Query 015356
Match_columns 408
No_of_seqs 238 out of 1341
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o70_A Fasciclin I, FAS I, FCN 100.0 6.9E-44 2.4E-48 353.0 16.9 285 20-331 3-315 (324)
2 1w7d_A Fasciclin-like protein; 99.9 8.2E-26 2.8E-30 197.0 5.3 129 185-327 3-137 (137)
3 2vxp_A Transforming growth fac 99.9 1.8E-24 6.2E-29 187.4 11.1 127 185-324 2-132 (132)
4 1nyo_A Immunogenic protein MPT 99.9 1E-24 3.4E-29 195.8 7.1 128 184-327 27-163 (163)
5 1o70_A Fasciclin I, FAS I, FCN 99.8 1.5E-20 5E-25 185.7 11.3 138 184-327 5-158 (324)
6 1w7d_A Fasciclin-like protein; 99.8 3.7E-20 1.3E-24 161.2 4.7 128 22-173 2-136 (137)
7 2vxp_A Transforming growth fac 99.8 2.7E-19 9.3E-24 154.7 9.9 126 23-171 2-132 (132)
8 1nyo_A Immunogenic protein MPT 99.8 9.8E-19 3.3E-23 156.8 8.4 127 21-173 26-162 (163)
9 2p5k_A Arginine repressor; DNA 9.7 4.3E+02 0.015 17.6 4.7 58 1-59 1-61 (64)
10 3uw0_A Pectinesterase; right-h 6.6 1.8E+02 0.0062 28.3 1.7 28 31-63 40-67 (364)
No 1
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=100.00 E-value=6.9e-44 Score=352.99 Aligned_cols=285 Identities=16% Similarity=0.162 Sum_probs=210.8
Q ss_pred cCcccHHHHHc------cCCChHHHHHHHHhcc--hhhhhcCCCCeEEEEeCChhhhhhhcCC--CCHHHHHHHHhhccc
Q 015356 20 AQAHNITRILA------GHPSFSTFNHYLSVTH--LADEINRKTTITVCAIDNAGMSELLSKH--PSITTVKNVLSLHIL 89 (408)
Q Consensus 20 ~~a~nI~~~L~------~~~~lStf~~lL~~t~--L~~~l~~~~~iTVfAPtN~Af~~l~~~~--~~~~~L~~lL~yHVl 89 (408)
+...||+++|+ ++++||+|.++|+++| |.++|++.++||||||+|+||.++..+. .+.+.|+++|+|||+
T Consensus 3 ~~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv 82 (324)
T 1o70_A 3 AADTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHII 82 (324)
T ss_dssp ----------------CCHHHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEE
T ss_pred eehhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEe
Confidence 45789999998 6889999999999999 9999999999999999999998763221 268899999999999
Q ss_pred ccccCccccccccCC-cccccccccccCCCCCCcceEEEEeC-CCCeEEEcccCCCCcceeeEeeeeccccCcceeeeEe
Q 015356 90 LDYFGAKKLHQITNG-TALAATMFQATGSAPGSSGFVNITDL-KGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQIS 167 (408)
Q Consensus 90 ~~~~~~~~L~~l~~~-~~~~~Tl~~~tg~a~~~~g~vnIt~~-~~G~V~~~s~~~g~~~~at~v~~v~~~~~n~~V~~Id 167 (408)
+++|..++|+....+ ...++|+.+.. ..+++++.. .++.+.+.. +...+++++... ...||+||.||
T Consensus 83 ~g~~~~~~l~~~~~~~~~~~~Tl~g~~------~l~~~v~~~~~~~~v~v~~----g~~~a~v~~~di-~~~NGvIhvID 151 (324)
