Query 015361
Match_columns 408
No_of_seqs 275 out of 1800
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02477 glutamate dehydrogena 100.0 1E-120 3E-125 929.6 40.5 358 47-404 1-358 (410)
2 COG0334 GdhA Glutamate dehydro 100.0 2E-120 5E-125 915.6 35.9 357 48-404 2-359 (411)
3 PRK14030 glutamate dehydrogena 100.0 4E-119 8E-124 923.6 40.1 360 45-404 16-391 (445)
4 PRK09414 glutamate dehydrogena 100.0 4E-115 8E-120 896.3 40.2 360 45-404 20-391 (445)
5 PTZ00079 NADP-specific glutama 100.0 4E-113 8E-118 878.1 39.9 359 47-405 29-401 (454)
6 PRK14031 glutamate dehydrogena 100.0 8E-112 2E-116 869.6 38.3 361 45-405 16-391 (444)
7 KOG2250 Glutamate/leucine/phen 100.0 2E-103 4E-108 797.4 33.8 332 69-400 66-409 (514)
8 PTZ00324 glutamate dehydrogena 100.0 1.4E-81 3E-86 686.5 32.1 354 26-399 424-847 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 2.6E-60 5.7E-65 458.5 18.2 190 215-404 1-201 (254)
10 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 5.1E-53 1.1E-57 402.8 19.7 183 222-404 1-183 (227)
11 PF00208 ELFV_dehydrog: Glutam 100.0 1.6E-53 3.4E-58 410.4 12.9 183 222-404 1-194 (244)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 9E-51 1.9E-55 385.0 16.9 174 230-404 1-174 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 4.4E-48 9.6E-53 340.0 14.0 130 77-206 1-130 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 3.5E-36 7.5E-41 281.8 15.7 153 228-398 2-157 (200)
15 PF05088 Bac_GDH: Bacterial NA 100.0 4.2E-35 9.1E-40 334.5 17.0 363 12-395 643-1098(1528)
16 COG2902 NAD-specific glutamate 100.0 3.4E-35 7.4E-40 324.4 14.6 356 13-396 706-1161(1592)
17 smart00839 ELFV_dehydrog Gluta 99.9 1.9E-26 4.2E-31 194.7 5.1 73 328-400 3-75 (102)
18 PRK06392 homoserine dehydrogen 99.4 3E-13 6.4E-18 136.0 10.1 130 253-405 1-138 (326)
19 PRK08374 homoserine dehydrogen 99.4 7.9E-13 1.7E-17 133.4 8.8 121 253-398 3-137 (336)
20 PRK06270 homoserine dehydrogen 99.0 1.2E-09 2.5E-14 110.6 10.3 128 253-400 3-142 (341)
21 cd05191 NAD_bind_amino_acid_DH 98.7 7.3E-08 1.6E-12 78.4 9.9 84 230-357 1-86 (86)
22 PRK06813 homoserine dehydrogen 98.7 2.1E-08 4.5E-13 101.8 7.7 131 253-406 3-145 (346)
23 PLN02700 homoserine dehydrogen 98.6 1.2E-07 2.6E-12 97.2 8.2 121 252-397 3-154 (377)
24 COG0460 ThrA Homoserine dehydr 98.4 7.5E-07 1.6E-11 89.8 8.3 124 251-405 2-135 (333)
25 PRK09436 thrA bifunctional asp 98.3 1.7E-06 3.8E-11 96.9 9.5 129 248-406 461-604 (819)
26 PF03447 NAD_binding_3: Homose 98.2 1.4E-06 3E-11 74.3 4.5 110 259-408 1-117 (117)
27 PRK09466 metL bifunctional asp 98.0 1.4E-05 3.1E-10 89.4 9.4 56 249-304 455-520 (810)
28 cd01065 NAD_bind_Shikimate_DH 97.9 0.00043 9.4E-09 61.0 14.0 130 237-379 4-138 (155)
29 PF00670 AdoHcyase_NAD: S-aden 97.8 0.00015 3.2E-09 66.5 9.3 121 233-374 3-126 (162)
30 TIGR02853 spore_dpaA dipicolin 97.7 0.00043 9.4E-09 68.7 11.8 126 228-377 130-259 (287)
31 PRK08306 dipicolinate synthase 97.4 0.00097 2.1E-08 66.4 10.1 126 228-377 131-260 (296)
32 cd05311 NAD_bind_2_malic_enz N 97.4 0.0018 4E-08 62.1 11.5 137 231-375 4-145 (226)
33 PTZ00075 Adenosylhomocysteinas 97.1 0.0021 4.6E-08 68.0 9.0 108 232-359 233-343 (476)
34 PF02826 2-Hacid_dh_C: D-isome 97.1 0.0019 4E-08 59.4 7.4 117 246-382 30-155 (178)
35 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0098 2.1E-07 54.7 11.8 96 226-360 22-119 (168)
36 PRK05476 S-adenosyl-L-homocyst 97.0 0.0021 4.6E-08 67.3 8.0 109 227-358 190-300 (425)
37 COG0281 SfcA Malic enzyme [Ene 96.9 0.0059 1.3E-07 63.5 10.5 125 229-365 176-306 (432)
38 PRK15438 erythronate-4-phospha 96.9 0.011 2.3E-07 61.2 12.1 47 235-281 99-145 (378)
39 PRK14175 bifunctional 5,10-met 96.8 0.011 2.3E-07 59.0 10.6 94 228-360 138-233 (286)
40 PF01488 Shikimate_DH: Shikima 96.8 0.0036 7.9E-08 55.0 6.6 103 248-364 8-117 (135)
41 PF03446 NAD_binding_2: NAD bi 96.7 0.0041 8.9E-08 56.2 6.8 106 253-377 2-116 (163)
42 cd00401 AdoHcyase S-adenosyl-L 96.7 0.0054 1.2E-07 64.1 8.4 53 229-285 182-234 (413)
43 COG0373 HemA Glutamyl-tRNA red 96.7 0.0078 1.7E-07 62.8 9.5 111 234-361 160-278 (414)
44 PRK09599 6-phosphogluconate de 96.7 0.0059 1.3E-07 60.6 8.3 115 253-388 1-125 (301)
45 PRK12861 malic enzyme; Reviewe 96.6 0.038 8.3E-07 61.8 14.5 178 164-374 119-305 (764)
46 cd05312 NAD_bind_1_malic_enz N 96.6 0.015 3.2E-07 57.8 10.2 122 231-359 4-142 (279)
47 COG0111 SerA Phosphoglycerate 96.6 0.0093 2E-07 60.4 8.8 35 247-281 137-171 (324)
48 PRK13529 malate dehydrogenase; 96.4 0.11 2.3E-06 56.3 15.9 184 158-359 218-419 (563)
49 TIGR00507 aroE shikimate 5-deh 96.4 0.097 2.1E-06 51.2 14.2 129 231-378 100-235 (270)
50 PRK08410 2-hydroxyacid dehydro 96.3 0.022 4.8E-07 57.1 9.7 36 248-284 141-176 (311)
51 PRK06932 glycerate dehydrogena 96.3 0.032 6.9E-07 56.2 10.8 34 248-281 143-176 (314)
52 PRK00258 aroE shikimate 5-dehy 96.3 0.088 1.9E-06 51.8 13.6 131 231-378 105-242 (278)
53 PRK07232 bifunctional malic en 96.3 0.032 6.9E-07 62.4 11.5 119 229-359 162-286 (752)
54 cd00762 NAD_bind_malic_enz NAD 96.3 0.018 3.9E-07 56.5 8.4 121 231-359 4-143 (254)
55 PRK12549 shikimate 5-dehydroge 96.2 0.082 1.8E-06 52.4 13.1 131 232-378 111-248 (284)
56 PRK06349 homoserine dehydrogen 96.2 0.012 2.6E-07 61.6 7.4 35 252-286 3-47 (426)
57 PRK13243 glyoxylate reductase; 96.2 0.018 3.8E-07 58.4 8.2 105 247-372 145-257 (333)
58 PRK06487 glycerate dehydrogena 96.2 0.043 9.3E-07 55.3 10.9 35 248-282 144-178 (317)
59 PRK13302 putative L-aspartate 96.2 0.022 4.7E-07 56.1 8.6 112 250-378 4-122 (271)
60 PRK06436 glycerate dehydrogena 96.2 0.039 8.5E-07 55.3 10.4 34 249-282 119-152 (303)
61 PLN03129 NADP-dependent malic 96.1 0.14 3E-06 55.7 14.9 179 158-359 243-438 (581)
62 PRK00048 dihydrodipicolinate r 96.1 0.022 4.9E-07 55.5 8.1 109 253-382 2-119 (257)
63 PF03949 Malic_M: Malic enzyme 96.0 0.019 4.1E-07 56.4 7.2 123 231-359 4-143 (255)
64 PRK12862 malic enzyme; Reviewe 96.0 0.05 1.1E-06 61.0 11.4 119 229-359 170-294 (763)
65 PRK15409 bifunctional glyoxyla 96.0 0.019 4.1E-07 58.0 7.4 34 247-280 140-174 (323)
66 TIGR00872 gnd_rel 6-phosphoglu 96.0 0.026 5.7E-07 56.0 8.3 107 253-378 1-116 (298)
67 PF03807 F420_oxidored: NADP o 96.0 0.01 2.2E-07 48.3 4.5 71 254-340 1-74 (96)
68 PLN02494 adenosylhomocysteinas 96.0 0.038 8.2E-07 58.7 9.8 52 229-284 234-285 (477)
69 PLN03139 formate dehydrogenase 95.9 0.032 7E-07 57.9 8.7 36 248-284 195-230 (386)
70 PRK00257 erythronate-4-phospha 95.9 0.017 3.7E-07 59.8 6.6 46 238-284 102-147 (381)
71 cd01078 NAD_bind_H4MPT_DH NADP 95.9 0.034 7.3E-07 51.4 8.0 123 230-364 6-137 (194)
72 PRK13304 L-aspartate dehydroge 95.8 0.022 4.7E-07 55.8 6.7 107 253-377 2-117 (265)
73 PTZ00142 6-phosphogluconate de 95.8 0.024 5.2E-07 60.2 7.6 109 253-377 2-123 (470)
74 COG0057 GapA Glyceraldehyde-3- 95.8 0.051 1.1E-06 55.1 9.3 96 253-358 2-123 (335)
75 PRK07574 formate dehydrogenase 95.7 0.046 1E-06 56.7 9.1 107 248-374 188-303 (385)
76 PF01113 DapB_N: Dihydrodipico 95.7 0.0039 8.5E-08 54.1 1.1 73 253-336 1-76 (124)
77 COG0499 SAM1 S-adenosylhomocys 95.7 0.029 6.3E-07 57.5 7.4 106 226-354 186-292 (420)
78 cd05212 NAD_bind_m-THF_DH_Cycl 95.7 0.17 3.7E-06 45.3 11.5 52 229-285 9-61 (140)
79 PRK13301 putative L-aspartate 95.7 0.028 6.1E-07 55.5 7.0 72 252-342 2-77 (267)
80 PRK09310 aroDE bifunctional 3- 95.7 0.17 3.6E-06 53.9 13.2 122 231-379 315-438 (477)
81 PTZ00317 NADP-dependent malic 95.7 0.24 5.3E-06 53.5 14.4 183 159-361 221-419 (559)
82 PRK14192 bifunctional 5,10-met 95.6 0.058 1.3E-06 53.7 9.0 52 228-284 139-191 (283)
83 TIGR01809 Shik-DH-AROM shikima 95.6 0.19 4.1E-06 49.7 12.6 129 232-378 107-252 (282)
84 cd05213 NAD_bind_Glutamyl_tRNA 95.6 0.08 1.7E-06 53.0 9.9 108 239-364 166-281 (311)
85 TIGR00936 ahcY adenosylhomocys 95.5 0.027 5.9E-07 58.8 6.4 109 229-360 175-285 (406)
86 PLN02520 bifunctional 3-dehydr 95.4 0.26 5.6E-06 53.1 13.5 131 231-378 352-496 (529)
87 TIGR01327 PGDH D-3-phosphoglyc 95.3 0.094 2E-06 56.4 10.0 35 247-281 133-167 (525)
88 COG0169 AroE Shikimate 5-dehyd 95.3 0.44 9.6E-06 47.5 13.9 131 232-377 108-246 (283)
89 TIGR00518 alaDH alanine dehydr 95.1 0.13 2.8E-06 53.0 9.9 35 250-285 165-199 (370)
90 PF02882 THF_DHG_CYH_C: Tetrah 95.1 0.07 1.5E-06 48.9 7.0 53 228-285 16-69 (160)
91 PF10727 Rossmann-like: Rossma 95.1 0.017 3.6E-07 51.0 2.8 73 252-341 10-82 (127)
92 PRK00676 hemA glutamyl-tRNA re 95.1 0.1 2.2E-06 53.3 8.9 102 235-360 158-264 (338)
93 PRK14194 bifunctional 5,10-met 95.0 0.064 1.4E-06 53.9 7.1 53 228-285 139-192 (301)
94 TIGR01532 E4PD_g-proteo D-eryt 95.0 0.23 4.9E-06 50.5 11.1 31 254-284 1-35 (325)
95 PRK13581 D-3-phosphoglycerate 95.0 0.085 1.9E-06 56.7 8.4 35 247-281 135-169 (526)
96 PRK10792 bifunctional 5,10-met 94.8 0.07 1.5E-06 53.2 6.8 53 228-285 139-192 (285)
97 PRK15461 NADH-dependent gamma- 94.8 0.11 2.4E-06 51.4 8.3 105 253-377 2-117 (296)
98 TIGR00873 gnd 6-phosphoglucona 94.8 0.078 1.7E-06 56.3 7.5 107 255-377 2-120 (467)
99 COG1052 LdhA Lactate dehydroge 94.8 0.12 2.6E-06 52.4 8.5 108 246-374 140-255 (324)
100 PRK13303 L-aspartate dehydroge 94.8 0.085 1.9E-06 51.7 7.2 107 253-377 2-117 (265)
101 PRK14176 bifunctional 5,10-met 94.8 0.076 1.7E-06 53.0 6.9 52 228-284 144-196 (287)
102 TIGR01505 tartro_sem_red 2-hyd 94.8 0.11 2.4E-06 51.0 8.0 105 254-378 1-116 (291)
103 PRK09424 pntA NAD(P) transhydr 94.7 0.1 2.3E-06 56.0 8.1 35 250-285 163-197 (509)
104 COG1023 Gnd Predicted 6-phosph 94.6 0.11 2.3E-06 50.9 7.2 116 253-388 1-125 (300)
105 PRK12490 6-phosphogluconate de 94.5 0.13 2.8E-06 51.0 7.9 105 254-377 2-116 (299)
106 PRK14189 bifunctional 5,10-met 94.5 0.095 2.1E-06 52.3 6.8 52 228-284 138-190 (285)
107 TIGR01546 GAPDH-II_archae glyc 94.5 0.079 1.7E-06 54.0 6.4 91 255-357 1-107 (333)
108 COG1712 Predicted dinucleotide 94.5 0.1 2.2E-06 50.6 6.6 73 253-342 1-75 (255)
109 PRK13535 erythrose 4-phosphate 94.5 0.47 1E-05 48.5 11.8 32 253-284 2-37 (336)
110 PRK12749 quinate/shikimate deh 94.4 1.1 2.4E-05 44.6 14.3 134 232-379 108-255 (288)
111 PLN02928 oxidoreductase family 94.4 0.06 1.3E-06 55.0 5.4 37 247-284 154-190 (347)
112 PRK08223 hypothetical protein; 94.4 0.11 2.4E-06 51.9 7.0 36 250-285 25-60 (287)
113 TIGR00561 pntA NAD(P) transhyd 94.4 0.29 6.3E-06 52.6 10.7 35 250-285 162-196 (511)
114 PLN02350 phosphogluconate dehy 94.4 0.11 2.4E-06 55.6 7.4 111 253-377 7-129 (493)
115 PRK12548 shikimate 5-dehydroge 94.4 0.82 1.8E-05 45.3 13.1 136 232-378 110-257 (289)
116 PLN02272 glyceraldehyde-3-phos 94.3 0.56 1.2E-05 49.3 12.3 33 253-285 86-119 (421)
117 COG1748 LYS9 Saccharopine dehy 94.3 0.1 2.2E-06 54.2 6.9 127 253-396 2-138 (389)
118 PRK08328 hypothetical protein; 94.2 0.044 9.5E-07 52.7 3.7 36 250-285 25-60 (231)
119 cd01079 NAD_bind_m-THF_DH NAD 94.2 0.15 3.2E-06 48.4 6.9 140 228-392 33-184 (197)
120 PF13241 NAD_binding_7: Putati 94.1 0.056 1.2E-06 45.3 3.7 37 248-284 3-39 (103)
121 PF00044 Gp_dh_N: Glyceraldehy 94.1 0.25 5.4E-06 44.8 8.2 33 253-285 1-34 (151)
122 PRK14188 bifunctional 5,10-met 94.1 0.15 3.2E-06 51.3 7.2 51 228-283 138-189 (296)
123 PRK14191 bifunctional 5,10-met 94.1 0.15 3.3E-06 50.9 7.2 52 228-284 137-189 (285)
124 PRK11559 garR tartronate semia 94.0 0.26 5.6E-06 48.4 8.7 105 253-377 3-118 (296)
125 PRK13940 glutamyl-tRNA reducta 94.0 0.35 7.5E-06 50.7 10.1 112 235-363 164-280 (414)
126 PRK15469 ghrA bifunctional gly 93.9 0.095 2.1E-06 52.8 5.5 35 248-282 132-166 (312)
127 COG1648 CysG Siroheme synthase 93.9 0.26 5.6E-06 47.1 8.1 81 248-343 8-88 (210)
128 TIGR01035 hemA glutamyl-tRNA r 93.8 0.31 6.7E-06 50.9 9.4 100 249-365 177-286 (417)
129 PRK12480 D-lactate dehydrogena 93.8 0.1 2.2E-06 53.0 5.4 34 248-281 142-175 (330)
130 PRK11790 D-3-phosphoglycerate 93.7 0.1 2.2E-06 54.5 5.5 35 247-281 146-180 (409)
131 PF02737 3HCDH_N: 3-hydroxyacy 93.7 0.046 1E-06 50.5 2.5 30 254-284 1-30 (180)
132 PRK00045 hemA glutamyl-tRNA re 93.6 0.3 6.6E-06 51.0 8.9 97 249-363 179-287 (423)
133 PRK14179 bifunctional 5,10-met 93.5 0.18 4E-06 50.3 6.7 52 228-284 138-190 (284)
134 TIGR01534 GAPDH-I glyceraldehy 93.5 0.9 1.9E-05 46.3 11.7 31 254-284 1-34 (327)
135 PRK05690 molybdopterin biosynt 93.5 0.18 3.9E-06 49.0 6.4 36 250-285 30-65 (245)
136 PLN02358 glyceraldehyde-3-phos 93.5 0.91 2E-05 46.4 11.8 34 253-286 6-40 (338)
137 PRK14027 quinate/shikimate deh 93.5 2 4.4E-05 42.6 14.0 129 232-378 111-250 (283)
138 PRK15425 gapA glyceraldehyde-3 93.4 0.99 2.2E-05 46.0 11.8 32 253-284 3-35 (331)
139 PRK06141 ornithine cyclodeamin 93.4 0.67 1.5E-05 46.5 10.6 117 250-380 123-243 (314)
140 PRK07340 ornithine cyclodeamin 93.4 0.99 2.2E-05 45.2 11.8 113 250-377 123-238 (304)
141 PRK07680 late competence prote 93.3 0.18 3.9E-06 49.2 6.2 111 253-380 1-119 (273)
142 PRK14177 bifunctional 5,10-met 93.3 0.28 6.2E-06 48.9 7.6 53 228-285 139-192 (284)
143 PRK11064 wecC UDP-N-acetyl-D-m 93.3 0.53 1.1E-05 49.2 9.9 31 253-284 4-34 (415)
144 PRK06719 precorrin-2 dehydroge 93.2 0.13 2.8E-06 46.7 4.6 34 248-281 9-42 (157)
145 TIGR00036 dapB dihydrodipicoli 93.2 0.33 7.1E-06 47.7 7.8 111 253-377 2-122 (266)
146 COG0677 WecC UDP-N-acetyl-D-ma 93.2 0.76 1.7E-05 48.0 10.6 115 253-377 10-151 (436)
147 PRK15116 sulfur acceptor prote 93.1 0.44 9.6E-06 47.2 8.5 36 250-285 28-63 (268)
148 KOG0089 Methylenetetrahydrofol 93.0 0.12 2.6E-06 51.2 4.3 53 229-285 147-200 (309)
149 COG2085 Predicted dinucleotide 93.0 0.29 6.4E-06 46.8 6.8 88 253-359 2-95 (211)
150 PLN02306 hydroxypyruvate reduc 92.9 0.15 3.2E-06 53.0 5.2 35 247-281 160-195 (386)
151 PF01262 AlaDh_PNT_C: Alanine 92.9 0.14 3.1E-06 46.5 4.6 34 250-284 18-51 (168)
152 PRK04207 glyceraldehyde-3-phos 92.7 0.44 9.5E-06 48.6 8.1 93 253-358 2-111 (341)
153 PRK14851 hypothetical protein; 92.6 0.39 8.5E-06 53.4 8.2 119 250-377 41-164 (679)
154 PRK06718 precorrin-2 dehydroge 92.6 0.17 3.6E-06 47.8 4.6 35 248-282 6-40 (202)
155 COG2130 Putative NADP-dependen 92.6 0.31 6.8E-06 49.1 6.7 113 223-357 129-250 (340)
156 PRK12550 shikimate 5-dehydroge 92.6 3.1 6.7E-05 41.2 13.7 122 232-378 107-237 (272)
157 KOG1370 S-adenosylhomocysteine 92.5 0.26 5.6E-06 49.8 6.0 81 249-349 211-292 (434)
158 PRK14618 NAD(P)H-dependent gly 92.5 0.68 1.5E-05 46.3 9.2 111 252-375 4-130 (328)
159 PLN03096 glyceraldehyde-3-phos 92.5 1.2 2.7E-05 46.4 11.2 32 253-284 61-95 (395)
160 PLN00203 glutamyl-tRNA reducta 92.5 0.56 1.2E-05 50.6 9.0 117 234-364 246-377 (519)
161 COG2084 MmsB 3-hydroxyisobutyr 92.5 0.48 1E-05 47.4 7.9 107 253-377 1-117 (286)
162 PF01408 GFO_IDH_MocA: Oxidore 92.4 0.28 6.2E-06 41.0 5.5 107 253-376 1-116 (120)
163 smart00846 Gp_dh_N Glyceraldeh 92.4 2.4 5.2E-05 38.2 11.7 32 253-284 1-33 (149)
164 PLN02545 3-hydroxybutyryl-CoA 92.4 0.093 2E-06 51.7 2.8 31 253-284 5-35 (295)
165 PTZ00023 glyceraldehyde-3-phos 92.4 1.3 2.8E-05 45.3 11.1 96 253-357 3-122 (337)
166 KOG2018 Predicted dinucleotide 92.4 0.4 8.6E-06 48.6 7.1 125 250-375 72-235 (430)
167 PRK14190 bifunctional 5,10-met 92.4 0.36 7.7E-06 48.2 6.9 52 228-284 138-190 (284)
168 PLN02516 methylenetetrahydrofo 92.3 0.48 1E-05 47.7 7.7 53 228-285 147-200 (299)
169 KOG0069 Glyoxylate/hydroxypyru 92.3 0.43 9.3E-06 48.8 7.4 34 246-279 156-189 (336)
170 PRK14852 hypothetical protein; 92.3 0.4 8.6E-06 55.1 7.9 120 249-377 329-453 (989)
171 PF07991 IlvN: Acetohydroxy ac 92.3 0.21 4.5E-06 46.1 4.6 37 250-287 2-38 (165)
172 COG1064 AdhP Zn-dependent alco 92.3 0.33 7.2E-06 49.6 6.6 42 242-284 158-199 (339)
173 PRK14172 bifunctional 5,10-met 92.2 0.4 8.7E-06 47.8 7.0 53 228-285 138-191 (278)
174 PRK15057 UDP-glucose 6-dehydro 92.1 0.66 1.4E-05 48.1 8.8 119 253-384 1-146 (388)
175 PRK13403 ketol-acid reductoiso 92.1 0.22 4.7E-06 50.8 5.0 32 250-281 14-45 (335)
176 COG2344 AT-rich DNA-binding pr 92.1 0.28 6.1E-06 46.3 5.3 54 232-286 65-120 (211)
177 TIGR01470 cysG_Nterm siroheme 92.0 0.21 4.6E-06 47.2 4.6 35 248-282 5-39 (205)
178 PRK14169 bifunctional 5,10-met 92.0 0.44 9.6E-06 47.5 7.0 54 227-285 135-189 (282)
179 PRK14183 bifunctional 5,10-met 92.0 0.43 9.2E-06 47.6 6.8 53 228-285 137-190 (281)
180 PLN02819 lysine-ketoglutarate 91.9 0.38 8.2E-06 55.8 7.2 130 251-397 568-720 (1042)
181 PRK14170 bifunctional 5,10-met 91.9 0.46 9.9E-06 47.5 6.9 53 228-285 137-190 (284)
182 PRK14180 bifunctional 5,10-met 91.9 0.46 1E-05 47.4 6.9 52 228-284 138-190 (282)
183 PRK07403 glyceraldehyde-3-phos 91.8 1.8 3.9E-05 44.3 11.3 32 253-284 2-36 (337)
184 PRK15059 tartronate semialdehy 91.8 0.72 1.6E-05 45.8 8.3 104 254-378 2-116 (292)
185 PF01118 Semialdhyde_dh: Semia 91.7 0.4 8.7E-06 41.1 5.7 43 254-300 1-45 (121)
186 PRK14173 bifunctional 5,10-met 91.7 0.5 1.1E-05 47.3 6.9 53 228-285 135-188 (287)
187 PRK07729 glyceraldehyde-3-phos 91.6 2.3 4.9E-05 43.7 11.7 32 253-284 3-35 (343)
188 PRK14171 bifunctional 5,10-met 91.6 0.51 1.1E-05 47.2 6.9 53 228-285 139-192 (288)
189 PRK14166 bifunctional 5,10-met 91.6 0.51 1.1E-05 47.1 6.9 53 228-285 137-190 (282)
190 PRK14186 bifunctional 5,10-met 91.6 0.51 1.1E-05 47.4 7.0 51 229-284 139-190 (297)
191 PRK14178 bifunctional 5,10-met 91.6 0.45 9.8E-06 47.4 6.5 53 228-285 132-185 (279)
192 PRK05479 ketol-acid reductoiso 91.5 0.26 5.7E-06 50.2 4.9 31 250-280 15-45 (330)
193 PRK14187 bifunctional 5,10-met 91.2 0.58 1.3E-05 47.0 6.9 52 229-285 141-193 (294)
194 COG5322 Predicted dehydrogenas 90.9 0.47 1E-05 47.3 5.8 53 229-281 144-197 (351)
195 PRK08605 D-lactate dehydrogena 90.9 0.31 6.7E-06 49.4 4.8 34 247-280 141-175 (332)
196 PLN02616 tetrahydrofolate dehy 90.9 0.76 1.6E-05 47.4 7.5 54 227-285 210-264 (364)
197 TIGR00465 ilvC ketol-acid redu 90.9 0.37 8E-06 48.7 5.3 34 250-283 1-34 (314)
198 TIGR02356 adenyl_thiF thiazole 90.9 0.39 8.4E-06 45.2 5.1 36 250-285 19-54 (202)
199 PRK10669 putative cation:proto 90.9 0.67 1.4E-05 50.0 7.5 105 253-376 418-531 (558)
200 PRK14182 bifunctional 5,10-met 90.8 0.69 1.5E-05 46.2 7.0 53 228-285 137-190 (282)
201 PRK14982 acyl-ACP reductase; P 90.8 0.71 1.5E-05 47.3 7.3 115 230-364 133-254 (340)
202 PRK05472 redox-sensing transcr 90.8 0.48 1E-05 44.8 5.6 53 232-285 65-119 (213)
203 PRK08300 acetaldehyde dehydrog 90.5 0.56 1.2E-05 47.3 6.0 94 251-360 3-107 (302)
204 PRK06046 alanine dehydrogenase 90.4 2.7 5.8E-05 42.5 10.9 113 251-377 128-244 (326)
205 PRK03659 glutathione-regulated 90.3 0.71 1.5E-05 50.5 7.2 110 253-381 401-520 (601)
206 PRK08955 glyceraldehyde-3-phos 90.3 4.3 9.2E-05 41.5 12.3 32 253-284 3-35 (334)
207 TIGR02354 thiF_fam2 thiamine b 90.1 0.44 9.4E-06 44.9 4.7 36 250-285 19-54 (200)
208 TIGR01921 DAP-DH diaminopimela 90.1 0.48 1.1E-05 48.2 5.2 34 252-285 3-37 (324)
209 COG0686 Ald Alanine dehydrogen 90.1 1.2 2.7E-05 45.2 8.0 45 250-305 166-210 (371)
210 PRK07877 hypothetical protein; 90.0 0.68 1.5E-05 51.9 6.8 117 250-377 105-225 (722)
211 KOG1196 Predicted NAD-dependen 90.0 1.1 2.3E-05 45.4 7.4 57 222-285 131-188 (343)
212 PRK07530 3-hydroxybutyryl-CoA 89.8 0.78 1.7E-05 45.1 6.5 31 253-284 5-35 (292)
213 PRK12475 thiamine/molybdopteri 89.8 0.43 9.3E-06 48.6 4.7 36 250-285 22-57 (338)
214 TIGR01692 HIBADH 3-hydroxyisob 89.8 0.96 2.1E-05 44.5 7.0 102 257-378 1-113 (288)
215 PRK07417 arogenate dehydrogena 89.8 1.1 2.5E-05 43.8 7.5 69 253-339 1-69 (279)
216 PF00070 Pyr_redox: Pyridine n 89.7 1.3 2.8E-05 34.9 6.4 42 254-298 1-42 (80)
217 PRK14193 bifunctional 5,10-met 89.7 0.93 2E-05 45.3 6.8 53 228-285 138-193 (284)
218 PRK08268 3-hydroxy-acyl-CoA de 89.6 0.35 7.7E-06 51.9 4.1 32 253-285 8-39 (507)
219 PLN02237 glyceraldehyde-3-phos 89.5 3.7 8E-05 43.5 11.4 32 253-284 76-110 (442)
220 PF00899 ThiF: ThiF family; I 89.4 0.37 8E-06 41.9 3.4 34 252-285 2-35 (135)
221 KOG0068 D-3-phosphoglycerate d 89.3 0.32 6.9E-06 49.7 3.2 35 246-280 140-174 (406)
222 PRK06476 pyrroline-5-carboxyla 89.3 1.6 3.5E-05 42.1 8.1 69 253-338 1-72 (258)
223 PRK14181 bifunctional 5,10-met 89.2 1.1 2.3E-05 44.9 6.9 53 228-285 133-190 (287)
224 PRK14167 bifunctional 5,10-met 89.2 1 2.2E-05 45.3 6.7 53 228-285 137-194 (297)
225 PLN02897 tetrahydrofolate dehy 89.2 0.96 2.1E-05 46.4 6.6 52 228-284 194-246 (345)
226 cd00757 ThiF_MoeB_HesA_family 89.2 0.54 1.2E-05 44.9 4.6 36 250-285 19-54 (228)
227 PRK02472 murD UDP-N-acetylmura 89.0 0.64 1.4E-05 48.2 5.5 36 249-285 2-37 (447)
228 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.0 0.36 7.9E-06 51.8 3.6 32 253-285 6-37 (503)
229 PRK05600 thiamine biosynthesis 88.9 0.59 1.3E-05 48.2 5.0 36 250-285 39-74 (370)
230 PRK08762 molybdopterin biosynt 88.9 0.76 1.7E-05 47.2 5.8 36 250-285 133-168 (376)
231 PLN02712 arogenate dehydrogena 88.9 0.7 1.5E-05 51.3 5.8 36 246-281 363-398 (667)
232 PRK05579 bifunctional phosphop 88.8 3 6.5E-05 43.6 10.1 35 248-282 184-235 (399)
233 PRK08289 glyceraldehyde-3-phos 88.7 10 0.00023 40.5 14.1 52 235-286 107-166 (477)
234 PRK08618 ornithine cyclodeamin 88.7 3.7 8E-05 41.4 10.5 112 251-377 126-242 (325)
235 PRK14184 bifunctional 5,10-met 88.7 1.1 2.3E-05 44.9 6.5 53 228-285 137-194 (286)
236 PRK09260 3-hydroxybutyryl-CoA 88.6 0.43 9.3E-06 46.9 3.6 32 253-285 2-33 (288)
237 PRK08293 3-hydroxybutyryl-CoA 88.6 0.48 1E-05 46.6 3.9 31 253-284 4-34 (287)
238 PRK03562 glutathione-regulated 88.6 1.1 2.3E-05 49.4 7.0 107 252-377 400-515 (621)
239 PRK07819 3-hydroxybutyryl-CoA 88.5 0.4 8.6E-06 47.5 3.3 31 253-284 6-36 (286)
240 PTZ00082 L-lactate dehydrogena 88.4 0.59 1.3E-05 47.2 4.6 36 250-286 4-40 (321)
241 PF01210 NAD_Gly3P_dh_N: NAD-d 88.4 1.3 2.9E-05 39.6 6.4 71 254-336 1-78 (157)
242 PRK01438 murD UDP-N-acetylmura 88.4 0.8 1.7E-05 48.2 5.7 40 245-285 9-48 (480)
243 PRK09496 trkA potassium transp 88.4 1.9 4.1E-05 44.7 8.4 117 249-381 228-353 (453)
244 PLN02688 pyrroline-5-carboxyla 88.3 1.7 3.6E-05 42.0 7.4 27 253-279 1-31 (266)
245 COG0190 FolD 5,10-methylene-te 88.3 1.1 2.5E-05 44.6 6.3 53 228-285 136-189 (283)
246 PRK14174 bifunctional 5,10-met 88.3 1.3 2.8E-05 44.5 6.8 52 228-284 139-195 (295)
247 PRK06153 hypothetical protein; 88.2 0.3 6.5E-06 50.8 2.3 36 250-285 174-209 (393)
248 PRK04690 murD UDP-N-acetylmura 88.1 0.69 1.5E-05 48.9 5.0 35 250-285 6-40 (468)
249 PF03721 UDPG_MGDP_dh_N: UDP-g 88.1 0.67 1.5E-05 43.1 4.3 120 253-382 1-155 (185)
250 COG0569 TrkA K+ transport syst 87.9 0.69 1.5E-05 44.3 4.4 114 253-382 1-124 (225)
251 PRK14168 bifunctional 5,10-met 87.8 1.4 3E-05 44.3 6.6 53 228-285 141-198 (297)
252 KOG2380 Prephenate dehydrogena 87.8 0.61 1.3E-05 47.9 4.0 31 251-281 51-81 (480)
253 COG1179 Dinucleotide-utilizing 87.7 0.55 1.2E-05 46.0 3.6 36 250-285 28-63 (263)
254 TIGR02355 moeB molybdopterin s 87.7 0.73 1.6E-05 44.6 4.5 36 250-285 22-57 (240)
255 PF13380 CoA_binding_2: CoA bi 87.6 2.7 5.8E-05 36.1 7.5 99 253-378 1-108 (116)
256 PF03435 Saccharop_dh: Sacchar 87.6 0.5 1.1E-05 48.3 3.4 120 255-391 1-133 (386)
257 cd00755 YgdL_like Family of ac 87.5 0.73 1.6E-05 44.6 4.4 36 250-285 9-44 (231)
258 PRK05717 oxidoreductase; Valid 87.5 1.1 2.4E-05 42.4 5.5 34 248-281 6-40 (255)
259 PRK14185 bifunctional 5,10-met 87.3 1.6 3.5E-05 43.8 6.7 53 228-285 137-194 (293)
260 PRK14106 murD UDP-N-acetylmura 87.2 1 2.2E-05 46.8 5.5 36 249-285 2-37 (450)
261 PRK07688 thiamine/molybdopteri 86.6 0.88 1.9E-05 46.4 4.6 36 250-285 22-57 (339)
262 PRK07066 3-hydroxybutyryl-CoA 86.6 0.94 2E-05 45.9 4.7 31 253-284 8-38 (321)
263 PRK08644 thiamine biosynthesis 86.6 0.91 2E-05 43.1 4.4 36 250-285 26-61 (212)
264 KOG0455 Homoserine dehydrogena 86.5 1.4 3.1E-05 43.5 5.7 42 251-292 2-52 (364)
265 cd01492 Aos1_SUMO Ubiquitin ac 86.4 0.79 1.7E-05 43.0 3.9 36 250-285 19-54 (197)
266 PRK05225 ketol-acid reductoiso 86.4 0.37 8E-06 51.2 1.8 30 250-279 34-63 (487)
267 COG1250 FadB 3-hydroxyacyl-CoA 86.3 0.83 1.8E-05 46.1 4.1 33 252-285 3-35 (307)
