BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015358
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08954|YP199_YEAST Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1
Length = 240
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Query: 233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
D+ Y R+ A + + Q S + AY +GD A + S K++ + AE N +AA+
Sbjct: 23 DEEYQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEKSKAQLKTAEDFNMQAAE 82
Query: 293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQ-KIEMQRPMNCSVSPKKVKSKNGMV- 350
+ N+++ ++DLHGL+ EA+ LQ+R++ I+ P + K + S+NG+
Sbjct: 83 YVFVENNADSSSNEIDLHGLYVKEALFILQKRIKFAIDHNEPQLNVIVGKGLHSQNGIAK 142
Query: 351 CTASLESF 358
S+E F
Sbjct: 143 LKPSIEEF 150
>sp|Q9UTP4|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=4
SV=1
Length = 206
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 257 ANNAYLRGDHFSAQQHSLKARKEWLIAERL---NSKAAKEILGIRNSENDMWKLDLHGLH 313
A +AY G+ A + S + + L ER+ N +AA I +NS+ + ++DLHGL+
Sbjct: 25 AQHAYSAGNKAKAHELSQEGK---LCGERMENYNRQAASAIYLYKNSQCNPDEIDLHGLY 81
Query: 314 AAEAVQALQERLQ 326
EAVQA+Q+R++
Sbjct: 82 IDEAVQAVQQRIE 94
>sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2
Length = 1770
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 325 LQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQI--QKSLQV 382
L IE+ +N S+ P+ V +G+ +LE M V++K+ +Q + L V
Sbjct: 1672 LAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHL----MRVLEKKTEEFKQNGGKPYLSV 1727
Query: 383 ITGIGNHSRGQAAL--PTAVKNFLSES 407
ITG GNHS+G A P +K +S S
Sbjct: 1728 ITGRGNHSQGGVARIKPAVIKYLISHS 1754
>sp|Q8NP03|RRF_CORGL Ribosome-recycling factor OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=frr PE=1 SV=1
Length = 185
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 40 LTSLRNCENVSRNTDVLVKPFS--SVLRPSVEFPTLTEENECDY------KGKHGHKAIE 91
++S++ EN RN+D+ V P + VLR V P LTEE D KG+ G AI
Sbjct: 72 MSSMQVIENAIRNSDLGVNPTNDGQVLR--VTIPQLTEERRKDMVKLAKGKGEDGKIAI- 128
Query: 92 QHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIA 151
++ R + +LK L D ED ++A + ++ + + G V+ KE ++
Sbjct: 129 RNIRRKGMDQLKKLQKDGDAG--EDEVQAAEKELDKVTA---GFVAQVDEVVARKEKELM 183
Query: 152 E 152
E
Sbjct: 184 E 184
>sp|A4QF29|RRF_CORGB Ribosome-recycling factor OS=Corynebacterium glutamicum (strain R)
GN=frr PE=3 SV=1
Length = 185
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 40 LTSLRNCENVSRNTDVLVKPFS--SVLRPSVEFPTLTEENECDY------KGKHGHKAIE 91
++S++ EN RN+D+ V P + VLR V P LTEE D KG+ G AI
Sbjct: 72 MSSMQVIENAIRNSDLGVNPTNDGQVLR--VTIPQLTEERRKDMVKLAKGKGEDGKIAI- 128
Query: 92 QHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIA 151
++ R + +LK L D ED ++A + ++ + + G V+ KE ++
Sbjct: 129 RNIRRKGMDQLKKLQKDGDAG--EDEVQAAEKELDKVTA---GFVAQVDEVVARKEKELM 183
Query: 152 E 152
E
Sbjct: 184 E 184
>sp|C3PH48|RRF_CORA7 Ribosome-recycling factor OS=Corynebacterium aurimucosum (strain
ATCC 700975 / DSM 44827 / CN-1) GN=frr PE=3 SV=1
Length = 185
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 43 LRNCENVSRNTDVLVKPFS--SVLRPSVEFPTLTEENECDY------KGKHGHKAIEQHS 94
+ EN RN+D+ V P + VLR V P LTEE D KG+ G AI ++
Sbjct: 75 MNEIENAIRNSDLGVNPTNDGQVLR--VTIPQLTEERRRDMVKMAKSKGEDGKIAI-RNI 131
Query: 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAE 152
R A+++LK L D ED + A + ++++ ++ G + NKE ++ E
Sbjct: 132 RRRAMEQLKKLQKDGDAG--EDEVIAAEKEMEKITS---GYIEQVDKLVANKEEELME 184
>sp|B0TQC5|PROB_SHEHH Glutamate 5-kinase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=proB PE=3 SV=1
Length = 372
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 238 VHRKDAMKMMRSASQHSKAANNAYLR---GDHFSAQQHSLKARKEWLIA 283
+ R+ ++++ ++ H N G HF+A +H L++RK+W++A
Sbjct: 227 IARRAGVEVVIASGHHKDVIQNVVCAKPVGTHFTALEHPLESRKQWILA 275
>sp|A0LV51|RRF_ACIC1 Ribosome-recycling factor OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=frr PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 42 SLRNCENVSRNTDVLVKPF--SSVLRPSVEFPTLTEENECDYKGKHGHKA---------I 90