T 1o70_A 83 KDRLNVDKIRQKNANLIAQVPTVNNNT------FLYFNVRGEGSDTVITVEG----GGVNATVIQADV-AQTNGYVHIID 151 (324)
T ss_dssp SSCCCHHHHHHHTSSSCCCEEBSSTTC------EEEEEEESCGGGCEEEEEE----TTEEEEEEEEEE-ECSSEEEEEES
T ss_pred CCeecHHHHhhccCCCceEEEcCCCCc------eEEEEEeecCCceEEEEcC----CceeEEEEeccc-cccCcEEEEEc
Confidence 999999998765422 22456664321 124555531 124566532 233466665422 34699999999
Q ss_pred ccccccccCCCCCCCCccCHHHHHhhcC-hhHHHHHHHHhcCchhHhhccCCCCeEEEccCCHHHhhhh----h-hhhcC
Q 015356 168 KVLSSDVAEAPAPGPAELNLTGIMSAHG-CKQFADALLANADASKTYQDAAIGGLTVFCPLDDPFKAFL----P-KFKNL 241 (408)
Q Consensus 168 ~vL~p~~~~ap~~~p~~~nit~~L~~~~-~stf~~~ll~~tgl~~~l~~~~~~~~TVFAPtD~AF~~l~----~-~l~~l 241 (408)
+||.||. .++.++|++.+ |++|.. +++.+|+.++|++. .++||||||+|+||+++. . .++.+
T Consensus 152 ~VL~pp~----------~ti~~~l~~~~~fs~~~~-~l~~~gl~~~L~~~-~~~~TvFAPtd~Af~~l~~~~~~~~~~~l 219 (324)
T 1o70_A 152 HVLGVPY----------TTVLGKLESDPMMSDTYK-MGKFSHFNDQLNNT-QRRFTYFVPRDKGWQKTELDYPSAHKKLF 219 (324)
T ss_dssp SCTTSCC----------SCHHHHHHHCGGGHHHHH-HTTTTTTTGGGGCS-SSEEEEEEECHHHHHHHHHHCHHHHHHHT
T ss_pred hhhhhch----------hhHHHHhhcCchHHHHHH-HHHhhCHHHHhCCC-CCCeEEEEeChHHHHhhhhhchhHHHHHh
Confidence 9999862 47999999887 999999 99999999999842 279999999999999984 2 23344
Q ss_pred CH---HHHHhhcccccccc--ccchhhhhcCCc-----cceeeeccCCceeEEEEEecCCeEEEeecceeeEEEeeeccc
Q 015356 242 SA---ADKTSFLEFLGVPV--YQSLSMLKSNNG-----LLNTLATDGGKKFDLTVQDEGEEVTLKTKVNSVKITGTLIDE 311 (408)
Q Consensus 242 ~~---~~l~~lL~yHVv~~--~~~~~~l~~~~~-----~v~Tla~~~~~~~~l~v~~~g~~v~v~tg~~~a~V~~t~~~~ 311 (408)
.. ++++++|+|||+++ +|+.++|....+ .++|+. +++.+++...|+.+.|+.+.++++|+..++..
T Consensus 220 ~~~~~~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~----~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~ 295 (324)
T 1o70_A 220 MADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFR----DSLSIRVEEEAGRYVIIWNYKKINVYRPDVEC 295 (324)
T ss_dssp SGGGHHHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEEECSS----SEEEEEEEEETTEEEEEETTEEEEEEEEEEEE
T ss_pred ccCcHHHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeeeeccC----CcEEEEEEecCCEEEEEecCceeEEEEccccc
Confidence 33 58999999999998 999888875322 377775 24566666678899998766789999888899
Q ss_pred CCeEEEEeCccCCCCcCCCC
Q 015356 312 QPVAMYTTDKVLMPKELFKA 331 (408)
Q Consensus 312 ~~gvIh~ID~VL~P~~lf~~ 331 (408)
.||+||+||+||+|++....
