Query 015355
Match_columns 408
No_of_seqs 144 out of 760
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:32:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 5.5E-24 1.2E-28 169.4 9.5 77 317-406 2-79 (79)
2 cd02861 E_set_proteins_like E 99.8 1.8E-18 3.9E-23 137.3 8.8 77 317-406 2-82 (82)
3 KOG1616 Protein involved in Sn 99.6 1.3E-15 2.7E-20 148.1 7.8 83 316-408 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.2 7.3E-11 1.6E-15 95.1 9.2 77 316-405 5-84 (85)
5 cd02688 E_set E or "early" set 98.9 1.3E-08 2.9E-13 77.0 8.1 70 317-398 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.4 1.2E-06 2.6E-11 73.4 7.8 68 317-396 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.3 5.9E-07 1.3E-11 70.3 4.4 59 317-386 11-74 (85)
8 cd05808 CBM20_alpha_amylase Al 97.7 0.00019 4.1E-09 57.7 8.2 66 318-395 2-81 (95)
9 cd02860 Pullulanase_N_term Pul 97.7 0.00017 3.6E-09 59.1 7.5 68 318-399 9-88 (100)
10 cd02855 Glycogen_branching_enz 97.5 0.00069 1.5E-08 54.7 8.9 77 318-405 22-105 (106)
11 PF00686 CBM_20: Starch bindin 97.5 0.00047 1E-08 56.2 7.8 58 317-382 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.4 0.0003 6.6E-09 76.0 6.6 68 315-394 34-109 (628)
13 cd05814 CBM20_Prei4 Prei4, N-t 97.3 0.0017 3.7E-08 55.5 9.0 55 318-382 2-66 (120)
14 cd05818 CBM20_water_dikinase P 97.3 0.0021 4.5E-08 52.8 8.8 67 317-396 2-80 (92)
15 PRK12313 glycogen branching en 97.2 0.0011 2.5E-08 70.6 8.8 68 317-396 38-112 (633)
16 PRK12568 glycogen branching en 97.1 0.0018 3.8E-08 71.2 9.2 69 315-396 136-212 (730)
17 cd02856 Glycogen_debranching_e 97.1 0.0022 4.7E-08 53.0 7.7 65 318-396 10-91 (103)
18 cd05809 CBM20_beta_amylase Bet 97.0 0.0047 1E-07 51.2 8.8 71 316-395 2-87 (99)
19 cd05820 CBM20_novamyl Novamyl 97.0 0.0075 1.6E-07 50.5 9.8 69 317-397 3-90 (103)
20 cd05811 CBM20_glucoamylase Glu 96.9 0.0088 1.9E-07 49.5 9.4 74 316-397 6-93 (106)
21 PRK14706 glycogen branching en 96.9 0.0032 6.8E-08 68.1 8.4 67 317-396 38-112 (639)
22 cd02852 Isoamylase_N_term Isoa 96.9 0.0038 8.3E-08 52.6 7.2 58 318-386 8-72 (119)
23 PRK14705 glycogen branching en 96.8 0.0043 9.3E-08 71.6 9.2 67 315-393 636-710 (1224)
24 cd02853 MTHase_N_term Maltooli 96.7 0.0087 1.9E-07 47.9 7.7 73 317-405 8-82 (85)
25 PRK05402 glycogen branching en 96.6 0.0071 1.5E-07 65.8 8.9 69 317-396 131-206 (726)
26 PLN02447 1,4-alpha-glucan-bran 96.6 0.0042 9.1E-08 68.6 7.0 63 318-393 115-191 (758)
27 cd05817 CBM20_DSP Dual-specifi 96.6 0.0079 1.7E-07 49.9 7.0 45 326-382 12-62 (100)
28 cd05467 CBM20 The family 20 ca 96.6 0.01 2.2E-07 47.4 7.4 46 326-382 12-65 (96)
29 cd05813 CBM20_genethonin_1 Gen 96.5 0.011 2.3E-07 48.3 7.2 53 318-382 2-62 (95)
30 TIGR02402 trehalose_TreZ malto 96.5 0.0067 1.5E-07 64.1 7.4 70 319-405 1-73 (542)
31 cd05816 CBM20_DPE2_repeat2 Dis 96.5 0.034 7.4E-07 46.0 10.0 66 319-396 2-84 (99)
32 cd05807 CBM20_CGTase CGTase, C 96.3 0.042 9E-07 45.5 9.5 74 316-397 2-90 (101)
33 cd05810 CBM20_alpha_MTH Glucan 96.1 0.038 8.2E-07 46.0 8.5 67 318-396 2-86 (97)
34 TIGR01515 branching_enzym alph 96.0 0.023 4.9E-07 60.9 8.4 68 317-396 28-103 (613)
35 PLN02316 synthase/transferase 95.7 0.12 2.5E-06 59.4 12.5 64 314-384 326-398 (1036)
36 PRK05402 glycogen branching en 95.6 0.028 6E-07 61.4 7.1 63 318-393 29-96 (726)
37 cd05815 CBM20_DPE2_repeat1 Dis 95.2 0.067 1.5E-06 44.1 6.5 55 319-382 2-65 (101)
38 PLN02316 synthase/transferase 95.0 0.083 1.8E-06 60.5 8.5 57 315-382 489-557 (1036)
39 PF03423 CBM_25: Carbohydrate 93.9 0.17 3.8E-06 41.6 6.0 63 318-388 3-76 (87)
40 TIGR02104 pulA_typeI pullulana 93.9 0.24 5.3E-06 53.0 8.6 66 318-396 20-95 (605)
41 cd05806 CBM20_laforin Laforin 93.6 0.48 1E-05 41.4 8.5 56 322-382 10-74 (112)
42 PF11806 DUF3327: Domain of un 92.6 0.81 1.8E-05 40.0 8.4 79 317-406 2-111 (122)
43 PRK10439 enterobactin/ferric e 92.4 0.63 1.4E-05 47.9 8.8 84 313-407 35-161 (411)
44 TIGR02100 glgX_debranch glycog 92.0 0.47 1E-05 52.1 7.7 55 318-386 15-75 (688)
45 PLN02950 4-alpha-glucanotransf 91.9 1 2.2E-05 51.3 10.3 70 316-397 152-237 (909)
46 PLN02950 4-alpha-glucanotransf 89.6 1.9 4.2E-05 49.1 9.8 67 317-392 9-90 (909)
47 PLN02960 alpha-amylase 87.8 0.53 1.1E-05 53.5 4.0 59 318-383 129-198 (897)
48 TIGR02102 pullulan_Gpos pullul 86.9 1.7 3.8E-05 50.5 7.5 66 318-395 328-408 (1111)
49 PRK03705 glycogen debranching 86.3 1.7 3.7E-05 47.7 6.7 55 318-386 20-78 (658)
50 cd02857 CD_pullulan_degrading_ 85.5 4.2 9.2E-05 33.1 7.2 58 317-382 16-79 (116)
51 TIGR02103 pullul_strch alpha-1 84.5 4.1 8.9E-05 46.6 8.8 68 317-396 135-216 (898)
52 PRK14510 putative bifunctional 75.9 10 0.00022 44.7 8.5 56 317-386 23-84 (1221)
53 PF01357 Pollen_allerg_1: Poll 61.6 20 0.00044 29.3 5.1 58 317-389 14-77 (82)
54 PLN02877 alpha-amylase/limit d 58.6 30 0.00065 40.3 7.5 64 318-396 223-303 (970)
55 PLN03244 alpha-amylase; Provis 58.1 8.5 0.00018 44.1 3.1 59 319-383 133-201 (872)
56 PF02903 Alpha-amylase_N: Alph 57.0 24 0.00051 30.0 5.0 67 318-392 22-100 (120)
57 PF11896 DUF3416: Domain of un 53.2 10 0.00023 35.8 2.5 40 337-389 55-99 (187)
58 KOG2264 Exostosin EXT1L [Signa 52.9 15 0.00032 41.1 3.8 63 242-304 98-167 (907)
59 KOG0470 1,4-alpha-glucan branc 48.2 22 0.00048 40.3 4.3 43 319-372 115-159 (757)
60 PF03370 CBM_21: Putative phos 47.1 37 0.00081 29.0 4.7 73 318-390 22-106 (113)
61 PF10281 Ish1: Putative stress 45.9 32 0.0007 24.3 3.4 30 66-102 7-36 (38)
62 PF00392 GntR: Bacterial regul 43.9 25 0.00055 26.6 2.9 44 62-107 3-47 (64)
63 COG3794 PetE Plastocyanin [Ene 43.2 71 0.0015 28.9 6.0 52 314-379 59-111 (128)
64 cd01278 aprataxin_related apra 41.2 24 0.00051 28.8 2.5 34 77-111 42-75 (104)
65 smart00345 HTH_GNTR helix_turn 41.0 29 0.00062 24.6 2.6 32 65-96 2-34 (60)
66 KOG0272 U4/U6 small nuclear ri 40.7 40 0.00087 36.2 4.6 61 278-338 132-197 (459)
67 COG1725 Predicted transcriptio 38.9 74 0.0016 28.7 5.4 66 62-129 14-80 (125)
68 PF00730 HhH-GPD: HhH-GPD supe 35.4 37 0.00081 27.6 2.8 35 67-106 17-51 (108)
69 KOG1263 Multicopper oxidases [ 34.7 28 0.0006 38.2 2.5 24 361-384 96-120 (563)
70 TIGR03503 conserved hypothetic 34.6 80 0.0017 33.2 5.6 43 330-385 151-195 (374)
71 TIGR02154 PhoB phosphate regul 32.9 5.7 0.00012 34.1 -2.5 23 85-107 203-225 (226)
72 PF08022 FAD_binding_8: FAD-bi 32.3 15 0.00033 30.6 0.0 12 19-36 47-58 (105)
73 PF07125 DUF1378: Protein of u 29.0 14 0.0003 29.7 -0.7 34 102-135 22-55 (59)
74 PF13473 Cupredoxin_1: Cupredo 28.6 1.2E+02 0.0026 24.9 4.7 17 363-379 74-91 (104)
75 KOG3990 Uncharacterized conser 28.6 32 0.00068 35.0 1.5 29 251-279 232-260 (305)
76 PF03801 Ndc80_HEC: HEC/Ndc80p 28.2 47 0.001 30.3 2.5 48 51-99 28-75 (157)
77 COG0014 ProA Gamma-glutamyl ph 27.8 28 0.00062 37.0 1.1 61 56-118 150-219 (417)
78 PF11797 DUF3324: Protein of u 27.2 2.6E+02 0.0056 24.8 6.9 25 370-394 102-129 (140)
79 TIGR02375 pseudoazurin pseudoa 26.4 2.1E+02 0.0046 25.1 6.1 16 317-332 23-38 (116)
80 PRK00446 cyaY frataxin-like pr 26.3 1.7E+02 0.0036 25.5 5.3 27 362-392 57-83 (105)
81 PHA00451 protein kinase 26.3 1.8E+02 0.0038 30.4 6.3 94 168-271 137-252 (362)
82 TIGR03798 ocin_TIGR03798 bacte 26.0 25 0.00054 27.4 0.2 39 56-113 9-47 (64)
83 PF15513 DUF4651: Domain of un 25.8 48 0.001 26.9 1.8 16 61-76 4-19 (62)
84 PF02970 TBCA: Tubulin binding 25.7 61 0.0013 27.2 2.5 52 250-301 24-77 (90)
