BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015354
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 196/330 (59%), Gaps = 20/330 (6%)
Query: 29 NYREALAKSLLFFQGQRSGRLPKDQQITWRSNSGLSDGLFAHVDLTGGYYDAGDNVKFNF 88
+Y++ L SLLF++ QRSGRLP DQ++TWR +S L+D DLTGGY+DAGD VKF F
Sbjct: 4 DYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGF 63
Query: 89 PMAFTTTMLSWSTLEY--GKKMGPELQNARAAIRWATDYLLKCATATPGKLYVGVGDPNA 146
PMA+T T+L+W +++ G L + R A++WATDY +K T + + Y VG +A
Sbjct: 64 PMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHT-SQNEFYGQVGQGDA 122
Query: 147 DHKCWERPEDMDTVRSVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYASLLLRTAK 206
DH W RPEDM R Y + S PGSD+AGET S+VFR D Y++ LL A+
Sbjct: 123 DHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHAR 182
Query: 207 NVLQFAMQYRGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLFRATNDVTYYNFIKSVGD 266
+ FA YRG YSDS+ A FY S + Y+DEL+W AAWL+RATND TY N +S+ D
Sbjct: 183 QLFDFANNYRGKYSDSITDARN-FYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESLYD 240
Query: 267 DGGTDV----FSWDNKFAGAHVLLARGALLNRDKNFEPYRQEAEDFICRILPNSPFTTTQ 322
+ G +WD+K +G VLLA+ L N+ + Y+ + ++ ++ N Q
Sbjct: 241 EFGLQNWGGGLNWDSKVSGVQVLLAK--LTNK----QAYKDTVQSYVNYLINNQ-----Q 289
Query: 323 YTQGGLMYKMPESNLQYVTSISFLLTTYAK 352
T GL+Y L++ + +F++ A+
Sbjct: 290 KTPKGLLYIDMWGTLRHAANAAFIMLEAAE 319
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 207/385 (53%), Gaps = 30/385 (7%)
Query: 29 NYREALAKSLLFFQGQRSGRLPKDQQITWRSNSGLSDGLFAHVDLTGGYYDAGDNVKFNF 88
NY EAL KS+ F++ QRSG+LP++ +++WR +SGL+DG +DLTGG+YDAGD+VKF F
Sbjct: 5 NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64
Query: 89 PMAFTTTMLSWSTLE--YGKKMGPELQNARAAIRWATDYLLKCATATPGKLYVGVGDPNA 146
PMAFT TML+W +E G ++ + +RW DY +K A +P LYV VGD +A
Sbjct: 65 PMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIK-AHPSPNVLYVQVGDGDA 123
Query: 147 DHKCWERPEDMDTVRSVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYASLLLRTAK 206
DHK W E M R + V S PGSDVA ET S+VF DP YA+ L++ AK
Sbjct: 124 DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAK 183
Query: 207 NVLQFAMQYRGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLFRATNDVTY-------YN 259
+ FA YRG YSD + + FY S+SGY+DEL+WGA WL++AT D +Y Y+
Sbjct: 184 QLYTFADTYRGVYSDCVPAGA--FYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYD 241
Query: 260 FIKSVGDDGGTDV------FSWDNKFAGAHVLLARGALLNRDKNFEPYRQEAEDFICRIL 313
F+ + + TD+ +WD+K G +VLLA ++ + Y +A ++
Sbjct: 242 FLST---EQQTDLRSYRWTIAWDDKSYGTYVLLA------KETGKQKYIDDANRWLDYWT 292
Query: 314 PNSPFTTTQYTQGGLMYKMPESNLQYVTSISFLLTTYAKYMRA---TKHYFTCGNMVVNP 370
Y+ GG+ L+Y + +F+ YAK + + Y +N
Sbjct: 293 VGVNGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDDPVRKQRYHDFAVRQINY 352
Query: 371 GLLTRPRKKTGGLYIRCEPNKNVIH 395
L PR + + P +N H
Sbjct: 353 ALGDNPRNSSYVVGFGNNPPRNPHH 377
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 178/350 (50%), Gaps = 26/350 (7%)
Query: 24 AHGNPNYREALAKSLLFFQGQRSGRLPKDQ-QITWRSNSGLSDGLFAHVDLTGGYYDAGD 82
A G NY EAL K++ F++ QRSG+L ++ WR +SGL DG A +DLTGG+YDAGD
Sbjct: 20 ATGAFNYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGD 79
Query: 83 NVKFNFPMAFTTTMLSWSTLEYGK--KMGPELQNARAAIRWATDYLLKCATATPGK--LY 138
+VKFN PM+++ ML W+ EY K + + I+WA DY +KC P K Y
Sbjct: 80 HVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKC---HPEKDVYY 136
