BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015355
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus
GN=Prkab1 PE=1 SV=2
Length = 270
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 291 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 343
+I +E++ + + EE +A + L + Q ++G G+ V ++GSFN W
Sbjct: 45 DIFHSEEIKAPEKEEFLAWQHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103
Query: 344 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 402
PL +R + +L L G ++ KF VDGQW DP VT + G N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150
Query: 403 NILRV 407
NI++V
Sbjct: 151 NIIQV 155
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus
GN=Prkab1 PE=1 SV=4
Length = 270
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 22/125 (17%)
Query: 291 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 343
+I E++ + + EE +A + L E Q ++G G+ V ++GSFN W
Sbjct: 45 DIFHTEEMKAPEKEEFLAWQHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103
Query: 344 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 402
PL +R + +L L G ++ KF VDGQW DP VT + G N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150
Query: 403 NILRV 407
NI++V
Sbjct: 151 NIIQV 155
>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2
Length = 298
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 14/66 (21%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
I++ G GE+V V GSF+ W +I++ KS ++ +L L PGT KF
Sbjct: 103 IRWRGGGEVVYVTGSFSRWKKKIQL--------------LKSEDYTVLLQLRPGTQRFKF 148
Query: 381 IVDGQW 386
+VDG W
Sbjct: 149 LVDGIW 154
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens
GN=PRKAB2 PE=1 SV=1
Length = 272
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
I++S G+ V ++GSFN W +I + I+S + +L L G ++ KF
Sbjct: 81 IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 127
Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
VDGQW DP VT + G NN++ V
Sbjct: 128 FVDGQWVHDPSEPVVTSQLGTINNLIHV 155
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
I++S G+ V ++GSFN W +I + I+S + +L L G ++ KF
Sbjct: 80 IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126
Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
VDGQW DP VT + G NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
I++S G+ V ++GSFN W +I + I+S + +L L G ++ KF
Sbjct: 80 IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126
Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
VDGQW DP VT + G NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens
GN=PRKAB1 PE=1 SV=4
Length = 270
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
+++G G+ V ++GSFN W PL +R + +L L G ++ KF
Sbjct: 82 FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127
Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
VDGQW DP VT + G NNI++V
Sbjct: 128 FVDGQWTHDPSEPIVTSQLGTVNNIIQV 155
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
+++G G+ V ++GSFN W PL +R + +L L G ++ KF
Sbjct: 82 FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127
Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
VDGQW DP VT + G NN+++V
Sbjct: 128 FVDGQWTHDPSEPVVTSQLGTVNNVIQV 155
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
+++G G+ V ++GSFN W PL +R + +L L G ++ KF
Sbjct: 82 FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127
Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
VDGQW DP VT + G NNI++V
Sbjct: 128 FVDGQWTHDPSEPIVTSQLGTVNNIIQV 155
>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus
scrofa GN=PRKAB1 PE=1 SV=1
Length = 122
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
+++G G+ V ++GSFN W S + RS + + +L L G ++ KF
Sbjct: 47 FRWTGGGKEVYLSGSFNNW------------SKLPLTRSHNNFV--AILDLPEGEHQYKF 92
Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
+VDGQW DP VT + G NNI++V
Sbjct: 93 LVDGQWTHDPSEPVVTSQLGTVNNIIQV 120
>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana
GN=SNF4 PE=1 SV=1
Length = 487
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 327 GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQW 386
G V ++GSF W + M PL + + + L PG ++ KF VDG+W
Sbjct: 31 GRRVFLSGSFTRWTEHVPMSPLEGCPTV----------FQVICNLTPGYHQYKFFVDGEW 80
Query: 387 KVDPQRESVT-KGGICNNIL 405
+ D + V+ GG+ N I
Sbjct: 81 RHDEHQPFVSGNGGVVNTIF 100
>sp|Q04739|GAL83_YEAST SNF1 protein kinase subunit beta-3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GAL83 PE=1 SV=1
Length = 417
