247889999999999999999999999994211 1 227889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC---cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHH
Q 015351 265 FVAFAEFEERCKETERARCIYKFALDHIPK---GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD 341 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 341 (408)
+..+|.++...|++++|...+++++...+. ......+..++.++...|+... +.+|+..+++. ...|....
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA-----IQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH-----HHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHHC-cCHHHHHH
Confidence 999999999999999999999999986432 1112335567777777777522 56688888776 33344567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 342 IWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 342 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
++..+|.++...|++++|...|+++++....
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999986443
No 66
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=4.7e-20 Score=160.99 Aligned_cols=227 Identities=10% Similarity=0.084 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc--CHHHHHHHHHHHHhccCCChHHHHHHHHHH----Hhc---cCHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQK--DFNRARSVWERALEVDYRNHTLWLKYAEVE----MKN---KFINHA 144 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A 144 (408)
++|+..++++|..+|.+..+|...+.+....| ++++++..+++++..+|.+..+|...+.+. ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 46999999999999999999999999999999 999999999999999999999999999988 666 789999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCChH--HHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhh------HHHHHHHH
Q 015351 145 RNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVA--GARQIFERWMHWMPD-QQGWLSYIKFELRYNE------VERARQIY 215 (408)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~------~~~A~~~~ 215 (408)
+.++.+++..+|.+..+|...+.+....|.++ ++++++.++++.+|. ..+|...+.+....|. +++++..+
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999998 999999999999999 9999999999888887 99999999
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 015351 216 ERFVQCHP-KVSTWIKYAKFEMKMGEVDR-ARNVYERAVEKL---ADDEEAEQLFVAFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 216 ~~al~~~p-~~~~~~~~a~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
++++..+| +..+|..++.++...|+..+ ...++.++++.. |. ++.++..++.++.+.|+.++|.++|+.+.+
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT---SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999 57899999999999887554 556777777655 55 688999999999999999999999999997
Q ss_pred -hCCCcchHHHHHHHH
Q 015351 291 -HIPKGRAEDLYRKFV 305 (408)
Q Consensus 291 -~~p~~~~~~~~~~~~ 305 (408)
.+|.. ...|...+
T Consensus 287 ~~Dpir--~~yW~~~~ 300 (306)
T 3dra_A 287 KYNPIR--SNFWDYQI 300 (306)
T ss_dssp TTCGGG--HHHHHHHH
T ss_pred ccChHH--HHHHHHHH
Confidence 68876 66776544
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=1.5e-19 Score=153.04 Aligned_cols=212 Identities=9% Similarity=0.021 Sum_probs=164.9
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP-RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY 198 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 198 (408)
.|.++..|+..|.++...|++++|+..|++++...| .+..++..+|.++...|++++|+..|+++++.+|+ ..+|..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356678899999999999999999999999999988 77888888999999999999999999999999988 8888999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCC-h-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 015351 199 IKFELRYNEVERARQIYERFVQCHPK-V-------STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAE 270 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~~p~-~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 270 (408)
|.++...|++++|+..|+++++..|+ . .++..+|.++...|++++|+..|+++++..|++ ..+.+|..+|.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK-WKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH-HHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc-ccHHHHHHHHH
Confidence 99999999999999999999998884 4 457888888888888888888888888876641 03678888888
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015351 271 FEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLE 350 (408)
Q Consensus 271 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 350 (408)
++... +...++++....+.+ ...+.... ....+. +++|+..|+++++.+|+++.+...++.+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~--~~~~~~~~--~~~~~~--------~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSN--KEKYASEK--AKADAA--------FKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTC--HHHHHHHH--HHHHHH--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCC--HHHHHHHH--HHHHHH--------HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 87654 345566666665554 22222221 122222 66788888888888888888877777664
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=3.5e-21 Score=188.01 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=164.7
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY 198 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 198 (408)
..|++++++..+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++|+ ..+|..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q 015351 199 IKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKE 277 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 277 (408)
|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++..|+ ++.++.+++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD---FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHhhhhhHHHhccc
Confidence 99999999999999999999999994 789999999999999999999999999999999 79999999999999999
Q ss_pred hHHHHHHHHHHHhhCCC
Q 015351 278 TERARCIYKFALDHIPK 294 (408)
Q Consensus 278 ~~~A~~~~~~al~~~p~ 294 (408)
+++|.+.|+++++..|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999986543
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=7.5e-22 Score=174.99 Aligned_cols=253 Identities=17% Similarity=0.118 Sum_probs=148.3
Q ss_pred hcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Q 015351 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV--------DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL-- 155 (408)
Q Consensus 86 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 155 (408)
.+|....+|..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+..|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35666677777777777778888888888777763 55556677777777777777777777777777652
Q ss_pred ------CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CC-ChHH
Q 015351 156 ------PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQC-HP-KVST 227 (408)
Q Consensus 156 ------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p-~~~~ 227 (408)
|....++..+|.++...|++++|...|+++++... +.... .| ...+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE--------------------------KVLGKDHPDVAKQ 155 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--------------------------HHHCTTCHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH--------------------------HhcCCCChHHHHH
Confidence 33445566666666666666666666666655420 00000 01 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc-------
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKL-----ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG------- 295 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------- 295 (408)
+..+|.++...|++++|+.+|+++++.. ++.+....++..++.++...|++++|...|+++++..|..
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5555555555555555555555555541 1122245556666666666666666666666666532110
Q ss_pred chHHHHHHHHHH------HHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 296 RAEDLYRKFVAF------EKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 296 ~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
....+|.....+ ....+. +.++...+.+++..+|..+.+|..+|.++...|++++|..+|+++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTS--------FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CC--------SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHH--------HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 001122222222 222233 334677788888888999999999999999999999999999999988
Q ss_pred CCC
Q 015351 370 VPP 372 (408)
Q Consensus 370 ~p~ 372 (408)
.|.
T Consensus 308 ~~~ 310 (311)
T 3nf1_A 308 RKQ 310 (311)
T ss_dssp HC-
T ss_pred hhc
Confidence 664
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=5.9e-21 Score=178.37 Aligned_cols=295 Identities=7% Similarity=-0.034 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHH---H
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQK-----DFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHA---R 145 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A---~ 145 (408)
++|...|+++++. ++.++..+|.++...| ++++|...|++++. ++++.+++.+|.++...+....+ .
T Consensus 55 ~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 55 KQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA--NGEGNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH--TTCSSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 6777777777755 5667777777555544 67777777777776 34455777777777776654333 3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHhh---hHHHHHHHHHHH
Q 015351 146 NVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI----FERWMHWMPDQQGWLSYIKFELRYN---EVERARQIYERF 218 (408)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~----~~~al~~~p~~~~~~~~~~~~~~~~---~~~~A~~~~~~a 218 (408)
..+.++.. +.++.+++.+|.++...+.++++... ++.+...+ +.++..++.++...| ++++|+..|+++
T Consensus 130 ~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~--~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 130 QQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT--DICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC--TTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 33333332 23466778888888888765554444 44443333 458889999999899 999999999999
Q ss_pred HHhCC-ChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-H--HHcCChHHHHHHHHHHHh
Q 015351 219 VQCHP-KVSTWIKYAKFEMKM----GEVDRARNVYERAVEKLADDEEAEQLFVAFAEF-E--ERCKETERARCIYKFALD 290 (408)
Q Consensus 219 l~~~p-~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~al~ 290 (408)
.+..+ ....+..++.++... +++++|+..|+++. |. ++..++.++.+ + ...+++++|..+|+++.+
T Consensus 206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 99876 456678899988655 68999999999987 55 68899999998 4 468999999999999987
Q ss_pred hCCCcchHHHHHHHHHHHHHcCC--chhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 015351 291 HIPKGRAEDLYRKFVAFEKQYGD--REGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES----VGNKERAREVYE 364 (408)
Q Consensus 291 ~~p~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~ 364 (408)
.. + +..+..++.++. .|. ... +++|+.+|+++. |.++.+++.+|.+|.. ..++++|...|+
T Consensus 280 ~g--~--~~A~~~Lg~~y~-~G~g~~~d-----~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 280 AD--Q--PRAELLLGKLYY-EGKWVPAD-----AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp TT--C--HHHHHHHHHHHH-HCSSSCCC-----HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred CC--C--HHHHHHHHHHHH-cCCCCCCC-----HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 43 3 567777888777 441 111 678999999998 8899999999999876 349999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcC---ChhHHhhhc
Q 015351 365 RAIANVPPAEEKRYWQRYIYLWINYALYEELDAG---DMERTRDVY 407 (408)
Q Consensus 365 ~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g---~~~~A~~~~ 407 (408)
++.+.. ++. .+..++.++....| ++++|...|
T Consensus 347 ~Aa~~g--~~~---------A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 347 TAARNG--QNS---------ADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT--CTT---------HHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHhhC--hHH---------HHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 998753 332 35567777742234 677777655
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.8e-20 Score=162.20 Aligned_cols=197 Identities=14% Similarity=0.053 Sum_probs=158.0
Q ss_pred HHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc--
Q 015351 84 IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV-- 158 (408)
Q Consensus 84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-- 158 (408)
...+|.++..++.+|..+...|++++|+..|++++..+|.+ +.+++.+|.++...|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 35678899999999999999999999999999999999998 8999999999999999999999999999998854
Q ss_pred -hHHHHHHHHHHHH--------cCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHH
Q 015351 159 -DQLWYKYIHMEEM--------LGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTW 228 (408)
Q Consensus 159 -~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 228 (408)
+.+++.+|.++.. .|++++|+..|+++++..|+ ...+..+..+....+.. ...+
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~----------------~~~~ 151 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL----------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH----------------HHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH----------------HHHH
Confidence 5688999999999 99999999999999999987 44443332222111111 1236
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCCcc
Q 015351 229 IKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC----------KETERARCIYKFALDHIPKGR 296 (408)
Q Consensus 229 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~ 296 (408)
+.+|.++...|++++|+..|+++++..|+++..+.++..+|.++... |++++|+..|+++++..|++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 77788888888888888888888888887655677888888888766 778888888888888888764
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=7e-21 Score=168.70 Aligned_cols=221 Identities=11% Similarity=0.063 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCChHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRR--------VRWNTGVWIKYAKWEESQKDFNRARSVWERALEV--------DYRNHTLWLKYAEV 134 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~ 134 (408)
+.+++|...|+++++. +|....++..+|.++...|++++|+..|++++.. .|....++..+|.+
T Consensus 41 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 120 (311)
T 3nf1_A 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4567899999999984 6777889999999999999999999999999976 36667899999999
Q ss_pred HHhccCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCC-HHHHHH
Q 015351 135 EMKNKFINHARNVWDRAVTLL--------PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW--------MPD-QQGWLS 197 (408)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~-~~~~~~ 197 (408)
+...|++++|+..|++++... |....++..+|.++...|++++|+..|+++++. .|. ..++..
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (311)
T 3nf1_A 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999884 556678999999999999999999999999987 444 778899
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCC----------hHHH------HHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH
Q 015351 198 YIKFELRYNEVERARQIYERFVQCHPK----------VSTW------IKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 261 (408)
++.++...|++++|+.+|+++++..+. ...| ...+..+...+.+.++...+++++...|. .
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~ 277 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT---V 277 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH---H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch---H
Confidence 999999999999999999999987431 1122 23334445566777888888888877666 7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 015351 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPK 294 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 294 (408)
..++..+|.++...|++++|..+|+++++..|.
T Consensus 278 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 278 TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 889999999999999999999999999887654
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.85 E-value=3.3e-19 Score=166.47 Aligned_cols=275 Identities=9% Similarity=-0.036 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHhccC----HHHHHH
Q 015351 72 YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV-DYRNHTLWLKYAEVEMKNKF----INHARN 146 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~----~~~A~~ 146 (408)
..++|...|+++++ +.++.++..+|.+|...+..+.+...++..... .+.++.+++.+|.++...+. .+.+..
T Consensus 89 ~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 89 EHHEAESLLKKAFA--NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHH--TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 44567777777766 344456677777777665544443333333321 23456667777777777663 344444
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh----hhHHHHHHHHHHH
Q 015351 147 VWDRAVTLLPRVDQLWYKYIHMEEMLG---NVAGARQIFERWMHWMPD-QQGWLSYIKFELRY----NEVERARQIYERF 218 (408)
Q Consensus 147 ~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~----~~~~~A~~~~~~a 218 (408)
+++.+...+|. ++..+|.++...| ++++|+..|+++.+..|. ...+..++.++... +++++|+.+|+++
T Consensus 167 ~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 167 ICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 44444444433 6677777777777 677777777777776666 55556666666543 4677777777776
Q ss_pred HHhCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHh
Q 015351 219 VQCHPKVSTWIKYAKF-E--MKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCK-----ETERARCIYKFALD 290 (408)
Q Consensus 219 l~~~p~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~ 290 (408)
. ..++..+..+|.+ + ...+++++|...|+++.+. . ++..++.+|.++. .| ++++|..+|+++.
T Consensus 244 a--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 244 A--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp G--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred c--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 6 2246667777766 3 3566777777777777643 2 4666777777766 44 7777777777776
Q ss_pred hCCCcchHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 015351 291 HIPKGRAEDLYRKFVAFEKQY-GDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEES----VGNKERAREVYER 365 (408)
Q Consensus 291 ~~p~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~ 365 (408)
+.+ +..+..++.++..- |-... .++|+.+|+++.+ +.++.+.+.+|.+|.. .+++.+|...|++
T Consensus 315 --~g~--~~A~~~Lg~~y~~G~g~~~d-----~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 315 --GRE--VAADYYLGQIYRRGYLGKVY-----PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp --TTC--HHHHHHHHHHHHTTTTSSCC-----HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred --CCC--HHHHHHHHHHHHCCCCCCcC-----HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 444 45566666655541 11111 5567777777765 3456666777777653 3467777777777
Q ss_pred HHhcCC
Q 015351 366 AIANVP 371 (408)
Q Consensus 366 al~~~p 371 (408)
|.+..+
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 776543
No 74
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=3.9e-20 Score=154.27 Aligned_cols=168 Identities=10% Similarity=0.101 Sum_probs=141.8
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHH----------------HHHHHHhccCHHHHHHHHHHHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLK----------------YAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
+++.++..|..+...|++++|+..|++++..+|+++.+|+. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678888999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCCChHHHHH
Q 015351 154 LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNE--VERARQIYERFVQCHPKVSTWIK 230 (408)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~ 230 (408)
.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|. ...+...|++++...|....+..
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 99999999999999999999999999999999999998 8899999988876654 45567777776643333345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
.|..+...|++++|+..|+++++..|+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 787888888889999999999888887
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=5.5e-19 Score=152.81 Aligned_cols=174 Identities=13% Similarity=0.023 Sum_probs=143.7
Q ss_pred HhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---
Q 015351 118 LEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--- 191 (408)
Q Consensus 118 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 191 (408)
....|.++..++.+|..+...|++++|+..|++++...|++ +.+++.+|.++...|++++|+..|+++++..|+
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 45688999999999999999999999999999999999998 889999999999999999999999999999885
Q ss_pred -HHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH
Q 015351 192 -QQGWLSYIKFELR--------YNEVERARQIYERFVQCHPKV-STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA 261 (408)
Q Consensus 192 -~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 261 (408)
..++..+|.++.. .|++++|+..|+++++..|+. ..+..+..+ ... .+. .
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~--------------~~~---~~~---~ 147 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI--------------REL---RAK---L 147 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH--------------HHH---HHH---H
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH--------------HHH---HHH---H
Confidence 6788999999999 999999999999999999853 232222211 111 111 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc-hHHHHHHHHHHHHHc
Q 015351 262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGR-AEDLYRKFVAFEKQY 311 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~ 311 (408)
...++.+|.++...|++++|+..|+++++..|++. ....+..++.++...
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 45588999999999999999999999999999854 356777777777655
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=3.2e-18 Score=156.05 Aligned_cols=272 Identities=11% Similarity=0.017 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChH-----HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch------H
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHT-----LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD------Q 160 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~ 160 (408)
.++...|.++...|++++|...+++++...|.+.. ++..+|.++...|++++|...+++++...|... .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45677788889999999999999999998876542 567888999999999999999999998765432 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC------h
Q 015351 161 LWYKYIHMEEMLGNVAGARQIFERWMHWM--------PD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK------V 225 (408)
Q Consensus 161 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~ 225 (408)
++..+|.++...|++++|...++++++.. |. ...+..++.++...|++++|...+++++...+. .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 46788999999999999999999999864 22 456777899999999999999999999998763 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHH-----HHHHHHHHcCChHHHHHHHHHHHhhCCCcc--hH
Q 015351 226 STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFV-----AFAEFEERCKETERARCIYKFALDHIPKGR--AE 298 (408)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~ 298 (408)
..+..++.++...|++++|...+++++...+... .+..|. ..+.++...|++++|...+++++...|... ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 4678899999999999999999999998754311 111121 344567799999999999999998665431 13
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 015351 299 DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM------NYDIWFDYIRLEESVGNKERAREVYERAIANVPP 372 (408)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 372 (408)
..+..++.++...|+ +++|...+++++...+. ...++..++.++...|++++|...+++++...+.
T Consensus 254 ~~~~~la~~~~~~g~--------~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 254 GQWRNIARAQILLGE--------FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 356677888888898 55688888888776432 2247788999999999999999999999987553
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=2e-19 Score=164.75 Aligned_cols=248 Identities=10% Similarity=0.049 Sum_probs=200.8
Q ss_pred HHHHHHHHhcCCChHHHHH------HHHHHHHccCHHHHHHHHHHHHhc------cCCChHHHHHHHHHHHhccCHHHHH
Q 015351 78 KEFEDLIRRVRWNTGVWIK------YAKWEESQKDFNRARSVWERALEV------DYRNHTLWLKYAEVEMKNKFINHAR 145 (408)
Q Consensus 78 ~~~~~~l~~~p~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~ 145 (408)
..++. +...|.+...+.. .|..+...|++++|+..|++++.. .+....++..+|.++...|++++|+
T Consensus 85 ~~~~~-i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~ 163 (383)
T 3ulq_A 85 DLLLE-IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163 (383)
T ss_dssp HHHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55554 3445554444444 899999999999999999999986 2335688999999999999999999
Q ss_pred HHHHHHHHhCCCc-------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhhHHHH
Q 015351 146 NVWDRAVTLLPRV-------DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNEVERA 211 (408)
Q Consensus 146 ~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A 211 (408)
..+++++...+.. ..++..+|.++...|++++|+..|+++++..+. ..++..+|.++...|++++|
T Consensus 164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999985433 357889999999999999999999999987543 45889999999999999999
Q ss_pred HHHHHHHHHh-----C-CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcCC---hH
Q 015351 212 RQIYERFVQC-----H-PK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD--DEEAEQLFVAFAEFEERCKE---TE 279 (408)
Q Consensus 212 ~~~~~~al~~-----~-p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~---~~ 279 (408)
+..|+++++. . |. ..++..+|.++...|++++|...++++++..+. ++.....+..++.++...|+ ++
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999994 4 42 567899999999999999999999999987542 22233446678999999999 78
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC
Q 015351 280 RARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337 (408)
Q Consensus 280 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 337 (408)
+|+..+++. . .......++..++.++...|+ +++|...|++++....
T Consensus 324 ~al~~~~~~-~--~~~~~~~~~~~la~~y~~~g~--------~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 324 GFFDFLESK-M--LYADLEDFAIDVAKYYHERKN--------FQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHT-T--CHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC-c--CHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHH
Confidence 888888776 1 111235678889999999999 6679999999988644
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=3.8e-20 Score=181.47 Aligned_cols=186 Identities=10% Similarity=-0.048 Sum_probs=168.7
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHH--------hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL--------EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP 156 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 156 (408)
..+|+++.++...+ ...|++++|+..|++++ +.+|++..+|..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34788888877666 77899999999999999 89999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHH
Q 015351 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKF 234 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~ 234 (408)
++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++ +..|+++++.+| +..+|..+|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999998 8999999999999999999 999999999998 47889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q 015351 235 EMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKE 277 (408)
Q Consensus 235 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 277 (408)
+...|++++|+..|+++++..|+ +..+|.+++.++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRH---FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTT---HHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcc---cHHHHHHHHHHHHccCC
Confidence 99999999999999999999998 89999999999877665
No 79
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.4e-21 Score=175.79 Aligned_cols=286 Identities=10% Similarity=0.035 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+..++|...+++. +++.+|..+|..+...|++++|+..|.++ .++..|...+..+...|++++|+..++.
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3346799999887 33469999999999999999999999874 4566899999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIK 230 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 230 (408)
+.+..++ +.+...++.+|.+.|+++++.++++ .|+...|..+|..+...|.+++|+.+|.++ +.|..
T Consensus 87 ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~ 153 (449)
T 1b89_A 87 ARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT-------TCHHH
T ss_pred HHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHH
Confidence 9886555 7788899999999999999988885 367779999999999999999999999977 57899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH
Q 015351 231 YAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ 310 (408)
Q Consensus 231 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 310 (408)
++.++.+.|++++|.+.++++ . ++.+|...+..+...|+++.|..+... +...|+. ...++.++.+
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA-----~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-----l~~lv~~Yek 219 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA-----N---STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-----LEELINYYQD 219 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH-----T---CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-----HHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc-----C---CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-----HHHHHHHHHH
Confidence 999999999999999999998 2 589999999999999999999777765 3344543 3357788899
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 015351 311 YGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESV--GNKERAREVYERAIANVPPAEEKRYWQRYIYLWIN 388 (408)
Q Consensus 311 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~ 388 (408)
.|. +++|+.++++++..++.+..+|..++.++.+- ++..+.++.|...+...| ..-...-..+|..
T Consensus 220 ~G~--------~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k----~~~~~~~~~~w~e 287 (449)
T 1b89_A 220 RGY--------FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK----VLRAAEQAHLWAE 287 (449)
T ss_dssp TTC--------HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH----HHHHHHTTTCHHH
T ss_pred CCC--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHH
Confidence 998 66799999999999999999999999998764 355666666665544333 0000011125666
Q ss_pred HHHHhhhhcCChhHHhhh
Q 015351 389 YALYEELDAGDMERTRDV 406 (408)
Q Consensus 389 ~a~~~e~~~g~~~~A~~~ 406 (408)
+.-++ .+.|+++.|..+
T Consensus 288 ~~~ly-~~~~e~d~A~~t 304 (449)
T 1b89_A 288 LVFLY-DKYEEYDNAIIT 304 (449)
T ss_dssp HHHHH-HHTTCHHHHHHH
T ss_pred HHHHH-HhhchHHHHHHH
Confidence 66666 478999998765
No 80
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=5.2e-18 Score=148.09 Aligned_cols=231 Identities=12% Similarity=0.077 Sum_probs=206.7
Q ss_pred CHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCchHHHHHHHHHH----HHc---CChH
Q 015351 106 DFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK--FINHARNVWDRAVTLLPRVDQLWYKYIHME----EML---GNVA 176 (408)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----~~~---~~~~ 176 (408)
..++|+.+++++|..+|++..+|...+.+....| .+++++..+.+++..+|++..+|...+.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3468999999999999999999999999999999 999999999999999999999999999998 666 7899
Q ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCC------HHHHHH
Q 015351 177 GARQIFERWMHWMPD-QQGWLSYIKFELRYNEVE--RARQIYERFVQCHP-KVSTWIKYAKFEMKMGE------VDRARN 246 (408)
Q Consensus 177 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~------~~~A~~ 246 (408)
+++.++.++++.+|. ..+|...+-+....|.++ +++.+++++++.+| +..+|...+.++...+. ++++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 999999999999999 999999999999999888 99999999999998 57899999999888887 899999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhC---CCcchHHHHHHHHHHHHHcCCchhHHHHHH
Q 015351 247 VYERAVEKLADDEEAEQLFVAFAEFEERCKETER-ARCIYKFALDHI---PKGRAEDLYRKFVAFEKQYGDREGIEDAIV 322 (408)
Q Consensus 247 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (408)
.+.+++..+|. +..+|..++.++...|+... +...+.+++... |.+ +..+..++.++.+.|+ .
T Consensus 208 ~~~~aI~~~p~---n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~al~~la~~~~~~~~--------~ 274 (306)
T 3dra_A 208 YVKDKIVKCPQ---NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS--SFALETLAKIYTQQKK--------Y 274 (306)
T ss_dssp HHHHHHHHCSS---CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC--HHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHhCCC---CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHccCC--------H
Confidence 99999999999 89999999999999888555 556777777654 444 6788888888888888 6
Q ss_pred HHHHHHHHHHHh-hCCCCHHHHHHHHHH
Q 015351 323 GKRRFQYEDEVR-KNPMNYDIWFDYIRL 349 (408)
Q Consensus 323 ~~A~~~~~~al~-~~p~~~~~~~~~~~~ 349 (408)
++|+++|+.+.. .+|-....|...+..
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 679999999997 799999999877654
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=4.6e-19 Score=144.30 Aligned_cols=167 Identities=10% Similarity=-0.006 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
...|..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++..+|..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677888888888999999999999988888888888888888888899999999999998888888888888888888
Q ss_pred HcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 171 MLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVY 248 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~ 248 (408)
..|++++|...|+++++..|. ..++..++.++...|++++|+.+|+++++..| +..++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888888888877 77777778777778888888888888877776 3567777777777777788888877
Q ss_pred HHHHHHcCC
Q 015351 249 ERAVEKLAD 257 (408)
Q Consensus 249 ~~al~~~p~ 257 (408)
+++++..|+
T Consensus 168 ~~~~~~~~~ 176 (186)
T 3as5_A 168 KKANELDEG 176 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHcCCC
Confidence 777777665
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=1.7e-19 Score=158.60 Aligned_cols=251 Identities=12% Similarity=0.100 Sum_probs=176.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHH--ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEES--QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
|..++.++-+.-+.+...| .+ +.. .+++++|...|+++ +.++...|++++|+..|.+++.
T Consensus 4 a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555666655555543333 11 111 12477777777776 4456677778888888887777
Q ss_pred hCCC------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Q 015351 154 LLPR------VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRY-NEVERARQIYERFV 219 (408)
Q Consensus 154 ~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~-~~~~~A~~~~~~al 219 (408)
+.+. ...+|..+|.++...|++++|+..|++++++.|. ..++..+|.++... |++++|+..|++++
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 6421 2457778888888888888888888888876543 35778888888886 99999999999999
Q ss_pred HhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 220 QCHPK-------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE----AEQLFVAFAEFEERCKETERARCIYKFA 288 (408)
Q Consensus 220 ~~~p~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a 288 (408)
+..|. ..++..+|.++...|++++|+..|+++++..|.... ....+..+|.++...|++++|+..|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87652 356888999999999999999999999998887421 2347889999999999999999999999
Q ss_pred HhhCCCcchH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015351 289 LDHIPKGRAE---DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLE 350 (408)
Q Consensus 289 l~~~p~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 350 (408)
+...|..... ..+..++..+. .++... +.+|+..|++++..+|.+..++..+-..+
T Consensus 226 l~l~p~~~~~~~~~~l~~l~~~~~-~~~~~~-----~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 226 QSEDPNFADSRESNFLKSLIDAVN-EGDSEQ-----LSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp GCC---------HHHHHHHHHHHH-TTCTTT-----HHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHH-cCCHHH-----HHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 9988874221 12333344332 344333 67799999999999887777766655544
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=9.7e-20 Score=143.35 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 70 ADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
++..++|+..|++++..+|.++..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 45567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCC-HHHHHHHHHHHHHhhh
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI-FERWMHWMPD-QQGWLSYIKFELRYNE 207 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~-~~~~~~~~~~~~~~~~ 207 (408)
++++++|+++.+|..+|.++...|++++|... ++++++++|+ +.+|...+.++...|+
T Consensus 90 ~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888888888888888888888766654 5788888888 7777777777766653
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=2.5e-17 Score=164.59 Aligned_cols=252 Identities=10% Similarity=0.056 Sum_probs=179.8
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
.+++.+|..+|..+...|++++|+..|.++ +++..|...+.++.+.|++++|++.|..+....++ +.+-..+|.
