Query 015359
Match_columns 408
No_of_seqs 102 out of 122
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 11:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ct2_A Tripartite motif protei 96.4 0.0013 4.6E-08 49.6 2.0 51 53-104 12-65 (88)
2 1e4u_A Transcriptional repress 96.2 0.0049 1.7E-07 48.1 4.4 48 54-104 9-59 (78)
3 2ysl_A Tripartite motif-contai 96.1 0.0047 1.6E-07 45.4 3.6 49 54-104 18-66 (73)
4 1iym_A EL5; ring-H2 finger, ub 96.0 0.005 1.7E-07 43.0 3.3 46 55-104 4-52 (55)
5 2egp_A Tripartite motif-contai 96.0 0.0094 3.2E-07 44.2 4.9 50 54-104 10-62 (79)
6 2ecw_A Tripartite motif-contai 95.9 0.0027 9.3E-08 47.2 1.9 50 54-104 17-68 (85)
7 2d8t_A Dactylidin, ring finger 95.9 0.0048 1.6E-07 45.7 3.2 47 53-104 12-58 (71)
8 2ect_A Ring finger protein 126 95.9 0.0052 1.8E-07 45.9 3.3 49 53-105 12-62 (78)
9 3ztg_A E3 ubiquitin-protein li 95.7 0.0033 1.1E-07 48.4 1.5 50 53-104 10-59 (92)
10 2yur_A Retinoblastoma-binding 95.7 0.0039 1.3E-07 46.8 1.9 50 54-105 13-62 (74)
11 2ecv_A Tripartite motif-contai 95.6 0.0044 1.5E-07 46.1 1.7 50 54-104 17-68 (85)
12 2ecm_A Ring finger and CHY zin 95.5 0.0042 1.4E-07 43.3 1.4 46 55-104 4-52 (55)
13 1jm7_A BRCA1, breast cancer ty 95.3 0.0085 2.9E-07 47.2 2.6 47 56-104 21-67 (112)
14 3l11_A E3 ubiquitin-protein li 95.2 0.011 3.7E-07 47.5 2.9 45 56-104 15-59 (115)
15 2ep4_A Ring finger protein 24; 95.1 0.008 2.7E-07 44.5 1.7 49 54-107 13-64 (74)
16 2l0b_A E3 ubiquitin-protein li 95.0 0.0098 3.3E-07 46.5 2.0 47 53-104 37-86 (91)
17 2csy_A Zinc finger protein 183 94.9 0.0097 3.3E-07 45.0 1.9 48 53-105 12-59 (81)
18 1bor_A Transcription factor PM 94.9 0.029 9.9E-07 40.3 4.3 43 54-104 4-46 (56)
19 2ckl_A Polycomb group ring fin 94.9 0.02 7E-07 45.5 3.8 46 55-104 14-59 (108)
20 2y43_A E3 ubiquitin-protein li 94.9 0.0089 3E-07 46.8 1.6 45 56-104 22-66 (99)
21 2ckl_B Ubiquitin ligase protei 94.8 0.0073 2.5E-07 51.5 1.1 46 56-104 54-99 (165)
22 2ecj_A Tripartite motif-contai 94.8 0.039 1.3E-06 38.6 4.7 46 54-101 13-58 (58)
23 2ecn_A Ring finger protein 141 94.7 0.0087 3E-07 43.8 1.2 45 54-104 13-57 (70)
24 4ayc_A E3 ubiquitin-protein li 94.7 0.031 1E-06 46.6 4.6 44 57-105 54-97 (138)
25 2ecg_A Baculoviral IAP repeat- 94.6 0.02 6.8E-07 43.2 2.8 41 56-104 25-65 (75)
26 1g25_A CDK-activating kinase a 94.5 0.014 4.9E-07 42.3 1.8 46 56-104 3-52 (65)
27 2kiz_A E3 ubiquitin-protein li 94.5 0.015 5.2E-07 42.4 2.0 46 54-104 12-60 (69)
28 2djb_A Polycomb group ring fin 94.4 0.013 4.3E-07 43.6 1.3 47 54-104 13-59 (72)
29 1jm7_B BARD1, BRCA1-associated 94.3 0.034 1.2E-06 45.0 3.9 44 55-104 21-64 (117)
30 2ea6_A Ring finger protein 4; 94.3 0.0079 2.7E-07 43.3 0.1 47 54-104 13-65 (69)
31 2yho_A E3 ubiquitin-protein li 94.3 0.03 1E-06 43.3 3.4 45 56-108 18-62 (79)
32 1chc_A Equine herpes virus-1 r 94.3 0.012 4E-07 42.8 0.9 50 55-108 4-53 (68)
33 2xeu_A Ring finger protein 4; 94.2 0.005 1.7E-07 43.7 -1.1 46 55-104 2-53 (64)
34 2ecy_A TNF receptor-associated 94.0 0.027 9.3E-07 40.9 2.5 46 55-104 14-59 (66)
35 2ea5_A Cell growth regulator w 93.9 0.048 1.6E-06 41.2 3.8 44 54-105 13-56 (68)
36 2ysj_A Tripartite motif-contai 93.8 0.027 9.2E-07 40.5 2.0 46 54-101 18-63 (63)
37 3ng2_A RNF4, snurf, ring finge 93.2 0.0094 3.2E-07 43.4 -1.3 47 54-104 8-60 (71)
38 3fl2_A E3 ubiquitin-protein li 93.0 0.027 9.1E-07 45.9 1.0 46 55-104 51-96 (124)
39 1x4j_A Ring finger protein 38; 92.9 0.02 6.7E-07 42.7 0.2 46 54-104 21-69 (75)
40 4ic3_A E3 ubiquitin-protein li 92.9 0.054 1.8E-06 40.9 2.5 41 56-104 24-64 (74)
41 1wim_A KIAA0161 protein; ring 92.6 0.024 8.3E-07 44.2 0.3 50 55-104 4-61 (94)
42 2vje_B MDM4 protein; proto-onc 92.5 0.03 1E-06 41.5 0.6 48 54-105 5-54 (63)
43 1v87_A Deltex protein 2; ring- 92.3 0.032 1.1E-06 44.4 0.7 49 56-104 25-91 (114)
44 3lrq_A E3 ubiquitin-protein li 91.6 0.04 1.4E-06 43.7 0.5 47 55-104 21-67 (100)
45 1z6u_A NP95-like ring finger p 91.3 0.054 1.9E-06 46.4 1.0 46 55-104 77-122 (150)
46 1t1h_A Gspef-atpub14, armadill 91.3 0.1 3.4E-06 38.8 2.4 47 54-104 6-52 (78)
47 2vje_A E3 ubiquitin-protein li 90.0 0.089 3.1E-06 39.0 1.0 47 55-105 7-55 (64)
48 3hct_A TNF receptor-associated 89.1 0.064 2.2E-06 43.4 -0.3 46 55-104 17-62 (118)
49 1wgm_A Ubiquitin conjugation f 87.7 0.22 7.5E-06 40.1 1.9 46 55-104 21-66 (98)
50 1rmd_A RAG1; V(D)J recombinati 87.3 0.13 4.4E-06 41.2 0.3 45 56-104 23-67 (116)
51 3t6p_A Baculoviral IAP repeat- 86.7 0.26 9E-06 48.1 2.2 45 55-107 294-338 (345)
52 3htk_C E3 SUMO-protein ligase 86.6 0.36 1.2E-05 46.5 3.0 47 56-104 181-229 (267)
53 2c2l_A CHIP, carboxy terminus 86.3 0.2 6.7E-06 44.5 1.0 47 54-104 206-252 (281)
54 2ecl_A Ring-box protein 2; RNF 85.3 1.6 5.6E-05 33.2 5.6 43 58-104 28-73 (81)
55 4ap4_A E3 ubiquitin ligase RNF 85.0 0.18 6.1E-06 40.0 0.1 48 54-105 5-58 (133)
56 2y1n_A E3 ubiquitin-protein li 83.6 0.25 8.5E-06 49.5 0.4 46 56-105 332-377 (389)
57 2kr4_A Ubiquitin conjugation f 81.6 0.56 1.9E-05 36.4 1.6 45 55-104 13-57 (85)
58 2kre_A Ubiquitin conjugation f 81.3 0.55 1.9E-05 37.9 1.6 45 55-104 28-72 (100)
59 3hcs_A TNF receptor-associated 80.3 0.3 1E-05 41.6 -0.4 46 55-104 17-62 (170)
60 3knv_A TNF receptor-associated 78.7 0.23 7.8E-06 42.2 -1.6 46 55-104 30-75 (141)
61 3k1l_B Fancl; UBC, ring, RWD, 77.2 0.63 2.2E-05 46.9 0.8 51 54-104 306-370 (381)
62 2d8s_A Cellular modulator of i 73.1 1.8 6.3E-05 33.8 2.4 57 46-104 5-67 (80)
63 2yu4_A E3 SUMO-protein ligase 72.7 0.59 2E-05 36.8 -0.6 50 55-104 6-59 (94)
64 2ct0_A Non-SMC element 1 homol 71.6 4 0.00014 31.9 3.9 51 50-104 9-61 (74)
65 1q0v_A Hydrophilic protein; ha 65.7 5.1 0.00017 32.7 3.5 24 377-400 7-30 (81)
66 2f42_A STIP1 homology and U-bo 64.8 1.5 5.1E-05 39.5 0.3 47 54-104 104-150 (179)
67 3na7_A HP0958; flagellar bioge 63.8 1.2 4.1E-05 41.0 -0.5 33 77-113 198-236 (256)
68 2gmg_A Hypothetical protein PF 61.7 4.6 0.00016 34.3 2.7 27 78-105 68-94 (105)
69 3dpl_R Ring-box protein 1; ubi 58.8 5.8 0.0002 32.4 2.8 46 55-104 36-98 (106)
70 4ap4_A E3 ubiquitin ligase RNF 52.3 1.6 5.5E-05 34.4 -1.6 47 54-104 70-122 (133)
71 1wil_A KIAA1045 protein; ring 47.3 23 0.00078 29.5 4.5 53 54-106 13-78 (89)
72 4a0k_B E3 ubiquitin-protein li 35.8 9.5 0.00033 32.0 0.6 46 55-104 47-109 (117)
73 2ctu_A Zinc finger protein 483 33.8 35 0.0012 23.1 3.1 42 57-101 19-73 (73)
74 3h0g_L DNA-directed RNA polyme 32.8 18 0.00062 28.1 1.6 30 78-111 22-51 (63)
75 2d3g_P Ubiquitin interacting m 32.0 23 0.00079 23.6 1.8 18 382-399 4-21 (26)
76 4dra_E Centromere protein X; D 29.5 28 0.00095 28.3 2.3 20 207-226 42-61 (84)
77 4gut_A Lysine-specific histone 28.7 18 0.00061 38.5 1.3 31 56-90 13-56 (776)
78 2klz_A Ataxin-3; UIM, ubiquiti 28.0 27 0.00091 26.5 1.8 20 205-224 21-40 (52)
79 2ko5_A Ring finger protein Z; 27.3 71 0.0024 27.0 4.4 46 53-104 25-70 (99)
80 1twf_L ABC10-alpha, DNA-direct 26.9 22 0.00075 27.8 1.2 30 78-111 29-58 (70)
81 2eqg_A Tumor necrosis factor, 25.9 19 0.00063 26.9 0.6 27 57-89 14-40 (49)
82 3vth_A Hydrogenase maturation 23.8 42 0.0014 36.2 3.1 50 54-103 109-191 (761)
83 1zme_C Proline utilization tra 23.7 38 0.0013 24.5 1.9 17 98-114 20-36 (70)
84 2k0a_A PRE-mRNA-splicing facto 23.0 51 0.0017 28.3 2.8 44 56-110 29-73 (109)
85 2yw8_A RUN and FYVE domain-con 21.0 51 0.0018 25.5 2.3 32 55-86 18-52 (82)
No 1
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.35 E-value=0.0013 Score=49.63 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=36.8
Q ss_pred CCCCCcCCcccccCCCC---ccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 53 CCDLEECPICFLYYPSL---NRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 53 ~~~~~ECPICFlyYp~l---N~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