268 PRK07679 pyrroline-5-carboxyla 86.2 2.6 5.6E-05 41.3 7.5 25 251-275 2-26 (279)
269 COG0345 ProC Pyrroline-5-carbo 86.2 2 4.2E-05 42.6 6.6 115 253-385 2-124 (266)
270 PLN02256 arogenate dehydrogena 86.1 1.8 3.8E-05 43.5 6.3 33 249-281 33-65 (304)
271 cd08239 THR_DH_like L-threonin 86.0 5 0.00011 39.5 9.6 32 250-281 162-194 (339)
272 PRK14619 NAD(P)H-dependent gly 86.0 1.2 2.5E-05 44.4 5.1 34 251-285 3-36 (308)
273 PRK04148 hypothetical protein; 86.0 1.6 3.5E-05 39.0 5.3 34 250-285 15-48 (134)
274 PTZ00353 glycosomal glyceralde 85.9 7.6 0.00016 39.9 10.9 32 253-284 3-35 (342)
275 PRK09496 trkA potassium transp 85.9 2 4.3E-05 44.5 6.9 31 253-284 1-31 (453)
276 COG0673 MviM Predicted dehydro 85.7 5 0.00011 39.6 9.3 111 251-377 2-122 (342)
277 cd08230 glucose_DH Glucose deh 85.7 2.4 5.3E-05 42.4 7.2 33 250-282 171-203 (355)
278 cd01485 E1-1_like Ubiquitin ac 85.7 1 2.2E-05 42.3 4.2 36 250-285 17-52 (198)
279 TIGR01832 kduD 2-deoxy-D-gluco 85.4 1.5 3.2E-05 41.0 5.2 34 249-282 2-36 (248)
280 TIGR03628 arch_S11P archaeal r 85.4 3.1 6.7E-05 36.2 6.7 67 223-289 36-111 (114)
281 TIGR01202 bchC 2-desacetyl-2-h 85.4 2.6 5.6E-05 41.5 7.1 35 250-284 143-177 (308)
282 PRK06928 pyrroline-5-carboxyla 85.3 2.2 4.8E-05 41.9 6.5 112 253-382 2-124 (277)
283 PRK01710 murD UDP-N-acetylmura 85.2 1.2 2.7E-05 46.7 5.0 35 250-285 12-46 (458)
284 KOG0409 Predicted dehydrogenas 85.1 1.7 3.8E-05 43.8 5.7 66 250-334 33-98 (327)
285 PRK12491 pyrroline-5-carboxyla 85.1 2.9 6.4E-05 41.1 7.3 111 253-382 3-124 (272)
286 PRK06138 short chain dehydroge 85.0 1.6 3.5E-05 40.7 5.2 34 249-282 2-36 (252)
287 PRK07060 short chain dehydroge 84.9 1.7 3.8E-05 40.3 5.4 34 248-281 5-39 (245)
288 PRK08628 short chain dehydroge 84.8 1.6 3.4E-05 41.2 5.1 35 247-281 2-37 (258)
289 COG1063 Tdh Threonine dehydrog 84.8 2.9 6.3E-05 42.5 7.3 34 252-285 169-202 (350)
290 PRK12826 3-ketoacyl-(acyl-carr 84.7 1.6 3.6E-05 40.5 5.1 35 249-283 3-38 (251)
291 PLN02586 probable cinnamyl alc 84.6 2.9 6.4E-05 42.2 7.3 35 250-284 182-216 (360)
292 PRK00094 gpsA NAD(P)H-dependen 84.5 3.2 6.9E-05 40.9 7.3 31 253-284 2-32 (325)
293 PRK04308 murD UDP-N-acetylmura 84.5 1.6 3.5E-05 45.4 5.5 35 250-285 3-37 (445)
294 PRK05786 fabG 3-ketoacyl-(acyl 84.4 1.9 4.1E-05 39.9 5.4 33 249-281 2-35 (238)
295 TIGR02371 ala_DH_arch alanine 84.4 9.4 0.0002 38.6 10.7 113 251-379 127-244 (325)
296 cd01483 E1_enzyme_family Super 84.4 1.5 3.3E-05 38.3 4.5 32 254-285 1-32 (143)
297 cd08281 liver_ADH_like1 Zinc-d 84.3 6.8 0.00015 39.5 9.8 31 251-281 191-222 (371)
298 KOG2653 6-phosphogluconate deh 84.3 0.99 2.2E-05 46.6 3.6 109 253-377 7-127 (487)
299 PRK09607 rps11p 30S ribosomal 84.2 3.8 8.3E-05 36.5 6.9 67 223-289 43-118 (132)
300 PLN02858 fructose-bisphosphate 84.2 3.4 7.4E-05 49.7 8.5 107 251-377 3-122 (1378)
301 PRK12742 oxidoreductase; Provi 84.2 5.5 0.00012 36.8 8.4 33 249-281 3-36 (237)
302 PRK07523 gluconate 5-dehydroge 84.2 1.9 4E-05 40.7 5.3 35 249-284 7-42 (255)
303 PRK05557 fabG 3-ketoacyl-(acyl 84.1 2.2 4.8E-05 39.4 5.7 36 249-284 2-38 (248)
304 PRK07531 bifunctional 3-hydrox 84.1 3 6.4E-05 44.6 7.3 31 253-284 5-35 (495)
305 COG1004 Ugd Predicted UDP-gluc 84.0 7 0.00015 41.0 9.7 119 253-382 1-153 (414)
306 PLN02858 fructose-bisphosphate 84.0 3.4 7.4E-05 49.7 8.4 106 252-377 324-442 (1378)
307 PRK12828 short chain dehydroge 84.0 1.9 4.2E-05 39.6 5.2 33 249-281 4-37 (239)
308 PF02629 CoA_binding: CoA bind 84.0 1 2.3E-05 37.1 3.1 35 252-286 3-38 (96)
309 PRK07231 fabG 3-ketoacyl-(acyl 84.0 2 4.3E-05 40.0 5.3 35 249-284 2-37 (251)
310 PRK11880 pyrroline-5-carboxyla 83.9 3.2 7E-05 40.0 7.0 23 253-275 3-25 (267)
311 TIGR03215 ac_ald_DH_ac acetald 83.9 2 4.3E-05 42.9 5.5 33 253-285 2-35 (285)
312 PRK02006 murD UDP-N-acetylmura 83.9 1.6 3.5E-05 46.3 5.2 36 249-285 4-39 (498)
313 PLN02240 UDP-glucose 4-epimera 83.8 1.9 4.1E-05 42.7 5.4 34 249-282 2-36 (352)
314 PRK11579 putative oxidoreducta 83.8 5.2 0.00011 40.3 8.6 33 253-285 5-39 (346)
315 PF02254 TrkA_N: TrkA-N domain 83.8 1.9 4.1E-05 35.9 4.6 103 255-376 1-112 (116)
316 PRK00436 argC N-acetyl-gamma-g 83.8 3.7 8E-05 41.8 7.5 96 253-360 3-102 (343)
317 COG3804 Uncharacterized conser 83.8 3.5 7.6E-05 41.5 7.0 44 253-299 3-47 (350)
318 COG0059 IlvC Ketol-acid reduct 83.5 1 2.2E-05 45.6 3.3 54 250-304 16-73 (338)
319 PRK12938 acetyacetyl-CoA reduc 83.5 2.2 4.8E-05 39.8 5.4 34 250-283 1-35 (246)
320 PLN02206 UDP-glucuronate decar 83.5 1.8 3.8E-05 45.6 5.2 37 246-282 113-150 (442)
321 PLN02896 cinnamyl-alcohol dehy 83.4 2.2 4.7E-05 42.8 5.6 37 247-283 5-42 (353)
322 PF03853 YjeF_N: YjeF-related 83.3 10 0.00022 34.6 9.6 47 230-280 7-57 (169)
323 PRK05597 molybdopterin biosynt 83.3 1.5 3.3E-05 44.8 4.6 36 250-285 26-61 (355)
324 PRK08217 fabG 3-ketoacyl-(acyl 83.1 2.4 5.1E-05 39.5 5.5 35 249-284 2-37 (253)
325 PRK14620 NAD(P)H-dependent gly 83.0 3.8 8.2E-05 40.9 7.2 31 253-284 1-31 (326)
326 PRK07634 pyrroline-5-carboxyla 82.9 4.1 9E-05 38.6 7.1 92 251-360 3-102 (245)
327 PRK00141 murD UDP-N-acetylmura 82.8 1.9 4.1E-05 45.7 5.2 35 250-285 13-47 (473)
328 PRK03369 murD UDP-N-acetylmura 82.7 2 4.2E-05 45.8 5.3 35 250-285 10-44 (488)
329 PRK07411 hypothetical protein; 82.6 1.5 3.3E-05 45.5 4.3 36 250-285 36-71 (390)
330 PRK06523 short chain dehydroge 82.6 2.3 4.9E-05 40.2 5.2 34 248-281 5-39 (260)
331 COG0362 Gnd 6-phosphogluconate 82.4 2.7 5.8E-05 44.1 5.8 109 253-377 4-124 (473)
332 PRK06841 short chain dehydroge 82.4 2.5 5.3E-05 39.7 5.3 33 249-281 12-45 (255)
333 PRK08416 7-alpha-hydroxysteroi 82.4 2.5 5.5E-05 40.1 5.5 37 248-284 4-41 (260)
334 PRK06522 2-dehydropantoate 2-r 82.3 2 4.4E-05 41.8 4.8 29 253-281 1-29 (304)
335 PRK06300 enoyl-(acyl carrier p 82.2 2.3 5E-05 42.4 5.2 35 248-283 4-41 (299)
336 PRK09186 flagellin modificatio 82.2 2.4 5.2E-05 39.8 5.1 32 250-281 2-34 (256)
337 PRK13394 3-hydroxybutyrate deh 82.1 2.5 5.4E-05 39.7 5.3 33 249-281 4-37 (262)
338 TIGR02622 CDP_4_6_dhtase CDP-g 82.0 2.2 4.8E-05 42.6 5.1 33 250-282 2-35 (349)
339 PRK07774 short chain dehydroge 82.0 2.6 5.7E-05 39.3 5.3 33 249-281 3-36 (250)
340 PRK08703 short chain dehydroge 82.0 2.6 5.7E-05 39.3 5.3 33 249-281 3-36 (239)
341 PRK08642 fabG 3-ketoacyl-(acyl 82.0 2.9 6.2E-05 39.1 5.6 35 249-283 2-37 (253)
342 TIGR01915 npdG NADPH-dependent 81.9 2.3 4.9E-05 40.2 4.9 97 253-361 1-105 (219)
343 PRK06125 short chain dehydroge 81.9 2.7 5.9E-05 39.8 5.5 36 248-284 3-39 (259)
344 PRK06949 short chain dehydroge 81.8 2.8 6E-05 39.4 5.4 34 248-281 5-39 (258)
345 PRK06035 3-hydroxyacyl-CoA deh 81.8 2.1 4.6E-05 42.1 4.8 31 253-284 4-34 (291)
346 PRK08291 ectoine utilization p 81.8 16 0.00035 36.8 11.3 118 251-381 131-252 (330)
347 PRK01390 murD UDP-N-acetylmura 81.7 2.1 4.7E-05 44.8 5.1 35 250-285 7-41 (460)
348 PRK09072 short chain dehydroge 81.7 2.8 6E-05 39.8 5.4 33 249-281 2-35 (263)
349 PRK12829 short chain dehydroge 81.6 2.5 5.4E-05 39.8 5.0 32 250-281 9-41 (264)
350 PTZ00117 malate dehydrogenase; 81.6 1.9 4E-05 43.5 4.4 35 250-285 3-38 (319)
351 PRK07878 molybdopterin biosynt 81.5 1.8 3.9E-05 44.9 4.4 36 250-285 40-75 (392)
352 PLN02427 UDP-apiose/xylose syn 81.4 2.5 5.4E-05 42.9 5.3 37 246-282 8-46 (386)
353 PRK15181 Vi polysaccharide bio 81.2 2.4 5.2E-05 42.5 5.1 36 248-283 11-47 (348)
354 PRK05562 precorrin-2 dehydroge 81.2 2.7 5.9E-05 40.6 5.2 36 249-284 22-57 (223)
355 cd01974 Nitrogenase_MoFe_beta 81.2 32 0.00069 36.1 13.6 36 248-283 299-334 (435)
356 PLN02819 lysine-ketoglutarate 81.0 6.7 0.00014 45.9 9.1 28 251-278 202-229 (1042)
357 TIGR02441 fa_ox_alpha_mit fatt 81.0 1.2 2.6E-05 50.0 3.1 32 253-285 336-367 (737)
358 KOG0022 Alcohol dehydrogenase, 80.8 1.6 3.4E-05 44.5 3.5 47 228-281 176-223 (375)
359 PRK08993 2-deoxy-D-gluconate 3 80.8 2.9 6.3E-05 39.6 5.2 33 249-281 7-40 (253)
360 PRK08063 enoyl-(acyl carrier p 80.7 3.2 6.9E-05 38.8 5.4 35 250-284 2-37 (250)
361 PRK08945 putative oxoacyl-(acy 80.7 2.7 5.8E-05 39.4 4.9 34 250-284 10-44 (247)
362 TIGR03736 PRTRC_ThiF PRTRC sys 80.7 2.3 4.9E-05 41.6 4.5 26 251-276 10-35 (244)
363 PRK05876 short chain dehydroge 80.6 3 6.6E-05 40.3 5.4 35 249-284 3-38 (275)
364 PLN02695 GDP-D-mannose-3',5'-e 80.6 2.5 5.5E-05 43.0 5.0 32 251-282 20-52 (370)
365 PRK11730 fadB multifunctional 80.6 1.6 3.6E-05 48.8 3.9 32 253-285 314-345 (715)
366 PRK08339 short chain dehydroge 80.5 3.1 6.7E-05 39.9 5.4 36 248-284 4-40 (263)
367 PRK06172 short chain dehydroge 80.5 3.2 7E-05 39.0 5.4 35 249-284 4-39 (253)
368 TIGR02992 ectoine_eutC ectoine 80.5 9.3 0.0002 38.5 9.0 114 251-379 128-247 (326)
369 PF13460 NAD_binding_10: NADH( 80.5 2.8 6.1E-05 37.3 4.8 31 255-285 1-32 (183)
370 TIGR01850 argC N-acetyl-gamma- 80.5 5.4 0.00012 40.7 7.3 33 253-285 1-35 (346)
371 TIGR02437 FadB fatty oxidation 80.4 1.6 3.5E-05 48.8 3.8 32 253-285 314-345 (714)
372 PRK12429 3-hydroxybutyrate deh 80.4 3.2 6.9E-05 38.8 5.3 32 250-281 2-34 (258)
373 PRK12937 short chain dehydroge 80.4 3.6 7.8E-05 38.2 5.6 35 249-283 2-37 (245)
374 PRK12746 short chain dehydroge 80.4 3.5 7.6E-05 38.6 5.6 33 249-281 3-36 (254)
375 PRK05309 30S ribosomal protein 80.3 6.4 0.00014 34.8 6.8 64 226-289 53-117 (128)
376 PRK06124 gluconate 5-dehydroge 80.2 3.3 7.2E-05 38.9 5.4 36 248-284 7-43 (256)
377 KOG0023 Alcohol dehydrogenase, 80.2 3.1 6.7E-05 42.5 5.3 133 241-375 172-323 (360)
378 PRK10206 putative oxidoreducta 80.2 3.1 6.7E-05 42.2 5.5 33 253-285 2-37 (344)
379 PRK08264 short chain dehydroge 80.2 3.1 6.8E-05 38.6 5.2 33 249-281 3-37 (238)
380 TIGR03325 BphB_TodD cis-2,3-di 80.2 3.3 7.1E-05 39.3 5.4 33 249-281 2-35 (262)
381 PRK07236 hypothetical protein; 80.2 3 6.5E-05 42.3 5.4 41 250-291 4-44 (386)
382 cd01487 E1_ThiF_like E1_ThiF_l 80.2 2.4 5.3E-05 38.9 4.3 32 254-285 1-32 (174)
383 PRK12770 putative glutamate sy 80.1 7.3 0.00016 39.2 8.1 36 250-285 170-205 (352)
384 PRK05653 fabG 3-ketoacyl-(acyl 80.1 3.5 7.6E-05 38.0 5.4 34 249-282 2-36 (246)
385 PLN02514 cinnamyl-alcohol dehy 80.0 5.3 0.00012 40.2 7.1 42 243-284 172-213 (357)
386 PRK07890 short chain dehydroge 79.9 3.1 6.6E-05 39.1 5.0 34 250-284 3-37 (258)
387 PRK06057 short chain dehydroge 79.9 3.2 7E-05 39.2 5.2 32 250-281 5-37 (255)
388 TIGR03632 bact_S11 30S ribosom 79.8 6.8 0.00015 33.5 6.6 65 225-289 35-100 (108)
389 CHL00041 rps11 ribosomal prote 79.7 7 0.00015 34.0 6.7 64 226-289 49-113 (116)
390 PLN02986 cinnamyl-alcohol dehy 79.7 3.4 7.3E-05 40.6 5.5 35 250-284 3-38 (322)
391 PTZ00434 cytosolic glyceraldeh 79.7 8.1 0.00018 40.0 8.3 32 253-284 4-40 (361)
392 PRK07533 enoyl-(acyl carrier p 79.5 3.4 7.3E-05 39.5 5.2 36 249-285 7-45 (258)
393 PRK05875 short chain dehydroge 79.5 3.6 7.8E-05 39.2 5.4 33 249-281 4-37 (276)
394 PRK00683 murD UDP-N-acetylmura 79.5 2.9 6.2E-05 43.4 5.1 34 251-285 2-35 (418)
395 PRK07806 short chain dehydroge 79.5 4 8.6E-05 38.1 5.6 34 249-282 3-37 (248)
396 PRK08936 glucose-1-dehydrogena 79.4 4.1 8.8E-05 38.6 5.7 35 249-283 4-39 (261)
397 PLN02653 GDP-mannose 4,6-dehyd 79.3 3 6.4E-05 41.4 5.0 34 249-282 3-37 (340)
398 PRK06196 oxidoreductase; Provi 79.3 3.6 7.9E-05 40.5 5.5 35 247-281 21-56 (315)
399 PRK06398 aldose dehydrogenase; 79.3 3.5 7.7E-05 39.2 5.3 33 249-281 3-36 (258)
400 PRK06130 3-hydroxybutyryl-CoA 79.2 2.9 6.3E-05 41.4 4.8 31 253-284 5-35 (311)
401 COG1004 Ugd Predicted UDP-gluc 79.2 4.7 0.0001 42.3 6.4 92 250-360 308-411 (414)
402 PRK06505 enoyl-(acyl carrier p 79.2 3.2 6.9E-05 40.2 5.0 34 250-284 5-41 (271)
403 COG1089 Gmd GDP-D-mannose dehy 79.1 6.5 0.00014 39.8 7.0 94 252-346 2-105 (345)
404 PRK08213 gluconate 5-dehydroge 78.9 3.7 8.1E-05 38.7 5.3 34 248-281 8-42 (259)
405 COG0771 MurD UDP-N-acetylmuram 78.8 2.6 5.7E-05 44.7 4.6 129 250-393 5-154 (448)
406 PLN02712 arogenate dehydrogena 78.8 3 6.6E-05 46.4 5.3 32 250-281 50-81 (667)
407 PLN00141 Tic62-NAD(P)-related 78.8 3.5 7.5E-05 39.2 5.1 34 250-283 15-49 (251)
408 PRK05808 3-hydroxybutyryl-CoA 78.8 2.8 6.2E-05 40.9 4.6 32 253-285 4-35 (282)
409 TIGR02130 dapB_plant dihydrodi 78.8 6 0.00013 39.5 6.8 116 254-381 2-126 (275)
410 PRK06550 fabG 3-ketoacyl-(acyl 78.8 3.7 8E-05 38.0 5.1 33 249-281 2-35 (235)
411 PRK00421 murC UDP-N-acetylmura 78.8 2.9 6.2E-05 43.9 4.9 35 250-285 5-40 (461)
412 PRK06823 ornithine cyclodeamin 78.8 16 0.00034 36.9 10.0 149 214-380 93-246 (315)
413 PLN02214 cinnamoyl-CoA reducta 78.7 3.4 7.4E-05 41.4 5.2 33 250-282 8-41 (342)
414 PRK07576 short chain dehydroge 78.7 3.8 8.3E-05 39.2 5.3 33 249-281 6-39 (264)
415 PRK09135 pteridine reductase; 78.7 3.7 8.1E-05 38.0 5.1 33 250-282 4-37 (249)
416 PLN02662 cinnamyl-alcohol dehy 78.7 3 6.5E-05 40.7 4.7 32 251-282 3-35 (322)
417 PRK09880 L-idonate 5-dehydroge 78.7 6.2 0.00014 39.3 7.1 34 250-284 168-202 (343)
418 PRK06223 malate dehydrogenase; 78.6 2.3 5E-05 42.1 3.9 31 253-284 3-34 (307)
419 PRK12825 fabG 3-ketoacyl-(acyl 78.6 4.2 9.1E-05 37.4 5.4 35 250-284 4-39 (249)
420 PRK06197 short chain dehydroge 78.6 3.3 7.1E-05 40.5 4.9 34 249-282 13-47 (306)
421 PRK07856 short chain dehydroge 78.6 4.1 9E-05 38.3 5.5 34 248-281 2-36 (252)
422 PRK06077 fabG 3-ketoacyl-(acyl 78.5 4.5 9.7E-05 37.7 5.6 35 249-283 3-38 (252)
423 PRK07062 short chain dehydroge 78.5 4 8.6E-05 38.7 5.4 34 248-281 4-38 (265)
424 PRK06249 2-dehydropantoate 2-r 78.4 2.4 5.3E-05 42.2 4.0 33 250-282 3-35 (313)
425 PRK07814 short chain dehydroge 78.4 3.9 8.4E-05 38.9 5.3 35 249-284 7-42 (263)
426 TIGR03206 benzo_BadH 2-hydroxy 78.3 3.8 8.3E-05 38.1 5.1 32 250-281 1-33 (250)
427 PRK07831 short chain dehydroge 78.3 3.7 8E-05 38.9 5.1 34 250-284 15-50 (262)
428 PRK12939 short chain dehydroge 78.2 4.1 9E-05 37.8 5.3 33 249-281 4-37 (250)
429 PRK05867 short chain dehydroge 78.1 4 8.6E-05 38.5 5.2 33 249-281 6-39 (253)
430 PRK06849 hypothetical protein; 78.1 2.8 6.2E-05 42.8 4.5 34 251-285 3-37 (389)
431 TIGR03366 HpnZ_proposed putati 78.1 7.2 0.00016 37.7 7.1 34 250-284 119-153 (280)
432 PRK07577 short chain dehydroge 78.1 4 8.7E-05 37.7 5.1 32 251-282 2-34 (234)
433 PRK12481 2-deoxy-D-gluconate 3 78.1 3.9 8.5E-05 38.8 5.2 33 249-281 5-38 (251)
434 PRK07035 short chain dehydroge 78.1 4.1 8.9E-05 38.2 5.3 33 249-281 5-38 (252)
435 TIGR03026 NDP-sugDHase nucleot 78.1 2.8 6.1E-05 43.4 4.5 32 253-285 1-32 (411)
436 PRK12771 putative glutamate sy 78.0 3.2 6.9E-05 44.9 5.0 34 250-284 135-168 (564)
437 PRK08085 gluconate 5-dehydroge 78.0 4.2 9.2E-05 38.2 5.4 35 249-284 6-41 (254)
438 PRK06935 2-deoxy-D-gluconate 3 78.0 4.2 9.1E-05 38.4 5.4 33 249-281 12-45 (258)
439 PRK05866 short chain dehydroge 78.0 4.3 9.3E-05 39.8 5.6 34 248-281 36-70 (293)
440 PRK09620 hypothetical protein; 77.8 4.2 9.1E-05 39.2 5.3 34 250-283 1-51 (229)
441 PRK06194 hypothetical protein; 77.8 4.1 8.9E-05 39.1 5.3 33 249-281 3-36 (287)
442 PRK06463 fabG 3-ketoacyl-(acyl 77.7 4.9 0.00011 37.9 5.7 34 249-282 4-38 (255)
443 KOG1502 Flavonol reductase/cin 77.7 5.7 0.00012 40.6 6.4 34 251-284 5-39 (327)
444 PRK07326 short chain dehydroge 77.6 4 8.8E-05 37.7 5.0 32 250-281 4-36 (237)
445 PRK07984 enoyl-(acyl carrier p 77.6 4 8.6E-05 39.4 5.1 34 250-284 4-40 (262)
446 PRK06171 sorbitol-6-phosphate 77.5 4.3 9.2E-05 38.5 5.3 33 249-281 6-39 (266)
447 PRK12823 benD 1,6-dihydroxycyc 77.5 4.1 8.9E-05 38.4 5.1 35 249-284 5-40 (260)
448 PRK07825 short chain dehydroge 77.4 4.5 9.9E-05 38.5 5.5 33 249-281 2-35 (273)
449 PRK06500 short chain dehydroge 77.4 4.1 9E-05 37.9 5.1 32 250-281 4-36 (249)
450 PLN02730 enoyl-[acyl-carrier-p 77.4 3.6 7.8E-05 41.2 4.9 34 247-280 4-40 (303)
451 TIGR01381 E1_like_apg7 E1-like 77.4 2.8 6.1E-05 46.4 4.4 36 250-285 336-371 (664)
452 PRK10637 cysG siroheme synthas 77.3 3.2 6.9E-05 43.9 4.7 35 248-282 8-42 (457)
453 PRK08226 short chain dehydroge 77.3 4.5 9.7E-05 38.2 5.3 33 249-281 3-36 (263)
454 PRK12748 3-ketoacyl-(acyl-carr 77.3 4 8.6E-05 38.6 4.9 33 249-281 2-37 (256)
455 PRK05872 short chain dehydroge 77.2 4.6 9.9E-05 39.5 5.5 33 249-281 6-39 (296)
456 PRK07478 short chain dehydroge 77.2 4.6 0.0001 38.0 5.4 33 249-281 3-36 (254)
457 TIGR03570 NeuD_NnaD sugar O-ac 77.1 4.1 8.8E-05 36.7 4.8 32 254-285 1-32 (201)
458 PRK07792 fabG 3-ketoacyl-(acyl 77.1 4.6 0.0001 39.8 5.5 36 248-284 8-44 (306)
459 PRK08265 short chain dehydroge 77.1 4.7 0.0001 38.4 5.5 35 249-284 3-38 (261)
460 PRK06079 enoyl-(acyl carrier p 77.1 4 8.6E-05 38.8 4.9 32 250-281 5-39 (252)
461 PLN02178 cinnamyl-alcohol dehy 77.1 7.2 0.00016 39.8 7.1 35 250-284 177-211 (375)
462 PRK05565 fabG 3-ketoacyl-(acyl 77.0 5.2 0.00011 37.0 5.6 36 249-284 2-38 (247)
463 cd08231 MDR_TM0436_like Hypoth 76.9 7.4 0.00016 38.8 7.0 41 243-283 169-210 (361)
464 PRK08220 2,3-dihydroxybenzoate 76.8 5 0.00011 37.5 5.4 35 248-282 4-39 (252)
465 PRK07063 short chain dehydroge 76.7 4.6 0.0001 38.1 5.2 35 249-284 4-39 (260)
466 PLN00198 anthocyanidin reducta 76.7 4.2 9E-05 40.3 5.1 34 249-282 6-40 (338)
467 PRK12769 putative oxidoreducta 76.6 3.7 7.9E-05 45.3 5.1 34 250-284 325-358 (654)
468 PRK06129 3-hydroxyacyl-CoA deh 76.6 3.7 8E-05 40.8 4.7 32 253-285 3-34 (308)
469 smart00859 Semialdhyde_dh Semi 76.5 7.1 0.00015 33.1 5.9 32 254-285 1-34 (122)
470 PRK06914 short chain dehydroge 76.5 4.6 0.0001 38.6 5.2 32 251-282 2-34 (280)
471 PLN02657 3,8-divinyl protochlo 76.5 4.6 0.0001 41.6 5.5 37 246-282 54-91 (390)
472 KOG2741 Dimeric dihydrodiol de 76.4 11 0.00024 38.8 8.0 111 251-377 5-127 (351)
473 PRK10537 voltage-gated potassi 76.4 15 0.00033 38.3 9.4 109 252-381 240-359 (393)
474 PRK06182 short chain dehydroge 76.4 4.7 0.0001 38.5 5.2 31 251-281 2-33 (273)
475 TIGR02440 FadJ fatty oxidation 76.3 2.6 5.7E-05 47.1 3.9 32 253-285 305-337 (699)
476 PF01494 FAD_binding_3: FAD bi 76.3 4 8.7E-05 39.6 4.8 32 253-285 2-33 (356)
477 PLN03154 putative allyl alcoho 76.3 8.4 0.00018 38.7 7.2 35 250-284 157-192 (348)
478 PRK12827 short chain dehydroge 76.3 4.8 0.0001 37.3 5.1 34 249-282 3-37 (249)
479 PLN02253 xanthoxin dehydrogena 76.3 4.9 0.00011 38.5 5.4 33 249-281 15-48 (280)
480 PLN02166 dTDP-glucose 4,6-dehy 76.3 4.3 9.2E-05 42.7 5.3 37 246-282 114-151 (436)
481 PRK05447 1-deoxy-D-xylulose 5- 76.2 11 0.00023 39.5 8.0 44 253-306 2-49 (385)
482 PRK15182 Vi polysaccharide bio 76.1 25 0.00053 37.0 10.9 32 251-284 5-36 (425)
483 cd08295 double_bond_reductase_ 76.1 9.1 0.0002 37.8 7.3 35 250-284 150-185 (338)
484 PRK11891 aspartate carbamoyltr 76.1 1.1E+02 0.0024 32.5 15.6 130 143-279 123-272 (429)
485 PRK06114 short chain dehydroge 75.9 5.2 0.00011 37.8 5.3 36 249-285 5-41 (254)
486 PRK00066 ldh L-lactate dehydro 75.9 4.4 9.6E-05 40.8 5.1 35 251-285 5-40 (315)
487 PRK01368 murD UDP-N-acetylmura 75.8 3.6 7.9E-05 43.4 4.6 33 250-284 4-36 (454)
488 PRK05993 short chain dehydroge 75.7 4.8 0.0001 38.8 5.1 31 251-281 3-34 (277)
489 PRK10309 galactitol-1-phosphat 75.6 9.7 0.00021 37.8 7.5 35 250-284 159-193 (347)
490 PRK08017 oxidoreductase; Provi 75.6 4.6 0.0001 37.8 4.9 30 253-282 3-33 (256)
491 PRK12859 3-ketoacyl-(acyl-carr 75.6 4.7 0.0001 38.3 5.0 33 249-281 3-38 (256)
492 PRK12921 2-dehydropantoate 2-r 75.6 3.9 8.4E-05 40.0 4.5 29 253-281 1-29 (305)
493 PRK09242 tropinone reductase; 75.5 5.2 0.00011 37.7 5.2 33 249-281 6-39 (257)
494 PRK07097 gluconate 5-dehydroge 75.5 5.3 0.00011 38.0 5.3 36 248-284 6-42 (265)
495 CHL00194 ycf39 Ycf39; Provisio 75.4 4.4 9.5E-05 40.0 4.9 31 253-283 1-32 (317)
496 PRK08229 2-dehydropantoate 2-r 75.3 3.9 8.4E-05 40.8 4.5 29 253-281 3-31 (341)
497 PRK02705 murD UDP-N-acetylmura 75.3 4.2 9E-05 42.4 4.9 31 254-285 2-32 (459)
498 PRK08594 enoyl-(acyl carrier p 75.1 5 0.00011 38.4 5.0 35 249-284 4-41 (257)
499 PRK03806 murD UDP-N-acetylmura 75.1 4.9 0.00011 41.8 5.3 35 250-285 4-38 (438)
500 PRK05854 short chain dehydroge 75.0 5.2 0.00011 39.6 5.3 33 249-281 11-44 (313)
No 1
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=1.3e-120 Score=929.61 Aligned_cols=358 Identities=82% Similarity=1.300 Sum_probs=353.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCChHHHhhcCCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCceeecCCCHHHH
Q 015361 47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEV 126 (408)
Q Consensus 47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~ip~~~d~G~~~~f~G~rvqh~~a~GP~kGGiR~~p~vt~~Ev 126 (408)
+++|++++++|++|+++++++|+++++|++|+|+++|+|||+||||++++|+|||||||+++||+|||+||||++|++|+
T Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev 80 (410)
T PLN02477 1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV 80 (410)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHhhhh
Q 015361 127 NALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF 206 (408)
Q Consensus 127 ~~LA~~mt~K~Al~~lP~GGaKGGI~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y~~~ 206 (408)
++||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.+++||++|||||||||++++|+||+|+|+++
T Consensus 81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~ 160 (410)
T PLN02477 81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF 160 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceeeCcccCCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCC
Q 015361 207 HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286 (408)
Q Consensus 207 ~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 286 (408)
.|++|+++||||+.+|||.+|+++|||||+++++++++++|.+++|+||+||||||||+++|++|.++|+|||||||++|
T Consensus 161 ~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G 240 (410)
T PLN02477 161 HGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITG 240 (410)
T ss_pred hCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHH
Q 015361 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEAD 366 (408)
Q Consensus 287 ~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~ 366 (408)
++|||+|||+++|++++++++++.+|++++.++++++|..+||||+|||++++||++||++++||+|+||||+|+||||+
T Consensus 241 ~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I~egAN~p~t~ea~ 320 (410)
T PLN02477 241 AVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAANHPTDPEAD 320 (410)
T ss_pred eEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCCHhHHHHcCCcEEEeCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEcchhcccccchhhHHHHHhccccceeE
Q 015361 367 EILSKRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVI 404 (408)
Q Consensus 367 ~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~ 404 (408)
++|++|||+|+||+++|||||++|||||+||++++.|.
T Consensus 321 ~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~ 358 (410)
T PLN02477 321 EILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWE 358 (410)
T ss_pred HHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCC
Confidence 99999999999999999999999999999999998774
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-120 Score=915.61 Aligned_cols=357 Identities=50% Similarity=0.839 Sum_probs=351.1
Q ss_pred CHHHHHHHHHHHHHHHcCCChHHHhhcCCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCceeecCCCHHHHH
Q 015361 48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN 127 (408)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~ip~~~d~G~~~~f~G~rvqh~~a~GP~kGGiR~~p~vt~~Ev~ 127 (408)
++|+++++++++|++.++++++++++|++|+|.++|++||+||+|++++|+|||||||+++||||||+||||+||++|++
T Consensus 2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~ 81 (411)
T COG0334 2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK 81 (411)
T ss_pred cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHhhhhh
Q 015361 128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFH 207 (408)
Q Consensus 128 ~LA~~mt~K~Al~~lP~GGaKGGI~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y~~~~ 207 (408)
+||+||||||||++||||||||||++||+.+|+.|+|||||+|+++|.+++||++||||||+||++++|+||+|+|+++.
