Query 015358
Match_columns 408
No_of_seqs 156 out of 455
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkc_A NEDD4-binding protein 2 99.8 1.8E-21 6E-26 170.3 6.3 105 265-408 13-119 (135)
2 3fau_A NEDD4-binding protein 2 99.5 4.3E-14 1.5E-18 113.2 6.8 64 306-408 2-66 (82)
3 2d9i_A NEDD4-binding protein 2 99.4 3.5E-13 1.2E-17 110.8 8.1 68 302-408 6-74 (96)
4 3qd7_X Uncharacterized protein 98.9 7.8E-10 2.7E-14 97.4 5.4 61 303-407 46-107 (137)
5 2zqe_A MUTS2 protein; alpha/be 98.6 7.8E-08 2.7E-12 77.8 6.6 55 304-407 4-58 (83)
6 2dhy_A CUE domain-containing p 97.8 4.1E-05 1.4E-09 60.2 6.0 47 95-141 18-64 (67)
7 1wgl_A TOLL-interacting protei 97.7 4.6E-05 1.6E-09 58.4 4.8 45 95-139 9-53 (59)
8 1p3q_Q VPS9P, vacuolar protein 97.1 0.00015 5E-09 55.0 1.6 42 95-136 12-53 (54)
9 1otr_A Protein CUE2; protein-p 97.1 0.00074 2.5E-08 50.1 5.0 43 95-137 4-46 (49)
10 1z96_A DNA-damage, UBA-domain 90.1 0.54 1.9E-05 31.8 5.0 36 95-132 4-39 (40)
11 2g3q_A Protein YBL047C; endocy 87.8 0.8 2.7E-05 31.9 4.7 37 95-133 4-40 (43)
12 1vg5_A RSGI RUH-014, rhomboid 84.7 1.1 3.9E-05 35.3 4.6 38 95-134 29-66 (73)
13 2jy5_A Ubiquilin-1; UBA, alter 84.2 1.8 6E-05 31.8 5.2 38 95-133 12-49 (52)
14 2bwb_A Ubiquitin-like protein 83.4 1.6 5.6E-05 31.3 4.6 39 94-133 6-44 (46)
15 2knz_A Ubiquilin-4; cytoplasm, 83.3 1.6 5.6E-05 32.0 4.7 39 95-134 11-49 (53)
16 2dah_A Ubiquilin-3; UBA domain 82.3 2.2 7.7E-05 31.6 5.1 40 95-135 9-48 (54)
17 1wji_A Tudor domain containing 81.8 1.8 6.1E-05 33.1 4.5 39 95-135 9-47 (63)
18 1ify_A HHR23A, UV excision rep 80.6 1.6 5.6E-05 31.5 3.8 38 95-134 8-45 (49)
19 1wr1_B Ubiquitin-like protein 80.1 2.4 8.3E-05 32.0 4.7 41 93-134 15-55 (58)
20 1vej_A Riken cDNA 4931431F19; 79.7 2.8 9.6E-05 33.3 5.1 40 95-135 29-68 (74)
21 1veg_A NEDD8 ultimate buster-1 77.4 3.2 0.00011 33.7 4.9 39 95-135 29-67 (83)
22 1wj7_A Hypothetical protein (R 76.9 3.3 0.00011 35.0 5.0 50 95-145 39-88 (104)
23 1dv0_A DNA repair protein HHR2 75.5 0.85 2.9E-05 32.9 0.9 38 95-134 4-41 (47)
24 2dkl_A Trinucleotide repeat co 75.4 5.4 0.00018 32.2 5.7 38 95-134 21-58 (85)
25 2dae_A KIAA0733 protein; mitog 74.1 2 7E-05 34.3 2.8 40 96-135 11-50 (75)
26 1vdl_A Ubiquitin carboxyl-term 73.9 5.5 0.00019 32.1 5.3 44 92-135 21-64 (80)
27 2di0_A Activating signal coint 69.4 7.4 0.00025 30.8 5.1 40 95-134 13-52 (71)
28 2d9s_A CBL E3 ubiquitin protei 68.7 12 0.00041 28.1 5.8 41 95-137 9-49 (53)
29 2qsf_X RAD23, UV excision repa 68.3 5.3 0.00018 36.3 4.7 39 95-135 130-168 (171)
30 1wiv_A UBP14, ubiquitin-specif 67.0 8.1 0.00028 30.2 4.9 38 95-134 29-66 (73)