..+..+||||+..|..- -+..=|...+|..|+.++-... .....||+|..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKI 65 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCc
Confidence 34678999999988741 1222478999999998875432 124689999986
No 2
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.18 E-value=0.0049 Score=48.12 Aligned_cols=48 Identities=29% Similarity=0.732 Sum_probs=35.5
Q ss_pred CCCCcCCcccccC--CCCccccc-cCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYY--PSLNRSRC-CMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyY--p~lN~SrC-C~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+-.+ +.....-| |...+|..|+.++... ....||.|..+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~ 59 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKP 59 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCB
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCc
Confidence 3567899999855 22233334 8999999999999753 34689999886
No 3
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.0047 Score=45.36 Aligned_cols=49 Identities=27% Similarity=0.592 Sum_probs=35.8
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+-.|-.--.. =|...+|..|+.+.-... .....||.|+.+
T Consensus 18 ~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETS-CGFFKCPLCKTS 66 (73)
T ss_dssp CCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSS-CSCCCCSSSCCC
T ss_pred ccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcC-CCCCCCCCCCCc
Confidence 4568999999887742222 478889999999876521 235689999986
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.98 E-value=0.005 Score=43.03 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=34.6
Q ss_pred CCCcCCcccccCCC---CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPS---LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~---lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+..+||||+..|.. .-...-|...+|.+|+.+.-.. ...||.|+.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 46799999998874 3333348899999999877543 3479999875
No 5
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=95.95 E-value=0.0094 Score=44.20 Aligned_cols=50 Identities=20% Similarity=0.535 Sum_probs=35.6
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCC---CCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNT---TRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~---s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-.--.. =|...+|.+|+.+.-.... .....||.|..+
T Consensus 10 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred ccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 3568899999887631112 3888999999997665321 235789999987
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.94 E-value=0.0027 Score=47.21 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=35.2
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCC--CCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPN--TTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~--~s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-.--... |...+|..|+.+.-... ......||.|..+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred ccCCCCcCCChhhCcceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 35679999998876422333 78899999998754321 1225789999986
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.0048 Score=45.71 Aligned_cols=47 Identities=19% Similarity=0.471 Sum_probs=34.6
Q ss_pred CCCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 53 CCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 53 ~~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
..+..+||||+..|-.--... |...+|.+|+.+.-... ..||.|+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~----~~CP~Cr~~ 58 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLP-CKHVFCYLCVKGASWLG----KRCALCRQE 58 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEET-TTEEEEHHHHHHCTTCS----SBCSSSCCB
T ss_pred CCCCCCCccCCcccCCCEEcc-CCCHHHHHHHHHHHHCC----CcCcCcCch
Confidence 346689999998876422233 77889999998865432 589999986
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.90 E-value=0.0052 Score=45.92 Aligned_cols=49 Identities=22% Similarity=0.484 Sum_probs=34.8
Q ss_pred CCCCCcCCcccccCCC--CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 53 CCDLEECPICFLYYPS--LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 53 ~~~~~ECPICFlyYp~--lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
..+..+||||+..|-. .-...=|...+|.+|+.+.-..+ ..||+|+.+-
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~ 62 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSL 62 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCcc
Confidence 3457899999988762 11112378889999998875432 4799999873
No 9
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=95.70 E-value=0.0033 Score=48.38 Aligned_cols=50 Identities=24% Similarity=0.459 Sum_probs=36.9
Q ss_pred CCCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 53 CCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 53 ~~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
..+...||||+-+|-.--...||...+|..|..+.-... ....||.|..+
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~ 59 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES--DEHTCPTCHQN 59 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC--TTCCCTTTCCS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc--CCCcCcCCCCc
Confidence 346688999998776433456799999999998764211 23589999987
No 10
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.69 E-value=0.0039 Score=46.78 Aligned_cols=50 Identities=24% Similarity=0.481 Sum_probs=38.3
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
.+...||||+..|-.--...+|...+|..|..+.-... ....||.|..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES--DEHTCPTCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCSS
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCcC
Confidence 35679999998887544467899999999998776431 235899999963
No 11
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.56 E-value=0.0044 Score=46.05 Aligned_cols=50 Identities=20% Similarity=0.590 Sum_probs=34.6
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCC--CCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPN--TTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~--~s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-.--... |...+|.+|+.++-... ......||+|...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCS
T ss_pred cCCCCCCCCCcccCCceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCc
Confidence 35689999998886422223 78889999998764310 0124689999987
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=95.53 E-value=0.0042 Score=43.29 Aligned_cols=46 Identities=22% Similarity=0.574 Sum_probs=33.8
Q ss_pred CCCcCCcccccCCC---CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPS---LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~---lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+..+||||+..|.. .-...-|...+|.+|+.+.-... ..||+|..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 56789999988742 22333478899999998775432 579999875
No 13
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.28 E-value=0.0085 Score=47.23 Aligned_cols=47 Identities=34% Similarity=0.810 Sum_probs=33.8
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
..+||||+..|-.--.. -|...+|.+|+.+.-.... .+..||.|..+
T Consensus 21 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~ 67 (112)
T 1jm7_A 21 ILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKK-GPSQCPLCKND 67 (112)
T ss_dssp HTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSS-SSCCCTTTSCC
T ss_pred CCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCC-CCCCCcCCCCc
Confidence 46899999887632122 4899999999987754321 23689999986
No 14