T Consensus 82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~ 161 (411)
T COG0334 82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV 161 (411)
T ss_pred HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCceeeCcccCCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCC
Q 015361 208 GH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286 (408)
Q Consensus 208 g~-~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 286 (408)
|. .+|++||||+++|||.+|++||||||+++++++++.+|.+++|+||+||||||||+++|++|++.|+|||++||++|
T Consensus 162 g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 162 GNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 76 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHH
Q 015361 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEAD 366 (408)
Q Consensus 287 ~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~ 366 (408)
+||||+|||+++|.+.+++.+++.+|.+++.++++++|.++||||+|||++|+||.+||++++||+|+||||+|+|+||+
T Consensus 242 ~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V~EgAN~P~t~eA~ 321 (411)
T COG0334 242 GIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPTTPEAD 321 (411)
T ss_pred ceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccchhhHHHhhhcEEEeccCCCCCHHHH
Confidence 99999999999999888788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEcchhcccccchhhHHHHHhccccceeE
Q 015361 367 EILSKRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVI 404 (408)
Q Consensus 367 ~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~ 404 (408)
++|.+|||+|+||+++|||||++|||||+||++++.|.
T Consensus 322 ~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt 359 (411)
T COG0334 322 EILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWT 359 (411)
T ss_pred HHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccC
Confidence 99999999999999999999999999999999999885
No 3
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-119 Score=923.56 Aligned_cols=360 Identities=29% Similarity=0.454 Sum_probs=352.6
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCChH-----HHhhcCCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCceeec
Q 015361 45 IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP 119 (408)
Q Consensus 45 ~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~ip~~~d~G~~~~f~G~rvqh~~a~GP~kGGiR~~p 119 (408)
.+.+||++++.++++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||
T Consensus 16 ~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~~p 95 (445)
T PRK14030 16 GESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHP 95 (445)
T ss_pred CChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEecC
Confidence 6779999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHH
Q 015361 120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI 199 (408)
Q Consensus 120 ~vt~~Ev~~LA~~mt~K~Al~~lP~GGaKGGI~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi 199 (408)
+++++|+++||+||||||||++||||||||||.|||+.+|+.|+||+||+|+++|.++|||++|||||||||++++|+||
T Consensus 96 ~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~ 175 (445)
T PRK14030 96 SVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYM 175 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCCCceeeCcccCCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEE
Q 015361 200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (408)
Q Consensus 200 ~d~y~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVV 279 (408)
+|+|+++.++.++++||||+.+|||.+|++||||||++++++++++.|.+++|+||+||||||||+++|++|.+.|+|||
T Consensus 176 ~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvV 255 (445)
T PRK14030 176 FGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVV 255 (445)
T ss_pred HHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCeEeCCCCCCHHH---HHHhHhhcCCcc-----cCCCCeecCCCCcccccccEEeeccCCCcccccccccc---
Q 015361 280 AVSDITGAVKNADGIDIHK---LLAHKDKTGSLK-----DFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV--- 348 (408)
Q Consensus 280 aVsD~~G~iydp~GLDi~~---L~~~~~~~g~l~-----~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i--- 348 (408)
+|||++|+||||+|||+++ |++++++++++. .||+++.++++++|+++||||+|||++|+||.+||+++
T Consensus 256 avSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~ 335 (445)
T PRK14030 256 TISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNELNGEDADKLIKN 335 (445)
T ss_pred EEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccCCHHHHHHHHHc
Confidence 9999999999999999888 888998888775 78888889999999999999999999999999999999
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhccccceeE
Q 015361 349 KAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVI 404 (408)
Q Consensus 349 ~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~ 404 (408)
+||+|+||||+|+||||+++|++|||+|+||+++|||||++|||||+||++++.|.
T Consensus 336 ~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~ 391 (445)
T PRK14030 336 GVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWS 391 (445)
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcC
Confidence 99999999999999999999999999999999999999999999999999999986
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-115 Score=896.28 Aligned_cols=360 Identities=32% Similarity=0.528 Sum_probs=351.7
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCChH-----HHhhcCCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCceeec
Q 015361 45 IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP 119 (408)
Q Consensus 45 ~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~ip~~~d~G~~~~f~G~rvqh~~a~GP~kGGiR~~p 119 (408)
.+.+||++++.+|++|+++++++|+ ++++|++|+|+++|++||+||||++++|+|||||||+++||+|||+||||
T Consensus 20 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~p 99 (445)
T PRK09414 20 GQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHP 99 (445)
T ss_pred CCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeecC
Confidence 6779999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHH
Q 015361 120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI 199 (408)
Q Consensus 120 ~vt~~Ev~~LA~~mt~K~Al~~lP~GGaKGGI~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi 199 (408)
+++++|+++||+||||||||++||||||||||.+||+++|+.|+|||+|+|+++|.+++||+.|||||||||++++|+||
T Consensus 100 ~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~ 179 (445)
T PRK09414 100 SVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYL 179 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCCCceeeCcccCCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEE
Q 015361 200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (408)
Q Consensus 200 ~d~y~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVV 279 (408)
+|+|+++.++..|++||||+.+|||.+|.++|||||++++++++++.+.+++|+||+||||||||+++|++|.+.|+|||
T Consensus 180 ~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVV 259 (445)
T PRK09414 180 FGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVV 259 (445)
T ss_pred HHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 99999999987799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCeEeCCCCCCHHHHHHhHhhc-CCcccCC---CCeecCCCCcccccccEEeeccCCCcccccccccc---ccEE
Q 015361 280 AVSDITGAVKNADGIDIHKLLAHKDKT-GSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAKF 352 (408)
Q Consensus 280 aVsD~~G~iydp~GLDi~~L~~~~~~~-g~l~~~~---~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i---~aki 352 (408)
+|||++|++|||+|||+++|+++++++ +++.+|+ +++.++++++|..+||||+|||++|+||++||.++ +||+
T Consensus 260 avsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~aki 339 (445)
T PRK09414 260 TCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNELDEEDAKTLIANGVKA 339 (445)
T ss_pred EEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeE
Confidence 999999999999999999999999887 5788887 55678999999999999999999999999999999 9999
Q ss_pred EEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhccccceeE
Q 015361 353 IIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVI 404 (408)
Q Consensus 353 IvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~ 404 (408)
|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||.++..|.
T Consensus 340 IvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~ 391 (445)
T PRK09414 340 VAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWT 391 (445)
T ss_pred EEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceec
Confidence 9999999999999999999999999999999999999999999999999885
No 5
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-113 Score=878.15 Aligned_cols=359 Identities=30% Similarity=0.489 Sum_probs=336.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCCh---HHHhhcCCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCceeecCCCH
Q 015361 47 MNALAATSRNFRNAARILGLDS---KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDP 123 (408)
Q Consensus 47 ~~~~~~~~~~~~~a~~~~~~~~---~~~~~l~~p~r~~~~~ip~~~d~G~~~~f~G~rvqh~~a~GP~kGGiR~~p~vt~ 123 (408)
..|.|.+...++....++.-+| .++++|++|+|+++|++||+||||++++|+|||||||+++||+|||+||||++|+
T Consensus 29 ~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~v~~ 108 (454)
T PTZ00079 29 PEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVNL 108 (454)
T ss_pred hHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCCCCH
Confidence 3455555555555555554444 4678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHh
Q 015361 124 DEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEY 203 (408)
Q Consensus 124 ~Ev~~LA~~mt~K~Al~~lP~GGaKGGI~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y 203 (408)
+|+++||+||||||||++||+|||||||++||+.+|+.|++|+||+|+++|.++|||++||||||+||++++|+||+|+|
T Consensus 109 ~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y 188 (454)
T PTZ00079 109 SILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQY 188 (454)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCceeeCcccCCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeec
Q 015361 204 SKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 204 ~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD 283 (408)
+++.+.++|++||||+.+|||.+|++||||||+++++++++.++.+++|+||+||||||||+++|++|.+.|+|||+|||
T Consensus 189 ~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 189 KKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred HHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeCCCCCCHHHH---HHhHhhc-CCcccCC----CCeecCCCCcccccccEEeeccCCCcccccccccc---ccEE
Q 015361 284 ITGAVKNADGIDIHKL---LAHKDKT-GSLKDFD----GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAKF 352 (408)
Q Consensus 284 ~~G~iydp~GLDi~~L---~~~~~~~-g~l~~~~----~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i---~aki 352 (408)
++|+||||+|||+++| +++++.+ +++..|+ +++.++++++|..+||||+|||++|+||.+||+++ +||+
T Consensus 269 ~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 269 SDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred CCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 9999999999999888 6676654 6777775 57788999999999999999999999999999987 9999
Q ss_pred EEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhccccceeEe
Q 015361 353 IIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVIF 405 (408)
Q Consensus 353 IvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~~ 405 (408)
|+||||+|+|+||+++|++|||+|+||+++|||||++|||||+||++++.|.+
T Consensus 349 V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~ 401 (454)
T PTZ00079 349 VAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTA 401 (454)
T ss_pred EEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCH
Confidence 99999999999999999999999999999999999999999999999999964
No 6
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=8.5e-112 Score=869.61 Aligned_cols=361 Identities=31% Similarity=0.485 Sum_probs=345.7
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCChHH-----HhhcCCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCceeec
Q 015361 45 IVMNALAATSRNFRNAARILGLDSKL-----ERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP 119 (408)
Q Consensus 45 ~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~l~~p~r~~~~~ip~~~d~G~~~~f~G~rvqh~~a~GP~kGGiR~~p 119 (408)
.+..|+|.++..+.....+++-+|++ +++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||
T Consensus 16 ~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p 95 (444)
T PRK14031 16 NEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHA 95 (444)
T ss_pred CChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecC
Confidence 56688999999999888888888776 5599999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHH
Q 015361 120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI 199 (408)
Q Consensus 120 ~vt~~Ev~~LA~~mt~K~Al~~lP~GGaKGGI~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi 199 (408)
+++++|+++||+||||||||++||||||||||.+||+++|+.|+||+||+|+++|.++|||+.|||||||||++++|+||
T Consensus 96 ~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i 175 (444)
T PRK14031 96 SVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFM 175 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCCCceeeCcccCCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEE
Q 015361 200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (408)
Q Consensus 200 ~d~y~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVV 279 (408)
+|+|+++.++.+|++||||+.+|||.+|+++|||||+++++++++++|.+++|+||+||||||||+++|++|.+.|+|||
T Consensus 176 ~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVV 255 (444)
T PRK14031 176 FGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVV 255 (444)
T ss_pred HHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCeEeCCCCCCHHHHH---HhHhh-cCCcccCC---CCeecCCCCcccccccEEeeccCCCccccccccccccE-
Q 015361 280 AVSDITGAVKNADGIDIHKLL---AHKDK-TGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAK- 351 (408)
Q Consensus 280 aVsD~~G~iydp~GLDi~~L~---~~~~~-~g~l~~~~---~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~ak- 351 (408)
+|||++|++|||+|||+++|. +++.+ ++++.+|+ +++.++++++|+.+||||+|||++|+||.+||++++|+
T Consensus 256 aVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g 335 (444)
T PRK14031 256 TMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNGDDARQLVANG 335 (444)
T ss_pred EEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccccccCHHHHHHHHhcC
Confidence 999999999999999999986 55555 56787776 56778999999999999999999999999999999886
Q ss_pred --EEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhccccceeEe
Q 015361 352 --FIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVIF 405 (408)
Q Consensus 352 --iIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~~ 405 (408)
+|+||||+|+||+|+++|++|||.++||+++|||||++|||||+||++++.|.+
T Consensus 336 ~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~ 391 (444)
T PRK14031 336 VIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSS 391 (444)
T ss_pred CeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCH
Confidence 999999999999999999999999999999999999999999999999999863
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-103 Score=797.41 Aligned_cols=332 Identities=56% Similarity=0.897 Sum_probs=321.3
Q ss_pred HHHhhcCCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCCCCce
Q 015361 69 KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAK 148 (408)
Q Consensus 69 ~~~~~l~~p~r~~~~~ip~~~d~G~~~~f~G~rvqh~~a~GP~kGGiR~~p~vt~~Ev~~LA~~mt~K~Al~~lP~GGaK 148 (408)
.++.+|..|+|+++|++||.+|+|+.+|++||||||+.+|||+||||||||+|++||+++||+.||||||++|+|+||||
T Consensus 66 ~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaK 145 (514)
T KOG2250|consen 66 AILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAK 145 (514)
T ss_pred hhhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHhhhhhCCCCceeeCcccCCCCCCCCC
Q 015361 149 GGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE 228 (408)
Q Consensus 149 GGI~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y~~~~g~~~~~~tGkp~~~GGs~gr~ 228 (408)
|||.+||+.+|..|+||+||+|+++|.++|||++|+|+|||||+++||.|++|+|++..|++++++||||+.+|||.+|.
T Consensus 146 GGi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~ 225 (514)
T KOG2250|consen 146 GGILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRY 225 (514)
T ss_pred CccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhC--CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhc
Q 015361 229 AATGRGVVYATEALLAEHG--QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g--~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~ 306 (408)
+||||||+++++.++++++ .+++|+||+||||||||++++++|++.|+|+|+|+|++|++|||+|||+++|.++++++
T Consensus 226 ~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 226 EATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEK 305 (514)
T ss_pred cccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999888 66999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCeecCCC-------CcccccccEEeeccCCCccccccccccccE---EEEecCCCCCCHHHHHHHHhCCCeE
Q 015361 307 GSLKDFDGGDSMEPS-------ELLAHECDVLIPCALGGVLKRENAADVKAK---FIIEAANHPTDPEADEILSKRGVTI 376 (408)
Q Consensus 307 g~l~~~~~~~~i~~~-------ell~~~~DIliPaA~~~~I~~~na~~i~ak---iIvEgAN~p~T~eA~~iL~~rGI~v 376 (408)
+++.+|++++...+. .+|..+||||+|||.+|+||.+||.++.++ +|+||||+|+||||+++|+++||++
T Consensus 306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i 385 (514)
T KOG2250|consen 306 KTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLI 385 (514)
T ss_pred ccccccccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEE
Confidence 999999987754443 677889999999999999999999998665 9999999999999999999999999
Q ss_pred EcchhcccccchhhHHHHHhcccc
Q 015361 377 LPDIYANSGGVTVSYFEWVQVKKL 400 (408)
Q Consensus 377 vPD~laNaGGVivSy~Ew~qn~~~ 400 (408)
+||+.||+|||+||||||+||++.
T Consensus 386 ~Pd~~aNaGGVtvS~~E~l~nl~~ 409 (514)
T KOG2250|consen 386 IPDIYANAGGVTVSYFEWLQNLNH 409 (514)
T ss_pred echhhccCCCeeeeHHHHHHhccc
Confidence 999999999999999999999993
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=1.4e-81 Score=686.46 Aligned_cols=354 Identities=24% Similarity=0.302 Sum_probs=325.0
Q ss_pred ccC-CCCcchhhHHHHHHhh-ccCCHHHHHHHHHHHHHHHcCCChHHHhhcCCCCeEEEEEEEEEcCCCcEEEEEEEEEE
Q 015361 26 KSP-ISGFSSLLTCFESFRI-IVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQ 103 (408)
Q Consensus 26 ~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~ip~~~d~G~~~~f~G~rvq 103 (408)
.+. .++.++|++|...+.+ -++|||... +.|. -|+++|++++.|+.|+|.+.+.+|+ | +.|+|||+|
T Consensus 424 ~v~~~~~~~Ilr~~~~~~~~~lrTNff~~~----k~al-sFrldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR 492 (1002)
T PTZ00324 424 DIRNELDRTIFSAFLSFNEHILKTNFYKTE----KTAL-AFRLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIR 492 (1002)
T ss_pred hcCChhHHHHHHHHHHHHHHHhccccccCC----CceE-EEeCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEe
Confidence 344 7788899999988877 577898753 2333 3899999999999999999999999 4 999999999
Q ss_pred eeccCCCCCCCceeecC-----------CCHHHHHHHHHHHHHHHhhcCCCCCCceeEEeCCCCCCCH---HHHHHHHHH
Q 015361 104 HDNARGPMKGGIRYHPE-----------VDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSN---SELERLTRV 169 (408)
Q Consensus 104 h~~a~GP~kGGiR~~p~-----------vt~~Ev~~LA~~mt~K~Al~~lP~GGaKGGI~~dP~~~s~---~Eler~~r~ 169 (408)
|+.+ +||||||||+ +++|||++||+||||||| +||+|||||||.+||+.+++ .|+|+++|+
T Consensus 493 ~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tqt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~ 567 (1002)
T PTZ00324 493 FTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQ 567 (1002)
T ss_pred cCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHHHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHH
Confidence 9887 8899999998 889999999999999997 99999999999999999887 889999999
Q ss_pred HHHHHhhccCCCCcc-----------CCCCCCCChhHHHHHHHHhhhhhCCC--CceeeCcccCCCCCCCCC-ChhHHHH
Q 015361 170 FTQKIHDLIGIHTDI-----------PAPDMGTNAQTMAWILDEYSKFHGHS--PAVVTGKPIDLGGSLGRE-AATGRGV 235 (408)
Q Consensus 170 f~~~l~~~iG~~~di-----------papDvgt~~~~m~wi~d~y~~~~g~~--~~~~tGkp~~~GGs~gr~-~aTg~Gv 235 (408)
|+++|.+++||..|| ||||+||+++.|+|| ++|++.+|++ ++++||||+.+||+.|+. ++||+||
T Consensus 568 yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdwa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv 646 (1002)
T PTZ00324 568 YIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDWA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSV 646 (1002)
T ss_pred HHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHHH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhH
Confidence 999999999999999 999999999999999 8999999985 899999999999999999 8999999
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEc--cChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCC
Q 015361 236 VYATEALLAEHGQAIRDLTFVIQG--FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD 313 (408)
Q Consensus 236 ~~~~~~~l~~~g~~l~g~rvaIqG--fGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~ 313 (408)
+++++++++++|+++++.||++|| |||||++.++++. +|+|||+|++|++|||+|||+++|.+++++++++.+|+
T Consensus 647 ~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd 723 (1002)
T PTZ00324 647 RAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFD 723 (1002)
T ss_pred HHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCc
Confidence 999999999999999999999999 9999999999864 79999999999999999999999999999999998663
Q ss_pred ---------------------CCeec-----CCCCc---ccccccEEeeccC-CCccccccc--------cccccEEEEe
Q 015361 314 ---------------------GGDSM-----EPSEL---LAHECDVLIPCAL-GGVLKRENA--------ADVKAKFIIE 355 (408)
Q Consensus 314 ---------------------~~~~i-----~~~el---l~~~~DIliPaA~-~~~I~~~na--------~~i~akiIvE 355 (408)
+++.+ ..+++ +..+||||+|||. +++||++|+ .+++||+|||
T Consensus 724 ~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvE 803 (1002)
T PTZ00324 724 ESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVE 803 (1002)
T ss_pred hhhccCCCceeecccccccCCccceeccccccchhhccccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEE
Confidence 22222 22334 4789999999998 999999999 7899999999
Q ss_pred cCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhccc
Q 015361 356 AANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKK 399 (408)
Q Consensus 356 gAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~ 399 (408)
|||+|+||+|+.+|++|||.|+||+++|+|||++|||||+||++
T Consensus 804 GANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~Evl~~l~ 847 (1002)
T PTZ00324 804 GANLFITQDARLALEECGVILFKDASANKGGVTSSSLEVLAALA 847 (1002)
T ss_pred CCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHHHHHhccc
Confidence 99999999999999999999999999999999999999999998
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=2.6e-60 Score=458.55 Aligned_cols=190 Identities=34% Similarity=0.509 Sum_probs=180.6
Q ss_pred eCcccCCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCC
Q 015361 215 TGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGI 294 (408)
Q Consensus 215 tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GL 294 (408)
||||+.+|||.||+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|++|||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHH---HHhHhhcCC-cccCC----CCeecCCCCcccccccEEeeccCCCcccccccccc---ccEEEEecCCCCCCH
Q 015361 295 DIHKL---LAHKDKTGS-LKDFD----GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAKFIIEAANHPTDP 363 (408)
Q Consensus 295 Di~~L---~~~~~~~g~-l~~~~----~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i---~akiIvEgAN~p~T~ 363 (408)
|+++| .++++++++ +..|+ +++.++++++|..+||||+|||++|+||.+||+++ +||+|+||||+|+||
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~ 160 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA 160 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence 99988 556666665 45553 57889999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhCCCeEEcchhcccccchhhHHHHHhccccceeE
Q 015361 364 EADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVI 404 (408)
Q Consensus 364 eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~ 404 (408)
+|+++|++|||+|+||+++|+|||++|||||+||++++.|.
T Consensus 161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~ 201 (254)
T cd05313 161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWT 201 (254)
T ss_pred HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCC
Confidence 99999999999999999999999999999999999999886
No 10
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=5.1e-53 Score=402.83 Aligned_cols=183 Identities=55% Similarity=0.860 Sum_probs=178.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHH
Q 015361 222 GGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA 301 (408)
Q Consensus 222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~ 301 (408)
|||.+|.++|||||++++++++++++.+++++||+||||||||++++++|.++|++||+|+|++|++|||+|||+++|++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 79999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCcccCCCCeecCCCCcccccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchh
Q 015361 302 HKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY 381 (408)
Q Consensus 302 ~~~~~g~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~l 381 (408)
++++++++.+|++++.+++++++..+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||++
T Consensus 81 ~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~~ 160 (227)
T cd01076 81 YKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDIL 160 (227)
T ss_pred HHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHhccccceeE
Q 015361 382 ANSGGVTVSYFEWVQVKKLMTVI 404 (408)
Q Consensus 382 aNaGGVivSy~Ew~qn~~~~~~~ 404 (408)
+|+|||++||+||.||+++..|.
T Consensus 161 aNaGGvi~s~~E~~~~~~~~~~~ 183 (227)
T cd01076 161 ANAGGVTVSYFEWVQNLQGFYWD 183 (227)
T ss_pred hcCcchhhhHHHHhhhhccCcCC
Confidence 99999999999999999988764
No 11
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=1.6e-53 Score=410.36 Aligned_cols=183 Identities=51% Similarity=0.854 Sum_probs=172.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhCCC-CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHH
Q 015361 222 GGSLGREAATGRGVVYATEALLAEHGQA-IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLL 300 (408)
Q Consensus 222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~-l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~ 300 (408)
|||.+|.++|||||+++++++++.++.+ ++|+||+||||||||+++|++|.++|++||+|||++|++|||+|||+++|+
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 8999999999999999999999998876 999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcCC-cccCC-----CCeecCCC-CcccccccEEeeccCCCcccccccc-ccc--cEEEEecCCCCCCHHHHHHHH
Q 015361 301 AHKDKTGS-LKDFD-----GGDSMEPS-ELLAHECDVLIPCALGGVLKRENAA-DVK--AKFIIEAANHPTDPEADEILS 370 (408)
Q Consensus 301 ~~~~~~g~-l~~~~-----~~~~i~~~-ell~~~~DIliPaA~~~~I~~~na~-~i~--akiIvEgAN~p~T~eA~~iL~ 370 (408)
+++++.+. +..|+ +.+.++++ ++|+.+||||+|||++++||++|++ .++ ||+||||||+|+||+|+++|+
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L~ 160 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEILR 160 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHHH
T ss_pred HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHHH
Confidence 99999888 98887 56778774 9999999999999999999999999 999 999999999999999999999
Q ss_pred hCCCeEEcchhcccccchhhHHHHHhccccceeE
Q 015361 371 KRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVI 404 (408)
Q Consensus 371 ~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~ 404 (408)
+|||+|+||+++|+|||++||+||+||+++..|.
T Consensus 161 ~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~ 194 (244)
T PF00208_consen 161 ERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWT 194 (244)
T ss_dssp HTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTT
T ss_pred HCCCEEEcchhhcCCCeEeehhhhcchhhhhhhh
Confidence 9999999999999999999999999999987663
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=9e-51 Score=385.03 Aligned_cols=174 Identities=43% Similarity=0.646 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCc
Q 015361 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (408)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l 309 (408)
||||||++++++++++++.+++|+||+||||||||+++|++|.++|+++|+|+|++|++||| |||++++++++++.+++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999 99999999999988888
Q ss_pred ccCCCCeecCCCCcccccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchh
Q 015361 310 KDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTV 389 (408)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGViv 389 (408)
..|+..+.++++++|..+||||+|||++|+||++|+.+++||+|+||||+|+|++++++|++|||+|+||+++|+|||++
T Consensus 80 ~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi~ 159 (217)
T cd05211 80 ARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIV 159 (217)
T ss_pred cccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeEe
Confidence 88887777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccccceeE
Q 015361 390 SYFEWVQVKKLMTVI 404 (408)
Q Consensus 390 Sy~Ew~qn~~~~~~~ 404 (408)
|||||+||.+++.|.
T Consensus 160 s~~E~~q~~~~~~w~ 174 (217)
T cd05211 160 SYFEWVQNLQRLSWD 174 (217)
T ss_pred EHHHhcCCccccCCC
Confidence 999999999998875
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=4.4e-48 Score=339.97 Aligned_cols=130 Identities=53% Similarity=0.890 Sum_probs=124.7
Q ss_pred CCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEeCCCC
Q 015361 77 PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPK 156 (408)
Q Consensus 77 p~r~~~~~ip~~~d~G~~~~f~G~rvqh~~a~GP~kGGiR~~p~vt~~Ev~~LA~~mt~K~Al~~lP~GGaKGGI~~dP~ 156 (408)
|+|+++|++||+||||+.+.|+|||||||+++||+|||+||||++|.+|+++||++||||||++++|||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHhhhh
Q 015361 157 ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF 206 (408)
Q Consensus 157 ~~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y~~~ 206 (408)
++|..|+|+++|+|+++|.+++|+..|||||||||++++|+||+|+|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999999999999999999999999999999999875
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=3.5e-36 Score=281.79 Aligned_cols=153 Identities=31% Similarity=0.478 Sum_probs=138.6
Q ss_pred CChhHHHHHHHHHHHHHHh--CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhh
Q 015361 228 EAATGRGVVYATEALLAEH--GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK 305 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~--g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~ 305 (408)
+.+|||||+++++++++++ +.+++|++|+|||||+||+++|+.|.+.|++|+ ++|.+ .+++.++++.
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~~~~~~ 70 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVARAAEL 70 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHH
Confidence 4689999999999999986 788999999999999999999999999999999 77864 4555555543
Q ss_pred cCCcccCCCCeecCCCCcccccccEEeeccCCCccccccccccccEEEEecCCCCCC-HHHHHHHHhCCCeEEcchhccc
Q 015361 306 TGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD-PEADEILSKRGVTILPDIYANS 384 (408)
Q Consensus 306 ~g~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T-~eA~~iL~~rGI~vvPD~laNa 384 (408)
. +.+.+++++++..+|||++|||++++||.+|+++++|++|+||||+|+| ++++++|+++||+|+||+++|+
T Consensus 71 ~-------g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~Na 143 (200)
T cd01075 71 F-------GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNA 143 (200)
T ss_pred c-------CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeC
Confidence 1 3456677889989999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ccchhhHHHHHhcc
Q 015361 385 GGVTVSYFEWVQVK 398 (408)
Q Consensus 385 GGVivSy~Ew~qn~ 398 (408)
|||++||+||+|+.
T Consensus 144 GGv~~~~~e~~~~~ 157 (200)
T cd01075 144 GGLINVADELYGGN 157 (200)
T ss_pred cCceeehhHHhCCc
Confidence 99999999999975
No 15
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=100.00 E-value=4.2e-35 Score=334.55 Aligned_cols=363 Identities=23% Similarity=0.236 Sum_probs=283.7
Q ss_pred hHHHHHHHHHHhhhccC-CCCcchhhHHHHHHhh-ccCCHHHHHH-HHHHHHHHHcCCChHHHhhcCCCCeEEEEEEEEE
Q 015361 12 SQKLIHSFIHILLFKSP-ISGFSSLLTCFESFRI-IVMNALAATS-RNFRNAARILGLDSKLERSLLIPFREIKVECTIP 88 (408)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~ip~~ 88 (408)
..+.+...|...|.++. ++++++|++|...+.+ -++|||+... .+-+.+.. |+++|..++.+..|....++.|-
T Consensus 643 ~~~~~~~~i~~~l~~V~~l~~drILr~~~~~i~atlRTNff~~~~~g~~k~~ls-fKldp~~l~~~p~P~P~~eifV~-- 719 (1528)
T PF05088_consen 643 AQEELEEEIEEALDEVASLDEDRILRRFLNLIEATLRTNFFQPDEDGQPKPALS-FKLDPSFLPDLPEPRPYFEIFVY-- 719 (1528)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhcCcccccCccCCCCCeEE-EEEcHHHcCCCCCCCCcEEEEEE--
Confidence 45667788888888888 9999999999999987 6789998731 22223333 89999999999887766665432
Q ss_pred cCCCcEEEEEEEEEEe-eccCCCCCCCceeecC--CCHHHHHHHHHHHHHHHhhcCCCCCCceeEEeCCCCCC--CH---
Q 015361 89 KDDGSLVSYVGFRVQH-DNARGPMKGGIRYHPE--VDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKEL--SN--- 160 (408)
Q Consensus 89 ~d~G~~~~f~G~rvqh-~~a~GP~kGGiR~~p~--vt~~Ev~~LA~~mt~K~Al~~lP~GGaKGGI~~dP~~~--s~--- 160 (408)
..-|+|+|+++ ..|| |||||+.. .-..||..|+++|+.|| +.||-||||||++++.... +.
T Consensus 720 -----s~~~eGvHLR~g~VAR----GGlRwSdR~eDfRtEvlgL~kaQ~vKN--avIvp~GsKGgfv~k~~~~~~~r~~~ 788 (1528)
T PF05088_consen 720 -----SPRFEGVHLRFGDVAR----GGLRWSDRPEDFRTEVLGLVKAQQVKN--AVIVPVGSKGGFVVKQLPDPADRDAW 788 (1528)
T ss_pred -----CCceEEEEcccccccc----CcccccCCHHHHHHHHHHHHHHHHhcC--CcccCCCCceeEEecCCCCCCCHHHH
Confidence 24569999999 5777 99999743 23689999999999999 5567799999999865432 33
Q ss_pred -HHHHHHHHHHHHHHhhccC---------CC------Cc----cCCCCCCCChhHHHHHHHHhhhhhCCCCceeeCcccC
Q 015361 161 -SELERLTRVFTQKIHDLIG---------IH------TD----IPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPID 220 (408)
Q Consensus 161 -~Eler~~r~f~~~l~~~iG---------~~------~d----ipapDvgt~~~~m~wi~d~y~~~~g~~~~~~tGkp~~ 220 (408)
.|....++.|+++|.++.. |. .| |.|+|.||. .+.-++.+.+.- .|+|.|+.+.
T Consensus 789 ~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTA--tfSD~AN~ia~~----~gfWLgDAFA 862 (1528)
T PF05088_consen 789 QAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTA--TFSDIANEIAAE----YGFWLGDAFA 862 (1528)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcc--hHHHHHHHHHHH----cCCCcchhhh
Confidence 3445678899999988742 21 11 569999994 222222222222 4689999999
Q ss_pred CCCCCCCC----ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHH--HHHHHCCCEEEEeecCCCeEeCCCCC
Q 015361 221 LGGSLGRE----AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAA--RLIHERGGKVIAVSDITGAVKNADGI 294 (408)
Q Consensus 221 ~GGs~gr~----~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a--~~L~~~GakVVaVsD~~G~iydp~GL 294 (408)
+|||.|++ +.|++|+|.+++..++++|+|+....+.|+|.|+++..+. .+|..+..|.||..|+.....||+.
T Consensus 863 SGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P- 941 (1528)
T PF05088_consen 863 SGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP- 941 (1528)
T ss_pred cCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhcccceeEEEecCcceeecCcCC-
Confidence 99999998 6999999999999999999999999999999999988887 7888899999999999999999998
Q ss_pred CHH----HHHHhHhh-cCCcccCCC-------------Ce-----------------ecCCCC----cccccccEEeecc
Q 015361 295 DIH----KLLAHKDK-TGSLKDFDG-------------GD-----------------SMEPSE----LLAHECDVLIPCA 335 (408)
Q Consensus 295 Di~----~L~~~~~~-~g~l~~~~~-------------~~-----------------~i~~~e----ll~~~~DIliPaA 335 (408)
|++ +-+++++. +-+|.+|+. ++ .++++| +|..|+|+|+-..
T Consensus 942 D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGG 1021 (1528)
T PF05088_consen 942 DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGG 1021 (1528)
T ss_pred ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCC
Confidence 543 33444442 336777751 11 234444 5689999999999
Q ss_pred CCCccc---cc--------------cccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHH
Q 015361 336 LGGVLK---RE--------------NAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWV 395 (408)
Q Consensus 336 ~~~~I~---~~--------------na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~ 395 (408)
++..|- +. |+.+++||+|+||+|..+|+.++-.+..+|..+..|++.|+|||-+|.+|.-
T Consensus 1022 IGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEVN 1098 (1528)
T PF05088_consen 1022 IGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEVN 1098 (1528)
T ss_pred ccceEecCCCcccccccccCcceeechHHceEEEEecccccccchHHHHHHHHcCCccchhhhcccCCCcCccchhh
Confidence 887762 22 4566899999999999999999999999999999999999999999999973
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=324.41 Aligned_cols=356 Identities=22% Similarity=0.234 Sum_probs=264.7
Q ss_pred HHHH-HHHHHHhhhccCCCCcchhhHHHHHHhh-ccCCHHH-HHHHHHHHHHHHcCCChHHHhhcCCCC--eEEEEEEEE
Q 015361 13 QKLI-HSFIHILLFKSPISGFSSLLTCFESFRI-IVMNALA-ATSRNFRNAARILGLDSKLERSLLIPF--REIKVECTI 87 (408)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~p~--r~~~~~ip~ 87 (408)
++++ +++...|..-++++++|+|+++...+.+ -++|||+ .....-+.+.. |+++|..++-|.+|+ |+|.|.=|
T Consensus 706 ~~al~~~i~~al~~v~~ld~DrILR~~~~~i~atLRTNyfq~~~~~~~k~~lS-FK~dps~i~~lp~P~Py~eIFVyg~- 783 (1592)
T COG2902 706 AEALLDKIEEALDAVPSLDEDRILRRFVNLVKATLRTNYFQLDGHGTPKVALS-FKFDPSLIDELPYPRPYREIFVYGP- 783 (1592)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhceeeecCCCCcceeEE-EEeChhhcCCCCCCCcceEEEEEcC-
Confidence 3444 4444444444459999999999988877 5678887 12223333333 899999999888755 55555544
Q ss_pred EcCCCcEEEEEEEEEEe-eccCCCCCCCceeecCCC---HHHHHHHHHHHHHHHhhcCCCCCCceeEEeCCC--CCCCHH
Q 015361 88 PKDDGSLVSYVGFRVQH-DNARGPMKGGIRYHPEVD---PDEVNALAQLMTWKTAVADIPYGGAKGGIGCSP--KELSNS 161 (408)
Q Consensus 88 ~~d~G~~~~f~G~rvqh-~~a~GP~kGGiR~~p~vt---~~Ev~~LA~~mt~K~Al~~lP~GGaKGGI~~dP--~~~s~~ 161 (408)
-|+|+|.++ ..|| |||||+ +-. .+||..|++.|+.|||+ ||-+|||||+.+.+ ..-+..