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Laf 1175 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIF 1175 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHH
Confidence 477899999999999999999999999886 78888999999999999999999999988877644 222223555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHH
Q 015351 168 MEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNV 247 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~ 247 (408)
.|.+.++++. .+.| + ..++...|..+|..+...|++++|..+|.++ ..|..++.++.+.|++++|.+.
T Consensus 1176 aYAKl~rlee-le~f---I-~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAE-LEEF---I-NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHH-HHHH---H-hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHH
Confidence 5555555553 2222 1 1233444555666666666666666666664 3556666666666666666666
Q ss_pred HHHHHHHcCC----------------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHH
Q 015351 248 YERAVEKLAD----------------------DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFV 305 (408)
Q Consensus 248 ~~~al~~~p~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 305 (408)
++++....+- ...+++.+..++.+|...|.+++|+.++++++...|.+ ..+|..++
T Consensus 1244 arKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH--~gmftELa 1321 (1630)
T 1xi4_A 1244 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH--MGMFTELA 1321 (1630)
T ss_pred HHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH--hHHHHHHH
Confidence 6655322110 00024445578888999999999999999999988776 78888888
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 306 AFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP-----MNYDIWFDYIRLEESVGNKERAREVYER 365 (408)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 365 (408)
.++.+..-.. ..++.+.|...+...| .+..+|..+..+|.+.|+++.|...+-.
T Consensus 1322 iLyaKy~pek------lmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1322 ILYSKFKPQK------MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHhCCHHH------HHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 8877654322 5567888888888777 7889999999999999999999954433
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=3.3e-18 Score=156.27 Aligned_cols=235 Identities=13% Similarity=0.051 Sum_probs=192.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCC---C---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------H
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLP---R---VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--------Q 192 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~ 192 (408)
.++..|..+...|++++|+..|++++...+ + ...++..+|.++...|+++.|...++++++..+. .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999998742 2 3568899999999999999999999999986442 4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HcCCcHH
Q 015351 193 QGWLSYIKFELRYNEVERARQIYERFVQCHP---K----VSTWIKYAKFEMKMGEVDRARNVYERAVE-----KLADDEE 260 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~ 260 (408)
.++..+|.++...|++++|+..|+++++..+ + ..++..+|.++...|++++|+..|+++++ ..|.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~--- 259 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL--- 259 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh---
Confidence 5778899999999999999999999998642 2 34688999999999999999999999999 4454
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC
Q 015351 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPK---GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 337 (408)
...++..+|.++...|++++|...++++++..+. ......+..+..++...|+... +.+|+..+++. ...|
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~-----~~~al~~~~~~-~~~~ 333 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK-----IHDLLSYFEKK-NLHA 333 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH-----HHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHhC-CChh
Confidence 6889999999999999999999999999997543 2223445555556655665422 55677777762 2234
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 015351 338 MNYDIWFDYIRLEESVGNKERAREVYERAIANV 370 (408)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 370 (408)
....++..+|.++...|++++|...|+++++..
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999998753
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=3.9e-19 Score=156.34 Aligned_cols=240 Identities=13% Similarity=0.043 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHh--ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 109 RARSVWERALEVDYRNHTLWLKYAEVEMK--NKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWM 186 (408)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 186 (408)
+|.+++.++-+.-+.+...| .+ +.. .+++++|...|.++ +.++...|++++|...|++++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Confidence 57788888888777654444 22 222 22599999999998 556788999999999999999
Q ss_pred HhCC-----C--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 015351 187 HWMP-----D--QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-------VSTWIKYAKFEMKM-GEVDRARNVYERA 251 (408)
Q Consensus 187 ~~~p-----~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~a~~~~~~-~~~~~A~~~~~~a 251 (408)
.+.+ . ..++..+|.++...|++++|+..|+++++..+. ..++..+|.++... |++++|+..|+++
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 8742 2 578999999999999999999999999998752 35788999999996 9999999999999
Q ss_pred HHHcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcch-----HHHHHHHHHHHHHcCCchhHHHHHHH
Q 015351 252 VEKLADD---EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA-----EDLYRKFVAFEKQYGDREGIEDAIVG 323 (408)
Q Consensus 252 l~~~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~ 323 (408)
++..|.. .....++..+|.++...|++++|+..|++++...|.+.. ...+..++.++...|+ ++
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~ 216 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--------AV 216 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--------HH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--------HH
Confidence 9987742 122567899999999999999999999999998887532 2367888888999999 66
Q ss_pred HHHHHHHHHHhhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCch
Q 015351 324 KRRFQYEDEVRKNPMNYDI-----WFDYIRLEE--SVGNKERAREVYERAIANVPPAE 374 (408)
Q Consensus 324 ~A~~~~~~al~~~p~~~~~-----~~~~~~~~~--~~g~~~~A~~~~~~al~~~p~~~ 374 (408)
+|+..|++++..+|..... +..++..+. ..+++++|+..|++++..+|...
T Consensus 217 ~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 7999999999999986653 444555554 45679999999999988877665
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=5.3e-18 Score=143.13 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=148.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchH---HHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH---TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ---LWY 163 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 163 (408)
++..++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456788899999999999999999999999988874 78999999999999999999999999999998764 788
Q ss_pred HHHHHHHHc------------------CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 164 KYIHMEEML------------------GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 164 ~~~~~~~~~------------------~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
.+|.++... |++++|+..|+++++..|+ ..++..+..+....+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~---------------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL---------------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH----------------
Confidence 888887763 3455555555555555554 22222111110000000
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 225 VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 225 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
......+|.++...|++++|+..|+++++..|+++..+.++..++.++.+.|++++|+..++++....|.+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01225678899999999999999999999999976667899999999999999999999999998877765
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=5.5e-20 Score=144.76 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=113.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChH
Q 015351 97 YAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVA 176 (408)
Q Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 176 (408)
||.++...|++++|+..+++++..+|.++..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56777778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHH-HHHHHHhCCC-hHHHHHHHHHHHHcCC
Q 015351 177 GARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQI-YERFVQCHPK-VSTWIKYAKFEMKMGE 240 (408)
Q Consensus 177 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~-~~~~~~~a~~~~~~~~ 240 (408)
+|+..|+++++++|+ ..+|..+|.++...|++++|... ++++++.+|+ +.++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888888887 77888888888877777665554 4778887773 5666666776666553
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.82 E-value=5.2e-19 Score=147.38 Aligned_cols=162 Identities=11% Similarity=0.006 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHH----------------HHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIK----------------YAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEM 136 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 136 (408)
++.|+..|+++++.+|+++.+|.. +|.++...|++++|+..|+++++.+|+++.+|..+|.++.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 99 (208)
T 3urz_A 20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV 99 (208)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 466999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 015351 137 KNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN--VAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQI 214 (408)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~ 214 (408)
..|++++|+..|+++++++|+++.+|..+|.++...|+ ...+...|.+++...|....+...+..+...|++++|+..
T Consensus 100 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~ 179 (208)
T 3urz_A 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179 (208)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999999999999999999999877664 4556777887765433355677888888889999999999
Q ss_pred HHHHHHhCCChHHHHHHHHH
Q 015351 215 YERFVQCHPKVSTWIKYAKF 234 (408)
Q Consensus 215 ~~~al~~~p~~~~~~~~a~~ 234 (408)
|+++++..|+......+..+
T Consensus 180 ~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 180 LQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 99999999987665555543
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=6.4e-19 Score=172.80 Aligned_cols=186 Identities=11% Similarity=-0.055 Sum_probs=170.4
Q ss_pred hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015351 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAV--------TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP 190 (408)
Q Consensus 119 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 190 (408)
..+|+++.+++..+ ...|++++|+..|++++ ..+|++..+|..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46788888887766 78899999999999999 89999999999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 015351 191 D-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAF 268 (408)
Q Consensus 191 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 268 (408)
+ ..+|..+|.++...|++++|+..|+++++.+| +..++..+|.++...|++++ +..|+++++.+|+ +..+|+++
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~---~~~a~~~l 540 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG---VISAAFGL 540 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT---CHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc---hHHHHHHH
Confidence 9 99999999999999999999999999999999 47889999999999999999 9999999999999 78999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCC
Q 015351 269 AEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313 (408)
Q Consensus 269 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~ 313 (408)
|.++...|++++|+..|+++++..|.+ ...+..++.++...+.
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~~--~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRHF--TTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTTH--HHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCccc--HHHHHHHHHHHHccCC
Confidence 999999999999999999999999987 6788888887755444
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=1.8e-18 Score=140.83 Aligned_cols=169 Identities=12% Similarity=0.030 Sum_probs=160.4
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE 202 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 202 (408)
...++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|...++++++..|. ..++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHH
Q 015351 203 LRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERA 281 (408)
Q Consensus 203 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 281 (408)
...|++++|..+|++++...| +..++..+|.++...|++++|...++++++..|. ++.++..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999988 5788999999999999999999999999999998 789999999999999999999
Q ss_pred HHHHHHHHhhCCCc
Q 015351 282 RCIYKFALDHIPKG 295 (408)
Q Consensus 282 ~~~~~~al~~~p~~ 295 (408)
...++++++..|.+
T Consensus 164 ~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 164 LPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999987775
No 92
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=3.5e-17 Score=163.63 Aligned_cols=266 Identities=11% Similarity=0.066 Sum_probs=190.1
Q ss_pred HHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHH
Q 015351 101 EESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ 180 (408)
Q Consensus 101 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 180 (408)
+...|++++|.++++++ +.+.+|..+|..+...|++++|+..|.++ +++..|...+.++.+.|++++|++
T Consensus 1086 ie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1086 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHH
Confidence 33666677777777654 66888999999999999999999999776 667888889999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHH
Q 015351 181 IFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260 (408)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 260 (408)
.|..+.+..+++.+-..++..+.+.++++. .+.| + ..++...+..+|..+...|++++|..+|.++
T Consensus 1156 yL~mArk~~~e~~Idt~LafaYAKl~rlee-le~f---I-~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1156 YLQMARKKARESYVETELIFALAKTNRLAE-LEEF---I-NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred HHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHH---H-hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 999888887665555567888888887774 3333 2 2456667788999999999999999999985
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc-----------------------hHHHHHHHHHHHHHcCCchhH
Q 015351 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR-----------------------AEDLYRKFVAFEKQYGDREGI 317 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------------~~~~~~~~~~~~~~~g~~~~~ 317 (408)
..|..++.++.+.|+++.|.+.++++....+-.. .++.+..++.++...|.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~---- 1295 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY---- 1295 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC----
Confidence 3688999999999999999999999844211000 01122233334444444
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhh
Q 015351 318 EDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESV--GNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEEL 395 (408)
Q Consensus 318 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~ 395 (408)
+++|+.++++++.++|.+...|..++.++.+. ++.-++.+.|...+...|--. +..-..+|..+..+| .
T Consensus 1296 ----feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r----~~e~~~lW~elv~LY-~ 1366 (1630)
T 1xi4_A 1296 ----FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR----AAEQAHLWAELVFLY-D 1366 (1630)
T ss_pred ----HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH----HHHHHHHHHHHHHHH-H
Confidence 66788888888888888888888888777654 456677777776665443110 011123566666666 4
Q ss_pred hcCChhHHhh
Q 015351 396 DAGDMERTRD 405 (408)
Q Consensus 396 ~~g~~~~A~~ 405 (408)
+.|++++|..
T Consensus 1367 ~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1367 KYEEYDNAII 1376 (1630)
T ss_pred hcccHHHHHH
Confidence 7789998874
No 93
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=3.1e-17 Score=149.48 Aligned_cols=270 Identities=13% Similarity=0.031 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HH
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ-----LWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQ 193 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~ 193 (408)
.++...+.++...|++++|...+++++...|.... ++..++.++...|++++|...+++++...|. ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45677788899999999999999999999876532 5778899999999999999999999987553 23
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCC--------C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc--HHHH
Q 015351 194 GWLSYIKFELRYNEVERARQIYERFVQCHP--------K-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADD--EEAE 262 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~ 262 (408)
.+..++.++...|++++|+..|++++...+ . ...+..++.++...|++++|...+++++...+.. +...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 456788999999999999999999998642 1 2356778999999999999999999999987752 1235
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCC
Q 015351 263 QLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYR-----KFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 337 (408)
..+..++.++...|++++|...+++++...+.......+. ..+.++...|+ +++|...+++++...|
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD--------KAAAANWLRHTAKPEF 246 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHhCCCCCC
Confidence 6788999999999999999999999987633211111222 23345667888 6679999999988776
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhc
Q 015351 338 MN----YDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 338 ~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
.+ ...+..++.++...|++++|...+++++...+..+.. .....++...+..+ ...|++++|+..|
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~---~~~~~~~~~la~~~-~~~g~~~~A~~~l 316 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM---SDLNRNLLLLNQLY-WQAGRKSDAQRVL 316 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHH-HHHTCHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcch---hhHHHHHHHHHHHH-HHhCCHHHHHHHH
Confidence 53 3357889999999999999999999998865443211 11223555667777 3789999998875
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=7.5e-19 Score=153.17 Aligned_cols=218 Identities=12% Similarity=0.103 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCChHHHHHHHHHHHhccCH
Q 015351 71 DYRLRKRKEFEDLIRRV-RWNTGVWIKYAKWEESQKDFNRARSVWERALEV--------DYRNHTLWLKYAEVEMKNKFI 141 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~ 141 (408)
..+++|+..+++.+..+ |....+|..+|.++...|++++|+..|++++.. +|....++..+|.++...|++
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH
Confidence 44455666666665444 677889999999999999999999999999976 366678999999999999999
Q ss_pred HHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHH
Q 015351 142 NHARNVWDRAVTL--------LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW--------MPD-QQGWLSYIKFELR 204 (408)
Q Consensus 142 ~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~-~~~~~~~~~~~~~ 204 (408)
++|+..|++++.. .|....++..+|.++...|++++|...|+++++. .|. ..++..++.++..
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998 4667789999999999999999999999999998 555 7889999999999
Q ss_pred hhhHHHHHHHHHHHHHhCC----------ChHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHcCCcHHHHHHHHHH
Q 015351 205 YNEVERARQIYERFVQCHP----------KVSTWIKYAKFEMKMGEVDR------ARNVYERAVEKLADDEEAEQLFVAF 268 (408)
Q Consensus 205 ~~~~~~A~~~~~~al~~~p----------~~~~~~~~a~~~~~~~~~~~------A~~~~~~al~~~p~~~~~~~~~~~~ 268 (408)
.|++++|+.+|+++++..+ ....|...+......+.... +...++... +..+....++..+
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 258 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSL 258 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHH
Confidence 9999999999999998632 23567777766665444333 222232221 2234478899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhh
Q 015351 269 AEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 269 ~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
|.++...|++++|..+|+++++.
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999874
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=6.5e-19 Score=153.58 Aligned_cols=208 Identities=14% Similarity=0.117 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWM--------PD-QQGWLSYIKFELRYNEVERARQIYERFVQCH-------- 222 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------- 222 (408)
.+|..+|.++...|++++|+..|+++++.. |. ..++..+|.++...|++++|+.+|++++...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344444444444444444444444444331 11 3344444555555555555555555554441
Q ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q 015351 223 P-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKL-----ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK-- 294 (408)
Q Consensus 223 p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 294 (408)
| ...++..+|.++...|++++|...|+++++.. ++++....++..+|.++...|++++|...|+++++..+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 13456677777777777777777777777661 223336677777888888888888888888887765211
Q ss_pred -----cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 015351 295 -----GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIAN 369 (408)
Q Consensus 295 -----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 369 (408)
.....+|..........+....... +..+...++......|..+.++..+|.++...|++++|..+|+++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAP--YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113355555555554333221111 333444555544455667788999999999999999999999999975
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=7.2e-19 Score=142.48 Aligned_cols=167 Identities=10% Similarity=-0.028 Sum_probs=136.8
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 166 (408)
+|.....++..|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++...| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 5666777889999999999999999999999999999999999999999999999999999999999999 777666555
Q ss_pred HHHH-HcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCH
Q 015351 167 HMEE-MLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEV 241 (408)
Q Consensus 167 ~~~~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~a~~~~~~~~~ 241 (408)
.+.. ..+....|+..|+++++.+|+ ..++..++.++...|++++|+..|+++++..|+ ..++..++.++...|+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 4432 223444578888888888888 888888888888888888888888888888874 45788888888888888
Q ss_pred HHHHHHHHHHHHH
Q 015351 242 DRARNVYERAVEK 254 (408)
Q Consensus 242 ~~A~~~~~~al~~ 254 (408)
++|...|++++..
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 8888888887754
No 97
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=2e-16 Score=138.83 Aligned_cols=225 Identities=7% Similarity=-0.026 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC----------HHHHHHHHHHHHhccCCChHHHHHHHHHHHhccC--H
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKD----------FNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF--I 141 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~ 141 (408)
++|...++.+|..+|.+..+|...+.+....|. +++++.+++.++..+|.+..+|...+.+....|. +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 469999999999999999999999999988766 6899999999999999999999999999999984 8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh--------------
Q 015351 142 NHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN-VAGARQIFERWMHWMPD-QQGWLSYIKFELRY-------------- 205 (408)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~-------------- 205 (408)
++++.++.+++..+|.+..+|...+.+....|. ++++++.+.++++.+|. ..+|...+.++...
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~ 206 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 206 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence 999999999999999999999999999999998 59999999999999999 99999999888776
Q ss_pred hhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q 015351 206 NEVERARQIYERFVQCHP-KVSTWIKYAKFEMKM-----------GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEE 273 (408)
Q Consensus 206 ~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 273 (408)
+.+++++.++.+++..+| +..+|.-+..++... +.++++++.+.++++..|+ +.-.+..++.+..
T Consensus 207 ~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd---~~w~l~~~~~~~~ 283 (331)
T 3dss_A 207 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE---NKWCLLTIILLMR 283 (331)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc---cchHHHHHHHHHH
Confidence 678999999999999999 477887665555443 3578999999999999998 4333333333322
Q ss_pred ---HcCChHHHHHHHHHHHhhCCCcchHHHHHH
Q 015351 274 ---RCKETERARCIYKFALDHIPKGRAEDLYRK 303 (408)
Q Consensus 274 ---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 303 (408)
..|..+++...+.+.++.+|.. ..-|..
T Consensus 284 ~~~~~~~~~~~~~~l~~l~~~Dp~r--~~~y~d 314 (331)
T 3dss_A 284 ALDPLLYEKETLQYFSTLKAVDPMR--AAYLDD 314 (331)
T ss_dssp HHCTTTTHHHHHHHHHHHHHHCGGG--HHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHhCcch--hhHHHH
Confidence 3577889999999999999986 344443
No 98
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=5.4e-17 Score=148.20 Aligned_cols=232 Identities=11% Similarity=0.037 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccC------CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------ch
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDY------RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR-------VD 159 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~ 159 (408)
.++..|..+...|++++|+..|++++...+ ....++..+|.++...|+++.|+..+++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999997633 34578999999999999999999999999987543 24
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hCCC-hH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMP---D----QQGWLSYIKFELRYNEVERARQIYERFVQ-----CHPK-VS 226 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~-~~ 226 (408)
.++..+|.++...|++++|...|+++++..+ + ..++..+|.++...|++++|+..|++++. ..|. ..
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 5788999999999999999999999998643 2 56788999999999999999999999999 5553 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCcchHHHH
Q 015351 227 TWIKYAKFEMKMGEVDRARNVYERAVEKLAD--DEEAEQLFVAFAEFEERCKE---TERARCIYKFALDHIPKGRAEDLY 301 (408)
Q Consensus 227 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~ 301 (408)
++..+|.++...|++++|...++++++..+. ++.....+..++.++...++ +.+|+..+++.- .......++
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHH
Confidence 7899999999999999999999999998543 12244456777788888888 788888887621 112235677
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhh
Q 015351 302 RKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRK 335 (408)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 335 (408)
..++.++...|+ +++|...|++++..
T Consensus 340 ~~la~~y~~~g~--------~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCH--------FEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--------HHHHHHHHHHHHHH
Confidence 889999999999 66688888888764
No 99
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=5e-16 Score=136.23 Aligned_cols=191 Identities=9% Similarity=0.045 Sum_probs=158.7
Q ss_pred HHccCHH-HHHHHHHHHHhccCCChHHHHHHHHHHHhccC----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 102 ESQKDFN-RARSVWERALEVDYRNHTLWLKYAEVEMKNKF----------INHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 102 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
...|+++ +|+.++++++..+|.+..+|...+.+....+. +++++.++..++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456665 79999999999999999999999998887765 689999999999999999999999999999
Q ss_pred HcCC--hHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHc-------
Q 015351 171 MLGN--VAGARQIFERWMHWMPD-QQGWLSYIKFELRYNE-VERARQIYERFVQCHP-KVSTWIKYAKFEMKM------- 238 (408)
Q Consensus 171 ~~~~--~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~------- 238 (408)
..+. +++++.++.++++.+|. ..+|...+.+....|. +++++.++.++++.+| +..+|...+.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 9884 89999999999999998 8999999988888888 6899999999999998 578899888888766
Q ss_pred -------CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCc
Q 015351 239 -------GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC-----------KETERARCIYKFALDHIPKG 295 (408)
Q Consensus 239 -------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~p~~ 295 (408)
+.++++++.+.+++..+|+ +..+|+.+..++... +.++++++.+.++++..|++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~---d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 4577888888888888888 677886555444433 23456666666666666655
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=4.5e-18 Score=129.35 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=109.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHH
Q 015351 82 DLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQL 161 (408)
Q Consensus 82 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (408)
++...+|+....|...|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34557898899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHH
Q 015351 162 WYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKF 201 (408)
Q Consensus 162 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 201 (408)
|..+|.++...|++++|+..|+++++++|+ ..++..++.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998 7777777665
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=3e-17 Score=143.81 Aligned_cols=167 Identities=11% Similarity=-0.024 Sum_probs=114.0
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 166 (408)
-|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|+....+...+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 36666777777777777777777777777777777777777777777777777777777777777777776555555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCHH
Q 015351 167 HMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKYAKFEMKMGEVD 242 (408)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~a~~~~~~~~~~ 242 (408)
..+...++.+.|+..|++++..+|+ ..++..++.++...|++++|+..|+++++.+|+ ..++..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 5555666666666677777776666 666666666666666677777777766666663 345666666666666666
Q ss_pred HHHHHHHHHHH
Q 015351 243 RARNVYERAVE 253 (408)
Q Consensus 243 ~A~~~~~~al~ 253 (408)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 66666666654
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=1.6e-16 Score=139.90 Aligned_cols=230 Identities=7% Similarity=-0.014 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc-c-CHHHHHHHHHH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQK-DFNRARSVWERALEVDYRNHTLWLKYAEVEMKN-K-FINHARNVWDR 150 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~ 150 (408)
++|+..++++|..+|.+..+|...+.+....| .+++++..+++++..+|++..+|...+.+.... + ++++++.++.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45999999999999999999999999999999 599999999999999999999999999999887 7 89999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhh-------HHHHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVA--------GARQIFERWMHWMPD-QQGWLSYIKFELRYNE-------VERARQI 214 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~-------~~~A~~~ 214 (408)
++..+|.+..+|...+.+....|.++ ++++.++++++.+|. ..+|...+.++...+. +++++.+
T Consensus 151 ~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 151 SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 99999999999999999998888887 999999999999998 9999999999888775 7999999
Q ss_pred HHHHHHhCC-ChHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHcC---CcHHHHHHHHHHHH
Q 015351 215 YERFVQCHP-KVSTWIKYAKFEMKMGEV--------------------DRARNVYERAVEKLA---DDEEAEQLFVAFAE 270 (408)
Q Consensus 215 ~~~al~~~p-~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~al~~~p---~~~~~~~~~~~~~~ 270 (408)
+++++..+| +..+|..+..++...|+. ....++....+...+ ....++.++..+++
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 999999999 577898888888877754 223333333322220 00126788999999
Q ss_pred HHHHcCChHHHHHHHHHHH-hhCCCcchHHHHHHHH
Q 015351 271 FEERCKETERARCIYKFAL-DHIPKGRAEDLYRKFV 305 (408)
Q Consensus 271 ~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~ 305 (408)
++...|+.++|.++++... +.+|-. ...|.-.+
T Consensus 311 ~~~~~~~~~~a~~~~~~l~~~~dpir--~~yw~~~~ 344 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEKLSSEYDQMR--AGYWEFRR 344 (349)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGG--HHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHhhhChHH--HHHHHHHH
Confidence 9999999999999999987 456665 45665443
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=3.6e-18 Score=133.76 Aligned_cols=118 Identities=13% Similarity=0.032 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL 155 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 155 (408)
+-..|++++..+|+++.+|+.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 44566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 015351 156 PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQ 193 (408)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 193 (408)
|+++.+|+.+|.++...|++++|+..|+++++..|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999998844
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=6.7e-17 Score=141.60 Aligned_cols=171 Identities=14% Similarity=-0.006 Sum_probs=155.6
Q ss_pred hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 015351 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLS 197 (408)
Q Consensus 119 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 197 (408)
...|.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|+ ...+..
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 3348999999999999999999999999999999999999999999999999999999999999999999998 444445
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Q 015351 198 YIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCK 276 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 276 (408)
.+..+...+..+.|+..|++++...| +..+++.+|.++...|++++|+..|+++++..|+.. ...++..++.++...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~-~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA-DGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG-GGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-cchHHHHHHHHHHHcC
Confidence 55667778888999999999999999 478999999999999999999999999999999821 2789999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 015351 277 ETERARCIYKFALD 290 (408)
Q Consensus 277 ~~~~A~~~~~~al~ 290 (408)
+.++|...|++++.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999999886
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.75 E-value=1e-17 Score=135.66 Aligned_cols=169 Identities=11% Similarity=-0.005 Sum_probs=143.8
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 200 (408)
+|.....++..|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++...|++..+...+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~ 81 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK 81 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHH
Confidence 45666778999999999999999999999999999999999999999999999999999999999999885444444443
Q ss_pred HHH-HhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCh
Q 015351 201 FEL-RYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKET 278 (408)
Q Consensus 201 ~~~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 278 (408)
+.. ..+....|+..|+++++.+|+ ..++..+|.++...|++++|...|+++++..|+.. .+.++..++.++...|+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ-DGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT-TTHHHHHHHHHHHHHCSS
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC-hHHHHHHHHHHHHHhCCC
Confidence 322 223344589999999999994 78999999999999999999999999999998621 356899999999999999
Q ss_pred HHHHHHHHHHHh
Q 015351 279 ERARCIYKFALD 290 (408)
Q Consensus 279 ~~A~~~~~~al~ 290 (408)
++|...|++++.