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.16 E-value=0.011 Score=47.50 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=33.4
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
...||||+-+|-.--.. =|...+|..|+.+.-.. ....||.|...
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK---ASLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT---TTSBCTTTCCB
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhH---CcCCCCCCCcc
Confidence 46899999777632122 38889999999887753 13689999986
No 15
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.07 E-value=0.008 Score=44.47 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=34.9
Q ss_pred CCCCcCCcccccCCC---CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCCce
Q 015359 54 CDLEECPICFLYYPS---LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYA 107 (408)
Q Consensus 54 ~~~~ECPICFlyYp~---lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~f~ 107 (408)
....+||||+..|.. +.... |...+|.+|+.+.-... ..||+|..+-+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 346799999998863 22223 78889999998765432 379999987543
No 16
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=94.95 E-value=0.0098 Score=46.48 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=34.2
Q ss_pred CCCCCcCCcccccCCC---CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 53 CCDLEECPICFLYYPS---LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 53 ~~~~~ECPICFlyYp~---lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
..+..+||||+..|-. .-... |...+|..|+.+.-.. ...||.|..+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 3466889999977753 33334 8889999999876543 2479999875
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.95 E-value=0.0097 Score=44.98 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=35.4
Q ss_pred CCCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 53 CCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 53 ~~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
..+..+||||+-.|-.-- ..=|...+|..|+.+.-.. ...||.|..+-
T Consensus 12 ~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPV-VTKCRHYFCESCALEHFRA----TPRCYICDQPT 59 (81)
T ss_dssp CCCCSBCSSSCSBCCSEE-ECTTSCEEEHHHHHHHHHH----CSBCSSSCCBC
T ss_pred CCCCCCCcCCCchhcCee-EccCCCHhHHHHHHHHHHC----CCcCCCcCccc
Confidence 345679999998876421 2347889999999887542 34799999874
No 18
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.92 E-value=0.029 Score=40.31 Aligned_cols=43 Identities=21% Similarity=0.598 Sum_probs=32.3
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+...||||+..|-.--... |....|..|..+. ...||.|...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~-------~~~CP~Cr~~ 46 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLP-CLHTLCSGCLEAS-------GMQCPICQAP 46 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCST-TSCCSBTTTCSSS-------SSSCSSCCSS
T ss_pred ccCCCceEeCCccCCeEEcC-CCCcccHHHHccC-------CCCCCcCCcE
Confidence 35678999998887432233 7889999998771 3579999886
No 19
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.89 E-value=0.02 Score=45.49 Aligned_cols=46 Identities=20% Similarity=0.603 Sum_probs=35.0
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+-.|-.--....|...+|..|+.+.-... ..||.|...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~ 59 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS----KYCPICDVQ 59 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC----SBCTTTCCB
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC----CcCcCCCcc
Confidence 4578999998876422223789999999998876532 689999987
No 20
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.88 E-value=0.0089 Score=46.78 Aligned_cols=45 Identities=31% Similarity=0.674 Sum_probs=34.2
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
..+||||+..|-.--....|...+|..|..+.-.. ...||.|..+
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 66 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVT 66 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCB
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCc
Confidence 47899999887742122368999999999877653 2589999986
No 21
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.83 E-value=0.0073 Score=51.46 Aligned_cols=46 Identities=22% Similarity=0.707 Sum_probs=34.3
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
...||||+-+|-.--....|...+|.+|+.+.-... ...||.|..+
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~ 99 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---NKECPTCRKK 99 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCB
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCc
Confidence 458999998876422223799999999998875431 3579999987
No 22
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.83 E-value=0.039 Score=38.56 Aligned_cols=46 Identities=22% Similarity=0.564 Sum_probs=32.2
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFC 101 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC 101 (408)
.+..+||||+..|-.--... |...+|..|+.+.-.. ......||.|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~-~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIE-CGHNFCKACITRWWED-LERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCS-SCCCCCHHHHHHHTTS-SCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCC-CCCccCHHHHHHHHHh-cCCCCCCCCC
Confidence 45689999998877422233 7888999999887432 1134689998
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.73 E-value=0.0087 Score=43.81 Aligned_cols=45 Identities=27% Similarity=0.622 Sum_probs=34.2
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+-.|-. ...=|...+|.+|..+.... ...||.|+.+
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 57 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDR----HRNCPICRLQ 57 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCC----CSSCHHHHHC
T ss_pred CCCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHC----cCcCCCcCCc
Confidence 456899999988776 33336777999999887652 4689999865
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=94.72 E-value=0.031 Score=46.63 Aligned_cols=44 Identities=23% Similarity=0.653 Sum_probs=32.4
Q ss_pred CcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 57 EECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 57 ~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
..||||+-+|-.- +.--|...+|..|..+.-.. ...||.|..+-
T Consensus 54 ~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIEA-VTLNCAHSFCSYCINEWMKR----KIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSSE-EEETTSCEEEHHHHHHHTTT----CSBCTTTCCBC
T ss_pred CCCcccCcccCCc-eECCCCCCccHHHHHHHHHc----CCcCCCCCCcC
Confidence 5799999887632 22347889999999876543 35799999873
No 25
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.57 E-value=0.02 Score=43.23 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=30.7
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
..+||||+-.+...-...|-..-.|.+|..++ ..||+|+.+
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~ 65 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTV 65 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC--------SBCTTTCCB
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC--------CCCccCCce
Confidence 35799999887754445665555999998543 479999976
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.51 E-value=0.014 Score=42.31 Aligned_cols=46 Identities=24% Similarity=0.537 Sum_probs=33.3
Q ss_pred CCcCCcccc-cCCCCc---cccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 56 LEECPICFL-YYPSLN---RSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFl-yYp~lN---~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
