Query 015356
Match_columns 408
No_of_seqs 238 out of 1341
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 2E-22 4.2E-27 182.4 10.5 131 185-328 48-184 (187)
2 PF02469 Fasciclin: Fasciclin 99.8 5.5E-19 1.2E-23 151.7 8.1 122 195-325 2-128 (128)
3 KOG1437 Fasciclin and related 99.8 1.4E-17 3E-22 176.8 16.2 269 22-332 373-648 (682)
4 smart00554 FAS1 Four repeated 99.7 4.9E-18 1.1E-22 139.9 6.2 95 222-326 1-99 (99)
5 COG2335 Secreted and surface p 99.7 3.5E-17 7.6E-22 148.3 8.4 131 21-174 46-183 (187)
6 PF02469 Fasciclin: Fasciclin 99.6 6.4E-15 1.4E-19 126.4 7.1 121 33-172 1-128 (128)
7 KOG1437 Fasciclin and related 99.4 5.1E-13 1.1E-17 142.2 11.2 148 159-325 357-507 (682)
8 smart00554 FAS1 Four repeated 99.2 1.2E-11 2.6E-16 101.7 4.8 93 58-173 1-99 (99)
9 TIGR02544 III_secr_YscJ type I 47.3 13 0.00028 34.6 2.1 64 5-69 2-67 (193)
10 PRK15348 type III secretion sy 44.8 21 0.00046 34.6 3.2 55 12-69 12-67 (249)
11 PRK15324 type III secretion sy 40.3 28 0.0006 33.9 3.2 46 23-69 21-68 (252)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=2e-22 Score=182.37 Aligned_cols=131 Identities=22% Similarity=0.278 Sum_probs=110.9
Q ss_pred cCHHHHHhhcC-hhHHHHHHHHhcCchhHhhccCCCCeEEEccCCHHHhhhh-hhhhcC----CHHHHHhhccccccccc
Q 015356 185 LNLTGIMSAHG-CKQFADALLANADASKTYQDAAIGGLTVFCPLDDPFKAFL-PKFKNL----SAADKTSFLEFLGVPVY 258 (408)
Q Consensus 185 ~nit~~L~~~~-~stf~~~ll~~tgl~~~l~~~~~~~~TVFAPtD~AF~~l~-~~l~~l----~~~~l~~lL~yHVv~~~ 258 (408)
.+|.+.....+ |++|.. +++.++|.++|++. |+||||||||+||.+++ .++..| ++.+|+.+|.|||+++.
T Consensus 48 ~~iV~~a~~~~~f~tl~~-a~~aa~Lv~~L~~~--gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk 124 (187)
T COG2335 48 ADIVESAANNPSFTTLVA-ALKAAGLVDTLNET--GPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGK 124 (187)
T ss_pred hHHHHHHccCcchHHHHH-HHHhhhhHHHhcCC--CCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCc
Confidence 46777665666 999999 99999999999998 99999999999999994 455554 56789999999999999
Q ss_pred cchhhhhcCCccceeeeccCCceeEEEEEecCCeEEEeecceeeEEEeeecccCCeEEEEeCccCCCCcC
Q 015356 259 QSLSMLKSNNGLLNTLATDGGKKFDLTVQDEGEEVTLKTKVNSVKITGTLIDEQPVAMYTTDKVLMPKEL 328 (408)
Q Consensus 259 ~~~~~l~~~~~~v~Tla~~~~~~~~l~v~~~g~~v~v~tg~~~a~V~~t~~~~~~gvIh~ID~VL~P~~l 328 (408)
+..++++. .+.+.|+.|. .++|...++.+.|+ .++|+..++..+||+||+||+||+|+..