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999999886
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=2.8e-16 Score=132.54 Aligned_cols=191 Identities=16% Similarity=0.072 Sum_probs=136.3
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh----HHHH
Q 015351 158 VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV----STWI 229 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~ 229 (408)
++..++..|..+...|++++|+..|+++++..|. ..++..+|.++...|++++|+..|+++++..|+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3567788888888888888888888888888776 4678888888888888888888888888888742 3577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchH-----------
Q 015351 230 KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAE----------- 298 (408)
Q Consensus 230 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~----------- 298 (408)
.+|.++...|.. ....+..++..+...|++++|+..|+++++..|++...
T Consensus 83 ~~g~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-------------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-------------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 777777653310 01112223333344556666666666666666655321
Q ss_pred ----HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 015351 299 ----DLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNY---DIWFDYIRLEESVGNKERAREVYERAIANVP 371 (408)
Q Consensus 299 ----~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 371 (408)
......+.++...|+ +.+|+..|++++...|+++ .++..+|.++.+.|++++|+..++++....|
T Consensus 144 ~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGA--------WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112345667777888 6679999999999999986 6799999999999999999999999999888
Q ss_pred Cchh
Q 015351 372 PAEE 375 (408)
Q Consensus 372 ~~~~ 375 (408)
++.+
T Consensus 216 ~~~~ 219 (225)
T 2yhc_A 216 NTLE 219 (225)
T ss_dssp CCCC
T ss_pred Cchh
Confidence 8754
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.75 E-value=4.7e-17 Score=156.78 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+..++|+..|+++++.+|.+..+|..+|.++...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCCC-h
Q 015351 151 AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRY---NEVERARQIYERFVQCHPK-V 225 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~-~ 225 (408)
+++.+|++..+|..+|.++...|++++|+..|+++++..|+ ..++..++.++... |++++|...|+++++..|+ .
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999998 89999999999999 9999999999999999985 3
Q ss_pred HHHHHHH
Q 015351 226 STWIKYA 232 (408)
Q Consensus 226 ~~~~~~a 232 (408)
..+..++
T Consensus 163 ~~~~~l~ 169 (568)
T 2vsy_A 163 EPFAFLS 169 (568)
T ss_dssp CHHHHTT
T ss_pred ChHHHhC
Confidence 4444444
No 108
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.5e-18 Score=154.77 Aligned_cols=259 Identities=7% Similarity=0.004 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHH
Q 015351 70 ADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWD 149 (408)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (408)
.+....|+..|.++ .++..|...+..+...|++++|+.+++.+.+..|+ +.+...++.++.+.|++.++.++++
T Consensus 45 ~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~ 118 (449)
T 1b89_A 45 KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN 118 (449)
T ss_dssp ----------------------------------------------------------------------CHHHHTTTTT
T ss_pred cCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc
Confidence 45567899999764 46678999999999999999999999999986444 7788899999999999999998885
Q ss_pred HHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHH
Q 015351 150 RAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWI 229 (408)
Q Consensus 150 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 229 (408)
. |+ ...|..+|..+...|.+++|..+|.++ +.|..++.++.+.|++++|+..|+++ .++.+|.
T Consensus 119 ~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk 181 (449)
T 1b89_A 119 G-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWK 181 (449)
T ss_dssp C-----C-----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHH
T ss_pred C-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHH
Confidence 2 54 469999999999999999999999977 57999999999999999999999999 3789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH
Q 015351 230 KYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEK 309 (408)
Q Consensus 230 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 309 (408)
..+..+...|+++.|..+... +..+|+ -...++.+|.+.|.+++|+.++++++...+.. ..+|..++.++.
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~-L~~~ad------~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah--~~~ftel~il~~ 252 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLH-IVVHAD------ELEELINYYQDRGYFEELITMLEAALGLERAH--MGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTT-TTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHH-HHhCHh------hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--HHHHHHHHHHHH
Confidence 999999999999999777765 334443 24468889999999999999999999988776 789999988887
Q ss_pred HcCCchhHHHHHHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015351 310 QYGDREGIEDAIVGKRRFQYEDEVRKNP-----MNYDIWFDYIRLEESVGNKERAREVYERA 366 (408)
Q Consensus 310 ~~g~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 366 (408)
+..- +. +.+..+.|...+.+.| .+..+|..+..+|...++++.|...+-..
T Consensus 253 ky~p-~k-----~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 253 KFKP-QK-----MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TTCH-HH-----HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hcCH-HH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 6642 22 4557778877777777 78899999999999999999998865543
No 109
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=2.3e-15 Score=132.62 Aligned_cols=237 Identities=8% Similarity=0.034 Sum_probs=196.3
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-C-ChHHH
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK-FINHARNVWDRAVTLLPRVDQLWYKYIHMEEML-G-NVAGA 178 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~-~~~~A 178 (408)
...+..++|+.++++++..+|.+..+|...+.+....| .+++++..+.+++..+|++..+|...+.++... + +++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 33455578999999999999999999999999999999 599999999999999999999999999999988 7 89999
Q ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCC-------H
Q 015351 179 RQIFERWMHWMPD-QQGWLSYIKFELRYNEVE--------RARQIYERFVQCHP-KVSTWIKYAKFEMKMGE-------V 241 (408)
Q Consensus 179 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~-------~ 241 (408)
+.++.++++.+|. ..+|...+-+....|.++ +++..++++++.+| +..+|...+.++...++ +
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 9999999999998 999999999988888887 99999999999998 57899999999988886 7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH-----------------HHHHHHHHHhhCCC-------cch
Q 015351 242 DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETER-----------------ARCIYKFALDHIPK-------GRA 297 (408)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------------A~~~~~~al~~~p~-------~~~ 297 (408)
+++++.+.+++..+|. +..+|..+..++...|+... --.+-+.+++..+. ...
T Consensus 225 ~eELe~~~~aI~~~P~---n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH---NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 8999999999999999 78999988888887776410 11222223322211 134
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 015351 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV-RKNPMNYDIWFDYIRL 349 (408)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~ 349 (408)
+.++..+++++...|+ .++|.++|+... +.+|-....|...+..
T Consensus 302 ~~al~~l~d~~~~~~~--------~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 302 PLALEYLADSFIEQNR--------VDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 6788888888888887 557999999986 6788888888776654
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=2e-17 Score=129.46 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=109.4
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015351 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM 189 (408)
Q Consensus 110 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 189 (408)
+-..+++++..+|+++.+|+.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChH
Q 015351 190 PD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS 226 (408)
Q Consensus 190 p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 226 (408)
|+ +.+|..+|.++...|++++|+..|+++++..|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99 89999999999999999999999999999998765
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=3.8e-16 Score=138.30 Aligned_cols=200 Identities=11% Similarity=0.049 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.+++|...++++.+..+... +...++++.|...|.++ +.++...|++++|...|.+
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHH
Confidence 334678889998888777531 11158899999998876 5577888999999999999
Q ss_pred HHHhCCCc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015351 151 AVTLLPRV------DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNEVERARQIYER 217 (408)
Q Consensus 151 al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~ 217 (408)
++.+.+.. ..++..+|.++...|++++|+..|++++++.+. ..++..++.++.. |++++|+.+|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 99886432 457888999999999999999999999987532 4678889999988 999999999999
Q ss_pred HHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 015351 218 FVQCHPK-------VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADD---EEAEQLFVAFAEFEERCKETERARCIYKF 287 (408)
Q Consensus 218 al~~~p~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 287 (408)
++...+. ..++..+|.++...|++++|+..|++++...|.. ......+..++.++...|++++|+..|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988652 3578899999999999999999999999986542 12345788889999999999999999999
Q ss_pred HHhhCCCc
Q 015351 288 ALDHIPKG 295 (408)
Q Consensus 288 al~~~p~~ 295 (408)
++ ..|..
T Consensus 221 al-~~p~~ 227 (307)
T 2ifu_A 221 SY-SIPGF 227 (307)
T ss_dssp HT-TSTTS
T ss_pred Hh-CCCCC
Confidence 99 88864
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=9.4e-17 Score=154.69 Aligned_cols=163 Identities=15% Similarity=0.074 Sum_probs=135.5
Q ss_pred ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 104 QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFE 183 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 183 (408)
.|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|++..+|..+|.++...|++++|...|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHcCCc
Q 015351 184 RWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKM---GEVDRARNVYERAVEKLADD 258 (408)
Q Consensus 184 ~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~ 258 (408)
++++.+|+ ..+|..++.++...|++++|+..|+++++..|+ ..++..++.++... |++++|.+.|+++++..|.
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~- 160 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG- 160 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC-
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc-
Confidence 99999999 899999999999999999999999999999984 78899999999999 9999999999999999998
Q ss_pred HHHHHHHHHHH
Q 015351 259 EEAEQLFVAFA 269 (408)
Q Consensus 259 ~~~~~~~~~~~ 269 (408)
....+..++
T Consensus 161 --~~~~~~~l~ 169 (568)
T 2vsy_A 161 --AVEPFAFLS 169 (568)
T ss_dssp --CSCHHHHTT
T ss_pred --ccChHHHhC
Confidence 444454444
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=1.2e-16 Score=121.41 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=93.9
Q ss_pred HHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHH
Q 015351 116 RALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQG 194 (408)
Q Consensus 116 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 194 (408)
++..++|+....+...|..+.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+ ..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 4445778888888888888888888888888888888888888888888888888888888888888888888887 777
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHH
Q 015351 195 WLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKF 234 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~ 234 (408)
|..+|.++...|++++|+..|+++++.+|+ ..++..++.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888888888774 5566666554
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=1.1e-16 Score=125.37 Aligned_cols=115 Identities=9% Similarity=-0.017 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC
Q 015351 77 RKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP 156 (408)
Q Consensus 77 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 156 (408)
-..|++++..+|.+...+..+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+++.+|+.+|.++...|++++|+..|+++++..|+
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999887
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.71 E-value=8.9e-17 Score=125.10 Aligned_cols=119 Identities=8% Similarity=0.007 Sum_probs=108.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 78 KEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 78 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
..|++++..+|.+...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHH
Q 015351 158 VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWL 196 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 196 (408)
++.+|..+|.++...|++++|+..|+++++..|+ +..+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999999999999999999887 44433
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=7.4e-17 Score=140.82 Aligned_cols=191 Identities=10% Similarity=-0.005 Sum_probs=157.7
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
|.+...+..+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCC
Q 015351 168 MEEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGE 240 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~ 240 (408)
++...|++++|+..|+++++..|+ ..+|..+ +. .++...........+ +..+...++.++ .|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~ 150 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-----RI---AKKKRWNSIEERRIHQESELHSYLTRLI--AAE 150 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-----HH---HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-----HH---HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH
Confidence 999999999999999999998875 2222222 11 112222222223333 455666666654 689
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhh
Q 015351 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERC-KETERARCIYKFALDH 291 (408)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~ 291 (408)
+++|++.++++++..|+ +..+...+..++... +.+++|..+|.++.+.
T Consensus 151 ~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEGHED---DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTTTSC---HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhccccc---hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999998 677777777777766 7789999999998764
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=9.4e-16 Score=135.71 Aligned_cols=203 Identities=9% Similarity=0.002 Sum_probs=120.7
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIF 182 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 182 (408)
..|++++|..+++++.+..+.. ++...+++++|...|.++ +.++...|++++|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 4567777777777777665532 111146777777777665 44566777777777777
Q ss_pred HHHHHhCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---C----hHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 183 ERWMHWMPD-------QQGWLSYIKFELRYNEVERARQIYERFVQCHP---K----VSTWIKYAKFEMKMGEVDRARNVY 248 (408)
Q Consensus 183 ~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~a~~~~~~~~~~~A~~~~ 248 (408)
.+++.+.+. ...+..++.++...|++++|+..|+++++..+ + ..++..+|.++.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 777765432 34556666666666666666666666666532 1 2345566666655 6666666666
Q ss_pred HHHHHHcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcch----HHHHHHHHHHHHHcCCchhHHHHH
Q 015351 249 ERAVEKLADD---EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRA----EDLYRKFVAFEKQYGDREGIEDAI 321 (408)
Q Consensus 249 ~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~g~~~~~~~~~ 321 (408)
+++++..+.. .....++..+|.++...|++++|+..|++++...|.... ...+...+.++...|+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-------- 210 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-------- 210 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC--------
Confidence 6666665431 112455666666666666666666666666666555531 1234444444445555
Q ss_pred HHHHHHHHHHHHhhCCC
Q 015351 322 VGKRRFQYEDEVRKNPM 338 (408)
Q Consensus 322 ~~~A~~~~~~al~~~p~ 338 (408)
+++|+..|++++ .+|.
T Consensus 211 ~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHh-CCCC
Confidence 555555555555 5554
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.69 E-value=2.5e-15 Score=115.07 Aligned_cols=133 Identities=19% Similarity=0.378 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM 171 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 171 (408)
.+|..+|..+...|++++|...|++++..+|.+..+|..++.++...|++++|...|++++...|.++.+|..++.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 172 LGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 172 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
.|++++|...++++++..|. ..++..++.++...|++++|...|++++...|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888887776 777777777777778888888888777776653
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.69 E-value=2.4e-16 Score=141.22 Aligned_cols=148 Identities=9% Similarity=0.060 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---------------hHHHHHHHHHHHhc
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN---------------HTLWLKYAEVEMKN 138 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~ 138 (408)
++|+..|++++..+|.+..+|..+|..+...|++++|+..|++++..+|.+ ..+|..+|.++...
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457888888888899999999999999999999999999999999999998 58999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHH-HHHHH
Q 015351 139 KFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERA-RQIYE 216 (408)
Q Consensus 139 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A-~~~~~ 216 (408)
|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|+++++++|+ ..++..++.++...|++++| ...|+
T Consensus 210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 88899999999999998888 55777
Q ss_pred HHHHh
Q 015351 217 RFVQC 221 (408)
Q Consensus 217 ~al~~ 221 (408)
+++..
T Consensus 290 ~~~~~ 294 (336)
T 1p5q_A 290 NMFER 294 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.68 E-value=9.7e-17 Score=136.78 Aligned_cols=184 Identities=8% Similarity=-0.050 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHH-------HHHHHHccCHHHHHHHHHHHHhccCCCh--------------------
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKY-------AKWEESQKDFNRARSVWERALEVDYRNH-------------------- 125 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------- 125 (408)
...|+..|.+++..+|...++|..+ +.++...++..++...+.+.+.+.|...
T Consensus 22 ~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r 101 (282)
T 4f3v_A 22 EARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSP 101 (282)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCH
Confidence 3559999999999999999999999 7888888888999999999998777643
Q ss_pred -HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---HHHHHHHHHH
Q 015351 126 -TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD---QQGWLSYIKF 201 (408)
Q Consensus 126 -~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~ 201 (408)
.+++.++.++...|++++|...|..++...|+.. .++.++.++...+++++|+..|+++.+..+. ..+++.+|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 3445577888888888888888888887777766 7777788888888888888888766654322 3467777777
Q ss_pred HHHhhhHHHHHHHHHHHHHhC--CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 202 ELRYNEVERARQIYERFVQCH--PK--VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 202 ~~~~~~~~~A~~~~~~al~~~--p~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
+...|++++|+..|++++... |. .++++.+|.++..+|+.++|...|++++...|+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 777777777777777776443 32 346677777777777777777777777777665
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=1.1e-14 Score=121.44 Aligned_cols=174 Identities=9% Similarity=-0.058 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc----CHHHHHHHHHH
Q 015351 75 RKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK----FINHARNVWDR 150 (408)
Q Consensus 75 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~ 150 (408)
+|...|+++.+. .++.++..+|.++...+++++|+..|+++++. .++.++..+|.++.. + ++++|+..|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 477888888764 78899999999999999999999999998764 678899999999888 6 89999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHH----hhhHHHHHHHHHHHH
Q 015351 151 AVTLLPRVDQLWYKYIHMEEM----LGNVAGARQIFERWMHWMPD---QQGWLSYIKFELR----YNEVERARQIYERFV 219 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~----~~~~~~A~~~~~~al 219 (408)
++. +.++.++..+|.++.. .+++++|+..|+++++..|. +.++..++.++.. .+++++|+.+|+++.
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 965 4678889999998887 78889999999999888874 7888888888887 678888888888888
Q ss_pred HhCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHHc
Q 015351 220 QCHPKVSTWIKYAKFEMKM-G-----EVDRARNVYERAVEKL 255 (408)
Q Consensus 220 ~~~p~~~~~~~~a~~~~~~-~-----~~~~A~~~~~~al~~~ 255 (408)
+..+++..+..++.+|... | ++++|...|+++.+..
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8744667788888887653 3 7888888888888774
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.66 E-value=2.2e-17 Score=147.94 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=123.8
Q ss_pred HHHHHHHHH----HHHhcCCChHHHHHHHHHHH------------HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh
Q 015351 74 LRKRKEFED----LIRRVRWNTGVWIKYAKWEE------------SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK 137 (408)
Q Consensus 74 ~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 137 (408)
+.|+..++. ++...|.. +|...|.... ..+++++|+..|++++..+|.+..+|..+|.++..
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~ 159 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 557777777 67777765 3333333221 45677888888998888899999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHH
Q 015351 138 NKFINHARNVWDRAVTLLPRV---------------DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKF 201 (408)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 201 (408)
.|++++|+..|++++...|++ ..+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.+
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999999999999987 366666666666666666666666666666665 5666666666
Q ss_pred HHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHH-HHHHHHHHHH
Q 015351 202 ELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRA-RNVYERAVEK 254 (408)
Q Consensus 202 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A-~~~~~~al~~ 254 (408)
+...|++++|+..|+++++.+|+ ..++..++.++...|++++| ...|++++..
T Consensus 240 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 240 HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666653 45566666666666666555 3455555443
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.66 E-value=3.7e-15 Score=120.52 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHH-HHhccCH--HHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEV-EMKNKFI--NHARNV 147 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~ 147 (408)
+.+++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++.+|.++.+|..+|.+ +...|++ ++|+..
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4457799999999999999999999999999999999999999999999999999999999999 8899998 999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 148 WDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 148 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
|++++..+|+++.+|..+|.++...|++++|...|+++++..|+
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999998
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=4.3e-16 Score=132.79 Aligned_cols=200 Identities=9% Similarity=-0.022 Sum_probs=172.5
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHH-------HHHHHhccCHHHHHHHHHHHHHhCCCc-----------------
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKY-------AEVEMKNKFINHARNVWDRAVTLLPRV----------------- 158 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~p~~----------------- 158 (408)
..+++..|+..|.+++..+|...++|..+ +.++...+...+++..+++++.+.|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 47899999999999999999999999999 789999999999999999999977653
Q ss_pred ----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---hHHHHHH
Q 015351 159 ----DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK---VSTWIKY 231 (408)
Q Consensus 159 ----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 231 (408)
..++..++.++...|++++|.+.|+.++...|.....+.++.++.+.+++++|+..|+.+....+. ..+++.+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 356677999999999999999999999888887338888999999999999999999987765321 3579999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHH
Q 015351 232 AKFEMKMGEVDRARNVYERAVEKLADDEE-AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVA 306 (408)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 306 (408)
|.++...|++++|+..|++++... ..+. .+..++.+|.++.+.|+.++|+..|++++...|. ..++..+..
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~---~~~~~aL~~ 249 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE---PKVAAALKD 249 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC---HHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---HHHHHHHhC
Confidence 999999999999999999998533 2122 5679999999999999999999999999999997 455555543
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.65 E-value=1.6e-15 Score=118.70 Aligned_cols=115 Identities=9% Similarity=-0.056 Sum_probs=103.3
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015351 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM 189 (408)
Q Consensus 110 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 189 (408)
+...|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 190 PD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 190 p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
|+ +.+|..+|.++...|++++|+..|+++++..|+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 88 888888999999999999999999999888774
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.5e-15 Score=112.30 Aligned_cols=115 Identities=10% Similarity=-0.031 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
|.+...|...|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhC------CC-HHHHHHHHHHH
Q 015351 168 MEEMLGNVAGARQIFERWMHWM------PD-QQGWLSYIKFE 202 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~------p~-~~~~~~~~~~~ 202 (408)
++...|++++|+..|+++++.+ |. ..++..+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999999998 76 56666655544
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.64 E-value=2.6e-14 Score=113.89 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
+..|..+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCC-HHHHHHH--HHHHHHhhhHHHHHHHHHHHHHh
Q 015351 171 MLGNVAGARQIFERWMHWMPD-QQGWLSY--IKFELRYNEVERARQIYERFVQC 221 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~--~~~~~~~~~~~~A~~~~~~al~~ 221 (408)
..|++++|...|+++++..|. ..++..+ +..+...|++++|+..+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999998 6666444 45577889999999999887654
No 128
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.64 E-value=2.9e-14 Score=109.03 Aligned_cols=132 Identities=18% Similarity=0.361 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELR 204 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 204 (408)
.+|..+|.++...|++++|+..|++++...|.+..+|..++.++...|++++|...|+++++..|. ...|..++.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 356666777777777777777777777777766677777777777777777777777777666665 5566666666666
Q ss_pred hhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 205 YNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 205 ~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
.|++++|+..+++++...| +..++..++.++...|++++|...+++++...|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 6666666666666666655 3455566666666666666666666666655543
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-14 Score=110.71 Aligned_cols=120 Identities=10% Similarity=0.035 Sum_probs=111.7
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 166 (408)
.|.++..|..+|..+...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++...|++..+|..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhh
Q 015351 167 HMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYN 206 (408)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~ 206 (408)
.++...|++++|+..|+++++..|. ..++..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999998 788888888887665
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=3.3e-14 Score=118.48 Aligned_cols=176 Identities=9% Similarity=-0.003 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC----ChHHHHHHHH
Q 015351 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG----NVAGARQIFE 183 (408)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~A~~~~~ 183 (408)
.+|...|+++.+. .++.+++.+|.++...+++++|+..|++++.. .++.++..+|.++.. + ++++|+..|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3577889998875 88999999999999999999999999999886 568999999999988 7 8999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 015351 184 RWMHWMPDQQGWLSYIKFELR----YNEVERARQIYERFVQCHPK---VSTWIKYAKFEMK----MGEVDRARNVYERAV 252 (408)
Q Consensus 184 ~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~---~~~~~~~a~~~~~----~~~~~~A~~~~~~al 252 (408)
++.+. ..+.++..++.++.. .+++++|+.+|+++.+..++ +..+..++.++.. .+++++|...|++++
T Consensus 78 ~A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 78 KAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99764 248889999999987 78999999999999999875 7899999999998 889999999999999
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhhCC
Q 015351 253 EKLADDEEAEQLFVAFAEFEERC-K-----ETERARCIYKFALDHIP 293 (408)
Q Consensus 253 ~~~p~~~~~~~~~~~~~~~~~~~-~-----~~~~A~~~~~~al~~~p 293 (408)
+. |. ++..+..++.++... | ++++|..+|+++++.-.
T Consensus 157 ~~-~~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SR---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SC---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CC---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 44 466889999999864 3 89999999999998643
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.62 E-value=3.5e-15 Score=115.98 Aligned_cols=113 Identities=7% Similarity=-0.055 Sum_probs=97.9
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 112 SVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 112 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 192 -QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 192 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
+.+|..+|.++...|++++|+..|+++++..|+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888888888888889999999999888888763
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.61 E-value=1.2e-14 Score=110.58 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=110.3
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHH
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYK 164 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (408)
..+|.+...|..+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..+++++...|+++.+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34566678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhH
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEV 208 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~ 208 (408)
+|.++...|++++|...|+++++..|+ ..++..++.++...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999887 88888888888777653
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=5.3e-15 Score=129.01 Aligned_cols=196 Identities=10% Similarity=0.033 Sum_probs=98.2
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 015351 122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKF 201 (408)
Q Consensus 122 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (408)
|.+...+..+|..+...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++.+|+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------- 70 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---------- 70 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT----------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------
Confidence 3445555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHcCChH
Q 015351 202 ELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA--EQLFVAFAEFEERCKETE 279 (408)
Q Consensus 202 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~~~ 279 (408)
+..++..+|.++...|++++|...|+++++..|++... ..++..+. ..
T Consensus 71 ----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------~~ 120 (281)
T 2c2l_A 71 ----------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------IA 120 (281)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--------HH
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------HH
Confidence 23344444555555555555555555555444431000 11111110 01
Q ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHH
Q 015351 280 RARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESV-GNKER 358 (408)
Q Consensus 280 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g~~~~ 358 (408)
++...........|.+ ..+...++.+. .|+ .++|+..|+++++.+|.+..+...+..++... +.+++
T Consensus 121 ~~~~~~~~~~~~~~~~--~~i~~~l~~l~--~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 188 (281)
T 2c2l_A 121 KKKRWNSIEERRIHQE--SELHSYLTRLI--AAE--------RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188 (281)
T ss_dssp HHHHHHHHHHTCCCCC--CHHHHHHHHHH--HHH--------HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh--HHHHHHHHHHH--HHH--------HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHH
Confidence 1111111222233333 23333333333 233 44577777777777777766666666666555 56777
Q ss_pred HHHHHHHHHhc
Q 015351 359 AREVYERAIAN 369 (408)
Q Consensus 359 A~~~~~~al~~ 369 (408)
|..+|.++.+.