...||||+- +|..-. ...=|...+|.+|..++... ....||.|..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 52 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTP 52 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCc
Confidence 468999999 776321 23348889999999888321 14689999876
No 27
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.49 E-value=0.015 Score=42.40 Aligned_cols=46 Identities=28% Similarity=0.597 Sum_probs=32.3
Q ss_pred CCCCcCCcccccCCC---CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPS---LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~---lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-. .-... |...+|..|+.+.-..+ ..||+|+.+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~----~~CP~Cr~~ 60 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITN----KKCPICRVD 60 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHC----SBCTTTCSB
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcC----CCCcCcCcc
Confidence 456899999987641 22223 78889999998764321 359999876
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.38 E-value=0.013 Score=43.55 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=34.3
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-.--...-|....|.+|..+.-.. ...||.|+.+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 59 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIV 59 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcc
Confidence 3467899999887642222368899999999776532 2579999986
No 29
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.35 E-value=0.034 Score=45.05 Aligned_cols=44 Identities=25% Similarity=0.500 Sum_probs=34.0
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+-+|-.--...-|...+|..|..+.-. ..||.|..+
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~ 64 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTP 64 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCB
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCc
Confidence 45789999988764222226899999999988765 579999987
No 30
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.33 E-value=0.0079 Score=43.29 Aligned_cols=47 Identities=28% Similarity=0.668 Sum_probs=34.6
Q ss_pred CCCCcCCcccccCCC--Cc----cccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPS--LN----RSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~--lN----~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-. .+ ...=|...+|.+|+.+.-.. ...||+|..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 467899999988752 11 44457889999999877542 2479999875
No 31
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.33 E-value=0.03 Score=43.33 Aligned_cols=45 Identities=22% Similarity=0.476 Sum_probs=34.8
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCCceE
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAV 108 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~f~V 108 (408)
..+|+||+-.+...-...|=...+|.+|...++ .||+|..+--.+
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC--------cCCCCCchhhCe
Confidence 468999998876655556666679999998774 799999975444
No 32
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=94.26 E-value=0.012 Score=42.79 Aligned_cols=50 Identities=26% Similarity=0.619 Sum_probs=35.0
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCCceE
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAV 108 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~f~V 108 (408)
...+||||+..|-.--...=|...+|..|..+.-.. ...||.|+.+--.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHhh
Confidence 457899999887532133347888999999876432 24799999875444
No 33
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=94.21 E-value=0.005 Score=43.72 Aligned_cols=46 Identities=26% Similarity=0.693 Sum_probs=33.8
Q ss_pred CCCcCCcccccCCCC------ccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSL------NRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~l------N~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+..+||||+..|-.- -...=|...+|.+|+.+.-.. ...||.|..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 53 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 53 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCcc
Confidence 457899999887531 144457888999999876542 2489999876
No 34
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.02 E-value=0.027 Score=40.93 Aligned_cols=46 Identities=22% Similarity=0.574 Sum_probs=34.2
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+..+||||+..|-.--. .-|....|.+|+.+.-.. ....||.|..+
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 59 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSS---SSPKCTACQES 59 (66)
T ss_dssp CCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTT---SSCCCTTTCCC
T ss_pred cCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHh---CcCCCCCCCcC
Confidence 56789999988763212 258889999999987641 24579999876
No 35
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.93 E-value=0.048 Score=41.19 Aligned_cols=44 Identities=20% Similarity=0.508 Sum_probs=34.1
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
.+..+|+||+-.....-..-|=..-+|..|...+ ..||+|.++-
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i 56 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF--------QQCPMCRQFV 56 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC--------SSCTTTCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC--------CCCCCCCcch
Confidence 4678999999876665555666666999999854 3799999874
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.76 E-value=0.027 Score=40.49 Aligned_cols=46 Identities=24% Similarity=0.582 Sum_probs=32.6
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFC 101 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC 101 (408)
.+..+||||+-.|-.--.. =|...+|.+|+.+.-... .....||.|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETS-CGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHC-SSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcC-CCCCcCcCC
Confidence 4568999999887742222 478889999998876421 124689998
No 37
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=93.18 E-value=0.0094 Score=43.37 Aligned_cols=47 Identities=26% Similarity=0.641 Sum_probs=34.5
Q ss_pred CCCCcCCcccccCCC-C-----ccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPS-L-----NRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~-l-----N~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-. . -...-|...+|.+|+.+.-... ..||.|..+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 60 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKK 60 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCc
Confidence 356889999988752 1 1455688999999998764321 479999876
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=92.99 E-value=0.027 Score=45.87 Aligned_cols=46 Identities=17% Similarity=0.470 Sum_probs=33.4
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+-+|-.--. -=|...+|..|..+.-.. ....||.|..+
T Consensus 51 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 96 (124)
T 3fl2_A 51 ETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRA---QVFSCPACRYD 96 (124)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHT---TCCBCTTTCCB
T ss_pred cCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhH---CcCCCCCCCcc
Confidence 34689999988763111 248999999999876542 23589999987
No 39
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.93 E-value=0.02 Score=42.68 Aligned_cols=46 Identities=22% Similarity=0.594 Sum_probs=33.1
Q ss_pred CCCCcCCcccccCCC---CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPS---LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~---lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-. +-... |..-+|.+|+.+.-..+ ..||.|+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~----~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKAN----RTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHC----SSCTTTCCC