T Consensus 296 ~NGvIHvID~VL~P~~~~~~ 315 (324)
T 1o70_A 296 TNGIIHVIDYPLLEEKDVVV 315 (324)
T ss_dssp TTEEEEEESSCSCCTTTTC-
T ss_pred CCCeEEEeceeecCCccccc
Confidence 99999999999999986544
No 2
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.92 E-value=8.2e-26 Score=197.01 Aligned_cols=129 Identities=25% Similarity=0.285 Sum_probs=110.6
Q ss_pred cCHHHHHhhcC-hhHHHHHHHHhcCchhHhhccCCCCeEEEccCCHHHhhhhh-hhhcC----CHHHHHhhccccccccc
Q 015356 185 LNLTGIMSAHG-CKQFADALLANADASKTYQDAAIGGLTVFCPLDDPFKAFLP-KFKNL----SAADKTSFLEFLGVPVY 258 (408)
Q Consensus 185 ~nit~~L~~~~-~stf~~~ll~~tgl~~~l~~~~~~~~TVFAPtD~AF~~l~~-~l~~l----~~~~l~~lL~yHVv~~~ 258 (408)
.||.++|++.+ |++|.+ +++++|+.+.|++. ++||||||+|+||+++.. .++.+ +.+.++++|+|||++++
T Consensus 3 ~~i~~~l~~~~~~s~f~~-~l~~agl~~~L~~~--~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~ 79 (137)
T 1w7d_A 3 GDIVETATGAGSFTTLLT-AAEAAGLVDTLKGD--GPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGE 79 (137)
T ss_dssp STTGGGGGSCSSSTTTTH-HHHHTTTHHHHTSS--SCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESC
T ss_pred CCHHHHHHhCCCHHHHHH-HHHHcCCHHHHcCC--CCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcE
Confidence 58999998877 999999 99999999999987 899999999999999943 56666 56789999999999999
Q ss_pred cchhhhhcCCccceeeeccCCceeEEEEEecCCeEEEeecceeeEEEeeecccCCeEEEEeCccCCCCc
Q 015356 259 QSLSMLKSNNGLLNTLATDGGKKFDLTVQDEGEEVTLKTKVNSVKITGTLIDEQPVAMYTTDKVLMPKE 327 (408)
Q Consensus 259 ~~~~~l~~~~~~v~Tla~~~~~~~~l~v~~~g~~v~v~tg~~~a~V~~t~~~~~~gvIh~ID~VL~P~~ 327 (408)
++.++|.. ...++|+.|. .++|+..++ ++|+ +++|+..++...||+||+||+||+|+.
T Consensus 80 ~~~~~l~~-~~~~~tl~G~-----~l~v~~~~g-v~vn----~a~v~~~di~~~NGvIHvID~VL~P~s 137 (137)
T 1w7d_A 80 VMSSDLTE-GMTAETVEGG-----ALTVTLEGG-PKVN----GVSISQPDVDASNGVIHVIDGVLMPGA 137 (137)
T ss_dssp CCTTTSCS-SEEEECTTSC-----EEEEECTTS-CEET----TEECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred EcHHHhcC-CCeeeccCCc-----eEEEEecCC-EEEe----CcEEEECCeecCCeEEEEECeeeCCCC
Confidence 99889874 2357777653 688888877 8874 488988889999999999999999973
No 3
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.91 E-value=1.8e-24 Score=187.36 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=107.2
Q ss_pred cCHHHHHhhcC-hhHHHHHHHHhcCchhHhhccCCCCeEEEccCCHHHhhhhh-hhhcC--CHHHHHhhccccccccccc
Q 015356 185 LNLTGIMSAHG-CKQFADALLANADASKTYQDAAIGGLTVFCPLDDPFKAFLP-KFKNL--SAADKTSFLEFLGVPVYQS 260 (408)
Q Consensus 185 ~nit~~L~~~~-~stf~~~ll~~tgl~~~l~~~~~~~~TVFAPtD~AF~~l~~-~l~~l--~~~~l~~lL~yHVv~~~~~ 260 (408)
.+|.++|++.+ |++|.+ +++++|+.+.|++. ++||||||+|+||+++.+ .++.+ +.++++++|+|||+++.++