85 TIGR02325 C_P_lyase_phnF phosp 25.5 84 0.0018 28.9 3.6 32 61-92 10-42 (238)
86 TIGR02404 trehalos_R_Bsub treh 25.5 84 0.0018 29.1 3.7 60 62-126 3-66 (233)
87 KOG0045 Cytosolic Ca2+-depende 24.9 65 0.0014 35.7 3.2 27 371-397 114-143 (612)
88 PF07862 Nif11: Nitrogen fixat 24.7 51 0.0011 24.1 1.7 17 92-108 28-44 (49)
89 PF14347 DUF4399: Domain of un 24.5 1.3E+02 0.0028 25.4 4.2 32 362-394 50-81 (87)
90 PRK10785 maltodextrin glucosid 24.3 2.8E+02 0.006 30.3 7.7 51 327-385 33-87 (598)
91 PF07495 Y_Y_Y: Y_Y_Y domain; 23.1 75 0.0016 23.5 2.4 22 369-390 34-58 (66)
92 KOG0963 Transcription factor/C 22.1 1.3E+02 0.0028 33.8 4.8 64 251-314 278-341 (629)
93 cd01276 PKCI_related Protein K 22.0 75 0.0016 25.7 2.3 43 77-122 40-82 (104)
94 PF06252 DUF1018: Protein of u 21.3 58 0.0013 28.0 1.6 35 68-106 6-40 (119)
95 smart00230 CysPc Calpain-like 20.9 1.1E+02 0.0024 30.5 3.7 26 371-396 98-126 (318)
96 cd01275 FHIT FHIT (fragile his 20.5 50 0.0011 28.0 1.1 35 77-112 40-74 (126)
97 cd07377 WHTH_GntR Winged helix 20.2 1.6E+02 0.0035 21.1 3.6 33 62-94 4-37 (66)
98 TIGR03337 phnR transcriptional 20.1 2.3E+02 0.005 25.9 5.4 33 62-94 4-37 (231)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=5.5e-24 Score=169.43 Aligned_cols=77 Identities=35% Similarity=0.696 Sum_probs=71.3
Q ss_pred eEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCeec
Q 015355 317 EVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT 396 (408)
Q Consensus 317 r~VTFtW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Ptvt 396 (408)
.+|+|+|.++|++|+|+|+|++|++.++|.+. ..+ |++++.||||.|+|||+|||.|.+||+.|++.
T Consensus 2 ~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~ 68 (79)
T cd02859 2 VPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTET 68 (79)
T ss_pred eEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccC
Confidence 68999999999999999999999988999985 234 99999999999999999999999999999998
Q ss_pred C-CCccceEEE
Q 015355 397 K-GGICNNILR 406 (408)
Q Consensus 397 D-~GnvNNVLe 406 (408)
| +|+.||+|+
T Consensus 69 d~~G~~NN~i~ 79 (79)
T cd02859 69 DDEGNVNNVID 79 (79)
T ss_pred CCCCcEeeeEC
Confidence 7 799999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=1.8e-18 Score=137.28 Aligned_cols=77 Identities=39% Similarity=0.689 Sum_probs=68.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEee-eCCCCCe
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 394 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~-~DPd~Pt 394 (408)
.+|+|+|.++ ++.|+|+|+|++|+ .++|+++ ..|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999998 69999999999998 5789874 569999999999999999999999998 9999997
Q ss_pred ec-C-CCccceEEE
Q 015355 395 VT-K-GGICNNILR 406 (408)
Q Consensus 395 vt-D-~GnvNNVLe 406 (408)
.. + .|+.|+||.
T Consensus 69 ~~~~~~g~~n~v~~ 82 (82)
T cd02861 69 YVDDGFGGKNAVFV 82 (82)
T ss_pred eecCCCCccceEcC
Confidence 66 4 588999873
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.3e-15 Score=148.07 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.2
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCee
Q 015355 316 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 395 (408)
Q Consensus 316 Lr~VTFtW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Ptv 395 (408)
-.+++|+|.++++.|+|.|+|++|...++|.+.. +..|.|++++.|++|.|+|||+|||+|.+|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 3689999999999999999999999989998741 234559999999999999999999999999999999
Q ss_pred cC-CCccceEEEeC
Q 015355 396 TK-GGICNNILRVI 408 (408)
Q Consensus 396 tD-~GnvNNVLeVe 408 (408)
++ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 79999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.21 E-value=7.3e-11 Score=95.10 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=64.1
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEE-EeCCceEEEEEEEcCEeeeCCCCC
Q 015355 316 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRE 393 (408)
Q Consensus 316 Lr~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL-~LPPGrYEYKFIVDGeW~~DPd~P 393 (408)
...|+|+..++ |++|.|.|+|++|.. .+|+++ ..|.|++++ .|.+|.|.|+|+|||.|+.||.++
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~ 71 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP 71 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence 35789987665 999999999998864 789885 579999998 488899999999999999999999
Q ss_pred eec-CCCccceEE
Q 015355 394 SVT-KGGICNNIL 405 (408)
Q Consensus 394 tvt-D~GnvNNVL 405 (408)
... +.+..-|.+
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T cd02858 72 TTKPGRQVDTSGV 84 (85)
T ss_pred ceeecccccceee
Confidence 988 455554543
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.85 E-value=1.3e-08 Score=76.97 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCC-ceEEEEEEEcCEeeeCCCCCe
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 394 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPP-GrYEYKFIVDGeW~~DPd~Pt 394 (408)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.+ |.|.|+|+|||.|.+++.++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4689988876 8999999999997667889874 5699999999987 999999999999999998866
Q ss_pred ecCC
Q 015355 395 VTKG 398 (408)
Q Consensus 395 vtD~ 398 (408)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.39 E-value=1.2e-06 Score=73.39 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=52.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEEe--------CCc-eEEEEEEE-cC
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 384 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~L--------PPG-rYEYKFIV-DG 384 (408)
..++|+..++ |+.|+|.|+||+|+.. .+|.+. ..|+|++.+.. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4678876665 9999999999999864 679874 58999999864 455 56666666 78
Q ss_pred Ee--eeCCCCCeec
Q 015355 385 QW--KVDPQRESVT 396 (408)
Q Consensus 385 eW--~~DPd~Ptvt 396 (408)
+| +.||-...+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 87 5788777655
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.33 E-value=5.9e-07 Score=70.34 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=46.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCeEEEEEE--eCCceEEEEEEEcCEe
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW 386 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNN-W~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~--LPPGrYEYKFIVDGeW 386 (408)
..++|+..++ |+.|.|.+.|++ |... ++|++. ...|+|++++. +++|.+.|+|.|||..
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 5789976665 999999999999 8754 789831 36899999998 8889888888887553
No 8
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.72 E-value=0.00019 Score=57.71 Aligned_cols=66 Identities=26% Similarity=0.536 Sum_probs=48.0
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC-
Q 015355 318 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG- 384 (408)
Q Consensus 318 ~VTFtW~g---~AkeV~VaGS---FNNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG- 384 (408)
+|+|.... .|+.|+|+|+ +.+|++. ++|... ..+.|.+++.||+| .++|||++ +|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 45665543 4899999995 6899854 678753 46789999999987 79999996 24
Q ss_pred -EeeeCCCCCee
Q 015355 385 -QWKVDPQRESV 395 (408)
Q Consensus 385 -eW~~DPd~Ptv 395 (408)
.|...++.-..