T Consensus 189 a~~~f~~a~~~ 199 (281)
T 2c2l_A 189 MDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHSSCT
T ss_pred HHHHHHhhhcc
Confidence 77777777653
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=1.3e-13 Score=121.00 Aligned_cols=166 Identities=11% Similarity=-0.056 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------H
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD------QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------Q 192 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~ 192 (408)
..+...+..+...|++++|+..+.+++...|... ..+..+|.++...|++++|+..|+++++..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444444555555555555555555555444322 12334455555555666666666666543321 3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH---hCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---cHHH
Q 015351 193 QGWLSYIKFELRYNEVERARQIYERFVQ---CHPK-----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD---DEEA 261 (408)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 261 (408)
.++..+|.++...|++++|+.+|+++++ ..|+ ..++..+|.++...|++++|...++++++..+. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3555666666666666666666666662 2332 145667777777777777777777777665421 0012
Q ss_pred HHHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 015351 262 EQLFVAFAEFEERCKETERA-RCIYKFALDH 291 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 291 (408)
..++..+|.++...|++++| ...|++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56677777777777777777 6667777653
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=2.1e-14 Score=114.56 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=104.5
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYI 166 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 166 (408)
++.+...|..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++..+|++..+|..+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 015351 167 HMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYI 199 (408)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~ 199 (408)
.++...|++++|+..|++++++.|+ ...|...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999998 66555444
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.60 E-value=1.9e-14 Score=116.28 Aligned_cols=124 Identities=9% Similarity=0.109 Sum_probs=112.4
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH-HHHcCCh--HHH
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM-EEMLGNV--AGA 178 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~--~~A 178 (408)
...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|+++.+|..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999999999 8899998 999
Q ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCh
Q 015351 179 RQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKV 225 (408)
Q Consensus 179 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 225 (408)
+..|+++++..|+ ..+|..++.++...|++++|+..|+++++..|+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999999999998 8899999999999999999999999999998853
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.60 E-value=7e-15 Score=121.27 Aligned_cols=147 Identities=13% Similarity=0.019 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh----------------HHHHHHHHHHHh
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH----------------TLWLKYAEVEMK 137 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~ 137 (408)
++++..++......+.....|..+|..+...|++++|+..|++++...|.++ .+|..+|.++..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 100 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566677899999999999999999999999999999887 899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHH-HHH
Q 015351 138 NKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERAR-QIY 215 (408)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~-~~~ 215 (408)
.|++++|+..+++++..+|++..++..+|.++...|++++|+..|+++++..|+ ..++..++.++...++..++. ..|
T Consensus 101 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 180 (198)
T 2fbn_A 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTF 180 (198)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------
T ss_pred hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 888888898888888877766 444
Q ss_pred HHHHH
Q 015351 216 ERFVQ 220 (408)
Q Consensus 216 ~~al~ 220 (408)
.+.+.
T Consensus 181 ~~~f~ 185 (198)
T 2fbn_A 181 GGMFD 185 (198)
T ss_dssp -----
T ss_pred HHHhc
Confidence 44443
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.59 E-value=1.5e-14 Score=109.90 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch-------HHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD-------QLWY 163 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~ 163 (408)
..++..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.|++. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999999999999988877643 4667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 015351 164 KYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSY 198 (408)
Q Consensus 164 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 198 (408)
.+|.++...|++++|+..|+++++..|+++....+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 77777777888888888888888777775544433
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=5e-14 Score=134.35 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccC----------HHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc--CH
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKD----------FNRARSVWERALEVDYRNHTLWLKYAEVEMKNK--FI 141 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~ 141 (408)
++|...+++++..+|.+..+|...+.+....|+ +++++..++++++.+|++..+|...+.+....| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 559999999999999999999999999999988 999999999999999999999999999999999 67
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh--------------
Q 015351 142 NHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG-NVAGARQIFERWMHWMPD-QQGWLSYIKFELRY-------------- 205 (408)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~-------------- 205 (408)
++++..+.++++.+|.+..+|...+.+....| .++++++.+.++++.+|. ..+|...+.++...
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 99999999999999999999999999999999 899999999999999998 99999999887764
Q ss_pred hhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHH
Q 015351 206 NEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 206 ~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~ 243 (408)
+.++++++++.+++..+| +..+|..++.++...+++++
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 556777777777777776 35667766666666555443
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.59 E-value=5.7e-14 Score=108.16 Aligned_cols=121 Identities=9% Similarity=-0.061 Sum_probs=105.6
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHH
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYK 164 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (408)
..+|.++..|..+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|+++.+|..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHh
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFELRY 205 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~ 205 (408)
+|.++...|++++|+..|+++++..|+ ..++..+..+..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765 44555555544433
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.59 E-value=1.3e-13 Score=103.86 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=105.0
Q ss_pred cCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHH
Q 015351 87 VRWN-TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 87 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 165 (408)
+|.. ...|..+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++...|.++.+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4555 678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhh
Q 015351 166 IHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYN 206 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~ 206 (408)
+.++...|++++|...|+++++..|+ ..++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999888 777888777766543
No 142
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.58 E-value=3.8e-13 Score=116.18 Aligned_cols=248 Identities=8% Similarity=0.004 Sum_probs=179.3
Q ss_pred HHHHHccCHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHH
Q 015351 99 KWEESQKDFNRARSVWERALEVDYRNH-TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAG 177 (408)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 177 (408)
+-.+-.|+|..++.-. -+..|.+. ..-....+.+...|++... ....| ...+...++.+.. ++
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~~~~-~~~a~~~la~~~~--~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ-------DPTSK-LGKVLDLYVQFLD--TK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC-------CSSST-THHHHHHHHHHHT--TT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC-------CCCCH-HHHHHHHHHHHhc--cc---
Confidence 4456678898888743 33444443 3334455677777776632 11112 1234444555442 22
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015351 178 ARQIFERWMHWMP-DQQGWLSYIKFELRYNEVERARQIYERFVQCHP---KVSTWIKYAKFEMKMGEVDRARNVYERAVE 253 (408)
Q Consensus 178 A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 253 (408)
|+..|++.+...+ +...+..+|.++...|++++|++++.+.+...| +.+++...+.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888888887653 366667889999999999999999999998876 367888999999999999999999999988
Q ss_pred HcCC---cHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 015351 254 KLAD---DEEAEQLFVAFAEFEERCK--ETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQ 328 (408)
Q Consensus 254 ~~p~---~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~ 328 (408)
..|+ ..+...+.+.-+.+....| ++.+|..+|+++....|+.....+... ++...|+ +++|...
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~--------~~eAe~~ 233 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN--------IAEAQGI 233 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC--------HHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC--------HHHHHHH
Confidence 8772 0113344444454455545 999999999999888886211222222 6778899 6679999
Q ss_pred HHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 329 YEDEVRK----------NPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 329 ~~~al~~----------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
++.+++. +|++++++.+++.+....|+ +|.++++++.+..|+++-
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 9987776 58899999999999988997 889999999999999994
No 143
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.57 E-value=1.3e-13 Score=114.75 Aligned_cols=144 Identities=10% Similarity=-0.019 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 172 (408)
.+..+|..+...|++++|+..|++++ +| ++.+|..+|.++...|++++|+..|++++..+|++..+|..+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45677888888899999999998885 33 6788888888888889999999999999988888888888888888888
Q ss_pred CChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 173 GNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYER 250 (408)
Q Consensus 173 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~ 250 (408)
|++++|+..|+++++..|. ..+. + ....+...| ...++..+|.++...|++++|...|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~------~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLID------Y------------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEE------C------------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCccHHH------H------------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888888888887775 2000 0 000001111 124455556666666666666666666
Q ss_pred HHHHcCC
Q 015351 251 AVEKLAD 257 (408)
Q Consensus 251 al~~~p~ 257 (408)
+++..|+
T Consensus 147 al~~~p~ 153 (213)
T 1hh8_A 147 ATSMKSE 153 (213)
T ss_dssp HHTTCCS
T ss_pred HHHcCcc
Confidence 6665554
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.56 E-value=8.1e-15 Score=120.89 Aligned_cols=150 Identities=10% Similarity=0.023 Sum_probs=96.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch----------------
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD---------------- 159 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------------- 159 (408)
..+......|+++++.+.++......+.....+..+|..+...|++++|+..|++++...|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344445567777777777776666677778888899999999999999999999999888776
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMK 237 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~ 237 (408)
.+|..+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..|+++++..| +..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 66666666666667776666666666666666 66666666666666666666666666666665 34556666666655
Q ss_pred cCCHHHHH
Q 015351 238 MGEVDRAR 245 (408)
Q Consensus 238 ~~~~~~A~ 245 (408)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55544444
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.6e-14 Score=137.81 Aligned_cols=186 Identities=10% Similarity=0.056 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccC----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--
Q 015351 106 DFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF----------INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG-- 173 (408)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-- 173 (408)
-.++|+..+++++..+|++..+|...+.+....|+ +++++..+++++..+|++..+|...+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34678999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHc------------
Q 015351 174 NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYN-EVERARQIYERFVQCHP-KVSTWIKYAKFEMKM------------ 238 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~------------ 238 (408)
+++++++.+.++++.+|. ..+|...+.+....| .++++++++.++++.+| +..+|...+.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 669999999999999999 999999999999999 89999999999999998 578999999988774
Q ss_pred --CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHhhCCC
Q 015351 239 --GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETER------------ARCIYKFALDHIPK 294 (408)
Q Consensus 239 --~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------A~~~~~~al~~~p~ 294 (408)
+.++++++.+.+++..+|+ +..+|+.++.++...+++++ |+..|.+++...|.
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~---~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS---CSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cHHHHHHHHHHHHHHHhhCCC---CccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 5679999999999999999 78999999999988887655 45557777766654
No 146
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.56 E-value=3.5e-14 Score=106.89 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM 171 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 171 (408)
..|+.+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.++|+++.+|..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35777888888889999999999999999999999999999999999999999999999999999888888888888888
Q ss_pred cCChHHHHHHHHHHHHhCCC
Q 015351 172 LGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 172 ~~~~~~A~~~~~~al~~~p~ 191 (408)
.|++++|+..|+++++.+|.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 88888888888888888775
No 147
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.56 E-value=1.7e-14 Score=134.70 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---------------hHHHHHHHHHHHhc
Q 015351 74 LRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN---------------HTLWLKYAEVEMKN 138 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~ 138 (408)
++|+..|+.++...|.....|..+|..+...|++++|+..|+++++.+|.+ ..+|..+|.++...
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888899999999999999999999999999999999999998 68999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHH-HHH
Q 015351 139 KFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQ-IYE 216 (408)
Q Consensus 139 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~-~~~ 216 (408)
|++++|+..|++++.++|++..+|+.+|.++...|++++|+..|+++++++|+ ..++..++.++...++++++.+ .|+
T Consensus 331 g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 8888999999998888877653 445
Q ss_pred HHHH
Q 015351 217 RFVQ 220 (408)
Q Consensus 217 ~al~ 220 (408)
+++.
T Consensus 411 ~~f~ 414 (457)
T 1kt0_A 411 NMFK 414 (457)
T ss_dssp HC--
T ss_pred HHHh
Confidence 4443
No 148
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.56 E-value=1e-12 Score=113.48 Aligned_cols=181 Identities=10% Similarity=0.044 Sum_probs=152.7
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 110 ARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP--RVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 110 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
|+..+++.+...+.+...+..+|.++...|++++|+..+.+++...| ++.+++...+.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78889998887667777778999999999999999999999999887 8889999999999999999999999999999
Q ss_pred hCC-----CHHHHHHHHHH--HHHhh--hHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--
Q 015351 188 WMP-----DQQGWLSYIKF--ELRYN--EVERARQIYERFVQCHPKV-STWIKYAKFEMKMGEVDRARNVYERAVEKL-- 255 (408)
Q Consensus 188 ~~p-----~~~~~~~~~~~--~~~~~--~~~~A~~~~~~al~~~p~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 255 (408)
.+| +..+...++.. ....| ++.+|..+|+++....|+. .....+. ++.++|++++|.+.++.+++..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence 998 35555555544 44445 8999999999999888862 2222222 8899999999999999877764
Q ss_pred --------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc
Q 015351 256 --------ADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR 296 (408)
Q Consensus 256 --------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 296 (408)
|+ ++.+..+++.+....|+ +|.++++++.+..|++.
T Consensus 244 ~~~k~~~~p~---~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 244 VEQKENAVLY---KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TTTCHHHHSS---HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred ccccccCCCC---CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 66 89999899888888887 89999999999999984
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=2.1e-13 Score=101.62 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
+..|..+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..+++++...|+++.+|..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Q 015351 171 MLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE 202 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 202 (408)
..|++++|...|+++++..|+ ..++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999988 77777776654
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.5e-13 Score=104.15 Aligned_cols=100 Identities=7% Similarity=-0.040 Sum_probs=71.0
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHH
Q 015351 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKF 201 (408)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 201 (408)
.....|...|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345566777777777777777777777777777777777777777777777777777777777777776 6666666666
Q ss_pred HHHhhhHHHHHHHHHHHHHhC
Q 015351 202 ELRYNEVERARQIYERFVQCH 222 (408)
Q Consensus 202 ~~~~~~~~~A~~~~~~al~~~ 222 (408)
+...|++++|+..|+++++..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 666666666666666666666
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.54 E-value=4.2e-13 Score=106.79 Aligned_cols=130 Identities=15% Similarity=0.023 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFEL 203 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 203 (408)
+..|..+|..+...|++++|+..|++++...|++..+|..+|.++...|++++|+..|+++++..|. ..+|..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567777777777788888888888888877777777777777777777777777777777777776 667777777777
Q ss_pred HhhhHHHHHHHHHHHHHhCCC-hHHH--HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 204 RYNEVERARQIYERFVQCHPK-VSTW--IKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 204 ~~~~~~~A~~~~~~al~~~p~-~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
..|++++|+..|+++++..|+ ..++ ...+..+...|++++|...+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 777777777777777777663 3444 33333355666677777666665443
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.54 E-value=1.2e-13 Score=104.86 Aligned_cols=108 Identities=14% Similarity=0.014 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------HHHH
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--------QQGW 195 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~ 195 (408)
...++..+|..+...|++++|+..|+++++++|+++.+|..+|.++...|++++|+..|++++++.|+ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999887764 2356
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHH
Q 015351 196 LSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKY 231 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 231 (408)
..+|.++...|++++|+..|++++...|+++....+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 666777777777777777777777777766554433
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.53 E-value=2.8e-13 Score=102.88 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=91.2
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY 198 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 198 (408)
.+|.++..|..+|..+...|++++|+..|++++...|++..+|..+|.++...|++++|+..++++++..|+ ..+|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 345666777778888888888888888888888888877778888888888888888888888887777777 6677777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCH
Q 015351 199 IKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGEV 241 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~ 241 (408)
+.++...|++++|+..|+++++..| +..++..++.++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777766 355666677776666654
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.53 E-value=1.8e-12 Score=113.68 Aligned_cols=169 Identities=8% Similarity=-0.060 Sum_probs=128.4
Q ss_pred HhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh------HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc
Q 015351 85 RRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH------TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV 158 (408)
Q Consensus 85 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (408)
..+|.....+...+..+...|++++|...++++++..|... ..+..+|.++...|++++|+..|++++...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 69 YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 34556666777778888888888888888888888776544 234556777778888888888888888765432
Q ss_pred ------hHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCC-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 159 ------DQLWYKYIHMEEMLGNVAGARQIFERWM---HWMPD-----QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 159 ------~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
..++..+|.++...|++++|...|++++ +..|+ ..++..+|.++...|++++|+.+|+++++..+.
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4577888888888888888888888888 34444 257788888888888888888888888877542
Q ss_pred -------hHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 015351 225 -------VSTWIKYAKFEMKMGEVDRA-RNVYERAVE 253 (408)
Q Consensus 225 -------~~~~~~~a~~~~~~~~~~~A-~~~~~~al~ 253 (408)
..++..+|.++...|++++| ...|++++.
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45678888888888888888 777887765
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-13 Score=105.26 Aligned_cols=118 Identities=15% Similarity=0.025 Sum_probs=108.4
Q ss_pred hcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHH
Q 015351 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLW 162 (408)
Q Consensus 86 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (408)
.+|.+...|..+|..+...|++++|+..|+++++.+|++ ..+|..+|.++...|++++|+..|++++...|++..+|
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 467788999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 015351 163 YKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFEL 203 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 203 (408)
..+|.++...|++++|...|+++++..|+ ..++..++.+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999998 777777766543
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-13 Score=102.95 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=77.5
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYI 199 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~ 199 (408)
.|.++..|..+|..+...|++++|+..|++++...|++..+|..+|.++...|++++|+..|+++++..|. ..+|..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34555666677777777777777777777777777766666767776666666676666666666666666 56666666
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcC
Q 015351 200 KFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMG 239 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~ 239 (408)
.++...|++++|+..|+++++..|. ..++..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666666666653 445555555555444
No 157
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.52 E-value=6.9e-13 Score=110.40 Aligned_cols=133 Identities=12% Similarity=0.056 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCC
Q 015351 162 WYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGE 240 (408)
Q Consensus 162 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~ 240 (408)
++.+|..+...|++++|+..|++++ .|...+|..+|.++...|++++|+..|++++..+| +..++..+|.++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3444555555555555555555553 33455555555555555555555555655555555 34556666666666666
Q ss_pred HHHHHHHHHHHHHHcCCc-------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc
Q 015351 241 VDRARNVYERAVEKLADD-------------EEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR 296 (408)
Q Consensus 241 ~~~A~~~~~~al~~~p~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 296 (408)
+++|...|+++++..|.+ +....++..+|.++...|++++|...|+++++..|.+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 666666666666654431 12569999999999999999999999999999999763
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.51 E-value=1.1e-13 Score=102.14 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=99.2
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--chHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR--VDQLWYK 164 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 164 (408)
+|++...|..+|.++...|++++|+..|+++++.+|.+..+|..+|.++...|++++|+..|++++...|. +..+|..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHHhCCC
Q 015351 165 YIHMEEML-GNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 165 ~~~~~~~~-~~~~~A~~~~~~al~~~p~ 191 (408)
++.++... |++++|+..+++++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999999999998875
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.51 E-value=2.6e-13 Score=103.19 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=101.7
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc-------hHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV-------DQLW 162 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~ 162 (408)
.+..|..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|++ ..+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999988766 7888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 015351 163 YKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYN 206 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 206 (408)
..+|.++...|++++|...|+++++..|+...+..++.+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998888777777776655443
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.50 E-value=2.7e-13 Score=104.74 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-------ChH-----HHHHHHHHHHhccCHHHHHHHHHHHHHh----
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYR-------NHT-----LWLKYAEVEMKNKFINHARNVWDRAVTL---- 154 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 154 (408)
...|...|..+...|++++|+..|+++++.+|+ +.. +|..+|.++...|++++|+..|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 367888999999999999999999999999999 444 8999999999999999999999999999
Q ss_pred ---CCCchHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 155 ---LPRVDQLW----YKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 155 ---~p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+|++..+| +..|.++...|++++|+..|++++++.|+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999 99999999999999999999999998876
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.50 E-value=4e-13 Score=106.79 Aligned_cols=117 Identities=12% Similarity=0.050 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------cCCChHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEV------------------DYRNHTLWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
+..|...|..+...|++++|+..|.+++.. +|.+..+|..+|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467889999999999999999999999998 77778899999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHHhhh
Q 015351 153 TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-Q-QGWLSYIKFELRYNE 207 (408)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~~~~~~~~~~ 207 (408)
.++|+++.+|+.+|.++...|++++|+..|+++++++|+ . .+...+..+....+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 4 556666665554443
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=2.5e-12 Score=96.69 Aligned_cols=118 Identities=15% Similarity=0.286 Sum_probs=80.1
Q ss_pred cCCC-hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 015351 121 DYRN-HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSY 198 (408)
Q Consensus 121 ~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 198 (408)
+|.. ...|..+|.++...|++++|+..|++++...|++..+|..++.++...|++++|+..|+++++..|. ..+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4444 5667777777777777777777777777777777777777777777777777777777777777666 6666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHc
Q 015351 199 IKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKM 238 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~ 238 (408)
+.++...|++++|...|++++...|+ ..++..++.++...
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 66666666677777777666666663 45555555555443
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.49 E-value=6.8e-13 Score=105.66 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=86.0
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYI 199 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~ 199 (408)
++.+...|..+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34556778888888888888888888888888888888888888888888888888888888888888887 77777788
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHH
Q 015351 200 KFELRYNEVERARQIYERFVQCHPK-VSTWIK 230 (408)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 230 (408)
.++...|++++|+..|+++++..|+ ...|..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 8887788888888888888777764 343433
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.49 E-value=6.8e-13 Score=99.75 Aligned_cols=99 Identities=8% Similarity=-0.021 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 015351 126 TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELR 204 (408)
Q Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 204 (408)
..++.+|..+...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred hhhHHHHHHHHHHHHHhCCC
Q 015351 205 YNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 205 ~~~~~~A~~~~~~al~~~p~ 224 (408)
.|++++|+..|+++++..|+
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999998874
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.49 E-value=1.6e-12 Score=114.12 Aligned_cols=160 Identities=10% Similarity=-0.072 Sum_probs=87.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCchH------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHH
Q 015351 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQ------LWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSY 198 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~ 198 (408)
+..+...|++++|...+++++...+..+. .+..++.++...|++++|+..|+++++..+. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444445555555555555444433322 1112444444445555555555555553222 2245555
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhC---C-C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHH
Q 015351 199 IKFELRYNEVERARQIYERFVQCH---P-K----VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADD---EEAEQLFVA 267 (408)
Q Consensus 199 ~~~~~~~~~~~~A~~~~~~al~~~---p-~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~ 267 (408)
|.++...|++++|+.+|+++++.. | + ..++..+|.++...|++++|...++++++..+.. .....++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 556666666666666666665321 1 1 2356677777777777777777777777654321 113567777
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHHhh
Q 015351 268 FAEFEERCKE-TERARCIYKFALDH 291 (408)
Q Consensus 268 ~~~~~~~~~~-~~~A~~~~~~al~~ 291 (408)
+|.++...|+ +++|...|++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7777777773 47777777777653
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.48 E-value=9.3e-13 Score=101.25 Aligned_cols=106 Identities=10% Similarity=-0.005 Sum_probs=92.3
Q ss_pred hccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 015351 119 EVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLS 197 (408)
Q Consensus 119 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 197 (408)
..+|.++..|..+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 3467788899999999999999999999999999999999999999999999999999999999999999888 888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 198 YIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 198 ~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
+|.++...|++++|+..|+++++..|+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 898888889999999999988887653
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.48 E-value=1.8e-12 Score=98.54 Aligned_cols=108 Identities=12% Similarity=0.004 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNH---TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYKY 165 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~ 165 (408)
..++.+|..+...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3467788999999999999999999999999988 799999999999999999999999999999998 7889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 015351 166 IHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYI 199 (408)
Q Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~ 199 (408)
|.++...|++++|+..|+++++..|+ ..+.....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 99999999999999999999999888 44443333
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.47 E-value=7.5e-14 Score=130.31 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=92.0
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch---------------HHHHHHHH
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD---------------QLWYKYIH 167 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~~~ 167 (408)
..+++++|+..|++++...|.....|..+|..+...|++++|+..|++++..+|.+. .+|..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888899999999999999999999999999999999988873 45555555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHH
Q 015351 168 MEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRA 244 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A 244 (408)
++...|++++|+..|+++++++|+ ..+|+.+|.++...|++++|+..|+++++.+|+ ..++..++.++...++++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554 445555555555555555555555555555442 33444444444444444433
No 169
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=5.1e-12 Score=110.83 Aligned_cols=160 Identities=8% Similarity=-0.057 Sum_probs=125.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChH------HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc------hHHH
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHT------LWLKYAEVEMKNKFINHARNVWDRAVTLLPRV------DQLW 162 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~ 162 (408)
...+..+...|++++|...+++++...|..+. .+..+|.++...|++++|+..|++++...+.. ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33466778889999999999999887776654 22347777888889999999999999865432 2368
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh---C-CC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-------hHH
Q 015351 163 YKYIHMEEMLGNVAGARQIFERWMHW---M-PD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-------VST 227 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~A~~~~~~al~~---~-p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~ 227 (408)
..+|.++...|++++|...|+++++. . .. ..++..+|.++...|++++|+.+++++++..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 88899999999999999999999852 1 12 567888899999999999999999999886531 467
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 015351 228 WIKYAKFEMKMGE-VDRARNVYERAVEK 254 (408)
Q Consensus 228 ~~~~a~~~~~~~~-~~~A~~~~~~al~~ 254 (408)
+..+|.++...|+ +++|...|++++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8889999999994 68999999888764
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.45 E-value=2.8e-14 Score=133.74 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEE 170 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 170 (408)
...|..+|..+...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|++..+|..+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCC-HHHHHHHHHH--HHHhhhHHHHHHHHH
Q 015351 171 MLGNVAGARQIFERWMHWMPD-QQGWLSYIKF--ELRYNEVERARQIYE 216 (408)
Q Consensus 171 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~--~~~~~~~~~A~~~~~ 216 (408)
..|++++|+..|+++++..|+ ..++..++.+ +...|++++|+..++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999988 7778778777 778899999999999
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.45 E-value=2.5e-12 Score=105.93 Aligned_cols=151 Identities=16% Similarity=0.142 Sum_probs=68.0
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHcCChH
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL------LPRVDQLWYKYIHMEEMLGNVA 176 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~ 176 (408)
..|++++|...++.+....+....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555443333322234455555555555555555555555555552 2222344555555555555555
Q ss_pred HHHHHHHHHHHh---CC-C----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---C----hHHHHHHHHHHHHcCCH
Q 015351 177 GARQIFERWMHW---MP-D----QQGWLSYIKFELRYNEVERARQIYERFVQCHP---K----VSTWIKYAKFEMKMGEV 241 (408)
Q Consensus 177 ~A~~~~~~al~~---~p-~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~a~~~~~~~~~ 241 (408)
+|...++++++. .+ + ..++..++.++...|++++|+..+++++...+ + ..++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 555555555544 11 1 22334444444444444444444444443211 1 11233444444444444
Q ss_pred HHHHHHHHHHHH
Q 015351 242 DRARNVYERAVE 253 (408)
Q Consensus 242 ~~A~~~~~~al~ 253 (408)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=1.1e-12 Score=108.08 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHh------ccCCChHHHHHHHHHHHhccCHHH
Q 015351 71 DYRLRKRKEFEDLIRRVR-WNTGVWIKYAKWEESQKDFNRARSVWERALE------VDYRNHTLWLKYAEVEMKNKFINH 143 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~~a~~~~~~~~~~~ 143 (408)
+.++.|+..++.... +| ....++..+|.++...|++++|+..|++++. ..|....++..+|.++...|++++
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 334567775554444 45 6778999999999999999999999999998 555667889999999999999999
Q ss_pred HHHHHHHHHHh---CCC----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHhhhHH
Q 015351 144 ARNVWDRAVTL---LPR----VDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP---D----QQGWLSYIKFELRYNEVE 209 (408)
Q Consensus 144 A~~~~~~al~~---~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~~~~~~~~~~~~ 209 (408)
|+..+++++.. .++ ...++..+|.++...|++++|...+++++...+ + ..++..++.++...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99999999998 443 245688999999999999999999999997532 2 445688899999999999
Q ss_pred HHHHHHHHHHHhC
Q 015351 210 RARQIYERFVQCH 222 (408)
Q Consensus 210 ~A~~~~~~al~~~ 222 (408)
+|+..++++++..
