BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>015355
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKS
NEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGF
NGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKA
DMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFD
SSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLIS
DKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSR
KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI

High Scoring Gene Products

Symbol, full name Information P value
AT5G03420 protein from Arabidopsis thaliana 3.9e-77
AT5G39790 protein from Arabidopsis thaliana 1.2e-08
PRKAB1
5'-AMP-activated protein kinase subunit beta-1
protein from Sus scrofa 0.00031

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  015355
        (408 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142669 - symbol:AT5G03420 "AT5G03420" species...   565  3.9e-77   3
TAIR|locus:2167067 - symbol:AT5G39790 "AT5G39790" species...   153  1.2e-08   1
UNIPROTKB|P80387 - symbol:PRKAB1 "5'-AMP-activated protei...    96  0.00031   1


>TAIR|locus:2142669 [details] [associations]
            symbol:AT5G03420 "AT5G03420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 GO:GO:0016301 IPI:IPI00535342
            RefSeq:NP_195962.2 UniGene:At.4867 UniGene:At.54704
            ProteinModelPortal:F4KFB3 SMR:F4KFB3 PRIDE:F4KFB3
            EnsemblPlants:AT5G03420.1 GeneID:831846 KEGG:ath:AT5G03420
            OMA:SFNGWHH ArrayExpress:F4KFB3 Uniprot:F4KFB3
        Length = 598

 Score = 565 (203.9 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
 Identities = 121/204 (59%), Positives = 140/204 (68%)

Query:   205 LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQK 263
             LNGSAL  K+I     VN          G  G D D   E R+RENQ+EID L+FML QK
Sbjct:   398 LNGSALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQK 457

Query:   264 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQY 323
             E+ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y
Sbjct:   458 ELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEY 517

Query:   324 SGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVD 383
              GDG  VEV GSFNGW HR+ M+                  WST+LWLYPGTYEIKFIVD
Sbjct:   518 CGDGNAVEVTGSFNGWQHRVGMELQASKSIGKQK------CWSTLLWLYPGTYEIKFIVD 571

Query:   384 GQWKVDPQRESVTKGGICNNILRV 407
             GQW  DPQ++SVT+G I NNIL+V
Sbjct:   572 GQWITDPQKDSVTRGHISNNILKV 595

 Score = 190 (71.9 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
 Identities = 39/66 (59%), Positives = 51/66 (77%)

Query:    62 EELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSS-TKPGF 120
             EEL +++ +F++  GL E HVPSMKELSAHGR DLANIVRRRGYKFI++L+ +S  +   
Sbjct:    63 EELRSEIMQFVALAGLPEGHVPSMKELSAHGRVDLANIVRRRGYKFIKELVANSGMEEDC 122

Query:   121 NGFVAE 126
             N  VA+
Sbjct:   123 NELVAD 128

 Score = 53 (23.7 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query:   180 ADMEEKVANFIQNGDLDII 198
             + +EEK   FIQNG LD +
Sbjct:   340 SSIEEKTTRFIQNGYLDTV 358

 Score = 37 (18.1 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query:    71 FLSTVGLSESHVPS 84
             +L TVG  E+ +P+
Sbjct:   354 YLDTVGADENDIPN 367

 Score = 37 (18.1 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query:   300 SDKDEELIAAEESLSGLEVVEIQYS--GD----GEIVE 331
             ++K   L   E SL+G+  +E  +S  GD    GEI E
Sbjct:   156 AEKQGSLSKDESSLAGVLSLENSFSNLGDSNHSGEITE 193


>TAIR|locus:2167067 [details] [associations]
            symbol:AT5G39790 "AT5G39790" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=IDA] [GO:0030247
            "polysaccharide binding" evidence=IDA] EMBL:CP002688 GO:GO:0009507
            GO:GO:0030247 GO:GO:0016301 IPI:IPI00528927 RefSeq:NP_568573.2
            UniGene:At.26168 ProteinModelPortal:F4KFV1 SMR:F4KFV1 PRIDE:F4KFV1
            DNASU:833975 EnsemblPlants:AT5G39790.1 GeneID:833975
            KEGG:ath:AT5G39790 OMA:EAMSMEY Uniprot:F4KFV1
        Length = 273

 Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 50/169 (29%), Positives = 84/169 (49%)

Query:   245 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ-TKAVTEINKAEKLISDKD 303
             +R+E+  EI ++K  L   E+E+  L +  E E   L + Q ++ ++       L+S  D
Sbjct:   116 KRQEH--EITNIKTELALMELEVQALVKLAE-EIANLGIPQGSRKISGKYIQSHLLSRLD 172

Query:   304 EELIAAEESLSGLEV-----VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXX 358
                   +E + G+E      V + + G  E V+V GSF+GW  R  +             
Sbjct:   173 AVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTK--- 229

Query:   359 XXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 407
                   +ST L+L PG YE+KF+VDG+W++ P+  +  +G + NN+L V
Sbjct:   230 ------FSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVV 272


>UNIPROTKB|P80387 [details] [associations]
            symbol:PRKAB1 "5'-AMP-activated protein kinase subunit
            beta-1" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006633 "fatty acid biosynthetic process"
            evidence=IEA] GO:GO:0005634 CAZy:CBM48 eggNOG:NOG238368
            HOGENOM:HOG000230597 HOVERGEN:HBG050430 OrthoDB:EOG4G1MH4
            GO:GO:0006633 ProteinModelPortal:P80387 SMR:P80387 STRING:P80387
            ArrayExpress:P80387 Uniprot:P80387
        Length = 122

 Score = 96 (38.9 bits), Expect = 0.00031, P = 0.00031
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query:   291 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 343
             ++  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct:    10 DLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNWS--- 66

Query:   344 KMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICN 402
             K+                   +  +L L  G ++ KF+VDGQW  DP    VT   G  N
Sbjct:    67 KLPLTRSHNN-----------FVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVN 115

Query:   403 NILRV 407
             NI++V
Sbjct:   116 NIIQV 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      408       339   0.00094  116 3  11 22  0.43    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  233 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.67u 0.10s 34.77t   Elapsed:  00:00:02
  Total cpu time:  34.67u 0.10s 34.77t   Elapsed:  00:00:02
  Start:  Fri May 10 20:13:39 2013   End:  Fri May 10 20:13:41 2013

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