T Consensus 70 ~~WE~~~nr~~~ 81 (95)
T cd05808 70 VTWESGPNRTAT 81 (95)
T ss_pred EEEecCCCEEEE
Confidence 47666643333
No 9
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.68 E-value=0.00017 Score=59.11 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=52.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE-----
Q 015355 318 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 385 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGSFNNW~-----~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe----- 385 (408)
.++|+..++ |++|.|.. |++|. ..++|.+. ..|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 478876665 99999987 88886 34678763 6899999986 566654 88888876
Q ss_pred eeeCCCCCeecCCC
Q 015355 386 WKVDPQRESVTKGG 399 (408)
Q Consensus 386 W~~DPd~PtvtD~G 399 (408)
...||-...+...|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 68899888877544
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.52 E-value=0.00069 Score=54.67 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=50.7
Q ss_pred EEEEEEec-CCceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCeEEEEEE-eCCc-eEEEEEEEc-CEe--eeCC
Q 015355 318 VVEIQYSG-DGEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP 390 (408)
Q Consensus 318 ~VTFtW~g-~AkeV~VaGSFNNW~~-~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-rYEYKFIVD-GeW--~~DP 390 (408)
.++|+... .|+.|.|.++|++|.. .++|.++ ...|.|.+.+. +++| .|.|++..+ |.| +.||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 47786555 5999999999999964 3678764 24899999886 6666 444444444 333 5577
Q ss_pred CCCeecCCCccceEE
Q 015355 391 QRESVTKGGICNNIL 405 (408)
Q Consensus 391 d~PtvtD~GnvNNVL 405 (408)
-..-++.....++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 766555443355553
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.51 E-value=0.00047 Score=56.19 Aligned_cols=58 Identities=22% Similarity=0.435 Sum_probs=45.1
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355 317 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 382 (408)
Q Consensus 317 r~VTFtW~g---~AkeV~VaGSFN---NW~~--~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV 382 (408)
..|+|.... .++.|+|+|+.. +|++ .++|..... ......|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~--------~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEG--------TENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESS--------SSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccC--------CCCCCeEEEEEECcCCCEEEEEEEE
Confidence 467887744 489999999996 8997 478876310 1245799999999988 79999998
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.0003 Score=75.95 Aligned_cols=68 Identities=25% Similarity=0.451 Sum_probs=52.5
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE-----e
Q 015355 315 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W 386 (408)
Q Consensus 315 gLr~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe-----W 386 (408)
|...|+|+..++ +..|.|.|+||+|... .+|... +..|.|.++++ +++| +.|||.|++. +
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~ 101 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL 101 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence 566899976555 9999999999999873 344432 36799999999 9999 9999998754 3
Q ss_pred eeCCCCCe
Q 015355 387 KVDPQRES 394 (408)
Q Consensus 387 ~~DPd~Pt 394 (408)
+.||-.-.
T Consensus 102 ~~DP~a~~ 109 (628)
T COG0296 102 KADPYARR 109 (628)
T ss_pred ccCchhhc
Confidence 67775433
No 13
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.29 E-value=0.0017 Score=55.47 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.2
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355 318 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 382 (408)
Q Consensus 318 ~VTFtW~g----~AkeV~VaGS---FNNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV 382 (408)
.|+|.... .++.|+|+|+ +.+|+.. ++|.... ...+.|.+.+.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46666655 3899999999 7899853 6787531 145789999999998 89999999
No 14
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.26 E-value=0.0021 Score=52.84 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=50.0
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC--
Q 015355 317 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 384 (408)
Q Consensus 317 r~VTFtW~g---~AkeV~VaGSF---NNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG-- 384 (408)
..|+|..+. .|+.++|+|+- .+|++..+|.. ..+.|.+.+.+|+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 356666654 38999999988 59997777764 24569999999988 79999998 44
Q ss_pred EeeeCCCCCeec
Q 015355 385 QWKVDPQRESVT 396 (408)
Q Consensus 385 eW~~DPd~Ptvt 396 (408)
.|...++.-...
T Consensus 69 ~WE~g~Nr~~~~ 80 (92)
T cd05818 69 IWEGGNNRVLEL 80 (92)
T ss_pred EEEeCCCEEEEc
Confidence 487766654433
No 15
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.22 E-value=0.0011 Score=70.55 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=50.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCc-eEEEEEEE-cCEe--eeC
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 389 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-rYEYKFIV-DGeW--~~D 389 (408)
..|+|+...+ |+.|+|.|+|++|... .+|.+. ..|+|.+.+. +.+| .|.|++.+ ||.| +.|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 4789987666 9999999999999865 678763 5799999997 4555 66666654 5775 456
Q ss_pred CCCCeec
Q 015355 390 PQRESVT 396 (408)
Q Consensus 390 Pd~Ptvt 396 (408)
|-...+.
T Consensus 106 Pya~~~~ 112 (633)
T PRK12313 106 PFAFYFE 112 (633)
T ss_pred CceEEEe
Confidence 6655443
No 16
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.12 E-value=0.0018 Score=71.23 Aligned_cols=69 Identities=28% Similarity=0.457 Sum_probs=52.5
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEE---cCEe--
Q 015355 315 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW-- 386 (408)
Q Consensus 315 gLr~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIV---DGeW-- 386 (408)
|..-|+|+..++ |+.|.|.|+||+|... .+|.+. ..|+|++.++ +.+| ..|||.| ||.+
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 445789976665 9999999999999864 688763 6899999985 6777 3577777 7876
Q ss_pred eeCCCCCeec
Q 015355 387 KVDPQRESVT 396 (408)
Q Consensus 387 ~~DPd~Ptvt 396 (408)
+.||-.....
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 4688766544
No 17
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.12 E-value=0.0022 Score=53.04 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=47.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcC---------
Q 015355 318 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG--------- 384 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGSFNNW~--~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDG--------- 384 (408)
.++|+..++ |+.|.|.. |++|. ..++|+++ ..|+|.+.+. +.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g~~~p~~~~~ 75 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHGPYDPERGLR 75 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECCccCcccCcc
Confidence 477876665 99999988 66664 34688763 5799999984 66765 79999999
Q ss_pred ----EeeeCCCCCeec
Q 015355 385 ----QWKVDPQRESVT 396 (408)
Q Consensus 385 ----eW~~DPd~Ptvt 396 (408)
....||-...+.
T Consensus 76 ~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 76 FNPAKLLLDPYARALD 91 (103)
T ss_pred cCCCeEEecCCcceEc
Confidence 455666655544
No 18
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.02 E-value=0.0047 Score=51.16 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=48.8
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---c
Q 015355 316 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 383 (408)
Q Consensus 316 Lr~VTFtW~g----~AkeV~VaG---SFNNW~~~I-pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---D 383 (408)
..+|+|.... .++.|+|+| .+.+|+... +|..-. ....+.|.+.+.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 3678888743 389999999 557998641 232210 0245789999999999 79999999 4
Q ss_pred C---EeeeCCCCCee
Q 015355 384 G---QWKVDPQRESV 395 (408)
Q Consensus 384 G---eW~~DPd~Ptv 395 (408)
| .|...++.-..
T Consensus 73 ~~~~~WE~g~nr~~~ 87 (99)
T cd05809 73 GTNKSWQGGQQSWYP 87 (99)
T ss_pred CCeeEEecCCCeeEE
Confidence 4 27666654433
No 19
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=96.99 E-value=0.0075 Score=50.47 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=51.5
Q ss_pred eEEEEEEec-----CCceEEEEeeeC---CCcccc-----ccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355 317 EVVEIQYSG-----DGEIVEVAGSFN---GWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 382 (408)
Q Consensus 317 r~VTFtW~g-----~AkeV~VaGSFN---NW~~~I-----pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV 382 (408)
.+|+|.... .|+.|+|+|+-. +|+... +|.. .....|.+.+.||.| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence 678998863 379999999874 998632 5543 245689999999999 79999998
Q ss_pred ---cCE--eeeCCCCCeecC
Q 015355 383 ---DGQ--WKVDPQRESVTK 397 (408)
Q Consensus 383 ---DGe--W~~DPd~PtvtD 397 (408)
||. |...++.-....
T Consensus 71 ~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 71 APADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred ECCCCCEEEEeCCCEeEECC
Confidence 553 877776555444
No 20
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.90 E-value=0.0088 Score=49.47 Aligned_cols=74 Identities=28% Similarity=0.563 Sum_probs=50.5
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---c
Q 015355 316 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 383 (408)
Q Consensus 316 Lr~VTFtW~g---~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---D 383 (408)
.++|+|.... .|+.|+|+|+. .+|+.. ++|.... .....+.|.+.+.||+| .++|||+| |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3567787654 38999999987 489863 6776420 00134689999999988 59999996 2
Q ss_pred C--EeeeCCCCCeecC
Q 015355 384 G--QWKVDPQRESVTK 397 (408)
Q Consensus 384 G--eW~~DPd~PtvtD 397 (408)
| .|...++.-....
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3877665444333
No 21
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.89 E-value=0.0032 Score=68.06 Aligned_cols=67 Identities=31% Similarity=0.451 Sum_probs=50.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcC---Ee--ee
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 388 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDG---eW--~~ 388 (408)
.-|+|+..++ |++|.|.|+||+|... .+|.+. ..|+|.+.+. +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 4588976665 9999999999999864 689864 4699999986 4555 468888864 44 67
Q ss_pred CCCCCeec
Q 015355 389 DPQRESVT 396 (408)
Q Consensus 389 DPd~Ptvt 396 (408)
||-.....
T Consensus 105 DPYa~~~~ 112 (639)
T PRK14706 105 DPYGSFFE 112 (639)
T ss_pred CcceEEEe
Confidence 87766544
No 22
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.87 E-value=0.0038 Score=52.59 Aligned_cols=58 Identities=26% Similarity=0.427 Sum_probs=42.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCEe
Q 015355 318 VVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 386 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGSFNNW~---~--~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGeW 386 (408)
.++|+..++ |+.|.|.. |++|. + .++|.++. .+..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 8 g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 8 GVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 478876665 99999998 88886 2 35676531 134699999985 67886 6999999854
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.82 E-value=0.0043 Score=71.60 Aligned_cols=67 Identities=33% Similarity=0.574 Sum_probs=49.9
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc---CEe--
Q 015355 315 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 386 (408)
Q Consensus 315 gLr~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD---GeW-- 386 (408)
|..-|.|+..++ |+.|.|.|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 455788965555 9999999999999865 578763 25799999885 78885 5888884 555
Q ss_pred eeCCCCC
Q 015355 387 KVDPQRE 393 (408)
Q Consensus 387 ~~DPd~P 393 (408)
+.||-..