T Consensus 784 --------~vEGvHLRFg~VAR----GGLRws-DR~~D~rtEvlgLvKAQqvKNav--IvpvGAKGgf~~k~lp~g~~RD 848 (1592)
T COG2902 784 --------EVEGVHLRFGPVAR----GGLRWS-DRNQDFRTEVLGLVKAQQVKNAV--IVPVGAKGGFLLKRLPTGGDRD 848 (1592)
T ss_pred --------cceEEEeecccccc----cccccc-ccchhHHHHHHHHHHHHHhcCCc--ccccCCcceEecccCCCCCchH
Confidence 459999999 4455 999998 443 67999999999999955 56689999999875 344544
Q ss_pred HH----HHHHHHHHHHHhhccCC---------------CCc----cCCCCCCCChhHHHHHHHHhhhhhCC---CCceee
Q 015361 162 EL----ERLTRVFTQKIHDLIGI---------------HTD----IPAPDMGTNAQTMAWILDEYSKFHGH---SPAVVT 215 (408)
Q Consensus 162 El----er~~r~f~~~l~~~iG~---------------~~d----ipapDvgt~~~~m~wi~d~y~~~~g~---~~~~~t 215 (408)
|+ .+.++.|++.|.+++.. +.| +.|||.||. +|+.+++. ..+++-
T Consensus 849 ~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTA---------tFsD~AN~vA~~~~fwl 919 (1592)
T COG2902 849 AIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTA---------TFSDIANSVAREYGFWL 919 (1592)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcc---------cHHHHHHHHHHHhCCCh
Confidence 43 45678888888766421 111 569999995 33333321 246889
Q ss_pred CcccCCCCCCCCC----ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc----ChHHHHHHHHHHHCCCEEEEeecCCCe
Q 015361 216 GKPIDLGGSLGRE----AATGRGVVYATEALLAEHGQAIRDLTFVIQGF----GNVGSWAARLIHERGGKVIAVSDITGA 287 (408)
Q Consensus 216 Gkp~~~GGs~gr~----~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~ 287 (408)
||.+.+|||.|++ ++|++|+|++++..++++|.+++...+.+.|. |+|+++ .+|..+-.+.||+.|.++.
T Consensus 920 ~DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgN--gMLLS~~irLiAAfDhrhI 997 (1592)
T COG2902 920 GDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGN--GMLLSKHIRLIAAFDHRHI 997 (1592)
T ss_pred hhhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCcccccc--ceeccccceeeEEecCCce
Confidence 9999999999987 69999999999999999999998888888886 555555 5666777889999999999
Q ss_pred EeCC-CCCCHHHHHH---hHhhcCCcccCCCC------------------------------eecCCCC----ccc----
Q 015361 288 VKNA-DGIDIHKLLA---HKDKTGSLKDFDGG------------------------------DSMEPSE----LLA---- 325 (408)
Q Consensus 288 iydp-~GLDi~~L~~---~~~~~g~l~~~~~~------------------------------~~i~~~e----ll~---- 325 (408)
++|| -++|...+.+ ....+.+|.+|+.. +.++|.| +|.
T Consensus 998 FiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvD 1077 (1592)
T COG2902 998 FIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVD 1077 (1592)
T ss_pred eeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccChHHHHHHHHcCchh
Confidence 9999 5787777666 44456778877511 0112222 233
Q ss_pred ----ccccEEeeccCC-Ccccccccc--------ccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHH
Q 015361 326 ----HECDVLIPCALG-GVLKRENAA--------DVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYF 392 (408)
Q Consensus 326 ----~~~DIliPaA~~-~~I~~~na~--------~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~ 392 (408)
-..|.+|||..+ |.++.+||. +++||+|+||||..+|+.++-.|.++|..+..|+++|+|||.||.+
T Consensus 1078 LLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~ 1157 (1592)
T COG2902 1078 LLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDH 1157 (1592)
T ss_pred hhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCCCcccch
Confidence 345667888874 455555554 5799999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 015361 393 EWVQ 396 (408)
Q Consensus 393 Ew~q 396 (408)
|..-
T Consensus 1158 EVni 1161 (1592)
T COG2902 1158 EVNI 1161 (1592)
T ss_pred hhhh
Confidence 9864
No 17
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.93 E-value=1.9e-26 Score=194.70 Aligned_cols=73 Identities=49% Similarity=0.739 Sum_probs=71.3
Q ss_pred ccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhcccc
Q 015361 328 CDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKL 400 (408)
Q Consensus 328 ~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~ 400 (408)
||||+|||++++||++|+++++||+|+||||+|+|++|+++|++|||+|+||+++|+|||++||+||.||+++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~ 75 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR 75 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998754
No 18
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.44 E-value=3e-13 Score=135.95 Aligned_cols=130 Identities=24% Similarity=0.356 Sum_probs=96.6
Q ss_pred CeEEEEccChHHHHHHHHHHH--------CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc
Q 015361 253 LTFVIQGFGNVGSWAARLIHE--------RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL 324 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~--------~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell 324 (408)
+||+|+||||||+.++++|.+ .+++||+|+|++|++|||+|||++++++++++ +.+..++ .+.++.++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~-~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID-YEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC-CCcCCHHHHh
Confidence 379999999999999999987 46899999999999999999999999998866 6665553 1223456677
Q ss_pred cccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhccccceeE
Q 015361 325 AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKLMTVI 404 (408)
Q Consensus 325 ~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~~~~~ 404 (408)
..++||+|+|+..+ .+.+ |.. +......++|+.|+ .+|+|.+...|-|..+-....++.
T Consensus 79 ~~~~DVvVE~t~~~-~~g~----------------~~~-~~~~~aL~~G~hVV---TaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 79 EIKPDVIVDVTPAS-KDGI----------------REK-NLYINAFEHGIDVV---TANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred cCCCCEEEECCCCC-CcCc----------------hHH-HHHHHHHHCCCEEE---cCCHHHHHhhHHHHHHHHHHcCCe
Confidence 78999999997542 1211 111 11233448999997 899999998887777655444444
Q ss_pred e
Q 015361 405 F 405 (408)
Q Consensus 405 ~ 405 (408)
|
T Consensus 138 ~ 138 (326)
T PRK06392 138 I 138 (326)
T ss_pred E
Confidence 4
No 19
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.39 E-value=7.9e-13 Score=133.35 Aligned_cols=121 Identities=24% Similarity=0.427 Sum_probs=90.4
Q ss_pred CeEEEEccChHHHHHHHHHHH--------CC--CEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCC---CeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHE--------RG--GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG---GDSME 319 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~--------~G--akVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~---~~~i~ 319 (408)
.+|+||||||||+.++++|.+ .| .+|++|+|++|++|||+|+|++++++++++++.+..|+. ...++
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 689999999999999999976 45 899999999999999999999999999999888877752 22345
Q ss_pred CCCcc-cccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhcc
Q 015361 320 PSELL-AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVK 398 (408)
Q Consensus 320 ~~ell-~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~ 398 (408)
.++++ ..++||+|.|. +.+++..+. ..+.++|+.|+ .+|+|.+...|-|..+-.
T Consensus 83 ~~ell~~~~~DVvVd~t-----~~~~a~~~~-----------------~~al~~G~~VV---tanK~~la~~~~el~~la 137 (336)
T PRK08374 83 PEEIVEEIDADIVVDVT-----NDKNAHEWH-----------------LEALKEGKSVV---TSNKPPIAFHYDELLDLA 137 (336)
T ss_pred HHHHHhcCCCCEEEECC-----CcHHHHHHH-----------------HHHHhhCCcEE---ECCHHHHHhCHHHHHHHH
Confidence 56777 57899999775 233444332 22335666664 567766665555555433
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.02 E-value=1.2e-09 Score=110.57 Aligned_cols=128 Identities=27% Similarity=0.470 Sum_probs=90.6
Q ss_pred CeEEEEccChHHHHHHHHHHHC----------CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCe-ecCCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-SMEPS 321 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~-~i~~~ 321 (408)
.+|+|+|+|+||+.+++.|.+. +++|++|+|+++.+|+++|+|++++.+..++.+.+..|++.. ..+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999999765 689999999999999999999999999888777666665322 12445
Q ss_pred Ccc-cccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhcccc
Q 015361 322 ELL-AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKL 400 (408)
Q Consensus 322 ell-~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~ 400 (408)
+++ ..++||++.|...+.-+.+.+. +......++|+.|+ .+|++.+..++-|+.+-.+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~-----------------~~~~~aL~~GkhVV---taNK~pla~~~~eL~~~A~~ 142 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPAL-----------------SHCRKALERGKHVV---TSNKGPLALAYKELKELAKK 142 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHH-----------------HHHHHHHHCCCEEE---cCCcHHHHhhHHHHHHHHHH
Confidence 666 4579999999664433222111 12122336777775 56777776666666654433
No 21
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.75 E-value=7.3e-08 Score=78.41 Aligned_cols=84 Identities=30% Similarity=0.412 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCc
Q 015361 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (408)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l 309 (408)
+||+|++..+++..+..+.++++++++|+|+|++|+.+++.|.+.+.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence 4899999999999998888999999999999999999999999986655667665
Q ss_pred ccCCCCeecCCCCcccccccEEeeccCCCccccc--cccccccEEEEecC
Q 015361 310 KDFDGGDSMEPSELLAHECDVLIPCALGGVLKRE--NAADVKAKFIIEAA 357 (408)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~--na~~i~akiIvEgA 357 (408)
|++|+|+..+.+..+ +....++.+|++.|
T Consensus 56 -------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 -------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred -------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 999999987766655 46656777777754
No 22
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.74 E-value=2.1e-08 Score=101.84 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=88.6
Q ss_pred CeEEEEccChHHHHHHHHHHHC----------CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSE 322 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~e 322 (408)
.+|+|.|||+||+.++++|.++ ..+|++|+|+++.+++++|+|++++++..+....+..|. ....++
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~---~~~~~~ 79 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI---EHHPEE 79 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhh---ccChHH
Confidence 5899999999999999998643 268999999999999999999988666433211111111 011223
Q ss_pred cc--cccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhcccc
Q 015361 323 LL--AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKL 400 (408)
Q Consensus 323 ll--~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~ 400 (408)
++ ..+.||+|.|...+..+.+-+. +..+.+.++|+.|| .+|++.+...+-|..+-.+.
T Consensus 80 ~~~~~~~~dVvVe~T~s~~~~~e~a~-----------------~~~~~aL~~G~hVV---TANK~~la~~~~eL~~lA~~ 139 (346)
T PRK06813 80 RATDNISGTVLVESTVTNLKDGNPGK-----------------QYIKQAIEKKMDIV---AISKGALVTNWREINEAAKI 139 (346)
T ss_pred HhcCCCCCCEEEECCCCccCCchHHH-----------------HHHHHHHHCCCeEE---cCCcHHHhccHHHHHHHHHH
Confidence 33 2368999998654433333111 12233458999997 89999999998888776555
Q ss_pred ceeEee
Q 015361 401 MTVIFL 406 (408)
Q Consensus 401 ~~~~~~ 406 (408)
.++.|+
T Consensus 140 ~g~~~~ 145 (346)
T PRK06813 140 ANVRIR 145 (346)
T ss_pred cCCeEE
Confidence 555544
No 23
>PLN02700 homoserine dehydrogenase family protein
Probab=98.59 E-value=1.2e-07 Score=97.16 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=79.7
Q ss_pred CCeEEEEccChHHHHHHHHHHHC-------C--CEEEEeecCCCeEeCCC----CCCHHHHHH---hHhhcCCcccCCCC
Q 015361 252 DLTFVIQGFGNVGSWAARLIHER-------G--GKVIAVSDITGAVKNAD----GIDIHKLLA---HKDKTGSLKDFDGG 315 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~-------G--akVVaVsD~~G~iydp~----GLDi~~L~~---~~~~~g~l~~~~~~ 315 (408)
-.+|+|.|+||||+.+++.|.++ | .+|++|+|+++.++|++ |||++.+.+ .+.+...+..|+..
T Consensus 3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~~ 82 (377)
T PLN02700 3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGAL 82 (377)
T ss_pred EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhhc
Confidence 35789999999999999887542 3 68999999999999965 999888766 33333334333110
Q ss_pred ----ee----------cCCCCcc-cccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcch
Q 015361 316 ----DS----------MEPSELL-AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDI 380 (408)
Q Consensus 316 ----~~----------i~~~ell-~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~ 380 (408)
.. ++..+.+ ..+.+ ++||..+...+.+....+.++|+.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------ViVD~T~s~~~~~~y~~aL~~G~hVV--- 137 (377)
T PLN02700 83 AGGCQVFNNSELSRKVIDIATLLGKSTGL----------------------VVVDCSASMETIGALNEAVDLGCCIV--- 137 (377)
T ss_pred cccccccccccccchhhhHHHHhhccCCC----------------------EEEECCCChHHHHHHHHHHHCCCeEE---
Confidence 00 0000111 22234 45555444333445556668999997
Q ss_pred hcccccchhhHHHHHhc
Q 015361 381 YANSGGVTVSYFEWVQV 397 (408)
Q Consensus 381 laNaGGVivSy~Ew~qn 397 (408)
.+|++.+..+|-||.+-
T Consensus 138 TaNK~~~a~~~~~~~~l 154 (377)
T PLN02700 138 LANKKPLTSTLEDYDKL 154 (377)
T ss_pred cCCchHhccCHHHHHHH
Confidence 89999999988777553
No 24
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.41 E-value=7.5e-07 Score=89.81 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=85.0
Q ss_pred CCCeEEEEccChHHHHHHHHHHHC----------CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP 320 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~ 320 (408)
+-.+|+|.|||+||+.++++|.++ ..+|++|+|+++..++ ++|...+ +.+...+... .+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~~ 71 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LGD 71 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------ccH
Confidence 346899999999999999999874 3799999999998774 4443333 3232222111 122
Q ss_pred CCcccccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchhhHHHHHhcccc
Q 015361 321 SELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQVKKL 400 (408)
Q Consensus 321 ~ell~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~qn~~~ 400 (408)
+.++..+.||++++...+.-+.+ | -+......++|++|+ .+|++.++..|.|..+....
T Consensus 72 ~~~~~~~~dvvve~~~~d~~~~~----------------~--~~~~~~al~~GkhVV---TaNK~~lA~~~~el~~~A~~ 130 (333)
T COG0460 72 EVLLDEDIDVVVELVGGDVEPAE----------------P--ADLYLKALENGKHVV---TANKALLALHYHELREAAEK 130 (333)
T ss_pred hhhccccCCEEEecCcccCCchh----------------h--HHHHHHHHHcCCeEE---CCCchHhHhhHHHHHHHHHH
Confidence 34557789999999665433332 1 122233458999997 89999999999999987665
Q ss_pred ceeEe
Q 015361 401 MTVIF 405 (408)
Q Consensus 401 ~~~~~ 405 (408)
.++.|
T Consensus 131 ~g~~l 135 (333)
T COG0460 131 NGVKL 135 (333)
T ss_pred hCCeE
Confidence 44433
No 25
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.32 E-value=1.7e-06 Score=96.87 Aligned_cols=129 Identities=17% Similarity=0.250 Sum_probs=84.4
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHC---------CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHER---------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM 318 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i 318 (408)
.+-+..+|+|.|||+||+.++++|.+. ..+|++|+|+++.+++|+|+|.+.+.+..+... ..++....+
T Consensus 461 ~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~ 538 (819)
T PRK09436 461 LSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAG--EPFDLDRLI 538 (819)
T ss_pred cccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhcc--CCCCHHHHH
Confidence 344678999999999999999998643 368999999999999999999987665444321 111100000
Q ss_pred CCCCcc---cccccEEeeccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccchh---hHH
Q 015361 319 EPSELL---AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTV---SYF 392 (408)
Q Consensus 319 ~~~ell---~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGViv---Sy~ 392 (408)
+++ ..+.||+|+|.-...+ .... ..+.++|+.|+ .+|++.+.. .|-
T Consensus 539 ---~~~~~~~~~~~vvvd~t~~~~~---------------------~~~~-~~al~~g~~VV---taNK~~~a~~~~~~~ 590 (819)
T PRK09436 539 ---RLVKEYHLLNPVIVDCTSSQAV---------------------ADQY-ADFLAAGFHVV---TPNKKANTSSYAYYH 590 (819)
T ss_pred ---HHHhhcCCCCCEEEECCCChHH---------------------HHHH-HHHHHcCCEEE---cCCchhccCCHHHHH
Confidence 111 2356788887533221 1123 34558999997 899999984 456
Q ss_pred HHHhccccceeEee
Q 015361 393 EWVQVKKLMTVIFL 406 (408)
Q Consensus 393 Ew~qn~~~~~~~~~ 406 (408)
|..+.....++.|+
T Consensus 591 el~~~a~~~~~~~~ 604 (819)
T PRK09436 591 QLREAARKSRRKFL 604 (819)
T ss_pred HHHHHHHHcCCeEE
Confidence 66655555555544
No 26
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.21 E-value=1.4e-06 Score=74.33 Aligned_cols=110 Identities=24% Similarity=0.340 Sum_probs=68.3
Q ss_pred ccChHHHHHHHHHHHC----CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccc-ccccEEee
Q 015361 259 GFGNVGSWAARLIHER----GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECDVLIP 333 (408)
Q Consensus 259 GfGnVG~~~a~~L~~~----GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~-~~~DIliP 333 (408)
|||+||+.+++.|.+. +.++++|+|++ .+.+++ ..... ... ....+.+++++ .++||+|+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~------~~~~~-~~~-------~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD------WAASF-PDE-------AFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT------HHHHH-THS-------CEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh------hhhhc-ccc-------cccCCHHHHhcCcCCCEEEE
Confidence 8999999999999876 79999999999 777665 11100 000 01122345554 57999999
Q ss_pred ccCCCccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccch--hhHHHHHhccccceeEeecC
Q 015361 334 CALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVT--VSYFEWVQVKKLMTVIFLIP 408 (408)
Q Consensus 334 aA~~~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGVi--vSy~Ew~qn~~~~~~~~~~~ 408 (408)
|+..+.+ +.-..++| ++|+.|+ .+|+|+.. ..|-|..+-....+..|+.|
T Consensus 66 ~t~~~~~---------------------~~~~~~~L-~~G~~VV---t~nk~ala~~~~~~~L~~~A~~~g~~~~~e 117 (117)
T PF03447_consen 66 CTSSEAV---------------------AEYYEKAL-ERGKHVV---TANKGALADEALYEELREAARKNGVRIYYE 117 (117)
T ss_dssp -SSCHHH---------------------HHHHHHHH-HTTCEEE---ES-HHHHHSHHHHHHHHHHHHHHT-EEEEG
T ss_pred CCCchHH---------------------HHHHHHHH-HCCCeEE---EECHHHhhhHHHHHHHHHHHHHcCCEEEeC
Confidence 9543221 12233444 8999997 79999998 77777777666666666654
No 27
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.04 E-value=1.4e-05 Score=89.44 Aligned_cols=56 Identities=32% Similarity=0.433 Sum_probs=47.3
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHC--------C--CEEEEeecCCCeEeCCCCCCHHHHHHhHh
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHER--------G--GKVIAVSDITGAVKNADGIDIHKLLAHKD 304 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~--------G--akVVaVsD~~G~iydp~GLDi~~L~~~~~ 304 (408)
+.+..+++|.|||+||+.++++|.++ | .+|++|+|+++.+++++|+|...+.+..+
T Consensus 455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~ 520 (810)
T PRK09466 455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD 520 (810)
T ss_pred cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH
Confidence 34567899999999999999998643 3 78999999999999999999887776544
No 28
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.88 E-value=0.00043 Score=61.00 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCe
Q 015361 237 YATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD 316 (408)
Q Consensus 237 ~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~ 316 (408)
++++.++++.+.+++++++.|.|.|++|+.+++.|.+.|...|.+.|.+ .+.+.+..++.+.- .. ...
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~----------~~~~~~~~~~~~~~-~~-~~~ 71 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT----------LEKAKALAERFGEL-GI-AIA 71 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHhhc-cc-cee
Confidence 3455566667778899999999999999999999998874444466654 23333333221110 00 001
Q ss_pred ecCCCCcccccccEEeeccCCCcccccccc----cc-ccEEEEecCCCCCCHHHHHHHHhCCCeEEcc
Q 015361 317 SMEPSELLAHECDVLIPCALGGVLKRENAA----DV-KAKFIIEAANHPTDPEADEILSKRGVTILPD 379 (408)
Q Consensus 317 ~i~~~ell~~~~DIliPaA~~~~I~~~na~----~i-~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD 379 (408)
..+..+. -.++|++|-|......+.++.. .+ .-++|++-+-.|...+..+.++++|+.++|.
T Consensus 72 ~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g 138 (155)
T cd01065 72 YLDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDG 138 (155)
T ss_pred ecchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence 1122222 3579999999866654112111 11 3467777766664337778899999988864
No 29
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.77 E-value=0.00015 Score=66.51 Aligned_cols=121 Identities=20% Similarity=0.332 Sum_probs=65.2
Q ss_pred HHHHHHHHH-HHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc
Q 015361 233 RGVVYATEA-LLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311 (408)
Q Consensus 233 ~Gv~~~~~~-~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~ 311 (408)
||.-+++-. +++..+..+.|++++|.|||+||+.+|+.|...|++|+ |+|.+ +-..++... .+
T Consensus 3 yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~D----------Pi~alqA~~-----dG 66 (162)
T PF00670_consen 3 YGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEID----------PIRALQAAM-----DG 66 (162)
T ss_dssp HHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-SS----------HHHHHHHHH-----TT
T ss_pred cccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEECC----------hHHHHHhhh-----cC
Confidence 344444433 33456788999999999999999999999999999997 88874 333333222 12
Q ss_pred CCCCeecCCCCcccccccEEeeccCC-Ccccccccccccc-EEEEecCCCCCCHHHHHHHHhCCC
Q 015361 312 FDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKA-KFIIEAANHPTDPEADEILSKRGV 374 (408)
Q Consensus 312 ~~~~~~i~~~ell~~~~DIliPaA~~-~~I~~~na~~i~a-kiIvEgAN~p~T~eA~~iL~~rGI 374 (408)
| +..+-++.+ ..+||+|-|... ++|+.+...+++= .+++...-.+..-+. +.|++.++
T Consensus 67 f---~v~~~~~a~-~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~-~~L~~~~~ 126 (162)
T PF00670_consen 67 F---EVMTLEEAL-RDADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDV-DALEANAV 126 (162)
T ss_dssp ----EEE-HHHHT-TT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTH-HHHHTCTS
T ss_pred c---EecCHHHHH-hhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCceeEee-ccccccCc
Confidence 3 222223433 378999987653 5678887777744 344444333322111 34555544
No 30
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.67 E-value=0.00043 Score=68.70 Aligned_cols=126 Identities=23% Similarity=0.312 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG 307 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g 307 (408)
...|+.+++. .+++..+.++.|++|+|.|+|.+|+.+|+.|...|++|+ +.|.+. +.+.+..+ .+
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~~----------~~~~~~~~-~g 194 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARSS----------ADLARITE-MG 194 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCCH----------HHHHHHHH-CC
Confidence 3466766653 445556778999999999999999999999999999877 666542 22222211 11
Q ss_pred CcccCCCCeecCCCCc--ccccccEEeeccCCCccccccccccc-cEEEEecCCCCC-CHHHHHHHHhCCCeEE
Q 015361 308 SLKDFDGGDSMEPSEL--LAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT-DPEADEILSKRGVTIL 377 (408)
Q Consensus 308 ~l~~~~~~~~i~~~el--l~~~~DIliPaA~~~~I~~~na~~i~-akiIvEgAN~p~-T~eA~~iL~~rGI~vv 377 (408)
.+.++.+++ +-.++|+++-|.....++.+....++ -.+|+.-|..|- |+- +..+++|+..+
T Consensus 195 -------~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 195 -------LIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred -------CeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 111211111 12379999998766667766655553 468999998884 443 67789998776
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.39 E-value=0.00097 Score=66.44 Aligned_cols=126 Identities=25% Similarity=0.312 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG 307 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g 307 (408)
..+|+.| ++.++++..+.++.+++|.|.|+|.+|+.++..|...|++|+ +.|.+ .+++.. .++.+
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~----------~~~~~~-~~~~G 195 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARK----------SAHLAR-ITEMG 195 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHH-HHHcC
Confidence 3466677 444566677788999999999999999999999999999776 56664 122222 11111
Q ss_pred CcccCCCCeecCCCCc--ccccccEEeeccCCCcccccccccc-ccEEEEecCCCCC-CHHHHHHHHhCCCeEE
Q 015361 308 SLKDFDGGDSMEPSEL--LAHECDVLIPCALGGVLKRENAADV-KAKFIIEAANHPT-DPEADEILSKRGVTIL 377 (408)
Q Consensus 308 ~l~~~~~~~~i~~~el--l~~~~DIliPaA~~~~I~~~na~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~vv 377 (408)
.+.+..+++ +-.++|++|-|.....++++-...+ +-.+|+.-|..|- |.- +..+++|+.++
T Consensus 196 -------~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~ 260 (296)
T PRK08306 196 -------LSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL 260 (296)
T ss_pred -------CeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence 112211111 1237999999876555666544444 2356777666662 321 34567888776
No 32
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.39 E-value=0.0018 Score=62.08 Aligned_cols=137 Identities=25% Similarity=0.292 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCE--EEEeecCCCeEeCCCCCCHHHH-HHhHhhcC
Q 015361 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGK--VIAVSDITGAVKNADGIDIHKL-LAHKDKTG 307 (408)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~Gak--VVaVsD~~G~iydp~GLDi~~L-~~~~~~~g 307 (408)
|+-=+..++..+++..|.+++++||+|.|.|.+|+.++..|.+.|++ -+.+.|++|-++....-++..- .++.+..+
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~ 83 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN 83 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhc
Confidence 34334455566777778889999999999999999999999999987 6679999987765543111111 22222211
Q ss_pred CcccCCCCeecCCCCcccccccEEeeccCCCcccccccccc-ccEEEEecCCCCC-CHHHHHHHHhCCCe
Q 015361 308 SLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV-KAKFIIEAANHPT-DPEADEILSKRGVT 375 (408)
Q Consensus 308 ~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~ 375 (408)
. . .. ..+-.+.+. ++|++|-|...+.++++..+.+ +-.+|..-. +|+ |+-.++ .++.|..
T Consensus 84 ~-~---~~-~~~l~~~l~-~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~~~-A~~~ga~ 145 (226)
T cd05311 84 P-E---KT-GGTLKEALK-GADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWPEE-AKEAGAD 145 (226)
T ss_pred c-C---cc-cCCHHHHHh-cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCHHH-HHHcCCc
Confidence 0 0 00 011112332 5899999998888887766655 345777766 564 332333 3345663
No 33
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.07 E-value=0.0021 Score=68.01 Aligned_cols=108 Identities=17% Similarity=0.282 Sum_probs=68.3
Q ss_pred HHHHHHHH-HHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcc
Q 015361 232 GRGVVYAT-EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (408)
Q Consensus 232 g~Gv~~~~-~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~ 310 (408)
.+|...++ ...++..+..+.|++|+|.|+|++|+.+|+.|...|++|+ +.|.+. ....+...
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~dp----------~~a~~A~~------ 295 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEIDP----------ICALQAAM------ 295 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhHHHHHh------
Confidence 34444433 4556666788999999999999999999999999999977 555431 11111111
Q ss_pred cCCCCeecCCCCcccccccEEeeccC-CCcccccccccccc-EEEEecCCC
Q 015361 311 DFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKA-KFIIEAANH 359 (408)
Q Consensus 311 ~~~~~~~i~~~ell~~~~DIliPaA~-~~~I~~~na~~i~a-kiIvEgAN~ 359 (408)
.+.+..+-++++ ..+||++.|+. .+.|+.+....++- -+++..+-+
T Consensus 296 --~G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 296 --EGYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --cCceeccHHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 022222334444 37899999863 35677776666644 355555544
No 34
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.05 E-value=0.0019 Score=59.41 Aligned_cols=117 Identities=24% Similarity=0.339 Sum_probs=69.6
Q ss_pred hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccc
Q 015361 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA 325 (408)
Q Consensus 246 ~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~ 325 (408)
.+.++.|+||.|.|+|++|+.+|+.|...|++|++. |.+. -+.+ .... .+.+..+-++++.
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~-------~~~~---~~~~--------~~~~~~~l~ell~ 90 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGY-DRSP-------KPEE---GADE--------FGVEYVSLDELLA 90 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEE-ESSC-------HHHH---HHHH--------TTEEESSHHHHHH
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEe-cccC-------Chhh---hccc--------ccceeeehhhhcc
Confidence 356799999999999999999999999999999954 4332 1111 0000 0111223344443
Q ss_pred ccccEEeeccC-----CCccccccccccc-cEEEEecCCCCC-CHHHH-HHHHhCCCe-EEcchhc
Q 015361 326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIYA 382 (408)
Q Consensus 326 ~~~DIliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-T~eA~-~iL~~rGI~-vvPD~la 382 (408)
.||+++-+.. .+.|+.+.-.+++ -.+++.-|-+.+ ..+|- +.|++.-+. ..=|+..
T Consensus 91 -~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 91 -QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp -H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred -hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 5899988764 3456666555654 458888999985 44443 566555454 4445443
No 35
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.02 E-value=0.0098 Score=54.74 Aligned_cols=96 Identities=22% Similarity=0.311 Sum_probs=63.9
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChH-HHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHh
Q 015361 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNV-GSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD 304 (408)
Q Consensus 226 gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnV-G~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~ 304 (408)
....+|++.++.. ++....+++|++|+|.|.|.+ |..++++|.++|++|+ +++.+- +++.+.
T Consensus 22 ~~~p~~~~a~v~l----~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~~----------~~l~~~-- 84 (168)
T cd01080 22 GFIPCTPAGILEL----LKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSKT----------KNLKEH-- 84 (168)
T ss_pred CccCChHHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECCc----------hhHHHH--
Confidence 3456777766654 444557899999999999984 8889999999999865 666541 112111
Q ss_pred hcCCcccCCCCeecCCCCcccccccEEeeccCC-CccccccccccccEEEEecCCCC
Q 015361 305 KTGSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFIIEAANHP 360 (408)
Q Consensus 305 ~~g~l~~~~~~~~i~~~ell~~~~DIliPaA~~-~~I~~~na~~i~akiIvEgAN~p 360 (408)
-.++||+|-|... +.|+.+..++ ..+|++-|..+
T Consensus 85 --------------------l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr 119 (168)
T cd01080 85 --------------------TKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR 119 (168)
T ss_pred --------------------HhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence 2257777777643 4566665433 36777777654
No 36
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.99 E-value=0.0021 Score=67.30 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhc
Q 015361 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (408)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~ 306 (408)
+...||.|++.+++.+ .+..+.|++|+|.|+|++|+.+|+.|...|++|+ |+|.+. ....+....
T Consensus 190 n~~gt~~s~~~ai~ra---t~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~dp----------~ra~~A~~~- 254 (425)
T PRK05476 190 NRYGTGESLLDGIKRA---TNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVDP----------ICALQAAMD- 254 (425)
T ss_pred ccHHHHhhhHHHHHHh---ccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCCc----------hhhHHHHhc-
Confidence 3456888877666543 2566899999999999999999999999999977 666531 122211111
Q ss_pred CCcccCCCCeecCCCCcccccccEEeeccC-CCcccccccccccc-EEEEecCC
Q 015361 307 GSLKDFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKA-KFIIEAAN 358 (408)
Q Consensus 307 g~l~~~~~~~~i~~~ell~~~~DIliPaA~-~~~I~~~na~~i~a-kiIvEgAN 358 (408)
+.+..+.++++. .+||+|+|+- .+.|+.+....++- .+++-.+-
T Consensus 255 -------G~~v~~l~eal~-~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 255 -------GFRVMTMEEAAE-LGDIFVTATGNKDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred -------CCEecCHHHHHh-CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 111222234433 7999999863 34566555555432 34444433
No 37
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.93 E-value=0.0059 Score=63.47 Aligned_cols=125 Identities=28% Similarity=0.340 Sum_probs=90.2
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCE--EEEeecCCCeEeCCC-CCCHHH-HHHhH-
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGK--VIAVSDITGAVKNAD-GIDIHK-LLAHK- 303 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~Gak--VVaVsD~~G~iydp~-GLDi~~-L~~~~- 303 (408)
.-||-=+..++-.+++..|++++..||++.|.|..|-.++++|...|.+ =+-+.|++|.+|+.. -++..+ ..++.
T Consensus 176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~ 255 (432)
T COG0281 176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAI 255 (432)
T ss_pred cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHH
Confidence 4677777788889999999999999999999999999999999999985 444999999999643 222221 11122
Q ss_pred hhcCCcccCCCCeecCCCCcccccccEEeeccCCCcccccccccccc-EEEEecCCCCCCHHH
Q 015361 304 DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA-KFIIEAANHPTDPEA 365 (408)
Q Consensus 304 ~~~g~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~a-kiIvEgAN~p~T~eA 365 (408)
+.++.. .. +.-..++|||+=|+..+.+|++-++++.. .+|---|| |+ ||+
T Consensus 256 ~~~~~~--------~~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaN-P~-pEi 306 (432)
T COG0281 256 EDTGER--------TL--DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALAN-PT-PEI 306 (432)
T ss_pred hhhccc--------cc--cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCC-CC-ccC
Confidence 121111 10 22455899999999999999998887633 57777777 44 443
No 38
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.90 E-value=0.011 Score=61.24 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 235 v~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
++..+-.+.+..|.++.|+||.|+|+|+||+.+|+.|...|.+|++.
T Consensus 99 ~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~ 145 (378)
T PRK15438 99 VFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLC 145 (378)
T ss_pred HHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence 33344444556688899999999999999999999999999999854
No 39
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.77 E-value=0.011 Score=59.03 Aligned_cols=94 Identities=17% Similarity=0.326 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhc
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~ 306 (408)
-.+|..|++.. +++.+.+++|++|+|.|-|+ ||+.++.+|.++|+.|+ +++++. ..|.+
T Consensus 138 ~PcTp~ai~~l----l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t----------~~l~~----- 197 (286)
T PRK14175 138 VPCTPLGIMEI----LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS----------KDMAS----- 197 (286)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc----------hhHHH-----
Confidence 46888887654 45678899999999999988 99999999999999988 666542 01111
Q ss_pred CCcccCCCCeecCCCCcccccccEEeeccC-CCccccccccccccEEEEecCCCC
Q 015361 307 GSLKDFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKAKFIIEAANHP 360 (408)
Q Consensus 307 g~l~~~~~~~~i~~~ell~~~~DIliPaA~-~~~I~~~na~~i~akiIvEgAN~p 360 (408)
....+||+|-|.. .+.|+++..+. ..+|++.+..+
T Consensus 198 -----------------~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~ 233 (286)
T PRK14175 198 -----------------YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP 233 (286)
T ss_pred -----------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence 1236788888764 33677665432 35777777766
No 40
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.77 E-value=0.0036 Score=55.03 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=68.0
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc--c
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--A 325 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell--~ 325 (408)
.+++++++.|.|.|.+|+.++..|.++|++-|.|.+.+ .+++.+..++.+. ...+.++-+++- .