T Consensus 165 ~A~~~~~~al~~~ 177 (203)
T 3gw4_A 165 EAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 173
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.44 E-value=1.2e-12 Score=100.79 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCH----------HHHHHHHHHHHhccCCChHHHHHHHHHHHhcc-
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDF----------NRARSVWERALEVDYRNHTLWLKYAEVEMKNK- 139 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~- 139 (408)
+.++.|+..|+++++.+|+++.+|..+|.++...+++ ++|+..|+++++++|++..+|+.+|.++...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3457899999999999999999999999999998775 59999999999999999999999999998875
Q ss_pred ----------CHHHHHHHHHHHHHhCCCch
Q 015351 140 ----------FINHARNVWDRAVTLLPRVD 159 (408)
Q Consensus 140 ----------~~~~A~~~~~~al~~~p~~~ 159 (408)
++++|+..|++|++++|++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 78888888888888888764
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=7.9e-12 Score=92.87 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFEL 203 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 203 (408)
+..|..+|..+...|++++|+..|++++...|+++.+|..+|.++...|++++|...++++++..|+ ..++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777777777777777777777777777776 667777777777
Q ss_pred HhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHH
Q 015351 204 RYNEVERARQIYERFVQCHPK-VSTWIKYAKF 234 (408)
Q Consensus 204 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~ 234 (408)
..|++++|+..|+++++..|+ ..++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777776663 4455555544
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.43 E-value=1.4e-13 Score=123.31 Aligned_cols=157 Identities=6% Similarity=-0.043 Sum_probs=70.9
Q ss_pred HHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHH
Q 015351 84 IRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWY 163 (408)
Q Consensus 84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (408)
+...|.....|..+|..+...|++++|+..|++++...|.+.. +...|++.++...+. ..+|.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~ 234 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHL 234 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHH
Confidence 3344455678889999999999999999999999999988652 111222222222111 12445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHH-HHcCC
Q 015351 164 KYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFE-MKMGE 240 (408)
Q Consensus 164 ~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~-~~~~~ 240 (408)
.+|.++...|++++|+..|+++++.+|+ ..+|+.++.++...|++++|+..|+++++..|+ ..++..++.+. ...+.
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554 455555555555555555555555555555442 33444444442 23344
Q ss_pred HHHHHHHHHHHHHHcCC
Q 015351 241 VDRARNVYERAVEKLAD 257 (408)
Q Consensus 241 ~~~A~~~~~~al~~~p~ 257 (408)
.+.+...|.+++...|.
T Consensus 315 ~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHhhCCCCC
Confidence 45555555555555444
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=8e-12 Score=115.87 Aligned_cols=201 Identities=10% Similarity=0.104 Sum_probs=165.3
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh-----------------HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDYRNH-----------------TLWLKYAEVEMKNKFINHARNVWDRAVT 153 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~ 153 (408)
|...+.-|+-+...|++++|++.|.++++..|... .+...+|.++...|++++|...+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556678888889999999999999998887653 3578899999999999999999999998
Q ss_pred hCCCch------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 154 LLPRVD------QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 154 ~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
..+... .+...++.++...|+++.|..++++++...+. ..++..++.++...|++++|..++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 765432 24556677777889999999999999875321 67889999999999999999999999987
Q ss_pred hCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---c-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 221 CHP-------KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD---D-EEAEQLFVAFAEFEERCKETERARCIYKFAL 289 (408)
Q Consensus 221 ~~p-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 289 (408)
... ...++...+.++...|++++|..++++++...+. + .....++...+.++...|++++|...|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 642 1457889999999999999999999999876532 1 2235677888899999999999999999998
Q ss_pred hh
Q 015351 290 DH 291 (408)
Q Consensus 290 ~~ 291 (408)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=8.4e-12 Score=97.04 Aligned_cols=116 Identities=11% Similarity=-0.052 Sum_probs=93.5
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV---DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGW 195 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 195 (408)
.+|.+...|..+|..+...|++++|+..|++++...|++ ..+|..+|.++...|++++|+..|+++++..|. ..+|
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456778888888888888899999999999998888887 778888888888888888888888888888887 7778
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Q 015351 196 LSYIKFELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFE 235 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~ 235 (408)
..++.++...|++++|+..|+++++..|+ ..++..++.+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 88888888888888888888888887774 55565555543
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.41 E-value=6.8e-13 Score=99.17 Aligned_cols=92 Identities=9% Similarity=0.043 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHH
Q 015351 72 YRLRKRKEFEDLIRR---VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVW 148 (408)
Q Consensus 72 ~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (408)
.+++|+..|+++++. +|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345677888888877 57777788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCchHHHH
Q 015351 149 DRAVTLLPRVDQLWY 163 (408)
Q Consensus 149 ~~al~~~p~~~~~~~ 163 (408)
++++...|+++.+..
T Consensus 85 ~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 85 LKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHCCCHHHHH
T ss_pred HHHHHhCCCcHHHHH
Confidence 888888777766543
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.41 E-value=4.9e-12 Score=114.44 Aligned_cols=123 Identities=10% Similarity=0.032 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHh----------------ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALE----------------VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 154 (408)
...|..+|..+...|++++|+..|+++++ .+|.+..+|..+|.++...|++++|+..++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 35689999999999999999999999998 77888899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHH
Q 015351 155 LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQ 213 (408)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~ 213 (408)
+|++..+|+.+|.++...|++++|+..|++++++.|+ ..++..++.++...++.+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 8888888888888888777654
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.40 E-value=3.8e-12 Score=96.59 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=82.1
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------HHHH
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--------QQGW 195 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~ 195 (408)
.+..|..+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|...|+++++..|. ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 35667778888888888888888888888888888888888888888888888888888888776543 4556
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015351 196 LSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEM 236 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~ 236 (408)
..++.++...|++++|+..|+++++..|+...+..++.+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 66666666667777777777777666666555555555443
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=4.3e-12 Score=98.02 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------chH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh----
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR-------VDQ-----LWYKYIHMEEMLGNVAGARQIFERWMHW---- 188 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 188 (408)
...+...|..+...|++++|+..|+++++.+|+ +.. +|..+|.++...|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788899999999999999999999999998 333 7777788888888888888777777776
Q ss_pred ---CCC-HHHH----HHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 015351 189 ---MPD-QQGW----LSYIKFELRYNEVERARQIYERFVQCHP 223 (408)
Q Consensus 189 ---~p~-~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~p 223 (408)
+|+ ..+| +..|.++...|++++|+..|+++++..|
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 666 5666 6666666666666666666666666655
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.38 E-value=3.3e-12 Score=94.08 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=85.8
Q ss_pred cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---HHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD---QQGWLS 197 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 197 (408)
+|++..+|..+|.++...|++++|+..|++++...|.+..+|..+|.++...|++++|+..|+++++..|. ..+|..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788888888888888888888888888888888888888888888888888888888888888888775 677777
Q ss_pred HHHHHHHh-hhHHHHHHHHHHHHHhCCC
Q 015351 198 YIKFELRY-NEVERARQIYERFVQCHPK 224 (408)
Q Consensus 198 ~~~~~~~~-~~~~~A~~~~~~al~~~p~ 224 (408)
++.++... |++++|+..+++++...|+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 78888888 8888888888888777664
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.38 E-value=2.8e-12 Score=98.79 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=74.9
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCH----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFI----------NHARNVWDRAVTLLPRVDQLWYKYIHMEEML 172 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 172 (408)
+.+.+++|++.|+++++.+|+++.+|+.+|.++...+++ ++|+..|+++++++|++..+|+.+|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999988765 5899999999999999899999999888877
Q ss_pred C-----------ChHHHHHHHHHHHHhCCC
Q 015351 173 G-----------NVAGARQIFERWMHWMPD 191 (408)
Q Consensus 173 ~-----------~~~~A~~~~~~al~~~p~ 191 (408)
| ++++|+.+|++|++++|+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 5 666777777777777665
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.38 E-value=1.3e-12 Score=97.70 Aligned_cols=89 Identities=15% Similarity=0.071 Sum_probs=80.6
Q ss_pred HccCHHHHHHHHHHHHhc---cCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHH
Q 015351 103 SQKDFNRARSVWERALEV---DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGAR 179 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 179 (408)
..|++++|+..|+++++. +|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 015351 180 QIFERWMHWMPD 191 (408)
Q Consensus 180 ~~~~~al~~~p~ 191 (408)
..|+++++..|+
T Consensus 82 ~~~~~al~~~p~ 93 (117)
T 3k9i_A 82 ELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhCCC
Confidence 999999999888
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.37 E-value=9.4e-13 Score=123.39 Aligned_cols=121 Identities=15% Similarity=-0.019 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
+.+++|+..|+++++.+|.+..+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET 99 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHH--HHHcCChHHHHHHHH-----------HHHHhCCC
Q 015351 151 AVTLLPRVDQLWYKYIHM--EEMLGNVAGARQIFE-----------RWMHWMPD 191 (408)
Q Consensus 151 al~~~p~~~~~~~~~~~~--~~~~~~~~~A~~~~~-----------~al~~~p~ 191 (408)
+++..|++..++..++.+ +...|++++|++.++ +++...|+
T Consensus 100 al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 100 VVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 999999999999999988 888899999999999 77776664
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.36 E-value=1.1e-11 Score=98.39 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTL------------------LPRVDQLWYKYIHMEEMLGNVAGARQIFERWM 186 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 186 (408)
...+...|..+...|++++|+..|.+++.. .|....+|..+|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456788888899999999999999999988 44444555556666666666666666666665
Q ss_pred HhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 187 HWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 187 ~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
+++|+ ..+|..+|.++...|++++|+..|+++++.+|+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 55555 555555555555555555555555555555553
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=6.3e-11 Score=109.83 Aligned_cols=203 Identities=10% Similarity=0.024 Sum_probs=161.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD-----------------QLWYKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
|...+.-|.-+...|++++|++.|.+++...|... .++..+|.+|...|++++|.+.+.++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456677888899999999999999999987643 3578899999999999999999999998
Q ss_pred hCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015351 188 WMPD-------QQGWLSYIKFELRYNEVERARQIYERFVQCHP-------KVSTWIKYAKFEMKMGEVDRARNVYERAVE 253 (408)
Q Consensus 188 ~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 253 (408)
..+. ..+...++.++...|+++.|+.++++++...+ ...++..+|.++...|++++|..++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 7654 23445566677778999999999999987643 146788999999999999999999999987
Q ss_pred HcCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---C--cchHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 015351 254 KLAD---DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP---K--GRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 325 (408)
Q Consensus 254 ~~p~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A 325 (408)
.... .+....++...+.++...|++++|...+++++...+ . .....++...+.++...|+ +..|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------y~~A 235 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD--------YKTA 235 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC--------HHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh--------HHHH
Confidence 6432 344678999999999999999999999999987532 2 2234566777777777788 5557
Q ss_pred HHHHHHHHhh
Q 015351 326 RFQYEDEVRK 335 (408)
Q Consensus 326 ~~~~~~al~~ 335 (408)
...|..++..
T Consensus 236 ~~~~~~a~~~ 245 (434)
T 4b4t_Q 236 FSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.33 E-value=3.1e-11 Score=91.51 Aligned_cols=104 Identities=9% Similarity=-0.014 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHhccCHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNT---GVWIKYAKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAEVEMKNKFINHA 144 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A 144 (408)
+.+++|+..|+++++.+|++. .+|..+|.++...|++++|+..|++++..+|++ +.+++.+|.++...|++++|
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A 95 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEA 95 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHH
Confidence 335679999999999999998 799999999999999999999999999999999 88899999999999999999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 015351 145 RNVWDRAVTLLPRVDQLWYKYIHMEEMLGN 174 (408)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 174 (408)
+..|++++...|+++.+......+....++
T Consensus 96 ~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 96 QQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 999999999999998887766665544443
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=2.1e-11 Score=96.16 Aligned_cols=135 Identities=11% Similarity=0.059 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh------HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc------h
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNH------TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV------D 159 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~ 159 (408)
.++..+|.++...|++++|+..|++++...|... .++..+|.++...|++++|+..+++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566777777777777777777777776544322 355666666666666666666666666553321 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----hHHHHHHHHHH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK----VSTWIKYAKFE 235 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~a~~~ 235 (408)
.++..+|.++...|++++|...++++++..+. ..+ ..++..++.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE------------------------------LKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------------------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------------------------ccchHhHHHHHHHHHHHH
Confidence 34445555555555555555555555443110 001 23455566666
Q ss_pred HHcCCHHHHHHHHHHHHHHcC
Q 015351 236 MKMGEVDRARNVYERAVEKLA 256 (408)
Q Consensus 236 ~~~~~~~~A~~~~~~al~~~p 256 (408)
...|++++|...++++++...
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.30 E-value=6.7e-12 Score=112.31 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 015351 192 QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 271 (408)
...+..+|..+...|++++|+..|++++...|+...+ ...|++.++...+ ...+|+++|.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------~~~~~~~~~~~~l------------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLYGKYQDMALAV------------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH-------TCCHHHHHHHHHH------------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh-------hhcccHHHHHHHH------------HHHHHHHHHHH
Confidence 5567777888888888888888888888887754321 1112222222111 12467888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-
Q 015351 272 EERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLE- 350 (408)
Q Consensus 272 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~- 350 (408)
+...|++++|+..|+++++..|.+ ...|..++.++...|+ +++|+..|++++..+|++..++..++.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~--------~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQ--------MDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTC--------HHHHHHHHHHTTC-----------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 888888888888888888888876 6778888888888888 56688888888888888888888888773
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchh
Q 015351 351 ESVGNKERAREVYERAIANVPPAEE 375 (408)
Q Consensus 351 ~~~g~~~~A~~~~~~al~~~p~~~~ 375 (408)
...+..+.+...|.+++...|.++.
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 4456777888888888888877664
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.29 E-value=3.5e-11 Score=89.36 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Q 015351 76 KRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL 155 (408)
Q Consensus 76 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 155 (408)
|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45555556655666555666666666556666666666666665555555555555555555555555555555555554
Q ss_pred C
Q 015351 156 P 156 (408)
Q Consensus 156 p 156 (408)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.28 E-value=3.7e-11 Score=89.26 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 108 NRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
+.|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC---HHHHHHHHHHHHHhhh
Q 015351 188 WMPD---QQGWLSYIKFELRYNE 207 (408)
Q Consensus 188 ~~p~---~~~~~~~~~~~~~~~~ 207 (408)
..|. ......+...+...+.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 8875 4455555555555444
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=2e-10 Score=90.43 Aligned_cols=134 Identities=10% Similarity=0.049 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---C----h
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNEVERARQIYERFVQCHP---K----V 225 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~----~ 225 (408)
.++..+|.++...|++++|+..++++++..+. ..++..++.++...|++++|+..+++++...+ + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555555555666666666666665554332 23566666777777777777777777766542 1 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 015351 226 STWIKYAKFEMKMGEVDRARNVYERAVEKLA---DDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIP 293 (408)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 293 (408)
.++..+|.++...|++++|...++++++..+ +......++..++.++...|++++|...++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999987643 2233567888999999999999999999999998643
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.23 E-value=2.5e-10 Score=103.22 Aligned_cols=121 Identities=8% Similarity=0.022 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----------------HcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVE----------------KLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
+..+|..+...|++++|+..|+++++ ..|. ...+|.++|.++...|++++|+..++++++.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~---~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV---ALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44445555555555555555555554 3333 6788888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 015351 292 IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERARE 361 (408)
Q Consensus 292 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 361 (408)
.|.+ ...+..++.++...|+ +++|+..|+++++.+|++..++..++.++...++.+++..
T Consensus 303 ~p~~--~~a~~~lg~~~~~~g~--------~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSN--TKALYRRAQGWQGLKE--------YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTC--HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchh--HHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 6788888888888888 5668888888888888888888888888887777666544
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.22 E-value=1.2e-10 Score=82.14 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015351 89 WNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168 (408)
Q Consensus 89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 168 (408)
.+...|..+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|+++.++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHcC
Q 015351 169 EEMLG 173 (408)
Q Consensus 169 ~~~~~ 173 (408)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.7e-11 Score=90.27 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc------hHHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV------DQLWY 163 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 163 (408)
+...|..+|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++..+|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999999998 78888
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 015351 164 KYIHMEEMLGNVAGARQIFE 183 (408)
Q Consensus 164 ~~~~~~~~~~~~~~A~~~~~ 183 (408)
.++.++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665544
No 197
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.20 E-value=4.8e-10 Score=83.42 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=57.0
Q ss_pred hcCCChHHHHHHHHHHHHccCH------HHHHHHHHHHHhccCCC--------hHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 86 RVRWNTGVWIKYAKWEESQKDF------NRARSVWERALEVDYRN--------HTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 86 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
..|++++.|..|+....+.|+. ++.+.+|++|+..-|-. ..+|..+|.+ ...++.++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3567777777777777666666 66666677766554432 2444444444 2334555555555555
Q ss_pred HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 152 VTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+..+.....+|..+|++..++|+..+|+.++.+++...|.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 5544444455555555555555555555555555554444
No 198
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.20 E-value=7.3e-10 Score=82.47 Aligned_cols=119 Identities=17% Similarity=0.222 Sum_probs=91.8
Q ss_pred ccCCChHHHHHHHHHHHhccCH------HHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFI------NHARNVWDRAVTLLPRV--------DQLWYKYIHMEEMLGNVAGARQIFERW 185 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a 185 (408)
..|++++.|..+.....+.|+. +..+++|++|+...|-. ..+|..++.+ ...++.++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5789999999999998888988 88889999999887642 3577788876 4558888899999988
Q ss_pred HHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 015351 186 MHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMG 239 (408)
Q Consensus 186 l~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~ 239 (408)
++.+.. ..+|..+++++.++|+...|++++.+++..+|.+.-.+..+.--.+.|
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcC
Confidence 888666 888899999988899999999999998888876544444433333333
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.13 E-value=3.8e-10 Score=81.38 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=54.4
Q ss_pred hcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 86 RVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 86 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
.+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.+.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 367777788888888888888888888888888888888888888888888888888888888887777553
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.13 E-value=3.9e-10 Score=81.34 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=65.3
Q ss_pred ccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 120 VDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 120 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
.+|+++.+|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 479999999999999999999999999999999999999999999999999999999999999999987654
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.09 E-value=1.4e-09 Score=76.61 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=71.9
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHH
Q 015351 123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKF 201 (408)
Q Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 201 (408)
.+..+|..+|.++...|++++|+..|++++...|+++.+|..+|.++...|++++|+..|+++++.+|+ ..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456788888999999999999999999999999988888999999999999999999999999998888 7888888877
Q ss_pred HHHhh
Q 015351 202 ELRYN 206 (408)
Q Consensus 202 ~~~~~ 206 (408)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76543
No 202
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.07 E-value=7.4e-09 Score=91.02 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=87.3
Q ss_pred HHHHHHhcCCChHHHHHHHH--HHHHcc---CHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc--------CHHHHHH
Q 015351 80 FEDLIRRVRWNTGVWIKYAK--WEESQK---DFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK--------FINHARN 146 (408)
Q Consensus 80 ~~~~l~~~p~~~~~~~~la~--~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~ 146 (408)
.+++....|.+..+|..+.+ .+...+ +..+|+.+|+++++.+|++..+|-.++.++.... .......
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 34555667888887766543 334333 4578899999999999998888877766654211 0111111
Q ss_pred HHHH--HHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 015351 147 VWDR--AVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPK 224 (408)
Q Consensus 147 ~~~~--al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 224 (408)
.++. ++...|.++.++..++..+...|+++.|+..+++++.++|+...|..+|.++.-.|++++|+..|++|+..+|.
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 1111 11334555566666655555556666666666666666655555555566666666666666666666666665
Q ss_pred hHH
Q 015351 225 VST 227 (408)
Q Consensus 225 ~~~ 227 (408)
.+.
T Consensus 343 ~~t 345 (372)
T 3ly7_A 343 ANT 345 (372)
T ss_dssp HHH
T ss_pred cCh
Confidence 443
No 203
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.05 E-value=7.1e-08 Score=90.50 Aligned_cols=178 Identities=10% Similarity=0.090 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHhC--CCchH
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEV-DYRNHTLWLKYAEVEMKNK---------FINHARNVWDRAVTLL--PRVDQ 160 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~al~~~--p~~~~ 160 (408)
.+......+.+.|++++|..+|++..+. -+-+...|..+...+...+ ..+.|..+|+++.... |+ ..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-EA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-HH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-HH
Confidence 4666778889999999999999999864 2335677888877776544 4789999999998763 54 77
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CChHHHHHHHHHHH
Q 015351 161 LWYKYIHMEEMLGNVAGARQIFERWMHW--MPDQQGWLSYIKFELRYNEVERARQIYERFVQCH--PKVSTWIKYAKFEM 236 (408)
Q Consensus 161 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~a~~~~ 236 (408)
.|..++..+.+.|++++|..+|+++.+. .|+...|..++..+.+.|+.++|..+|+++.+.. |+...|..+...+.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999999998874 5778899999999999999999999999998864 78889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q 015351 237 KMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEE 273 (408)
Q Consensus 237 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 273 (408)
+.|+.++|.++|+++.+..-.. +...+..+...+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~~~F~ 221 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQV--SKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHHh
Confidence 9999999999999987764322 3455555555443
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.05 E-value=4.5e-10 Score=80.75 Aligned_cols=89 Identities=18% Similarity=0.090 Sum_probs=66.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChH-HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHT-LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
+..|..+...|++++|+..|+++++.+|.++. +|..+|.++...|++++|+..|++++..+|++..+|.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777888888888888888888888888 88888888888888888888888888888887777633 3
Q ss_pred ChHHHHHHHHHHHHhCCC
Q 015351 174 NVAGARQIFERWMHWMPD 191 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~ 191 (408)
.+.++...|++++..+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 445566666665555443
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.04 E-value=2.7e-08 Score=83.85 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cCC
Q 015351 207 EVERARQIYERFVQCHPK---VSTWIKYAKFEMKM-----GEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEER-CKE 277 (408)
Q Consensus 207 ~~~~A~~~~~~al~~~p~---~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~ 277 (408)
....|...++++++.+|+ ..+|..+|.+|... |+.++|.++|+++++..|+. +...+..+|+++.. .|+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~--~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH--DPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT--CSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHHhcCC
Confidence 356777777888888776 45677777777774 78888888888888887752 37777788887776 477
Q ss_pred hHHHHHHHHHHHhhCCC
Q 015351 278 TERARCIYKFALDHIPK 294 (408)
Q Consensus 278 ~~~A~~~~~~al~~~p~ 294 (408)
++.|...+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888876555
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.02 E-value=1e-07 Score=80.36 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 015351 277 ETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQ-----YGDREGIEDAIVGKRRFQYEDEVRKNPMN-YDIWFDYIRLE 350 (408)
Q Consensus 277 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~ 350 (408)
....|+..++++++.+|.......|..++.++.. .|+ .++|+.+|+++++++|+. ...++.+|.++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd--------~ekA~~~ferAL~LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG--------MEKAHTAFEHLTRYCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC--------HHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC--------HHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 3588999999999999995446789999999988 478 667999999999999975 99999999999
Q ss_pred HH-cCCHHHHHHHHHHHHhcCCCc-hh
Q 015351 351 ES-VGNKERAREVYERAIANVPPA-EE 375 (408)
Q Consensus 351 ~~-~g~~~~A~~~~~~al~~~p~~-~~ 375 (408)
.. .|+++.+...+++|+...|.. |.
T Consensus 250 ~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp TTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 88 499999999999999988875 44
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=3e-10 Score=83.40 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHH
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWL 196 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~ 196 (408)
+...|..+|..+...|++++|+..|++++...|+++.+|..+|.++...|++++|+..|+++++..|+ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888888888888888888888876 34455
Q ss_pred HHHHHHHHhhhHHHHHH
Q 015351 197 SYIKFELRYNEVERARQ 213 (408)
Q Consensus 197 ~~~~~~~~~~~~~~A~~ 213 (408)
.++.++...|+++.|+.
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 55555555555444433
No 208
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.01 E-value=8.9e-08 Score=89.84 Aligned_cols=175 Identities=12% Similarity=0.105 Sum_probs=144.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHh--CCCHH
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGN---------VAGARQIFERWMHW--MPDQQ 193 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~al~~--~p~~~ 193 (408)
++......+.+.|++++|..+|+++.... |+ ...|..+...+...+. .+.|..+|+++... .|+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46667788999999999999999998863 44 6778888777765443 67899999998874 57788
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 015351 194 GWLSYIKFELRYNEVERARQIYERFVQCH--PKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEF 271 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 271 (408)
.|..++..+.+.|+.++|..+|+++.+.. |+...|..+...+.+.|+.++|.++|+++.+..-.. +...|..+...
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--d~~ty~~Li~~ 184 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--EEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Confidence 99999999999999999999999998864 788899999999999999999999999998764332 47889999999
Q ss_pred HHHcCChHHHHHHHHHHHhh--CCCcchHHHHHHHHHH
Q 015351 272 EERCKETERARCIYKFALDH--IPKGRAEDLYRKFVAF 307 (408)
Q Consensus 272 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 307 (408)
+.+.|+.++|..++++.-+. .|+ ...+..+...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps---~~T~~~l~~~ 219 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVS---KSTFDMIEEW 219 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBC---HHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcC---HHHHHHHHHH
Confidence 99999999999999998763 444 3444444433
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.92 E-value=1.9e-08 Score=88.46 Aligned_cols=123 Identities=9% Similarity=-0.022 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc---c-----CHHHHHHHHHH--HHhccCCChHHHHHHHHHHHhccCHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQ---K-----DFNRARSVWER--ALEVDYRNHTLWLKYAEVEMKNKFIN 142 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g-----~~~~A~~~~~~--al~~~p~~~~~~~~~a~~~~~~~~~~ 142 (408)
..+|+.+|+++++.+|++..+|-.++.++... + ........++. ++..+|.++.++..++......|+++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d 294 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence 46799999999999999999998877776432 1 11111122222 23568999999999999999899999
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 015351 143 HARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWL 196 (408)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 196 (408)
+|+..+++|+.++|+ ...|..+|.++...|++++|.+.|++|+.++|....+.
T Consensus 295 ~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 295 ESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 999999999999986 67888999999999999999999999999999954433
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.91 E-value=5.3e-09 Score=74.97 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhh
Q 015351 129 LKYAEVEMKNKFINHARNVWDRAVTLLPRVDQ-LWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYN 206 (408)
Q Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~ 206 (408)
+..|..+...|++++|+..|+++++.+|+++. +|..+|.++...|++++|+..|+++++.+|+ ..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45678888899999999999999999999888 9999999999999999999999999999988 555532 5
Q ss_pred hHHHHHHHHHHHHHhCC
Q 015351 207 EVERARQIYERFVQCHP 223 (408)
Q Consensus 207 ~~~~A~~~~~~al~~~p 223 (408)
.+.++...|+++...+|
T Consensus 76 ~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHhccCc
Confidence 66777777777766655
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=9.4e-08 Score=73.13 Aligned_cols=111 Identities=11% Similarity=-0.054 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHh----ccCHHHHHH
Q 015351 71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMK----NKFINHARN 146 (408)
Q Consensus 71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~ 146 (408)
.+.++|...|+++.+..+ +.+. +|.++...+.+++|+..|+++.+. .++.+++.+|.++.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 445778888888887763 3343 888888878888888888888775 677888888888887 778888888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHHHhC
Q 015351 147 VWDRAVTLLPRVDQLWYKYIHMEEM----LGNVAGARQIFERWMHWM 189 (408)
Q Consensus 147 ~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~ 189 (408)
.|+++.+. .++.++..++.+|.. .+++++|...|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888876 457788888888888 788888888888887753
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.85 E-value=4.2e-08 Score=91.41 Aligned_cols=121 Identities=12% Similarity=0.005 Sum_probs=73.1
Q ss_pred HHHHccCHHHHHHHHHHHHhc-----cCCC---hHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCch---HHHH
Q 015351 100 WEESQKDFNRARSVWERALEV-----DYRN---HTLWLKYAEVEMKNKFINHARNVWDRAVTL-----LPRVD---QLWY 163 (408)
Q Consensus 100 ~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~ 163 (408)
.+..+|++++|+.+|+++++. .|++ ...+..+|.++..+|++++|+.++++++.. .|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777777742 3333 345566677777777777777777777755 23333 3456
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-----CCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 164 KYIHMEEMLGNVAGARQIFERWMHW-----MPD----QQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 164 ~~~~~~~~~~~~~~A~~~~~~al~~-----~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
.+|.+|..+|++++|+.+|++|+.+ .|+ .++...++.++..++.+++|...|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776653 222 33344455555555666666666655544
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.82 E-value=1.4e-07 Score=72.18 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=73.0
Q ss_pred cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHH
Q 015351 105 KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEM----LGNVAGARQ 180 (408)
Q Consensus 105 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~ 180 (408)
+++++|+..|+++.+..+ +.+. +|.++...+.+++|+..|+++... .++.++..+|.+|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 356777777777776543 3333 777777666777777777777765 456777777777776 667777777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHh
Q 015351 181 IFERWMHWMPDQQGWLSYIKFELR----YNEVERARQIYERFVQC 221 (408)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~ 221 (408)
.|+++.+. .++..+..++.++.. .+++++|+.+|+++.+.