T Consensus 125 ~~~~~l~~-~~~v~t~~G~-----~~~i~~~~~~~~Vn----~a~v~~~di~a~NgvIhvID~Vl~Pp~~ 184 (187)
T COG2335 125 ITAADLKS-SGSVKTVQGA-----DLKIKVTGGGVYVN----DATVTIADINASNGVIHVIDKVLIPPMD 184 (187)
T ss_pred ccHHHhhc-cccceeecCc-----eEEEEEcCCcEEEe----eeEEEeccEeccCcEEEEEeeeccCCCc
Confidence 99999974 4568888764 67777766668774 6889988999999999999999999875
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.77 E-value=5.5e-19 Score=151.71 Aligned_cols=122 Identities=24% Similarity=0.346 Sum_probs=90.6
Q ss_pred ChhHHHHHHHHhcCchhHh-hccCCCCeEEEccCCHHHhhhh-hhhhcC--CHHHHHhhccccccccccchhhhhcCCcc
Q 015356 195 GCKQFADALLANADASKTY-QDAAIGGLTVFCPLDDPFKAFL-PKFKNL--SAADKTSFLEFLGVPVYQSLSMLKSNNGL 270 (408)
Q Consensus 195 ~~stf~~~ll~~tgl~~~l-~~~~~~~~TVFAPtD~AF~~l~-~~l~~l--~~~~l~~lL~yHVv~~~~~~~~l~~~~~~ 270 (408)
+|++|.+ +++++|+.+.| ++. +.+|||||+|+||+++. ...+.+ ..+.++++|+||++++.++.+++......
T Consensus 2 ~~s~f~~-~l~~~~l~~~l~~~~--~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~~~ 78 (128)
T PF02469_consen 2 DLSTFSR-LLEQAGLADLLNDSD--GNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGKQT 78 (128)
T ss_dssp TTHHHHH-HHHHTTCHHHHGCSS--SSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHHEE
T ss_pred CHHHHHH-HHHHcCCHHHHhcCC--CCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccccc
Confidence 3899999 99999999999 454 89999999999999883 222222 66789999999999999999999743235
Q ss_pred cee-eeccCCceeEEEEEecCCeEEEeecceeeEEEeeecccCCeEEEEeCccCCC
Q 015356 271 LNT-LATDGGKKFDLTVQDEGEEVTLKTKVNSVKITGTLIDEQPVAMYTTDKVLMP 325 (408)
Q Consensus 271 v~T-la~~~~~~~~l~v~~~g~~v~v~tg~~~a~V~~t~~~~~~gvIh~ID~VL~P 325 (408)
++| +.+ ..+.++....++.+.|+. .++|+..++...||+||.||+||+|
T Consensus 79 ~~t~~~g---~~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 79 LETLLNG---QPLRVSSSPSNGTIYVNG---KARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEBSSTT---CEEEEEEEGGTTEEEECC---EEEESEEEEEESSEEEEEESS-TSS
T ss_pred ceeccCC---CEEEEEEEecCCceEecC---ceEEEeCCEEeCCEEEEEECceECc
Confidence 676 333 233444442377888853 5889888888899999999999998
No 3
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.75 E-value=1.4e-17 Score=176.76 Aligned_cols=269 Identities=17% Similarity=0.159 Sum_probs=178.0
Q ss_pred cccHHHHHccCCChHHHHHHHHhcchhhhhcCCCCeEEEEeCChhhhhhhcCCCCHHHHHHHHhhcccccccCccccccc
Q 015356 22 AHNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKHPSITTVKNVLSLHILLDYFGAKKLHQI 101 (408)
Q Consensus 22 a~nI~~~L~~~~~lStf~~lL~~t~L~~~l~~~~~iTVfAPtN~Af~~l~~~~~~~~~L~~lL~yHVl~~~~~~~~L~~l 101 (408)
..+++++..+ .+-|++.+++.+-++.+.|...+.+|+|+|.|.+|+++... +.+..+++||.||+++.|...+++.+
T Consensus 373 ~~~l~~La~e-~~~st~~rlv~elgll~~L~~n~e~t~~lp~n~~fd~~~~~-~~r~l~~qIL~~HII~~~~~~~~~y~- 449 (682)
T KOG1437|consen 373 LKNLMSLARE-DEISTSMRLVAELGLLTALAPNDEATLLLPTNNLFDDLTPL-ESRRLAEQILYNHIIPEYLTSSSMYN- 449 (682)
T ss_pred HHHHHHHHhc-ccccHHHHHHHhccceEEEcCCCceEEeeehhhhccCCChh-hhHHHHHHHHHHhCcchhhhhhhhhc-
Confidence 4567777655 47799999999999988887777799999999999986432 23555899999999999999988753
Q ss_pred cCCcccccccccccCCCCCCcceEEEEeCCCCeEEEcccCCCCcceeeEeeeeccccCcceeeeEeccccccccCCCCCC
Q 015356 102 TNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSSDVAEAPAPG 181 (408)
Q Consensus 102 ~~~~~~~~Tl~~~tg~a~~~~g~vnIt~~~~G~V~~~s~~~g~~~~at~v~~v~~~~~n~~V~~Id~vL~p~~~~ap~~~ 181 (408)
+.+.+.|+... -+.+......+......-..|+ . +.+..... ...||+||.||+|+.|.
