BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015361
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 342 bits (877), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 230/343 (67%), Gaps = 2/343 (0%)
Query: 56 NFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGI 115
F AA ++ L+S L L P R + VE + DDG + + G+RVQH+ ARGP KGGI
Sbjct: 12 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 116 RYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH 175
RYHP+V DEV ALA MTWKTAV D+P+GG KGG+ PK+LS +ELERL+R F +I
Sbjct: 72 RYHPDVTLDEVKALAFWMTWKTAVMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 131
Query: 176 DLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRG 234
+IG + DIPAPD+ TNA +AW +D YS GH+ +VTGKP++LGGS GRE ATGRG
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 191
Query: 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADG 293
V + G + T +QGFGNVG +AA LI E G KV+AVSD G + N +G
Sbjct: 192 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 251
Query: 294 IDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFI 353
D+ +L+ +K + G++ + G+ + ELL + D+L+P AL G + NA +KAK +
Sbjct: 252 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 311
Query: 354 IEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
+E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ
Sbjct: 312 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQ 354
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 340 bits (872), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 230/343 (67%), Gaps = 2/343 (0%)
Query: 56 NFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGI 115
F AA ++ L+S L L P R + VE + DDG + + G+RVQH+ ARGP KGGI
Sbjct: 13 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 72
Query: 116 RYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH 175
RYHP+V DEV ALA MTWKTAV ++P+GG KGG+ PK+LS +ELERL+R F +I
Sbjct: 73 RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 132
Query: 176 DLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRG 234
+IG + DIPAPD+ TNA +AW +D YS GH+ +VTGKP++LGGS GRE ATGRG
Sbjct: 133 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 192
Query: 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADG 293
V + G + T +QGFGNVG +AA LI E G KV+AVSD G + N +G
Sbjct: 193 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 252
Query: 294 IDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFI 353
D+ +L+ +K + G++ + G+ + ELL + D+L+P AL G + NA +KAK +
Sbjct: 253 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 312
Query: 354 IEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
+E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ
Sbjct: 313 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQ 355
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/346 (47%), Positives = 224/346 (64%), Gaps = 4/346 (1%)
Query: 55 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGG 114
+ AA+ + + + L P R ++V + DDGS+ + GFRVQ++ ARGP KGG
Sbjct: 11 KQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGG 70
Query: 115 IRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI 174
IR+HPE V ALA MTWKTAV D+PYGG KGG+ C+PKE+S+ E ERL R + + I
Sbjct: 71 IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAI 130
Query: 175 HDLIGIHTDIPAPDMGTNAQTMAWILDEY---SKFHGHSPAVVTGKPIDLGGSLGREAAT 231
+D+I +TDIPAPD+ TN Q MAW++DEY S+ S V+TGKP +GG + R AT
Sbjct: 131 YDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDAT 190
Query: 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKN 290
RG Y G ++ T IQG+GN G + A+++ E G KV+AVSD G + N
Sbjct: 191 ARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYN 250
Query: 291 ADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA 350
DG++ ++LA K KTGS+KDF G ++ ELL E DVL P A+ V+ ++NA ++KA
Sbjct: 251 PDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNIKA 310
Query: 351 KFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
K + E AN PT PEADEIL ++G+ I+PD N+GGVTVSYFEWVQ
Sbjct: 311 KIVAELANGPTTPEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQ 356
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 230/343 (67%), Gaps = 2/343 (0%)
Query: 56 NFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGI 115
F AA ++ L+S L L P R + VE + DDG + + G+RVQH+ ARGP KGGI
Sbjct: 12 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 116 RYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIH 175
RYHP+V DEV ALA MTWKTAV ++P+GG KGG+ PK+LS ELERL+R F ++I
Sbjct: 72 RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQ 131
Query: 176 DLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRG 234
+IG + DIPAPD+ TNA +AW +DEY GH+ +VTGKP++LGGS GRE ATGRG
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRG 191
Query: 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADG 293
V + G + T +QGFGNVG +AA LI E G KV+AVSD G + N +G
Sbjct: 192 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 251
Query: 294 IDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFI 353
D+ +L+ +K + G++ + G+ + ELL + D+L+P AL G + NA +KAK +
Sbjct: 252 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 311
Query: 354 IEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
+E AN PT PEADEILS+RG+ ++PDI AN+GGVTVSYFEWVQ
Sbjct: 312 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQ 354
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 314 bits (805), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 164/347 (47%), Positives = 222/347 (63%), Gaps = 5/347 (1%)
Query: 55 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGG 114
+ AA+ + + + L P R ++V + DDGS+ + GFRVQH+ ARGP KGG
Sbjct: 11 KQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGG 70
Query: 115 IRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI 174
IR+HPE V ALA MTWKTAV D+PYGG KGGI PK+LS+ E ERL R + + I