T Consensus 2 ~ti~~~l~~~~~fs~~~~-~l~~agl~~~L~~~--~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~ 78 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVA-AIQSAGLTETLNRE--GVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILV 78 (132)
T ss_dssp CCHHHHHTTSTTCHHHHH-HHHHHTCHHHHHSS--CCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCC
T ss_pred ccHHHHHHcCCCHHHHHH-HHHHcCcHHHHcCC--CCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceee
Confidence 37999999887 999999 99999999999986 899999999999999943 44444 6789999999999999888
Q ss_pred hhhhhcCCccceeeeccCCceeEEEEEecCCeEEEeecceeeEEEeeecccCCeEEEEeCccCC
Q 015356 261 LSMLKSNNGLLNTLATDGGKKFDLTVQDEGEEVTLKTKVNSVKITGTLIDEQPVAMYTTDKVLM 324 (408)
Q Consensus 261 ~~~l~~~~~~v~Tla~~~~~~~~l~v~~~g~~v~v~tg~~~a~V~~t~~~~~~gvIh~ID~VL~ 324 (408)
.+++.. ...++|+.|. .++|+..|+.++|+ +++|+..++...||+||+||+||+
T Consensus 79 ~~~l~~-~~~~~tl~G~-----~l~v~~~~~~v~vn----~a~v~~~di~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 79 SGGIGA-LVRLKSLQGD-----KLEVSLKNNVVSVN----KEPVAEPDIMATNGVVHVITNVLQ 132 (132)
T ss_dssp STTCSS-CEEEEBTTSS-----EEEEEEETTEEEES----SCBEEEEEEEETTEEEEEESSCC-
T ss_pred hhhccC-CceEecCCCC-----EEEEEEeCCEEEEe----ccEEEEcceecCCEEEEEECcEeC
Confidence 777753 3457787653 68888888888884 488998888899999999999996
No 4
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.90 E-value=1e-24 Score=195.83 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=110.7
Q ss_pred ccCHHHHHhhcC-hhHHHHHHHH-----hcCchhHhhccCCCCeEEEccCCHHHhhhh-hhhhcC--CHHHHHhhccccc
Q 015356 184 ELNLTGIMSAHG-CKQFADALLA-----NADASKTYQDAAIGGLTVFCPLDDPFKAFL-PKFKNL--SAADKTSFLEFLG 254 (408)
Q Consensus 184 ~~nit~~L~~~~-~stf~~~ll~-----~tgl~~~l~~~~~~~~TVFAPtD~AF~~l~-~~l~~l--~~~~l~~lL~yHV 254 (408)
..+|.++|++.+ |++|.+ +++ ++|+.+.|++. + ||||||+|+||+++. ..++.| +.++++++|+|||
T Consensus 27 ~~~i~~~l~~~~~~s~f~~-~l~~~~~~~agl~~~L~~~--g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHv 102 (163)
T 1nyo_A 27 QDPVAVAASNNPELTTLTA-ALSGQLNPQVNLVDTLNSG--Q-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHV 102 (163)
T ss_dssp HSCHHHHHTTSTTTHHHHH-HHHSSSCTTCCCHHHHTSS--S-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTE
T ss_pred CcCHHHHHHhCCCHHHHHH-HHHhccccccCHHHHhCCC--C-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhce
Confidence 468999999887 999999 999 99999999986 6 999999999999994 356555 4578999999999
Q ss_pred cccccchhhhhcCCccceeeeccCCceeEEEEEecCCeEEEeecceeeEEEeeecccCCeEEEEeCccCCCCc
Q 015356 255 VPVYQSLSMLKSNNGLLNTLATDGGKKFDLTVQDEGEEVTLKTKVNSVKITGTLIDEQPVAMYTTDKVLMPKE 327 (408)
Q Consensus 255 v~~~~~~~~l~~~~~~v~Tla~~~~~~~~l~v~~~g~~v~v~tg~~~a~V~~t~~~~~~gvIh~ID~VL~P~~ 327 (408)
++++++.++|. +.++|+.+. .|+|+..++.++|+ +++|+..++...||+||+||+||+|+.