T Consensus 450 --~~~~v~t~g~~--------~l~~fv~r~~~s~~~t~i~~~~-~-~~Ii~aDi-~~~nGvvH~id~vl~p~-------- 508 (682)
T KOG1437|consen 450 --GQTTVRTLGKN--------KLLYFVYRHSVSANVTDILIGN-E-ACIIEADI-SVKNGVVHIIDRVLDPV-------- 508 (682)
T ss_pred --ccceeeccCCe--------EEEEEEecccccccceeeeccc-e-eeEEeccc-ceecCceEEeeEEcCcc--------
Confidence 23334444211 1111111000111100000111 2 34433222 22589999999999982
Q ss_pred CCccCHHHHHhhcC-hhHHHHHHHHhcCchhHhhccCCCCeEEEccCCHHHhhhhhhhhcC-CHHHHHhhcccccccccc
Q 015356 182 PAELNLTGIMSAHG-CKQFADALLANADASKTYQDAAIGGLTVFCPLDDPFKAFLPKFKNL-SAADKTSFLEFLGVPVYQ 259 (408)
Q Consensus 182 p~~~nit~~L~~~~-~stf~~~ll~~tgl~~~l~~~~~~~~TVFAPtD~AF~~l~~~l~~l-~~~~l~~lL~yHVv~~~~ 259 (408)
++.+.|++.+ ++.|.+ +++..++-++++.. +.||+|+|||+||.+-......+ ....+.+++.||++++..
T Consensus 509 ----~l~~~l~~d~r~s~~~~-~le~~~l~e~l~~~--~~~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~l~yH~v~~~~ 581 (682)
T KOG1437|consen 509 ----SLMEDLKTDGRISGTVQ-GLEGVLLPEELTPE--GNYTLFVPTNKAWQKSTKDEKSLFHKKALQDFLKYHLVPGQS 581 (682)
T ss_pred ----cHHHHHhhccchhhhHH-hhhhcCChhhhccC--CceEEEeecccccccCCcchhhcchHHHHHHHHHhcccccee
Confidence 6788888888 999999 99999999999765 89999999999999874333223 345799999999999754
Q ss_pred chhhhhcCCccceeeeccCCceeEEEEEecCCeEEEee----c-ceeeEEEeeecccCCeEEEEeCccCCCCcCCCCC
Q 015356 260 SLSMLKSNNGLLNTLATDGGKKFDLTVQDEGEEVTLKT----K-VNSVKITGTLIDEQPVAMYTTDKVLMPKELFKAA 332 (408)
Q Consensus 260 ~~~~l~~~~~~v~Tla~~~~~~~~l~v~~~g~~v~v~t----g-~~~a~V~~t~~~~~~gvIh~ID~VL~P~~lf~~~ 332 (408)
. +.-...+ .++- .+.....++.+.+.. + ++..+++...+...||++|+||+||.|+.++...