31 2dak_A Ubiquitin carboxyl-term 65.4 7.2 0.00025 29.3 4.2 39 95-135 9-47 (63)
32 3k9o_A Ubiquitin-conjugating e 63.1 7.4 0.00025 35.3 4.6 37 95-133 163-199 (201)
33 4fm3_A Uncharacterized hypothe 62.4 67 0.0023 26.7 10.2 65 247-333 31-95 (98)
34 2ooa_A E3 ubiquitin-protein li 62.3 14 0.00047 27.7 5.0 39 95-135 11-49 (52)
35 2cpw_A CBL-interacting protein 61.8 11 0.00038 28.6 4.7 37 96-134 20-57 (64)
36 2dag_A Ubiquitin carboxyl-term 61.1 33 0.0011 26.7 7.4 39 95-135 9-48 (74)
37 2juj_A E3 ubiquitin-protein li 57.5 12 0.00042 28.4 4.1 41 95-137 7-47 (56)
38 2dai_A Ubadc1, ubiquitin assoc 55.5 17 0.00057 29.2 4.9 38 95-134 29-66 (83)
39 2oo9_A E3 ubiquitin-protein li 51.8 30 0.001 25.3 5.2 40 96-137 5-44 (46)
40 2lbc_A Ubiquitin carboxyl-term 51.4 19 0.00065 30.2 4.9 38 95-134 78-115 (126)
41 2cwb_A Chimera of immunoglobul 51.1 19 0.00065 30.4 4.8 40 95-135 66-105 (108)
42 2dna_A Unnamed protein product 50.6 25 0.00086 27.4 5.0 41 95-136 19-59 (67)
43 2lva_A Ubiquitin carboxyl-term 53.1 4 0.00014 35.7 0.0 41 95-135 18-58 (129)
44 2ekk_A UBA domain from E3 ubiq 46.8 28 0.00095 24.4 4.4 36 95-133 9-44 (47)
45 1whc_A RSGI RUH-027, UBA/UBX 3 46.3 23 0.0008 26.8 4.2 39 95-135 9-48 (64)
46 4ae4_A Ubiquitin-associated pr 43.3 27 0.00092 29.6 4.6 37 97-135 78-114 (118)
47 2cp9_A EF-TS, EF-TSMT, elongat 42.6 32 0.0011 26.5 4.5 41 95-136 9-49 (64)
48 2crn_A Ubash3A protein; compac 38.9 39 0.0013 25.6 4.4 38 96-135 10-48 (64)
49 3e46_A Ubiquitin-conjugating e 38.3 34 0.0012 32.5 4.9 37 95-133 215-251 (253)
50 2i7u_A Four-alpha-helix bundle 37.2 1.2E+02 0.0042 22.7 6.7 53 238-290 3-55 (62)
51 2cp8_A NEXT to BRCA1 gene 1 pr 36.0 51 0.0017 24.7 4.5 42 93-135 7-48 (54)
52 1vek_A UBP14, ubiquitin-specif 34.4 56 0.0019 26.0 4.9 39 95-135 29-68 (84)
53 1oqy_A HHR23A, UV excision rep 32.3 14 0.00048 36.9 1.2 39 95-135 325-363 (368)
54 3o10_A Sacsin; all-helical dom 27.6 83 0.0028 26.8 5.2 39 240-278 6-44 (141)
55 3e7l_A Transcriptional regulat 25.6 51 0.0017 24.0 3.0 28 107-134 17-44 (63)
56 2fi9_A Outer membrane protein; 20.6 57 0.002 27.6 2.7 25 381-408 71-95 (128)
No 1
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-21 Score=170.29 Aligned_cols=105 Identities=31% Similarity=0.309 Sum_probs=72.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccc
Q 015358 265 DHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSEN-DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKV 343 (408)
Q Consensus 265 d~~aAk~lS~kAr~~~~~ae~an~kAA~~If~~rN~~~-~~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~ 343 (408)
.+.+|++||++|+.+.++|+++|.+||+.||+.+|... ...+|||||+++.||+.+|+.+|.......