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt----------~~ra~~l~~~~~~----~~~~~~~~~~~~~~~ 73 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT----------PERAEALAEEFGG----VNIEAIPLEDLEEAL 73 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS----------HHHHHHHHHHHTG----CSEEEEEGGGHCHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC----------HHHHHHHHHHcCc----cccceeeHHHHHHHH
Confidence 47999999999999999999999999999966687764 4555555544210 011122223332 3
Q ss_pred ccccEEeeccCCC--cccccccccccc--EEEEecCCCC-CCHH
Q 015361 326 HECDVLIPCALGG--VLKRENAADVKA--KFIIEAANHP-TDPE 364 (408)
Q Consensus 326 ~~~DIliPaA~~~--~I~~~na~~i~a--kiIvEgAN~p-~T~e 364 (408)
.++||+|-|.... .++++......- ++|++-|+-+ ++|+
T Consensus 74 ~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 74 QEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp HTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred hhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence 4799999997543 677777766543 6999999643 4443
No 41
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.74 E-value=0.0041 Score=56.19 Aligned_cols=106 Identities=29% Similarity=0.356 Sum_probs=64.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccEEe
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI 332 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DIli 332 (408)
++|.++|+|++|+.+|+.|.+.|+.|. +-|. +.+++.+..++. .+..+..+=+...||+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~----------~~~~~~~~~~~g--------~~~~~s~~e~~~~~dvvi 62 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDR----------SPEKAEALAEAG--------AEVADSPAEAAEQADVVI 62 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEES----------SHHHHHHHHHTT--------EEEESSHHHHHHHBSEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eecc----------chhhhhhhHHhh--------hhhhhhhhhHhhcccceE
Confidence 589999999999999999999999987 4443 345555554432 222222222234679888
Q ss_pred eccCCCc-----ccccc-cccc-ccEEEEecCCCC--CCHHHHHHHHhCCCeEE
Q 015361 333 PCALGGV-----LKREN-AADV-KAKFIIEAANHP--TDPEADEILSKRGVTIL 377 (408)
Q Consensus 333 PaA~~~~-----I~~~n-a~~i-~akiIvEgAN~p--~T~eA~~iL~~rGI~vv 377 (408)
-|-.... +..++ +..+ +-++|++-.+.. .+.+..+.++++|+.++
T Consensus 63 ~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 63 LCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp E-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred eecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 8754322 22222 2222 568888888775 35566788999999887
No 42
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.71 E-value=0.0054 Score=64.07 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=42.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
.-||.+++ ..+++..+..+.|++|+|+|+|.+|+.+++.+...|++|+ |.|.+
T Consensus 182 ~g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~d 234 (413)
T cd00401 182 YGCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEVD 234 (413)
T ss_pred chhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence 34666654 5556667888999999999999999999999999999987 56653
No 43
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.71 E-value=0.0078 Score=62.77 Aligned_cols=111 Identities=23% Similarity=0.345 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCC
Q 015361 234 GVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD 313 (408)
Q Consensus 234 Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~ 313 (408)
++..++-+.++..-.+|++++|.|+|.|.+|.-+|+.|.++|.+-|.|+..+ .+...++.++-+
T Consensus 160 Si~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT----------~erA~~La~~~~------ 223 (414)
T COG0373 160 SISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT----------LERAEELAKKLG------ 223 (414)
T ss_pred chHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHhC------
Confidence 4555555666655566999999999999999999999999998888898875 455555555533
Q ss_pred CCeecCCCCcc--cccccEEeec--cCCCcccccccccc---cc-EEEEecCCCCC
Q 015361 314 GGDSMEPSELL--AHECDVLIPC--ALGGVLKRENAADV---KA-KFIIEAANHPT 361 (408)
Q Consensus 314 ~~~~i~~~ell--~~~~DIliPa--A~~~~I~~~na~~i---~a-kiIvEgAN~p~ 361 (408)
++.++-+++. -.++||+|-| |...+|+.++.... +. .+|++-||-+.
T Consensus 224 -~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 224 -AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred -CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 3334434443 3489999998 56778888887764 22 39999999774
No 44
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.70 E-value=0.0059 Score=60.55 Aligned_cols=115 Identities=23% Similarity=0.359 Sum_probs=70.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccc--ccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH--ECD 329 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~--~~D 329 (408)
++|.|+|+|++|+..|+.|.+.|.+|+ +.|.+ .+.+.+..+. + .... +.+++... .+|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d 61 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYDRN----------PEAVEALAEE-G-------ATGADSLEELVAKLPAPR 61 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence 379999999999999999999999976 45553 2333333221 2 1111 23344432 367
Q ss_pred EEeeccCCCccccccccc----c-ccEEEEecCCC-C-CCHHHHHHHHhCCCeEEcchhcccccch
Q 015361 330 VLIPCALGGVLKRENAAD----V-KAKFIIEAANH-P-TDPEADEILSKRGVTILPDIYANSGGVT 388 (408)
Q Consensus 330 IliPaA~~~~I~~~na~~----i-~akiIvEgAN~-p-~T~eA~~iL~~rGI~vvPD~laNaGGVi 388 (408)
+++-|-.......+.... + .-++|+...+. | .+.+..+.++++|+.++ | ...+||+.
T Consensus 62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~ 125 (301)
T PRK09599 62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVW 125 (301)
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHH
Confidence 766664433222222222 2 23567777665 4 35566688999999998 6 56677753
No 45
>PRK12861 malic enzyme; Reviewed
Probab=96.60 E-value=0.038 Score=61.79 Aligned_cols=178 Identities=24% Similarity=0.278 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHhhhhhCCCCceeeCcccCCCCCCCCCChhHHHHHHHHHHHH
Q 015361 164 ERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALL 243 (408)
Q Consensus 164 er~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l 243 (408)
+.+. .|++.+.+-.|. |-=.|+... .--.+.++|++.... | ++. +.-.-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p--~~f~il~~~~~~~~i-p-vf~----------DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAP--ECFTVERKLRERMKI-P-VFH----------DDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCc--hHHHHHHHHHhcCCC-C-eec----------cccchHHHHHHHHHHHHH
Confidence 4566 888888877754 445666542 223355677652111 1 111 122467777778888899
Q ss_pred HHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC---EEEEeecCCCeEeCCCC--CCHHHHHHhHhhcCCcccCCCCeec
Q 015361 244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADG--IDIHKLLAHKDKTGSLKDFDGGDSM 318 (408)
Q Consensus 244 ~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iydp~G--LDi~~L~~~~~~~g~l~~~~~~~~i 318 (408)
+..|++++..||++.|.|..|..++++|.+.|. +++ +.|++|.++.... ++..+. .+.+.+ + ..
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~-~~a~~~----~-----~~ 249 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE-RFAQET----D-----AR 249 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH-HHHhhc----C-----CC
Confidence 999999999999999999999999999999998 565 8999999997543 543222 122211 1 01
Q ss_pred CCCCcccccccEEeeccCCCccccccccccc-cEEEEecCCCCC---CHHHHHHHHhCCC
Q 015361 319 EPSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT---DPEADEILSKRGV 374 (408)
Q Consensus 319 ~~~ell~~~~DIliPaA~~~~I~~~na~~i~-akiIvEgAN~p~---T~eA~~iL~~rGI 374 (408)
+-.|.+.. +||||=++..+.+|++-++.+. =.+|---|| |+ ||| ++.+.+|-
T Consensus 250 ~L~eai~~-advliG~S~~g~ft~e~v~~Ma~~PIIFaLsN-PtpE~~pe--~a~~~~g~ 305 (764)
T PRK12861 250 TLAEVIGG-ADVFLGLSAGGVLKAEMLKAMAARPLILALAN-PTPEIFPE--LAHATRDD 305 (764)
T ss_pred CHHHHHhc-CCEEEEcCCCCCCCHHHHHHhccCCEEEECCC-CCccCCHH--HHHhcCCC
Confidence 22344443 6999999999999999888873 357777777 54 553 44444454
No 46
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.59 E-value=0.015 Score=57.78 Aligned_cols=122 Identities=22% Similarity=0.207 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHC----CC------EEEEeecCCCeEeCCCC-CCHHHH
Q 015361 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----GG------KVIAVSDITGAVKNADG-IDIHKL 299 (408)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~----Ga------kVVaVsD~~G~iydp~G-LDi~~L 299 (408)
||-=+..++..+++..|++++..||+|.|.|..|.+++++|.+. |. +-+-+.|++|-+++... ++ +..
T Consensus 4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~-~~~ 82 (279)
T cd05312 4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLT-PFK 82 (279)
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcch-HHH
Confidence 55566677888888899999999999999999999999999765 87 44458999999998654 32 222
Q ss_pred HHhHhhcCCcccCCCCeecCCCCcc-cccccEEeeccC-CCccccccccccc----cEEEEecCCC
Q 015361 300 LAHKDKTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANH 359 (408)
Q Consensus 300 ~~~~~~~g~l~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~I~~~na~~i~----akiIvEgAN~ 359 (408)
..+.+.... ....+-.|.+ ..++||||=++. ++.+|++-++.+. =.+|---+|-
T Consensus 83 ~~~a~~~~~------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 142 (279)
T cd05312 83 KPFARKDEE------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP 142 (279)
T ss_pred HHHHhhcCc------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 222222110 0111223333 468999999884 7899998887763 4688888884
No 47
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0093 Score=60.39 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=32.3
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
|.++.|+||.|.|+|++|+.+|+.|...|.+|++.
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~ 171 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGY 171 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 45688999999999999999999999999999964
No 48
>PRK13529 malate dehydrogenase; Provisional
Probab=96.41 E-value=0.11 Score=56.30 Aligned_cols=184 Identities=20% Similarity=0.233 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHhhhhhCCCCceeeCcccCCCCCCCCCChhHHHHHH
Q 015361 158 LSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 237 (408)
Q Consensus 158 ~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~ 237 (408)
.+..|-..|...|++++.... |..-|-=.|++.. .---+.+.|+.. .| ++. +.-.-||-=+..
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~---i~-~Fn----------DDiQGTaaV~LA 280 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK--NARRILERYRDE---IC-TFN----------DDIQGTGAVTLA 280 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--hHHHHHHHhccC---CC-eec----------cccchHHHHHHH
Confidence 355677789999999998776 5544555677643 223355667641 11 111 112457777777
Q ss_pred HHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHH----CCC------EEEEeecCCCeEeCCCCCCHHHHHH-hHhhc
Q 015361 238 ATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE----RGG------KVIAVSDITGAVKNADGIDIHKLLA-HKDKT 306 (408)
Q Consensus 238 ~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~----~Ga------kVVaVsD~~G~iydp~GLDi~~L~~-~~~~~ 306 (408)
++-.+++..|.+++..||++.|.|..|-.+|++|.+ .|. +=+-+.|++|-+++..+ |+..-++ +.+..
T Consensus 281 gll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~-~l~~~k~~fa~~~ 359 (563)
T PRK13529 281 GLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMP-DLLDFQKPYARKR 359 (563)
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCC-cchHHHHHHhhhc
Confidence 888899999999999999999999999999999976 686 34458999999998665 3322222 22221
Q ss_pred CCcccCCCC-eecCCCCcc-cccccEEeeccC-CCccccccccccc----cEEEEecCCC
Q 015361 307 GSLKDFDGG-DSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANH 359 (408)
Q Consensus 307 g~l~~~~~~-~~i~~~ell-~~~~DIliPaA~-~~~I~~~na~~i~----akiIvEgAN~ 359 (408)
..+..++.. ...+-.|.+ ..+.||||=++. ++.+|++-++.+. =.||---+|-
T Consensus 360 ~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 419 (563)
T PRK13529 360 EELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP 419 (563)
T ss_pred ccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 122212110 001112333 567899999887 7899998887763 3688888874
No 49
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.35 E-value=0.097 Score=51.15 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcc
Q 015361 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (408)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~ 310 (408)
-+.|...++++ .+...+++++.|.|.|.+|+.++..|.+.|++|+ |.|.+ .+++.+..++-..
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R~----------~~~~~~la~~~~~-- 162 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANRT----------VSKAEELAERFQR-- 162 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHHhh--
Confidence 46677776553 3455678999999999999999999999998766 66653 2333333322110
Q ss_pred cCCCCeecCCCCcccccccEEeeccCCCccccc-----ccccc-ccEEEEecCCCCC-CHHHHHHHHhCCCeEEc
Q 015361 311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRE-----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP 378 (408)
Q Consensus 311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~-----na~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~vvP 378 (408)
+......+.++....++|++|-|..-..-... ....+ .-++|++-.-.|. | .-.+..+++|+.++.
T Consensus 163 -~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 163 -YGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-PFLAEAKSLGTKTID 235 (270)
T ss_pred -cCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-HHHHHHHHCCCeeeC
Confidence 10011122222222479999999764321111 11123 2358889888875 5 466778899988764
No 50
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.32 E-value=0.022 Score=57.14 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.++.|+||.|.|+|++|+.+|+++...|.+|++. |.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~-d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYY-ST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEE-CC
Confidence 4689999999999999999999999999999864 44
No 51
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.31 E-value=0.032 Score=56.17 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
.++.|+||.|.|+|++|+.+|+++...|.+|++.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~ 176 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA 176 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE
Confidence 3589999999999999999999999999999975
No 52
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.29 E-value=0.088 Score=51.78 Aligned_cols=131 Identities=17% Similarity=0.198 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcc
Q 015361 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (408)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~ 310 (408)
.+.|.+.++++ ..+.++++++|.|.|.|.+|+.++..|.+.|++-|.|.+.+ .+++.+..++-....
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~----------~~~a~~l~~~~~~~~ 171 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT----------VERAEELAKLFGALG 171 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHHhhhcc
Confidence 35666666542 24667899999999999999999999999995444477764 233333333211110
Q ss_pred cCCCCee-cCCCCcccccccEEeeccCCCccc-----ccccccc-ccEEEEecCCCCCCHHHHHHHHhCCCeEEc
Q 015361 311 DFDGGDS-MEPSELLAHECDVLIPCALGGVLK-----RENAADV-KAKFIIEAANHPTDPEADEILSKRGVTILP 378 (408)
Q Consensus 311 ~~~~~~~-i~~~ell~~~~DIliPaA~~~~I~-----~~na~~i-~akiIvEgAN~p~T~eA~~iL~~rGI~vvP 378 (408)
.... .+..+.+ .++||+|-|.....-. +-....+ +-++|++-.-.|..-.-.+.-+++|+.++.
T Consensus 172 ---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 172 ---KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTID 242 (278)
T ss_pred ---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeecC
Confidence 0011 1111222 4689999987654322 1111223 346899999888533355667788987754
No 53
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.28 E-value=0.032 Score=62.40 Aligned_cols=119 Identities=24% Similarity=0.277 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC---EEEEeecCCCeEeCCC--CCCHHHHHHhH
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNAD--GIDIHKLLAHK 303 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iydp~--GLDi~~L~~~~ 303 (408)
..||-=+..++..+++..|++++..||++.|.|..|-.++++|...|. ++ -+.|++|.++... +++..+. .+
T Consensus 162 ~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i-~~~D~~G~i~~~r~~~~~~~k~--~~ 238 (752)
T PRK07232 162 HGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENI-IVCDSKGVIYKGRTEGMDEWKA--AY 238 (752)
T ss_pred chHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccE-EEEcCCCeecCCCcccccHHHH--HH
Confidence 467777788888999999999999999999999999999999999998 45 4999999999865 3443222 11
Q ss_pred hhcCCcccCCCCeecCCCCcccccccEEeeccCCCccccccccccc-cEEEEecCCC
Q 015361 304 DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANH 359 (408)
Q Consensus 304 ~~~g~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~-akiIvEgAN~ 359 (408)
.+. .+ ..+-.|.+.. +||||=++.++.+|++-++.+. -.+|---||-
T Consensus 239 a~~---~~-----~~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP 286 (752)
T PRK07232 239 AVD---TD-----ARTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALANP 286 (752)
T ss_pred hcc---CC-----CCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCCC
Confidence 111 11 0122344444 8999999999999999888763 4577777774
No 54
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.26 E-value=0.018 Score=56.49 Aligned_cols=121 Identities=20% Similarity=0.146 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCE----------EEEeecCCCeEeCCCC-CCHHHH
Q 015361 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGK----------VIAVSDITGAVKNADG-IDIHKL 299 (408)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~Gak----------VVaVsD~~G~iydp~G-LDi~~L 299 (408)
||-=+..++..+++..|++++..||++.|.|..|-.+|++|.+.+.+ =+-+.|++|-+++... ++..+.
T Consensus 4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~ 83 (254)
T cd00762 4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEY 83 (254)
T ss_pred hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHH
Confidence 55556677788888889999999999999999999999999876653 3458999999998654 433221
Q ss_pred H--HhHhhcCCcccCCCCeecCCCCcc-cccccEEeeccC-CCccccccccccc----cEEEEecCCC
Q 015361 300 L--AHKDKTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANH 359 (408)
Q Consensus 300 ~--~~~~~~g~l~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~I~~~na~~i~----akiIvEgAN~ 359 (408)
. ++.+.. .+..+-.|.+ ..+.||||=++. ++.+|++-++.+. =.+|---+|-
T Consensus 84 ~~~~~~~~~--------~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 143 (254)
T cd00762 84 HLARFANPE--------RESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNP 143 (254)
T ss_pred HHHHHcCcc--------cccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCc
Confidence 1 111110 0111222333 458899998877 8888888777653 4677777773
No 55
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.23 E-value=0.082 Score=52.41 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc
Q 015361 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~ 311 (408)
+.|...++++ .+.++++++|+|.|.|.+|+.++..|.+.|++-|.|.|.+ .++..+..+.-+. .
T Consensus 111 ~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~~--~ 174 (284)
T PRK12549 111 WSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELNA--R 174 (284)
T ss_pred HHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHHh--h
Confidence 6677777763 3346788999999999999999999999998656687764 2333333221100 0
Q ss_pred CCCCeecCCCCcc--cccccEEeeccCCCccccc----ccccc-ccEEEEecCCCCCCHHHHHHHHhCCCeEEc
Q 015361 312 FDGGDSMEPSELL--AHECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHPTDPEADEILSKRGVTILP 378 (408)
Q Consensus 312 ~~~~~~i~~~ell--~~~~DIliPaA~~~~I~~~----na~~i-~akiIvEgAN~p~T~eA~~iL~~rGI~vvP 378 (408)
++.......+++. -.++||+|-|..-+.-... +...+ +..+|.+-...|....--+.-+++|..++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 175 FPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTLD 248 (284)
T ss_pred CCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEec
Confidence 1111111112211 2469999998643321111 11123 345888999888633466667788988764
No 56
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.22 E-value=0.012 Score=61.59 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=29.5
Q ss_pred CCeEEEEccChHHHHHHHHHHHC----------CCEEEEeecCCC
Q 015361 252 DLTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITG 286 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G 286 (408)
..+|+|.|+|+||+.+++.|.+. +.++++|+|++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~ 47 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDL 47 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCCh
Confidence 46899999999999999988653 478999999863
No 57
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.18 E-value=0.018 Score=58.40 Aligned_cols=105 Identities=22% Similarity=0.257 Sum_probs=61.6
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccc
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH 326 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~ 326 (408)
|.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. + ... .... +....+.++++ .
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~-----~---~~~----~~~~-------~~~~~~l~ell-~ 203 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILY-YSRTR-----K---PEA----EKEL-------GAEYRPLEELL-R 203 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCCC-----C---hhh----HHHc-------CCEecCHHHHH-h
Confidence 4568999999999999999999999999999884 45431 0 000 0010 11122233443 3
Q ss_pred cccEEeeccCC-----Cccccccccccc-cEEEEecCCCCC-CHHHH-HHHHhC
Q 015361 327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKR 372 (408)
Q Consensus 327 ~~DIliPaA~~-----~~I~~~na~~i~-akiIvEgAN~p~-T~eA~-~iL~~r 372 (408)
.||+++-|..- +.|+.+....++ -.+++.-|=+++ ..+|- +.|++.
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 67888777642 334444444442 356666666664 33333 455444
No 58
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.18 E-value=0.043 Score=55.25 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEee
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (408)
.++.|+||.|.|+|++|+.+|++|...|.+|++..
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~ 178 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ 178 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC
Confidence 36899999999999999999999999999999753
No 59
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.17 E-value=0.022 Score=56.12 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=67.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHH--CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccccc
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHE--RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~ 327 (408)
++.+||.|.|+|++|+..++.|.+ .++++++|.|.+ .++..+..++.+....+ -+.++++ .+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~----------~~~a~~~a~~~g~~~~~-----~~~eell-~~ 67 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD----------PQRHADFIWGLRRPPPV-----VPLDQLA-TH 67 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC----------HHHHHHHHHhcCCCccc-----CCHHHHh-cC
Confidence 456899999999999999998876 478999998874 33443333332211111 2335565 46
Q ss_pred ccEEeeccCCCccccccccc---cccEEEEecCCCC-CCHHHHHHHHhCCCeE-Ec
Q 015361 328 CDVLIPCALGGVLKRENAAD---VKAKFIIEAANHP-TDPEADEILSKRGVTI-LP 378 (408)
Q Consensus 328 ~DIliPaA~~~~I~~~na~~---i~akiIvEgAN~p-~T~eA~~iL~~rGI~v-vP 378 (408)
+|+++.|+..... .+-+.+ -+..++++..-.. ...+..+..+++|+.+ +|
T Consensus 68 ~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 68 ADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred CCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 8999999865433 333222 2445777632111 1233445667888765 54
No 60
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.15 E-value=0.039 Score=55.34 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=31.1
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (408)
++.|++|.|.|+|++|+.+|++|...|++|++..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~ 152 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYT 152 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 5899999999999999999999999999998653
No 61
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.12 E-value=0.14 Score=55.66 Aligned_cols=179 Identities=20% Similarity=0.214 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHhhhhhCCCCceeeCcccCCCCCCCCCChhHHHHHH
Q 015361 158 LSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 237 (408)
Q Consensus 158 ~s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~ 237 (408)
.+..|-..+...|++++..-.||..-|-=.|++... ---+.+.|+. ..| ++. +.-..||-=+..
T Consensus 243 v~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~---~i~-~Fn----------DDiQGTaaV~lA 306 (581)
T PLN03129 243 LTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRT---THL-CFN----------DDIQGTAAVALA 306 (581)
T ss_pred CchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhcc---CCC-Eec----------cccchHHHHHHH
Confidence 345667789999999999988886555566776532 2234566642 111 111 122467777778
Q ss_pred HHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHH-----CCC------EEEEeecCCCeEeCCCCCCHHHHHHhHhhc
Q 015361 238 ATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE-----RGG------KVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (408)
Q Consensus 238 ~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~-----~Ga------kVVaVsD~~G~iydp~GLDi~~L~~~~~~~ 306 (408)
++-.+++..|.+++..||++.|.|..|-.+|++|.+ .|. +=+-+.|++|-+++...-++..-++.+.+.
T Consensus 307 gll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~ 386 (581)
T PLN03129 307 GLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD 386 (581)
T ss_pred HHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh
Confidence 888899989999999999999999999999999976 475 334589999999986542122222222221
Q ss_pred CCcccCCCCeecCCCCcc-cccccEEeeccC-CCcccccccccc----ccEEEEecCCC
Q 015361 307 GSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANH 359 (408)
Q Consensus 307 g~l~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~I~~~na~~i----~akiIvEgAN~ 359 (408)
. ....+-.|.+ ..+.||||=++. ++.+|++-++.+ +=.||---+|-
T Consensus 387 ~-------~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 387 H-------EPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred c-------ccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 1 0011223333 568999999885 689999888776 45788888884
No 62
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.07 E-value=0.022 Score=55.48 Aligned_cols=109 Identities=18% Similarity=0.181 Sum_probs=66.7
Q ss_pred CeEEEEcc-ChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccE
Q 015361 253 LTFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (408)
Q Consensus 253 ~rvaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DI 330 (408)
+||+|.|+ |.+|+..++.+.+ .++++++++|.+..-... . .+ ..+..+ -+-++++. ++|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~----------~-~~-~~i~~~-----~dl~~ll~-~~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG----------Q-GA-LGVAIT-----DDLEAVLA-DADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc----------c-CC-CCcccc-----CCHHHhcc-CCCE
Confidence 58999998 9999999998876 579999999976421110 0 10 111111 12234554 7999
Q ss_pred EeeccCCCccccccccc---cccEEEEecCCCCCCH-HHHHHH---HhCCCeEEcchhc
Q 015361 331 LIPCALGGVLKRENAAD---VKAKFIIEAANHPTDP-EADEIL---SKRGVTILPDIYA 382 (408)
Q Consensus 331 liPaA~~~~I~~~na~~---i~akiIvEgAN~p~T~-eA~~iL---~~rGI~vvPD~la 382 (408)
++.|+.++.. .+++.. -+..+|++ ....++ +++++. ++.++++.|.+.-
T Consensus 64 Vid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 64 LIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 9999865544 455443 36678877 344454 443333 3356777776643
No 63
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.02 E-value=0.019 Score=56.39 Aligned_cols=123 Identities=24% Similarity=0.231 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHC----CC------EEEEeecCCCeEeCCCCCCHHHHH
Q 015361 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----GG------KVIAVSDITGAVKNADGIDIHKLL 300 (408)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~----Ga------kVVaVsD~~G~iydp~GLDi~~L~ 300 (408)
||-=+..++-.+++..|.+|+..||++.|.|..|-.++++|.+. |. +=+-+.|++|-+++.. -|+..-+
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~ 82 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHK 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhh
Confidence 55556667788889899999999999999999999999999876 87 4555999999999765 3333322
Q ss_pred HhHhh-cCCcccCCCCeecCCCCcc-cccccEEeecc-CCCccccccccccc----cEEEEecCCC
Q 015361 301 AHKDK-TGSLKDFDGGDSMEPSELL-AHECDVLIPCA-LGGVLKRENAADVK----AKFIIEAANH 359 (408)
Q Consensus 301 ~~~~~-~g~l~~~~~~~~i~~~ell-~~~~DIliPaA-~~~~I~~~na~~i~----akiIvEgAN~ 359 (408)
+.+.+ ...... ..+-.|.+ ..+.||||=++ .++.+|++-++.+. -.+|---+|-
T Consensus 83 ~~~a~~~~~~~~-----~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP 143 (255)
T PF03949_consen 83 KPFARKTNPEKD-----WGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP 143 (255)
T ss_dssp HHHHBSSSTTT-------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred hhhhccCccccc-----ccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence 22221 111110 11212222 56789999998 78999999888874 4788888884
No 64
>PRK12862 malic enzyme; Reviewed
Probab=96.01 E-value=0.05 Score=61.04 Aligned_cols=119 Identities=28% Similarity=0.274 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC---EEEEeecCCCeEeCCC--CCCHHHHHHhH
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNAD--GIDIHKLLAHK 303 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iydp~--GLDi~~L~~~~ 303 (408)
.-||-=+..++..+++..|++++..||++.|.|..|..++++|...|. ++ -+.|++|.++... +++..+. .+.
T Consensus 170 ~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i-~~~D~~G~i~~~r~~~l~~~~~-~~a 247 (763)
T PRK12862 170 HGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENI-WVTDIKGVVYEGRTELMDPWKA-RYA 247 (763)
T ss_pred ccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccE-EEEcCCCeeeCCCCccccHHHH-HHh
Confidence 467777778888899999999999999999999999999999999998 45 4899999999755 3543322 122
Q ss_pred hhcCCcccCCCCeecCCCCcccccccEEeeccCCCccccccccccc-cEEEEecCCC
Q 015361 304 DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANH 359 (408)
Q Consensus 304 ~~~g~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~-akiIvEgAN~ 359 (408)
+.+ +. -+-.|.+.. +||||=++.++.+|++-++.+. =.+|---||-
T Consensus 248 ~~~----~~-----~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP 294 (763)
T PRK12862 248 QKT----DA-----RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALANP 294 (763)
T ss_pred hhc----cc-----CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCC
Confidence 211 10 122444544 8999999999999999888873 3577777874
No 65
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.00 E-value=0.019 Score=58.05 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=30.9
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHH-HCCCEEEE
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLIH-ERGGKVIA 280 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L~-~~GakVVa 280 (408)
|.++.|+|+.|.|+|++|+.+|+.+. ..|.+|++
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~ 174 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY 174 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE
Confidence 45689999999999999999999997 89999984
No 66
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.00 E-value=0.026 Score=56.00 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=68.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccc--ccccE
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA--HECDV 330 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~--~~~DI 330 (408)
++|.|+|+|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. + ...+. +.+++.+ ..+|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr~----------~~~~~~l~~~-g-~~~~~-----s~~~~~~~~~~~dv 62 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDHD----------QDAVKAMKED-R-TTGVA-----NLRELSQRLSAPRV 62 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHc-C-CcccC-----CHHHHHhhcCCCCE
Confidence 379999999999999999999999987 45543 3444444332 2 11111 1223221 35899
Q ss_pred EeeccCCCcccccccc----cc-ccEEEEecCCCC--CCHHHHHHHHhCCCeEEc
Q 015361 331 LIPCALGGVLKRENAA----DV-KAKFIIEAANHP--TDPEADEILSKRGVTILP 378 (408)
Q Consensus 331 liPaA~~~~I~~~na~----~i-~akiIvEgAN~p--~T~eA~~iL~~rGI~vvP 378 (408)
++-|.... ...+.++ .+ +-++|++..|.. .|.+..+.++++|+.++-
T Consensus 63 Ii~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 63 VWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred EEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 88775443 2222222 23 236899999984 566777789999998763
No 67
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.99 E-value=0.01 Score=48.26 Aligned_cols=71 Identities=30% Similarity=0.272 Sum_probs=48.0
Q ss_pred eEEEEccChHHHHHHHHHHHCC---CEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccE
Q 015361 254 TFVIQGFGNVGSWAARLIHERG---GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DI 330 (408)
|++|.|+||+|+.+++-|.+.| .+|.-+++.+ .+.+.+.+++.+.- ....++.+++. ++|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~-~adv 64 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS----------PEKAAELAKEYGVQ-----ATADDNEEAAQ-EADV 64 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS----------HHHHHHHHHHCTTE-----EESEEHHHHHH-HTSE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc----------HHHHHHHHHhhccc-----cccCChHHhhc-cCCE
Confidence 6899999999999999999999 8887555654 56666666554310 00113445555 8999
Q ss_pred EeeccCCCcc
Q 015361 331 LIPCALGGVL 340 (408)
Q Consensus 331 liPaA~~~~I 340 (408)
++-|-....+
T Consensus 65 vilav~p~~~ 74 (96)
T PF03807_consen 65 VILAVKPQQL 74 (96)
T ss_dssp EEE-S-GGGH
T ss_pred EEEEECHHHH
Confidence 9999655544
No 68
>PLN02494 adenosylhomocysteinase
Probab=95.98 E-value=0.038 Score=58.69 Aligned_cols=52 Identities=27% Similarity=0.448 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.-||.++ ++.+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ +.|.
T Consensus 234 yGtgqS~---~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~ 285 (477)
T PLN02494 234 YGCRHSL---PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEI 285 (477)
T ss_pred ccccccH---HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4456665 44455666778999999999999999999999999999987 4554
No 69
>PLN03139 formate dehydrogenase; Provisional
Probab=95.90 E-value=0.032 Score=57.87 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECC
Confidence 468999999999999999999999999999974 454
No 70
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.89 E-value=0.017 Score=59.80 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 238 ATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 238 ~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+-.+.+..|.++.|+||.|+|+||+|+.+|+.|...|.+|++. |.
T Consensus 102 ~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~-Dp 147 (381)
T PRK00257 102 SLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVC-DP 147 (381)
T ss_pred HHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEE-CC
Confidence 33344456678899999999999999999999999999999854 54
No 71
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.87 E-value=0.034 Score=51.40 Aligned_cols=123 Identities=23% Similarity=0.243 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCC
Q 015361 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308 (408)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~ 308 (408)
-|++-.+..++..+++.|.++++++++|.|. |.+|+.+++.|.+.|++|+.+ +.+ .+++.+..++-..
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R~----------~~~~~~l~~~l~~ 74 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GRD----------LERAQKAADSLRA 74 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cCC----------HHHHHHHHHHHHh
Confidence 4777777888888888899999999999996 999999999999999988744 443 2333332221100
Q ss_pred cccCCCCee--c-CCCCcc--cccccEEeeccCCCcccccccc-ccc-cEEEEecCCCC-CCHH
Q 015361 309 LKDFDGGDS--M-EPSELL--AHECDVLIPCALGGVLKRENAA-DVK-AKFIIEAANHP-TDPE 364 (408)
Q Consensus 309 l~~~~~~~~--i-~~~ell--~~~~DIliPaA~~~~I~~~na~-~i~-akiIvEgAN~p-~T~e 364 (408)
-.+. .... . +.+++. -.+||++|-|+.....+..... ..+ .+++++-+..| ++++
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~ 137 (194)
T cd01078 75 RFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIE 137 (194)
T ss_pred hcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCcc
Confidence 0000 0001 1 111111 2379999998765543211111 223 46888866665 5664
No 72
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.81 E-value=0.022 Score=55.85 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=64.3
Q ss_pred CeEEEEccChHHHHHHHHHHHC--CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccE
Q 015361 253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DI 330 (408)
+||+|.|+|++|+..++.|.+. +.++++|.|.+ .+...+..++.+ . ...-+.++++ .++|+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~----------~~~a~~~a~~~~-~-----~~~~~~~ell-~~~Dv 64 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN----------LEKAENLASKTG-A-----KACLSIDELV-EDVDL 64 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC----------HHHHHHHHHhcC-C-----eeECCHHHHh-cCCCE
Confidence 4899999999999999988775 58889898875 233333322211 1 1112335666 68999
Q ss_pred EeeccCCCccccccccc---cccEEEEecC----CCCCCHHHHHHHHhCCCeEE
Q 015361 331 LIPCALGGVLKRENAAD---VKAKFIIEAA----NHPTDPEADEILSKRGVTIL 377 (408)
Q Consensus 331 liPaA~~~~I~~~na~~---i~akiIvEgA----N~p~T~eA~~iL~~rGI~vv 377 (408)
++.|+..... .+.+.+ -+..+|++.. +-+...+..+..+++|+.+.
T Consensus 65 Vvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 65 VVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred EEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 9999864433 333332 2445666532 22222334456677786543
No 73
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.81 E-value=0.024 Score=60.20 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=69.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhh---cCC-cccCCCCeecCCCCcccc--
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK---TGS-LKDFDGGDSMEPSELLAH-- 326 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~---~g~-l~~~~~~~~i~~~ell~~-- 326 (408)
.+|.|+|.|++|+++|+.|.+.|++|+ +-|.+ .+...+..+. .+. +..+ -+.+++...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~i~~~-----~s~~e~v~~l~ 65 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYNRT----------YEKTEEFVKKAKEGNTRVKGY-----HTLEELVNSLK 65 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhhhhcCCcceec-----CCHHHHHhcCC
Confidence 379999999999999999999999876 44543 3443333322 121 1111 133455432
Q ss_pred cccEEeeccCCCcccccc----cccc-ccEEEEecCCCC--CCHHHHHHHHhCCCeEE
Q 015361 327 ECDVLIPCALGGVLKREN----AADV-KAKFIIEAANHP--TDPEADEILSKRGVTIL 377 (408)
Q Consensus 327 ~~DIliPaA~~~~I~~~n----a~~i-~akiIvEgAN~p--~T~eA~~iL~~rGI~vv 377 (408)
++|+++-|........+. .+.+ .-++|+++.|.- .|.+-.+.+.++||.++
T Consensus 66 ~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fl 123 (470)
T PTZ00142 66 KPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYL 123 (470)
T ss_pred CCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 588777765444333332 2333 357999999985 35566678999999986
No 74
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.051 Score=55.10 Aligned_cols=96 Identities=28% Similarity=0.411 Sum_probs=58.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCC--CEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCC-------------e-
Q 015361 253 LTFVIQGFGNVGSWAARLIHERG--GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGG-------------D- 316 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~G--akVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~-------------~- 316 (408)
.||+|-|||-+|+.+++.+.+.+ .+||||.|.. |++-+.-+.+.......|++. .
