BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015356
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VK0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g06450
 pdb|1VK0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g06450
 pdb|1VK0|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g06450
 pdb|1VK0|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g06450
 pdb|1VK0|E Chain E, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g06450
 pdb|1VK0|F Chain F, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At5g06450
 pdb|2Q3S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g06450
 pdb|2Q3S|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g06450
 pdb|2Q3S|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g06450
 pdb|2Q3S|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g06450
 pdb|2Q3S|E Chain E, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g06450
 pdb|2Q3S|F Chain F, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At5g06450
          Length = 206

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 221 LTVFCPLDDPFKAFLPKFKNLSAADKTSFLEFLGVPVYQSLSMLKSNNGLLNTLATDGGK 280
           L +F  L  PF   L   K+L     + F+ F+GV + + L +L+ N+GL+   A + GK
Sbjct: 83  LCLFLRLPKPFHDNL---KDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGK 139


>pdb|1U5T|A Chain A, Structure Of The Escrt-Ii Endosomal Trafficking Complex
 pdb|1W7P|A Chain A, The Crystal Structure Of Endosomal Complex Escrt-Ii
           (Vps22VPS25VPS36)
          Length = 233

 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 232 KAFLPKFKNLSAADKTSFLEFLGVPVYQSLSMLKSNNGL 270
           K FL    N   +D+T  LE   +  Y S+S+LK+N G 
Sbjct: 155 KKFLRSVPNELTSDQTKILEICSILGYSSISLLKANLGW 193


>pdb|1TVG|A Chain A, X-Ray Structure Of Human Pp25 Gene Product, Hspc034.
           Northeast Structural Genomics Target Hr1958.
 pdb|1XPW|A Chain A, Solution Nmr Structure Of Human Protein Hspco34. Northeast
           Structural Genomics Target Hr1958
          Length = 153

 Score = 28.1 bits (61), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 280 KKFDLTVQDEGEEVTLKTKVNSVKITGTLIDEQPVAMYTTDKVLMPKEL 328
           +K DL +  EG EV L T  +       +ID  P   +TT   + P+E 
Sbjct: 12  RKIDLCLSSEGSEVILATSSDEKHPPENIIDGNPETFWTTTG-MFPQEF 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,496,039
Number of Sequences: 62578
Number of extensions: 356373
Number of successful extensions: 836
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 5
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)