Sbjct: 71 IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAI 130
Query: 175 HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGREAAT 231
+D+I + DIPAPD+ TN Q MAW++DEY +PA ++TGKP+ +GGSLGR AT
Sbjct: 131 YDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEAT 190
Query: 232 GRGVVYAT-EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVK 289
RG Y EA ++ T IQG+GN G + A+++ E G KV+AVSD G +
Sbjct: 191 ARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIY 250
Query: 290 NADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK 349
N DG++ ++L K++ GS+KDF G ++ ELL E DVL P A+ V+ ++NA ++K
Sbjct: 251 NPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIK 310
Query: 350 AKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
AK + E AN P PEADEIL ++G+ +PD N+GGVTVSYFEWVQ
Sbjct: 311 AKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQ 357
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 153/351 (43%), Positives = 226/351 (64%), Gaps = 2/351 (0%)
Query: 47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
+N +T + A R LG + + P R + V + D+GS+ + G+R QH++
Sbjct: 15 LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74
Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
A GP KGG+R+HPEV+ ++V AL+ MT K +A++PYGG KGGI C P+ +S ELERL
Sbjct: 75 AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134
Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSL 225
+R + + I ++G DIPAPD+ TN+Q MAW++DEYS+ SP +TGKP+ LGGS
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQ 194
Query: 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285
GRE AT +GV E + + G +++ +IQGFGN GS+ A+ +H+ G KVI +SD
Sbjct: 195 GRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN 254
Query: 286 GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENA 345
G + N DG+DI LL +D G + + D + ELL +CD+L+P A+ + +NA
Sbjct: 255 GGLYNPDGLDIPYLLDKRDSFGMVTNL-FTDVITNEELLEKDCDILVPAAISNQITAKNA 313
Query: 346 ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
+++A ++E AN PT +A +IL++RGV ++PDI A++GGVTVSYFEWVQ
Sbjct: 314 HNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQ 364
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 312 bits (799), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/357 (44%), Positives = 220/357 (61%), Gaps = 4/357 (1%)
Query: 44 IIVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQ 103
++ ++ + AA+ + + + L P R ++V I DDGS+ + GFRVQ
Sbjct: 1 MVEIDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQ 60
Query: 104 HDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSEL 163
H+ ARGP KGGIR+HP V ALA MTWK AV D+PYGG KGGI +PKELS E
Sbjct: 61 HNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQ 120
Query: 164 ERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPID 220
ERL R + + ++D+IG TDIPAPD+ TN + M W++DEY + G + V+TGKP+
Sbjct: 121 ERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLS 180
Query: 221 LGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER-GGKVI 279
+GGSLGR AT +G ++ G ++ +QG+GN G + A+L E+ G V+
Sbjct: 181 IGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVV 240
Query: 280 AVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGV 339
AVSD G + N DG+D ++L K + GS+KDF G ++ ELL E DVL P A+ V
Sbjct: 241 AVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEV 300
Query: 340 LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
+ +NA ++KAK + E AN P PEAD+IL ++G+ +PD N+GGVTVSYFEWVQ
Sbjct: 301 ITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQ 357
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 300 bits (769), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 151/352 (42%), Positives = 226/352 (64%), Gaps = 5/352 (1%)
Query: 47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
++ L +T A LG ++ L P R + V+ + DDGS+ + G+R H++
Sbjct: 15 LDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYRA-HND 73
Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
+ GP KGGIR+HP V EV AL+ M+ K + D+PYGG KGGI C P+++S ELERL
Sbjct: 74 SVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERL 133
Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSL 225
+R + + I ++G D+PAPD+ TN+Q MAW++DEYS+ +SP +TGKP+ LGGS
Sbjct: 134 SRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSH 193
Query: 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285
GRE+AT +GV + + G I+ V+QGFGN GS+ A+ +H+ G KV+ +SD
Sbjct: 194 GRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAY 253
Query: 286 GAVKNADGIDIHKLLAHKDKTGSL-KDFDGGDSMEPSELLAHECDVLIPCALGGVLKREN 344
G + + +G+DI LL +D G++ K F+ D++ ELL +CD+L+P A+ + EN
Sbjct: 254 GGLYDPEGLDIDYLLDRRDSFGTVTKLFN--DTITNQELLELDCDILVPAAIENQITEEN 311
Query: 345 AADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
A +++AK ++EAAN PT E +ILS R + ++PD+ A++GGVTVSYFEWVQ
Sbjct: 312 AHNIRAKIVVEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQ 363
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 210/334 (62%), Gaps = 1/334 (0%)
Query: 64 LGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDP 123
LG + L SL P R + V+ + DDGS+ + G+RV H+ ARGP KGG+RYHPEV
Sbjct: 30 LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 89
Query: 124 DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTD 183
EV ALA MT K A +PYGG KGGI P++LS ELERLTR +T +I L+G D
Sbjct: 90 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 149
Query: 184 IPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYATEAL 242
IPAPD+ T + MAW++D YS G + P VVTGKPI LGGSLGR ATGRGV A
Sbjct: 150 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAA 209
Query: 243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH 302
+ G + IQGFGNVG+ AAR H+ G +V+AV D TG V N GID + LL H
Sbjct: 210 AEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH 269
Query: 303 KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD 362
+ G ++ + + + ++ + L+P AL + +NA ++A+ + E AN PT