T ss_pred CCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcC----CcCcCcCCc
Confidence 356789999988763 22233 78889999998764322 379999875
No 40
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=92.88 E-value=0.054 Score=40.94 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=30.8
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
..+|+||+-.+-..-...|-..-+|..|..++ ..||+|+++
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~ 64 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTV 64 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCB
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcC
Confidence 36899999887653334555555999998877 479999986
No 41
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.61 E-value=0.024 Score=44.25 Aligned_cols=50 Identities=24% Similarity=0.513 Sum_probs=35.4
Q ss_pred CCCcCCcccccCCCCccc--cccCCCcchhhhhcccCC----CCCCCcCCCC--CCCC
Q 015359 55 DLEECPICFLYYPSLNRS--RCCMKGICTECFLQMKNP----NTTRPTQCPF--CKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~S--rCC~q~ICTECflQikr~----~~s~p~~CPf--C~~~ 104 (408)
+..+|||||-.|+.-+.. .-|....|.+|..+.-.. ....+..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999998854433 358999999997654321 1124689999 9875
No 42
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=92.47 E-value=0.03 Score=41.47 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=35.9
Q ss_pred CCCCcCCcccccCCC--CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 54 CDLEECPICFLYYPS--LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 54 ~~~~ECPICFlyYp~--lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
....+|+||+-.... +-...|=....|.+|..+++.. ...||.|..+-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i 54 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEI 54 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchh
Confidence 456799999987653 3333676667999999999864 25799999874
No 43
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=92.31 E-value=0.032 Score=44.37 Aligned_cols=49 Identities=33% Similarity=0.564 Sum_probs=32.8
Q ss_pred CCcCCcccccCCC-C----------------ccccccCCCcchhhhhcccCC-CCCCCcCCCCCCCC
Q 015359 56 LEECPICFLYYPS-L----------------NRSRCCMKGICTECFLQMKNP-NTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~-l----------------N~SrCC~q~ICTECflQikr~-~~s~p~~CPfC~~~ 104 (408)
..+||||+-.|-. . -+..-|..-+|.+|+.+.-.. .......||.|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 3589999988742 1 113458899999999876521 11224589999975
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=91.64 E-value=0.04 Score=43.66 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=34.1
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+-+|-.--...-|....|..|..+.-... ...||.|..+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~ 67 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAP 67 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCB
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCc
Confidence 3578999998876422215689999999998764321 1589999987
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=91.34 E-value=0.054 Score=46.44 Aligned_cols=46 Identities=17% Similarity=0.473 Sum_probs=33.9
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+..|-.--. --|...+|..|..+.-.. ....||.|..+
T Consensus 77 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~ 122 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKA---QVFSCPACRHD 122 (150)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHT---TCCBCTTTCCB
T ss_pred cCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHh---CCCcCCCCCcc
Confidence 35789999987763111 357889999999887653 23579999987
No 46
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=91.33 E-value=0.1 Score=38.85 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=34.8
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+...||||+..|-.- ..--|....|..|..+.-.. ....||.|..+
T Consensus 6 ~~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~---~~~~CP~C~~~ 52 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDA---GHKTCPKSQET 52 (78)
T ss_dssp SSSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTT---TCCBCTTTCCB
T ss_pred cccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHH---CcCCCCCCcCC
Confidence 4567899999877631 12259999999999877653 14579999986
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=90.02 E-value=0.089 Score=38.97 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=34.4
Q ss_pred CCCcCCcccccCCCCc--cccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLN--RSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN--~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
+..+|+||+-.....- ..-|=....|.+|..+++.. ...||+|.++-
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcch
Confidence 4578999998866422 22555555899999999863 24799999874
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=89.14 E-value=0.064 Score=43.44 Aligned_cols=46 Identities=22% Similarity=0.600 Sum_probs=32.8
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+..|-.--... |...+|..|+.+.-... ...||.|..+
T Consensus 17 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~ 62 (118)
T 3hct_A 17 SKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDA---GHKCPVDNEI 62 (118)
T ss_dssp GGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHH---CSBCTTTCCB
T ss_pred CCCCCCcCChhhcCeEECC-cCChhhHHHHHHHHhhC---CCCCCCCCCC
Confidence 4578999998876311123 89999999998765421 1279999876
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=87.71 E-value=0.22 Score=40.10 Aligned_cols=46 Identities=11% Similarity=-0.069 Sum_probs=33.3
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+..-||||+.++-.==...|+....|-.|..+.-.. ...||+|.++
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~ 66 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSP 66 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSB
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----CCCCCCCCCC
Confidence 457899999877532223455599999998877653 2479999876
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=87.33 E-value=0.13 Score=41.23 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=32.6
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
...||||+..|-.--.+ =|...+|..|+.+.-... ...||.|..+
T Consensus 23 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~ 67 (116)
T 1rmd_A 23 SISCQICEHILADPVET-SCKHLFCRICILRCLKVM---GSYCPSCRYP 67 (116)
T ss_dssp HTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHT---CSBCTTTCCB
T ss_pred CCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHC---cCcCCCCCCC
Confidence 46899999887631112 389999999998765421 2479999987
No 51
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.66 E-value=0.26 Score=48.07 Aligned_cols=45 Identities=22% Similarity=0.540 Sum_probs=32.4
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCCce
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYA 107 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~f~ 107 (408)
+...||||+-.+-..-...|=....|..|...+ ..||.|..+--.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 357899999887653333454444999999877 379999987433
No 52
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=86.58 E-value=0.36 Score=46.47 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=36.1
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCC--CCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPF--CKTA 104 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPf--C~~~ 104 (408)
..-||||+.+|-.==+++.|....|-.|+.+.-... ....||- |...