Query: 139 VGVGDPNADHKCWERPEDMDTVRSVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYA 198
VGD +ADH W E M R Y V S+PGS V ET S++F+K D Y+
Sbjct: 137 YQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYS 196
Query: 199 SLLLRTAKNVLQFAMQYRGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLFRATNDVTYY 258
L+ AK + +FA + SD +A FY S+SG+ DEL W A WL+ ATND +Y
Sbjct: 197 KECLKHAKELFEFADTTK---SDDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYL 253
Query: 259 NFIKSVGDDGGTD----------VFSWDNKFAGAHVLLARGALLNRDKNFEPYRQEAEDF 308
+ +S D G + WD+ G ++LLAR + D Y++ E
Sbjct: 254 DKAESYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLAR---IKNDNG--KYKEAIERH 308
Query: 309 ICRILPNSPFTTTQYTQGGLMYKMPESNLQYVTSISFLLTTYAKYMRATK 358
+ YT GL + +L+Y T+ +FL Y+ + K
Sbjct: 309 LDWWTTGYNGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDWENGDK 358
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 178/344 (51%), Gaps = 23/344 (6%)
Query: 26 GNPNYREALAKSLLFFQGQRSGRLPKDQQITWRSNSGLSDGLFAHVDLTGGYYDAGDNVK 85
G NY EAL KS++F++ QRSG LP D++ WR +SG+ DG VDLTGG+YDAGD+VK
Sbjct: 2 GTYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVK 61
Query: 86 FNFPMAFTTTMLSWSTLEYGKKMGPELQNA--RAAIRWATDYLLKCATATPGKLYVGVGD 143
FN PM++T+ ML+WS E Q I+WA DY +KC TPG Y VGD
Sbjct: 62 FNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKC-NPTPGVYYYQVGD 120
Query: 144 PNADHKCWERPEDMDTVRSVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYASLLLR 203
DH W E M R + V AS PGS V T ++VF+ DP YA +
Sbjct: 121 GGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCIS 180
Query: 204 TAKNVLQFAMQYRGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLFRATNDVTYYN---- 259
AKN+ A + A SD+ G Y S S + D+L W A WL+ ATND TY +
Sbjct: 181 HAKNLFDMADK---AKSDA-GYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAES 236
Query: 260 FIKSVGDDGGTDVFS------WDNKFAGAHVLLARGALLNRDKNFEPYRQEAEDFICRIL 313
++ + G + TD+ + WD+ GA +LLA+ L N+ + Y+ E +
Sbjct: 237 YVPNWGKEQQTDIIAYKWGQXWDDVHYGAELLLAK--LTNK----QLYKDSIEMNLDFWT 290
Query: 314 PNSPFTTTQYTQGGLMYKMPESNLQYVTSISFLLTTYAKYMRAT 357
T YT GL + +L++ T+ +FL YA++ T
Sbjct: 291 TGVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCT 334
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 178/344 (51%), Gaps = 23/344 (6%)
Query: 26 GNPNYREALAKSLLFFQGQRSGRLPKDQQITWRSNSGLSDGLFAHVDLTGGYYDAGDNVK 85
G NY EAL KS++F++ QRSG LP D++ WR +SG+ DG VDLTGG+YDAGD+VK
Sbjct: 2 GTYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVK 61
Query: 86 FNFPMAFTTTMLSWSTLEYGKKMGPELQNA--RAAIRWATDYLLKCATATPGKLYVGVGD 143
FN PM++T+ ML+WS E Q I+WA DY +KC TPG Y VGD
Sbjct: 62 FNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKC-NPTPGVYYYQVGD 120
Query: 144 PNADHKCWERPEDMDTVRSVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYASLLLR 203
DH W E M R + V AS PGS V T ++VF+ DP YA +
Sbjct: 121 GGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCIS 180
Query: 204 TAKNVLQFAMQYRGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLFRATNDVTYYN---- 259
AKN+ A + A SD+ G Y S S + D+L W A WL+ ATND TY +
Sbjct: 181 HAKNLFDMADK---AKSDA-GYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAES 236
Query: 260 FIKSVGDDGGTDVFS------WDNKFAGAHVLLARGALLNRDKNFEPYRQEAEDFICRIL 313
++ + G + TD+ + WD+ GA +LLA+ L N+ + Y+ E +
Sbjct: 237 YVPNWGKEQQTDIIAYKWGQCWDDVHYGAELLLAK--LTNK----QLYKDSIEMNLDFWT 290
Query: 314 PNSPFTTTQYTQGGLMYKMPESNLQYVTSISFLLTTYAKYMRAT 357
T YT GL + +L++ T+ +FL YA++ T