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t---------~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDLT---------DPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCC---------CHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 58999999999999999998875 9999999952 222222222221112222211 1
Q ss_pred e----cCCCC--cccccccEEeeccCCCccccccccc-c---ccEEEEecCC
Q 015361 317 S----MEPSE--LLAHECDVLIPCALGGVLKRENAAD-V---KAKFIIEAAN 358 (408)
Q Consensus 317 ~----i~~~e--ll~~~~DIliPaA~~~~I~~~na~~-i---~akiIvEgAN 358 (408)
. .+++. +-+..+||.++|..... +.+|+.+ + +||-|.-+|=
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isap 123 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISAP 123 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcCC
Confidence 0 11111 12556889999976554 7888875 3 3676666653
No 75
>PRK07574 formate dehydrogenase; Provisional
Probab=95.75 E-value=0.046 Score=56.69 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=63.6
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCee-cCCCCcccc
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS-MEPSELLAH 326 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~-i~~~ell~~ 326 (408)
.++.|++|.|.|+|++|+.+|+.|...|.+|++. |.+ ..+.+.. +.. +.+. .+.++++ .
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~-dr~-------~~~~~~~----~~~-------g~~~~~~l~ell-~ 247 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT-DRH-------RLPEEVE----QEL-------GLTYHVSFDSLV-S 247 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CCC-------CCchhhH----hhc-------CceecCCHHHHh-h
Confidence 3589999999999999999999999999999843 432 2221111 000 1111 1233444 4
Q ss_pred cccEEeeccC-----CCccccccccccc-cEEEEecCCCCCC-HHH-HHHHHhCCC
Q 015361 327 ECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPTD-PEA-DEILSKRGV 374 (408)
Q Consensus 327 ~~DIliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~T-~eA-~~iL~~rGI 374 (408)
.||+++-+.. .+.|+++....++ -.+++.-|-+++. .+| .+.|++.-|
T Consensus 248 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i 303 (385)
T PRK07574 248 VCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHL 303 (385)
T ss_pred cCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCc
Confidence 6788877764 3344444444442 3577777777753 333 255655444
No 76
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.73 E-value=0.0039 Score=54.14 Aligned_cols=73 Identities=26% Similarity=0.284 Sum_probs=47.8
Q ss_pred CeEEEEcc-ChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCccccccc
Q 015361 253 LTFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD 329 (408)
Q Consensus 253 ~rvaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~D 329 (408)
+||+|.|+ |++|+.+++.+.+ .+..++++.|++.. +-.|-|+.++...... +.... +.++++.. +|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--~~~g~d~g~~~~~~~~--------~~~v~~~l~~~~~~-~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--AKVGKDVGELAGIGPL--------GVPVTDDLEELLEE-AD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--TTTTSBCHHHCTSST---------SSBEBS-HHHHTTH--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--ccccchhhhhhCcCCc--------ccccchhHHHhccc-CC
Confidence 48999999 9999999999987 89999999998762 1235555554332110 11111 12345555 99
Q ss_pred EEeeccC
Q 015361 330 VLIPCAL 336 (408)
Q Consensus 330 IliPaA~ 336 (408)
|+|.++.
T Consensus 70 VvIDfT~ 76 (124)
T PF01113_consen 70 VVIDFTN 76 (124)
T ss_dssp EEEEES-
T ss_pred EEEEcCC
Confidence 9999874
No 77
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.73 E-value=0.029 Score=57.47 Aligned_cols=106 Identities=24% Similarity=0.325 Sum_probs=71.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhh
Q 015361 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK 305 (408)
Q Consensus 226 gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~ 305 (408)
+...-||.+.+-++..+ .+.-+.||+++|.|||.||+..|..|...|++|+ |.+.+- +.+|.+..+
T Consensus 186 DNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvDP---------I~AleA~Md- 251 (420)
T COG0499 186 DNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVDP---------IRALEAAMD- 251 (420)
T ss_pred ccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecCc---------hHHHHHhhc-
Confidence 34456777766665543 4566899999999999999999999999999987 877652 444443322
Q ss_pred cCCcccCCCCeecCCCCcccccccEEeeccC-CCccccccccccccEEEE
Q 015361 306 TGSLKDFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKAKFII 354 (408)
Q Consensus 306 ~g~l~~~~~~~~i~~~ell~~~~DIliPaA~-~~~I~~~na~~i~akiIv 354 (408)
|.+.++-++. ....||||-|.- .++|+.+....++=-.|+
T Consensus 252 --------Gf~V~~m~~A-a~~gDifiT~TGnkdVi~~eh~~~MkDgaIl 292 (420)
T COG0499 252 --------GFRVMTMEEA-AKTGDIFVTATGNKDVIRKEHFEKMKDGAIL 292 (420)
T ss_pred --------CcEEEEhHHh-hhcCCEEEEccCCcCccCHHHHHhccCCeEE
Confidence 2233322222 224599999864 567888877776554444
No 78
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.71 E-value=0.17 Score=45.26 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
..|..|+ .+++++.|.+++|++|.|.| ...||..++.+|.++|+.|. +++++
T Consensus 9 p~t~~a~----~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~ 61 (140)
T cd05212 9 SPVAKAV----KELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWK 61 (140)
T ss_pred ccHHHHH----HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCC
Confidence 3566555 45566789999999999999 58899999999999999998 55653
No 79
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.70 E-value=0.028 Score=55.50 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=49.4
Q ss_pred CCeEEEEccChHHHHHHHHHHHC---CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCccccc
Q 015361 252 DLTFVIQGFGNVGSWAARLIHER---GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE 327 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~---GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~ 327 (408)
..||.|+|||++|+.+++.|... ++.+++|.|++. +...+.... ...+ +.++++..+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----------~~~~~~~~~---------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----------DLPPALAGR---------VALLDGLPGLLAWR 62 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----------HHHHHhhcc---------CcccCCHHHHhhcC
Confidence 36899999999999999988643 378888877642 222221111 1122 346777889
Q ss_pred ccEEeeccCCCcccc
Q 015361 328 CDVLIPCALGGVLKR 342 (408)
Q Consensus 328 ~DIliPaA~~~~I~~ 342 (408)
+|++++||....+-+
T Consensus 63 ~DlVVE~A~~~av~e 77 (267)
T PRK13301 63 PDLVVEAAGQQAIAE 77 (267)
T ss_pred CCEEEECCCHHHHHH
Confidence 999999998776643
No 80
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.68 E-value=0.17 Score=53.92 Aligned_cols=122 Identities=17% Similarity=0.300 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcC-Cc
Q 015361 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG-SL 309 (408)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g-~l 309 (408)
-+.|...+++ +.+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.|.+ .+++.+..++.+ ..
T Consensus 315 D~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R~----------~~~~~~la~~~~~~~ 379 (477)
T PRK09310 315 DGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNRT----------KAHAEALASRCQGKA 379 (477)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHhccce
Confidence 3567766664 45678899999999999999999999999999776 55542 233333333211 11
Q ss_pred ccCCCCeecCCCCcccccccEEeeccCCCccccccccccccEEEEecCCCCC-CHHHHHHHHhCCCeEEcc
Q 015361 310 KDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPT-DPEADEILSKRGVTILPD 379 (408)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~-T~eA~~iL~~rGI~vvPD 379 (408)
..+. .. .+ + .++|++|-|...+..-.+ .+. ++|++-.-.|. |+ --+..+++|+.++..
T Consensus 380 ~~~~---~~--~~-l-~~~DiVInatP~g~~~~~---~l~-~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~G 438 (477)
T PRK09310 380 FPLE---SL--PE-L-HRIDIIINCLPPSVTIPK---AFP-PCVVDINTLPKHSP-YTQYARSQGSSIIYG 438 (477)
T ss_pred echh---Hh--cc-c-CCCCEEEEcCCCCCcchh---HHh-hhEEeccCCCCCCH-HHHHHHHCcCEEECc
Confidence 1110 01 11 2 378999998754432111 122 48999998884 65 556778899887643
No 81
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=95.67 E-value=0.24 Score=53.55 Aligned_cols=183 Identities=19% Similarity=0.180 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCChhHHHHHHHHhhhhhCCCCceeeCcccCCCCCCCCCChhHHHHHHH
Q 015361 159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYA 238 (408)
Q Consensus 159 s~~Eler~~r~f~~~l~~~iG~~~dipapDvgt~~~~m~wi~d~y~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~ 238 (408)
+..|-..|...|++++.... |..-|-=.|++.. .---+.+.|+.. .| ++. +.-.-||-=+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~--naf~iL~kyr~~---i~-~Fn----------DDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNN--HCFDLLERYQNK---YR-CFN----------DDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--cHHHHHHHhccC---CC-Eec----------ccchhHHHHHHHH
Confidence 56677889999999998877 5544555677653 223355677632 11 111 1124577777778
Q ss_pred HHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHH----HCCC------EEEEeecCCCeEeCCCCCCHHHHHHhHhhcCC
Q 015361 239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIH----ERGG------KVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308 (408)
Q Consensus 239 ~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~----~~Ga------kVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~ 308 (408)
+..+++..|.+++..||++.|.|..|-.+|++|. +.|. +=+-+.|++|-+++..+=++..-+..+.+...
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~ 363 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDI 363 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccc
Confidence 8889998999999999999999999999999887 4787 34458999999998664112222221111100
Q ss_pred cccCCCCeecCCCCcc-cccccEEeeccC-CCccccccccccc----cEEEEecCCCCC
Q 015361 309 LKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANHPT 361 (408)
Q Consensus 309 l~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~I~~~na~~i~----akiIvEgAN~p~ 361 (408)
.-++.+..+-.|.+ ..+.||||=++. .+.+|++-++.+. =.||---+| |+
T Consensus 364 --~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSN-Pt 419 (559)
T PTZ00317 364 --SAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSN-PT 419 (559)
T ss_pred --ccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence 00000011112222 567899999886 7899988877653 468888887 44
No 82
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.64 E-value=0.058 Score=53.67 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGn-VG~~~a~~L~~~GakVVaVsD~ 284 (408)
...|-+|++..++ +.+.+++|++|+|.|.|+ ||+.++.+|.++|+.| .|+++
T Consensus 139 ~p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatV-tv~~~ 191 (283)
T PRK14192 139 GSATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANATV-TICHS 191 (283)
T ss_pred cCCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEE-EEEeC
Confidence 3577777766554 578899999999999998 9999999999999954 47776
No 83
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.62 E-value=0.19 Score=49.70 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCc
Q 015361 232 GRGVVYATEALLAEHGQ--AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~--~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l 309 (408)
+.|.+.+++ +.+. ++++++|+|.|.|.+|+.++..|.+.|++-|.|.+.+ .++..+..++-+..
T Consensus 107 ~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------~~ka~~La~~~~~~ 172 (282)
T TIGR01809 107 WDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------PDKLSRLVDLGVQV 172 (282)
T ss_pred HHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------HHHHHHHHHHhhhc
Confidence 567777765 3442 5789999999999999999999999998766687764 23333333221110
Q ss_pred ccCCCCeecCC-CCc--ccccccEEeeccCCC-cccccccc---------cc-ccEEEEecCCCCC-CHHHHHHHHhCCC
Q 015361 310 KDFDGGDSMEP-SEL--LAHECDVLIPCALGG-VLKRENAA---------DV-KAKFIIEAANHPT-DPEADEILSKRGV 374 (408)
Q Consensus 310 ~~~~~~~~i~~-~el--l~~~~DIliPaA~~~-~I~~~na~---------~i-~akiIvEgAN~p~-T~eA~~iL~~rGI 374 (408)
.....++. +++ .-.++|++|-|..-+ .++.+... ++ +..++.+....|. |+ --+.-+++|.
T Consensus 173 ---~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~-ll~~A~~~G~ 248 (282)
T TIGR01809 173 ---GVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTP-LVAIVSAAGW 248 (282)
T ss_pred ---CcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCH-HHHHHHHCCC
Confidence 00011111 121 114689999987533 33333221 11 3468889988885 54 5555677888
Q ss_pred eEEc
Q 015361 375 TILP 378 (408)
Q Consensus 375 ~vvP 378 (408)
.++.
T Consensus 249 ~~~~ 252 (282)
T TIGR01809 249 RVIS 252 (282)
T ss_pred EEEC
Confidence 7763
No 84
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.57 E-value=0.08 Score=53.00 Aligned_cols=108 Identities=21% Similarity=0.326 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec
Q 015361 239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM 318 (408)
Q Consensus 239 ~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i 318 (408)
++.+....+. +.+++|+|.|.|.+|+.+++.|...|++.|.++|.+ .+...+..++.+. ..+
T Consensus 166 v~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------~~ra~~la~~~g~-------~~~ 227 (311)
T cd05213 166 VELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------YERAEELAKELGG-------NAV 227 (311)
T ss_pred HHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHHcCC-------eEE
Confidence 4443333343 789999999999999999999998887767687764 3444444444322 111
Q ss_pred CCCCcc--cccccEEeeccCCCcc---cccccccc--ccEEEEecCCCC-CCHH
Q 015361 319 EPSELL--AHECDVLIPCALGGVL---KRENAADV--KAKFIIEAANHP-TDPE 364 (408)
Q Consensus 319 ~~~ell--~~~~DIliPaA~~~~I---~~~na~~i--~akiIvEgAN~p-~T~e 364 (408)
+.+++. -.++||+|-|...... -..-.... +-++|++-||-+ +.|+
T Consensus 228 ~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 228 PLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred eHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 111221 1368999999765443 11111111 346899999744 5553
No 85
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.49 E-value=0.027 Score=58.76 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=64.5
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCC
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~ 308 (408)
..||.+++.+ +++..+..+.|++|+|.|+|++|+.+|+.+...|++|+ |.|.+ .....+... .
T Consensus 175 yg~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~d----------p~r~~~A~~-~-- 237 (406)
T TIGR00936 175 YGTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEVD----------PIRALEAAM-D-- 237 (406)
T ss_pred cccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeCC----------hhhHHHHHh-c--
Confidence 4566555433 44445677899999999999999999999999999987 45543 111111111 1
Q ss_pred cccCCCCeecCCCCcccccccEEeeccC-CCccccccccccc-cEEEEecCCCC
Q 015361 309 LKDFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVK-AKFIIEAANHP 360 (408)
Q Consensus 309 l~~~~~~~~i~~~ell~~~~DIliPaA~-~~~I~~~na~~i~-akiIvEgAN~p 360 (408)
+....+.++.+ ..+|++|.|.- .+.|+.+....++ -.+++-.+-.+
T Consensus 238 -----G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 238 -----GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred -----CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 11222223433 46899998753 3345554444442 23444444443
No 86
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.35 E-value=0.26 Score=53.14 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHH------hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHh
Q 015361 231 TGRGVVYATEALLAE------HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD 304 (408)
Q Consensus 231 Tg~Gv~~~~~~~l~~------~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~ 304 (408)
-++|...++++.++. .+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.+.+ .++..+..+
T Consensus 352 D~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR~----------~e~a~~la~ 420 (529)
T PLN02520 352 DYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANRT----------YERAKELAD 420 (529)
T ss_pred cHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHH
Confidence 467888888764432 2456889999999999999999999999999876 66653 334433333
Q ss_pred hcC-CcccCCCCeecCCCCcccccccEEeeccCCCcccccc-----cccc-ccEEEEecCCCCC-CHHHHHHHHhCCCeE
Q 015361 305 KTG-SLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKREN-----AADV-KAKFIIEAANHPT-DPEADEILSKRGVTI 376 (408)
Q Consensus 305 ~~g-~l~~~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~n-----a~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~v 376 (408)
+-+ ....+. +..+.+..++||+|.|+.-+.-...+ ...+ ...++.+-.-.|. |+ --+..+++|..+
T Consensus 421 ~l~~~~~~~~-----~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~ 494 (529)
T PLN02520 421 AVGGQALTLA-----DLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITR-LLREAEESGAII 494 (529)
T ss_pred HhCCceeeHh-----HhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCH-HHHHHHHCCCeE
Confidence 211 111110 01122334689999776433321111 1112 3468999999985 54 455566788777
Q ss_pred Ec
Q 015361 377 LP 378 (408)
Q Consensus 377 vP 378 (408)
+.
T Consensus 495 ~~ 496 (529)
T PLN02520 495 VS 496 (529)
T ss_pred eC
Confidence 54
No 87
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.33 E-value=0.094 Score=56.42 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.0
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
|.++.|++|.|.|+|++|+.+|+.|...|++|++.
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~ 167 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY 167 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 45689999999999999999999999999999854
No 88
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.29 E-value=0.44 Score=47.53 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc
Q 015361 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~ 311 (408)
|+|+..++++.- .+.+.+|++++|.|.|-.++.++..|.+.|++=|.|.+.+- =-.++|.+...+.+.
T Consensus 108 ~~G~~~~L~~~~--~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~-------~ra~~La~~~~~~~~--- 175 (283)
T COG0169 108 GIGFLRALKEFG--LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR-------ERAEELADLFGELGA--- 175 (283)
T ss_pred HHHHHHHHHhcC--CCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH-------HHHHHHHHHhhhccc---
Confidence 556655544321 22567899999999999999999999999975444777641 012233333332221
Q ss_pred CCCCeecCCCCcccc-cccEEeeccCCCccccc-----ccccc-ccEEEEecCCCCC-CHHHHHHHHhCCCeEE
Q 015361 312 FDGGDSMEPSELLAH-ECDVLIPCALGGVLKRE-----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTIL 377 (408)
Q Consensus 312 ~~~~~~i~~~ell~~-~~DIliPaA~~~~I~~~-----na~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~vv 377 (408)
+... ....++-.. ++|++|-|..-+.-..+ +...+ +..++.+--..|. || --+.-+++|..++
T Consensus 176 ~~~~--~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tp-lL~~A~~~G~~~i 246 (283)
T COG0169 176 AVEA--AALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETP-LLREARAQGAKTI 246 (283)
T ss_pred cccc--ccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCH-HHHHHHHcCCeEE
Confidence 0001 111122222 79999998754433221 12222 6789999999995 66 5566678887754
No 89
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.15 E-value=0.13 Score=53.01 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=30.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+.+.+|+|.|.|.+|+.+++.|...|++|+ +.|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEECC
Confidence 567889999999999999999999999866 56653
No 90
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.09 E-value=0.07 Score=48.89 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-..|..|++.. +++.+.+++|++|+|.|-+ .||+.++.+|.++|+.|. +++++
T Consensus 16 ~PcTp~aii~l----L~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~ 69 (160)
T PF02882_consen 16 VPCTPLAIIEL----LEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSK 69 (160)
T ss_dssp --HHHHHHHHH----HHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TT
T ss_pred cCCCHHHHHHH----HHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCC
Confidence 46788887655 4567889999999999976 599999999999999997 66664
No 91
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.08 E-value=0.017 Score=50.98 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=42.6
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccEE
Q 015361 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVL 331 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DIl 331 (408)
-.||.|+|.|+||.++++.|.+.|+.|++|...+ .+...+.... ++.....+.++++ .++|++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs----------~~sa~~a~~~------~~~~~~~~~~~~~-~~aDlv 72 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRS----------PASAERAAAF------IGAGAILDLEEIL-RDADLV 72 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH----------H-HHHHHHC--------TT-----TTGGG-CC-SEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC----------cccccccccc------ccccccccccccc-ccCCEE
Confidence 4689999999999999999999999999886643 1111111111 1222233444554 379999
Q ss_pred eeccCCCccc
Q 015361 332 IPCALGGVLK 341 (408)
Q Consensus 332 iPaA~~~~I~ 341 (408)
+-|..-+.|.
T Consensus 73 ~iavpDdaI~ 82 (127)
T PF10727_consen 73 FIAVPDDAIA 82 (127)
T ss_dssp EE-S-CCHHH
T ss_pred EEEechHHHH
Confidence 9986655553
No 92
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.07 E-value=0.1 Score=53.27 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCC
Q 015361 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG 314 (408)
Q Consensus 235 v~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~ 314 (408)
+.+++..+++.. .++++++|.|+|.|.+|+-+++.|.++|++-+.|+..+-.. ++.+.+.
T Consensus 158 v~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~~-------------- 217 (338)
T PRK00676 158 IESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTVV-------------- 217 (338)
T ss_pred HHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhhh--------------
Confidence 444444455554 46999999999999999999999999997766688876411 1111100
Q ss_pred CeecCCCCcccccccEEeec-----cCCCccccccccccccEEEEecCCCC
Q 015361 315 GDSMEPSELLAHECDVLIPC-----ALGGVLKRENAADVKAKFIIEAANHP 360 (408)
Q Consensus 315 ~~~i~~~ell~~~~DIliPa-----A~~~~I~~~na~~i~akiIvEgAN~p 360 (408)
.+.+ + +..++||+|-| +....|+.+......-+++++-|+-.
T Consensus 218 ~~~~---~-~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 218 REEL---S-FQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred hhhh---h-cccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence 0000 1 12478999964 45567777776665557899988754
No 93
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.01 E-value=0.064 Score=53.90 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-..|.+|++. ++++.|.+++|++|+|.|-| .||+.+|.+|.++|+.|+ +.+++
T Consensus 139 ~PcTp~aii~----lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~ 192 (301)
T PRK14194 139 TPCTPSGCLR----LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSR 192 (301)
T ss_pred CCCcHHHHHH----HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCC
Confidence 3578888765 45567899999999999995 999999999999999998 55543
No 94
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.00 E-value=0.23 Score=50.47 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=27.6
Q ss_pred eEEEEccChHHHHHHHHHHHCC----CEEEEeecC
Q 015361 254 TFVIQGFGNVGSWAARLIHERG----GKVIAVSDI 284 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~G----akVVaVsD~ 284 (408)
||+|.|||.+|+.+++.|.+.+ +.|++|.|.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~ 35 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL 35 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC
Confidence 5899999999999999998764 899999875
No 95
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.96 E-value=0.085 Score=56.74 Aligned_cols=35 Identities=37% Similarity=0.431 Sum_probs=31.8
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
|.++.|++|.|.|+|++|+.+|+.|...|++|++.
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~ 169 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY 169 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 44689999999999999999999999999999854
No 96
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.84 E-value=0.07 Score=53.22 Aligned_cols=53 Identities=26% Similarity=0.250 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~ 285 (408)
..+|..|++.. +++.+.+++|++|+|.|-++ ||+.++.+|.++++.|+ +++++
T Consensus 139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~ 192 (285)
T PRK10792 139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRF 192 (285)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECC
Confidence 46888887654 55678999999999999988 99999999999999886 66653
No 97
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=94.84 E-value=0.11 Score=51.45 Aligned_cols=105 Identities=20% Similarity=0.315 Sum_probs=65.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccccccEE
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL 331 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~DIl 331 (408)
++|.|+|.|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. + .... ++.+. ..+||++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d~~----------~~~~~~~~~~-g-------~~~~~s~~~~-~~~aDvV 61 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQ-VFDVN----------PQAVDALVDK-G-------ATPAASPAQA-AAGAEFV 61 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHc-C-------CcccCCHHHH-HhcCCEE
Confidence 379999999999999999999999875 44542 2333333322 1 1111 22233 3478999
Q ss_pred eeccCCCc-----ccccc--cccc-ccEEEEecCCCCC--CHHHHHHHHhCCCeEE
Q 015361 332 IPCALGGV-----LKREN--AADV-KAKFIIEAANHPT--DPEADEILSKRGVTIL 377 (408)
Q Consensus 332 iPaA~~~~-----I~~~n--a~~i-~akiIvEgAN~p~--T~eA~~iL~~rGI~vv 377 (408)
+-|-.... +...+ .+.+ +-++|++-+..+. +.+..+.+.++|+.++
T Consensus 62 i~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 62 ITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred EEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 98865443 11111 1122 3467777777753 4566678899998876
No 98
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.82 E-value=0.078 Score=56.34 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=67.1
Q ss_pred EEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhc--C-CcccCCCCeecCCCCccc--cccc
Q 015361 255 FVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT--G-SLKDFDGGDSMEPSELLA--HECD 329 (408)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~--g-~l~~~~~~~~i~~~ell~--~~~D 329 (408)
|.|+|.|++|+++|+-|.+.|++|+ +.|.+ .+++.+..++. + .+..+ -+.+++.. .+||
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~drt----------~~~~~~l~~~~~~g~~~~~~-----~s~~e~v~~l~~~d 65 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVS-VYNRT----------PEKTDEFLAEHAKGKKIVGA-----YSIEEFVQSLERPR 65 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEE-EEeCC----------HHHHHHHHhhccCCCCceec-----CCHHHHHhhcCCCC
Confidence 7899999999999999999999876 44543 34444444331 1 11111 12233332 2588
Q ss_pred EEeeccCCCccccccc----ccc-ccEEEEecCCCC--CCHHHHHHHHhCCCeEE
Q 015361 330 VLIPCALGGVLKRENA----ADV-KAKFIIEAANHP--TDPEADEILSKRGVTIL 377 (408)
Q Consensus 330 IliPaA~~~~I~~~na----~~i-~akiIvEgAN~p--~T~eA~~iL~~rGI~vv 377 (408)
+++-|...+....+.. +.+ .-++|+++.|.- .|.+..+.++++|+.++
T Consensus 66 vIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fv 120 (467)
T TIGR00873 66 KIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV 120 (467)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEE
Confidence 8877755543333222 223 347999999953 35556677999999987
No 99
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.79 E-value=0.12 Score=52.41 Aligned_cols=108 Identities=24% Similarity=0.281 Sum_probs=63.7
Q ss_pred hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccc
Q 015361 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA 325 (408)
Q Consensus 246 ~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~ 325 (408)
.|.++.|+|+.|.|+|.+|+.+|+.+.-.|.+|+. .| +... .+... .. +.+.++.++++
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y-~~-------~~~~-~~~~~-----~~------~~~y~~l~ell- 198 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLY-YD-------RSPN-PEAEK-----EL------GARYVDLDELL- 198 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEE-EC-------CCCC-hHHHh-----hc------CceeccHHHHH-
Confidence 45679999999999999999999999988999983 33 3332 11000 00 12233334444
Q ss_pred ccccEEeeccC-----CCccccccccccc-cEEEEecCCCCC-CHHH-HHHHHhCCC
Q 015361 326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGV 374 (408)
Q Consensus 326 ~~~DIliPaA~-----~~~I~~~na~~i~-akiIvEgAN~p~-T~eA-~~iL~~rGI 374 (408)
..+|+++-... .+.||.+-..+++ --+++.-|=+++ ..+| .+.|++.-|
T Consensus 199 ~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i 255 (324)
T COG1052 199 AESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKI 255 (324)
T ss_pred HhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCc
Confidence 35677765442 2334444444443 257777777775 3222 356655544
No 100
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.78 E-value=0.085 Score=51.70 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=60.6
Q ss_pred CeEEEEccChHHHHHHHHHHHC-CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecC-CCCcccccccE
Q 015361 253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME-PSELLAHECDV 330 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~-~~ell~~~~DI 330 (408)
+||+|.|+|++|+..++.|.+. +..+++|++.... .++..+.... +....+ .+++ ..++|+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~--------~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv 64 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS--------IDAVRRALGE--------AVRVVSSVDAL-PQRPDL 64 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC--------HHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence 5899999999999999988765 6888888754311 1111111100 111122 2344 667999
Q ss_pred EeeccCCCcccccccccc---ccEEEEecC--C-CC-CCHHHHHHHHhCCCeEE
Q 015361 331 LIPCALGGVLKRENAADV---KAKFIIEAA--N-HP-TDPEADEILSKRGVTIL 377 (408)
Q Consensus 331 liPaA~~~~I~~~na~~i---~akiIvEgA--N-~p-~T~eA~~iL~~rGI~vv 377 (408)
++.|+..... .+.+.+. ++.+++|-. = -+ +-++-.+..+++|+.+.
T Consensus 65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 65 VVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence 9999875533 4444432 456776521 1 01 11223345667786543
No 101
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.78 E-value=0.076 Score=53.03 Aligned_cols=52 Identities=35% Similarity=0.428 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGn-VG~~~a~~L~~~GakVVaVsD~ 284 (408)
..+|.+|++.. ++..+.+++|++|+|.|-++ ||+.++.+|..+|+.|+ ++++
T Consensus 144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs 196 (287)
T PRK14176 144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHV 196 (287)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEec
Confidence 46888887654 55678999999999999988 99999999999999886 6665
No 102
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.77 E-value=0.11 Score=51.02 Aligned_cols=105 Identities=13% Similarity=0.162 Sum_probs=62.8
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccccccEEe
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLI 332 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~DIli 332 (408)
+|.|.|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+. +. ... +..+.+ .+||+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g~-------~~~~~~~~~~-~~aDivi 60 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTIG----------PEVADELLAA-GA-------VTAETARQVT-EQADVIF 60 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-CC-------cccCCHHHHH-hcCCEEE
Confidence 58999999999999999999999987 44443 2333332221 21 111 222333 4799999
Q ss_pred eccCCCcccccc-------cccc-ccEEEEecCCCCC--CHHHHHHHHhCCCeEEc
Q 015361 333 PCALGGVLKREN-------AADV-KAKFIIEAANHPT--DPEADEILSKRGVTILP 378 (408)
Q Consensus 333 PaA~~~~I~~~n-------a~~i-~akiIvEgAN~p~--T~eA~~iL~~rGI~vvP 378 (408)
-|.......... ...+ .-++|+.-.+... +.+..+.++++|+.++-
T Consensus 61 ~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred EecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 986543221111 1122 3467887666542 23455678889987764
No 103
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.70 E-value=0.1 Score=56.00 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=30.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
..+.+|+|.|.|.+|..++..+...|++|+ +.|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 468999999999999999999999999766 66764
No 104
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.11 Score=50.94 Aligned_cols=116 Identities=19% Similarity=0.345 Sum_probs=73.7
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc---cc--c
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL---AH--E 327 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell---~~--~ 327 (408)
+++-++|.|.+|.++++.|.+.|..||+ -|. |.+++.+.+... ... + .+.++++ .. -
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~-yD~----------n~~av~~~~~~g--a~~---a--~sl~el~~~L~~pr~ 62 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVG-YDV----------NQTAVEELKDEG--ATG---A--ASLDELVAKLSAPRI 62 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEE-EcC----------CHHHHHHHHhcC--Ccc---c--cCHHHHHHhcCCCcE
Confidence 3577899999999999999999999994 343 345555554432 111 0 0112221 11 2
Q ss_pred ccEEeecc-CCCccccccccccc-cEEEEecCCCCC--CHHHHHHHHhCCCeEEcchhcccccch
Q 015361 328 CDVLIPCA-LGGVLKRENAADVK-AKFIIEAANHPT--DPEADEILSKRGVTILPDIYANSGGVT 388 (408)
Q Consensus 328 ~DIliPaA-~~~~I~~~na~~i~-akiIvEgAN~p~--T~eA~~iL~~rGI~vvPD~laNaGGVi 388 (408)
+=+.+|++ +.+.+-.+-++.+. --+|++|.|.-. +.+-.+.|+++||.++- .--+||+.
T Consensus 63 vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~ 125 (300)
T COG1023 63 VWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVW 125 (300)
T ss_pred EEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCch
Confidence 34688886 43333344445553 479999999986 34444679999999983 45677773
No 105
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.53 E-value=0.13 Score=51.01 Aligned_cols=105 Identities=17% Similarity=0.252 Sum_probs=64.8
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccc--cccE
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH--ECDV 330 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~--~~DI 330 (408)
+|.|+|+|++|+..|+.|.+.|.+|+ +.|.+ .+.+.+..+ .+ .... +.+++... .+|+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~-~g-------~~~~~s~~~~~~~~~~adv 62 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYDVN----------QEAVDVAGK-LG-------ITARHSLEELVSKLEAPRT 62 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHHH-CC-------CeecCCHHHHHHhCCCCCE
Confidence 79999999999999999999999887 55653 233333322 12 1111 23344432 2788
Q ss_pred EeeccCCCccccccc----ccc-ccEEEEecCCC-C-CCHHHHHHHHhCCCeEE
Q 015361 331 LIPCALGGVLKRENA----ADV-KAKFIIEAANH-P-TDPEADEILSKRGVTIL 377 (408)
Q Consensus 331 liPaA~~~~I~~~na----~~i-~akiIvEgAN~-p-~T~eA~~iL~~rGI~vv 377 (408)
++-|-......++-. +.+ +-++|++-++. | .+.+..+.+.++|+.++
T Consensus 63 Vi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 63 IWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred EEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 887755442222211 223 23588888776 4 34566678889999876
No 106
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.51 E-value=0.095 Score=52.32 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChH-HHHHHHHHHHCCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNV-GSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnV-G~~~a~~L~~~GakVVaVsD~ 284 (408)
-..|.+|++. ++++.+.+++|++|+|.|-|++ |+.++.+|.++|+.|+ ++++
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs 190 (285)
T PRK14189 138 RPCTPYGVMK----MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS 190 (285)
T ss_pred cCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence 4578877754 5567899999999999998877 9999999999999987 4443
No 107
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=94.49 E-value=0.079 Score=53.97 Aligned_cols=91 Identities=14% Similarity=0.242 Sum_probs=54.4
Q ss_pred EEEEccChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhc--CCcccCCC-------Ce-ec--CCC
Q 015361 255 FVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT--GSLKDFDG-------GD-SM--EPS 321 (408)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~--g~l~~~~~-------~~-~i--~~~ 321 (408)
|+|.|||.+|+.+++.+.+ .+.++|||+|.+ .+......... .+...++. .. .+ +.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~----------~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~e 70 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTS----------PDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLE 70 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCC----------hHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHH
Confidence 6899999999999998764 579999999953 23221211111 11111111 00 11 234
Q ss_pred CcccccccEEeeccCCCccccccccc---cccEEEEecC
Q 015361 322 ELLAHECDVLIPCALGGVLKRENAAD---VKAKFIIEAA 357 (408)
Q Consensus 322 ell~~~~DIliPaA~~~~I~~~na~~---i~akiIvEgA 357 (408)
+++ .++|++++|+ +...+..|+.. .++|.|.-||
T Consensus 71 eLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 71 DLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred HHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEECC
Confidence 555 4799999995 55566667665 3666666554
No 108
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.46 E-value=0.1 Score=50.56 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=50.3
Q ss_pred CeEEEEccChHHHHHHHHHHH--CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccE
Q 015361 253 LTFVIQGFGNVGSWAARLIHE--RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DI 330 (408)
.+|.|+|+|++|..+.+++.+ ..++.++|.|.+ .++.++..+..+. ....+-++++ .+.|+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~----------~ek~~~~~~~~~~------~~~s~ide~~-~~~Dl 63 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD----------EEKAKELEASVGR------RCVSDIDELI-AEVDL 63 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC----------HHHHHHHHhhcCC------CccccHHHHh-hccce
Confidence 368999999999999998874 359999998875 3444443332211 1112335666 78999
Q ss_pred EeeccCCCcccc
Q 015361 331 LIPCALGGVLKR 342 (408)
Q Consensus 331 liPaA~~~~I~~ 342 (408)
+++||..+.+-+
T Consensus 64 vVEaAS~~Av~e 75 (255)
T COG1712 64 VVEAASPEAVRE 75 (255)
T ss_pred eeeeCCHHHHHH
Confidence 999998776543
No 109
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=94.45 E-value=0.47 Score=48.47 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHHC----CCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER----GGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~----GakVVaVsD~ 284 (408)
.||+|.|||-+|+.+.+.|.+. ..++|+|-|.
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~ 37 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL 37 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 4899999999999999999874 5889998764
No 110
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.44 E-value=1.1 Score=44.59 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc
Q 015361 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~ 311 (408)
+.|.+.+++ ..+.+++++++.|.|.|..++.++-.|...|++-|.|.+.+-. ..++..+..++-+. .