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~ 229 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQV 229 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCE
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCc
Confidence 467999999886422456899999999999876532 3468999 9984
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=86.29 E-value=0.2 Score=44.47 Aligned_cols=47 Identities=9% Similarity=-0.128 Sum_probs=32.9
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+...||||+..+-.==.+. |....|..|....-... +..||.|..+
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~---~~~cP~~~~~ 252 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRV---GHFNPVTRSP 252 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHT---CSSCTTTCCC
T ss_pred CcccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHC---CCCCcCCCCC
Confidence 35678999998876411223 79999999987665321 2249999976
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.28 E-value=1.6 Score=33.24 Aligned_cols=43 Identities=19% Similarity=0.421 Sum_probs=27.7
Q ss_pred cCCcccccCCC--Cccccc-cCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 58 ECPICFLYYPS--LNRSRC-CMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 58 ECPICFlyYp~--lN~SrC-C~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.||||...|+. ..+... |...++.+|..+--..+ ..||.|+++
T Consensus 28 ~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 73 (81)
T 2ecl_A 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQD 73 (81)
T ss_dssp CCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCB
T ss_pred cCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCC
Confidence 34444444442 233444 88999999988764432 379999987
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=85.00 E-value=0.18 Score=40.01 Aligned_cols=48 Identities=27% Similarity=0.628 Sum_probs=35.2
Q ss_pred CCCCcCCcccccCCC------CccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 54 CDLEECPICFLYYPS------LNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 54 ~~~~ECPICFlyYp~------lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
.+..+||||+..|-. .-+..=|....|.+|..+.-.. ...||.|...-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 58 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 58 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcC
Confidence 356899999988742 1144558889999999887543 23899999863
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=83.64 E-value=0.25 Score=49.50 Aligned_cols=46 Identities=24% Similarity=0.618 Sum_probs=33.0
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
..+||||+-.+...-. .-|....|..|..+.... ....||.|..+-
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES---EGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH---TCSBCTTTCCBC
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc---CCCCCCCCCCcc
Confidence 3799999887664323 346777899999877542 235899999873
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=81.58 E-value=0.56 Score=36.44 Aligned_cols=45 Identities=13% Similarity=-0.002 Sum_probs=32.1
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+-++-.==.+. |....|-.|..+.-.. ...||+|..+
T Consensus 13 ~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~----~~~cP~~~~~ 57 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLN----SPTDPFNRQM 57 (85)
T ss_dssp TTTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred hheECcccCchhcCCeECC-CCCEECHHHHHHHHhc----CCCCCCCcCC
Confidence 4678999998775311122 7999999997766542 2479999876
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=81.34 E-value=0.55 Score=37.87 Aligned_cols=45 Identities=13% Similarity=-0.001 Sum_probs=32.7
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+-++-.==.+. |....|-.|..+.-.. ...||+|..+
T Consensus 28 ~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~----~~~cP~~~~~ 72 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLN----SPTDPFNRQT 72 (100)
T ss_dssp TTTBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTS----CSBCSSSCCB
T ss_pred HhhCCcCccCcccCCeECC-CCCEEchHHHHHHHHc----CCCCCCCCCC
Confidence 4678999998875311122 7899999998777653 2579999986
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=80.27 E-value=0.3 Score=41.56 Aligned_cols=46 Identities=22% Similarity=0.584 Sum_probs=32.7
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+.+|-.--.+ =|...+|..|+.+.-... ...||.|..+
T Consensus 17 ~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~ 62 (170)
T 3hcs_A 17 SKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDA---GHKCPVDNEI 62 (170)
T ss_dssp GGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH---CSBCTTTCCB
T ss_pred CCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHhC---CCCCCCCccC
Confidence 457899999887631112 388999999998875321 1389999865
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=78.66 E-value=0.23 Score=42.22 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=34.1
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...||||+..+-.- +..-|....|..|+.+.-.. ....||.|..+
T Consensus 30 ~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~ 75 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSS---GPQNCAACVHE 75 (141)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGG---SCEECHHHHHT
T ss_pred cCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhc---CCCCCCCCCCc
Confidence 457899999876531 22368999999999987542 23589999886
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=77.23 E-value=0.63 Score=46.89 Aligned_cols=51 Identities=27% Similarity=0.597 Sum_probs=31.3
Q ss_pred CCCCcCCcccccCCC---Cccccc----cCCCcchhhhhcccCC-CCC------CCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPS---LNRSRC----CMKGICTECFLQMKNP-NTT------RPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~---lN~SrC----C~q~ICTECflQikr~-~~s------~p~~CPfC~~~ 104 (408)
....||+||+-++-. +-.-.| |.+.+-..|...--+. ..+ --..||||..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 357899999988763 443344 5666667776552221 110 12479999985
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.08 E-value=1.8 Score=33.75 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=35.7
Q ss_pred CCCCCCcCCCCCcCCcccccCC--CCccccccC----CCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 46 YPGDEDCCCDLEECPICFLYYP--SLNRSRCCM----KGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 46 ypg~ed~~~~~~ECPICFlyYp--~lN~SrCC~----q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
|-...+...+..+|+||+.-|- .--..-|-+ +-+..+|..+--... ....||.|+..
T Consensus 5 ~s~~s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~ 67 (80)
T 2d8s_A 5 SSGTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYE 67 (80)
T ss_dssp CCCCCCCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCB
T ss_pred cCCCCCCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCe
Confidence 3333343456789999997764 222455632 788888986653221 12589999987
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.72 E-value=0.59 Score=36.79 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=33.8
Q ss_pred CCCcCCcccccCCCCccccccCCCcchhhhhcccCCC--CCCCcCCCC--CCCC
Q 015359 55 DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPN--TTRPTQCPF--CKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~--~s~p~~CPf--C~~~ 104 (408)
....||||+.+|-.==.+.-|....|-.|..+.-..+ ...+..||. |...
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3467999998876422233589999999988765321 123578999 8754
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.63 E-value=4 Score=31.93 Aligned_cols=51 Identities=22% Similarity=0.501 Sum_probs=29.9
Q ss_pred CCcCCCCCcCCcccccCCCCccccc--cCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 50 EDCCCDLEECPICFLYYPSLNRSRC--CMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 50 ed~~~~~~ECPICFlyYp~lN~SrC--C~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+.+..+..+|.||+..+= .--+| |...+=..|+.+--+.. ....||.|+++
T Consensus 9 ~~y~~~i~~C~IC~~~i~--~g~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~~ 61 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 61 (74)
T ss_dssp CCCSSSSCBCSSSCCBCS--SSEECSSSCCEECHHHHHHHSTTC--SSCCCTTTCSC
T ss_pred hhccCCCCcCcchhhHcc--cCCccCCCCchhhHHHHHHHHHhc--CCCCCCCCcCc
Confidence 333456799999997653 22345 44444455655433322 12579999976
No 65
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=65.74 E-value=5.1 Score=32.70 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHHHHHhhhhccCC
Q 015359 377 VPESFEEQMMLAMAASLAEARPMS 400 (408)
Q Consensus 377 vPeSFEEQMMLAMAvSLAEaramt 400 (408)
+.++|+|+.-.||++||-|.....