T Consensus 704 k~DPyA~ 710 (1224)
T PRK14705 704 KADPLAF 710 (1224)
T ss_pred cCCcccc
Confidence 5577553
No 24
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.71 E-value=0.0087 Score=47.88 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=50.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEc-CEeeeCCCCCe
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 394 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVD-GeW~~DPd~Pt 394 (408)
..++|+..++ |++|.|.... |. .++|.+. ..|.|++.+..-+|. .|+|.|+ |..+.||....
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 3578876665 9999999643 43 4789864 679999998633775 4777776 56889999887
Q ss_pred ecCCCccceEE
Q 015355 395 VTKGGICNNIL 405 (408)
Q Consensus 395 vtD~GnvNNVL 405 (408)
...+.+-++++
T Consensus 72 ~~~~~~~~s~v 82 (85)
T cd02853 72 QPEGVHGPSQV 82 (85)
T ss_pred CCCCCCCCeEe
Confidence 55432224443
No 25
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.64 E-value=0.0071 Score=65.80 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=49.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCc-eEEEEEEEc-CEe--eeC
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 389 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-rYEYKFIVD-GeW--~~D 389 (408)
..|+|+...+ |++|.|.|+||+|... .+|.+. ...|+|.+.+. +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 3588986666 9999999999999764 578764 25799999885 6677 677776654 455 456
Q ss_pred CCCCeec
Q 015355 390 PQRESVT 396 (408)
Q Consensus 390 Pd~Ptvt 396 (408)
|-.-.+.
T Consensus 200 PYa~~~~ 206 (726)
T PRK05402 200 PYAFAAE 206 (726)
T ss_pred CceEEEe
Confidence 6554433
No 26
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.61 E-value=0.0042 Score=68.62 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=46.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-------eCCceEEEEEEEc---CE
Q 015355 318 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 385 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-------LPPGrYEYKFIVD---Ge 385 (408)
.++|+..+| |++|+|.|+||+|... .+|++. ..|+|++.++ ++.|. .|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence 578865554 9999999999999864 689874 5799999986 34453 6777774 54
Q ss_pred --eeeCCCCC
Q 015355 386 --WKVDPQRE 393 (408)
Q Consensus 386 --W~~DPd~P 393 (408)
.+.||-..
T Consensus 182 ~~~r~dpya~ 191 (758)
T PLN02447 182 WVDRIPAWIK 191 (758)
T ss_pred EEeecCchHh
Confidence 45677544
No 27
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.60 E-value=0.0079 Score=49.90 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=36.7
Q ss_pred CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355 326 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 382 (408)
Q Consensus 326 ~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV 382 (408)
.|+.|+|+|+- .+|+.. ++|... ....|++.+.+|+| .++|||+|
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence 38999999995 689854 577642 45689999999988 69999998
No 28
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.59 E-value=0.01 Score=47.42 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=37.3
Q ss_pred CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCeEEEEEEeCC--c-eEEEEEEE
Q 015355 326 DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 382 (408)
Q Consensus 326 ~AkeV~VaGSFN---NW~~--~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPP--G-rYEYKFIV 382 (408)
.|+.|+|+|+.. +|++ .++|... ...+.|.+.+.+|+ | .++|||++
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 489999999984 8985 3678753 12678999999999 7 79999998
No 29
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.51 E-value=0.011 Score=48.27 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=41.3
Q ss_pred EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355 318 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 382 (408)
Q Consensus 318 ~VTFtW~g----~AkeV~VaGSF---NNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV 382 (408)
+|+|+... +++.|+|+|+- .+|+...+|... ..+.|.+.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 56666544 35778899987 489877888652 45689999999998 59999998
No 30
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.50 E-value=0.0067 Score=64.06 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=51.9
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcC-EeeeCCCCCee
Q 015355 319 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 395 (408)
Q Consensus 319 VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDG-eW~~DPd~Ptv 395 (408)
|+|+..++ |++|.|.+ ++ ..++|.+. ..|+|++++. +.+| +.|+|.||| .-+.||.....
T Consensus 1 v~FrlwAP~A~~V~L~l---~~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRL---NG-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEe---CC-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57876665 99999997 23 35789874 5799999996 7788 789999999 67889988876
Q ss_pred cCCCccceEE
Q 015355 396 TKGGICNNIL 405 (408)
Q Consensus 396 tD~GnvNNVL 405 (408)
..+.+..++|
T Consensus 64 ~~~~~~~S~V 73 (542)
T TIGR02402 64 PDGVHGPSQV 73 (542)
T ss_pred ccCCCCCeEE
Confidence 5432223444
No 31
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.49 E-value=0.034 Score=45.96 Aligned_cols=66 Identities=26% Similarity=0.571 Sum_probs=47.3
Q ss_pred EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc--eEEEEEEE--c--
Q 015355 319 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 383 (408)
Q Consensus 319 VTFtW~g----~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG--rYEYKFIV--D-- 383 (408)
|+|+... .++.|+|+|+. .+|++. ++|... ....|.+.+.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5666544 48999999997 589853 678652 45689999999986 59999998 2
Q ss_pred C--EeeeCCCCCeec
Q 015355 384 G--QWKVDPQRESVT 396 (408)
Q Consensus 384 G--eW~~DPd~Ptvt 396 (408)
| .|..-++.-...
T Consensus 70 ~~~~WE~g~nr~~~~ 84 (99)
T cd05816 70 GVVSWENGPNRELSA 84 (99)
T ss_pred CcEEEEcCCCeEEEC
Confidence 3 276665544433
No 32
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.29 E-value=0.042 Score=45.52 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=49.9
Q ss_pred ceEEEEEEec----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---
Q 015355 316 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 382 (408)
Q Consensus 316 Lr~VTFtW~g----~AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV--- 382 (408)
.++|+|.... .|+.|+|+|+.. +|+.. +.|.... .......|.+.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~--------~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQ--------VVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHcccccccc--------CCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 4678888742 389999999884 99864 2222110 01245689999999999 79999998
Q ss_pred cCE--eeeCCCCCeecC
Q 015355 383 DGQ--WKVDPQRESVTK 397 (408)
Q Consensus 383 DGe--W~~DPd~PtvtD 397 (408)
||. |...++.-....
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 353 766655544433
No 33
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.14 E-value=0.038 Score=46.01 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=47.5
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC
Q 015355 318 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 384 (408)
Q Consensus 318 ~VTFtW~-g---~AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG 384 (408)
+|+|... . .++.|+|+|+.. +|+.. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 4566533 2 489999999885 99853 566542 45689999999998 79999998 22
Q ss_pred -----EeeeCCCCCeec
Q 015355 385 -----QWKVDPQRESVT 396 (408)
Q Consensus 385 -----eW~~DPd~Ptvt 396 (408)
.|...++.-...
T Consensus 70 ~~~~v~WE~g~Nr~~~~ 86 (97)
T cd05810 70 PTAGVQWQGGGNNQLTT 86 (97)
T ss_pred CcceEEEeeCCCEEEeC
Confidence 476666654433
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.03 E-value=0.023 Score=60.87 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=49.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc---CE--eee
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 388 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD---Ge--W~~ 388 (408)
..++|+...| |+.|.|.|+||+|... .+|.+. ...|+|++.+. ..+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4678876555 9999999999999764 578763 24799999886 45665 5888884 55 477
Q ss_pred CCCCCeec
Q 015355 389 DPQRESVT 396 (408)
Q Consensus 389 DPd~Ptvt 396 (408)
||-.....
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88776544
No 35
>PLN02316 synthase/transferase
Probab=95.67 E-value=0.12 Score=59.39 Aligned_cols=64 Identities=13% Similarity=0.357 Sum_probs=45.9
Q ss_pred CCceEEEEEEec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE-cC
Q 015355 314 SGLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 384 (408)
Q Consensus 314 sgLr~VTFtW~g------~AkeV~VaGSFNNW~~~Ip--M~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV-DG 384 (408)
..-.+|++.|+. +..+|+|.|.||+|..... +... +...+.++.|.+++.+|+.-|-.-|+. ||
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~-------~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLV-------KSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceee-------cccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 334689999973 3689999999999997421 1111 011124558999999999999999996 66
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.60 E-value=0.028 Score=61.37 Aligned_cols=63 Identities=21% Similarity=0.104 Sum_probs=45.6
Q ss_pred EEEEE-EecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE--cCE--eeeCCCC
Q 015355 318 VVEIQ-YSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 392 (408)
Q Consensus 318 ~VTFt-W~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV--DGe--W~~DPd~ 392 (408)
-++|+ |...|++|.|.|+||+ ....+|.+. ...|+|++.+++..|.. |||.| ||+ .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 45675 5556999999999996 344688863 35799999999777743 55555 886 4668765
Q ss_pred C
Q 015355 393 E 393 (408)
Q Consensus 393 P 393 (408)
-
T Consensus 96 f 96 (726)
T PRK05402 96 F 96 (726)
T ss_pred c
Confidence 3
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.19 E-value=0.067 Score=44.09 Aligned_cols=55 Identities=20% Similarity=0.483 Sum_probs=39.3
Q ss_pred EEEEEe--cC-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355 319 VEIQYS--GD-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 382 (408)
Q Consensus 319 VTFtW~--g~-AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV 382 (408)
|+|... .. |+.|+|+|+- .+|+.. ++|.... ......|.+.+.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~---------~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSH---------QGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecC---------CCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 455544 33 8999999987 589753 6675310 0133489999999988 69999999
No 38
>PLN02316 synthase/transferase
Probab=94.96 E-value=0.083 Score=60.53 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=44.4
Q ss_pred CceEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE
Q 015355 315 GLEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 382 (408)
Q Consensus 315 gLr~VTFtW~g~------AkeV~VaGSFNNW~~~I------pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV 382 (408)
.-.+|++-|+.. ..+|++.|+||.|.+.. .|.+. ..++.|.+++.+|..-|-..|+-
T Consensus 489 aG~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 489 AGTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence 346899999763 68899999999998752 25443 23356799999999999999987
No 39
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=93.87 E-value=0.17 Score=41.62 Aligned_cols=63 Identities=24% Similarity=0.577 Sum_probs=38.6
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE-cC--Ee
Q 015355 318 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 386 (408)
Q Consensus 318 ~VTFtW~g------~AkeV~VaGSFNNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV-DG--eW 386 (408)
+|+|.|.. ++..|.+.+.|++|... +.|.+.. . ....+.|++++.+|..-|+..|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~-------~-~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC-------V-PDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES-------S----TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee-------e-eecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67888843 37889999999999865 4565521 0 012789999999999999999997 65 56
Q ss_pred ee
Q 015355 387 KV 388 (408)
Q Consensus 387 ~~ 388 (408)
-.