T Consensus 103 v~g~~~~~~l~---g~~~Tl~G~-----~l~v~~~~~~v~vn----~a~V~~~di~a~NGvIHvID~VL~P~~ 163 (163)
T 1nyo_A 103 VAGQTSPANVV---GTRQTLQGA-----SVTVTGQGNSLKVG----NADVVCGGVSTANATVYMIDSVLMPPA 163 (163)
T ss_dssp EESCCCTTTSC---EEEECTTSS-----EEEEEECSSCEEET----TEECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred ECCEEcHHHhC---CccccCCCC-----EEEEEEECCEEEEe----ccEEEECceEcCCEEEEEECcEeCCCC
Confidence 99999988885 578888643 68888888888884 488988889999999999999999973
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.83 E-value=1.5e-20 Score=185.68 Aligned_cols=138 Identities=10% Similarity=0.174 Sum_probs=103.7
Q ss_pred ccCHHHHHh------hcC-hhHHHHHHHHhcC--chhHhhccCCCCeEEEccCCHHHhhh-hhhhhcCCHHHHHhhcccc
Q 015356 184 ELNLTGIMS------AHG-CKQFADALLANAD--ASKTYQDAAIGGLTVFCPLDDPFKAF-LPKFKNLSAADKTSFLEFL 253 (408)
Q Consensus 184 ~~nit~~L~------~~~-~stf~~~ll~~tg--l~~~l~~~~~~~~TVFAPtD~AF~~l-~~~l~~l~~~~l~~lL~yH 253 (408)
..||+++|+ +.+ |++|.+ +++++| |.+.|++. ++||||||+|+||+++ ...+. .+.+.++++|+||
T Consensus 5 ~~~i~~~L~~~~~~~~~~~~s~~~~-~l~~ag~~l~~~L~~~--~~~TvFAPtn~Af~~~~~~~l~-~~~~~l~~iL~yH 80 (324)
T 1o70_A 5 DTTVTQFLQSFKENAENGALRKFYE-VIMDNGGAVLDDINSL--TEVTILAPSNEAWNSSNINNVL-RDRNKMRQILNMH 80 (324)
T ss_dssp --------------CCHHHHHHHHH-HHHHTCSHHHHHHHTC--SSEEEEEECHHHHHHTCTHHHH-TCHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhhhcCCcHHHHHH-HHHHHhHHHHHHHcCC--CCeEEEEEChHhhhcccHhhhh-CCHHHHHHHHHhc
Confidence 358999998 455 999999 999999 99999987 8999999999999886 22221 2778999999999
Q ss_pred ccccccchhhhhcCCc----cceeeeccCCceeEEEEEec--CCeEEEeecceeeEEEeeecccCCeEEEEeCccCCCCc
Q 015356 254 GVPVYQSLSMLKSNNG----LLNTLATDGGKKFDLTVQDE--GEEVTLKTKVNSVKITGTLIDEQPVAMYTTDKVLMPKE 327 (408)
Q Consensus 254 Vv~~~~~~~~l~~~~~----~v~Tla~~~~~~~~l~v~~~--g~~v~v~tg~~~a~V~~t~~~~~~gvIh~ID~VL~P~~ 327 (408)
|++++++.++|....+ .++|+.+. ..+.+++... ++.++++.|..+++|+..++..+||+||+||+||+|+.
T Consensus 81 vv~g~~~~~~l~~~~~~~~~~~~Tl~g~--~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~VL~pp~ 158 (324)
T 1o70_A 81 IIKDRLNVDKIRQKNANLIAQVPTVNNN--TFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGVPY 158 (324)
T ss_dssp EESSCCCHHHHHHHTSSSCCCEEBSSTT--CEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCTTSCC
T ss_pred EeCCeecHHHHhhccCCCceEEEcCCCC--ceEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEchhhhhch
Confidence 9999999999875432 57888753 1245666643 34688877666799999999999999999999999964
No 6
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.79 E-value=3.7e-20 Score=161.16 Aligned_cols=128 Identities=22% Similarity=0.266 Sum_probs=99.7
Q ss_pred cccHHHHHccCCChHHHHHHHHhcchhhhhcCCCCeEEEEeCChhhhhhhcCC---C----CHHHHHHHHhhcccccccC
Q 015356 22 AHNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKH---P----SITTVKNVLSLHILLDYFG 94 (408)
Q Consensus 22 a~nI~~~L~~~~~lStf~~lL~~t~L~~~l~~~~~iTVfAPtN~Af~~l~~~~---~----~~~~L~~lL~yHVl~~~~~ 94 (408)
..||.++|.++++||+|.++|+++||.+.|++.+++|||||+|+||+++.... + +.+.|+++|+|||++++|.