T Consensus 83 ~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 77777664 335666666666666 56666666666666655
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.82 E-value=2.7e-08 Score=70.02 Aligned_cols=71 Identities=11% Similarity=-0.033 Sum_probs=42.7
Q ss_pred cCCChHHHHHHHHHHHHccC---HHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 87 VRWNTGVWIKYAKWEESQKD---FNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
+|.++.+|..+|.++...++ .++|..+++++++.+|+++.+++.+|..+...|++++|+..+++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45566666666666544333 456666666666666666666666666666666666666666666666555
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.79 E-value=3.6e-08 Score=69.38 Aligned_cols=75 Identities=8% Similarity=-0.141 Sum_probs=67.6
Q ss_pred cCCChHHHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 015351 121 DYRNHTLWLKYAEVEMKNKF---INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWL 196 (408)
Q Consensus 121 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 196 (408)
+|.++.++..+|.++...++ .++|...++++++.+|+++.++..+|..+...|++++|+..|+++++.+|. ..|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 68999999999998876665 799999999999999999999999999999999999999999999999887 4443
No 216
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.74 E-value=1.9e-07 Score=86.96 Aligned_cols=124 Identities=8% Similarity=-0.016 Sum_probs=98.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhC-----CC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----C-Ch---HHHH
Q 015351 168 MEEMLGNVAGARQIFERWMHWM-----PD----QQGWLSYIKFELRYNEVERARQIYERFVQCH-----P-KV---STWI 229 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-----p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p-~~---~~~~ 229 (408)
-+..+|++++|+..+++++++. |+ ..++..++.++..+|++++|..++++++... | ++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3556888999999999888742 22 5677888888888999999999999888753 2 22 3578
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 230 KYAKFEMKMGEVDRARNVYERAVEK-----LADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 230 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
++|.+|..+|++++|..+|+++++. .|+++....+...++..+...+.+++|...|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998875 3666667777888888888888899999998888663
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=3.7e-07 Score=69.48 Aligned_cols=93 Identities=15% Similarity=0.025 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcc-C-CChHHHHHHHHHHHhccCHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQK---DFNRARSVWERALEVD-Y-RNHTLWLKYAEVEMKNKFINHARNV 147 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (408)
...+++.|++.+..+|.+..+.+.||-++.+.+ ++.+++.+++.+++.+ | ++.+.++.+|..+.+.|++++|+..
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 355888899988888999999999999999987 6779999999999988 7 5688999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHH
Q 015351 148 WDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 148 ~~~al~~~p~~~~~~~~~ 165 (408)
++++++..|++..+....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 999999999987765543
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=2.7e-06 Score=64.72 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=76.6
Q ss_pred cCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhC-C-CchHHHHHHHHHHHHcCChHHHH
Q 015351 105 KDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK---FINHARNVWDRAVTLL-P-RVDQLWYKYIHMEEMLGNVAGAR 179 (408)
Q Consensus 105 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~~~~~~~~~~~~~A~ 179 (408)
+....+++.|.+.+..+|.+.++.+.||.++.+.+ ++++++.+++..+... | +..+.++.+|-.+.+.|++++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34567888888888888899999999999999988 6779999999999988 7 56788999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 015351 180 QIFERWMHWMPD 191 (408)
Q Consensus 180 ~~~~~al~~~p~ 191 (408)
..++++++..|+
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 999999999997
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.35 E-value=5.1e-06 Score=59.80 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHH
Q 015351 90 NTGVWIKYAKWEESQKDFNRARSVWERALEVD-------YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLW 162 (408)
Q Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (408)
++.-.+.+|..+...|++..|+.-|+.|++.. +..+.++..+|.++.+.|+++.|+..+++++...|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556778888888889999998888888753 23467788888888888888888888888888888887776
Q ss_pred HHHH
Q 015351 163 YKYI 166 (408)
Q Consensus 163 ~~~~ 166 (408)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6555
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.22 E-value=4.8e-06 Score=76.28 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=47.4
Q ss_pred ccCHHHHHHHHHHHHh-----ccCCCh---HHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCch---HHHHHHHH
Q 015351 104 QKDFNRARSVWERALE-----VDYRNH---TLWLKYAEVEMKNKFINHARNVWDRAVTL-----LPRVD---QLWYKYIH 167 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~-----~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~~~~ 167 (408)
.|++++|+.+|+++++ ..|+++ ..+..+|.++..+|++++|+.++++++.. .|+++ ..+..+|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666666664 233333 34455566666666666666666666654 12222 34555566
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 015351 168 MEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~al~ 187 (408)
+|..+|++++|+.+|++|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.17 E-value=1.4e-05 Score=73.10 Aligned_cols=88 Identities=8% Similarity=0.035 Sum_probs=74.3
Q ss_pred HhhhHHHHHHHHHHHHHhC-----C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHH
Q 015351 204 RYNEVERARQIYERFVQCH-----P-K---VSTWIKYAKFEMKMGEVDRARNVYERAVEK-----LADDEEAEQLFVAFA 269 (408)
Q Consensus 204 ~~~~~~~A~~~~~~al~~~-----p-~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~ 269 (408)
..|++++|+.+|+++++.. | + ...+.++|.+|..+|++++|..+++++++. .|+++.....+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3577899999999999853 2 2 346788999999999999999999999876 356677888899999
Q ss_pred HHHHHcCChHHHHHHHHHHHhh
Q 015351 270 EFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 270 ~~~~~~~~~~~A~~~~~~al~~ 291 (408)
.++..+|++++|..+|++|+++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.13 E-value=4.5e-05 Score=54.74 Aligned_cols=80 Identities=9% Similarity=-0.018 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhC
Q 015351 262 EQLFVAFAEFEERCKETERARCIYKFALDHI-----PKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKN 336 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 336 (408)
+.-.+.+|..+...|++..|...|++|++.. +......++..++..+.+.|+ +++|+..+++++...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~--------~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD--------LDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcC
Confidence 5567788999999999999999999998853 122357899999999999999 677999999999999
Q ss_pred CCCHHHHHHHHHH
Q 015351 337 PMNYDIWFDYIRL 349 (408)
Q Consensus 337 p~~~~~~~~~~~~ 349 (408)
|++..+..++..+
T Consensus 77 P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 77 PEHQRANGNLKYF 89 (104)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHhhHHHH
Confidence 9999998887744
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.12 E-value=3.4e-05 Score=70.72 Aligned_cols=87 Identities=7% Similarity=-0.072 Sum_probs=54.6
Q ss_pred HHHccCHHHHHHHHHHHHhc-----cCCCh---HHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCch---HHHHH
Q 015351 101 EESQKDFNRARSVWERALEV-----DYRNH---TLWLKYAEVEMKNKFINHARNVWDRAVTL-----LPRVD---QLWYK 164 (408)
Q Consensus 101 ~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~ 164 (408)
+..+|++++|+..++++++. .|+++ .++..+|.++..+|++++|+.++++++.. .|+++ ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34566777777777777743 33333 45566666677777777777777777654 23333 34566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 015351 165 YIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
+|.+|..+|++++|+.+|++|++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66677777777777777766665
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.03 E-value=9.2e-05 Score=67.87 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=73.3
Q ss_pred HHHhhhHHHHHHHHHHHHHhC-----C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----CCcHHHHHHHHH
Q 015351 202 ELRYNEVERARQIYERFVQCH-----P-K---VSTWIKYAKFEMKMGEVDRARNVYERAVEKL-----ADDEEAEQLFVA 267 (408)
Q Consensus 202 ~~~~~~~~~A~~~~~~al~~~-----p-~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~ 267 (408)
+..+|++++|+..++++++.. | + ..++.+++.+|..+|++++|+.++++++... |+++.....+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445788899999999998763 2 2 3467888889999999999999999988753 556667888889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhh
Q 015351 268 FAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 268 ~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
+|.++..+|++++|..+|++|++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998863
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.98 E-value=0.00018 Score=52.62 Aligned_cols=93 Identities=13% Similarity=-0.022 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHH---HHHHHHHHHhcc-C-CChHHHHHHHHHHHhccCHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNR---ARSVWERALEVD-Y-RNHTLWLKYAEVEMKNKFINHARNV 147 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (408)
...++..|.+.+..++.+..+-+.||-.+.+..+... ++.+++..+..+ | ..-+..+.+|..+.+.|+|++|+..
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3457778888888788888888888888888766555 888888888776 5 4567788888888888999999999
Q ss_pred HHHHHHhCCCchHHHHHH
Q 015351 148 WDRAVTLLPRVDQLWYKY 165 (408)
Q Consensus 148 ~~~al~~~p~~~~~~~~~ 165 (408)
++..++..|++..+....
T Consensus 97 ~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHH
Confidence 999999988887765443
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.69 E-value=0.0005 Score=52.59 Aligned_cols=133 Identities=10% Similarity=-0.049 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh---------HHHHHHHHHHHhccCHHHHHHHHHHHHHhC---CCch
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNH---------TLWLKYAEVEMKNKFINHARNVWDRAVTLL---PRVD 159 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~ 159 (408)
.+++.-++.....|.|+.|+-+...++....+++ .+...+|+.+...++|..|...|+++++.. +..+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455566777788888888888888775543333 367788888999999999999999987753 2222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFE 235 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~ 235 (408)
......+ . ...........++.++-+.++.++...|++++|+.+++..-....++++-+.+|.+|
T Consensus 101 s~~~~~~-------~----~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTG-------N----SASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred Ccccccc-------c----cCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 2111010 0 000000111111256667777888888888888877776655555667777777665
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.65 E-value=0.0013 Score=48.04 Aligned_cols=89 Identities=8% Similarity=0.055 Sum_probs=69.8
Q ss_pred HccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHH---HHHHHHHHHHhC-C-CchHHHHHHHHHHHHcCChHH
Q 015351 103 SQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINH---ARNVWDRAVTLL-P-RVDQLWYKYIHMEEMLGNVAG 177 (408)
Q Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~~~~~~~~~~~~~ 177 (408)
....+..++..|.+.+..++.+..+-+.||..+....+... ++.+++..+... | ..-+..+.+|-.+.+.|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34456677778888887778888888999988888776555 888888888776 4 345677778888888888888
Q ss_pred HHHHHHHHHHhCCC
Q 015351 178 ARQIFERWMHWMPD 191 (408)
Q Consensus 178 A~~~~~~al~~~p~ 191 (408)
|+..++.+++..|+
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888888887
No 228
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.53 E-value=0.044 Score=49.01 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----CCcHHHHHHH
Q 015351 197 SYIKFELRYNEVERARQIYERFVQCHPK-------VSTWIKYAKFEMKMGEVDRARNVYERAVEKL----ADDEEAEQLF 265 (408)
Q Consensus 197 ~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~ 265 (408)
.++.++...|++.+|.+.+.+.++.... .+++..-..++...+++.++...+.++.... ++......+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4566666666666666666666654321 2345555666666677777777766665432 2222334455
Q ss_pred HHHHHHHH-HcCChHHHHHHHHHHHhh
Q 015351 266 VAFAEFEE-RCKETERARCIYKFALDH 291 (408)
Q Consensus 266 ~~~~~~~~-~~~~~~~A~~~~~~al~~ 291 (408)
..-|.+++ ..++|..|...|-+++..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 55566666 667777777666666643
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.51 E-value=0.00061 Score=52.14 Aligned_cols=131 Identities=8% Similarity=-0.073 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch---------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HH
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD---------QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQ 193 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~ 193 (408)
+++.-+..+...|.++.|+-+...++....+++ .+...+|+.+...++|..|...|+++++.... ..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566677888999999999888777643222 36788899999999999999999999875322 11
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 015351 194 GWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFE 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 272 (408)
.....+. ..-........++.++.+..+.|+...+++++|+.+++. .|.....+.+-+.+|++|
T Consensus 102 ~~~~~~~-----------~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~----Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN-----------SASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG----IPSRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT----SCGGGCCHHHHHHHHHHC
T ss_pred ccccccc-----------cCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc----CCchhcCHHHHHHHHHHh
Confidence 1000000 000000111222457888999999999999999999776 343333688888888876
No 230
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.031 Score=44.27 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHh---cCCC-hHHHHHHHHHHHHc---cCH--H-HHH-HHHHHHHhc---------cCCChHHHHHHHH
Q 015351 74 LRKRKEFEDLIRR---VRWN-TGVWIKYAKWEESQ---KDF--N-RAR-SVWERALEV---------DYRNHTLWLKYAE 133 (408)
Q Consensus 74 ~~A~~~~~~~l~~---~p~~-~~~~~~la~~~~~~---g~~--~-~A~-~~~~~al~~---------~p~~~~~~~~~a~ 133 (408)
...+..||+.|.. .-++ .+.|..+..+.... |.. . .-. .++++++.. +|....+|+.++.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 3467788887766 2333 46899998887653 332 1 233 688888853 3444578888888
Q ss_pred HHHhccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015351 134 VEMKNKFINHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP 190 (408)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 190 (408)
++ ..++..++..+|.-+.... -.....|..+|.++...|++.+|.++|+.+++..-
T Consensus 89 ~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 89 LF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 75 3445668888888877653 45677888889999999999999999999988653
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.15 E-value=0.01 Score=43.44 Aligned_cols=85 Identities=11% Similarity=-0.010 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 210 RARQIYERFVQCHPKVSTWIKYAKFEMKMGEV---DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286 (408)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 286 (408)
...+-|.+=+.-.|+.++.+.+|..+.+..+. .+++.+++..++..|.. ..+.++.+|..+.+.|++++|+.+.+
T Consensus 25 ~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 25 ILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444443223346788889999888877654 47889999998887743 57788888888999999999999999
Q ss_pred HHHhhCCCcc
Q 015351 287 FALDHIPKGR 296 (408)
Q Consensus 287 ~al~~~p~~~ 296 (408)
..++..|.+.
T Consensus 103 ~lL~~eP~N~ 112 (134)
T 3o48_A 103 TLFEHERNNK 112 (134)
T ss_dssp HHHTTCTTCH
T ss_pred HHHhhCCCCH
Confidence 9999999884
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.10 E-value=0.013 Score=43.44 Aligned_cols=73 Identities=10% Similarity=0.045 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcc
Q 015351 222 HPKVSTWIKYAKFEMKMGEV---DRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGR 296 (408)
Q Consensus 222 ~p~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 296 (408)
.|+.+..+.+|..+....+. .+++.+++..+...|.. ..+..+.+|..+.+.|+|.+|+.+.+..++..|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 46788889999888877754 47888999998887753 567778888888899999999999999999999874
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.06 E-value=0.015 Score=42.58 Aligned_cols=75 Identities=5% Similarity=-0.120 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM-NYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
...-..++..+.+..+... ..+++.+++..+..+|. .-+.++.++..+.+.|+++.|+.+.+..++..|++...
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d-----~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVND-----ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHH-----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhhHHHHHHHHHcCCCHHH-----HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 5666677777777776655 66799999999999885 47889999999999999999999999999999999874
Q ss_pred H
Q 015351 377 R 377 (408)
Q Consensus 377 ~ 377 (408)
.
T Consensus 115 ~ 115 (134)
T 3o48_A 115 G 115 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0098 Score=57.85 Aligned_cols=115 Identities=12% Similarity=0.036 Sum_probs=73.2
Q ss_pred HcCC-hHHHHHHHHHHHHhCCCHHHHHHHH--HHHHHhh-hHHHHHHHHHHHHHh-------CC--C----------hHH
Q 015351 171 MLGN-VAGARQIFERWMHWMPDQQGWLSYI--KFELRYN-EVERARQIYERFVQC-------HP--K----------VST 227 (408)
Q Consensus 171 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~-~~~~A~~~~~~al~~-------~p--~----------~~~ 227 (408)
..++ ++.|+..+++..+..|...+....+ .+....+ +--+|++++.++++. .+ + ..+
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3444 4667777777777777633333222 2222222 233455666555532 11 1 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFA 288 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 288 (408)
...-+.++...|+++-|+++-++++...|. ....|..++.+|...|+++.|+-.++-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs---eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALD---SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCch---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344467777888888888888888888888 6888888888888888888888776654
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0061 Score=59.25 Aligned_cols=113 Identities=9% Similarity=-0.019 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHcc-CHHHHHHHHHHHHhc--------cCCC----------hHHHHHHH
Q 015351 73 RLRKRKEFEDLIRRVRWNTGVW-IKYAKWEESQK-DFNRARSVWERALEV--------DYRN----------HTLWLKYA 132 (408)
Q Consensus 73 ~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g-~~~~A~~~~~~al~~--------~p~~----------~~~~~~~a 132 (408)
.+.|+..|++..+.+|.....+ ..+..+....+ +--+|+.+..+.++. .+.+ ..+...-+
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 3568899999999988664322 22222222222 233566666666531 2222 23555667
Q ss_pred HHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 015351 133 EVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERW 185 (408)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 185 (408)
.++...|+++-|+.+-++|+...|.....|..++.+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 78888999999999999999999999999999999999999999998776544
No 236
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.90 E-value=0.016 Score=57.72 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHHHH-----hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCHHHHHH
Q 015351 125 HTLWLKYAEVEMKNKFINHARNVWDRAVT-----LLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW--MPDQQGWLS 197 (408)
Q Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 197 (408)
...+..+...+++.|+.++|..+|..+-. ..|+ ...|..++..+.+.|+.++|.++|+++.+. .|+...|..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35678888899999999999999977643 2455 778999999999999999999999998774 477888888
Q ss_pred HHHHHHHhhh-HHHHHHHHHHHHHhCC
Q 015351 198 YIKFELRYNE-VERARQIYERFVQCHP 223 (408)
Q Consensus 198 ~~~~~~~~~~-~~~A~~~~~~al~~~p 223 (408)
++..+.+.|. .++|..+|+++.+..-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 8888888887 4788899999988763
No 237
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.11 Score=41.26 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhc---cCCCh-HHHHHHHHHHHhc---cCH--H-HHH-HHHHHHHHhCCC---------chHHHHHHH
Q 015351 107 FNRARSVWERALEV---DYRNH-TLWLKYAEVEMKN---KFI--N-HAR-NVWDRAVTLLPR---------VDQLWYKYI 166 (408)
Q Consensus 107 ~~~A~~~~~~al~~---~p~~~-~~~~~~a~~~~~~---~~~--~-~A~-~~~~~al~~~p~---------~~~~~~~~~ 166 (408)
....+..|++.|.. ..++| ..|..+....... |.. + .-. .+++++++..-+ ...+|..++
T Consensus 8 l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya 87 (202)
T 3esl_A 8 LNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYI 87 (202)
T ss_dssp HHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 34455566666544 33333 5666666543322 221 1 122 456666654322 124455555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 015351 167 HMEEMLGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCH 222 (408)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 222 (408)
.+. ..+....+..+|.-+....=. ...|..++.++...|++.+|..+|+..++..
T Consensus 88 ~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 88 NLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 443 122233455555544443222 4455555555555555555555555555544
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.89 E-value=0.027 Score=41.81 Aligned_cols=74 Identities=5% Similarity=-0.117 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 015351 298 EDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPM-NYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEK 376 (408)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 376 (408)
...-..|+..+....+... ..+++.+++..+...|. .-+..+.++..+.+.|++++|+.+.+..++..|++...
T Consensus 39 ~~t~F~YAw~Lv~S~~~~d-----i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVND-----ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHH-----HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 5666677777777776655 66788999999988885 45678888888999999999999999999999999864
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.059 Score=41.96 Aligned_cols=44 Identities=7% Similarity=0.134 Sum_probs=22.4
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR 150 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (408)
...|+++.|.++.+.. ++...|..+|......|+++-|+.+|++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555555554433 3445555555555555555555555544
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.67 E-value=0.1 Score=51.93 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=46.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN 174 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 174 (408)
...+.++...|.++.|....+ ++..- ..+....|++++|.++.+ ..+++..|..+|+.+...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 455566666676666665442 12111 234456677777766542 22456777777777777777
Q ss_pred hHHHHHHHHHH
Q 015351 175 VAGARQIFERW 185 (408)
Q Consensus 175 ~~~A~~~~~~a 185 (408)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777777764
No 241
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.57 E-value=0.026 Score=56.24 Aligned_cols=100 Identities=5% Similarity=-0.045 Sum_probs=87.5
Q ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CChHHHHH
Q 015351 158 VDQLWYKYIHMEEMLGNVAGARQIFERWMH-----WMPDQQGWLSYIKFELRYNEVERARQIYERFVQCH--PKVSTWIK 230 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 230 (408)
....+..++..+.+.|+.++|..+|....+ ..|+...|..++..+.+.|+.++|.++|+++.+.. |+...|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788999999999999999999977543 46889999999999999999999999999998865 78889999
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHcCC
Q 015351 231 YAKFEMKMGEV-DRARNVYERAVEKLAD 257 (408)
Q Consensus 231 ~a~~~~~~~~~-~~A~~~~~~al~~~p~ 257 (408)
+...+.+.|+. ++|.++|+++.+..-.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 99999999984 7899999999987643
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.084 Score=41.09 Aligned_cols=101 Identities=9% Similarity=0.055 Sum_probs=68.9
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHH
Q 015351 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQ 213 (408)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~ 213 (408)
+..+.|+++.|.++.+.. ++...|..+|......|+++-|..+|+++-. +-.+.-+|...|+.+.-.+
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHH
Confidence 446889999998886654 5678899999999999999999999987622 2334445555677766666
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015351 214 IYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYER 250 (408)
Q Consensus 214 ~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~ 250 (408)
.-+.+...... .....+++..|+++++.++|.+
T Consensus 82 la~iA~~~g~~----n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTREDF----GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTCH----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCccH----HHHHHHHHHcCCHHHHHHHHHH
Confidence 65555544321 2222334567888888888765
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.45 E-value=0.068 Score=53.15 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHH
Q 015351 99 KWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRA 151 (408)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 151 (408)
.+....|+++.|.++.+. .++...|..+|..+.+.++++.|+.+|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 445678999999988643 467899999999999999999999999876
No 244
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.35 E-value=0.012 Score=44.54 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015351 340 YDIWFDYIRLEESVGNKERAREVYERAIA 368 (408)
Q Consensus 340 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 368 (408)
...|..++.++...|++.+|.++|+.+++
T Consensus 101 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 245
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.35 E-value=0.066 Score=40.45 Aligned_cols=108 Identities=16% Similarity=0.240 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcC-CC-hHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcc---------CCChHHHHHHHHHHHhccC
Q 015351 75 RKRKEFEDLIRRVR-WN-TGVWIKYAKWEESQ---KDFNRARSVWERALEVD---------YRNHTLWLKYAEVEMKNKF 140 (408)
Q Consensus 75 ~A~~~~~~~l~~~p-~~-~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~---------p~~~~~~~~~a~~~~~~~~ 140 (408)
.++..||..|.... ++ ...|..+..+.... |. ..-..+++++++.. |....+|+.++.+.
T Consensus 8 ~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----- 81 (152)
T 4a1g_A 8 NVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN----- 81 (152)
T ss_dssp HHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB-----
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc-----
Confidence 35666777665532 22 35788887777653 33 23456667766433 22345666666542
Q ss_pred HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015351 141 INHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM 189 (408)
Q Consensus 141 ~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 189 (408)
.++..+|..+.... -.....|..+|.++...|++.+|.++|+.+++..
T Consensus 82 -~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 82 -SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp -SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 22555665555432 3445666677777777777777777777776654
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.23 E-value=0.62 Score=41.64 Aligned_cols=166 Identities=6% Similarity=-0.054 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChH-----HHHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCchHHH---
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNHT-----LWLKYAEVEMK-NKFINHARNVWDRAVTLLPRVDQLW--- 162 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~--- 162 (408)
.+.+.+|.+|...|+.++...++.......+.-+. +-..+...+.. -+..+.-.++...+++-..+....|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999988888776554433322 22233333332 2445555556666665433322333
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----CCh---
Q 015351 163 ---YKYIHMEEMLGNVAGARQIFERWMHWMPD-------QQGWLSYIKFELRYNEVERARQIYERFVQCH----PKV--- 225 (408)
Q Consensus 163 ---~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~--- 225 (408)
..+|.+|...|++.+|..++.+..+.... .+++..-..++...+++.++...|.++.... +++
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 37899999999999999999988874322 5566666788889999999999998887543 333
Q ss_pred -HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHcCC
Q 015351 226 -STWIKYAKFEM-KMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 226 -~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~ 257 (408)
.+...-|.++. ..++|..|...|-++++.+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 33455577778 899999999999999877654
No 247
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.10 E-value=0.16 Score=41.06 Aligned_cols=112 Identities=16% Similarity=0.270 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHc---cC--HHHHHHHHHHHHhccC---------CChHHHHHHHHHH
Q 015351 73 RLRKRKEFEDLIRR---VRWNTGVWIKYAKWEESQ---KD--FNRARSVWERALEVDY---------RNHTLWLKYAEVE 135 (408)
Q Consensus 73 ~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~---g~--~~~A~~~~~~al~~~p---------~~~~~~~~~a~~~ 135 (408)
....+..|+..|.. ..+-...|..|..+.... |. -..-..++++++.... ....+|+.++.+.