T Consensus 582 ~---ls~~~~~-~v~~-------~~k~s~~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~l~~~n 648 (682)
T KOG1437|consen 582 R---LSLGSSP-YVMI-------QVKLSLRGDHLFFSLVNPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPDLPFLN 648 (682)
T ss_pred e---eeccccc-ceee-------eeeEEEecccEEeeeeccccceeeeeeeccceeeecceeEEEEEEcccCcchhhc
Confidence 3 1101111 1110 122233334333322 1 2445566666777799999999999999777654
No 4
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.73 E-value=4.9e-18 Score=139.92 Aligned_cols=95 Identities=32% Similarity=0.434 Sum_probs=77.4
Q ss_pred EEEccCCHHHhhhhh-hhhcCCHH-HHHhhccccccccccchhhhhcCCccceeeeccCCceeEEEEEecC--CeEEEee
Q 015356 222 TVFCPLDDPFKAFLP-KFKNLSAA-DKTSFLEFLGVPVYQSLSMLKSNNGLLNTLATDGGKKFDLTVQDEG--EEVTLKT 297 (408)
Q Consensus 222 TVFAPtD~AF~~l~~-~l~~l~~~-~l~~lL~yHVv~~~~~~~~l~~~~~~v~Tla~~~~~~~~l~v~~~g--~~v~v~t 297 (408)
|||||+|+||+++.. .++++..+ .++++|+|||++++++.++|.. ...++|+.|. .+.+.+.+ +.+.++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~-~~~~~Tl~g~-----~l~v~~~~~~~~i~in- 73 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAGS-----KLRVTRSGDSGTVTVN- 73 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc-CCccccCCCC-----EEEEEEeCCCCeEEEc-
Confidence 899999999999843 34555444 8999999999999999999974 4568888743 67777665 677774
Q ss_pred cceeeEEEeeecccCCeEEEEeCccCCCC
Q 015356 298 KVNSVKITGTLIDEQPVAMYTTDKVLMPK 326 (408)
Q Consensus 298 g~~~a~V~~t~~~~~~gvIh~ID~VL~P~ 326 (408)
+++|+..++..+||+||+||+||+|+
T Consensus 74 ---~~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 74 ---GARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred ---ceEEEECCEecCCeEEEEECceeCCC
Confidence 47899888899999999999999996
No 5
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=3.5e-17 Score=148.33 Aligned_cols=131 Identities=23% Similarity=0.248 Sum_probs=99.3
Q ss_pred CcccHHHHHccCCChHHHHHHHHhcchhhhhcCCCCeEEEEeCChhhhhhhcCC-------CCHHHHHHHHhhccccccc
Q 015356 21 QAHNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKH-------PSITTVKNVLSLHILLDYF 93 (408)
Q Consensus 21 ~a~nI~~~L~~~~~lStf~~lL~~t~L~~~l~~~~~iTVfAPtN~Af~~l~~~~-------~~~~~L~~lL~yHVl~~~~ 93 (408)
..++|.+...++++|++|..+++..+|.+.|++.|+||||||+|+||+.++... .++..|+.+|.|||+.|.+
T Consensus 46 ~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~ 125 (187)
T COG2335 46 NRADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKI 125 (187)
T ss_pred chhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcc
Confidence 346788887789999999999999999999999999999999999999997652 2788999999999999999
Q ss_pred CccccccccCCcccccccccccCCCCCCcceEEEEeCCCCeEEEcccCCCCcceeeEeeeeccccCcceeeeEecccccc
Q 015356 94 GAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSSD 173 (408)
Q Consensus 94 ~~~~L~~l~~~~~~~~Tl~~~tg~a~~~~g~vnIt~~~~G~V~~~s~~~g~~~~at~v~~v~~~~~n~~V~~Id~vL~p~ 173 (408)
..+++..... +.|+ .| ..++|...+ +++.++. ++++.... ...||+||.||+||+||
T Consensus 126 ~~~~l~~~~~----v~t~---~G------~~~~i~~~~-~~~~Vn~--------a~v~~~di-~a~NgvIhvID~Vl~Pp 182 (187)
T COG2335 126 TAADLKSSGS----VKTV---QG------ADLKIKVTG-GGVYVND--------ATVTIADI-NASNGVIHVIDKVLIPP 182 (187)
T ss_pred cHHHhhcccc----ceee---cC------ceEEEEEcC-CcEEEee--------eEEEeccE-eccCcEEEEEeeeccCC
Confidence 9999865221 3332 11 135555433 3466541 33333222 23699999999999997
Q ss_pred c
Q 015356 174 V 174 (408)
Q Consensus 174 ~ 174 (408)
.