Sbjct: 270 VQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTT 329
Query: 363 PEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
P AD+IL ++GV ++PD+ AN+GGVTVSYFEWVQ
Sbjct: 330 PAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQ 363
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 210/334 (62%), Gaps = 1/334 (0%)
Query: 64 LGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDP 123
LG + L SL P R + V+ + DDGS+ + G+RV H+ ARGP KGG+RYHPEV
Sbjct: 46 LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 105
Query: 124 DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTD 183
EV ALA MT K A +PYGG KGGI P++LS ELERLTR +T +I L+G D
Sbjct: 106 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 165
Query: 184 IPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYATEAL 242
IPAPD+ T + MAW++D YS G + P VVTGKPI LGGSLGR ATGRGV A
Sbjct: 166 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAA 225
Query: 243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH 302
+ G + IQGFGNVG+ AAR H+ G +V+AV D TG V N GID + LL H
Sbjct: 226 AEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH 285
Query: 303 KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD 362
+ G ++ + + + ++ + L+P AL + +NA ++A+ + E AN PT
Sbjct: 286 VQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTT 345
Query: 363 PEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
P AD+IL ++GV ++PD+ AN+GGVTVSYFEWVQ
Sbjct: 346 PAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQ 379
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/339 (44%), Positives = 205/339 (60%), Gaps = 7/339 (2%)
Query: 65 GLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPD 124
G + L P R + V + D G + G+RVQH + GP KGG+R+HPEV
Sbjct: 22 GFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLA 81
Query: 125 EVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDI 184
+ ALA LMT K ++A +PYGGAKG + PK+LS ELE L+R + + I LIG DI
Sbjct: 82 DDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDI 141
Query: 185 PAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYATEALL 243
PAPD+GTNAQ MAW++DEYSK G++ P V T KP +L G+ RE ATG GV AT +
Sbjct: 142 PAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMA 201
Query: 244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK 303
+ I T IQG GNVG W A + + G KVIAVSDI G +G+++ + +K
Sbjct: 202 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNK 261
Query: 304 DKTGS--LKDFDGGDSME----PSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAA 357
TG ++ F D+ E P + + D+ +P A+ V++ +NA VKA+ ++E A
Sbjct: 262 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGA 321
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
N PT PEA+ IL +RGV ++PDI AN+GGV +SY EWV+
Sbjct: 322 NGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVE 360
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 152/324 (46%), Positives = 198/324 (61%), Gaps = 15/324 (4%)
Query: 87 IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
I +DDGS G+R QH + R P KGGIRY +V DEV ALA LMT+K AV D+P+GG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
AK G+ +PK +++ELE++TR FT ++ IG D+PAPDM T + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
GH + A VTGKPI GG GR +ATGRGV + E + E D
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
TFV+QGFGNVG + R +H G K IAV + G++ N DGID +L K + GS+ F
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 299
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
E S +L +CD+LIP A L + NA VKAK I E AN PT PEAD+I +R
Sbjct: 300 PKAKPYEGS-ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 358
Query: 373 GVTILPDIYANSGGVTVSYFEWVQ 396
+ ++PD+Y N+GGVTVSYFEW++
Sbjct: 359 NIMVIPDLYLNAGGVTVSYFEWLK 382
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 277 bits (709), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 152/324 (46%), Positives = 197/324 (60%), Gaps = 15/324 (4%)
Query: 87 IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV D+P+GG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
AK G+ +PK +++ELE++TR FT ++ IG D+PAPDM T + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
GH + A VTGKPI GG GR +ATGRGV + E + E D
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
TFV+QGFGNVG + R +H G K IAV + G++ N DGID +L K + GS+ F
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 299
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
E S +L +CD+LIP A L + NA VKAK I E AN PT PEAD+I +R
Sbjct: 300 PKAKPYEGS-ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 358
Query: 373 GVTILPDIYANSGGVTVSYFEWVQ 396
+ ++PD+Y N+GGVTVSYFEW++
Sbjct: 359 NIMVIPDLYLNAGGVTVSYFEWLK 382
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 277 bits (709), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 149/357 (41%), Positives = 208/357 (58%), Gaps = 7/357 (1%)
Query: 47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 106
+N L A R A LG D + L P R I++ + DDG++ + G+R H +
Sbjct: 5 LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSS 64
Query: 107 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERL 166
A GP KGG+R+HP V+ DEV AL+ MT+K +PYGG KGGI P ELS ELE+L
Sbjct: 65 AVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQL 124
Query: 167 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAV--VTGKPIDLGGS 224
+R + + ++ +G DIPAPD+ TN Q M+W +DEY K +G + TGKP+ GGS
Sbjct: 125 SRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGS 184
Query: 225 LGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284
GR ATG GV G + D +QGFGNVG++ + I +GGKV A+++
Sbjct: 185 EGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEW 244
Query: 285 -----TGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGV 339
A+ N +GID +LLA+K+ +L F G + + E E D+++P AL V
Sbjct: 245 DRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENV 304
Query: 340 LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