Sbjct: 291 TGVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCT 334
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 182/345 (52%), Gaps = 26/345 (7%)
Query: 24 AHGNPNYREALAKSLLFFQGQRSGRLPKDQQITWRSNSGLSDGLFAHVDLTGGYYDAGDN 83
A G+ NY EAL K+++F++ Q SG+LP + WR +S L DG +DLTGG++DAGD+
Sbjct: 22 ASGSFNYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDH 81
Query: 84 VKFNFPMAFTTTMLSWSTLEYGKKM--GPELQNARAAIRWATDYLLKCATATPGK--LYV 139
VKFN PM++T TMLSW+ EY +L++ I W DY +KC P K Y
Sbjct: 82 VKFNLPMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKC---HPSKYVYYY 138
Query: 140 GVGDPNADHKCWERPEDMDTVRSVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYAS 199
VGD + DH W E M R + V+ S+PGS V ET S+V + +P A+
Sbjct: 139 QVGDGSKDHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAA 198
Query: 200 LLLRTAKNVLQFAMQYRGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLFRATNDVTYY- 258
L+ AK + +FA + SD+ +A +Y S+SG+ DEL W A WL+ ATND TY
Sbjct: 199 TYLQHAKELYEFAEVTK---SDAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLT 255
Query: 259 ---NFIKSVGDDGGTDVFS------WDNKFAGAHVLLARGALLNRDKNFEPYRQEAEDFI 309
+++++ G++ WD+ GA +LLA+ + +D Y+Q E +
Sbjct: 256 KAESYVQNWPKISGSNTIDYKWAHCWDDVHNGAALLLAK--ITGKD----IYKQIIESHL 309
Query: 310 CRILPNSPFTTTQYTQGGLMYKMPESNLQYVTSISFLLTTYAKYM 354
+YT GL + +L+Y T+ +FL Y+ ++
Sbjct: 310 DYWTTGYNGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWV 354
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 158/345 (45%), Gaps = 42/345 (12%)
Query: 26 GNPNYREALAKSLLFFQGQRSGRLPKDQQI-TWRSNSGLSDGLFAHVDLTGGYYDAGDNV 84
G +Y AL S++FF + G + + WR +DG VDLTGGY+DAGD+V
Sbjct: 2 GTHDYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHV 61
Query: 85 KFNFPMAFTTTMLSWSTLEYGKKMGPELQNAR--AAIRWATDYLLKCATATPGKLYVGVG 142
KF P ++ +L WS E+ + + +++ TDY LK + Y VG
Sbjct: 62 KFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLK-SHPNSTTFYYQVG 120
Query: 143 DPNADHKCWERPEDMDTVR-SVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYASLL 201
+ NADH W PE+ R S+Y S+P SD+ ET L ++ D YA+
Sbjct: 121 EGNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKC 180
Query: 202 LRTAKNVLQFAMQYRGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLFRATNDVTYY--- 258
L AK + +AM G + +G+ FY + S + D+L W A WL+ ATND TY
Sbjct: 181 LNAAKEL--YAM---GKANQGVGNGQS-FYQATS-FGDDLAWAATWLYTATNDSTYITDA 233
Query: 259 -NFI---KSVGDDGGTDVFS--WDNKFAGAHVLLAR--GALLNRDK---NFEPYRQEAED 307
FI ++ ++ D ++ WD+ + A + LA+ G + +D NF ++
Sbjct: 234 EQFITLGNTMNENKMQDKWTMCWDDMYVPAALRLAQITGKQIYKDAIEFNFNYWK----- 288
Query: 308 FICRILPNSPFTTTQYTQGGLMYKMPESNLQYVTSISFLLTTYAK 352
T T GGL + L+Y + S ++ Y K
Sbjct: 289 -----------TQVTTTPGGLKWLSNWGVLRYAAAESMVMLVYCK 322
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 145/328 (44%), Gaps = 51/328 (15%)
Query: 23 NAHGNPNYREALAKSLLFFQGQRSGR-LPKDQQITWR--------------SNSGLSDGL 67
+A G NY +AL S+ F+ G + ++ ++WR N+ +SDG
Sbjct: 33 SAAGEYNYAKALQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNTNMSDGF 92
Query: 68 FA------------HVDLTGGYYDAGDNVKFNFPMAFTTTMLSWSTLEYGKKMGPELQ-- 113
+ VD++GG++DAGD+VKF P A+ + + W E+ + Q
Sbjct: 93 ISSNRSVLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAV 152
Query: 114 NARAAIRWATDYLLKC----ATATPGKLYVGVGDPNADHKCWERPEDMDTVRSVYSVSAS 169
+A +R+ DY ++C A+ VGD + DH W PE+ R + ++
Sbjct: 153 HAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKE 212