T Consensus 183 ~ 183 (187)
T COG2335 183 M 183 (187)
T ss_pred C
Confidence 5
No 6
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.56 E-value=6.4e-15 Score=126.41 Aligned_cols=121 Identities=24% Similarity=0.289 Sum_probs=83.2
Q ss_pred CChHHHHHHHHhcchhhhh-cCCCCeEEEEeCChhhhhhhcCC-----CCHHHHHHHHhhcccccccCccccccccCCcc
Q 015356 33 PSFSTFNHYLSVTHLADEI-NRKTTITVCAIDNAGMSELLSKH-----PSITTVKNVLSLHILLDYFGAKKLHQITNGTA 106 (408)
Q Consensus 33 ~~lStf~~lL~~t~L~~~l-~~~~~iTVfAPtN~Af~~l~~~~-----~~~~~L~~lL~yHVl~~~~~~~~L~~l~~~~~ 106 (408)
|+||+|.++|+++|+.+.| +..+.+|||||+|+||+++.... -+.+.++++|+||++++.+..++|... .+
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~---~~ 77 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNG---KQ 77 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCH---HE
T ss_pred CCHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccc---cc
Confidence 7899999999999999999 67799999999999998874221 157889999999999999998887542 11
Q ss_pred cccccccccCCCCCCcceEEEEeC-CCCeEEEcccCCCCcceeeEeeeeccccCcceeeeEeccccc
Q 015356 107 LAATMFQATGSAPGSSGFVNITDL-KGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSS 172 (408)
Q Consensus 107 ~~~Tl~~~tg~a~~~~g~vnIt~~-~~G~V~~~s~~~g~~~~at~v~~v~~~~~n~~V~~Id~vL~p 172 (408)
.+.|+. . | ..+.++.. .+|.+.+.. .+++++... ...||.||.||+||.|
T Consensus 78 ~~~t~~--~----g--~~~~v~~~~~~~~~~v~~-------~a~i~~~~~-~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 78 TLETLL--N----G--QPLRVSSSPSNGTIYVNG-------KARIVKSDI-EASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEEBSS--T----T--CEEEEEEEGGTTEEEECC-------EEEESEEEE-EESSEEEEEESS-TSS
T ss_pred cceecc--C----C--CEEEEEEEecCCceEecC-------ceEEEeCCE-EeCCEEEEEECceECc
Confidence 233311 1 1 24556554 457777743 245553322 4469999999999987
No 7
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.43 E-value=5.1e-13 Score=142.23 Aligned_cols=148 Identities=19% Similarity=0.131 Sum_probs=112.3
Q ss_pred CcceeeeEeccccccccCCCCCCCCccCHHHHHhhcChhHHHHHHHHhcCchhHhhccCCCCeEEEccCCHHHhhhhhhh
Q 015356 159 YNISVIQISKVLSSDVAEAPAPGPAELNLTGIMSAHGCKQFADALLANADASKTYQDAAIGGLTVFCPLDDPFKAFLPKF 238 (408)
Q Consensus 159 ~n~~V~~Id~vL~p~~~~ap~~~p~~~nit~~L~~~~~stf~~~ll~~tgl~~~l~~~~~~~~TVFAPtD~AF~~l~~~l 238 (408)
.|++||.||.+|.|+. ..+++++..++.++++.+ ++.+-|+.+.|... +.+|+|+|+|++|+.+.+.+
T Consensus 357 ~~~~lh~id~~l~p~~---------~~~l~~La~e~~~st~~r-lv~elgll~~L~~n--~e~t~~lp~n~~fd~~~~~~ 424 (682)
T KOG1437|consen 357 TNGLLHYIDYVLEPDS---------LKNLMSLAREDEISTSMR-LVAELGLLTALAPN--DEATLLLPTNNLFDDLTPLE 424 (682)