+ E A + AK + EAAN PT PE D++L++RG+ + PDI NSGGV VSY+EWVQ
Sbjct: 305 ITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQ 361
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 277 bits (709), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 152/324 (46%), Positives = 197/324 (60%), Gaps = 15/324 (4%)
Query: 87 IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV D+P+GG
Sbjct: 69 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 128
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
AK G+ +PK +++ELE++TR FT ++ IG D+PAPDM T + M+WI D Y+
Sbjct: 129 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 188
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
GH + A VTGKPI GG GR +ATGRGV + E + E D
Sbjct: 189 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 248
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
TFV+QGFGNVG + R +H G K IAV + G++ N DGID +L K + GS+ F
Sbjct: 249 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 308
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
E S +L +CD+LIP A L + NA VKAK I E AN PT PEAD+I +R
Sbjct: 309 PKAKPYEGS-ILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 367
Query: 373 GVTILPDIYANSGGVTVSYFEWVQ 396
+ ++PD+Y N+GGVTVSYFEW++
Sbjct: 368 NIMVIPDLYLNAGGVTVSYFEWLK 391
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/324 (45%), Positives = 196/324 (60%), Gaps = 15/324 (4%)
Query: 87 IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV D+P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
AK G+ +PK +++ELE++TR FT ++ IG D+PAPDM T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
GH + A VTGKPI GG GR +ATGRGV + E + E D
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 244
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
TF +QGFGNVG + R +H G K +AV + G++ N DGID +L K + G++ F
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
E S +L +CD+LIP A L + NA VKAK I E AN PT PEAD+I +R
Sbjct: 305 PKAKIYEGS-ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 363
Query: 373 GVTILPDIYANSGGVTVSYFEWVQ 396
+ ++PD+Y N+GGVTVSYFEW++
Sbjct: 364 NIMVIPDLYLNAGGVTVSYFEWLK 387
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 195/324 (60%), Gaps = 15/324 (4%)
Query: 87 IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV D+P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
AK G+ +PK +++ELE++TR FT ++ IG D+PAPDM T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
GH + A VTGKPI GG GR +ATGRGV + E + E D
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 244
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
TFV+QGFGNVG + R +H G K I V + G++ N DGID +L K + G++ F
Sbjct: 245 KTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
E S +L +CD+LIP A L + NA VKAK I E AN PT PEAD+I +R
Sbjct: 305 PKAKIYEGS-ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 363
Query: 373 GVTILPDIYANSGGVTVSYFEWVQ 396
+ ++PD+Y N+GGVTVSYFEW+
Sbjct: 364 NIMVIPDLYLNAGGVTVSYFEWLN 387
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 194/324 (59%), Gaps = 15/324 (4%)
Query: 87 IPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGG 146
I +DDGS G+R QH + R P KGGIRY +V DEV ALA LMT+K AV D+P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 147 AKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYS 204
AK G+ +PK ++ +LE++TR FT ++ IG D+PAP+M T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYA 184
Query: 205 KFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ--------AIRD 252
GH + A VTGKPI GG GR +ATGRGV + E + D
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSILGMTPGFGD 244
Query: 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDF 312
TF +QGFGNVG + R +H G K +AV + G++ N DGID +L K + G++ F
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKR 372
E S +L +CD+LIP A L + NA VKAK I E AN PT P+AD+I +R
Sbjct: 305 PKAKIYEGS-ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLER 363
Query: 373 GVTILPDIYANSGGVTVSYFEWVQ 396
+ ++PD+Y N+GGVTVSYF+ ++
Sbjct: 364 NIMVIPDLYLNAGGVTVSYFQILK 387
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 234 bits (596), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 190/341 (55%), Gaps = 5/341 (1%)
Query: 57 FRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIR 116
A ++ G+ L P R + + + DDG + + G+RV HD ARGP KGG+R
Sbjct: 22 LERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVR 81
Query: 117 YHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHD 176
P V + LA MT K AV D+P+GGA GGI PK LS ELERL R +T ++
Sbjct: 82 LDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVG 141
Query: 177 LIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGV 235
LIG +DI PD+G + Q MAWI+D YS G + P VVTGKP LGGS GR+ A G G
Sbjct: 142 LIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGA 201
Query: 236 VYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGID 295
+ EAL G +R V+QG G VG+ A G +V+AV+ G + +G+D
Sbjct: 202 LLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLD 261
Query: 296 IHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIE 355
+ ++L+ + TGSL D + P E+ E +VL+ A G L + A V+A+ ++E
Sbjct: 262 VAEVLSAYEATGSLPRLD----LAPEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVE 317
Query: 356 AANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
AN +PEA+ L +G ++PD+ + GG+ SY EWVQ
Sbjct: 318 VANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQ 358
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 166/338 (49%), Gaps = 12/338 (3%)
Query: 70 LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
LER ++IP R I+ D+G + G+RVQ + A GP KGG+R+ P V+ + L
Sbjct: 49 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 107
Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
+K ++ +P GGAKGG P S+ E+ R + F +++ IG D+PA D+
Sbjct: 108 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 167
Query: 190 GTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