T Consensus 13 ~~~~A~~~s~~g~~~~~~~~~~~~~Aa~~If~~~N~~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~~~~----------- 81 (135)
T 2vkc_A 13 HMLVPRGSLQQGTLHEQKMKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEF----------- 81 (135)
T ss_dssp ------------------CCSHHHHHHHHHHHHHHHHHGGGTEEECTTCCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCceEEeCCCcHHHHHHHHHHHHHHHHHHH-----------
Confidence 35789999999999999999999999999999999864 578999999999999999999999753110
Q ss_pred cccCCcccccccccccccchhhhhhhhhhhhccCccEEEEEccCCCCCCC-CCcHHHHHHHHHhcC
Q 015358 344 KSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQ-AALPTAVKNFLSESG 408 (408)
Q Consensus 344 ~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VITG~G~HS~G~-arL~pAV~~fL~e~G 408 (408)
. ...+...|+||||+|+||.|+ ++|+++|..||.+++
T Consensus 82 ------------------------~----~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~ 119 (135)
T 2vkc_A 82 ------------------------K----QNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHS 119 (135)
T ss_dssp ------------------------H----HTCCCSEEEEECCSCSSSCCSCCTHHHHHHHHHHTTT
T ss_pred ------------------------H----hhCCCeEEEEEECCCcCCCCCCchHHHHHHHHHhcCC
Confidence 0 001123799999999999965 899999999999864
No 2
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.48 E-value=4.3e-14 Score=113.23 Aligned_cols=64 Identities=41% Similarity=0.521 Sum_probs=45.1
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEEEc
Q 015358 306 KLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITG 385 (408)
Q Consensus 306 ~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VITG 385 (408)
+|||||+++.||+.+|+++|..+...+. ...+...+.||||
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~---------------------------------------~~~g~~~v~II~G 42 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFK---------------------------------------QNGGKPYLSVITG 42 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHH---------------------------------------HHCCCCEEEEECC
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhh---------------------------------------ccCCceEEEEEEC
Confidence 7999999999999999999998753210 0012247999999
Q ss_pred cCCCCCC-CCCcHHHHHHHHHhcC
Q 015358 386 IGNHSRG-QAALPTAVKNFLSESG 408 (408)
Q Consensus 386 ~G~HS~G-~arL~pAV~~fL~e~G 408 (408)
+|+||.+ .++||++|.+||.+++
T Consensus 43 kG~hS~~g~~~Lk~~V~~~L~~~~ 66 (82)
T 3fau_A 43 RGNHSQGGVARIKPAVIKYLISHS 66 (82)
T ss_dssp C---------CHHHHHHHHHHHTT
T ss_pred CCCCCCCCcchHHHHHHHHHHhCC
Confidence 9999995 5899999999999874
No 3
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.42 E-value=3.5e-13 Score=110.80 Aligned_cols=68 Identities=40% Similarity=0.485 Sum_probs=54.1
Q ss_pred CCCCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEE
Q 015358 302 NDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQ 381 (408)
Q Consensus 302 ~~~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~ 381 (408)
....+|||||+++.||+.+|+++|..+.... . ...+...|.