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 319 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 378
V+I + G V V GSF GW I + P+P + L L L PGT+
Sbjct: 164 VDITWQQGGNKVYVTGSFTGWRKMIGLVPVPG----------QPGLMHVKLQLPPGTHRF 213
Query: 379 KFIVDGQWK 387
+FIVD + +
Sbjct: 214 RFIVDNELR 222
>sp|P34164|SIP2_YEAST SNF1 protein kinase subunit beta-2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP2 PE=1 SV=3
Length = 415
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 319 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 378
VEI++ G V V GSF W I + P S + + L L PGT+
Sbjct: 166 VEIRWQQGGSKVYVTGSFTKWRKMIGLIP----------DSDNNGSFHVKLRLLPGTHRF 215
Query: 379 KFIVDGQWKV 388
+FIVD + +V
Sbjct: 216 RFIVDNELRV 225
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2
OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
Length = 289
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIK 379
I + G+ + V GS++ W R ++ RS K T++ + P G YE +
Sbjct: 106 ITWCHGGKEIAVEGSWDNWKTRSRLQ-----------RSGKDF---TIMKVLPSGVYEYR 151
Query: 380 FIVDGQWKVDPQ 391
FIVDGQW+ P+
Sbjct: 152 FIVDGQWRHAPE 163
>sp|Q4I298|MRS2_GIBZE Mitochondrial inner membrane magnesium transporter MRS2
OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=MRS2 PE=3 SV=1
Length = 498
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 267 LSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQ---Y 323
LS L++ I++ KL + ++ +K V+ + KL+ D E+L+ A++ L+ + + E Y
Sbjct: 268 LSELEDDIDRHKLRMLLILSKRVSTFEQKAKLVRDAIEDLLEADDDLADMYLTEKTHDLY 327
Query: 324 SGDGEIVEVAGSFNGWH 340
G+ + EV +H
Sbjct: 328 RGEDDHTEVEMLLESYH 344
>sp|Q7SFQ9|MRS2_NEUCR Mitochondrial inner membrane magnesium transporter mrs2
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=mrs2 PE=3 SV=1
Length = 547
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 267 LSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQ---Y 323
LS L++ I++EKL + ++ +K V+ + KL+ D EEL+ A++ L+ + + E Y
Sbjct: 317 LSELEDDIDREKLRVLLVLSKRVSTFEQKAKLVRDAIEELLEADDDLASMYLTEKTHDLY 376
Query: 324 SGDGEIVEV 332
G+ + E+
Sbjct: 377 RGEDDHTEI 385
>sp|Q6C8H7|LPE10_YARLI Mitochondrial inner membrane magnesium transporter LPE10
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=LPE10 PE=3 SV=1
Length = 455
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 267 LSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVE 320
LS L++ I++EKL ++Q+K ++ + LI D +EL+ +E L+GL + E
Sbjct: 247 LSELEQDIDREKLRHLLIQSKKLSAFLQKATLIRDVIDELLDTDEDLAGLYLTE 300
>sp|Q7V5U2|ATPB_PROMM ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT
9313) GN=atpD PE=3 SV=1
Length = 488
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANF--IQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K +EE +A F I +G+LD + ++A L G+
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVK--LEETIAGFNMIMSGELDHLPEQAFYLVGN 471
>sp|Q46J68|ATPB_PROMT ATP synthase subunit beta OS=Prochlorococcus marinus (strain
NATL2A) GN=atpD PE=3 SV=1
Length = 488
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K + K N I +G+LD + ++A L GS
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVKLEDTIKGFNMILSGELDQLPEQAFYLVGS 471
>sp|A2C4I4|ATPB_PROM1 ATP synthase subunit beta OS=Prochlorococcus marinus (strain
NATL1A) GN=atpD PE=3 SV=1
Length = 488
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K + K N I +G+LD + ++A L GS
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVKLEDTIKGFNMILSGELDQLPEQAFYLVGS 471
>sp|Q318V4|ATPB_PROM9 ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT
9312) GN=atpD PE=3 SV=1
Length = 486
Score = 35.4 bits (80), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANF--IQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K +EE +A F I +G+LD + ++A L G+
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVK--LEETIAGFNMILSGELDDLPEQAFYLVGN 471
>sp|A9BCC6|ATPB_PROM4 ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT
9211) GN=atpD PE=3 SV=1
Length = 488
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANF--IQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K +EE +A F I +G+LD + ++A L G+
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVK--LEETIAGFNMILSGELDNLPEQAFYLVGN 471
>sp|A2C6Z4|ATPB_PROM3 ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT
9303) GN=atpD PE=3 SV=2
Length = 488
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANF--IQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K +EE +A F I G+LD + ++A L G+