G A+ + ++ +Y K G V+TGK GGSL R ATG G+VY TEA+L HG
Sbjct: 168 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGM 227
Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA----HKD 304
+ + G GNV +A E G +VI SD +G V + G KL
Sbjct: 228 GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKAS 287
Query: 305 KTGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAAN 358
+ G + D+ G +E + + D+ +PCA L + A + A K + E AN
Sbjct: 288 RDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGAN 347
Query: 359 HPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
PT EA E+ + GV P AN+GGV S E Q
Sbjct: 348 MPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQ 385
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 162/339 (47%), Gaps = 11/339 (3%)
Query: 68 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN 127
S LER L+ P R I+ D + +RVQ +A GP KGG+R+HP V+ +
Sbjct: 49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAP 187
L T+K A+ +P GG KGG PK S E+ R + +++ +G TD+PA
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 188 DMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHG 247
D+G + + ++ K ++ V TGK + GGSL R ATG G+VY TEA+L HG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 227
Query: 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA----HK 303
+ + G GNV +A E G +VI SD +G V + G KL
Sbjct: 228 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKA 287
Query: 304 DKTGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
+ G + D+ G +E + + D+ +PCA L + A + A K + E A
Sbjct: 288 SRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 347
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
N PT EA E+ + GV P AN+GGV S E Q
Sbjct: 348 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQ 386
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 162/339 (47%), Gaps = 11/339 (3%)
Query: 68 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN 127
S LER L+ P R I+ D + +RVQ +A GP KGG+R+HP V+ +
Sbjct: 49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAP 187
L T+K A+ +P GG KGG PK S E+ R + +++ +G TD+PA
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 188 DMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHG 247
D+G + + ++ K ++ V TGK + GGSL R ATG G+VY TEA+L HG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 227
Query: 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA----HK 303
+ + G GNV +A E G +VI SD +G V + G KL
Sbjct: 228 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGLVVDESGFTKEKLARLIEIKA 287
Query: 304 DKTGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
+ G + D+ G +E + + D+ +PCA L + A + A K + E A
Sbjct: 288 SRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 347
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
N PT EA E+ + GV P AN+GGV S E Q
Sbjct: 348 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQ 386
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 162/339 (47%), Gaps = 11/339 (3%)
Query: 68 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN 127
S LER L+ P R I+ D + +RVQ +A GP KGG+R+HP V+ +
Sbjct: 52 SLLER-LVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 110
Query: 128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAP 187
L T+K A+ +P GG KGG PK S E+ R + +++ +G TD+PA
Sbjct: 111 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 170
Query: 188 DMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHG 247
D+G + + ++ K ++ V TGK + GGSL R ATG G+VY TEA+L HG
Sbjct: 171 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 230
Query: 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA----HK 303
+ + G GNV +A E G +VI SD +G V + G KL
Sbjct: 231 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKS 290
Query: 304 DKTGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
+ G + D+ G +E + + D+ +PCA L + A + A K + E A
Sbjct: 291 SRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 350
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
N PT EA E+ + GV P AN+GGV S E Q
Sbjct: 351 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQ 389
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 157/339 (46%), Gaps = 27/339 (7%)
Query: 77 PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 136
P R I+ D G GFRVQ+++ GP KGG+R+HP V+ + L +K
Sbjct: 64 PERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFK 123
Query: 137 TAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTM 196
++ +P GG KGG PK S +E+ + + F + IG +TD+PA D+G + +
Sbjct: 124 NSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREI 183
Query: 197 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFV 256
++ +Y K V+TGK I GGS R ATG GVVY E +L + + + +
Sbjct: 184 GYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCL 243
Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD 316
+ G GNV + + E+G V+ +SD G + +G K++ + D
Sbjct: 244 VSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFT-------KEQLNYIMDIKNNQ 296
Query: 317 SMEPSELLAHE---------------CDVLIPCALGGVLKRENAADV----KAKFIIEAA 357
+ E L + CD+ PCA + EN AD+ K K I+E A
Sbjct: 297 RLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEI-NENDADLFIQNKCKMIVEGA 355
Query: 358 NHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
N PT +A L + + + P AN+GGV VS E Q
Sbjct: 356 NMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQ 394
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 167/340 (49%), Gaps = 14/340 (4%)
Query: 70 LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
LER ++IP R I+ D+G + G+RVQ + A GP KGG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 106
Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
+K ++ +P GGAKGG P S+ E+ R + F +++ IG D+PA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 190 GTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
G A+ + ++ +Y K G V+TGK GGSL R ATG G VY EA++