SLR E R++D+ V P SV+R V P LTEE DY H+A I
Sbjct: 74 SLRAIEKAIRDSDLGVNPTDDGSVIR--VAIPPLTEERRRDYIKMARHEAEEARVAIRNI 131
Query: 91 EQHSRDLALKKLK 103
+H++D AL KL+
Sbjct: 132 RRHAKD-ALDKLQ 143
>sp|A8M8R5|PSB2_CALMQ Proteasome subunit beta 2 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=psmB2 PE=3
SV=1
Length = 200
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 101 KLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDES 160
KL L SW SLIED A+ N + A L+E SSS + +E KE I I
Sbjct: 119 KLFILDSW--GSLIEDDFAALGNGARTAIGLIETGYSSSITVKEAKELAIKAIKEAIARD 176
Query: 161 PCYRKG 166
P G
Sbjct: 177 PTSGDG 182
>sp|Q8FP75|RRF_COREF Ribosome-recycling factor OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=frr PE=3 SV=1
Length = 185
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 40 LTSLRNCENVSRNTDVLVKPFS--SVLRPSVEFPTLTEENECDY------KGKHGHKAIE 91
++S+ EN RN+D+ V P + VLR V P LTEE D KG+ G AI
Sbjct: 72 MSSMGVIENAIRNSDLGVNPTNDGQVLR--VTIPQLTEERRRDMVKIAKGKGEDGKIAI- 128
Query: 92 QHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRAS 129
++ R +++LK L D ED + A + ++ + +
Sbjct: 129 RNVRRKGMEQLKKLQK--DGEFGEDEVAAAEKELDKIT 164
>sp|Q0VTI2|RUVX_ALCBS Putative Holliday junction resolvase OS=Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573) GN=ABO_0113 PE=3
SV=1
Length = 133
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 262 LRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSEN 302
+R F+ + H +K WLI ERL+++ A+E GI+ +++
Sbjct: 71 VRARKFANRLHGRFGKKVWLIDERLSTREARERTGIKKADS 111
>sp|Q31E54|BIOF_THICR 8-amino-7-oxononanoate synthase OS=Thiomicrospira crunogena (strain
XCL-2) GN=bioF PE=3 SV=1
Length = 397
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
Query: 269 AQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWK---LDLHGLHAAEAVQALQERL 325
A Q +L + +W++A++LN A I G R SE D+ + LD+ QAL++RL
Sbjct: 116 AVQQTLMQKGDWILADKLNH--ASLIDGARYSEADLKRYPHLDM---------QALEKRL 164
Query: 326 QKIEMQRPMNCSVSPKKVKSKNG 348
QK + Q C + V S +G
Sbjct: 165 QKAQ-QENRQCLIVTDGVFSMDG 186
>sp|Q8C547|HTR5B_MOUSE HEAT repeat-containing protein 5B OS=Mus musculus GN=Heatr5b PE=2
SV=3
Length = 2070
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 56 LVKPFSSVLRPSVEFP--TLTEENECDYKGKHGHKAIEQHS-RDLALKKLKALHSWADNS 112
++K F+SV P EFP + E+ + + G A Q + D+ K + +W +
Sbjct: 1321 IIKKFASV--PEPEFPGHVILEQYQANV-GAALRPAFSQDTPSDIIAKACQVCSTWIGSG 1377
Query: 113 LIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEI 169
++ DL ND++R NLL + + + + + ES++T+++ + E+
Sbjct: 1378 VVSDL-----NDLRRVHNLLVSSLDTVQAGKGSSSQLYRESATTMEKLAVLKAWAEV 1429
>sp|P31102|AROB_BACSU 3-dehydroquinate synthase OS=Bacillus subtilis (strain 168) GN=aroB
PE=3 SV=1
Length = 362
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 170 CFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSL--PIE 227
FLE+ L++ +L T D +ND + + ++A SV+ +K++G+++ + +L +E
Sbjct: 195 AFLEELLNIHSLRDITNDQLNDMIFKGISIKA-SVVQQDEKEEGIRAYLNFGHTLGHAVE 253
Query: 228 PEW 230
E+
Sbjct: 254 AEY 256
>sp|P61303|RRF_CORDI Ribosome-recycling factor OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=frr PE=3
SV=1
Length = 185
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 40 LTSLRNCENVSRNTDVLVKPFS--SVLRPSVEFPTLTEENECDY------KGKHGHKAIE 91
++ + EN RN+D+ V P + VLR V P LTEE D KG+ G AI
Sbjct: 72 MSMMNEIENAIRNSDLGVNPTNDGQVLR--VTIPQLTEERRRDMAKLAKSKGEDGKIAI- 128
Query: 92 QHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRAS 129
++ R + +LK + D ED ++A + ++ + +
Sbjct: 129 RNVRRKGMDQLKKIQKDGDAG--EDEVQAAEKELDKVT 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,248,420
Number of Sequences: 539616
Number of extensions: 5321615
Number of successful extensions: 14130
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 14033
Number of HSP's gapped (non-prelim): 132
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)