T Consensus 2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~ 81 (137)
T 1w7d_A 2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVM 81 (137)
T ss_dssp CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCC
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEc
Confidence 46899999999999999999999999999999999999999999999986531 2 5788999999999999999
Q ss_pred ccccccccCCcccccccccccCCCCCCcceEEEEeCCCCeEEEcccCCCCcceeeEeeeeccccCcceeeeEecccccc
Q 015356 95 AKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSSD 173 (408)
Q Consensus 95 ~~~L~~l~~~~~~~~Tl~~~tg~a~~~~g~vnIt~~~~G~V~~~s~~~g~~~~at~v~~v~~~~~n~~V~~Id~vL~p~ 173 (408)
.++|.. + ..++|+- | ..+.|+. .+| +.++ | +++++.. -...||+||.||+||.|+
T Consensus 82 ~~~l~~---~-~~~~tl~---G------~~l~v~~-~~g-v~vn----~----a~v~~~d-i~~~NGvIHvID~VL~P~ 136 (137)
T 1w7d_A 82 SSDLTE---G-MTAETVE---G------GALTVTL-EGG-PKVN----G----VSISQPD-VDASNGVIHVIDGVLMPG 136 (137)
T ss_dssp TTTSCS---S-EEEECTT---S------CEEEEEC-TTS-CEET----T----EECSBCC-CBCSSSEEEBCSSCCSSC
T ss_pred HHHhcC---C-CeeeccC---C------ceEEEEe-cCC-EEEe----C----cEEEECC-eecCCeEEEEECeeeCCC
Confidence 888753 2 2244431 1 2477776 356 7663 2 3344331 234699999999999986
No 7
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.79 E-value=2.7e-19 Score=154.72 Aligned_cols=126 Identities=19% Similarity=0.202 Sum_probs=96.2
Q ss_pred ccHHHHHccCCChHHHHHHHHhcchhhhhcCCCCeEEEEeCChhhhhhhcCC-----CCHHHHHHHHhhcccccccCccc
Q 015356 23 HNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKH-----PSITTVKNVLSLHILLDYFGAKK 97 (408)
Q Consensus 23 ~nI~~~L~~~~~lStf~~lL~~t~L~~~l~~~~~iTVfAPtN~Af~~l~~~~-----~~~~~L~~lL~yHVl~~~~~~~~ 97 (408)
.||.++|+++++||+|.++++++||.+.|++.++||||||+|+||+++.... .+.+.|+++|+|||+++.+...+
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~ 81 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGG 81 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTT
T ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhh
Confidence 5899999999999999999999999999999999999999999999986431 26889999999999999888777
Q ss_pred cccccCCcccccccccccCCCCCCcceEEEEeCCCCeEEEcccCCCCcceeeEeeeeccccCcceeeeEecccc
Q 015356 98 LHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLS 171 (408)
Q Consensus 98 L~~l~~~~~~~~Tl~~~tg~a~~~~g~vnIt~~~~G~V~~~s~~~g~~~~at~v~~v~~~~~n~~V~~Id~vL~ 171 (408)
+.. + ..++|+- | ..+.|+. .+|.+.++ | +++++.. -...||+||.||+||+
T Consensus 82 l~~---~-~~~~tl~---G------~~l~v~~-~~~~v~vn----~----a~v~~~d-i~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 82 IGA---L-VRLKSLQ---G------DKLEVSL-KNNVVSVN----K----EPVAEPD-IMATNGVVHVITNVLQ 132 (132)
T ss_dssp CSS---C-EEEEBTT---S------SEEEEEE-ETTEEEES----S----CBEEEEE-EEETTEEEEEESSCC-
T ss_pred ccC---C-ceEecCC---C------CEEEEEE-eCCEEEEe----c----cEEEEcc-eecCCEEEEEECcEeC
Confidence 642 1 2244541 1 2467765 45677763 3 2344422 1236999999999984
No 8
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.76 E-value=9.8e-19 Score=156.76 Aligned_cols=127 Identities=24% Similarity=0.310 Sum_probs=99.3
Q ss_pred CcccHHHHHccCCChHHHHHHHH-----hcchhhhhcCCCCeEEEEeCChhhhhhhcCC-----CCHHHHHHHHhhcccc