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH------ 302
+ T + GFGNV AA+ + E G K + +S G + + +GI + + +
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA 286
Query: 303 --KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
++K D G + + D+++PCA + E A + A K+ IE A
Sbjct: 287 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVA 346
Query: 358 NHPTDPEADEILSKR-GVTILPDIYANSGGVTVSYFEWVQ 396
N PT EA L ++ + + P N+GGV VS FE Q
Sbjct: 347 NMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQ 386
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 166/340 (48%), Gaps = 14/340 (4%)
Query: 70 LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
LER ++IP R I+ D+G + G+RVQ + A GP GG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
+K ++ +P GGAKGG P S+ E+ R + F +++ IG D+PA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 190 GTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
G A+ + ++ +Y K G V+TGK GGSL R ATG G VY EA++
Sbjct: 167 GVGARELGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH------ 302
+ T + GFGNV AA+ + E G K + +S G + + +GI + + +
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA 286
Query: 303 --KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
++K D G + + D+++PCA + E A + A K+ IE A
Sbjct: 287 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVA 346
Query: 358 NHPTDPEADEILSKR-GVTILPDIYANSGGVTVSYFEWVQ 396
N PT EA L ++ + + P N+GGV VS FE Q
Sbjct: 347 NMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQ 386
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 165/340 (48%), Gaps = 14/340 (4%)
Query: 70 LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNAL 129
LER ++IP R I+ D+G + G+RVQ + A GP GG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 130 AQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDM 189
+K ++ +P GGAKGG P S+ E+ R + F +++ IG D+PA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 190 GTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQ 248
G A+ + ++ +Y K G V+TGK GGSL R ATG G VY EA++
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAH------ 302
+ T + GFGNV AA+ + E G K + +S G + + +GI + + +
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA 286
Query: 303 --KDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA---KFIIEAA 357
++K D G + + D+++PCA + E A + A K+ IE A
Sbjct: 287 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVA 346
Query: 358 NHPTDPEADEILSKR-GVTILPDIYANSGGVTVSYFEWVQ 396
N PT EA L ++ + + P N+GGV V FE Q
Sbjct: 347 NMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVVGFEMSQ 386
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 15/333 (4%)
Query: 77 PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 136
P R I+ D+G FRVQ+++A GP KGG+R+HP V+ V L +K
Sbjct: 77 PERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFK 136
Query: 137 TAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTM 196
++ + GG KGG PK S++E+ + + F +++ IG TD+PA D+G + +
Sbjct: 137 NSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREI 196
Query: 197 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFV 256
++ +Y K +TGK + GGS R ATG G+VY +L + T V
Sbjct: 197 GYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAV 256
Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGI---DIHKLLAHK-DKTGSLKDF 312
+ G GNV + + + KV+ +SD G V +G ++ L+ K +K G +K++
Sbjct: 257 VSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEY 316
Query: 313 DGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV-KAKFII--------EAANHPTDP 363
S ++ +E +PC L +N D+ +AK + E AN P+
Sbjct: 317 LNHSST--AKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTV 374
Query: 364 EADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
+A + + P AN+GGV +S E Q
Sbjct: 375 DAINLFKSNNIIYCPSKAANAGGVAISGLEMSQ 407
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
F ++ D+ + GP GG R Y D + LA MT K AV+++P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
+P+ + S R+ R+ + I L G + PD+ TN+ M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
V G+ ++ GG+ T GV A +A +A G D LT ++QG G VG A L
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
E G +++ T V +A + H +A +D +L+ CDV
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 235
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
PCA+GGV+ E A + + AAN+ D A +IL RG+ PD AN+GG
Sbjct: 236 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
F ++ D+ + GP GG R Y D + LA MT K AV+++P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
+P+ + S R+ R+ + I L G + PD+ TN+ M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
V G+ ++ GG+ T GV A +A +A G D LT ++QG G VG A L
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
E G +++ T V +A + H +A +D +L+ CDV
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 236
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
PCA+GGV+ E A + + AAN+ D A +IL RG+ PD AN+GG
Sbjct: 237 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
F ++ D+ + GP GG R Y D + LA MT K AV+++P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
+P+ + S R+ R+ + I L G + PD+ TN+ M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
V G+ ++ GG+ T GV A +A +A G D LT ++QG G VG A L
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
E G +++ T V +A + H +A +D +L+ CDV
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 236
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
PCA+GGV+ E A + + AAN+ D A +IL RG+ PD AN+GG
Sbjct: 237 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
F ++ D+ + GP GG R Y D + LA MT K AV+++P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
+P+ + S R+ R+ + I L G + PD+ TN+ M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
V G+ ++ GG+ T GV A +A +A G D LT ++QG G VG A L
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
E G +++ T V +A + H +A +D +L+ CDV
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 236