T Consensus 75 DN 76 (87)
T PF03423_consen 75 DN 76 (87)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 40
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.86 E-value=0.24 Score=52.96 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=46.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCeEEEEEE-eCCc-eEEEEEEEcCE--ee
Q 015355 318 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 387 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGSFNNW~~-----~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-rYEYKFIVDGe--W~ 387 (408)
.|+|+..++ |+.|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++..+|. ++
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 478976665 99999997 888853 4678763 5799999996 5666 44444444565 48
Q ss_pred eCCCCCeec
Q 015355 388 VDPQRESVT 396 (408)
Q Consensus 388 ~DPd~Ptvt 396 (408)
.||-.....
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 899776554
No 41
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.58 E-value=0.48 Score=41.35 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=38.3
Q ss_pred EEecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc----eEEEEEEE
Q 015355 322 QYSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 382 (408)
Q Consensus 322 tW~g~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG----rYEYKFIV 382 (408)
++-.++.+|+|+|+- .+|+.. ++|....-+ ........|.+.+.||+| ..+|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt-----~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKA-----LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCccccccccccccc-----ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 344568999999986 599854 566542000 000134579999999986 69999997
No 42
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.57 E-value=0.81 Score=40.03 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=53.2
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEEcCE-
Q 015355 317 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 385 (408)
Q Consensus 317 r~VTFtW~----g~AkeV~VaGSFNNW~~~-----IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIVDGe- 385 (408)
+.|||-|. +....|.|-|..|+...+ -.|.+. ....+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 446889999999999654 346654 356799999999999 88899997533
Q ss_pred ---------------eeeCCCCCeec-C----CCccceEEE
Q 015355 386 ---------------WKVDPQRESVT-K----GGICNNILR 406 (408)
Q Consensus 386 ---------------W~~DPd~Ptvt-D----~GnvNNVLe 406 (408)
=+.||-||... . .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 36799999865 2 367777765
No 43
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.44 E-value=0.63 Score=47.87 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=56.4
Q ss_pred cCCceEEEEEEecC-C-------ceEEEEee--eC--CCccccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEE
Q 015355 313 LSGLEVVEIQYSGD-G-------EIVEVAGS--FN--GWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIK 379 (408)
Q Consensus 313 LsgLr~VTFtW~g~-A-------keV~VaGS--FN--NW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYK 379 (408)
..+.+.|||-|+++ + ..|+|.+. .+ .+.....|.+-+ ...+|..++.||.. +-.|+
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~-----------~tDvW~~~~~~p~~~r~sY~ 103 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIA-----------GTDVWQWSTELSANWRGSYC 103 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccC-----------CCceEEEEEEECcccEEEEE
Confidence 35568999999985 3 24887422 22 132233687753 56799999999999 89999
Q ss_pred EEEc---C-------------------------EeeeCCCCCeecC--CCccceEEEe
Q 015355 380 FIVD---G-------------------------QWKVDPQRESVTK--GGICNNILRV 407 (408)
Q Consensus 380 FIVD---G-------------------------eW~~DPd~PtvtD--~GnvNNVLeV 407 (408)
|+++ . .-+.||.||.... .|+..|+|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 104 FIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 9992 1 1147999998763 3444577654
No 44
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.02 E-value=0.47 Score=52.12 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=41.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCEe
Q 015355 318 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 386 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGSFNNW~~----~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGeW 386 (408)
.|+|+..++ |+.|.|. -|++|.. .++|.+ +..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE------------RTDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc------------CCCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 478876665 9999985 6766542 357865 35799999995 778874 999999854
No 45
>PLN02950 4-alpha-glucanotransferase
Probab=91.93 E-value=1 Score=51.34 Aligned_cols=70 Identities=20% Similarity=0.378 Sum_probs=52.2
Q ss_pred ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc--eEEEEEEE--
Q 015355 316 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV-- 382 (408)
Q Consensus 316 Lr~VTFtW~g----~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG--rYEYKFIV-- 382 (408)
.++|+|+... .|..|+|+|+- .+|+.. ++|.. .....|.+.+.+|.+ ..+|||++
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~ 219 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT 219 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence 4678888654 38999999987 499854 45654 246789999999988 58999998
Q ss_pred -cCE--eeeCCCCCeecC
Q 015355 383 -DGQ--WKVDPQRESVTK 397 (408)
Q Consensus 383 -DGe--W~~DPd~PtvtD 397 (408)
+|. |-..++.-....
T Consensus 220 ~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 220 AEGLVSLELGVNRELSLD 237 (909)
T ss_pred CCCceEEeeCCCceeecC
Confidence 443 877777655554
No 46
>PLN02950 4-alpha-glucanotransferase
Probab=89.58 E-value=1.9 Score=49.13 Aligned_cols=67 Identities=18% Similarity=0.431 Sum_probs=46.5
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC
Q 015355 317 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 384 (408)
Q Consensus 317 r~VTFtW~g---~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG 384 (408)
+.|+|.... .|+.|+|+|+- .+|+.. ++|.... ......|++++.||.| ..+|||++ ||
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~---------~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVH---------QGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceeccccc---------CCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 456665543 38999999998 489854 6775420 1124589999999988 69999995 44
Q ss_pred E---eeeCCCC
Q 015355 385 Q---WKVDPQR 392 (408)
Q Consensus 385 e---W~~DPd~ 392 (408)
. |-..++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666643
No 47
>PLN02960 alpha-amylase
Probab=87.79 E-value=0.53 Score=53.53 Aligned_cols=59 Identities=19% Similarity=0.392 Sum_probs=42.3
Q ss_pred EEEE-EEecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCeEEEEE--EeCCc----e---EEEEEEEc
Q 015355 318 VVEI-QYSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPG----T---YEIKFIVD 383 (408)
Q Consensus 318 ~VTF-tW~g~AkeV~VaGSFNNW~~~I-pM~Kd~ss~~~a~~~sk~~GvFsitL--~LPPG----r---YEYKFIVD 383 (408)
-|.| .|..+|..+.|.|+||||.+.. .|.+ +..+...-|+|.+++ .|.+| . -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 4555 6777799999999999999863 3442 112334679999998 47777 2 35888876
No 48
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=86.91 E-value=1.7 Score=50.50 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=47.4
Q ss_pred EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCeEEEEEE-eCCc-----eEEEEEEEcC--
Q 015355 318 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 384 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGS-FNNW~~---~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-----rYEYKFIVDG-- 384 (408)
.++|+..++ |.+|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 378976665 999999984 455653 4788863 6899999986 4443 3688999876
Q ss_pred --EeeeCCCCCee
Q 015355 385 --QWKVDPQRESV 395 (408)
Q Consensus 385 --eW~~DPd~Ptv 395 (408)
....||-...+
T Consensus 396 ~~~~~~DPYA~al 408 (1111)
T TIGR02102 396 DKVLALDPYAKSL 408 (1111)
T ss_pred ceEEEeChhheEE
Confidence 45778866643
No 49
>PRK03705 glycogen debranching enzyme; Provisional
Probab=86.31 E-value=1.7 Score=47.74 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=40.6
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCEe
Q 015355 318 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 386 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGSFNNW~--~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGeW 386 (408)
.|+|+..++ |+.|.|.. |+++. ..++|.+ +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 478976665 99999986 76653 2467865 35789999985 56775 5999999853
No 50
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=85.53 E-value=4.2 Score=33.14 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=37.9
Q ss_pred eEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE
Q 015355 317 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 382 (408)
Q Consensus 317 r~VTFtW~g---~AkeV~VaGSFNN--W~-~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV 382 (408)
.+|+|+.+. +...|.|.-.-+. |. ..++|.+..+ +.....|++++.++.|++.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 456666543 3678888655443 22 2478877521 112236999999888999999999
No 51
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=84.53 E-value=4.1 Score=46.61 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=47.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc------CE-
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 385 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~--~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD------Ge- 385 (408)
..++|+..++ |+.|.|.+-+++|. ..++|.++ ...|+|++.+. ...|. .|+|.|+ |.
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeE
Confidence 4688976666 99999997776664 23678764 25799999985 45665 3777775 54
Q ss_pred ---eeeCCCCCeec
Q 015355 386 ---WKVDPQRESVT 396 (408)
Q Consensus 386 ---W~~DPd~Ptvt 396 (408)
...||......