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~ 130 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI 130 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc
Confidence 34567788887764 234467899999887764 32 1234678888885433 3357788777742
Q ss_pred HhccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 015351 136 MKNKFINHARNVWDRAVTLL--PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMP 190 (408)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 190 (408)
+.+..+|..+.... -.....|..+|.++...|++.+|..+|+.+++..-
T Consensus 131 ------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 ------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp ------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred ------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 35556776666543 45667888888888888888888888888887653
No 248
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.03 E-value=0.25 Score=39.88 Aligned_cols=110 Identities=15% Similarity=0.311 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhc--cCCC-hHHHHHHHHHHHhc---cC--HHHHHHHHHHHHHhCCCc---------hHHHHHHHHHH
Q 015351 107 FNRARSVWERALEV--DYRN-HTLWLKYAEVEMKN---KF--INHARNVWDRAVTLLPRV---------DQLWYKYIHME 169 (408)
Q Consensus 107 ~~~A~~~~~~al~~--~p~~-~~~~~~~a~~~~~~---~~--~~~A~~~~~~al~~~p~~---------~~~~~~~~~~~ 169 (408)
....+..|+..|.. ..++ ...|..+....... |. -..-..+++++++...++ ..+|..++.+
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~- 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY- 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc-
Confidence 34556667766643 2233 47888887765543 21 112456777777765443 2456666553
Q ss_pred HHcCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 015351 170 EMLGNVAGARQIFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCH 222 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 222 (408)
.+.+..+|.-+....=. ...|..++.++...|++.+|..+|+..++..
T Consensus 130 -----~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 130 -----IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp -----CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -----cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 13455566655543322 5666666766666777777777777776665
No 249
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.01 E-value=0.1 Score=40.07 Aligned_cols=93 Identities=22% Similarity=0.316 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHc---cCHH-HHHHHHHHHHhccC---------CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Q 015351 91 TGVWIKYAKWEESQ---KDFN-RARSVWERALEVDY---------RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL-- 155 (408)
Q Consensus 91 ~~~~~~la~~~~~~---g~~~-~A~~~~~~al~~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 155 (408)
...|..+..+.... |..+ .-..++++++.... ....+|+.++.+. ++ +..+|..+....
T Consensus 19 L~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG 92 (164)
T 2wvi_A 19 LDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIG 92 (164)
T ss_dssp HHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcc
Confidence 46788887776552 2221 23556777765432 2346666666653 22 445555555432
Q ss_pred CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015351 156 PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM 189 (408)
Q Consensus 156 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 189 (408)
-.....|..+|.++...|++.+|.++|+.+++..
T Consensus 93 ~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 93 VSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3455667777777777777777777777777654
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.72 E-value=0.67 Score=48.11 Aligned_cols=188 Identities=11% Similarity=-0.043 Sum_probs=108.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---------------------
Q 015351 97 YAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLL--------------------- 155 (408)
Q Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------- 155 (408)
+...+...|.++-+.. .+...|.++-.-+.+|.++...|++++|..+|+++-...
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4445555666665544 334456666666778888888888888888887763221
Q ss_pred --CCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHH
Q 015351 156 --PRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVST 227 (408)
Q Consensus 156 --p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 227 (408)
...+..|.....+..+.+.++.+++.-+.|++..+. ..+|..+.......|++++|...+-..-...-....
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 001245666777788888888888888888876543 236777777788888888887776554333223334
Q ss_pred HHHHHHHHHHcC------------CHHHHHHHHHHHHH-H-cCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 015351 228 WIKYAKFEMKMG------------EVDRARNVYERAVE-K-LADDEEAEQLFVAFAEFEERCKETERA-RCIYKFALD 290 (408)
Q Consensus 228 ~~~~a~~~~~~~------------~~~~A~~~~~~al~-~-~p~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~ 290 (408)
...+...+.+.| -.++..+++..-.+ . .+.+ .+..+..+--+.+..|++.+| ..+|+++.+
T Consensus 974 Lr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~--~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVES--QPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCcccc--CCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 444443333333 33444444432211 1 1111 123344444445555665544 566666654
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.65 E-value=0.24 Score=44.49 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015351 162 WYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQ 220 (408)
Q Consensus 162 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 220 (408)
...++..+...|++.+|+..+.+++..+|- ..+|..+..++.+.|+..+|+..|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677777888888777777777777 67777777777777887777777776644
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.55 E-value=0.71 Score=38.46 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=34.9
Q ss_pred HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCc
Q 015351 102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRV 158 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (408)
.+.|+++.|++.....++.+|.+......+.++++-.|+++.|..-++.+.+++|+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345566666666666666666666666666666666666666666666666666553
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.31 E-value=0.26 Score=41.04 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=81.0
Q ss_pred HHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HH---HHHHHHHHHHHhhhHH
Q 015351 134 VEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQ---GWLSYIKFELRYNEVE 209 (408)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~~~~~~~~ 209 (408)
-..+.|+.++|+......++.+|.+......+.+++.-.|++++|..-++.+.+++|. .. .|..++.++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~----- 80 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA----- 80 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH-----
Confidence 3467789999999999999999999999999999999999999999999999999998 22 22222222211
Q ss_pred HHHHHHHHHHHh--CC----ChHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHcCC
Q 015351 210 RARQIYERFVQC--HP----KVSTWIKY---AKFEMKMGEVDRARNVYERAVEKLAD 257 (408)
Q Consensus 210 ~A~~~~~~al~~--~p----~~~~~~~~---a~~~~~~~~~~~A~~~~~~al~~~p~ 257 (408)
=...+.- .| .+..|... +......|+.++|...-.++++.-|.
T Consensus 81 -----R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 81 -----RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -----HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -----HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 1122221 12 23334332 34445678999999999988888665
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.28 E-value=0.88 Score=47.23 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=109.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-----------------------CCChHHHHHHHHHHHhc
Q 015351 82 DLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD-----------------------YRNHTLWLKYAEVEMKN 138 (408)
Q Consensus 82 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------------p~~~~~~~~~a~~~~~~ 138 (408)
..+...|.++..-+.+|.++...|++++|..+|+++-... ..-+..|.....++.+.
T Consensus 833 ~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~ 912 (1139)
T 4fhn_B 833 QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE 912 (1139)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT
T ss_pred HHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc
Confidence 3455667787777889999999999999999999874210 01124567777888899
Q ss_pred cCHHHHHHHHHHHHHhCCC-ch----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhH-----
Q 015351 139 KFINHARNVWDRAVTLLPR-VD----QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEV----- 208 (408)
Q Consensus 139 ~~~~~A~~~~~~al~~~p~-~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----- 208 (408)
|.++.+++.-..|++..+. ++ .+|..+-..+...|++++|-.++...-...-..+....+.......|..
T Consensus 913 ~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 913 SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhC
Confidence 9999999999999987643 22 3788888999999999999877754422211244444444333333332
Q ss_pred -------HHHHHHHHH-HHHh---CCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 015351 209 -------ERARQIYER-FVQC---HPKVSTWIKYAKFEMKMGEV-DRARNVYERAVEK 254 (408)
Q Consensus 209 -------~~A~~~~~~-al~~---~p~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~ 254 (408)
++...++.. |-.. ...+..+..+=.++...|++ ..|.-+|+.+.+.
T Consensus 993 lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 993 YSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 333333321 2111 22234443333444455555 4556666776654
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.25 E-value=1.8 Score=39.64 Aligned_cols=97 Identities=6% Similarity=0.045 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-C--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---c-CCcHHHH
Q 015351 194 GWLSYIKFELRYNEVERARQIYERFVQCH-P--K----VSTWIKYAKFEMKMGEVDRARNVYERAVEK---L-ADDEEAE 262 (408)
Q Consensus 194 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~-p~~~~~~ 262 (408)
+...++.++...|++.+|..++....... . + .++++.-..++...+++..|..++.++... . +......
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34455566666666666666665554321 1 1 234555555666666666666666654321 1 1111123
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 015351 263 QLFVAFAEFEERCKETERARCIYKFALD 290 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 290 (408)
.++...|.++...++|.+|-..|..++.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444555666666666666666666654
No 256
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=95.21 E-value=0.41 Score=36.66 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhc---cCHH-HHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 125 HTLWLKYAEVEMKN---KFIN-HARNVWDRAVTLLPRV---------DQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 125 ~~~~~~~a~~~~~~---~~~~-~A~~~~~~al~~~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
...|..+....... |..+ .-..+++++++...++ ..+|..++.+. +.+..+|.-+....-.
T Consensus 19 L~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG 92 (164)
T 2wvi_A 19 LDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIG 92 (164)
T ss_dssp HHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcc
Confidence 36777777654431 2211 2345677777664332 24666666552 2355556655543322
Q ss_pred ---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 015351 192 ---QQGWLSYIKFELRYNEVERARQIYERFVQCH 222 (408)
Q Consensus 192 ---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 222 (408)
...|..++.++...|++.+|..+|+..++..
T Consensus 93 ~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 93 VSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6667777777777777777777777777765
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.21 E-value=0.41 Score=42.97 Aligned_cols=101 Identities=10% Similarity=0.006 Sum_probs=71.5
Q ss_pred hccCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHH
Q 015351 137 KNKFINHARNVWDRAVTLLPRVD------QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVER 210 (408)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 210 (408)
..|+.+.|...+.+|+.+..... ..|..- ...-++... ..+...++..+...|++.+
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~------------~r~~l~~~~-----~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP------------FATALVEDK-----VLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHH------------HHHHHHHHH-----HHHHHHHHHHHHHTTCHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHH------------HHHHHHHHH-----HHHHHHHHHHHHHCCCHHH
Confidence 45788888899999988853321 112111 011111110 1234456777888999999
Q ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 015351 211 ARQIYERFVQCHP-KVSTWIKYAKFEMKMGEVDRARNVYERAVEK 254 (408)
Q Consensus 211 A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 254 (408)
++..+.+++..+| +..+|..+...+...|+..+|++.|+++.+.
T Consensus 190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999 5678999999999999999999999987664
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.06 E-value=2.5 Score=40.36 Aligned_cols=266 Identities=9% Similarity=-0.059 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHH---HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 015351 78 KEFEDLIRRVRWNTGVWIKYAKWE---ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 78 ~~~~~~l~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 154 (408)
......+..+|+.+.........+ .+.+++...+..|.. .|.+...-+.++......|+..+|.....++-..
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 355666777787776544433333 345566666654443 3777777777888888888877776666665544
Q ss_pred CCCchHHHHHHHHHHHHcC------------------ChHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHHhhhHHHHHHH
Q 015351 155 LPRVDQLWYKYIHMEEMLG------------------NVAGARQIFERWMHWMPD-Q-QGWLSYIKFELRYNEVERARQI 214 (408)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~------------------~~~~A~~~~~~al~~~p~-~-~~~~~~~~~~~~~~~~~~A~~~ 214 (408)
....+.....+.......| +...|..+.. ..|. . .....+..+.. +...+...
T Consensus 132 ~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~----~l~~~~~~~a~~~~al~~---~p~~~~~~ 204 (618)
T 1qsa_A 132 GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAG----QMPADYQTIASAIISLAN---NPNTVLTF 204 (618)
T ss_dssp SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHH----TCCGGGHHHHHHHHHHHH---CGGGHHHH
T ss_pred CCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH----hCCHHHHHHHHHHHHHHh---ChHhHHHH
Confidence 4333333333333333222 2222222211 1111 0 00001111111 01111110
Q ss_pred HHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 215 YERFVQCHPKV--STWIKYAKFEMKMGEVDRARNVYERAVEKLADD-EEAEQLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 215 ~~~al~~~p~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
.. ...++. .-...++.-.....+.+.|...+.......+-+ .....++..++.-....+...++...+.+....
T Consensus 205 ~~---~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~ 281 (618)
T 1qsa_A 205 AR---TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (618)
T ss_dssp HH---HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred Hh---ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc
Confidence 00 011111 111222222233346777777777665433221 112223333333333344355666666665544
Q ss_pred CCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015351 292 IPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIA 368 (408)
Q Consensus 292 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 368 (408)
.+++. ..-|. +......|+ +..|..+|.+.-...+......+-+|..+...|+.++|..+|+++.+
T Consensus 282 ~~~~~-~~e~~--~r~Alr~~d--------~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 282 SQSTS-LIERR--VRMALGTGD--------RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CCCHH-HHHHH--HHHHHHHTC--------HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCChH-HHHHH--HHHHHHCCC--------HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33321 22232 223344577 44466666554433233455566677777778888888888777664
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.69 Score=42.14 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhccC---CChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC--Cch----HH
Q 015351 91 TGVWIKYAKWEESQKDFNRARSVWERALEVDY---RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP--RVD----QL 161 (408)
Q Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~ 161 (408)
..++..+|.++...|+++.|.++|.++..... ...+++.....++...+++..+...+.++-.... .++ .+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 45778888888888888888888888875432 2357777778888888888888888888765421 112 22
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 015351 162 WYKYIHMEEMLGNVAGARQIFERWMHWM 189 (408)
Q Consensus 162 ~~~~~~~~~~~~~~~~A~~~~~~al~~~ 189 (408)
....|.++...++|..|...|-.++...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 3334455555677777777766665543
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.65 E-value=3.2 Score=39.63 Aligned_cols=201 Identities=8% Similarity=-0.062 Sum_probs=113.3
Q ss_pred cCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC------------------hHHHHHHHHHHHhccCHHHHHHHH
Q 015351 87 VRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRN------------------HTLWLKYAEVEMKNKFINHARNVW 148 (408)
Q Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~~~~~~a~~~~~~~~~~~A~~~~ 148 (408)
.|.+...-..++......|+..+|.....++-...... +......+...+..|+...|..+.
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~ 177 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA 177 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36777777888888888898877777666655332222 222222234445555555554443
Q ss_pred HHH-------------HHhCCCchHH-------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCC--HHHHHHHHH
Q 015351 149 DRA-------------VTLLPRVDQL-------------WYKYIHMEEMLGNVAGARQIFERWMHWMPD--QQGWLSYIK 200 (408)
Q Consensus 149 ~~a-------------l~~~p~~~~~-------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~ 200 (408)
... +..+|..... ...++.-.....+.+.|...+.+..+..+- ...+.....
T Consensus 178 ~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 257 (618)
T 1qsa_A 178 GQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDI 257 (618)
T ss_dssp HTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHH
Confidence 321 1122322111 111122223334677788777776543322 222222222
Q ss_pred HH---HHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Q 015351 201 FE---LRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKE 277 (408)
Q Consensus 201 ~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 277 (408)
+. ...+...++...+.+......+.....-.+......|+++.|...|..+-..... .....+-.|..+...|+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~---~~r~~YW~~ra~~~~g~ 334 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE---KDEWRYWQADLLLERGR 334 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG---SHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc---cHhHHHHHHHHHHHcCC
Confidence 22 2233255677777776655555444333444455679999999988765432222 46666777888889999
Q ss_pred hHHHHHHHHHHHh
Q 015351 278 TERARCIYKFALD 290 (408)
Q Consensus 278 ~~~A~~~~~~al~ 290 (408)
.++|..+|+++..
T Consensus 335 ~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 335 EAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.45 E-value=0.26 Score=45.62 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=36.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHM 168 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 168 (408)
.+|++..-.+.+..|...|.+|+...|.+...+..+|.+....|+.-+|.-.|-+++....-.+.++.++..+
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 3444444444445555555555555555555555555555555555555555555554433334444444433
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=2.6 Score=38.88 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=59.6
Q ss_pred HHHcCChHHHHHHHHHHHH------h-----CCC-HHHHHHHHHHHHHhhhHHH----------HHHHHHHHHHhC----
Q 015351 169 EEMLGNVAGARQIFERWMH------W-----MPD-QQGWLSYIKFELRYNEVER----------ARQIYERFVQCH---- 222 (408)
Q Consensus 169 ~~~~~~~~~A~~~~~~al~------~-----~p~-~~~~~~~~~~~~~~~~~~~----------A~~~~~~al~~~---- 222 (408)
+...+++++|.++-...+. . ++- ..+|+.+..++...|.... .+..+-.+++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3455667766665554431 1 111 5677777776666665443 233343343332
Q ss_pred -CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCc
Q 015351 223 -PK--VSTWIKYAKFEMKMGEVDRARNVYERAVEKLAD----DEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKG 295 (408)
Q Consensus 223 -p~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 295 (408)
+. ..++..+...|...+.++.|..+..++. +|. +.+.....+.+|.+..-.++|.+|...+..|+..+|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 22 3567888888999999999999998874 553 22335566777999999999999999999999988764
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.28 Score=44.70 Aligned_cols=97 Identities=10% Similarity=0.114 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---CChH----HH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCH---PKVS----TW 228 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~----~~ 228 (408)
.++..+|.++...|+++.|.++|.++...... .+++.....++...+++..+...+.++.... ++.. +.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45677788888888888888888877765433 6677777777777788888887777775542 2222 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 015351 229 IKYAKFEMKMGEVDRARNVYERAVEKLA 256 (408)
Q Consensus 229 ~~~a~~~~~~~~~~~A~~~~~~al~~~p 256 (408)
...|.++...++|..|...|-.++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 3334555667788888877777766543
No 264
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.32 E-value=2.1 Score=32.78 Aligned_cols=99 Identities=9% Similarity=-0.125 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHh----CCC------
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTL----LPR------ 157 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~------ 157 (408)
|..+..-..++-...-+|++..+.-++.+ -+.....+--..++...+++..|+..++..+.- +|+
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 44445555566667777888877766553 133334444456777888888888888888832 222
Q ss_pred -------ch-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 015351 158 -------VD-QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD 191 (408)
Q Consensus 158 -------~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 191 (408)
+. -.+..+|.++.+.|+.++|+..|.......|-
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 22 34667788888888888888888888877765
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.10 E-value=0.88 Score=42.13 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFE 202 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 202 (408)
....+|++..-...+..|...|.+|....|++...+..+|-+....|+.-.|.-.|.|++..... +.++.++..+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 34456666666666777777777777777777777777777777777777777777777654333 55555554443
No 266
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.99 Score=41.64 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=57.2
Q ss_pred HHHHccCHHHHHHHHHHHH-----------hccCCChHHHHHHHHHHHhccCHHH----------HHHHHHHHHHh----
Q 015351 100 WEESQKDFNRARSVWERAL-----------EVDYRNHTLWLKYAEVEMKNKFINH----------ARNVWDRAVTL---- 154 (408)
Q Consensus 100 ~~~~~g~~~~A~~~~~~al-----------~~~p~~~~~~~~~a~~~~~~~~~~~----------A~~~~~~al~~---- 154 (408)
.+..++++++|..+-..++ ..++-...+|+-+..++...|+... .+..+-.+++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 4456788888887766554 1245567788888888877776543 23344444433
Q ss_pred -CC-CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 015351 155 -LP-RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD--------QQGWLSYIKFELRYNEVERARQIYERFVQCHP 223 (408)
Q Consensus 155 -~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 223 (408)
++ ....++..+.+.|...+.++.|..+..++. .|. ....+.+|.+..-+++|.+|...+..|+..+|
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 22 134678888999999999999999999884 332 33445568888899999999999999999886
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.37 E-value=6.4 Score=35.90 Aligned_cols=166 Identities=9% Similarity=0.016 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHH----hccCHHHHHHHHHHHHHhCC----C--
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEM----KNKFINHARNVWDRAVTLLP----R-- 157 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~al~~~p----~-- 157 (408)
+....+...+..++...|+++.....+.-.......-..+-..+.+... ...+.+. ......+.... +
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccch
Confidence 4455677788888899999988877766555444333333222222211 1122121 11122222211 0
Q ss_pred -----chHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHH----h
Q 015351 158 -----VDQLWYKYIHMEEMLGNVAGARQIFERWMHW----MPD---QQGWLSYIKFELRYNEVERARQIYERFVQ----C 221 (408)
Q Consensus 158 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~ 221 (408)
...+...++.++...|++.+|..++.....- .+. .+++..-..++...+++.+|..+++++.. .
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 1346678999999999999999999887642 111 56777778889999999999999998743 2
Q ss_pred CCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 015351 222 HPKV----STWIKYAKFEMKMGEVDRARNVYERAVEKL 255 (408)
Q Consensus 222 ~p~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 255 (408)
.+.+ ..+...|.++...++|.+|-..|..++...
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 2333 345677888889999999999999998754
No 268
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=87.80 E-value=7.8 Score=29.73 Aligned_cols=180 Identities=11% Similarity=-0.054 Sum_probs=109.2
Q ss_pred ccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 104 QKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFE 183 (408)
Q Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 183 (408)
-.+++.+.-+-.-.. |..++.-..++-++.-.|.+..+.-.+.. ..+ ....+.-..++....++..|+.+++
T Consensus 15 Y~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~----lNT-~Ts~YYk~LCy~klKdYkkA~~~le 86 (242)
T 3kae_A 15 YRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHK----LNT-CTSKYYESLCYKKKKDYKKAIKSLE 86 (242)
T ss_dssp TTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHT----CCB-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHh----cch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666654433333 34445566677788889999887765422 222 3344445678889999999999999
Q ss_pred HHHH--h--CC-------------C--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHH------------
Q 015351 184 RWMH--W--MP-------------D--QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYA------------ 232 (408)
Q Consensus 184 ~al~--~--~p-------------~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a------------ 232 (408)
+.+. . +| . .-.+..+|.++.+.|+.++|+..|.......|--...-++.
T Consensus 87 ~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~ 166 (242)
T 3kae_A 87 SILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKE 166 (242)
T ss_dssp HHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---
T ss_pred HHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchH
Confidence 9993 2 22 2 33466778999999999999999999988776321111110
Q ss_pred HHHHHcCCH-------HHHH--------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 015351 233 KFEMKMGEV-------DRAR--------NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPK 294 (408)
Q Consensus 233 ~~~~~~~~~-------~~A~--------~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 294 (408)
.+ .+.|+- .... ...++-.+..|.- ..-+....+..+...|-.++.+.+|...-+.+|.
T Consensus 167 ~i-~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGi--GSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 167 NV-RQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGI--GSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp ---------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HH-HhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCc--hhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 00 001111 1111 1222222233441 1233456788888999999999999998888875
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.51 E-value=36 Score=34.21 Aligned_cols=190 Identities=8% Similarity=-0.079 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC---C---Ch----HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCch--
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDY---R---NH----TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVD-- 159 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-- 159 (408)
.+.+.+|.++...+ .++...+...+..+. . +. .+-+.+|.++...++ +++...+...+..+....
T Consensus 414 GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~ 490 (963)
T 4ady_A 414 GSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGE 490 (963)
T ss_dssp HHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHH
Confidence 35566666666555 467887777775432 1 11 344556666555554 456667777776443211
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHhCCChH----HHHHHHH
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGW--LSYIKFELRYNEVERARQIYERFVQCHPKVS----TWIKYAK 233 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~a~ 233 (408)
.+-..+|.++...|+.+....++..+.... +..+. ..++......|+.+.+-.+.+.... ..++. ..+.++-
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~~dp~vRygaa~algl 568 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLA-SDESLLRYGGAFTIAL 568 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 244466777777788777777777666533 32222 2222333345666666665555444 33322 2344555
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 234 FEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL 289 (408)
Q Consensus 234 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 289 (408)
.|...|+......++..+.. ++++ +..-.-.++.-....|+.+.+..++....
T Consensus 569 AyaGTGn~~aIq~LL~~~~~-d~~d--~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS-DSND--DVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-CSCH--HHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HhcCCCCHHHHHHHHHHhcc-CCcH--HHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 66788998777778777765 3432 22222222333334566555555554433
No 270
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.30 E-value=0.014 Score=52.91 Aligned_cols=252 Identities=12% Similarity=0.057 Sum_probs=142.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 94 WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
|-.++..+...|++..|...-++ .+++.+|-.....+...+++.-|..+--..+-. |+. .-.+...|...|
T Consensus 173 ~akLAstLV~L~~yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G 243 (624)
T 3lvg_A 173 FGRLASTLVHLGEYQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRG 243 (624)
T ss_dssp CTTTSSSSSSCSGGGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCC
Confidence 33344444444444444443333 367788888888888888887776554444332 221 112455677888
Q ss_pred ChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--C-------ChHHHHHHHHHHHHcCCHHH
Q 015351 174 NVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCH--P-------KVSTWIKYAKFEMKMGEVDR 243 (408)
Q Consensus 174 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p-------~~~~~~~~a~~~~~~~~~~~ 243 (408)
-+++-+++++.++.+... ..++..+|.+|.+. .+++-.+.++.....- | ...+|-.+.-+|..-.+++.
T Consensus 244 ~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~Dn 322 (624)
T 3lvg_A 244 YFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 322 (624)
T ss_dssp CCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHH
Confidence 899999999998876555 78888888888764 3455555544322211 2 24568888888888888886
Q ss_pred HHHHHH-H------------HHHHcCCcHHHHHHHHHHHHHHHHc---------------CChHHHHHHHHHHHh-----
Q 015351 244 ARNVYE-R------------AVEKLADDEEAEQLFVAFAEFEERC---------------KETERARCIYKFALD----- 290 (408)
Q Consensus 244 A~~~~~-~------------al~~~p~~~~~~~~~~~~~~~~~~~---------------~~~~~A~~~~~~al~----- 290 (408)
|....- . .+...+ +.++++....+|... =|..+...+|++.=.
T Consensus 323 A~ltMi~h~~~Aw~h~~Fkdii~KVa----N~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIk 398 (624)
T 3lvg_A 323 AIITMMNHPTDAWKEGQFKDIITKVA----NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVK 398 (624)
T ss_dssp HHHTTTSCHHHHCCGGGGTTTGGGCS----CSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGT
T ss_pred HHHHHHhCChhhccHHHHHHHHHHcc----hHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhH
Confidence 654321 1 111111 355666666666542 255566666665421
Q ss_pred ----hCCCcchHHHHHHHHHHHHHcCCchhHHHHH-----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 015351 291 ----HIPKGRAEDLYRKFVAFEKQYGDREGIEDAI-----VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERARE 361 (408)
Q Consensus 291 ----~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 361 (408)
...+.....+-..+-.++....+.+..+..+ ++ .+.+- +-|+.+ +-.+....-+.+|.+++++.+++.
T Consensus 399 pYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD-~i~LA-~rLEkH-eL~eFRrIAA~LYkkn~rw~qsi~ 475 (624)
T 3lvg_A 399 PYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFD-NISLA-QRLEKH-ELIEFRRIAAYLFKGNNRWKQSVE 475 (624)
T ss_dssp GGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSC-TTHHH-HHHHTC-SSHHHHHHHHHHHHTTCHHHHHSS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-HHHHH-HHHhhC-chHHHHHHHHHHHHhcccHHHHHH
Confidence 1112223567777888888777766533220 00 01111 112222 234455556667777888877765
Q ss_pred H
Q 015351 362 V 362 (408)
Q Consensus 362 ~ 362 (408)
+
T Consensus 476 l 476 (624)
T 3lvg_A 476 L 476 (624)
T ss_dssp C
T ss_pred H
Confidence 4
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.30 E-value=29 Score=29.69 Aligned_cols=27 Identities=4% Similarity=-0.321 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015351 338 MNYDIWFDYIRLEESVGNKERAREVYE 364 (408)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~~~~A~~~~~ 364 (408)
.++.++..+|..+.+.|++.+|+..|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 478899999999999999988888664
No 272
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.48 E-value=47 Score=33.61 Aligned_cols=105 Identities=10% Similarity=-0.048 Sum_probs=59.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-Cch--HHHHHHHHHHHHcC
Q 015351 97 YAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLP-RVD--QLWYKYIHMEEMLG 173 (408)
Q Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~--~~~~~~~~~~~~~~ 173 (408)
+...+...|.++-|. ..+...|.++-.-+.+|.++...|++++|..+|++|-.-.. .+. .......