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
PCA+GGV+ E A + + AAN+ D A +IL RG+ PD AN+GG
Sbjct: 237 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
F ++ D+ + GP GG R Y D + LA MT K AV+++P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
+P+ + S R+ R+ + I L G + PD+ TN+ M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
V G+ ++ GG+ T GV A +A +A G D LT ++QG G VG A L
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
E G +++ T V +A + H +A +D +L+ CDV
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 236
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
PCA+GGV+ E A + + AAN+ D A +IL RG+ PD AN+GG
Sbjct: 237 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
F ++ D+ + GP GG R Y D + LA MT K AV+++P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
+P+ + S R+ R+ + I L G + PD+ TN+ M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
V G+ ++ GG+ T GV A +A +A G D LT ++QG G VG A L
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
E G +++ T V +A + H +A +D +L+ CDV
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 235
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
PCA+GGV+ E A + + AAN+ D A +IL RG+ PD AN+GG
Sbjct: 236 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
F ++ D+ + GP GG R Y D + LA MT K AV+++P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
+P+ + S R+ R+ + I L G + PD+ TN+ M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
V G+ ++ GG+ T GV A +A +A G D LT ++QG G VG A L
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
E G +++ T V +A + H +A +D +L+ CDV
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 235
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
PCA+GGV+ E A + + AAN+ D A +IL RG+ PD AN+GG
Sbjct: 236 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 137/296 (46%), Gaps = 38/296 (12%)
Query: 100 FRVQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGC- 153
F ++ D+ + GP GG R Y D + LA MT K AV+++P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 154 SPK-ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPA 212
+P+ + S R+ R+ + I L G + PD+ TN+ M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 213 VVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRD-LTFVIQGFGNVGSWAARLI 271
V G+ ++ GG+ T GV A +A +A G D LT ++QG G VG A L
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 272 HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331
E G +++ T V +A + H +A +D +L+ CDV
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALG-HTAVALED------------------VLSTPCDVF 235
Query: 332 IPCALGGVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGG 386
PCA+GGV+ E A + + AAN+ D A +IL RG+ PD AN+GG
Sbjct: 236 APCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 125/291 (42%), Gaps = 38/291 (13%)
Query: 104 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELS 159
HD GP GG R Y E + ++ LA+ MT+K A A + GG K I +PK
Sbjct: 32 HDTTLGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKTDK 91
Query: 160 NSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI 219
N E+ R F + I L G + I A D+GT M I E VTG
Sbjct: 92 NDEM---FRAFGRYIEGLNGRY--ITAEDVGTTEADMDLINLETD--------YVTGTSA 138
Query: 220 DLGGSLGREAATGRGVVYATEALLAEH--GQAIRDLTFVIQGFGNVGSWAARLIHERGGK 277
G S T G+ Y +A E ++ T +QG GNV +HE G K
Sbjct: 139 GAGSSGNPSPVTAYGIYYGMKAAAKEAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAK 198
Query: 278 VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALG 337
+I ++DI +++ D G ++ +E+ + E D+ PCALG
Sbjct: 199 LI-ITDI-----------------NEEAVQRAVDAFGATAVGINEIYSQEADIFAPCALG 240
Query: 338 GVLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANSGGV 387
++ E +KAK I +AN+ + +++ + G+ PD NSGGV
Sbjct: 241 AIINDETIPQLKAKVIAGSANNQLKETRHGDLIHEMGIVYAPDYVINSGGV 291
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 120/291 (41%), Gaps = 38/291 (13%)
Query: 104 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELS 159
HD GP GG R Y+ E + ++ LA+ MT+K A A + GG K I P
Sbjct: 32 HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADK 91
Query: 160 NSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI 219
N ++ R F Q ++ I A D+GT M I E G SPA
Sbjct: 92 NEDMFRALGRFIQGLNGRY-----ITAEDVGTTVDDMDLIHQETDYVTGISPA------- 139
Query: 220 DLGGSLGREAATGRGVVYATEALLAEH--GQAIRDLTFVIQGFGNVGSWAARLIHERGGK 277
G S T GV +A E ++ L +QG GNV + ++ G K
Sbjct: 140 -FGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAK 198
Query: 278 VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALG 337
++ V+D+ +K + +G D++ P+ + CD+ PCALG
Sbjct: 199 LV-VTDV-----------------NKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALG 240
Query: 338 GVLKRENAADVKAKFIIEAA-NHPTDPEADEILSKRGVTILPDIYANSGGV 387
VL +KAK I +A N DP + L + G+ PD N+GGV
Sbjct: 241 AVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGV 291
>pdb|3ING|A Chain A, Crystal Structure Of Homoserine Dehydrogenase
(Np_394635.1) From Thermoplasma Acidophilum At 1.95 A
Resolution
Length = 325
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 251 RDLTFVIQGFGNVGSWAARLI----HERGG---KVIAVSDITGAVKNADGIDIHKLLAHK 303
+++ ++ G GNVG R+I R KV+ VSD + + + +DI ++++K
Sbjct: 3 KEIRIILXGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSD-SRSYASGRNLDISSIISNK 61
Query: 304 DKTGSLKD--FDGGDSMEPSELLAHECDVLIPC 334
+KTG + D F G P +L D+L+ C
Sbjct: 62 EKTGRISDRAFSG-----PEDLXGEAADLLVDC 89
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD 283
R+LT I GFG +G R E+G KV+AV+D
Sbjct: 6 RELTVGINGFGRIGRLVLRACMEKGVKVVAVND 38
>pdb|3P8U|A Chain A, Crystal Structure Of Meosfp In Its Green State
pdb|3P8U|B Chain B, Crystal Structure Of Meosfp In Its Green State
pdb|3P8U|C Chain C, Crystal Structure Of Meosfp In Its Green State
pdb|3P8U|D Chain D, Crystal Structure Of Meosfp In Its Green State
Length = 230
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 215 TGKPIDLGGSLGREAATGRGVVYATEAL--------LAEHGQAIRDLTFVIQGFGNVGSW 266
