BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015355
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKF 380
I++S G+ V ++GSFN W +I + + +L L G ++ KF
Sbjct: 14 IRWSEGGKEVFISGSFNNWSTKIPLIKSHND-------------FVAILDLPEGEHQYKF 60
Query: 381 IVDGQWKVDPQRESVTKG-GICNNILRV 407
VDGQW DP VT G NN++ V
Sbjct: 61 FVDGQWVHDPSEPVVTSQLGTINNLIHV 88
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 322 QYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFI 381
+++G G+ V ++GSFN W ++ + + +L L G ++ KF
Sbjct: 16 RWTGGGKEVYLSGSFNNWS-KLPLTRSQNN-------------FVAILDLPEGEHQYKFF 61
Query: 382 VDGQWKVDPQRESVTKG-GICNNILRV 407
VDGQW DP VT G NNI++V
Sbjct: 62 VDGQWTHDPSEPIVTSQLGTVNNIIQV 88
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 322 QYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFI 381
+++G G+ V ++GSFN W K+ + +L L G ++ KF
Sbjct: 16 RWTGGGKEVYLSGSFNNWS---KLPXTRSQNN-----------FVAILDLPEGEHQYKFF 61
Query: 382 VDGQWKVDPQRESVTKG-GICNNILRV 407
VDGQW DP VT G NNI++V
Sbjct: 62 VDGQWTHDPSEPIVTSQLGTVNNIIQV 88
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 319 VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEI 378
VEI++ G V V GSF W I + + L L PGT+
Sbjct: 6 VEIRWQQGGSKVYVTGSFTKWRKMIGL----------IPDSDNNGSFHVKLRLLPGTHRF 55
Query: 379 KFIVDGQWKV 388
+FIVD + +V
Sbjct: 56 RFIVDNELRV 65
>pdb|3OV9|A Chain A, Structure Of The Nucleoprotein From Rift Valley Fever
Virus
pdb|3OV9|B Chain B, Structure Of The Nucleoprotein From Rift Valley Fever
Virus
pdb|3OV9|C Chain C, Structure Of The Nucleoprotein From Rift Valley Fever
Virus
Length = 245
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 155 CFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQ 214
+P+ + PSF G V P+L G Y +A ++ +Q R + N T ++
Sbjct: 139 AYPRHMMHPSFAGMVDPSLPGDYLRAILDAHSLYLLQF-------SRVINPNLRGRTKEE 191
Query: 215 IASFATVNHPLSEDHLGTGVEGADFDSSEARR 246
+A AT P++ ++F S E RR
Sbjct: 192 VA--ATFTQPMN------AAVNSNFISHEKRR 215
>pdb|3LYF|A Chain A, Crystal Structure Of The Rift Valley Fever Virus
Nucleocapsid Protein
pdb|3LYF|B Chain B, Crystal Structure Of The Rift Valley Fever Virus
Nucleocapsid Protein
pdb|3LYF|C Chain C, Crystal Structure Of The Rift Valley Fever Virus
Nucleocapsid Protein
pdb|3LYF|D Chain D, Crystal Structure Of The Rift Valley Fever Virus
Nucleocapsid Protein
pdb|4H5M|A Chain A, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer
pdb|4H5M|B Chain B, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer
pdb|4H5M|C Chain C, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer
pdb|4H5M|D Chain D, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer
pdb|4H5M|E Chain E, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer
pdb|4H5M|F Chain F, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer
pdb|4H5O|A Chain A, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|B Chain B, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|C Chain C, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|D Chain D, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|E Chain E, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|F Chain F, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|G Chain G, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|H Chain H, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|I Chain I, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5O|J Chain J, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Pentamer Bound To Single-Stranded Rna
pdb|4H5P|A Chain A, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Tetramer Bound To Single-Stranded Rna
pdb|4H5P|B Chain B, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Tetramer Bound To Single-Stranded Rna
pdb|4H5P|C Chain C, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Tetramer Bound To Single-Stranded Rna
pdb|4H5P|D Chain D, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Tetramer Bound To Single-Stranded Rna
pdb|4H5Q|A Chain A, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Dna
pdb|4H5Q|B Chain B, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Dna
pdb|4H5Q|C Chain C, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Dna
pdb|4H6F|A Chain A, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|B Chain B, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|C Chain C, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|D Chain D, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|E Chain E, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|F Chain F, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|G Chain G, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|H Chain H, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|I Chain I, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|J Chain J, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|K Chain K, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|L Chain L, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|M Chain M, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|N Chain N, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|O Chain O, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|P Chain P, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|Q Chain Q, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6F|R Chain R, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|A Chain A, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|B Chain B, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|C Chain C, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|D Chain D, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|E Chain E, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|F Chain F, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|G Chain G, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|H Chain H, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|I Chain I, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|J Chain J, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|K Chain K, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|L Chain L, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|M Chain M, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|N Chain N, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|O Chain O, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|P Chain P, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|Q Chain Q, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna.
pdb|4H6G|R Chain R, Crystal Structure Of Rift Valley Fever Virus Nucleocapsid
Protein Hexamer Bound To Single-Stranded Rna. This Entry
Contains Three Out Of Six Hexamers Bound To Rna
Length = 245
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 155 CFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQ 214
+P+ + PSF G V P+L G Y +A ++ +Q R + N T ++
Sbjct: 139 AYPRHMMHPSFAGMVDPSLPGDYLRAILDAHSLYLLQF-------SRVINPNLRGRTKEE 191
Query: 215 IASFATVNHPLSEDHLGTGVEGADFDSSEARR 246
+A AT P++ ++F S E RR
Sbjct: 192 VA--ATFTQPMN------AAVNSNFISHEKRR 215
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 330 VEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVD 389
VE++G GW RI + W L G +E K+I+DG+W +
Sbjct: 184 VEISGLDIGWGQRIPL-----------TLGKGTGFWILKRELPEGQFEYKYIIDGEWTHN 232
Query: 390 PQRESV--TKGGICNNILRVI 408
+ K G NN +V+
Sbjct: 233 EAEPFIGPNKDGHTNNYAKVV 253
>pdb|1YGG|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobacillus Succinogenes
pdb|1YLH|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobaccilus Succinogenes In Complex With
Manganese And Pyruvate
Length = 560
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 85 MKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGF 123
+KEL+ G D+ IV Y+ QL + TKPG GF
Sbjct: 30 VKELNDLGLTDVKEIVYNPSYE---QLFEEETKPGLEGF 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,967,005
Number of Sequences: 62578
Number of extensions: 336942
Number of successful extensions: 931
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 20
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)