T ss_pred cceEEEEcccccCCch---------HHHHHHHHhcccccHHHH-HHHhccceEEEcCC--CceEEeeehhhhccCCChhh
Confidence 4588999999999863 358999998888999999 99999999988665 56999999999999975421
Q ss_pred hcCCHHHHHhhccccccccccchhhhhcCCccceeeeccCCceeEEEEEecCCeE---EEeecceeeEEEeeecccCCeE
Q 015356 239 KNLSAADKTSFLEFLGVPVYQSLSMLKSNNGLLNTLATDGGKKFDLTVQDEGEEV---TLKTKVNSVKITGTLIDEQPVA 315 (408)
Q Consensus 239 ~~l~~~~l~~lL~yHVv~~~~~~~~l~~~~~~v~Tla~~~~~~~~l~v~~~g~~v---~v~tg~~~a~V~~t~~~~~~gv 315 (408)
.+..++.+|+||+++.+.+.++.......++|+.+ .++..-+.+.-+.. .+..|. .+.|...++...+|+
T Consensus 425 ---~r~l~~qIL~~HII~~~~~~~~~y~~~~~v~t~g~---~~l~~fv~r~~~s~~~t~i~~~~-~~~Ii~aDi~~~nGv 497 (682)
T KOG1437|consen 425 ---SRRLAEQILYNHIIPEYLTSSSMYNGQTTVRTLGK---NKLLYFVYRHSVSANVTDILIGN-EACIIEADISVKNGV 497 (682)
T ss_pred ---hHHHHHHHHHHhCcchhhhhhhhhcccceeeccCC---eEEEEEEecccccccceeeeccc-eeeEEecccceecCc
Confidence 22237899999999999998888755446777643 24444444432221 222222 378888888889999
Q ss_pred EEEeCccCCC
Q 015356 316 MYTTDKVLMP 325 (408)
Q Consensus 316 Ih~ID~VL~P 325 (408)
||.||+||-|
T Consensus 498 vH~id~vl~p 507 (682)
T KOG1437|consen 498 VHIIDRVLDP 507 (682)
T ss_pred eEEeeEEcCc
Confidence 9999999999
No 8
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.21 E-value=1.2e-11 Score=101.67 Aligned_cols=93 Identities=25% Similarity=0.268 Sum_probs=64.1
Q ss_pred EEEEeCChhhhhhhcC---CC--CHHHHHHHHhhcccccccCccccccccCCcccccccccccCCCCCCcceEEEEeCCC
Q 015356 58 TVCAIDNAGMSELLSK---HP--SITTVKNVLSLHILLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKG 132 (408)
Q Consensus 58 TVfAPtN~Af~~l~~~---~~--~~~~L~~lL~yHVl~~~~~~~~L~~l~~~~~~~~Tl~~~tg~a~~~~g~vnIt~~~~ 132 (408)
|||||+|+||+++... .+ +. .++++|+||++++++..++|.. + ..++|+. | ..+.++...+
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~-~l~~ll~~Hiv~~~~~~~~l~~---~-~~~~Tl~---g------~~l~v~~~~~ 66 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADP-KLKNLLLYHVVPGRLSSADLLN---G-GTLPTLA---G------SKLRVTRSGD 66 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCH-HHHHHHHhcEeCceEcHHHhcc---C-CccccCC---C------CEEEEEEeCC
Confidence 8999999999998653 11 23 8999999999999999998854 1 3355552 1 2366665443
Q ss_pred -CeEEEcccCCCCcceeeEeeeeccccCcceeeeEecccccc
Q 015356 133 -GKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSSD 173 (408)
Q Consensus 133 -G~V~~~s~~~g~~~~at~v~~v~~~~~n~~V~~Id~vL~p~ 173 (408)
+.+.++ + +.+++... ...||+||.||+||.|+
T Consensus 67 ~~~i~in----~----~~v~~~di-~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 67 SGTVTVN----G----ARIVEADI-AATNGVVHVIDRVLLPP 99 (99)