Query: 170 NPGSDVAGETXXXXXXXSLVFRKGDPRYASLLLRTAKNVLQFAMQY-RGAYSDSLGSAVC 228
PG+D+ T + F+ DP+YA+ L AK + FA + +G G
Sbjct: 213 KPGTDIISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGEDGPKG- 271
Query: 229 PFYCSYSGYKDELLWGAAWLFRATND-------VTYYNFIKSVGDDGGTDVFSWDNKFAG 281
Y S ++D+ W AAWL+ AT + YY++ G + W++ ++G
Sbjct: 272 --YYGSSKWQDDYCWAAAWLYLATQNEHYLDEAFKYYDYYAPPG-----WIHCWNDVWSG 324
Query: 282 AHVLLAR-GALLNRD-KNFEPYRQEAED 307
+LA L ++D +NFE + A +
Sbjct: 325 TACILAEINDLYDKDSQNFEDRYKRASN 352
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 98/267 (36%), Gaps = 50/267 (18%)
Query: 30 YREALAKSLLFFQGQRSGR-LPKDQQITWRSNSGLSD-----GLFAHVDLTGGYYDAGDN 83
YR+ L L FF Q G LP+D+ W + + G + GG++DAGD
Sbjct: 88 YRDVLEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHDAGDY 147
Query: 84 VKFNFPMAFTTTMLSWS---------------TLEYGKKMGPELQNARAAIRWATDYLLK 128
K+ P A L + ++ + P L+ AR I W LL
Sbjct: 148 GKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPALEVAREEIAW----LLT 203
Query: 129 CATATPGKLYVGVGDPNADHKCWERPEDMDTVRSVYSVSASNPGSDVAGETXXXXXXXSL 188
G +Y V P+ RPED D + +S + + A +L
Sbjct: 204 MQDPATGGVYHKVTTPSFP-PLDTRPEDDDAPLVLSPISYAATATFCAA-----MAHAAL 257
Query: 189 VFRKGDPRYASLLLRTAKNVLQFAMQYRGAYSDSLGSAVCPFYCS---------YSGYKD 239
V+R DP +S A+ A + GA+ + PF+ + +D
Sbjct: 258 VYRPFDPALSSCCADAARR----AYAWLGAHE------MQPFHNPDGILTGEYGDAELRD 307
Query: 240 ELLWGAAWLFRATNDVTYYNFIKSVGD 266
ELLW + L R T D + + + D
Sbjct: 308 ELLWASCALLRMTGDSAWARVCEPLLD 334
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 49/224 (21%)
Query: 72 DLTGGYYDAGDNVKF--NFPMAFTTTM-----------LSWSTLEYGKKMGPELQNARAA 118
D+TGG+YDAGD+ K+ N +A T M +W G PE N
Sbjct: 169 DVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQNNGYPD 228
Query: 119 I----RWATDYLLKCAT------ATPGKLYVGVGD---------PNADHKCWERPEDMDT 159
I RW ++ K + G ++ + D P+ D +
Sbjct: 229 ILDEARWEIEFFKKMQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQP-------RY 281
Query: 160 VRSVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYASLLLRTAKNVLQFAMQYRGAY 219
+R V + + N + +A + +++ DP +A+ L A+ Q A+++ Y
Sbjct: 282 LRPVSTAATLNFAATLA--------QSARLWKDYDPTFAADCLEKAEIAWQAALKHPDIY 333
Query: 220 SDSLGSAVCPFYCSYSG--YKDELLWGAAWLFRATNDVTYYNFI 261
++ + P Y+ DE W A L+ T Y N++
Sbjct: 334 AEYTPGSGGPGGGPYNDDYVGDEFYWAACELYVTTGKDEYKNYL 377
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 49/224 (21%)
Query: 72 DLTGGYYDAGDNVKF--NFPMAFTTTM-----------LSWSTLEYGKKMGPELQNARAA 118
D+TGG+YDAGD+ K+ N +A T M +W G PE N
Sbjct: 169 DVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQNNGYPD 228
Query: 119 I----RWATDYLLKCAT------ATPGKLYVGVGD---------PNADHKCWERPEDMDT 159
I RW ++ K + G ++ + D P+ D +
Sbjct: 229 ILDEARWEIEFFKKMQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQP-------RY 281
Query: 160 VRSVYSVSASNPGSDVAGETXXXXXXXSLVFRKGDPRYASLLLRTAKNVLQFAMQYRGAY 219
+R V + + N + +A + +++ DP +A+ L A+ Q A+++ Y
Sbjct: 282 LRPVSTAATLNFAATLA--------QSARLWKDYDPTFAADCLEKAEIAWQAALKHPDIY 333
Query: 220 SDSLGSAVCPFYCSYSG--YKDELLWGAAWLFRATNDVTYYNFI 261
++ + P Y+ DE W A L+ T Y N++
Sbjct: 334 AEYTPGSGGPGGGPYNDDYVGDEFYWAACELYVTTGKDEYKNYL 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,050,924
Number of Sequences: 62578
Number of extensions: 570044
Number of successful extensions: 1031
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 15
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)