T Consensus 6 ~~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~-----------------------------------~----~~~g~~~v~ 46 (96)
T 2d9i_A 6 SGQNVLDLHGLHVDEALEHLMRVLEKKTEEF-----------------------------------K----QNGGKPYLS 46 (96)
T ss_dssp CSCCEEECTTSCHHHHHHHHHHHHHHHHHHH-----------------------------------H----HTTCCSEEE
T ss_pred CCCCeEECCCCCHHHHHHHHHHHHHHHHHHH-----------------------------------H----hhCCCeEEE
Confidence 4678999999999999999999999763210 0 001124799
Q ss_pred EEEccCCCCCCC-CCcHHHHHHHHHhcC
Q 015358 382 VITGIGNHSRGQ-AALPTAVKNFLSESG 408 (408)
Q Consensus 382 VITG~G~HS~G~-arL~pAV~~fL~e~G 408 (408)
||||+|+||.++ ++||++|..||.+++
T Consensus 47 IIhGkG~hS~~g~~~Lk~~V~~~L~~~~ 74 (96)
T 2d9i_A 47 VITGRGNHSQGGVARIKPAVIKYLISHS 74 (96)
T ss_dssp EECCCSGGGTTCTTCHHHHHHHHHHHTT
T ss_pred EEECcCCCCCCCcchHHHHHHHHHhhCC
Confidence 999999999955 899999999999864
No 4
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=98.92 E-value=7.8e-10 Score=97.41 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=52.0
Q ss_pred CCCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEE
Q 015358 303 DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQV 382 (408)
Q Consensus 303 ~~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~V 382 (408)
...+|||||+++.||...|..+|...... +...+.|
T Consensus 46 ~~~~LDLHG~~~~EA~~~L~~fL~~a~~~--------------------------------------------g~r~V~I 81 (137)
T 3qd7_X 46 QQASLNLLRQPVEECRKMVFSFIQQALAD--------------------------------------------GLRNVLI 81 (137)
T ss_dssp GGGEEECTTCCHHHHHHHHHHHHHHHHHT--------------------------------------------TCSEEEE
T ss_pred CCeEEECCCCCHHHHHHHHHHHHHHHHHC--------------------------------------------CCCEEEE
Confidence 46799999999999999999999986321 1237999
Q ss_pred EEccCCCCCCC-CCcHHHHHHHHHhc
Q 015358 383 ITGIGNHSRGQ-AALPTAVKNFLSES 407 (408)
Q Consensus 383 ITG~G~HS~G~-arL~pAV~~fL~e~ 407 (408)
|||+|.||.+. +.|+.+|..||.++
T Consensus 82 IHGKG~gs~~~~~vLk~~V~~wL~~~ 107 (137)
T 3qd7_X 82 IHGKGRDDKSHANIVRSYVARWLTEF 107 (137)
T ss_dssp ECCCCSSTTSHHHHHHHHHHHHHHTS
T ss_pred EECCCCCCCCchHHHHHHHHHHHhcC
Confidence 99999999865 69999999999874
No 5
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=98.58 E-value=7.8e-08 Score=77.78 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=46.4
Q ss_pred CCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEE
Q 015358 304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI 383 (408)
Q Consensus 304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VI 383 (408)
..+|||||++++||...|+.+|...... +...+.||
T Consensus 4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~~--------------------------------------------g~~~v~II 39 (83)
T 2zqe_A 4 VKEVDLRGLTVAEALLEVDQALEEARAL--------------------------------------------GLSTLRLL 39 (83)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHHHHHHT--------------------------------------------TCSEEEEE
T ss_pred ccEEECCCCCHHHHHHHHHHHHHHHHHC--------------------------------------------CCCEEEEE
Confidence 4789999999999999999999986321 12379999
Q ss_pred EccCCCCCCCCCcHHHHHHHHHhc
Q 015358 384 TGIGNHSRGQAALPTAVKNFLSES 407 (408)
Q Consensus 384 TG~G~HS~G~arL~pAV~~fL~e~ 407 (408)
+|+|. ..||.+|..||.++
T Consensus 40 HGkG~-----GvLr~~V~~~L~~~ 58 (83)
T 2zqe_A 40 HGKGT-----GALRQAIREALRRD 58 (83)
T ss_dssp CCSTT-----SHHHHHHHHHHHHC
T ss_pred ECCCc-----hHHHHHHHHHHhcC
Confidence 99986 48999999999874
No 6
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=4.1e-05 Score=60.22 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhccCCC
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGS 141 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~~~~~ 141 (408)
...+++.|++|||-+|..+|+.||.++++|++.|+..|..|..+...
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~~ 64 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGP 64 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCC
Confidence 56789999999999999999999999999999999999999775443
No 7
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.66 E-value=4.6e-05 Score=58.42 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhccC
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSS 139 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~~~ 139 (408)
.+-.++.|++|||-+|..+|+.||.+++||++.|+..|..|..+.
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 567899999999999999999999999999999999999996543
No 8
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.10 E-value=0.00015 Score=54.99 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV 136 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~ 136 (408)
....++.|++|||-+|.++|++|+.+-+++++.|+..|-.|.