TGKP + S+ E G + +A + L AE+ I+D + Q F SW
Sbjct: 36 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAEYPDHIQD--YFKQSFPKGYSW 93
Query: 267 AARLIHERGGKVIAVSDIT 285
L E GG IA +DIT
Sbjct: 94 ERSLTFEDGGICIARNDIT 112
>pdb|1ZUX|A Chain A, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|B Chain B, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|C Chain C, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|D Chain D, Eosfp Fluorescent Protein- Green Form
Length = 224
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 215 TGKPIDLGGSLGREAATGRGVVYATEAL--------LAEHGQAIRDLTFVIQGFGNVGSW 266
TGKP + S+ E G + +A + L AE+ I+D + Q F SW
Sbjct: 30 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAEYPDHIQD--YFKQSFPKGYSW 87
Query: 267 AARLIHERGGKVIAVSDIT 285
L E GG IA +DIT
Sbjct: 88 ERSLTFEDGGICIARNDIT 106
>pdb|2VVH|A Chain A, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|B Chain B, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|C Chain C, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|D Chain D, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVI|A Chain A, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|B Chain B, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|C Chain C, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|D Chain D, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
Length = 226
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 215 TGKPIDLGGSLGREAATGRGVVYATEAL--------LAEHGQAIRDLTFVIQGFGNVGSW 266
TGKP + S+ E G + +A + L AE+ I+D + Q F SW
Sbjct: 32 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAEYPDHIQD--YFKQSFPKGYSW 89
Query: 267 AARLIHERGGKVIAVSDIT 285
L E GG IA +DIT
Sbjct: 90 ERSLTFEDGGICIARNDIT 108
>pdb|3TMR|A Chain A, Irisfp, Planar Chromophore
pdb|3TMR|B Chain B, Irisfp, Planar Chromophore
pdb|3TMR|C Chain C, Irisfp, Planar Chromophore
pdb|3TMR|D Chain D, Irisfp, Planar Chromophore
pdb|3TMT|A Chain A, Irisfp, Distorted Chromophore
pdb|3TMT|B Chain B, Irisfp, Distorted Chromophore
pdb|3TMT|C Chain C, Irisfp, Distorted Chromophore
pdb|3TMT|D Chain D, Irisfp, Distorted Chromophore
Length = 230
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 215 TGKPIDLGGSLGREAATGRGVVYATEAL--------LAEHGQAIRDLTFVIQGFGNVGSW 266
TGKP + S+ E G + +A + L AE+ I+D + Q F SW
Sbjct: 36 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAEYPDHIQD--YFKQSFPKGYSW 93
Query: 267 AARLIHERGGKVIAVSDIT 285
L E GG IA +DIT
Sbjct: 94 ERSLTFEDGGICIARNDIT 112
>pdb|2VVJ|A Chain A, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|B Chain B, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|C Chain C, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|D Chain D, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
Length = 226
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 215 TGKPIDLGGSLGREAATGRGVVYATEAL--------LAEHGQAIRDLTFVIQGFGNVGSW 266
TGKP + S+ E G + +A + L AE+ I+D + Q F SW
Sbjct: 32 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAXXNRVFAEYPDHIQD--YFKQSFPKGYSW 89
Query: 267 AARLIHERGGKVIAVSDIT 285
L E GG IA +DIT
Sbjct: 90 ERSLTFEDGGICIARNDIT 108
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSDIT 285
I GFG +G R++HERG +V ++D+T
Sbjct: 5 INGFGRIGRQVFRILHERGVEVALINDLT 33
>pdb|2BTJ|A Chain A, Fluorescent Protein Eosfp- Red Form
pdb|2BTJ|B Chain B, Fluorescent Protein Eosfp- Red Form
pdb|2BTJ|C Chain C, Fluorescent Protein Eosfp- Red Form
pdb|2BTJ|D Chain D, Fluorescent Protein Eosfp- Red Form
Length = 222
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 215 TGKPIDLGGSLGREAATGRGVVYATEAL----------LAEHGQAIRDLTFVIQGFGNVG 264
TGKP + S+ E G + +A + L AE+ I+D + Q F
Sbjct: 30 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAXHYGNRVFAEYPDHIQD--YFKQSFPKGY 87
Query: 265 SWAARLIHERGGKVIAVSDIT 285
SW L E GG IA +DIT
Sbjct: 88 SWERSLTFEDGGICIARNDIT 108
>pdb|3S05|A Chain A, Meos2 Fluorescent Protein-Green Form
pdb|3S05|B Chain B, Meos2 Fluorescent Protein-Green Form
pdb|3S05|C Chain C, Meos2 Fluorescent Protein-Green Form
pdb|3S05|D Chain D, Meos2 Fluorescent Protein-Green Form
Length = 224
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 215 TGKPIDLGGSLGREAATGRGVVYATEAL--------LAEHGQAIRDLTFVIQGFGNVGSW 266
TGKP + S+ E G + +A + L A++ I+D + Q F SW
Sbjct: 30 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAKYPDNIQD--YFKQSFPKGYSW 87
Query: 267 AARLIHERGGKVIAVSDIT 285
L E GG IA +DIT
Sbjct: 88 ERSLTFEDGGICIARNDIT 106
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSDIT 285
I GFG +G R++H RG +V ++D+T
Sbjct: 5 INGFGRIGRQVFRILHSRGVEVALINDLT 33
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSDIT 285
I GFG +G R++H RG +V ++D+T
Sbjct: 5 INGFGRIGRQVFRILHSRGVEVALINDLT 33
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285
L Q + I GFG +G ++ ERG ++A++D+T
Sbjct: 12 LEAQTQGPGSMKLAINGFGRIGRNVFKIAFERGIDIVAINDLT 54
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 14/62 (22%)
Query: 257 IQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL-KDF 312
I GFG +G R+I+ER +V+A++D+T K LAH K S+ K F
Sbjct: 5 INGFGRIGRLVYRIIYERKNPDIEVVAINDLTDT----------KTLAHLLKYDSVHKKF 54
Query: 313 DG 314
G
Sbjct: 55 PG 56
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 257 IQGFGNVGSWAARLIHERGGKVIAVSD 283
I GFG +G R+ E+G +V+AV+D
Sbjct: 6 INGFGRIGRLVLRVCMEKGVRVVAVND 32
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 354 IEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396
+EAA + EA EI K GVT + D+ NS TV E V+
Sbjct: 348 VEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVK 390
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,647,129
Number of Sequences: 62578
Number of extensions: 550031
Number of successful extensions: 1342
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 58
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)