Q 015356 21 QAHNITRILAGHPSFSTFNHYLS-----VTHLADEINRKTTITVCAIDNAGMSELLSKH-----PSITTVKNVLSLHILL 90 (408)
Q Consensus 21 ~a~nI~~~L~~~~~lStf~~lL~-----~t~L~~~l~~~~~iTVfAPtN~Af~~l~~~~-----~~~~~L~~lL~yHVl~ 90 (408)
...+|.++|.++++||+|.++|+ +++|.+.|++.+ +|||||+|+||+++.... .+.+.|+++|+|||++
T Consensus 26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~ 104 (163)
T 1nyo_A 26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVA 104 (163)
T ss_dssp HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEE
T ss_pred CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceEC
Confidence 34699999999999999999999 999999999988 999999999999985421 1568899999999999
Q ss_pred cccCccccccccCCcccccccccccCCCCCCcceEEEEeCCCCeEEEcccCCCCcceeeEeeeeccccCcceeeeEeccc
Q 015356 91 DYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVL 170 (408)
Q Consensus 91 ~~~~~~~L~~l~~~~~~~~Tl~~~tg~a~~~~g~vnIt~~~~G~V~~~s~~~g~~~~at~v~~v~~~~~n~~V~~Id~vL 170 (408)
++|..++|. + .++|+- | ..++|+. .+|.+.++ + +++++... ...||+||.||+||
T Consensus 105 g~~~~~~l~----g--~~~Tl~---G------~~l~v~~-~~~~v~vn----~----a~V~~~di-~a~NGvIHvID~VL 159 (163)
T 1nyo_A 105 GQTSPANVV----G--TRQTLQ---G------ASVTVTG-QGNSLKVG----N----ADVVCGGV-STANATVYMIDSVL 159 (163)
T ss_dssp SCCCTTTSC----E--EEECTT---S------SEEEEEE-CSSCEEET----T----EECSSBCC-CCSSEEEBCBSSCC
T ss_pred CEEcHHHhC----C--ccccCC---C------CEEEEEE-ECCEEEEe----c----cEEEECce-EcCCEEEEEECcEe
Confidence 999998884 2 245541 2 2477776 45667763 2 34444321 34699999999999
Q ss_pred ccc
Q 015356 171 SSD 173 (408)
Q Consensus 171 ~p~ 173 (408)
+|+
T Consensus 160 ~P~ 162 (163)
T 1nyo_A 160 MPP 162 (163)
T ss_dssp CCC
T ss_pred CCC
Confidence 986
No 9
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=9.74 E-value=4.3e+02 Score=17.62 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHHHhhhccCcccHHHHHcc---CCChHHHHHHHHhcchhhhhcCCCCeEE
Q 015356 1 MPQLKTAFLLFSLLLLVSAAQAHNITRILAG---HPSFSTFNHYLSVTHLADEINRKTTITV 59 (408)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a~nI~~~L~~---~~~lStf~~lL~~t~L~~~l~~~~~iTV 59 (408)
|.+-.|...++.++-.-...++..|.+.|.+ .-..+|..+.|.+-|+. .+...++.+.
T Consensus 1 m~~~~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v-~~~~~~~~~~ 61 (64)
T 2p5k_A 1 MNKGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLV-KVPTNNGSYK 61 (64)
T ss_dssp -CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE-EEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE-EEecCCCcee
Confidence 3333444444443333344567778888842 34567888988877766 5544444443
No 10
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}
Probab=6.58 E-value=1.8e+02 Score=28.33 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=15.1
Q ss_pred cCCChHHHHHHHHhcchhhhhcCCCCeEEEEeC
Q 015356 31 GHPSFSTFNHYLSVTHLADEINRKTTITVCAID 63 (408)
Q Consensus 31 ~~~~lStf~~lL~~t~L~~~l~~~~~iTVfAPt 63 (408)
...+|++..++|....- ..+.+||++..
T Consensus 40 g~g~f~TIq~Ai~aa~~-----~~~~~~I~I~~ 67 (364)
T 3uw0_A 40 QGDEFSSINAALKSAPK-----DDTPFIIFLKN 67 (364)
T ss_dssp ----CCCHHHHHHHSCS-----SSSCEEEEECS
T ss_pred CCCCcccHHHHHhhccc-----CCCcEEEEEeC
Confidence 34689999988876431 11346777653
Done!