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms 53 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLS 53 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC------
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 567899999999999999999999999999999999998884
No 9
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.06 E-value=0.00074 Score=50.10 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhc
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~ 137 (408)
.+-.++.|.+|||-++...|+-+|.+.+||++.|+..|-.|.+
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 4678999999999999999999999999999999999998844
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=90.09 E-value=0.54 Score=31.81 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHH
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL 132 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L 132 (408)
.+.++++|++| +.+.+....+|.++++|++.|+..|
T Consensus 4 ~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 4 LNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45589999999 7788999999999999999999887
No 11
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=87.80 E-value=0.8 Score=31.91 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~ 133 (408)
.+.++++|.+| +.+.+.+...|.+++||++.|+..|-
T Consensus 4 ~e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 4 KSLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45689999999 47888999999999999999999884
No 12
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=84.66 E-value=1.1 Score=35.34 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
.+.++++|.+| ..+.+.+...|.+++||+++|+.+|-.
T Consensus 29 ~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56789999999 479999999999999999999999864
No 13
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=84.22 E-value=1.8 Score=31.77 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~ 133 (408)
-+.++++|++|- +-|.+.+..+|.+++||+++|+..|-
T Consensus 12 ~~~~l~~L~~MG-F~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 12 FQQQLEQLSAMG-FLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp THHHHHHHHHTT-CCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567899999993 44999999999999999999999884
No 14
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=83.41 E-value=1.6 Score=31.30 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358 94 SRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (408)
Q Consensus 94 ~~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~ 133 (408)
.-+..+++|++|- --|...+..+|.++++|+++|+..|-
T Consensus 6 ~~~~~i~~L~~MG-F~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 6 RYEHQLRQLNDMG-FFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HTHHHHHHHHHTT-CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3567899999993 34777888999999999999999884
No 15
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=83.29 E-value=1.6 Score=32.02 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
-+.++++|++|- +-|.+.+..+|.+++||+++|+..|-.
T Consensus 11 ~~~~l~~L~~MG-F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 11 FQQQLEQLNSMG-FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 466799999993 449999999999999999999999864
No 16
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.31 E-value=2.2 Score=31.61 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
-+-.+++|++| ..-|...+..+|.++++|+++|+..|-..
T Consensus 9 ~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 9 FQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46689999999 35577888899999999999999999765
No 17
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=81.80 E-value=1.8 Score=33.10 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
.+.++++|.+| ..+.+.+...|.+++||+++|+..|-.-
T Consensus 9 ~~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 9 DEKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CHHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 56789999999 5788899999999999999999998654
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.58 E-value=1.6 Score=31.49 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
.+.++++|.+| +.+.+.+...|.+++||+++|+..|-.
T Consensus 8 ~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 56789999999 369999999999999999999999854
No 19
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=80.10 E-value=2.4 Score=32.00 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 93 HSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 93 ~~~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
..-+..+++|++|- --|.+.+..+|.++++|+++|+..|-.
T Consensus 15 ~~~~~qi~~L~~MG-F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG-FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHTHHHHHHHHHHT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 33567899999993 357888889999999999999998853
No 20
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=79.70 E-value=2.8 Score=33.26 Aligned_cols=40 Identities=33% Similarity=0.389 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
-+..+++|++|- .-|.+.+..+|.++++|+++|+..|-..
T Consensus 29 ye~qi~qL~eMG-F~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 29 YQQELEELKALG-FANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp SHHHHHHHHHHT-CCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 466899999993 3478888899999999999999998765
No 21
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.35 E-value=3.2 Score=33.67 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
.+.++++|.+| +.+.+.++-+|.+++||+++|+..|-.-
T Consensus 29 ~ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 29 SQESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 56789999999 4799999999999999999999998763
No 22
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.91 E-value=3.3 Score=35.00 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhccCCCcccc
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEEN 145 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~~~~~~~~~ 145 (408)
.+-.|++|.+| -..+.+.++.+|..+++|+.+|+..|-.=.+.....++.
T Consensus 39 ~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~~~ 88 (104)
T 1wj7_A 39 FEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMV 88 (104)
T ss_dssp HHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSC
T ss_pred HHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCceeee
Confidence 35689999999 557889999999999999999999887654433444443
No 23
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=75.54 E-value=0.85 Score=32.92 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
..-+|++|++| +.+.+++..+|.++++|.+.|...|-.