T ss_pred CCeEEEc----c----eEEEECCE-ecCCeEEEEECceeCCC
Confidence 556653 2 24444322 23589999999999885
No 9
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=47.35 E-value=13 Score=34.61 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhccCcccHHHHHccCCChHHHHHHHHhcchhhhhc--CCCCeEEEEeCChhhhh
Q 015356 5 KTAFLLFSLLLLVSAAQAHNITRILAGHPSFSTFNHYLSVTHLADEIN--RKTTITVCAIDNAGMSE 69 (408)
Q Consensus 5 ~~~~~~~~~~~~~~~~~a~nI~~~L~~~~~lStf~~lL~~t~L~~~l~--~~~~iTVfAPtN~Af~~ 69 (408)
++.+++++++++.+.+.-.-++.=|.. .+-+.....|.+.|+..++. +.++.||++|.++.-+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~Ly~~L~~-~da~~I~~~L~~~gI~y~~~~~~~~g~~I~Vp~~~~~~a 67 (193)
T TIGR02544 2 RRKLLLLLLLLLLTGCKVDLLYSGLSE-REANEMLAVLMRHGIDAEKEGSGKGGYTISVEESDFARA 67 (193)
T ss_pred chhHHHHHHHHHhcCCCceecccCCCH-HHHHHHHHHHHHCCCCeEEeecCCCCeEEEEcHHHHHHH
Confidence 344444444445444444444555543 46778889999999988883 34679999999887664
No 10
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=44.81 E-value=21 Score=34.62 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=36.9
Q ss_pred HHHHhhhccCcccHHHHHccCCChHHHHHHHHhcchhhhhc-CCCCeEEEEeCChhhhh
Q 015356 12 SLLLLVSAAQAHNITRILAGHPSFSTFNHYLSVTHLADEIN-RKTTITVCAIDNAGMSE 69 (408)
Q Consensus 12 ~~~~~~~~~~a~nI~~~L~~~~~lStf~~lL~~t~L~~~l~-~~~~iTVfAPtN~Af~~ 69 (408)
+++++++| . ..++.-|.. .+-......|.+.|+..+.. +.++.||.+|.++.-+.
T Consensus 12 ~~~~l~gC-~-~~LysgL~~-~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~~~A 67 (249)
T PRK15348 12 LTFFLTAC-D-VDLYRSLPE-DEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINA 67 (249)
T ss_pred HHHHHhcC-C-hHHHcCCCH-HHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHHHHH
Confidence 33444444 2 235554543 46788888999999887653 45779999999887653
No 11
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=40.27 E-value=28 Score=33.89 Aligned_cols=46 Identities=4% Similarity=0.009 Sum_probs=34.5
Q ss_pred ccHHHHHccCCChHHHHHHHHhcchhhhhcCC--CCeEEEEeCChhhhh
Q 015356 23 HNITRILAGHPSFSTFNHYLSVTHLADEINRK--TTITVCAIDNAGMSE 69 (408)
Q Consensus 23 ~nI~~~L~~~~~lStf~~lL~~t~L~~~l~~~--~~iTVfAPtN~Af~~ 69 (408)
..++.-|.. .+-.+....|.+.|+..++... ++.||.+|.++.-++
T Consensus 21 ~~Lys~L~~-~dAneIv~~L~~~gI~y~~~~~gk~G~tI~V~~~d~~~A 68 (252)
T PRK15324 21 KDLLKGLDQ-EQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 (252)
T ss_pred ehhhcCCCH-HHHHHHHHHHHHCCCCeEeccCCCCceEEEEcHHHHHHH
Confidence 356666654 4678888999999998877543 379999998876654
Done!