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 37888776654
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=75.88 E-value=10 Score=44.67 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=42.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCEe
Q 015355 317 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 386 (408)
Q Consensus 317 r~VTFtW~g~-AkeV~VaGSFNNW~~~----IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGeW 386 (408)
..|+|+...+ ++.|.|. .|+.|... ++|.. +..++|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3588976655 9999997 89988643 45643 35789999875 78887 6999999854
No 53
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=61.59 E-value=20 Score=29.27 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=38.9
Q ss_pred eEEEEEEecC---CceEEEEeee-CCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE-c-CEeeeC
Q 015355 317 EVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 389 (408)
Q Consensus 317 r~VTFtW~g~---AkeV~VaGSF-NNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV-D-GeW~~D 389 (408)
-.|.+.+.++ -..|+|.+.- ..| ++|.+. -...|.+.-.++.|-+.+|+-. | |+|..-
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 4577778765 3679999544 457 588874 3569999877778889999988 7 888653
No 54
>PLN02877 alpha-amylase/limit dextrinase
Probab=58.58 E-value=30 Score=40.31 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=42.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCeEEEEEEe-CCceEEEEEEEc------C
Q 015355 318 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLWL-YPGTYEIKFIVD------G 384 (408)
Q Consensus 318 ~VTFtW~g~-AkeV~VaGSFNNW~~-----~IpM~Kd~ss~~~a~~~sk~~GvFsitL~L-PPGrYEYKFIVD------G 384 (408)
.++|+..++ |..|.|.- |++|.. .++|. ...|+|++.+.- ..| +.|+|.|+ |
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g 287 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVSVYHPSTG 287 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEeecccCCC
Confidence 688876665 99999984 666532 13454 258999999863 455 44777776 3
Q ss_pred E----eeeCCCCCeec
Q 015355 385 Q----WKVDPQRESVT 396 (408)
Q Consensus 385 e----W~~DPd~Ptvt 396 (408)
. ..+||......
T Consensus 288 ~~~~~~v~DPYA~als 303 (970)
T PLN02877 288 KVETCYANDPYARGLS 303 (970)
T ss_pred cccccccCCccceEEe
Confidence 2 25677766554
No 55
>PLN03244 alpha-amylase; Provisional
Probab=58.10 E-value=8.5 Score=44.06 Aligned_cols=59 Identities=19% Similarity=0.422 Sum_probs=40.5
Q ss_pred EEE-EEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEE--EeCCc----eE---EEEEEEc
Q 015355 319 VEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPG----TY---EIKFIVD 383 (408)
Q Consensus 319 VTF-tW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL--~LPPG----rY---EYKFIVD 383 (408)
++| .|..+|.--.|.|+||||.+.-...+. +..+...-|+|.+.+ .|.+| .| ||.|.-|
T Consensus 133 ~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 133 VDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred ceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 444 688889999999999999976433331 112334678999998 47777 23 5777654
No 56
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=56.96 E-value=24 Score=29.96 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=41.2
Q ss_pred EEEEEEec---CCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE--cCE-
Q 015355 318 VVEIQYSG---DGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ- 385 (408)
Q Consensus 318 ~VTFtW~g---~AkeV~Va-GSFNNW----~-~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV--DGe- 385 (408)
+++|+.+. +.++|.|. |+-..| . ..++|.+.. .+..-..|++++.++..+..|.|.| +|+
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~ 93 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGET 93 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEE
Confidence 55555543 47888885 666655 2 236787742 1223457999999999988888887 344
Q ss_pred eeeCCCC
Q 015355 386 WKVDPQR 392 (408)
Q Consensus 386 W~~DPd~ 392 (408)
|-++..-
T Consensus 94 ~~y~~~G 100 (120)
T PF02903_consen 94 YYYGERG 100 (120)
T ss_dssp EEEETTE
T ss_pred EEEeCCc
Confidence 5555443
No 57
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=53.25 E-value=10 Score=35.79 Aligned_cols=40 Identities=33% Similarity=0.776 Sum_probs=22.9
Q ss_pred CCCccccccCCCCCCCccccccccCCCeEEEEEEeC-CceEEEEEE--Ec--CEeeeC
Q 015355 337 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY-PGTYEIKFI--VD--GQWKVD 389 (408)
Q Consensus 337 NNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LP-PGrYEYKFI--VD--GeW~~D 389 (408)
..|. .+||... .+..|...+.+. +|.|+|+.. +| +.|+++
T Consensus 55 ~~w~-~vpM~~~------------gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQ-EVPMTPL------------GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Ccce-eeccccC------------CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 4686 4899863 577999999875 899999987 56 456543
No 58
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=52.94 E-value=15 Score=41.10 Aligned_cols=63 Identities=30% Similarity=0.350 Sum_probs=48.4
Q ss_pred hHhhhccchhh-------hHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccccccchH
Q 015355 242 SEARRRENQLE-------IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 304 (408)
Q Consensus 242 ~~~~~~~~~~E-------~~~l~~m~~qkele~~r~k~qie~~K~~lsvlq~k~~~ei~~AqkLl~eK~~ 304 (408)
+|+.|.+=+.| |+++|..+-|+++|+++||.+||.+.-++.-|......++.-...||-.+.+
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~p 167 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIP 167 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCc
Confidence 44555444444 5678999999999999999999999988888777777777777777765554
No 59
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=48.21 E-value=22 Score=40.27 Aligned_cols=43 Identities=23% Similarity=0.385 Sum_probs=30.6
Q ss_pred EEEEEec-CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEEeC
Q 015355 319 VEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLY 372 (408)
Q Consensus 319 VTFtW~g-~AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~LP 372 (408)
|+++-.+ .+..|.++|+||+|... ..|... ...|.|++.+.-.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k-----------~~~g~w~i~l~~~ 159 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPK-----------DDLGVWEIDLPPK 159 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCcc-----------cccceeEEecCcc
Confidence 7776444 58999999999999875 234311 3678999887633
No 60
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=47.11 E-value=37 Score=29.01 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=40.2
Q ss_pred EEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCc--------eEEEEEEEcCE--
Q 015355 318 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ-- 385 (408)
Q Consensus 318 ~VTFtW~g~--AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG--------rYEYKFIVDGe-- 385 (408)
..++...+- .+.|.|.=+||+|.....+.-.................|...+.|++. .+-.+|.|+|.
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ey 101 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEY 101 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEE
Confidence 344445543 588999999999986543321000000000111233478888888744 56789999996
Q ss_pred eeeCC
Q 015355 386 WKVDP 390 (408)
Q Consensus 386 W~~DP 390 (408)
|-.+.
T Consensus 102 WDNN~ 106 (113)
T PF03370_consen 102 WDNNN 106 (113)
T ss_dssp EESTT
T ss_pred ecCCC
Confidence 65443
No 61
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=45.89 E-value=32 Score=24.32 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.5
Q ss_pred HHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHh
Q 015355 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (408)
Q Consensus 66 ~~~~ef~~~~~l~~~~~psmkels~hgr~dla~~vrr 102 (408)
+||++||...|+|-..-. .-|++|-+.||+
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999865443 567888887775
No 62
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=43.91 E-value=25 Score=26.62 Aligned_cols=44 Identities=23% Similarity=0.405 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCCChHHHhhhcchhHHHHHHhhhHHH
Q 015355 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKF 107 (408)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~-~~psmkels~hgr~dla~~vrrrgyk~ 107 (408)
+.++..|++.+.+-.+|.| .+||..+|.++= +.....=|+.|+.
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~--~vsr~tvr~al~~ 47 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERY--GVSRTTVREALRR 47 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHH--TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHh--ccCCcHHHHHHHH
Confidence 4688999999999999998 789999998853 3333333444443
No 63
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=43.16 E-value=71 Score=28.89 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=34.7
Q ss_pred CCceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEE
Q 015355 314 SGLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 379 (408)
Q Consensus 314 sgLr~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYK 379 (408)
+---+|+|.|... +..|...+...-|... .+.- +.+-.|+.++.- ||.|.|+
T Consensus 59 ~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 59 KPGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCCCEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 3345899999887 9999999888655542 2211 123456666554 9999986
No 64
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=41.23 E-value=24 Score=28.77 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHH
Q 015355 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (408)
Q Consensus 77 l~~~~~psmkels~hgr~dla~~vrrrgyk~i~~l 111 (408)
+|..|++++.||.+..+.+|+.+++ .+.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5888999999999999999999988 677755554
No 65
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=40.99 E-value=29 Score=24.63 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCCC-CCCCChHHHhhhcchhH
Q 015355 65 YNDLREFLSTVGLSE-SHVPSMKELSAHGRDDL 96 (408)
Q Consensus 65 ~~~~~ef~~~~~l~~-~~~psmkels~hgr~dl 96 (408)
+..|+..+....+++ ..+||.+||+++=....
T Consensus 2 ~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~ 34 (60)
T smart00345 2 AERLREDIVSGELRPGDKLPSERELAAQLGVSR 34 (60)
T ss_pred HHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCH
Confidence 566777777777654 46899999998754443
No 66
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=40.66 E-value=40 Score=36.24 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=44.7
Q ss_pred HhhhhhhhhhhhhhccccccccccchH-----HHHHHHhhcCCceEEEEEEecCCceEEEEeeeCC
Q 015355 278 KLALSVLQTKAVTEINKAEKLISDKDE-----ELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNG 338 (408)
Q Consensus 278 K~~lsvlq~k~~~ei~~AqkLl~eK~~-----~LdaAe~aLsgLr~VTFtW~g~AkeV~VaGSFNN 338 (408)
|+.+.+-.++...++...++.+..|-. .+.-...+..+.+|+.+.-......+.++|+|.|
T Consensus 132 Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG 197 (459)
T KOG0272|consen 132 RAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSG 197 (459)
T ss_pred HHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCC
Confidence 444555556666677777777765443 4555566688889999998888889999999986
No 67
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=38.88 E-value=74 Score=28.70 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCCCCCCCcccccccc
Q 015355 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSL 129 (408)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~-~~psmkels~hgr~dla~~vrrrgyk~i~~l~~~~~~~~~~~~~~e~~~ 129 (408)
+.+++-|++=+.+=-|++| .|||+.||..+=.+-..- | .|+|+-+.+.===-+.-+.+-||+|...