T Consensus 4 e~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 4 EKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp CHHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45689999999 789999999999999999999998843
No 24
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=75.36 E-value=5.4 Score=32.24 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
.+.++++|.+| ..+.+.++.+|.+.++|++.|+..|-.
T Consensus 21 n~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 21 MSRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47789999999 578888888999999999999999864
No 25
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.12 E-value=2 Score=34.28 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 96 ~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
---+..||+.||.+...||-+.|...+|+++..+.+|.-=
T Consensus 11 ~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 11 FQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999754
No 26
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=73.93 E-value=5.5 Score=32.09 Aligned_cols=44 Identities=14% Similarity=0.325 Sum_probs=39.8
Q ss_pred ccchHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 92 QHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 92 ~~~~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
++..+.-+++|||.-.-=|..++...|.|-++|+.+|+.+|-.-
T Consensus 21 q~~~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 21 QKHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp TSCHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 34567789999999999999999999999999999999999664
No 27
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=69.38 E-value=7.4 Score=30.78 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
-+..+..++++||-.-.--|..+|..+++|+++++..|-+
T Consensus 13 l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 13 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5678999999999999999999999999999999876654
No 28
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=68.73 E-value=12 Score=28.13 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhc
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~ 137 (408)
.+..|++|-+| +.|.+-+.-.|...+||+++|..+|-+.++
T Consensus 9 ~e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 9 LSSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREFSG 49 (53)
T ss_dssp SHHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 45669999887 688999999999999999999999998865
No 29
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=68.35 E-value=5.3 Score=36.31 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
..-+|++|++| ..|.+++-.+|.+|+.|.+.|..+|-.+
T Consensus 130 e~eaI~rL~~m--GF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 130 DDQAISRLCEL--GFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 56789999999 4798888889999999999999998654
No 30
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=67.02 E-value=8.1 Score=30.16 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
...++++|.+| +.+...++..|.+++||+++|+..|-.
T Consensus 29 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 29 DQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45689999999 478999999999999999999998854
No 31
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.41 E-value=7.2 Score=29.32 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
.+..+++|.+| ..+.+.....|.+++||++.|+..|-.-
T Consensus 9 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 9 PEDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 56789999999 4678999999999999999999998653
No 32
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=63.07 E-value=7.4 Score=35.29 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~ 133 (408)
.+.++++|.+| +.|.+.+..+|...++|.++|++.|-
T Consensus 163 ~eekV~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 163 YTKKIENLCAM--GFDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp HHHHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 47899999999 79999999999999999999999884
No 33
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=62.43 E-value=67 Score=26.73 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCCCHHHHHHHHHHHHH
Q 015358 247 MRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQ 326 (408)
Q Consensus 247 ~r~R~~~~~~Aa~Af~rGd~~aAk~lS~kAr~~~~~ae~an~kAA~~If~~rN~~~~~~~LDLHGLhv~EAv~iL~e~L~ 326 (408)
+......|.+|..|...++...|.+|.+++..-.+.++. ...+++ ..+++.-|+..|.
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeA-ka~~~K---------------------a~~~~~el~~~I~ 88 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAES-KVLTQK---------------------SKDQLGELDKSLK 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-HHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHH-HHHHHH---------------------HHHHHHHHHHHHH
Confidence 566777899999999999999999999999887766532 222222 2456677777777
Q ss_pred HHHhhCC
Q 015358 327 KIEMQRP 333 (408)
Q Consensus 327 ~i~~ql~ 333 (408)
.++.+++
T Consensus 89 ~LrqEl~ 95 (98)
T 4fm3_A 89 RLRKQLG 95 (98)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 7766553
No 34
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=62.28 E-value=14 Score=27.72 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
.+-.|++|-+| +.|.+-+...|...+||++.|..+|-+.
T Consensus 11 ~~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 11 VDAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 44789999887 6888989999999999999999999876
No 35
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.84 E-value=11 Score=28.63 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHhhc-cHHHHHHHHHh
Q 015358 96 DLALKKLKALHSWADNSLIEDLMEAVDN-DIKRASNLLEG 134 (408)
Q Consensus 96 ~~~~~kL~~~~~wad~~li~dv~~a~~n-d~~~a~~~L~~ 134 (408)
+..+++|.+| ..+.+.++..|.+++| |++.|+..|-.