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~-------~~~ka~~la~~~~~--~ 174 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE-------FFDKALAFAQRVNE--N 174 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc-------HHHHHHHHHHHhhh--c
Confidence 567666665 4577889999999999999999999898999877768776421 12233222221110 0
Q ss_pred CCC-CeecCCCC---cc--cccccEEeeccCCCcccccc------cccc-ccEEEEecCCCCC-CHHHHHHHHhCCCeEE
Q 015361 312 FDG-GDSMEPSE---LL--AHECDVLIPCALGGVLKREN------AADV-KAKFIIEAANHPT-DPEADEILSKRGVTIL 377 (408)
Q Consensus 312 ~~~-~~~i~~~e---ll--~~~~DIliPaA~~~~I~~~n------a~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~vv 377 (408)
+.. ....+.++ +. ..++||+|-|..-+.-...+ ...+ ...+|.+-...|. |+ --+.-+++|..++
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~~ 253 (288)
T PRK12749 175 TDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTK-LLQQAQQAGCKTI 253 (288)
T ss_pred cCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCH-HHHHHHHCCCeEE
Confidence 100 01111111 11 13689999987543321111 1112 2457889998885 54 5566678888876
Q ss_pred cc
Q 015361 378 PD 379 (408)
Q Consensus 378 PD 379 (408)
+.
T Consensus 254 ~G 255 (288)
T PRK12749 254 DG 255 (288)
T ss_pred CC
Confidence 43
No 111
>PLN02928 oxidoreductase family protein
Probab=94.43 E-value=0.06 Score=54.96 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+.++.|+|+.|.|+|++|+.+|+.|...|++|++. |.
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~-dr 190 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT-RR 190 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CC
Confidence 34699999999999999999999999999999854 44
No 112
>PRK08223 hypothetical protein; Validated
Probab=94.41 E-value=0.11 Score=51.89 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=32.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+..+|+|.|.|-+|+.+++.|...|..-+.+.|.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 678899999999999999999999998877788865
No 113
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.41 E-value=0.29 Score=52.63 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=30.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
..+.||+|.|+|.+|..+++.+...|++|+ +.|.+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~ 196 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTR 196 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 457899999999999999999999999966 56664
No 114
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.39 E-value=0.11 Score=55.61 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=69.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhh---cCCcccCCCCeecCCCCcccc--c
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK---TGSLKDFDGGDSMEPSELLAH--E 327 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~---~g~l~~~~~~~~i~~~ell~~--~ 327 (408)
.+|.++|.|++|+.+|+-|.+.|++|+ |-|.+ .++..+..++ .|. ..+.. .-+.+++.+. .
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~NRt----------~~k~~~l~~~~~~~Ga-~~~~~--a~s~~e~v~~l~~ 72 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGN-LPLYG--FKDPEDFVLSIQK 72 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhhhcCC-ccccc--CCCHHHHHhcCCC
Confidence 479999999999999999999999987 65653 3333333321 121 00000 0123444432 5
Q ss_pred ccEEeeccCCCcccccc----cccc-ccEEEEecCCCC--CCHHHHHHHHhCCCeEE
Q 015361 328 CDVLIPCALGGVLKREN----AADV-KAKFIIEAANHP--TDPEADEILSKRGVTIL 377 (408)
Q Consensus 328 ~DIliPaA~~~~I~~~n----a~~i-~akiIvEgAN~p--~T~eA~~iL~~rGI~vv 377 (408)
||+++-|-.......+. .+.+ .-++|+++.|.. .|.+..+.++++|+.++
T Consensus 73 ~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 73 PRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 88888775433222211 2223 457999999995 46666788999999987
No 115
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.37 E-value=0.82 Score=45.34 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhc-CCcc
Q 015361 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT-GSLK 310 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~-g~l~ 310 (408)
+.|...+++ ..+.+++++++.|.|.|.+|+.++..|.+.|++-|.|.+.+-.-+ + ..+++.+...+. ..+.
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~--~--~a~~l~~~l~~~~~~~~ 181 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFY--E--RAEQTAEKIKQEVPECI 181 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHH--H--HHHHHHHHHhhcCCCce
Confidence 566666654 345678899999999999999999999999998555766541000 0 122232222111 1100
Q ss_pred cCCCCeecCCC-Ccc--cccccEEeeccCCCccccc------ccccc-ccEEEEecCCCCC-CHHHHHHHHhCCCeEEc
Q 015361 311 DFDGGDSMEPS-ELL--AHECDVLIPCALGGVLKRE------NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP 378 (408)
Q Consensus 311 ~~~~~~~i~~~-ell--~~~~DIliPaA~~~~I~~~------na~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~vvP 378 (408)
.. ...++.. ++- -..+|++|-|..-+.-... ....+ +-.+|.+-...|. |+ --+.-+++|..++.
T Consensus 182 -~~-~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~~~ 257 (289)
T PRK12548 182 -VN-VYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTK-LLEDAEAAGCKTVG 257 (289)
T ss_pred -eE-EechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCH-HHHHHHHCCCeeeC
Confidence 00 0011111 111 1357999988753322111 11122 3468999999885 54 55566788887753
No 116
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.35 E-value=0.56 Score=49.30 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.9
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~ 285 (408)
.||+|-|||.+|+.+++.+.+ .+.+||+|-|..
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~ 119 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF 119 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 499999999999999999875 689999987753
No 117
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.34 E-value=0.1 Score=54.20 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=75.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCC-CEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC------CCccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP------SELLA 325 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~------~ell~ 325 (408)
++|+|.|.|+||+.+|..|++.| .+|. |+|.+ .+++.+.....+. .. .+..++- .++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs----------~~~~~~i~~~~~~--~v-~~~~vD~~d~~al~~li~ 67 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRS----------KEKCARIAELIGG--KV-EALQVDAADVDALVALIK 67 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEeCC----------HHHHHHHHhhccc--cc-eeEEecccChHHHHHHHh
Confidence 58999999999999999999999 7776 78875 3445554443211 00 0111221 13343
Q ss_pred ccccEEeeccCCCccccccccc-cccE-EEEecCCCCC-CHHHHHHHHhCCCeEEcchhcccccchhhHHHHHh
Q 015361 326 HECDVLIPCALGGVLKRENAAD-VKAK-FIIEAANHPT-DPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396 (408)
Q Consensus 326 ~~~DIliPaA~~~~I~~~na~~-i~ak-iIvEgAN~p~-T~eA~~iL~~rGI~vvPD~laNaGGVivSy~Ew~q 396 (408)
+.|+.|-|+...+ +..-++. ++++ -++.-+|..- .-+-++...+.|+.++|+. --+=|++..|.....
T Consensus 68 -~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a~ 138 (389)
T COG1748 68 -DFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYAA 138 (389)
T ss_pred -cCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHHH
Confidence 4499999976553 3221111 2221 2445555543 3455678899999999876 333466666655543
No 118
>PRK08328 hypothetical protein; Provisional
Probab=94.23 E-value=0.044 Score=52.71 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=31.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+++.+|+|.|.|-+|+.+++.|...|..-+.+.|.+
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 677899999999999999999999998777777754
No 119
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.15 E-value=0.15 Score=48.37 Aligned_cols=140 Identities=22% Similarity=0.205 Sum_probs=83.6
Q ss_pred CChhHHHHHHHHHHHH-----HHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHH
Q 015361 228 EAATGRGVVYATEALL-----AEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA 301 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l-----~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~ 301 (408)
-..|.+|++.-++..= +..|.+++|++|+|+| ...||+-++.+|.++|+.|. ++|++|..+-..+-
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~~~~------- 104 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFTRGE------- 104 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCccccccccc-------
Confidence 3689999877665320 0114489999999999 47799999999999999998 89988865532221
Q ss_pred hHhhcCCcccCCCCeecCC-C-Ccc--cccccEEeeccC-CCc-cccccccccccEEEEecCCCCCCHHHHHHHHhCCCe
Q 015361 302 HKDKTGSLKDFDGGDSMEP-S-ELL--AHECDVLIPCAL-GGV-LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVT 375 (408)
Q Consensus 302 ~~~~~g~l~~~~~~~~i~~-~-ell--~~~~DIliPaA~-~~~-I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~ 375 (408)
++.. ..+...+ + .+. ...+||+|=|.. .+. |+.+..+. +|-+|==|-|.-+. +.+ .++--.
T Consensus 105 ------~~~h--s~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~-GavVIDVGi~~dvd---~~v-~~~as~ 171 (197)
T cd01079 105 ------SIRH--EKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKD-GAICINFASIKNFE---PSV-KEKASI 171 (197)
T ss_pred ------cccc--ccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCC-CcEEEEcCCCcCcc---HhH-HhhcCE
Confidence 1100 0000001 1 122 347899998875 444 67665553 23344344443222 222 333335
Q ss_pred EEcchhcccccchhhHH
Q 015361 376 ILPDIYANSGGVTVSYF 392 (408)
Q Consensus 376 vvPD~laNaGGVivSy~ 392 (408)
+.|= -|.++++.+
T Consensus 172 iTPv----VGpvTva~L 184 (197)
T cd01079 172 YVPS----IGKVTIAML 184 (197)
T ss_pred eCCC----cCHHHHHHH
Confidence 6772 888888765
No 120
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.14 E-value=0.056 Score=45.34 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+++|++|.|.|.|+||..-++.|.+.|++|+-++..
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3689999999999999999999999999999866554
No 121
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.14 E-value=0.25 Score=44.81 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=29.2
Q ss_pred CeEEEEccChHHHHHHHHHH-HCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~ 285 (408)
.||+|-|||-+|+.+++.+. +....||+|.|..
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 37999999999999999987 4569999998875
No 122
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.15 Score=51.26 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeec
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (408)
..+|.+|++. ++++.+.+++|++|+|.| .|.||..+|.+|.+.|+.|+ +++
T Consensus 138 ~PcTp~ai~~----ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~ 189 (296)
T PRK14188 138 VPCTPLGCMM----LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAH 189 (296)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EEC
Confidence 4688888765 455678899999999999 99999999999999999998 554
No 123
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.07 E-value=0.15 Score=50.87 Aligned_cols=52 Identities=35% Similarity=0.326 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfG-nVG~~~a~~L~~~GakVVaVsD~ 284 (408)
-.+|..|++. ++++.+.+++|++|+|.|-| .||..+|.+|.++|+.|. ++++
T Consensus 137 ~PcTp~avi~----lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs 189 (285)
T PRK14191 137 VPATPMGVMR----LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHI 189 (285)
T ss_pred CCCcHHHHHH----HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeC
Confidence 4688888765 45567899999999999988 999999999999999986 6654
No 124
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.01 E-value=0.26 Score=48.43 Aligned_cols=105 Identities=16% Similarity=0.282 Sum_probs=62.7
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccccccEE
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL 331 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~DIl 331 (408)
++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+. + .... +.++++ .+||++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~~----------~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v 62 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDRN----------PEAVAEVIAA-G-------AETASTAKAVA-EQCDVI 62 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence 589999999999999999999999886 44443 2222222221 1 1111 223333 479999
Q ss_pred eeccCCCccccc-------ccccc-ccEEEEecCCCCC--CHHHHHHHHhCCCeEE
Q 015361 332 IPCALGGVLKRE-------NAADV-KAKFIIEAANHPT--DPEADEILSKRGVTIL 377 (408)
Q Consensus 332 iPaA~~~~I~~~-------na~~i-~akiIvEgAN~p~--T~eA~~iL~~rGI~vv 377 (408)
+-|......... -.+.+ .-++|+.-.+... +.+..+.+.++|+.++
T Consensus 63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~ 118 (296)
T PRK11559 63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEML 118 (296)
T ss_pred EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 998654332111 12222 2367887666542 2345567778898764
No 125
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.00 E-value=0.35 Score=50.70 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCC
Q 015361 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG 314 (408)
Q Consensus 235 v~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~ 314 (408)
|.++.-++.+..-.++.+++|.|.|.|.+|+.+++.|.++|++-+.|+..+ .+...++.++.+.
T Consensus 164 v~~~Av~la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------~~ra~~La~~~~~------ 227 (414)
T PRK13940 164 VAFSAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------IEKAQKITSAFRN------ 227 (414)
T ss_pred HHHHHHHHHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHhcC------
Confidence 333333444433345899999999999999999999999998777788775 2333333333211
Q ss_pred CeecCCCCcc--cccccEEeeccC--CCccccccccccccEEEEecCCCC-CCH
Q 015361 315 GDSMEPSELL--AHECDVLIPCAL--GGVLKRENAADVKAKFIIEAANHP-TDP 363 (408)
Q Consensus 315 ~~~i~~~ell--~~~~DIliPaA~--~~~I~~~na~~i~akiIvEgAN~p-~T~ 363 (408)
...++-+++. -.++||+|-|.. ..+|+.+.... +-.++++-|+-. +.|
T Consensus 228 ~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPRdidp 280 (414)
T PRK13940 228 ASAHYLSELPQLIKKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQALDP 280 (414)
T ss_pred CeEecHHHHHHHhccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCCCCCc
Confidence 1122212221 236899999874 33566544322 335777877653 444
No 126
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.93 E-value=0.095 Score=52.76 Aligned_cols=35 Identities=29% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEee
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (408)
.+++|+||.|.|+|++|+.+|+.|...|++|+++.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~ 166 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS 166 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999999999999998653
No 127
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.89 E-value=0.26 Score=47.08 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=54.6
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccccc
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~ 327 (408)
.+++|++|+|.|.|.||..=+++|.+.|++|+-+|+.- .+++....++.+ +.-.. +..+.+++- +
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~----------~~el~~~~~~~~-i~~~~--~~~~~~~~~--~ 72 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF----------EPELKALIEEGK-IKWIE--REFDAEDLD--D 72 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc----------cHHHHHHHHhcC-cchhh--cccChhhhc--C
Confidence 46899999999999999999999999999999887763 356666655543 21111 112222222 3
Q ss_pred ccEEeeccCCCccccc
Q 015361 328 CDVLIPCALGGVLKRE 343 (408)
Q Consensus 328 ~DIliPaA~~~~I~~~ 343 (408)
+++.|-|.-...+|+.
T Consensus 73 ~~lviaAt~d~~ln~~ 88 (210)
T COG1648 73 AFLVIAATDDEELNER 88 (210)
T ss_pred ceEEEEeCCCHHHHHH
Confidence 8888887544455543
No 128
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.83 E-value=0.31 Score=50.91 Aligned_cols=100 Identities=19% Similarity=0.345 Sum_probs=61.8
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc--cc
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--AH 326 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell--~~ 326 (408)
++.+++|+|.|.|.+|+.+++.|...|+.-|.+.|.+ .+...+..++-+. ..++.+++. -.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs----------~~ra~~la~~~g~-------~~i~~~~l~~~l~ 239 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT----------YERAEDLAKELGG-------EAVKFEDLEEYLA 239 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHcCC-------eEeeHHHHHHHHh
Confidence 4889999999999999999999999995444466654 2333333333221 111111111 13
Q ss_pred cccEEeeccC--CCcccccccccc-----ccEEEEecCCCC-CCHHH
Q 015361 327 ECDVLIPCAL--GGVLKRENAADV-----KAKFIIEAANHP-TDPEA 365 (408)
Q Consensus 327 ~~DIliPaA~--~~~I~~~na~~i-----~akiIvEgAN~p-~T~eA 365 (408)
.+||+|-|.. ...++.+..... +..+|+.-|+-. +.|+.
T Consensus 240 ~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 240 EADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred hCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 7999999963 445666655442 234899999532 55543
No 129
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.77 E-value=0.1 Score=52.95 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
.++.|++|.|.|+|++|+.+|+.|...|.+|++.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~ 175 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAY 175 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4589999999999999999999999999999854
No 130
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.69 E-value=0.1 Score=54.47 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
+.+|.|+||.|.|+|++|+.+|+.+...|.+|++.
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~ 180 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFY 180 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 34689999999999999999999999999999964
No 131
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.66 E-value=0.046 Score=50.53 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=25.5
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+|+|.|.|.+|+..|..+...|++|+ +.|.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEEC
Confidence 68999999999999999999999998 5555
No 132
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.63 E-value=0.3 Score=50.99 Aligned_cols=97 Identities=18% Similarity=0.353 Sum_probs=62.1
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCC---Cccc
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPS---ELLA 325 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~---ell~ 325 (408)
++.+++|+|.|.|.+|+.+++.|...|++-|.+++.+ .+...+..++.+. ..++.+ +.+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~----------~~ra~~la~~~g~-------~~~~~~~~~~~l- 240 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT----------LERAEELAEEFGG-------EAIPLDELPEAL- 240 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC----------HHHHHHHHHHcCC-------cEeeHHHHHHHh-
Confidence 5889999999999999999999999998545566664 2344333333221 111111 222
Q ss_pred ccccEEeeccC--CCcccccccccc------ccEEEEecCCCC-CCH
Q 015361 326 HECDVLIPCAL--GGVLKRENAADV------KAKFIIEAANHP-TDP 363 (408)
Q Consensus 326 ~~~DIliPaA~--~~~I~~~na~~i------~akiIvEgAN~p-~T~ 363 (408)
.++|++|-|.. ...++.+..... +-.+++.-|+-. +.|
T Consensus 241 ~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 241 AEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred ccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence 37899999864 345666655432 346889998643 444
No 133
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.52 E-value=0.18 Score=50.28 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
-.+|..|+.. ++++.+.+++|++|+|.|- |.||..+|.+|.++|+.|+ ++.+
T Consensus 138 ~PcTp~avi~----lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s 190 (284)
T PRK14179 138 IPCTPAGIME----MFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHS 190 (284)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECC
Confidence 4688888754 5556799999999999998 9999999999999999987 4443
No 134
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=93.52 E-value=0.9 Score=46.28 Aligned_cols=31 Identities=35% Similarity=0.635 Sum_probs=27.1
Q ss_pred eEEEEccChHHHHHHHHHHHC---CCEEEEeecC
Q 015361 254 TFVIQGFGNVGSWAARLIHER---GGKVIAVSDI 284 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 284 (408)
||+|-|||-+|+.+.+.+.+. ..+||+|-|.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~ 34 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL 34 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence 689999999999999998765 5899999774
No 135
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.48 E-value=0.18 Score=48.95 Aligned_cols=36 Identities=17% Similarity=0.430 Sum_probs=32.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+.++|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678899999999999999999999998767788865
No 136
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=93.48 E-value=0.91 Score=46.43 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=29.7
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEeecCCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITG 286 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G 286 (408)
.||+|.|||.+|+..++.+.+ .+.++|+|.|...
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~ 40 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI 40 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence 699999999999999998875 4799999988653
No 137
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.47 E-value=2 Score=42.64 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc
Q 015361 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~ 311 (408)
|+|...++++ .+.++++++++|.|.|-+|+.++-.|.+.|++-+.|.+.+ .++..+..++-. ..
T Consensus 111 ~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~ka~~La~~~~--~~ 174 (283)
T PRK14027 111 VSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------TSRAQALADVIN--NA 174 (283)
T ss_pred HHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHh--hc
Confidence 6677777753 3345778999999999999999999999998777787764 233333322200 01
Q ss_pred CCCC--eecCC---CCcccccccEEeeccCCCccccc----ccccc-ccEEEEecCCCCC-CHHHHHHHHhCCCeEEc
Q 015361 312 FDGG--DSMEP---SELLAHECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP 378 (408)
Q Consensus 312 ~~~~--~~i~~---~ell~~~~DIliPaA~~~~I~~~----na~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~vvP 378 (408)
++.. ...+. .+.+ .++|++|-|..-+.-..+ ....+ ...+|.+-...|. |+ --+.-+++|..++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~~~ 250 (283)
T PRK14027 175 VGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETE-LLKAARALGCETLD 250 (283)
T ss_pred cCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCH-HHHHHHHCCCEEEc
Confidence 1110 01111 1122 368999998753321111 11112 3468899998885 54 55667788887753
No 138
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=93.41 E-value=0.99 Score=46.05 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=27.9
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 284 (408)
.||+|-|||-+|+.+.|.+.+ ....||||-|.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~ 35 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL 35 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC
Confidence 489999999999999999764 46999999774
No 139
>PRK06141 ornithine cyclodeaminase; Validated
Probab=93.40 E-value=0.67 Score=46.49 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=71.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCccccc
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE 327 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~ 327 (408)
...++|+|.|.|.+|+..++.+.. ++.+-|.|.+.+ .+...++.++-... +. ..... +.++.+ .+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs----------~~~a~~~a~~~~~~-g~-~~~~~~~~~~av-~~ 189 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD----------PAKAEALAAELRAQ-GF-DAEVVTDLEAAV-RQ 189 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-ceEEeCCHHHHH-hc
Confidence 357899999999999999986654 565545466653 34444443331110 10 11121 122233 47
Q ss_pred ccEEeeccCCC--ccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcch
Q 015361 328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDI 380 (408)
Q Consensus 328 ~DIliPaA~~~--~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~ 380 (408)
|||++-|.... .++.+..+ -++-+.+=|++.|...|.+..+.+++..|+=|.
T Consensus 190 aDIVi~aT~s~~pvl~~~~l~-~g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~~ 243 (314)
T PRK06141 190 ADIISCATLSTEPLVRGEWLK-PGTHLDLVGNFTPDMRECDDEAIRRASVYVDTR 243 (314)
T ss_pred CCEEEEeeCCCCCEecHHHcC-CCCEEEeeCCCCcccccCCHHHHhcCcEEEcCH
Confidence 99998766432 24444332 245677889999988888877778887776443
No 140
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.40 E-value=0.99 Score=45.16 Aligned_cols=113 Identities=11% Similarity=0.043 Sum_probs=70.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccc
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC 328 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~ 328 (408)
...++++|.|.|..|+..++.+.. .+.+-|.|.|.+ .+...++.++-+.. ++ ....-+.++.+ .++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~a~~~~~~-~~-~~~~~~~~~av-~~a 189 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT----------AASAAAFCAHARAL-GP-TAEPLDGEAIP-EAV 189 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-eeEECCHHHHh-hcC
Confidence 467899999999999999999865 677767676653 34444444332111 11 11111223344 489
Q ss_pred cEEeeccCC--CccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEE
Q 015361 329 DVLIPCALG--GVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTIL 377 (408)
Q Consensus 329 DIliPaA~~--~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vv 377 (408)
||++=|... ..++.. -+-++-+++=|++.|--.|.+..+.++--+|+
T Consensus 190 DiVitaT~s~~Pl~~~~--~~~g~hi~~iGs~~p~~~El~~~~~~~a~v~v 238 (304)
T PRK07340 190 DLVVTATTSRTPVYPEA--ARAGRLVVAVGAFTPDMAELAPRTVRGSRLYV 238 (304)
T ss_pred CEEEEccCCCCceeCcc--CCCCCEEEecCCCCCCcccCCHHHHhhCeEEE
Confidence 999998753 345442 34567899999999987777654444543344
No 141
>PRK07680 late competence protein ComER; Validated
Probab=93.33 E-value=0.18 Score=49.21 Aligned_cols=111 Identities=15% Similarity=0.273 Sum_probs=63.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC---EEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC 328 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~ 328 (408)
++|.|+|.|++|+.+++.|.+.|. .-|.+.|.+ .+.+.+..++ +++.... ++.+++ .++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~----------~~~~~~~~~~------~~g~~~~~~~~~~~-~~a 63 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT----------PAKAYHIKER------YPGIHVAKTIEEVI-SQS 63 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC----------HHHHHHHHHH------cCCeEEECCHHHHH-HhC
Confidence 369999999999999999998884 234455543 2333333222 1122222 223333 478
Q ss_pred cEEeeccCCCcccc---cccccc-ccEEEEecCCCCCCHHHHHHHHhCCCeEEcch
Q 015361 329 DVLIPCALGGVLKR---ENAADV-KAKFIIEAANHPTDPEADEILSKRGVTILPDI 380 (408)
Q Consensus 329 DIliPaA~~~~I~~---~na~~i-~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~ 380 (408)
|+++-|.....+.+ +-++.+ +-++|+.-+|+-...+..+.+..+.+.++|..
T Consensus 64 DiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~ 119 (273)
T PRK07680 64 DLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSI 119 (273)
T ss_pred CEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCCh
Confidence 99999875443211 112223 23578888875433444455555556788853
No 142
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.30 E-value=0.28 Score=48.94 Aligned_cols=53 Identities=26% Similarity=0.265 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-.+|.+|++. ++++.+.+++|++|+|.| ...||+-++.+|.++++.|+ +++++
T Consensus 139 ~PcTp~avi~----ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~ 192 (284)
T PRK14177 139 LPCTPYGMVL----LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSK 192 (284)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 4579888876 555679999999999999 57899999999999999887 77764
No 143
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.25 E-value=0.53 Score=49.16 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=27.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|.||..+|..|.+.|..|+++ |.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~-D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGV-DI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEE-eC
Confidence 68999999999999999999999999854 54
No 144
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.19 E-value=0.13 Score=46.69 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
.+++|++|.|.|.|+||...++.|.+.|++|+-|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 5789999999999999999999999999999845
No 145
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.18 E-value=0.33 Score=47.69 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=64.3
Q ss_pred CeEEEEc-cChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC-CCccccccc
Q 015361 253 LTFVIQG-FGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-SELLAHECD 329 (408)
Q Consensus 253 ~rvaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~-~ell~~~~D 329 (408)
.||+|.| +|.+|+.+++.+.+ .+++++++.|....- ..|-|..++.... .+ +....++ +++ ..++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~--~~~~~~~~~~~~~-------~~-gv~~~~d~~~l-~~~~D 70 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSS--LQGTDAGELAGIG-------KV-GVPVTDDLEAV-ETDPD 70 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--ccCCCHHHhcCcC-------cC-CceeeCCHHHh-cCCCC
Confidence 4899999 69999999998875 689999999953211 0133444332111 01 1111122 333 45789
Q ss_pred EEeeccCCCccccccccc---cccEEEEecCCCCCCHH-HHH---HHHhCCCeEE
Q 015361 330 VLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPE-ADE---ILSKRGVTIL 377 (408)
Q Consensus 330 IliPaA~~~~I~~~na~~---i~akiIvEgAN~p~T~e-A~~---iL~~rGI~vv 377 (408)
++|.|+.. ....+++.. -+..+|+|=- ..|++ .++ .-++.|+.++
T Consensus 71 vVIdfT~p-~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 71 VLIDFTTP-EGVLNHLKFALEHGVRLVVGTT--GFSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred EEEECCCh-HHHHHHHHHHHHCCCCEEEECC--CCCHHHHHHHHHHHhcCCccEE
Confidence 99999743 334444443 3667888765 35553 332 2345555443
No 146
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.15 E-value=0.76 Score=47.95 Aligned_cols=115 Identities=30% Similarity=0.413 Sum_probs=70.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC---------CeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT---------GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL 323 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~---------G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~el 323 (408)
.|++|.|.|-||.-+|-.+...|++|+|+ |.+ |..|=.+ .+.+++++..-+.|.+. ..+..+-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr------aTtd~~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR------ATTDPEE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce------EecChhh
Confidence 89999999999999999999999999986 433 3333211 23444443333333332 1222333
Q ss_pred ccccccEEeeccCCCcccccc---------c-cc------cccEEEEecCCCC-CCHHHHH-HHHhCCCeEE
Q 015361 324 LAHECDVLIPCALGGVLKREN---------A-AD------VKAKFIIEAANHP-TDPEADE-ILSKRGVTIL 377 (408)
Q Consensus 324 l~~~~DIliPaA~~~~I~~~n---------a-~~------i~akiIvEgAN~p-~T~eA~~-iL~~rGI~vv 377 (408)
+. +||+++=|- +..++... | +. -+.-+|.|..=-| +|.+-.+ +|++++-+.+
T Consensus 82 l~-~~dv~iI~V-PTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~ 151 (436)
T COG0677 82 LK-ECDVFIICV-PTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKF 151 (436)
T ss_pred cc-cCCEEEEEe-cCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcc
Confidence 44 899998773 33333321 1 11 1667999999888 6776655 5555454444
No 147
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.05 E-value=0.44 Score=47.16 Aligned_cols=36 Identities=33% Similarity=0.614 Sum_probs=31.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+..+|+|.|.|.||+++|+.|.+.|..=+.+.|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999996556687865
No 148
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=92.98 E-value=0.12 Score=51.15 Aligned_cols=53 Identities=34% Similarity=0.365 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
.+|-.|++. +++++|+.+.|++++|.| .=+||.-+|.+|+..|+++-.+-|.+
T Consensus 147 PcTP~gv~e----iL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~dat 200 (309)
T KOG0089|consen 147 PCTPLGVVE----ILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDAT 200 (309)
T ss_pred CCchHHHHH----HHHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcce
Confidence 578888864 566789999999999999 78999999999999999887766654
No 149
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=92.96 E-value=0.29 Score=46.80 Aligned_cols=88 Identities=26% Similarity=0.289 Sum_probs=54.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc--cccccE
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--AHECDV 330 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell--~~~~DI 330 (408)
++++|.|.||+|+.+++.|...|+.|+ |+.+++ .+++....+..+.. +...+.. ...|||
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r~---------~~~~~a~a~~l~~~--------i~~~~~~dA~~~aDV 63 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSRG---------PKALAAAAAALGPL--------ITGGSNEDAAALADV 63 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCCC---------hhHHHHHHHhhccc--------cccCChHHHHhcCCE
Confidence 578999999999999999999999998 666653 33444333332211 2222222 235899
Q ss_pred EeeccCCCcccccccc----ccccEEEEecCCC
Q 015361 331 LIPCALGGVLKRENAA----DVKAKFIIEAANH 359 (408)
Q Consensus 331 liPaA~~~~I~~~na~----~i~akiIvEgAN~ 359 (408)
++-+-. -.-..+.+. .++-|+|+...|-
T Consensus 64 VvLAVP-~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 64 VVLAVP-FEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEEecc-HHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 888643 222222222 3456899998884
No 150
>PLN02306 hydroxypyruvate reductase
Probab=92.93 E-value=0.15 Score=52.98 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHHH-HCCCEEEEe
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLIH-ERGGKVIAV 281 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L~-~~GakVVaV 281 (408)
|.++.|+||.|.|+|++|+.+|++|. ..|++|++.
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~ 195 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 44689999999999999999999985 789999854
No 151
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.93 E-value=0.14 Score=46.46 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=27.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+...+|+|.|.|+||..+++.|...|++++ +.|.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d~ 51 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPDE 51 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEES
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-eccC
Confidence 566899999999999999999999999998 4454
No 152
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.67 E-value=0.44 Score=48.56 Aligned_cols=93 Identities=15% Similarity=0.276 Sum_probs=56.0
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc----------CCCCe-ec--
Q 015361 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD----------FDGGD-SM-- 318 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~----------~~~~~-~i-- 318 (408)
.||+|.|||.+|+.+++.+.+ .++++++|.|++- +......++.| +.- +.+.. .+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~----------~~~~~la~~~G-~~~~~~~~~~~~~~~~~~i~V~~ 70 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP----------DYEARVAVEKG-YPLYVADPEREKAFEEAGIPVAG 70 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh----------HHHHHHHHhcC-CCccccCccccccccCCceEEcC
Confidence 489999999999999998874 5799999998641 11111111111 100 11111 11
Q ss_pred CCCCcccccccEEeeccCCCccccccccc---cccEEEEecCC
Q 015361 319 EPSELLAHECDVLIPCALGGVLKRENAAD---VKAKFIIEAAN 358 (408)
Q Consensus 319 ~~~ell~~~~DIliPaA~~~~I~~~na~~---i~akiIvEgAN 358 (408)
+.++++ .++|+++.|+ +...+.+++.. -++++|.-+..
T Consensus 71 ~~~el~-~~vDVVIdaT-~~~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 71 TIEDLL-EKADIVVDAT-PGGVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred ChhHhh-ccCCEEEECC-CchhhHHHHHHHHHCCCEEEEcCCC
Confidence 123344 4699999996 44466666654 36788877753
No 153
>PRK14851 hypothetical protein; Provisional
Probab=92.60 E-value=0.39 Score=53.38 Aligned_cols=119 Identities=10% Similarity=0.088 Sum_probs=64.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccccccc
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD 329 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~D 329 (408)
|++.+|+|.|.|-||+.+++.|...|..-+.+.|.+- +++.-|+.+-+... ..+ +-++.+. -.+.+.+...+
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~~~~----~dv-G~~Kv~v-~~~~l~~inP~ 112 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFGARV----PSF-GRPKLAV-MKEQALSINPF 112 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcCcCh----hhC-CCHHHHH-HHHHHHHhCCC
Confidence 6788999999999999999999999987777888652 12111221110000 000 0000100 01222233333
Q ss_pred EEeeccCCCcccccccccc--ccEEEEecCCCCCCH---HHHHHHHhCCCeEE
Q 015361 330 VLIPCALGGVLKRENAADV--KAKFIIEAANHPTDP---EADEILSKRGVTIL 377 (408)
Q Consensus 330 IliPaA~~~~I~~~na~~i--~akiIvEgAN~p~T~---eA~~iL~~rGI~vv 377 (408)
+=|.+ ....|+.+|+..+ ++.+|+++...+... ...+...+++|.++
T Consensus 113 ~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i 164 (679)
T PRK14851 113 LEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVI 164 (679)
T ss_pred CeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 33332 2334566776654 677888888765322 12233457777765
No 154
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.60 E-value=0.17 Score=47.82 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEee
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (408)
.+++|++|.|.|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 46899999999999999999999999999988453
No 155
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=92.58 E-value=0.31 Score=49.15 Aligned_cols=113 Identities=23% Similarity=0.300 Sum_probs=68.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHH
Q 015361 223 GSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA 301 (408)
Q Consensus 223 Gs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~ 301 (408)
|++|.+..|+| ++ |.+.|..-.|.+|+|.+. |.||+-+.++-.-+|++||+++-+. ++..=
T Consensus 129 gvLGmpG~TAY---~g----Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~-----------eK~~~ 190 (340)
T COG2130 129 GVLGMPGLTAY---FG----LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA-----------EKCDF 190 (340)
T ss_pred hhcCCchHHHH---HH----HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH-----------HHHHH
Confidence 55565555554 33 335677778999999995 9999999988888999999998773 12111
Q ss_pred hHhhcC--CcccCCCCeecCCCCccc----ccccEEeeccCCCcccccccc--ccccEEEEecC
Q 015361 302 HKDKTG--SLKDFDGGDSMEPSELLA----HECDVLIPCALGGVLKRENAA--DVKAKFIIEAA 357 (408)
Q Consensus 302 ~~~~~g--~l~~~~~~~~i~~~ell~----~~~DIliPaA~~~~I~~~na~--~i~akiIvEgA 357 (408)
.+++-| ..-+|... +-.+-|. -..||++++--+++.+ .-.. +.+||+++.|+
T Consensus 191 l~~~lGfD~~idyk~~---d~~~~L~~a~P~GIDvyfeNVGg~v~D-Av~~~ln~~aRi~~CG~ 250 (340)
T COG2130 191 LTEELGFDAGIDYKAE---DFAQALKEACPKGIDVYFENVGGEVLD-AVLPLLNLFARIPVCGA 250 (340)
T ss_pred HHHhcCCceeeecCcc---cHHHHHHHHCCCCeEEEEEcCCchHHH-HHHHhhccccceeeeee
Confidence 111111 11223211 1122222 2469999996555443 2233 35789999987
No 156
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.56 E-value=3.1 Score=41.16 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc
Q 015361 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~ 311 (408)
++|...++++ .+.+ .+++++|.|.|-.++.++..|.+.|++-|.|.+.+ .++..+..+.-+
T Consensus 107 ~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~~a~~la~~~~---- 167 (272)
T PRK12550 107 YIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN----------EKTGKALAELYG---- 167 (272)
T ss_pred HHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHhC----
Confidence 5677766653 3554 35699999999999999999999998766687764 233333322211
Q ss_pred CCCCeecCCCCcccccccEEeeccCCCcccccc-------cccc-ccEEEEecCCCCC-CHHHHHHHHhCCCeEEc
Q 015361 312 FDGGDSMEPSELLAHECDVLIPCALGGVLKREN-------AADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP 378 (408)
Q Consensus 312 ~~~~~~i~~~ell~~~~DIliPaA~~~~I~~~n-------a~~i-~akiIvEgAN~p~-T~eA~~iL~~rGI~vvP 378 (408)
++ .. +++-...+|++|-|..-+.-...+ ...+ +..+|.+-...|. |+ --+.-+++|..++.