T Consensus 7 ~~~~eDeDLkrAieLSL~Es~~~~ 30 (81)
T 1q0v_A 7 TPEDEEELIRKAIELSLKESRNSA 30 (81)
T ss_dssp CCSSHHHHHHHHHHHHHHCCCCCS
T ss_pred cccCchHHHHHHHHHhHHHHcCCC
Confidence 478999999999999999998774
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=64.82 E-value=1.5 Score=39.47 Aligned_cols=47 Identities=9% Similarity=-0.155 Sum_probs=32.3
Q ss_pred CCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..-||||+-.+-. -+.-.|....|-.|....-..+ ...||+|..+
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~ 150 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRV---GHFDPVTRSP 150 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCB
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhC---CCCCCCCcCC
Confidence 356789999977652 1112589999999987764322 1259999976
No 67
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.81 E-value=1.2 Score=41.03 Aligned_cols=33 Identities=24% Similarity=0.718 Sum_probs=21.3
Q ss_pred CCcchhhhhcccCCC------CCCCcCCCCCCCCCceEEEcCC
Q 015359 77 KGICTECFLQMKNPN------TTRPTQCPFCKTANYAVEYRGV 113 (408)
Q Consensus 77 q~ICTECflQikr~~------~s~p~~CPfC~~~~f~V~Y~g~ 113 (408)
.+.|+.||+.|.+.. ..+.+.||+|.. |-|...
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgR----IL~~~~ 236 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCGR----ILYAEG 236 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCC----EEECSC
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCCe----eEEeCc
Confidence 456778887776421 235689999984 555443
No 68
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=61.70 E-value=4.6 Score=34.26 Aligned_cols=27 Identities=26% Similarity=0.716 Sum_probs=18.3
Q ss_pred CcchhhhhcccCCCCCCCcCCCCCCCCC
Q 015359 78 GICTECFLQMKNPNTTRPTQCPFCKTAN 105 (408)
Q Consensus 78 ~ICTECflQikr~~~s~p~~CPfC~~~~ 105 (408)
+.|-.|-.++ +....+|..||.|+..+
T Consensus 68 ~~C~~CG~~F-~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVF-KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBC-CCCSSCCSSCSSSCCCC
T ss_pred cChhhCcCee-cccCCCCCCCcCCCCCc
Confidence 4566666666 22334688999999875
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=58.82 E-value=5.8 Score=32.43 Aligned_cols=46 Identities=17% Similarity=0.362 Sum_probs=30.4
Q ss_pred CCCcCCcccccCCCC-----------------ccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSL-----------------NRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~l-----------------N~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+...|+||+..|-.. .+.-=|...++..|..+--.. ...||.|..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 456788887665421 111237888999998775432 2479999987
No 70
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=52.34 E-value=1.6 Score=34.44 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=32.6
Q ss_pred CCCCcCCcccccCCCC------ccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 54 CDLEECPICFLYYPSL------NRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 54 ~~~~ECPICFlyYp~l------N~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
.+..+||||+..|-.. ....=|....|..|....-... ..||.|..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 122 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKK 122 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC----CCCCCCCCc
Confidence 4578999999876521 1222378889999987654321 379999876
No 71
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=47.26 E-value=23 Score=29.46 Aligned_cols=53 Identities=25% Similarity=0.552 Sum_probs=39.8
Q ss_pred CCCCcCCcccccCC-CCccccccCCCcchhhhhcc------------cCCCCCCCcCCCCCCCCCc
Q 015359 54 CDLEECPICFLYYP-SLNRSRCCMKGICTECFLQM------------KNPNTTRPTQCPFCKTANY 106 (408)
Q Consensus 54 ~~~~ECPICFlyYp-~lN~SrCC~q~ICTECflQi------------kr~~~s~p~~CPfC~~~~f 106 (408)
.+.+.|+||-.|=- .|+.=|=|..-.=+.|+-++ .++++...-.||+|.+-+.
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~l 78 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINL 78 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCS
T ss_pred CCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhh
Confidence 46788999987744 37776666666667888887 4566778899999987764
No 72
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=35.81 E-value=9.5 Score=32.02 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=1.0
Q ss_pred CCCcCCcccccCCCC------c----------cc-cccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 55 DLEECPICFLYYPSL------N----------RS-RCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 55 ~~~ECPICFlyYp~l------N----------~S-rCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
+.+.|+||+-.|-.. | .. -=|...++.+|..+--.. ...||.|..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 109 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCe
Confidence 457899999877420 0 10 137778888887764332 2479999987
No 73
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.79 E-value=35 Score=23.15 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=27.0
Q ss_pred CcCCcccccCCC---CccccccCCCcchhhhhcccCC---------CC-CCCcCCCCC
Q 015359 57 EECPICFLYYPS---LNRSRCCMKGICTECFLQMKNP---------NT-TRPTQCPFC 101 (408)
Q Consensus 57 ~ECPICFlyYp~---lN~SrCC~q~ICTECflQikr~---------~~-s~p~~CPfC 101 (408)
-.|++|-..|.. |.. =..-.|..|-..+... +. .+|-.|+.|
T Consensus 19 ~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C 73 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG 73 (73)
T ss_dssp EECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred eeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence 579999877772 544 2344788886655542 22 357788887
No 74
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.83 E-value=18 Score=28.07 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=19.8
Q ss_pred CcchhhhhcccCCCCCCCcCCCCCCCCCceEEEc
Q 015359 78 GICTECFLQMKNPNTTRPTQCPFCKTANYAVEYR 111 (408)
Q Consensus 78 ~ICTECflQikr~~~s~p~~CPfC~~~~f~V~Y~ 111 (408)
-||.+|-..+.- +...+++||+|- |.|.|+
T Consensus 22 Y~C~~Cg~~~~l-~~~~~iRC~~CG---~RILyK 51 (63)
T 3h0g_L 22 YLCADCGARNTI-QAKEVIRCRECG---HRVMYK 51 (63)
T ss_dssp CBCSSSCCBCCC-CSSSCCCCSSSC---CCCCBC
T ss_pred EECCCCCCeeec-CCCCceECCCCC---cEEEEE
Confidence 478888665542 234679999995 456664
No 75
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=32.03 E-value=23 Score=23.60 Aligned_cols=18 Identities=44% Similarity=0.506 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhhccC
Q 015359 382 EEQMMLAMAASLAEARPM 399 (408)
Q Consensus 382 EEQMMLAMAvSLAEaram 399 (408)
||-.-||+|+|+.||-++
T Consensus 4 eEEl~LAlAlS~sEae~~ 21 (26)
T 2d3g_P 4 EEELQLALALSQSEAEEK 21 (26)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455778888888887543
No 76
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=29.45 E-value=28 Score=28.31 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.2
Q ss_pred cChhHHHHHHHHHHHHHhhc
Q 015359 207 LDLEDIMVMEAIWLSIQENG 226 (408)
Q Consensus 207 ~dlEdiMvmEAIwlSiQe~~ 226 (408)
..+=+|.|.|||+|++++-.
T Consensus 42 aeyl~iFV~EAv~RA~~~a~ 61 (84)
T 4dra_E 42 VELLKVFVVEAAVRGVRQAQ 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999998754
No 77
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=28.72 E-value=18 Score=38.45 Aligned_cols=31 Identities=35% Similarity=0.959 Sum_probs=22.5
Q ss_pred CCcCCcccccCCCCccccccCCC-------------cchhhhhcccCC
Q 015359 56 LEECPICFLYYPSLNRSRCCMKG-------------ICTECFLQMKNP 90 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~-------------ICTECflQikr~ 90 (408)
..-||+||+- -.+||+..+ +|.+||=-+-|.