T Consensus 20 e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 20 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3468999999 5788999999999998 99999998853
No 36
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.08 E-value=33 Score=26.73 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhc-cHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDN-DIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~n-d~~~a~~~L~~m 135 (408)
.+..+++|.+| +.+.+.++..|.+++| |++.|+..|-.-
T Consensus 9 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 9 DESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp CHHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 56789999999 4678889999999986 899999998653
No 37
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=57.47 E-value=12 Score=28.37 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhc
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~ 137 (408)
.+..+++|-.| +-|.+-+...|...+||+++|+.+|-+.++
T Consensus 7 ~e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 7 LSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred ChHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 56678888877 678888889999999999999999999866
No 38
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.45 E-value=17 Score=29.17 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
.+..+++|.+| +.+.+.+...|.++++|++.|+..|-.
T Consensus 29 ~e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 29 DEAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56789999999 577788888899999999999998865
No 39
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=51.79 E-value=30 Score=25.33 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhc
Q 015358 96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS 137 (408)
Q Consensus 96 ~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~ 137 (408)
+-.+..|-.| +-|.+-+.-.|...+||+++|+..|-+.++
T Consensus 5 e~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~~ 44 (46)
T 2oo9_A 5 SSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFAA 44 (46)
T ss_dssp HHHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 4567777766 578888888999999999999999988754
No 40
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=51.38 E-value=19 Score=30.21 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
.+..+++|.+| +.+.+.+..+|.+++||++.|+..|-.
T Consensus 78 ~e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 78 PEEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CHHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56789999999 578899999999999999999998854
No 41
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=51.13 E-value=19 Score=30.40 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
-+..+++|++|= --|.+.+..+|.++++|+++|+..|-..
T Consensus 66 ~~~qL~qL~eMG-F~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 66 WQPQLQQLRDMG-IQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp THHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 467899999995 3467788899999999999999998754
No 42
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.56 E-value=25 Score=27.35 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV 136 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~ 136 (408)
-...+++|++|= .-|......+|.+++||+++|+..|-.-.
T Consensus 19 y~~ql~qL~~MG-F~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 19 FSKEMECLQAMG-FVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp THHHHHHHHHHT-CCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 466899999985 45777778899999999999999998763
No 43
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=53.07 E-value=4 Score=35.67 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
-+.-+++|||.-.-=|..+|..+|.|.++|+.+|+.+|.+-
T Consensus 18 ~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 18 GQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 45678899999999999999999999999999999999876
No 44
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.82 E-value=28 Score=24.42 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~ 133 (408)
.+..+++|.+| +.+.+.....|.+++ |++.|+..|-
T Consensus 9 ~~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 9 NQQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp CHHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 56789999999 467788888888885 9999999884
No 45
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.29 E-value=23 Score=26.75 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHh-hccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAV-DNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~-~nd~~~a~~~L~~m 135 (408)
.+..+++|.+| ..+...++..|.++ ++|++.|+..|-.-
T Consensus 9 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 9 ELTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 34578999999 46778888888899 79999999988653
No 46
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=43.32 E-value=27 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=32.3
Q ss_pred HHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 97 ~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
-.+..|.+| +.+.++|..+|...+||+++|+..|-+=
T Consensus 78 ~~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 78 QLMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 357888888 4899999999999999999999998654
No 47
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=42.62 E-value=32 Score=26.50 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV 136 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~ 136 (408)
....+++|++.- .+.--=-...|..+|+|+++|...|..-.