T Consensus 14 ~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpnT-v-~raY~eLE~eG~i~t~rg~G~fV~~~~~ 80 (125)
T COG1725 14 EQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPNT-V-QRAYQELEREGIVETKRGKGTFVTEDAK 80 (125)
T ss_pred HHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHHH-H-HHHHHHHHHCCCEEEecCeeEEEcCCch
Confidence 4577888888877778777 699999998776665543 3 4678766543222234555667777643
No 68
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=35.42 E-value=37 Score=27.64 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=31.2
Q ss_pred HHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHhhhHH
Q 015355 67 DLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (408)
Q Consensus 67 ~~~ef~~~~~l~~~~~psmkels~hgr~dla~~vrrrgyk 106 (408)
=++.|...+| .|+.+.|.+-+-.||..++|+.||.
T Consensus 17 ~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 17 IYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 4567788888 8999999999999999999999986
No 69
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.73 E-value=28 Score=38.16 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=20.9
Q ss_pred CCCeEEEEEEeCCc-eEEEEEEEcC
Q 015355 361 KSRLWSTVLWLYPG-TYEIKFIVDG 384 (408)
Q Consensus 361 ~~GvFsitL~LPPG-rYEYKFIVDG 384 (408)
.+|.|-+.++++|| .|.|+|.||+
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCC
Confidence 35688899999999 7999999994
No 70
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=34.62 E-value=80 Score=33.25 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=30.3
Q ss_pred EEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEE--eCCceEEEEEEEcCE
Q 015355 330 VEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 385 (408)
Q Consensus 330 V~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~--LPPGrYEYKFIVDGe 385 (408)
=.+.|+|.+= ...+... ..+|+|+..+. .+||.|+.++.+||.
T Consensus 151 ~~vvg~f~Dd--G~g~DE~-----------p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 151 PIVVGEFEDD--GEGLDER-----------PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CEEEEeeccC--CccCCCC-----------CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 3477888533 2344332 36799998764 689999999999985
No 71
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=32.87 E-value=5.7 Score=34.15 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=18.0
Q ss_pred hHHHhhhcchhHHHHHHhhhHHH
Q 015355 85 MKELSAHGRDDLANIVRRRGYKF 107 (408)
Q Consensus 85 mkels~hgr~dla~~vrrrgyk~ 107 (408)
+|.|..+|+.++...+|+.||+|
T Consensus 203 ~~Kl~~~~~~~~i~~~~~~Gy~~ 225 (226)
T TIGR02154 203 RKALNPFGLEDPVQTVRGAGYRF 225 (226)
T ss_pred HHhhccCCCCCcEEEecccceEe
Confidence 34577778888888889999975
No 72
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=32.30 E-value=15 Score=30.61 Aligned_cols=12 Identities=67% Similarity=1.716 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEee
Q 015355 19 LWQWHPPRKHLSFTICCA 36 (408)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (408)
+||||| |||.++
T Consensus 47 ~~q~HP------FTIas~ 58 (105)
T PF08022_consen 47 FWQWHP------FTIASS 58 (105)
T ss_dssp ------------------
T ss_pred cccccc------cEeecc
Confidence 799998 777544
No 73
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=29.00 E-value=14 Score=29.67 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHhcCCCCCCCcccccccccCCCcc
Q 015355 102 RRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEK 135 (408)
Q Consensus 102 rrgyk~i~~l~~~~~~~~~~~~~~e~~~~g~~~~ 135 (408)
--|||.||+....--..-..|-+++.+.+|+.|+
T Consensus 22 sGGyk~IRnY~r~Kid~aAaeK~s~~~~a~~~p~ 55 (59)
T PF07125_consen 22 SGGYKVIRNYFRRKIDDAAAEKISATASAGSKPE 55 (59)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Confidence 3599999998876554444455677777777765
No 74
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=28.59 E-value=1.2e+02 Score=24.93 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=9.9
Q ss_pred CeEEEEE-EeCCceEEEE
Q 015355 363 RLWSTVL-WLYPGTYEIK 379 (408)
Q Consensus 363 GvFsitL-~LPPGrYEYK 379 (408)
..++.++ .+.||.|+|-
T Consensus 74 ~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp -EEEEEEEE-S-EEEEEB
T ss_pred CEEEEEEcCCCCEEEEEE
Confidence 3566665 7899998873
No 75
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=32 Score=35.00 Aligned_cols=29 Identities=38% Similarity=0.394 Sum_probs=23.3
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 015355 251 LEIDHLKFMLHQKEMELSRLKEQIEKEKL 279 (408)
Q Consensus 251 ~E~~~l~~m~~qkele~~r~k~qie~~K~ 279 (408)
-||++|+-|||||.+++..--.||-+-|+
T Consensus 232 eeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 232 EEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 58999999999999988776666655444
No 76
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=28.16 E-value=47 Score=30.32 Aligned_cols=48 Identities=29% Similarity=0.371 Sum_probs=22.0
Q ss_pred CCcccccccccHHHHHHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHH
Q 015355 51 SSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANI 99 (408)
Q Consensus 51 ~~r~~~~v~~~~el~~~~~ef~~~~~l~~~~~psmkels~hgr~dla~~ 99 (408)
.+|.-+-..--.+.+.+|-+||++-|-. .+-.++|.|..=-.-|..+|
T Consensus 28 d~Rpl~Dk~~q~~~~~~I~~fL~~~~~~-~~~is~k~l~~Pt~kdf~~I 75 (157)
T PF03801_consen 28 DPRPLSDKSYQQECIRKIYEFLSEHGFE-SHPISPKTLKSPTQKDFVEI 75 (157)
T ss_dssp --S-TT-HHHHHHHHHHHHHHHHHTT---SS---TTTTSS--HHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCC-CccccccccCCCCHHHHHHH
Confidence 3443333333457789999999999982 23334444433333344444
No 77
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=27.78 E-value=28 Score=37.05 Aligned_cols=61 Identities=30% Similarity=0.498 Sum_probs=46.7
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCCCCChH--------H-HhhhcchhHHHHHHhhhHHHHHHHHhcCCCC
Q 015355 56 RKVKSNEELYNDLREFLSTVGLSESHVPSMK--------E-LSAHGRDDLANIVRRRGYKFIRQLLKSSTKP 118 (408)
Q Consensus 56 ~~v~~~~el~~~~~ef~~~~~l~~~~~psmk--------e-ls~hgr~dla~~vrrrgyk~i~~l~~~~~~~ 118 (408)
--+.||..|++-|++=|..+|||++.|.=+. | |..-|-.|| |+-|=|..||+....+++-+
T Consensus 150 ea~~Sn~ai~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~--iIPRGg~~Li~~v~~~a~vP 219 (417)
T COG0014 150 EAIHSNAAIVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDL--VIPRGGAGLIRRVVENATVP 219 (417)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHhhcCceeE--EEcCCcHHHHHHHHhCCcCC
Confidence 3578999999999999999999998764322 2 344455555 46677889999999988854
No 78
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=27.22 E-value=2.6e+02 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=18.9
Q ss_pred EeCCceEEEEEEE---cCEeeeCCCCCe
Q 015355 370 WLYPGTYEIKFIV---DGQWKVDPQRES 394 (408)
Q Consensus 370 ~LPPGrYEYKFIV---DGeW~~DPd~Pt 394 (408)
.|+||.|.++-.+ ++.|....+.-+
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~I 129 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTI 129 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEE
Confidence 6899999999888 456987665443
No 79
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=26.42 E-value=2.1e+02 Score=25.11 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.2
Q ss_pred eEEEEEEecCCceEEE
Q 015355 317 EVVEIQYSGDGEIVEV 332 (408)
Q Consensus 317 r~VTFtW~g~AkeV~V 332 (408)
-+|+|+|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3788888777766554
No 80
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=26.30 E-value=1.7e+02 Score=25.48 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=19.9
Q ss_pred CCeEEEEEEeCCceEEEEEEEcCEeeeCCCC
Q 015355 362 SRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR 392 (408)
Q Consensus 362 ~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~ 392 (408)
.-.|.+. |.|-|.|.|. +|.|+++-+.
T Consensus 57 ~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 57 HELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred hheeEec---CCCCccceec-CCeEEECCCC
Confidence 3478776 4677888885 9999987543
No 81
>PHA00451 protein kinase
Probab=26.30 E-value=1.8e+02 Score=30.41 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=60.4
Q ss_pred CCCCCCCCCccchhHHHHHHhhhhcCCcccccc----c------------------ccccCCCccccccccCcccccCCC
Q 015355 168 EVSPNLNGHYEKADMEEKVANFIQNGDLDIIED----R------------------AMILNGSALTSKQIASFATVNHPL 225 (408)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~d----~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 225 (408)
+-.||-++++..----.-.|.+|+.+.-|+-|- . -.+-.|++.+++.=+|-.|-.-+.
T Consensus 137 ~L~~C~r~~nd~h~~ya~~a~~~~e~~~d~~~~~~~~~~FIETCk~IRkFF~GIASFDmHSGNiMf~~~g~p~ITDPVSF 216 (362)
T PHA00451 137 YLNPCYRESNDVHHHYAAAAYIIIECCSDAAEEYPGSQEFIETCKMIRKFFYGIASFDMHSGNIMFDQDGVPYITDPVSF 216 (362)
T ss_pred hccccccccchHHHHHHHHHHHHHhccCCHHhccCCchhHHHHHHHHHHHHhhhhcccccCCceeeCCCCCeEecCCccc
Confidence 456777777754333345677777777776541 1 356789999999988888844445
Q ss_pred CCCCcCCCCCCccccchHhhhccchhhhHHHHHhhhHHHHHHHHHH
Q 015355 226 SEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLK 271 (408)
Q Consensus 226 ~~~~~~~~~~~~~~d~~~~~~~~~~~E~~~l~~m~~qkele~~r~k 271 (408)
+-|+-.|+.+..|.|-+ |++++.+-+|+..|--|.+
T Consensus 217 S~dr~re~GF~ldPd~L----------iaEvEaia~~~~IeRck~r 252 (362)
T PHA00451 217 SHDREREPGFPLDPDEL----------IAEVEAIANQRMIERCKNR 252 (362)
T ss_pred cCccccCCCCCCCHHHH----------HHHHHHHHHHHHHHHHHhh
Confidence 55556666677776643 5566666777766654444
No 82
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=26.01 E-value=25 Score=27.37 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=28.1
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHHHh
Q 015355 56 RKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLK 113 (408)
Q Consensus 56 ~~v~~~~el~~~~~ef~~~~~l~~~~~psmkels~hgr~dla~~vrrrgyk~i~~l~~ 113 (408)
.+|++|++|...|+.... -.++..|.|..||.|-.+=|.