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~------- 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQ------- 884 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHH-------
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhh-------
Confidence 455556666666443 34456666666667778888888888888888877643211 100 0000000
Q ss_pred ChHHHHHHHHHHHH-hCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 015351 174 NVAGARQIFERWMH-WMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCH 222 (408)
Q Consensus 174 ~~~~A~~~~~~al~-~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 222 (408)
..+. ..+. ...|...+.+..+.+-++.++.+.+.|++.-
T Consensus 885 ----------~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 885 ----------EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp ----------HHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ----------hccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 0000 0111 3355566677777888888888888888754
No 273
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.41 E-value=25 Score=25.97 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=56.3
Q ss_pred cCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 015351 275 CKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVG 354 (408)
Q Consensus 275 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 354 (408)
.|+..+....|-+. .-. .+.........-..|..+.. -+++...+..+|-++.++..++..|.+.|
T Consensus 74 C~NlKrVi~C~~~~---n~~---se~vd~ALd~lv~~~KkDqL--------dki~~~~l~n~~~~~~~l~kia~Ay~Klg 139 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NTL---NEHVNKALDILVIQGKRDKL--------EEIGREILKNNEVSASILVAIANALRRVG 139 (172)
T ss_dssp CSCTHHHHHHHHHT---TCC---CHHHHHHHHHHHHTTCHHHH--------HHHHHHHC--CCSCHHHHHHHHHHHHHTT
T ss_pred hhcHHHHHHHHHHh---cch---HHHHHHHHHHHHHhccHhHH--------HHHHHHHhccCCCChHHHHHHHHHHHHhc
Confidence 56777777777653 222 24444555566677775542 33344445566778999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 015351 355 NKERAREVYERAIAN 369 (408)
Q Consensus 355 ~~~~A~~~~~~al~~ 369 (408)
+..+|.+++.+|-+.
T Consensus 140 ~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 140 DERDATTLLIEACKK 154 (172)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHh
Confidence 999999999999864
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=70.32 E-value=14 Score=23.75 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=12.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 131 YAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 131 ~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
+|..+...|++++|...|-+|+..+|.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444443
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.39 E-value=16 Score=23.43 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=28.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCChHH
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRNHTL 127 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 127 (408)
..+|..+...|++++|...|-+|+...|+-..+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999999999999988876544
No 276
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.63 E-value=1.1e+02 Score=30.75 Aligned_cols=189 Identities=6% Similarity=-0.088 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCh--HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 015351 92 GVWIKYAKWEESQKDFNRARSVWERALEVDYRNH--TLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHME 169 (408)
Q Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 169 (408)
.+-+.+|.++...++ +++...+...+..+.... .+-+.+|.++...|+.+....++..+.....+...-...+|--.
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 355677777777766 456666666665332111 34456677777888888888888777764433222222233333
Q ss_pred HHcCChHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChH----HHHHHHHHHHHcCCH
Q 015351 170 EMLGNVAGARQIFERWMHWMPD----QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVS----TWIKYAKFEMKMGEV 241 (408)
Q Consensus 170 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~a~~~~~~~~~ 241 (408)
...|+.+.+..+.+.... .++ ...-..++..+...|+......++..+... ++.. +...+| +...|+.
T Consensus 535 l~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLG--lI~~g~~ 610 (963)
T 4ady_A 535 INYGRQELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALG--FVLLRDY 610 (963)
T ss_dssp HTTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHH--HHTSSSC
T ss_pred hhCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHH--hhccCCH
Confidence 456888777776665544 344 223344556677788876666688877754 3322 223333 3334555
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--HHHcCCh-HHHHHHHHHHHh
Q 015351 242 DRARNVYERAVEKLADDEEAEQLFVAFAEF--EERCKET-ERARCIYKFALD 290 (408)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~-~~A~~~~~~al~ 290 (408)
+.+..++....+ ..+ +.+....+.. ....|+. .+++..+.+...
T Consensus 611 e~v~rlv~~L~~-~~d----~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 611 TTVPRIVQLLSK-SHN----AHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSHHHHTTTGGG-CSC----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCC----HHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 555555543332 222 3333322222 2223332 678888888765
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.49 E-value=33 Score=34.78 Aligned_cols=110 Identities=8% Similarity=-0.139 Sum_probs=65.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCC--hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC
Q 015351 80 FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV-DYRN--HTLWLKYAEVEMKNKFINHARNVWDRAVTLLP 156 (408)
Q Consensus 80 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 156 (408)
..+.+..-|.++..-+.+|+++...|++++|..+|++|-.- .+.+ .........+ +. ..+...
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~l-------------l~-~~e~~~ 894 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI-------------AE-KYHHQN 894 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHH-------------HH-HTTTCS
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhc-------------cC-cccccc
Confidence 34556667888877788999999999999999999997532 1111 0000000000 00 000111
Q ss_pred CchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHH
Q 015351 157 RVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD------QQGWLSYIKFEL 203 (408)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~ 203 (408)
.....|...+.+....+-++-++..-+.|++.... .++|..+.....
T Consensus 895 ~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~ 947 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 947 (950)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHh
Confidence 12236667777778888888888888888865322 345555554443
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=61.88 E-value=46 Score=24.62 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 015351 226 STWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDH 291 (408)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 291 (408)
+..-.....+...|+.++-.+++...+...+. ++++...++..|.+.|+..+|.+++.+|.+.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~---~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEV---SASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCC---ChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33333345566778888888888776555544 5888888888888888888888888888763
No 279
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=60.60 E-value=1.3e+02 Score=31.61 Aligned_cols=64 Identities=5% Similarity=0.142 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCC-C-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCH
Q 015351 178 ARQIFERWMHWMP-D-QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEV 241 (408)
Q Consensus 178 A~~~~~~al~~~p-~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~ 241 (408)
-.+.|.+.++... . ..+...-..-...++++..|++++.++++..|+.+.+-.++.++..+|=.
T Consensus 1268 ~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~~~~~~~~~~~~~~l~w~ 1333 (1354)
T 3lxu_X 1268 INELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRTRDHFVELAAINGALGHE 1333 (1354)
T ss_dssp HHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCH
Confidence 3445555555432 2 32222223334467999999999999999999888998889888887743
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.74 E-value=86 Score=27.10 Aligned_cols=80 Identities=8% Similarity=-0.049 Sum_probs=47.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHh----hCCC-----------------cchHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 015351 269 AEFEERCKETERARCIYKFALD----HIPK-----------------GRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRF 327 (408)
Q Consensus 269 ~~~~~~~~~~~~A~~~~~~al~----~~p~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~ 327 (408)
..-+.-.++...|...++.-++ ..|. +....-+..++-.-.+.++... +..-..
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~l-----F~~L~~ 268 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDL-----FRQLKS 268 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHH-----HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHH-----HHHHHH
Confidence 3445578888888886655543 2221 1111113333333344555443 555678
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHc
Q 015351 328 QYEDEVRKNP-MNYDIWFDYIRLEESV 353 (408)
Q Consensus 328 ~~~~al~~~p-~~~~~~~~~~~~~~~~ 353 (408)
.|+..+..+| .-....-.+|.+|...
T Consensus 269 ~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 269 KYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 8888888888 6677777788887744
No 281
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=58.51 E-value=52 Score=26.23 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhccCCChHH--------HHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 107 FNRARSVWERALEVDYRNHTL--------WLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~--------~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
.+.|+.+++..-+-.|-...+ -.....++.+.|.+++|..++++....+|.+..+...+..+-...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 456777777666555432211 1233345677777777877777777776666556666655554443
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.96 E-value=22 Score=24.19 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=12.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 131 YAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 131 ~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
+|..+...|+++.|...|-+|+..+|.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444443
No 283
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=52.31 E-value=2.3e+02 Score=29.80 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 015351 209 ERARQIYERFVQCHP--KVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYK 286 (408)
Q Consensus 209 ~~A~~~~~~al~~~p--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 286 (408)
+.-.+.|.+.++-.. +.........-....+++..|.+++.++++..|. .+++..++.++...|= .--..+.+
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~----~~~~~~~~~~~~~l~w-~h~~~~~~ 1340 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRT----RDHFVELAAINGALGH-EHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHSC-HHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 334445555554332 2332222222234689999999999999998875 5677888888776653 33444444
Q ss_pred HHH-hhCCCc
Q 015351 287 FAL-DHIPKG 295 (408)
Q Consensus 287 ~al-~~~p~~ 295 (408)
+.+ -..|..
T Consensus 1341 ~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1341 RMMITAFPSS 1350 (1354)
T ss_dssp HHHHHHSCSS
T ss_pred hhhhhhCccc
Confidence 443 345543
No 284
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=51.13 E-value=22 Score=24.14 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCC
Q 015351 95 IKYAKWEESQKDFNRARSVWERALEVDYRN 124 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (408)
..+|..+...|+++.|...|-+|+...|+-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 567888899999999999999999877653
No 285
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=50.95 E-value=16 Score=24.19 Aligned_cols=12 Identities=25% Similarity=0.291 Sum_probs=4.6
Q ss_pred cCChHHHHHHHH
Q 015351 172 LGNVAGARQIFE 183 (408)
Q Consensus 172 ~~~~~~A~~~~~ 183 (408)
.|++++|..+|.
T Consensus 32 ~g~y~eAl~lY~ 43 (83)
T 2w2u_A 32 EGNAEEAITNYK 43 (83)
T ss_dssp TTCHHHHHHHHH
T ss_pred hccHHHHHHHHH
Confidence 334443333333
No 286
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=49.83 E-value=46 Score=21.92 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=10.8
Q ss_pred HHccCHHHHHHHHHHHHh
Q 015351 102 ESQKDFNRARSVWERALE 119 (408)
Q Consensus 102 ~~~g~~~~A~~~~~~al~ 119 (408)
-+.|++++|+.+|..+++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 355666666666665553
No 287
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=48.91 E-value=18 Score=23.94 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=4.2
Q ss_pred cCChHHHHHHH
Q 015351 172 LGNVAGARQIF 182 (408)
Q Consensus 172 ~~~~~~A~~~~ 182 (408)
.|++++|+.+|
T Consensus 24 ~g~y~eAl~lY 34 (83)
T 2v6y_A 24 EGKVEDAITYY 34 (83)
T ss_dssp TTCHHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 33333333333
No 288
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.69 E-value=90 Score=24.91 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCChHH--------HHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcc
Q 015351 74 LRKRKEFEDLIRRVRWNTGV--------WIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK 139 (408)
Q Consensus 74 ~~A~~~~~~~l~~~p~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 139 (408)
+.|..+++..-+..|-.... -.....++..+|.+++|.+++++....+|.+..+...|..+-.+.+
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 44777777665554432221 2233456788999999999999999988777777777777666554
No 289
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=45.50 E-value=68 Score=21.67 Aligned_cols=54 Identities=20% Similarity=0.047 Sum_probs=36.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhh
Q 015351 347 IRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDV 406 (408)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~ 406 (408)
+..+...|++-+|-++++.+-...|. ++..+|..+|++...+-++. .|+. |..+
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~---~gn~--a~~l 61 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRR---LGRP--GLRN 61 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHH---TTCC--CHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHH---cCcH--HHHH
Confidence 33445568888888888888877743 55678888888877665543 4665 5443
No 290
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.28 E-value=1e+02 Score=23.33 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=43.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHH-HHHHHHHHhhhhcCChhHHhhhc
Q 015351 347 IRLEESVGNKERAREVYERAIANVPPA-EEKRYWQRYIY-LWINYALYEELDAGDMERTRDVY 407 (408)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~w~~~~~-l~~~~a~~~e~~~g~~~~A~~~~ 407 (408)
+..+...|++-+|-++++.+-...+.. .+..+|+.+|+ +...+-++ +.|+...|+.++
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~---~rgN~~GA~~ll 98 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHF---DFEDDDGMRSLF 98 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHH---HHCCHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHH
Confidence 334455699999999999998876544 34679999999 87777654 469998887765
No 291
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.98 E-value=1.6e+02 Score=25.98 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 015351 228 WIKYAKFEMKMGEVDRARNVYERAVEKL-----ADDEEAEQLFVAFAEFEERCKETERARCIYKFAL 289 (408)
Q Consensus 228 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 289 (408)
....+..+...|+.+.|...++++-... .+......++...+..+...+++..+...+-..+
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344455555555555555555543221 1111123334444444455555544444433333
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.81 E-value=1.1e+02 Score=23.20 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=37.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhccCCC---hHHHHHHHH------HHHhccCHHHHHHHHHHHHHh
Q 015351 98 AKWEESQKDFNRARSVWERALEVDYRN---HTLWLKYAE------VEMKNKFINHARNVWDRAVTL 154 (408)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~------~~~~~~~~~~A~~~~~~al~~ 154 (408)
+..++..|++-+|-++++.+-...+.. ..+|..+++ .....||..-|..++.+++..
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344556699999999999988765443 344444444 345567777777777777664
No 293
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=42.46 E-value=65 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCC
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALEVDYRN 124 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (408)
..+-+|+++...+++.+|.+.+..|+...|.+
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 34445666666666666666666666655543
No 294
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=41.26 E-value=1.4e+02 Score=24.17 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCch-------------------HHHHHHHHHHHHcC-----ChHHHHHHHH
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRVD-------------------QLWYKYIHMEEMLG-----NVAGARQIFE 183 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~~~~~~~~~~-----~~~~A~~~~~ 183 (408)
...++.+..+.+++++.....++++..++.-. ..|..+..+..+.. ..-..+.-|+
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i~~yr 87 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 87 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q ss_pred HHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHc
Q 015351 184 RWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAV-----EKL 255 (408)
Q Consensus 184 ~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al-----~~~ 255 (408)
+-++..-. .++...+-..+.-...-.++.-+|.++--. -......+..--.+..-.+.|...|+.|+ ...
T Consensus 88 ~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGD--yyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~ 165 (234)
T 2br9_A 88 QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGD--YHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELP 165 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhcc--HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCC
Q ss_pred CCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 015351 256 ADDEEAEQLFVAFAEFEER-CKETERARCIYKFALD 290 (408)
Q Consensus 256 p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~ 290 (408)
|.+|....+-++++.++.. .+++++|..+.++++.
T Consensus 166 pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 166 PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 295
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=40.57 E-value=2.3 Score=38.99 Aligned_cols=145 Identities=10% Similarity=0.107 Sum_probs=99.4
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 015351 88 RWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIH 167 (408)
Q Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 167 (408)
-+++..|......+...+++.-|.-+--..+- +|+.. -.+...|...|.+++-+.+++.++.+..-+....+.+|-
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaI 271 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 271 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 46788999999999999999888777666653 34432 244566788899999999999999888888888888888
Q ss_pred HHHHcCChHHHHHHHHH---------HHHhCCCHHHHHHHHHHHHHhhhHHHHHHH-------------HHHHHHhCCCh
Q 015351 168 MEEMLGNVAGARQIFER---------WMHWMPDQQGWLSYIKFELRYNEVERARQI-------------YERFVQCHPKV 225 (408)
Q Consensus 168 ~~~~~~~~~~A~~~~~~---------al~~~p~~~~~~~~~~~~~~~~~~~~A~~~-------------~~~al~~~p~~ 225 (408)
+|.+- ++++-.+.++- .++.+.....|..+.-+|....+++.|... |+..+...++.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~ 350 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANV 350 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCS
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchH
Confidence 77654 45555555432 222223356788888888888888877533 23333333455
Q ss_pred HHHHHHHHHHHH
Q 015351 226 STWIKYAKFEMK 237 (408)
Q Consensus 226 ~~~~~~a~~~~~ 237 (408)
+++..-..+|.+
T Consensus 351 EiyYKAi~FYL~ 362 (624)
T 3lvg_A 351 ELYYRAIQFYLE 362 (624)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 666655555543
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.40 E-value=63 Score=21.72 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Q 015351 127 LWLKYAEVEMKNKFINHARNVWDRAV 152 (408)
Q Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~al 152 (408)
.+-..+.-+...|.|++|+.+.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455566666677777766666554
No 297
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.52 E-value=38 Score=26.56 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=18.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 015351 132 AEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLG 173 (408)
Q Consensus 132 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 173 (408)
..++.+.|.+++|..++++....++++..+...+..+-...+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 334555555555555555555555544444444444444333
No 298
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=37.16 E-value=1e+02 Score=28.06 Aligned_cols=62 Identities=8% Similarity=-0.033 Sum_probs=40.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhccC--------C--ChHHHHHHHHHHHhccCHHHHHHHHHHHHHh-CCC
Q 015351 96 KYAKWEESQKDFNRARSVWERALEVDY--------R--NHTLWLKYAEVEMKNKFINHARNVWDRAVTL-LPR 157 (408)
Q Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p--------~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~ 157 (408)
.+-++|.+.|+...+..++...-...+ . -+...+-+|.+++..+++.+|...+..|+.. .|.
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 345677888888888887765433221 1 1245566677777777777777777777777 554
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=37.15 E-value=35 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=19.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 015351 95 IKYAKWEESQKDFNRARSVWERALE 119 (408)
Q Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~ 119 (408)
..+|+-+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4567777778888888888888774
No 300
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.68 E-value=78 Score=22.35 Aligned_cols=39 Identities=3% Similarity=-0.007 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015351 65 DSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERAL 118 (408)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 118 (408)
.+..++..+.+|..+..++|+.+- .|+.+.|+.+|.+.+
T Consensus 11 ~l~~ik~~h~~AF~~Is~AL~~DE---------------~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 11 EIKIIREAYKKAFLFVNKGLNTDE---------------LGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHH
Confidence 445567777888888888877653 266666666666554
No 301
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.96 E-value=1.1e+02 Score=24.15 Aligned_cols=30 Identities=13% Similarity=-0.041 Sum_probs=16.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPR 157 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 157 (408)
.+-+|.+++..+++.+|...+..|+...|.
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 344455555555555555555555555543
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.40 E-value=44 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.023 Sum_probs=24.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 015351 165 YIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELR 204 (408)
Q Consensus 165 ~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 204 (408)
...++...|.+++|.+++++.+..+++ ...-..+..+...
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 345678899999999999998887765 4444445544443
No 303
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=32.81 E-value=44 Score=21.99 Aligned_cols=11 Identities=9% Similarity=-0.001 Sum_probs=4.3
Q ss_pred CChHHHHHHHH
Q 015351 173 GNVAGARQIFE 183 (408)
Q Consensus 173 ~~~~~A~~~~~ 183 (408)
|++++|+.+|.
T Consensus 27 g~y~eAl~~Y~ 37 (85)
T 2v6x_A 27 TQYEEAYTAYY 37 (85)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 34444433333
No 304
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.83 E-value=44 Score=23.72 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=4.5
Q ss_pred hhHHHHHHHHHH
Q 015351 206 NEVERARQIYER 217 (408)
Q Consensus 206 ~~~~~A~~~~~~ 217 (408)
|++++|+.+|..
T Consensus 32 g~y~eAl~lY~~ 43 (117)
T 2cpt_A 32 GNYEEALQLYQH 43 (117)
T ss_dssp TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 333333333333
No 305
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=31.14 E-value=1.2e+02 Score=20.23 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHH
Q 015351 108 NRARSVWERALEVDYRNHTLWLKYAE 133 (408)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~~a~ 133 (408)
+.|+....++-...-+++..|.....
T Consensus 11 ~~A~~YvnkVK~rF~~~p~~Y~~FL~ 36 (89)
T 1g1e_B 11 NHAINYVNKIKNRFQGQPDIYKAFLE 36 (89)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHH
Confidence 34444444444444344444444333
No 306
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.06 E-value=63 Score=20.98 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 163 YKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
..+|+=+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4556667777888888888877765
No 307
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.87 E-value=3.2e+02 Score=24.79 Aligned_cols=66 Identities=8% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcC--C-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCc
Q 015351 230 KYAKFEMKMGEVDRARNVYERAVEKLA--D-----DEEAEQLFVAFAEFEERCKETERARCIYKFALDH-IPKG 295 (408)
Q Consensus 230 ~~a~~~~~~~~~~~A~~~~~~al~~~p--~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~ 295 (408)
.+..+|++.++...+..+++..-...+ . ..+.....+.+|+++...+++.+|...+..|+.. +|.+
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 445667777777777777654433221 1 1123455566677777777777777777777776 6643
No 308
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=29.06 E-value=99 Score=20.78 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015351 93 VWIKYAKWEESQKDFNRARSVWERALE 119 (408)
Q Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (408)
.....++.+...|.|++|+++.+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445667888889999999998888763
No 309
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.83 E-value=2.8e+02 Score=23.89 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCcchHHHHHHHHH
Q 015351 232 AKFEMKMGEVDRARNVYERAVEKL---ADDEEAEQLFVAFAEFEERCKE--TERARCIYKFALDHIPKGRAEDLYRKFVA 306 (408)
Q Consensus 232 a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 306 (408)
+.=|.+.+++++|++++-...... .......++-..+.++|.+.+- -+..+.-+-+.+...|.....
T Consensus 42 ~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~-------- 113 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPV-------- 113 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHH--------
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcH--------
Confidence 333566788888888776543321 1111234444445555554431 123333344444444443210
Q ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015351 307 FEKQYGDREGIEDAIVGKRRFQYEDEVRKN-PMNYDIWFDYIRLEESVGNKERAREVY 363 (408)
Q Consensus 307 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~ 363 (408)
+...+.+|+.+=.+ .... -.++++...+|..+.+.+++.+|...|
T Consensus 114 -----------r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 114 -----------RKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp -----------HHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 11113344444333 2112 247888888999998888888887776
No 310
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=28.49 E-value=2.4e+02 Score=23.03 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCCCch-------------------HHHHHHHHHHHHc-----CChHHHHHHHH
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVTLLPRVD-------------------QLWYKYIHMEEML-----GNVAGARQIFE 183 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~~~~~~~~~-----~~~~~A~~~~~ 183 (408)
...+|.+..+.+++++.....++++..++.-. ..|..+..+..+. ...-..+.-|+
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr 86 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYR 86 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q ss_pred HHHHhCCC---HHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 015351 184 RWMHWMPD---QQGWLSYIKFELRYNEVE--RARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVE----- 253 (408)
Q Consensus 184 ~al~~~p~---~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----- 253 (408)
+-++..-. .++...+-..+.-.-.-. ++.-+|-++--. -...+...+.--.+..-.+.|...|+.|.+
T Consensus 87 ~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGD--yyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~ 164 (248)
T 3uzd_A 87 EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGD--YYRYLAEVATGEKRATVVESSEKAYSEAHEISKEH 164 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhh--HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HcCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 015351 254 KLADDEEAEQLFVAFAEFEER-CKETERARCIYKFALD 290 (408)
Q Consensus 254 ~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~ 290 (408)
..|.+|....+-++++.++.. .+++++|..+.++++.
T Consensus 165 L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 165 MQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 311
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.66 E-value=1.2e+02 Score=19.22 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015351 77 RKEFEDLIRRVRWN-TGVWIKYAKWEESQKDFNRARSVWERALE 119 (408)
Q Consensus 77 ~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (408)
.+.|++++...|.. +.-|...|... .....+.+..|+.+.+
T Consensus 16 ~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 16 LSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 36788888888754 46788888874 3566677777777654
No 312
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=26.91 E-value=1.4e+02 Score=19.83 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH--------------HHHHHHHHhcCCCchh
Q 015351 322 VGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERA--------------REVYERAIANVPPAEE 375 (408)
Q Consensus 322 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A--------------~~~~~~al~~~p~~~~ 375 (408)
++.|+....++-....++++.+.....++..-..-... .+++.++-.+.-++++
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~D 77 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQED 77 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHH
Confidence 66788888888888888899888887776544322222 3778887777777775
No 313
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=25.58 E-value=2.8e+02 Score=22.84 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhC---CCch-------------------HHHHHHHHHHHHcC-----ChHHHHH
Q 015351 128 WLKYAEVEMKNKFINHARNVWDRAVTLL---PRVD-------------------QLWYKYIHMEEMLG-----NVAGARQ 180 (408)
Q Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~-------------------~~~~~~~~~~~~~~-----~~~~A~~ 180 (408)
...++.+..+.+++++.....++++..+ +.-. ..|..+..+..+.. ..-..+.
T Consensus 31 ~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~~~~i~ 110 (260)
T 2npm_A 31 NVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKMCG 110 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHHHHHHH
Q ss_pred HHHHHHHhCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHH---HHcCCHHHHHHHHHHHHH-
Q 015351 181 IFERWMHWMPD---QQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFE---MKMGEVDRARNVYERAVE- 253 (408)
Q Consensus 181 ~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~---~~~~~~~~A~~~~~~al~- 253 (408)
-|++-++..-. .++...+-..+.-...-.++.-+|.++- .+.+.-++.+. .+..-.+.|...|+.|++
T Consensus 111 ~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMK-----GDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~i 185 (260)
T 2npm_A 111 KYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMK-----GDYHRYISEFSTGDSKQSSAEDALKAYKDATVV 185 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHh-----ccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HcCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 015351 254 ---KLADDEEAEQLFVAFAEFEER-CKETERARCIYKFALD 290 (408)
Q Consensus 254 ---~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~ 290 (408)
..|.+|....+-++++.++.. .+++++|..+.++++.
T Consensus 186 A~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 186 AKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 314
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=24.92 E-value=1.3e+02 Score=28.84 Aligned_cols=51 Identities=18% Similarity=0.020 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 015351 124 NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGN 174 (408)
Q Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 174 (408)
........|.-....|++.-|.++...++..+|++..+....+..+.+.|.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 344455666777778888888888888888888888888888888887764
No 315
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.55 E-value=3.7e+02 Score=23.51 Aligned_cols=44 Identities=9% Similarity=-0.161 Sum_probs=26.8
Q ss_pred HHHHHHHHHHh-----CCCchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015351 144 ARNVWDRAVTL-----LPRVDQLWYKYIHMEEMLGNVAGARQIFERWMH 187 (408)
Q Consensus 144 A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 187 (408)
++.+|.+|+.. ...+.--+..+|-++.+.+++.+|...+-.+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55566666554 223445566666677777777777777666543
No 316
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.81 E-value=85 Score=20.06 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015351 77 RKEFEDLIRRVR-WNTGVWIKYAKWEESQKDFNRARSVWERALE 119 (408)
Q Consensus 77 ~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (408)
...|+++|...| ..++-|...|...-. ...++.+..|...++
T Consensus 16 ~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 16 LQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp HHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 367788888777 456788877776543 567777777776543
No 317
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.24 E-value=1.8e+02 Score=27.95 Aligned_cols=48 Identities=8% Similarity=-0.035 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhh
Q 015351 160 QLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNE 207 (408)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~ 207 (408)
......++-....|++.-|.++...++..+|+ ..+....+..+.+.|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 33445566667789999999999999999999 7788888888888775
Done!