T Consensus 9 t~~~Vk~LRe~T-Gag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 9 SKELLMKLRRKT-GYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp CCHHHHHHHHHH-CCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 345689999984 46666677889999999999999998664
No 48
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.85 E-value=39 Score=25.61 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=31.4
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHhhc-cHHHHHHHHHhh
Q 015358 96 DLALKKLKALHSWADNSLIEDLMEAVDN-DIKRASNLLEGM 135 (408)
Q Consensus 96 ~~~~~kL~~~~~wad~~li~dv~~a~~n-d~~~a~~~L~~m 135 (408)
+..+++|.+| +.+.+.+...|.+++| |++.|+..|-.-
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 3468999998 5777888888888887 999999988654
No 49
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=38.34 E-value=34 Score=32.47 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE 133 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~ 133 (408)
-+.++++|++| ..+.+.+..+|..++.|.++|++.|-
T Consensus 215 ~~~~v~~l~~m--gf~~~~~~~al~~~nWd~~~A~e~L~ 251 (253)
T 3e46_A 215 YTKKIENLCAA--GFDRNAVIVALSSKSWDVETATELLL 251 (253)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 47899999999 78888888899999999999999885
No 50
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=37.21 E-value=1.2e+02 Score=22.67 Aligned_cols=53 Identities=17% Similarity=0.049 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 015358 238 VHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290 (408)
Q Consensus 238 ~~RkeA~~~~r~R~~~~~~Aa~Af~rGd~~aAk~lS~kAr~~~~~ae~an~kA 290 (408)
..|.+|.++...+.++...|+....-|.+.-..++-.-..+..++++++-.-|
T Consensus 3 klreeaaklfeewkklaeeaaklleggggggggelmklceeaakkaeelfkla 55 (62)
T 2i7u_A 3 KLREEAAKLFEEWKKLAEEAAKLLEGGGGGGGGELMKLCEEAAKKAEELFKLA 55 (62)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHCSSCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988887664433343333333334444444333
No 51
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.98 E-value=51 Score=24.69 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=35.4
Q ss_pred cchHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 93 HSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 93 ~~~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
+.....+++|++| ...|.++-..+|..+++|+++|+..|-.+
T Consensus 7 e~~a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 7 GQTAALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp TTHHHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3355678999999 45688899999999999999999888877
No 52
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=34.45 E-value=56 Score=26.03 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHh-hccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAV-DNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~-~nd~~~a~~~L~~m 135 (408)
.+..+++|.+| ..+.+.+...|.+. |+|++.|+..|-.-
T Consensus 29 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 29 NEEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 57789999999 46667777777776 46999999988653
No 53
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=32.25 E-value=14 Score=36.93 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358 95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM 135 (408)
Q Consensus 95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m 135 (408)
+..+|++|++| +.+.+++..+|.+|++|.+.|..+|-..
T Consensus 325 e~eaI~rL~~m--GF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 325 EKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp THHHHHHHHHH--TCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 67789999999 6899999999999999999999988654
No 54
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=27.65 E-value=83 Score=26.78 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 015358 240 RKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARK 278 (408)
Q Consensus 240 RkeA~~~~r~R~~~~~~Aa~Af~rGd~~aAk~lS~kAr~ 278 (408)
|+++....+.....++.|..++..|+...|-.+++||=+
T Consensus 6 ~ee~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~E 44 (141)
T 3o10_A 6 PVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTK 44 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHH
Confidence 677888999999999999999999998888887776443
No 55
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.64 E-value=51 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.2
Q ss_pred cccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358 107 SWADNSLIEDLMEAVDNDIKRASNLLEG 134 (408)
Q Consensus 107 ~wad~~li~dv~~a~~nd~~~a~~~L~~ 134 (408)
..++..+|..+|..++++..+|...|.-
T Consensus 17 ~~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 17 KEFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 3468899999999999999999988854
No 56
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=20.62 E-value=57 Score=27.61 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=20.5
Q ss_pred EEEEccCCCCCCCCCcHHHHHHHHHhcC
Q 015358 381 QVITGIGNHSRGQAALPTAVKNFLSESG 408 (408)
Q Consensus 381 ~VITG~G~HS~G~arL~pAV~~fL~e~G 408 (408)
.||.|.|.. ...|+|+++++|.+.|
T Consensus 71 vliiGtG~~---~~~l~p~~~~~l~~~G 95 (128)
T 2fi9_A 71 VLLIGTGVE---LLRLPEELRVLLWEKR 95 (128)
T ss_dssp EEEEECTTS---CCCCCHHHHHHHHHTT
T ss_pred EEEECCCCC---CCCCCHHHHHHHHHcC
Confidence 468888877 4578999999999876
Done!