T Consensus 9 ~~~~~d~~L~~~l~~~~~-------------------~e~~~~lA~~~Gf~ft~~el~ 47 (64)
T TIGR03798 9 EKVKTDPDLREKLKAAED-------------------PEDRVAIAKEAGFEFTGEDLK 47 (64)
T ss_pred HHHHcCHHHHHHHHHcCC-------------------HHHHHHHHHHcCCCCCHHHHH
Confidence 467888888887776321 356778889999999665544
No 83
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=25.82 E-value=48 Score=26.92 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHhhC
Q 015355 61 NEELYNDLREFLSTVG 76 (408)
Q Consensus 61 ~~el~~~~~ef~~~~~ 76 (408)
.+++..+||+|+|..|
T Consensus 4 re~i~~~iR~~fs~lG 19 (62)
T PF15513_consen 4 REEITAEIRQFFSQLG 19 (62)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4788899999999877
No 84
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=25.69 E-value=61 Score=27.21 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=42.6
Q ss_pred hhhhHHHHHhhhH--HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccc
Q 015355 250 QLEIDHLKFMLHQ--KEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISD 301 (408)
Q Consensus 250 ~~E~~~l~~m~~q--kele~~r~k~qie~~K~~lsvlq~k~~~ei~~AqkLl~e 301 (408)
+-+-+++..|-.. .+-++.+..+-+++|+.++--.+.+...++.+-+.+|.+
T Consensus 24 ~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~ 77 (90)
T PF02970_consen 24 EEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEE 77 (90)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666665 888899999999999999999999999999988888753
No 85
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=25.54 E-value=84 Score=28.93 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHhhCCCCCC-CCChHHHhhhc
Q 015355 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (408)
Q Consensus 61 ~~el~~~~~ef~~~~~l~~~~-~psmkels~hg 92 (408)
-+.+.++|++-+.+=.+|.|. +||..||.++=
T Consensus 10 y~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~~ 42 (238)
T TIGR02325 10 WRQIADKIEQEIAAGHLRAGDYLPAEMQLAERF 42 (238)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 478889999999988888776 99999999863
No 86
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=25.52 E-value=84 Score=29.12 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhCCCCCC-CCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCC---CCCCCccccc
Q 015355 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAE 126 (408)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~~-~psmkels~hgr~dla~~vrrrgyk~i~~l~~~~~---~~~~~~~~~e 126 (408)
.++.++|++-+.+=.++.|. +||..||.++=- ...+.=|+ -|.+|....- ..|.+-||.+
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~~g--VSR~TVR~---Al~~L~~eGli~r~~G~GTfV~~ 66 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQYG--ASRETVRK---ALNLLTEAGYIQKIQGKGSIVLN 66 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHC--CCHHHHHH---HHHHHHHCCCEEEeCCceEEEec
Confidence 46889999999998888886 999999998632 22222232 3455554432 4455556643
No 87
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.89 E-value=65 Score=35.73 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=22.9
Q ss_pred eCCceEEEEEEEcCEee---eCCCCCeecC
Q 015355 371 LYPGTYEIKFIVDGQWK---VDPQRESVTK 397 (408)
Q Consensus 371 LPPGrYEYKFIVDGeW~---~DPd~PtvtD 397 (408)
-+.|.|++||-++|+|+ +|...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 46799999999999994 4889998774
No 88
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.72 E-value=51 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.6
Q ss_pred cchhHHHHHHhhhHHHH
Q 015355 92 GRDDLANIVRRRGYKFI 108 (408)
Q Consensus 92 gr~dla~~vrrrgyk~i 108 (408)
-..++..|.|..||.|=
T Consensus 28 ~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 34577889999999884
No 89
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=24.51 E-value=1.3e+02 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=24.0
Q ss_pred CCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCe
Q 015355 362 SRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 394 (408)
Q Consensus 362 ~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Pt 394 (408)
.|.=++.+.|+||+|....+. |.+.+-|..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 455567889999999999887 55666665554
No 90
>PRK10785 maltodextrin glucosidase; Provisional
Probab=24.33 E-value=2.8e+02 Score=30.32 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=33.8
Q ss_pred CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeC--CceEEEEEEE--cCE
Q 015355 327 GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 385 (408)
Q Consensus 327 AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LP--PGrYEYKFIV--DGe 385 (408)
...|.|.=..++-...++|.+... +.....|++++.++ ++++.|.|.+ +|+
T Consensus 33 ~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 33 PQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred eEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 467888655555444578887521 11224699999885 7888898888 554
No 91
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=23.11 E-value=75 Score=23.54 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=13.1
Q ss_pred EEeCCceEEEEEEE---cCEeeeCC
Q 015355 369 LWLYPGTYEIKFIV---DGQWKVDP 390 (408)
Q Consensus 369 L~LPPGrYEYKFIV---DGeW~~DP 390 (408)
..||||.|.++-.+ +|.|..++
T Consensus 34 ~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 34 TNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp ES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EeCCCEEEEEEEEEECCCCCcCccc
Confidence 47999999988765 57887764
No 92
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=22.11 E-value=1.3e+02 Score=33.83 Aligned_cols=64 Identities=31% Similarity=0.365 Sum_probs=51.8
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccccccchHHHHHHHhhcC
Q 015355 251 LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLS 314 (408)
Q Consensus 251 ~E~~~l~~m~~qkele~~r~k~qie~~K~~lsvlq~k~~~ei~~AqkLl~eK~~~LdaAe~aLs 314 (408)
-+|+.+.+.|-||+-++.+|-..|+..+++++-+..+....|+.-.+.+..|...+..-+..|+
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888899999999999999999999999988888888888888888777765554444433
No 93
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=21.97 E-value=75 Score=25.70 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=32.4
Q ss_pred CCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCCCCCCCc
Q 015355 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNG 122 (408)
Q Consensus 77 l~~~~~psmkels~hgr~dla~~vrrrgyk~i~~l~~~~~~~~~~~ 122 (408)
+|.-|++++.+|++--+.+|+.+.+.- -++.+.+- ....+.|=
T Consensus 40 iPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~--~~~~~~n~ 82 (104)
T cd01276 40 IPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLG--IAEDGYRL 82 (104)
T ss_pred EecceeCChHHcccccHHHHHHHHHHH-HHHHHHhC--CCCCCEEE
Confidence 688899999999999999999998876 56666652 12445553
No 94
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=21.31 E-value=58 Score=27.99 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=28.3
Q ss_pred HHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHhhhHH
Q 015355 68 LREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (408)
Q Consensus 68 ~~ef~~~~~l~~~~~psmkels~hgr~dla~~vrrrgyk 106 (408)
-|.+|.. ..-+-|+|+|+..++..+.+..+++|+|
T Consensus 6 YR~~L~~----~~Gk~S~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 6 YRALLQR----VTGKSSSKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred HHHHHHH----HhChhhHHHCCHHHHHHHHHHHHHccCc
Confidence 3555655 2346799999999999999999999995
No 95
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=20.90 E-value=1.1e+02 Score=30.54 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.2
Q ss_pred eCCceEEEEEEEcCEeee---CCCCCeec
Q 015355 371 LYPGTYEIKFIVDGQWKV---DPQRESVT 396 (408)
Q Consensus 371 LPPGrYEYKFIVDGeW~~---DPd~Ptvt 396 (408)
-+.|.|.++|.++|.|+. |+.-|...
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~~ 126 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTYN 126 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeeeC
Confidence 457999999999999954 88888754
No 96
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=20.50 E-value=50 Score=28.03 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=28.4
Q ss_pred CCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHHH
Q 015355 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLL 112 (408)
Q Consensus 77 l~~~~~psmkels~hgr~dla~~vrrrgyk~i~~l~ 112 (408)
+|-.|++++.+|++.-+.+|+.++++-. +.++.++
T Consensus 40 iPk~H~~~~~~L~~~e~~~l~~~~~~v~-~~l~~~~ 74 (126)
T cd01275 40 VPYRHVPRLEDLTPEEIADLFKLVQLAM-KALKVVY 74 (126)
T ss_pred EeccccCChhhCCHHHHHHHHHHHHHHH-HHHHHhc
Confidence 5888999999999999999999997754 3444444
No 97
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=20.24 E-value=1.6e+02 Score=21.11 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCCCCC-CCChHHHhhhcch
Q 015355 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRD 94 (408)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~~-~psmkels~hgr~ 94 (408)
.+++.+|+.++....++.|. +|+.++|+.|=..
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~~i 37 (66)
T cd07377 4 EQIADQLREAILSGELKPGDRLPSERELAEELGV 37 (66)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCC
Confidence 57899999999888876665 5778888876443
No 98
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=20.09 E-value=2.3e+02 Score=25.91 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhCCCCCC-CCChHHHhhhcch
Q 015355 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRD 94 (408)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~~-~psmkels~hgr~ 94 (408)
+++.++|++-+..-+++.|. +||.+||.+.=.+
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~lPsE~eLa~~~~V 37 (231)
T TIGR03337 4 LYIKDHLSYQIRAGALLPGDKLPSERDLGERFNT 37 (231)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCC
Confidence 56889999999999998775 9999999987444
Done!