T Consensus 13 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 13 TATCPVCFAS----ASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CCSSCCBSCC----CSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred cccccHHHHH----HHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 4679999986 346777643 799999866544
No 78
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=27.96 E-value=27 Score=26.52 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=15.8
Q ss_pred cccChhHHHHHHHHHHHHHh
Q 015359 205 FDLDLEDIMVMEAIWLSIQE 224 (408)
Q Consensus 205 ~d~dlEdiMvmEAIwlSiQe 224 (408)
.|++=||-=|-.||.||||-
T Consensus 21 ~dmEDeeadLrrAiqLSmQG 40 (52)
T 2klz_A 21 IDMEDEEADLRRAIQLSMQG 40 (52)
T ss_dssp HCCSSSHHHHHHHHHHHHTT
T ss_pred hccchhHHHHHHHHHHHhhc
Confidence 45666666889999999984
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=27.26 E-value=71 Score=26.98 Aligned_cols=46 Identities=20% Similarity=0.560 Sum_probs=35.2
Q ss_pred CCCCCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359 53 CCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA 104 (408)
Q Consensus 53 ~~~~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~ 104 (408)
...-.-|-.|.+..- |--+|.+.-+|--|.--|-+- .-.||.|+.+
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~p 70 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV----SNRCPICKMP 70 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS----SSEETTTTEE
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhh----ccCCcccCCc
Confidence 345688999987644 566899999999998666542 3489999976
No 80
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.88 E-value=22 Score=27.81 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=18.8
Q ss_pred CcchhhhhcccCCCCCCCcCCCCCCCCCceEEEc
Q 015359 78 GICTECFLQMKNPNTTRPTQCPFCKTANYAVEYR 111 (408)
Q Consensus 78 ~ICTECflQikr~~~s~p~~CPfC~~~~f~V~Y~ 111 (408)
-||.+|-..+..- ...++.||.|-. .|.|+
T Consensus 29 Y~C~~CG~~~e~~-~~d~irCp~CG~---RILyK 58 (70)
T 1twf_L 29 YICAECSSKLSLS-RTDAVRCKDCGH---RILLK 58 (70)
T ss_dssp EECSSSCCEECCC-TTSTTCCSSSCC---CCCBC
T ss_pred EECCCCCCcceeC-CCCCccCCCCCc---eEeEe
Confidence 3788888884332 234678998865 35553
No 81
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=25.85 E-value=19 Score=26.95 Aligned_cols=27 Identities=30% Similarity=0.622 Sum_probs=18.2
Q ss_pred CcCCcccccCCCCccccccCCCcchhhhhcccC
Q 015359 57 EECPICFLYYPSLNRSRCCMKGICTECFLQMKN 89 (408)
Q Consensus 57 ~ECPICFlyYp~lN~SrCC~q~ICTECflQikr 89 (408)
.|=|.|-+| =+.|+ ||.|+|||-.-++
T Consensus 14 CeTPnCpF~-mSVnT-----QP~CHEC~errq~ 40 (49)
T 2eqg_A 14 CETPNCPFF-MSVNT-----QPLCHECSERRQK 40 (49)
T ss_dssp CSSTTCCSB-CCTTT-----TTSCHHHHHHHHT
T ss_pred ecCCCCCeE-EEecC-----ccchHHHHHHHhh
Confidence 344666544 45664 9999999975544
No 82
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=23.78 E-value=42 Score=36.15 Aligned_cols=50 Identities=26% Similarity=0.690 Sum_probs=38.9
Q ss_pred CCCCcCCccc----------ccCCCCcccccc-------------------CCCcchhhhhcccCCCC----CCCcCCCC
Q 015359 54 CDLEECPICF----------LYYPSLNRSRCC-------------------MKGICTECFLQMKNPNT----TRPTQCPF 100 (408)
Q Consensus 54 ~~~~ECPICF----------lyYp~lN~SrCC-------------------~q~ICTECflQikr~~~----s~p~~CPf 100 (408)
.|..-||-|. ..||-+|-|.|= .-+.|.+|--.-+.|.. .+|+.||-
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 4778999995 247889988885 35789999988776543 57999999
Q ss_pred CCC
Q 015359 101 CKT 103 (408)
Q Consensus 101 C~~ 103 (408)
|--
T Consensus 189 CGP 191 (761)
T 3vth_A 189 CGP 191 (761)
T ss_dssp TSC
T ss_pred cCC
Confidence 964
No 83
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.66 E-value=38 Score=24.45 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=11.4
Q ss_pred CCCCCCCCceEEEcCCC
Q 015359 98 CPFCKTANYAVEYRGVK 114 (408)
Q Consensus 98 CPfC~~~~f~V~Y~g~k 114 (408)
|-.|...+...+|..+.
T Consensus 20 C~~C~~~~~~C~y~~~~ 36 (70)
T 1zme_C 20 CQKCVTSNAICEYLEPS 36 (70)
T ss_dssp CHHHHHTTCCCCCCCCC
T ss_pred CHHHhcCCCCCcCCCCC
Confidence 66777777777776554
No 84
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.98 E-value=51 Score=28.27 Aligned_cols=44 Identities=20% Similarity=0.569 Sum_probs=28.0
Q ss_pred CCcCCcccccCCCCccccccCCCcchhhhhcccCCCCCCCcCCCCCC-CCCceEEE
Q 015359 56 LEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCK-TANYAVEY 110 (408)
Q Consensus 56 ~~ECPICFlyYp~lN~SrCC~q~ICTECflQikr~~~s~p~~CPfC~-~~~f~V~Y 110 (408)
.--||||-.|.-..- .-.||.||..-- .--+|-.|. .+....-|
T Consensus 29 dGkC~iCDs~Vrp~~-----~VrICdeCs~G~------~~~rCIiCg~~~g~~dAY 73 (109)
T 2k0a_A 29 DGKCPICDSYVRPKR-----KVRVCENCSFGK------QAKNCIICNLNVGVNDAF 73 (109)
T ss_dssp TTCCTTTCCCCCCCE-----ECEEEHHHHTSS------TTSBCTTTSSSBCCEECE
T ss_pred CCcccccCCccCCcc-----eEEECCcCCCCC------cCCceEEcCCCCCcccce
Confidence 357999999865321 123999999432 235788888 55444433
No 85
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.97 E-value=51 Score=25.52 Aligned_cols=32 Identities=19% Similarity=0.450 Sum_probs=25.0
Q ss_pred CCCcCCcccccCCCCc---cccccCCCcchhhhhc
Q 015359 55 DLEECPICFLYYPSLN---RSRCCMKGICTECFLQ 86 (408)
Q Consensus 55 ~~~ECPICFlyYp~lN---~SrCC~q~ICTECflQ 86 (408)
+...|.+|..-|--++ +=|.|.+-+|..|--+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4568999999887554 4578999999999755
Done!