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVK--LEETIAGFNMILAGELDHLPEQAFYLVGN 471
>sp|P11048|LMNA_XENLA Lamin-A OS=Xenopus laevis GN=lmna PE=2 SV=1
Length = 665
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 248 ENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELI 307
E Q EI + + +LS+L++Q+ + L L+ E + + +L++DKD E+
Sbjct: 283 EAQEEIQQSRIRIDSLSAQLSQLQKQLAAREAKLRDLEDAYARERDSSRRLLADKDREMA 342
Query: 308 AAEESLSG-----LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSS 351
+ E+++I+ + D EI G R+++ P P++
Sbjct: 343 EMRARMQQQLDEYQELLDIKLALDMEINAYRKLLEGEEERLRLSPSPNT 391
>sp|Q7VA76|ATPB_PROMA ATP synthase subunit beta OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=atpD PE=3 SV=1
Length = 488
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANF--IQNGDLDIIEDRAMILNGSALTSKQI 215
K LS P FV E+ ++G Y K +E+ +A F I +G+LD + ++A L G+ K+
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVK--LEDTIAGFNMILSGELDDLPEQAFYLVGNITEVKEK 478
Query: 216 A 216
A
Sbjct: 479 A 479
>sp|A3PES6|ATPB_PROM0 ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT
9301) GN=atpD PE=3 SV=1
Length = 486
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANF--IQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K +E+ +A F I +G+LD + ++A L G+
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVK--LEDTIAGFNMILSGELDDLPEQAFYLVGN 471
>sp|A2BT12|ATPB_PROMS ATP synthase subunit beta OS=Prochlorococcus marinus (strain
AS9601) GN=atpD PE=3 SV=1
Length = 486
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANF--IQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K +E+ +A F I +G+LD + ++A L G+
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVK--LEDTIAGFNMILSGELDDLPEQAFYLVGN 471
>sp|A8G6T8|ATPB_PROM2 ATP synthase subunit beta OS=Prochlorococcus marinus (strain MIT
9215) GN=atpD PE=3 SV=1
Length = 486
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANF--IQNGDLDIIEDRAMILNGS 208
K LS P FV E+ ++G Y K +E+ +A F I +G+LD + ++A L G+
Sbjct: 421 KFLSQPFFVAEIFTGMSGKYVK--LEDTIAGFNMILSGELDDLPEQAFYLVGN 471
>sp|Q6EIZ1|K22E_CANFA Keratin, type II cytoskeletal 2 epidermal OS=Canis familiaris
GN=KRT2 PE=2 SV=1
Length = 633
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 247 RENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEEL 306
+E ++EI L M+ + + E++ +K+Q + + A++ + K + A+ +SD +E L
Sbjct: 402 KEVKMEISELNRMIQRLQGEIAHVKKQCKSVQEAIAEAEQKGEHAVKDAQGKLSDLEEAL 461
Query: 307 IAAEESLSGL-----EVVEIQYSGDGEIVEVAGSFNGWHHRIKMD 346
A E L+GL E++ ++ + D EI G R+ D
Sbjct: 462 QQAREDLAGLLRDYQELMNVKLALDVEIATYRKLLEGEECRMSGD 506
>sp|A5GV55|ATPB_SYNR3 ATP synthase subunit beta OS=Synechococcus sp. (strain RCC307)
GN=atpD PE=3 SV=1
Length = 488
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 158 KSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGS 208
K LS P FV E+ + G Y K D K I +G+LD + + A L G+
Sbjct: 421 KFLSQPFFVAEIFTGMPGQYVKLDETIKGFQMILSGELDDLPEAAFYLVGN 471
>sp|Q74KB1|RNY_LACJO Ribonuclease Y OS=Lactobacillus johnsonii (strain CNCM I-12250 /
La1 / NCC 533) GN=rny PE=3 SV=1
Length = 540
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 12/69 (17%)
Query: 243 EARRRENQL-----EIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEK 297
E R+EN+L IDH +L QK+ +L++ + QI+K LQ + + + N+A++
Sbjct: 103 EVSRQENRLLQREDAIDHKDSLLDQKDSQLTQKENQIKK-------LQAQVLEKENRADQ 155
Query: 298 LISDKDEEL 306
L+++++++L
Sbjct: 156 LVTEREKKL 164
>sp|Q759B8|MRS2_ASHGO Mitochondrial inner membrane magnesium transporter MRS2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=MRS2 PE=3 SV=1
Length = 423
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 53/104 (50%)
Query: 256 LKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSG 315
K + Q + L+ L++QI+++KL ++ +K +T + LI D +EL+ ++E L+
Sbjct: 170 FKHLSKQCGLVLNELEDQIDRDKLRDLLIHSKDLTSFYQKSLLIRDMLDELLESDEDLAA 229
Query: 316 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRS 359
+ + + + + EV ++ + S S+++ I+S
Sbjct: 230 MCLSPAPGTVEADAAEVEMLLETYYKQCDEYVQQSGSLLQNIKS 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,536,402
Number of Sequences: 539616
Number of extensions: 5819214
Number of successful extensions: 39274
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 34340
Number of HSP's gapped (non-prelim): 3044
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)