T Consensus 168 ~~----~~-~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~i~ 237 (272)
T PRK12550 168 YE----WR-PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETP-LIRYARARGKTVIT 237 (272)
T ss_pred Cc----ch-hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCH-HHHHHHHCcCeEeC
Confidence 11 00 112124589999987533321111 1112 3468889998885 54 55666788888763
No 157
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=92.54 E-value=0.26 Score=49.82 Aligned_cols=81 Identities=25% Similarity=0.419 Sum_probs=54.8
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccc
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC 328 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~ 328 (408)
=+.|+-++|.|+|+||...|..|.-.|++|+ |...+ .+.+|.+..+ +| +.++-+|.. ..+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEiD---------PI~ALQAaMe------G~---~V~tm~ea~-~e~ 270 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEID---------PICALQAAME------GY---EVTTLEEAI-REV 270 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEE-EeccC---------chHHHHHHhh------cc---EeeeHHHhh-hcC
Confidence 3789999999999999999999999999998 76664 2555554433 12 222223322 367
Q ss_pred cEEeeccC-CCccccccccccc
Q 015361 329 DVLIPCAL-GGVLKRENAADVK 349 (408)
Q Consensus 329 DIliPaA~-~~~I~~~na~~i~ 349 (408)
||||-+.. .+.|+.+.-++.+
T Consensus 271 difVTtTGc~dii~~~H~~~mk 292 (434)
T KOG1370|consen 271 DIFVTTTGCKDIITGEHFDQMK 292 (434)
T ss_pred CEEEEccCCcchhhHHHHHhCc
Confidence 88888754 5567766555543
No 158
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.50 E-value=0.68 Score=46.33 Aligned_cols=111 Identities=20% Similarity=0.144 Sum_probs=61.3
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCC------Ceec-CCCCcc
Q 015361 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG------GDSM-EPSELL 324 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~------~~~i-~~~ell 324 (408)
.++|+|.|.|++|+.+|..|.+.|..|+ +.|.+ .+.+....+.+.....+++ .... +..+.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~r~----------~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWARR----------PEFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 4689999999999999999999999876 44442 1222222221111111111 1111 112222
Q ss_pred cccccEEeeccCCCccccccccccc-cEEEEecCCCC--C---CHHHHHHHHh---CCCe
Q 015361 325 AHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHP--T---DPEADEILSK---RGVT 375 (408)
Q Consensus 325 ~~~~DIliPaA~~~~I~~~na~~i~-akiIvEgAN~p--~---T~eA~~iL~~---rGI~ 375 (408)
.+||+++-|.....+ ++-.+.++ -.+|+.-+|+- . +.+..+.+.+ +++.
T Consensus 73 -~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~ 130 (328)
T PRK14618 73 -AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA 130 (328)
T ss_pred -cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE
Confidence 479999998765543 33334442 24677778852 1 2344455655 6654
No 159
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=92.48 E-value=1.2 Score=46.41 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=28.0
Q ss_pred CeEEEEccChHHHHHHHHHHHC---CCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 284 (408)
.||+|.|||-+|+.+.+.|.+. ...|++|-|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~ 95 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT 95 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 6999999999999999999876 4789988764
No 160
>PLN00203 glutamyl-tRNA reductase
Probab=92.48 E-value=0.56 Score=50.59 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=70.7
Q ss_pred HHHHHHHHHH-HHhCC-CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc
Q 015361 234 GVVYATEALL-AEHGQ-AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311 (408)
Q Consensus 234 Gv~~~~~~~l-~~~g~-~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~ 311 (408)
+|.+++-++. +.++. ++.+++|.|.|.|.+|+.+++.|...|++-|.|.+.+ .+...++.++.+..
T Consensus 246 Sv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~era~~La~~~~g~-- 313 (519)
T PLN00203 246 SVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------EERVAALREEFPDV-- 313 (519)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------HHHHHHHHHHhCCC--
Confidence 4444333444 45554 5899999999999999999999999997545466654 23343333332111
Q ss_pred CCCCeecCCCCcc--cccccEEeecc--CCCccccccccccc--------cEEEEecCCCC-CCHH
Q 015361 312 FDGGDSMEPSELL--AHECDVLIPCA--LGGVLKRENAADVK--------AKFIIEAANHP-TDPE 364 (408)
Q Consensus 312 ~~~~~~i~~~ell--~~~~DIliPaA--~~~~I~~~na~~i~--------akiIvEgAN~p-~T~e 364 (408)
.....+.+++. -.++||+|-|. ....|+.+.+..+. -+++++-|.-. +.|+
T Consensus 314 --~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~ 377 (519)
T PLN00203 314 --EIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGAC 377 (519)
T ss_pred --ceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccc
Confidence 00111112221 24789999885 35567777766542 24888888754 4553
No 161
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=92.47 E-value=0.48 Score=47.40 Aligned_cols=107 Identities=25% Similarity=0.301 Sum_probs=64.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccEEe
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI 332 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DIli 332 (408)
.||+++|+|++|+..|.-|.+.|+.+. |.|.+ .++..+..++.| ++..+...=....+||+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~r~----------~~ka~~~~~~~G-------a~~a~s~~eaa~~aDvVi 62 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYNRT----------PEKAAELLAAAG-------ATVAASPAEAAAEADVVI 62 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEE-EEeCC----------hhhhhHHHHHcC-------CcccCCHHHHHHhCCEEE
Confidence 479999999999999999999999887 66653 344222222211 222211112345788888
Q ss_pred eccC-----CCcccccc--cccc-ccEEEEecCCC-C-CCHHHHHHHHhCCCeEE
Q 015361 333 PCAL-----GGVLKREN--AADV-KAKFIIEAANH-P-TDPEADEILSKRGVTIL 377 (408)
Q Consensus 333 PaA~-----~~~I~~~n--a~~i-~akiIvEgAN~-p-~T~eA~~iL~~rGI~vv 377 (408)
-|-. +.++..++ +... +-+++++-... | .+.+..+.++++|+.++
T Consensus 63 tmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 63 TMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred EecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 7742 22232211 1111 34566665554 4 35677788999999887
No 162
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.44 E-value=0.28 Score=41.04 Aligned_cols=107 Identities=25% Similarity=0.308 Sum_probs=63.2
Q ss_pred CeEEEEccChHHHHHHHHHHHC--CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccc-cccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECD 329 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~-~~~D 329 (408)
.||+|+|.|+.|+.-.+.+.+. +.++++|+|.+ .+...+..++.+ +..| -+.+++++ .++|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~----------~~~~~~~~~~~~-~~~~-----~~~~~ll~~~~~D 64 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD----------PERAEAFAEKYG-IPVY-----TDLEELLADEDVD 64 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHTT-SEEE-----SSHHHHHHHTTES
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC----------HHHHHHHHHHhc-ccch-----hHHHHHHHhhcCC
Confidence 3799999999999998777655 68999999985 344444433322 2222 23456775 4799
Q ss_pred EEeeccCCCccccccccc---cccEEEEecCCCCCCHHHHH---HHHhCCCeE
Q 015361 330 VLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADE---ILSKRGVTI 376 (408)
Q Consensus 330 IliPaA~~~~I~~~na~~---i~akiIvEgAN~p~T~eA~~---iL~~rGI~v 376 (408)
+++=|... ..+.+-+.+ -+..+++|=-=.....++++ ..+++|+.+
T Consensus 65 ~V~I~tp~-~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 65 AVIIATPP-SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp EEEEESSG-GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred EEEEecCC-cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 99988543 223332222 24477777421122234443 345666654
No 163
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.44 E-value=2.4 Score=38.20 Aligned_cols=32 Identities=31% Similarity=0.593 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 284 (408)
.+|+|.|||.+|+.+++.+.+ .+.+++++.|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 479999999999999998874 67999999874
No 164
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.43 E-value=0.093 Score=51.71 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=27.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|++|+.+|..|...|..|+ +.|.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence 579999999999999999999999887 4454
No 165
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.41 E-value=1.3 Score=45.33 Aligned_cols=96 Identities=27% Similarity=0.368 Sum_probs=56.8
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHH---HHHhHhhcCCccc---CC------CCeec-
Q 015361 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHK---LLAHKDKTGSLKD---FD------GGDSM- 318 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~---L~~~~~~~g~l~~---~~------~~~~i- 318 (408)
.||+|-|||-+|+.+.|.+.+ ....||+|-|... |++. |++|=-.+|.+.. +. +++.+
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~--------~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFM--------TLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCC--------ChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 589999999999999998764 4699999977432 3332 2222212232210 11 11111
Q ss_pred -----CCCCc-c-cccccEEeeccCCCccccccccc---cccEEEEecC
Q 015361 319 -----EPSEL-L-AHECDVLIPCALGGVLKRENAAD---VKAKFIIEAA 357 (408)
Q Consensus 319 -----~~~el-l-~~~~DIliPaA~~~~I~~~na~~---i~akiIvEgA 357 (408)
++.++ | +.++|+.+.|+.. ..+.+.++. -+||.|.-.|
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~-~~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGV-FLTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecch-hcCHHHHHHHhhCCCEEEEeCC
Confidence 11221 3 5789999998643 366666554 3677776666
No 166
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.4 Score=48.61 Aligned_cols=125 Identities=25% Similarity=0.370 Sum_probs=71.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCC-----------eEeCCCCCC-HHHHHHhHhhcCCcccCCCC-e
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG-----------AVKNADGID-IHKLLAHKDKTGSLKDFDGG-D 316 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G-----------~iydp~GLD-i~~L~~~~~~~g~l~~~~~~-~ 316 (408)
+++.=|+|+|.|.||++++-+|.+.|.+-+-|.|-+- ++.+.-|.. ..-|+++..+--.+++.... .
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~ 151 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNM 151 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHh
Confidence 7888899999999999999999999976665666431 111222321 22334444433333332110 0
Q ss_pred ---ecCCCCcccccccEEeeccCCCccccc-------------------cc----cccccEEEEecCCCCCCHHHHHHHH
Q 015361 317 ---SMEPSELLAHECDVLIPCALGGVLKRE-------------------NA----ADVKAKFIIEAANHPTDPEADEILS 370 (408)
Q Consensus 317 ---~i~~~ell~~~~DIliPaA~~~~I~~~-------------------na----~~i~akiIvEgAN~p~T~eA~~iL~ 370 (408)
.-+.++++..+.|..+.|- .|.-|.- -+ -+++.-=|.+-.--|++...++.|+
T Consensus 152 l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLr 230 (430)
T KOG2018|consen 152 LWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRLR 230 (430)
T ss_pred hcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHHH
Confidence 1133567777788888873 3322211 01 1122223444445566667788999
Q ss_pred hCCCe
Q 015361 371 KRGVT 375 (408)
Q Consensus 371 ~rGI~ 375 (408)
+|||.
T Consensus 231 k~GI~ 235 (430)
T KOG2018|consen 231 KRGIE 235 (430)
T ss_pred Hhccc
Confidence 99874
No 167
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.38 E-value=0.36 Score=48.24 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=43.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
-.+|..|++. ++++.+.+++|++|+|.| ..-||+-++.+|.++++.|+ ++++
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs 190 (284)
T PRK14190 138 LPCTPHGILE----LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS 190 (284)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence 3578887754 556789999999999999 58899999999999999887 5554
No 168
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=92.35 E-value=0.48 Score=47.69 Aligned_cols=53 Identities=25% Similarity=0.267 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-.+|.+|++. ++++.|.+++|++|+|.| ...||+-++.+|.++++.|+ ++.++
T Consensus 147 ~PcTp~avi~----lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~ 200 (299)
T PLN02516 147 LPCTPKGCLE----LLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR 200 (299)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 4689888655 455678999999999999 57799999999999999887 66664
No 169
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=92.32 E-value=0.43 Score=48.75 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=29.7
Q ss_pred hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEE
Q 015361 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (408)
Q Consensus 246 ~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVV 279 (408)
+|.++.|+||.|.|+|.+|+.+|+.|...|..+.
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~ 189 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL 189 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhccceee
Confidence 4667999999999999999999999999884443
No 170
>PRK14852 hypothetical protein; Provisional
Probab=92.31 E-value=0.4 Score=55.14 Aligned_cols=120 Identities=11% Similarity=0.084 Sum_probs=67.7
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccc
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC 328 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~ 328 (408)
.|+..+|+|.|.|-||+.+++.|...|..-+.+.|-+- ++..=|+.+-+.. ...+ +-++++ +-.+.+.+.+.
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~--Ve~SNLNRQ~l~~----~~dI-G~~Kae-vaa~~l~~INP 400 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA--YSPVNLNRQYGAS----IASF-GRGKLD-VMTERALSVNP 400 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE--ecccccccccCCC----hhhC-CChHHH-HHHHHHHHHCC
Confidence 38899999999999999999999999987777888652 1111121110000 0000 000000 00112333333
Q ss_pred cEEeeccCCCcccccccccc--ccEEEEecCCCCCCHHHH---HHHHhCCCeEE
Q 015361 329 DVLIPCALGGVLKRENAADV--KAKFIIEAANHPTDPEAD---EILSKRGVTIL 377 (408)
Q Consensus 329 DIliPaA~~~~I~~~na~~i--~akiIvEgAN~p~T~eA~---~iL~~rGI~vv 377 (408)
++=|.+- ..-|+++|+..+ ++-+|+++..++.+.... ....++||.++
T Consensus 401 ~v~I~~~-~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I 453 (989)
T PRK14852 401 FLDIRSF-PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVI 453 (989)
T ss_pred CCeEEEE-ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEE
Confidence 3334332 223577777775 778888888876553222 23467888776
No 171
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=92.27 E-value=0.21 Score=46.07 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCe
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGA 287 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~ 287 (408)
|++++|+|.|||+-|..-|.-|.+.|.+|+ |....+.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~s 38 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREGS 38 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TTC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCCC
Confidence 578999999999999999999999999998 6665543
No 172
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.26 E-value=0.33 Score=49.60 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=34.2
Q ss_pred HHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 242 LLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 242 ~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+|++.+.. .|.+|+|.|+|-+|..+++++...|++|++++-+
T Consensus 158 alk~~~~~-pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~ 199 (339)
T COG1064 158 ALKKANVK-PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS 199 (339)
T ss_pred ehhhcCCC-CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 44443333 5899999999999999999999999999987554
No 173
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.22 E-value=0.4 Score=47.76 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-..|..|++. ++++.+.+++|++|+|.| ...||.-++.+|.++++.|. +++++
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~ 191 (278)
T PRK14172 138 LPCTPNSVIT----LIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSK 191 (278)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 4578888765 556678999999999999 57899999999999999886 77664
No 174
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.12 E-value=0.66 Score=48.13 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=66.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc-----C---CCCee-cCC-CC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD-----F---DGGDS-MEP-SE 322 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~-----~---~~~~~-i~~-~e 322 (408)
++|+|.|.|.||..+|..|. .|+.|+ +.|.+ .+++.+..+..-.+.+ + ..... .+. .+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~d----------~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDIL----------PSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEECC----------HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence 37999999999999998777 499888 44643 2222222211000000 0 00111 111 11
Q ss_pred cccccccEEeeccCCCccccc-------ccc-------cc--ccEEEEecCCCC-CCHHHHHHHHhCCCeEEcchhccc
Q 015361 323 LLAHECDVLIPCALGGVLKRE-------NAA-------DV--KAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANS 384 (408)
Q Consensus 323 ll~~~~DIliPaA~~~~I~~~-------na~-------~i--~akiIvEgAN~p-~T~eA~~iL~~rGI~vvPD~laNa 384 (408)
-...+||+++-|-.+. ++.. .+. ++ +.-+|.+.-=-| +|.+..+.+.++|+.+.|.++...
T Consensus 69 ~~~~~ad~vii~Vpt~-~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G 146 (388)
T PRK15057 69 EAYRDADYVIIATPTD-YDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREG 146 (388)
T ss_pred hhhcCCCEEEEeCCCC-CccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCC
Confidence 1235899999986544 2221 111 11 334555655555 556666778888999999987543
No 175
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.12 E-value=0.22 Score=50.79 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=30.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
|+|+||+|+|+|++|+..|+.|...|.+|+..
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 89999999999999999999999999999854
No 176
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.08 E-value=0.28 Score=46.34 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHH--HHHCCCEEEEeecCCC
Q 015361 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARL--IHERGGKVIAVSDITG 286 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~--L~~~GakVVaVsD~~G 286 (408)
||-|-+-.+++.+.+|.+ +-..++|+|.||.|++++.+ ..+.|.+++++.|.+.
T Consensus 65 GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~ 120 (211)
T COG2344 65 GYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDP 120 (211)
T ss_pred CccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCH
Confidence 566666666666677877 44689999999999999844 3578999999999863
No 177
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.01 E-value=0.21 Score=47.21 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEee
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (408)
.+++|++|+|.|.|.||..-++.|.+.|++|+-|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 35889999999999999999999999999998443
No 178
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.99 E-value=0.44 Score=47.52 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=44.3
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
.-.+|.+|+.. ++++.+.+++|++|+|.| ...||+-++.+|.++++.|+ ++.++
T Consensus 135 ~~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~ 189 (282)
T PRK14169 135 VVASTPYGIMA----LLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSK 189 (282)
T ss_pred CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCC
Confidence 34689888765 455679999999999999 57799999999999999887 66553
No 179
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.98 E-value=0.43 Score=47.63 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
..+|..|++ +++++.+.+++|++|+|.|-+ .||.-++.+|.++++.|. ++.+.
T Consensus 137 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~ 190 (281)
T PRK14183 137 VPCTPLGVM----ELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF 190 (281)
T ss_pred CCCcHHHHH----HHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 467888775 456677999999999999976 899999999999999887 77653
No 180
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.87 E-value=0.38 Score=55.82 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=80.3
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCC-CE------------EEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCe-
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERG-GK------------VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD- 316 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~G-ak------------VVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~- 316 (408)
+.++|+|.|.|.||+..++.|.+.. +. +|+|+|.+ .+...+..++ +++.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~----------~~~a~~la~~------~~~~~~ 631 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY----------LKDAKETVEG------IENAEA 631 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC----------HHHHHHHHHh------cCCCce
Confidence 4679999999999999999998653 33 57788864 3344333332 12211
Q ss_pred -e--c-CCCCccc--ccccEEeeccCCCccccccccc---cccEEEEecCCCCCCHHHHHHHHhCCCeEEcchhcccccc
Q 015361 317 -S--M-EPSELLA--HECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGV 387 (408)
Q Consensus 317 -~--i-~~~ell~--~~~DIliPaA~~~~I~~~na~~---i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~laNaGGV 387 (408)
. + +.+++.. .++|++|-|.. ...+.+.|.. .+.-+++|.-..+-+.+.++..+++|+.++|+.--+-|=.
T Consensus 632 v~lDv~D~e~L~~~v~~~DaVIsalP-~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid 710 (1042)
T PLN02819 632 VQLDVSDSESLLKYVSQVDVVISLLP-ASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPGID 710 (1042)
T ss_pred EEeecCCHHHHHHhhcCCCEEEECCC-chhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHHHH
Confidence 1 2 2244554 47999998854 3455554443 4667888873322233344677899999999887554433
Q ss_pred hhhHHHHHhc
Q 015361 388 TVSYFEWVQV 397 (408)
Q Consensus 388 ivSy~Ew~qn 397 (408)
-....++++.
T Consensus 711 ~~lA~~~Id~ 720 (1042)
T PLN02819 711 HMMAMKMIDD 720 (1042)
T ss_pred HHHHHHHHHh
Confidence 3344555543
No 181
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.86 E-value=0.46 Score=47.49 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-.+|..|+.. ++++.|.+++|++|+|.|- ..||+-++.+|.++++.|+ ++.++
T Consensus 137 ~PcTp~avi~----lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~ 190 (284)
T PRK14170 137 VPCTPAGIIE----LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSR 190 (284)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 4688877765 4567899999999999995 6799999999999999887 66653
No 182
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.85 E-value=0.46 Score=47.41 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
-.+|.+|++.. +++.+.+++|++|+|.| ...||+-++.+|.++++.|+ ++.+
T Consensus 138 ~PcTp~aii~l----L~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs 190 (282)
T PRK14180 138 ESCTPKGIMTM----LREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHR 190 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcC
Confidence 45788887654 45678999999999999 57799999999999999886 6655
No 183
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=91.84 E-value=1.8 Score=44.30 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=27.5
Q ss_pred CeEEEEccChHHHHHHHHHHHC---CCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 284 (408)
.||+|-|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~ 36 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT 36 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC
Confidence 4899999999999999987654 6899999774
No 184
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=91.78 E-value=0.72 Score=45.81 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=62.4
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccccccEEe
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLI 332 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~DIli 332 (408)
+|.++|.|++|+.+++.|.+.|..|+ |.|.+ + +.+++ .+ .+ .... ++.++ ...||+++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~~-----~---~~~~~---~~-~g-------~~~~~s~~~~-~~~advVi 60 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTIG-----P---VADEL---LS-LG-------AVSVETARQV-TEASDIIF 60 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEE-EEeCC-----H---hHHHH---HH-cC-------CeecCCHHHH-HhcCCEEE
Confidence 69999999999999999999999876 55542 1 11222 11 11 1111 22333 24789998
Q ss_pred eccCCC-----cccccc--ccc-cccEEEEecCCCC--CCHHHHHHHHhCCCeEEc
Q 015361 333 PCALGG-----VLKREN--AAD-VKAKFIIEAANHP--TDPEADEILSKRGVTILP 378 (408)
Q Consensus 333 PaA~~~-----~I~~~n--a~~-i~akiIvEgAN~p--~T~eA~~iL~~rGI~vvP 378 (408)
-|-... ++..++ +.. ..-++|++-.... ++.+..+.+.++|+.++-
T Consensus 61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 875432 121111 111 2346777766553 345566788999998774
No 185
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=91.74 E-value=0.4 Score=41.07 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=32.2
Q ss_pred eEEEEc-cChHHHHHHHHHHHC-CCEEEEeecCCCeEeCCCCCCHHHHH
Q 015361 254 TFVIQG-FGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLL 300 (408)
Q Consensus 254 rvaIqG-fGnVG~~~a~~L~~~-GakVVaVsD~~G~iydp~GLDi~~L~ 300 (408)
||+|.| .|.+|+.++++|.++ .+.++.+..++. ..|..+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~~ 45 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEVF 45 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehhc
Confidence 799999 899999999999874 578888777652 2455555443
No 186
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.66 E-value=0.5 Score=47.31 Aligned_cols=53 Identities=28% Similarity=0.317 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-.+|.+|+.. ++++.+.+++|++|+|.| ...||.-++.+|.++++.|+ ++.++
T Consensus 135 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~ 188 (287)
T PRK14173 135 EPCTPAGVVR----LLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK 188 (287)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC
Confidence 4688888765 455779999999999999 57899999999999999887 66553
No 187
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=91.59 E-value=2.3 Score=43.72 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=27.6
Q ss_pred CeEEEEccChHHHHHHHHHHH-CCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 284 (408)
.||+|-|||-+|+.+.|.+.+ ....||+|-|.
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~ 35 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS 35 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC
Confidence 489999999999999998765 45899999774
No 188
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.59 E-value=0.51 Score=47.25 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-..|..|++ +++++.+.+++|++|+|.| ..-||+-++.+|.++++.|+ ++.++
T Consensus 139 ~PcTp~av~----~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~ 192 (288)
T PRK14171 139 IPCTALGCL----AVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSK 192 (288)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 457888865 4556679999999999999 47799999999999999886 77764
No 189
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.58 E-value=0.51 Score=47.08 Aligned_cols=53 Identities=26% Similarity=0.230 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-.+|..||+.- +++.+.+++|++|+|.| ...||+-++.+|.++++.|+ ++.++
T Consensus 137 ~PcTp~avi~l----L~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~ 190 (282)
T PRK14166 137 LPCTPLGVMKL----LKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIK 190 (282)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 35788887654 55678999999999999 57799999999999999887 66653
No 190
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.58 E-value=0.51 Score=47.41 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecC
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+|.+|++. +++..|.+++|++|+|.| ..-||+-++.+|.++|+.|+ ++.+
T Consensus 139 PcTp~aii~----lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs 190 (297)
T PRK14186 139 SCTPAGVMR----LLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHS 190 (297)
T ss_pred CCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCC
Confidence 578877764 556679999999999999 57799999999999999887 5554
No 191
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.58 E-value=0.45 Score=47.41 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccC-hHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
..+|..|++. ++++.+.+++|++|+|.|-+ .||+.++.+|..+|+.|. +++++
T Consensus 132 ~PcTp~av~~----ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~ 185 (279)
T PRK14178 132 APCTPNGIMT----LLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSK 185 (279)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecC
Confidence 4688888765 45567899999999999987 999999999999999887 55553
No 192
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=91.47 E-value=0.26 Score=50.16 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEE
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIA 280 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVa 280 (408)
+++++|+|+|+|++|+..|+.|.+.|.+|+.
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 7899999999999999999999999999874
No 193
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.19 E-value=0.58 Score=46.96 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
.+|..|++ +++++.+.+++|++|+|.| ...||+-++.+|.++++.|+ +++++
T Consensus 141 PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~ 193 (294)
T PRK14187 141 PCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSA 193 (294)
T ss_pred CcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCC
Confidence 57888875 4566789999999999999 57799999999999999987 66664
No 194
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=90.94 E-value=0.47 Score=47.29 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.-|+|-.+--+.+.++++|.+++..+|+|.|. |.+|+.+++.|..++.++.-+
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll 197 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELL 197 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEe
Confidence 35888888888888889999999999999997 999999999999888776544
No 195
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.93 E-value=0.31 Score=49.38 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=29.7
Q ss_pred CCCCCCCeEEEEccChHHHHHHHHH-HHCCCEEEE
Q 015361 247 GQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIA 280 (408)
Q Consensus 247 g~~l~g~rvaIqGfGnVG~~~a~~L-~~~GakVVa 280 (408)
+.++.|++|.|.|+|++|+.+|+.| ...|.+|++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~ 175 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA 175 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence 4468999999999999999999999 557889885
No 196
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=90.92 E-value=0.76 Score=47.39 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-...|..|+. ++|++.+.+++|++|+|+| ..-||.-++.+|.++++.|. ++.++
T Consensus 210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~ 264 (364)
T PLN02616 210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR 264 (364)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCC
Confidence 3468988865 5566779999999999999 57799999999999999887 66553
No 197
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=90.92 E-value=0.37 Score=48.68 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=29.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeec
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD 283 (408)
++|++|+|+|+|++|+..|+-|.+.|.+++...+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~ 34 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLR 34 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC
Confidence 5789999999999999999999999988763333
No 198
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.91 E-value=0.39 Score=45.16 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++.++|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 788999999999999999999999998656688876
No 199
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.86 E-value=0.67 Score=50.03 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=60.2
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc----cccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC 328 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell----~~~~ 328 (408)
-++.|.|+|++|+.+++.|.++|..++ +.|.+ .+.+.+.++..-.+. +-+ .++.+.| -.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~d----------~~~~~~~~~~g~~~i-~GD---~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIETS----------RTRVDELRERGIRAV-LGN---AANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEECC----------HHHHHHHHHCCCeEE-EcC---CCCHHHHHhcCcccc
Confidence 468999999999999999999999988 55553 444444443211110 001 1223333 2367
Q ss_pred cEEeeccCCCcccc---ccccc--cccEEEEecCCCCCCHHHHHHHHhCCCeE
Q 015361 329 DVLIPCALGGVLKR---ENAAD--VKAKFIIEAANHPTDPEADEILSKRGVTI 376 (408)
Q Consensus 329 DIliPaA~~~~I~~---~na~~--i~akiIvEgAN~p~T~eA~~iL~~rGI~v 376 (408)
|.++=+...+.-|. ..+.+ -.+++|+-.. +++..+.|++.|+..
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad~ 531 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGANQ 531 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCCE
Confidence 86665533221110 11111 2457777543 467778899988754
No 200
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.85 E-value=0.69 Score=46.18 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-.+|.+|++. ++++.+.+++|++|+|.| ...||.-++.+|.++++.|+ ++.++
T Consensus 137 ~PcTp~avi~----ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~ 190 (282)
T PRK14182 137 RPCTPAGVMR----MLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSR 190 (282)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 3578888765 456678999999999999 57799999999999999876 66553
No 201
>PRK14982 acyl-ACP reductase; Provisional
Probab=90.83 E-value=0.71 Score=47.25 Aligned_cols=115 Identities=20% Similarity=0.297 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHC-CC-EEEEeecCCCeEeCCCCCCHHHHHHhHhhc
Q 015361 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHER-GG-KVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (408)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~-Ga-kVVaVsD~~G~iydp~GLDi~~L~~~~~~~ 306 (408)
.|.+-....++.+.+.++.++++++|+|.|. |.+|+.+++.|.+. |. +++ +.+.+ .+.+.+...+.
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R~----------~~rl~~La~el 201 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVARQ----------QERLQELQAEL 201 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcCC----------HHHHHHHHHHh
Confidence 4555555677877888898999999999998 89999999999754 64 555 44443 22333322221
Q ss_pred CCcccCCCCeecCCCCcccccccEEeeccC--CC-ccccccccccccEEEEecCCCC-CCHH
Q 015361 307 GSLKDFDGGDSMEPSELLAHECDVLIPCAL--GG-VLKRENAADVKAKFIIEAANHP-TDPE 364 (408)
Q Consensus 307 g~l~~~~~~~~i~~~ell~~~~DIliPaA~--~~-~I~~~na~~i~akiIvEgAN~p-~T~e 364 (408)
..+...+-++.+ .++|+++=|+- .. .|+.+..+ +-.+|++.|.-. +.|+
T Consensus 202 ------~~~~i~~l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~ 254 (340)
T PRK14982 202 ------GGGKILSLEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTK 254 (340)
T ss_pred ------ccccHHhHHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCcc
Confidence 111111112233 26888887764 33 25665442 457888988754 4543
No 202
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=90.78 E-value=0.48 Score=44.77 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHH--HHCCCEEEEeecCC
Q 015361 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI--HERGGKVIAVSDIT 285 (408)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~ 285 (408)
||=|...++.+-+.+|.. ...+|+|.|.|++|+.+++.+ .+.|++++|+.|.+
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 455555555444456665 567999999999999999864 35789999999874
No 203
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=90.47 E-value=0.56 Score=47.27 Aligned_cols=94 Identities=22% Similarity=0.202 Sum_probs=56.9
Q ss_pred CCCeEEEEccChHHHHHHHHHH-HCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCccc-CCCCeecCCCCccc---
Q 015361 251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD-FDGGDSMEPSELLA--- 325 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~-~~~~~~i~~~ell~--- 325 (408)
+..+|+|+|.|++|...+..+. ..+.++++++|.+- + .+ -++..++.| +.. |. +-++++.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-----e---s~-gla~A~~~G-i~~~~~-----~ie~LL~~~~ 67 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-----E---SD-GLARARRLG-VATSAE-----GIDGLLAMPE 67 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-----h---hH-HHHHHHHcC-CCcccC-----CHHHHHhCcC
Confidence 4578999999999998776665 45799999998742 1 11 122233322 211 11 1234554
Q ss_pred -ccccEEeeccCCCcccccccccc---ccEEEEec--CCCC
Q 015361 326 -HECDVLIPCALGGVLKRENAADV---KAKFIIEA--ANHP 360 (408)
Q Consensus 326 -~~~DIliPaA~~~~I~~~na~~i---~akiIvEg--AN~p 360 (408)
.++|+++-|+ ++..+.+++.+. ++.+|.+- +++|
T Consensus 68 ~~dIDiVf~AT-~a~~H~e~a~~a~eaGk~VID~sPA~~~P 107 (302)
T PRK08300 68 FDDIDIVFDAT-SAGAHVRHAAKLREAGIRAIDLTPAAIGP 107 (302)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHHcCCeEEECCccccCC
Confidence 4689999885 445666666553 56666654 3445
No 204
>PRK06046 alanine dehydrogenase; Validated
Probab=90.38 E-value=2.7 Score=42.46 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=68.2
Q ss_pred CCCeEEEEccChHHHHHHHHHH-HCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccccc
Q 015361 251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC 328 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~ 328 (408)
.-++++|.|.|..|++.++.|. ..+.+.|.|.|.+ .+...+..++-..-.++ ..+.. +.++++. +
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~----------~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~--a 194 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT----------KSSAEKFVERMSSVVGC-DVTVAEDIEEACD--C 194 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC----------HHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--C
Confidence 3568999999999999998886 4578899888764 23333333221100000 01112 2245554 9
Q ss_pred cEEeeccCCC--ccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEE
Q 015361 329 DVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTIL 377 (408)
Q Consensus 329 DIliPaA~~~--~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vv 377 (408)
||++=|.... .+..+.. +-.+-+..=|++-|--.|.+..+-++.-+|+
T Consensus 195 DiVv~aTps~~P~~~~~~l-~~g~hV~~iGs~~p~~~El~~~~~~~a~vvv 244 (326)
T PRK06046 195 DILVTTTPSRKPVVKAEWI-KEGTHINAIGADAPGKQELDPEILLRAKVVV 244 (326)
T ss_pred CEEEEecCCCCcEecHHHc-CCCCEEEecCCCCCccccCCHHHHhCCcEEE
Confidence 9999886432 3444433 2356788889999976666655555554444
No 205
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.35 E-value=0.71 Score=50.53 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=67.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc----cccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC 328 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell----~~~~ 328 (408)
.+|+|.|+|.+|+.+++.|.++|..++ +.|. |.+.+.+.++. +.-.-|-+ .+..++| -.+|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GD---at~~~~L~~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLER----------DISAVNLMRKY-GYKVYYGD---ATQLELLRAAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhC-CCeEEEee---CCCHHHHHhcCCccC
Confidence 579999999999999999999999998 5565 34555444332 21111111 1233444 2378
Q ss_pred cEEeeccCCCcccc---cccccc--ccEEEEecCCCCCCHHHHHHHHhCCCe-EEcchh
Q 015361 329 DVLIPCALGGVLKR---ENAADV--KAKFIIEAANHPTDPEADEILSKRGVT-ILPDIY 381 (408)
Q Consensus 329 DIliPaA~~~~I~~---~na~~i--~akiIvEgAN~p~T~eA~~iL~~rGI~-vvPD~l 381 (408)
|.++=+.-....|. ..+++. +.++|+-.. +++..+.|++.|+. ++|+.+
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~ 520 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETF 520 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHH
Confidence 88887644332221 223332 567777554 45777889999985 556643
No 206
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=90.29 E-value=4.3 Score=41.54 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=27.5
Q ss_pred CeEEEEccChHHHHHHHHHHHC-CCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~-GakVVaVsD~ 284 (408)
.||+|.|||.+|+.+.+.+.+. ..+++++-|.
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~ 35 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP 35 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5899999999999999997754 5899988764
No 207
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.10 E-value=0.44 Score=44.94 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+.++|+|.|.|-+|+.+|+.|...|..-+.+.|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 778899999999999999999999998655588876
No 208
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=90.06 E-value=0.48 Score=48.15 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=30.5
Q ss_pred CCeEEEEccChHHHHHHHHHHHC-CCEEEEeecCC
Q 015361 252 DLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT 285 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~ 285 (408)
..||+|.|+||+|+..++.+.+. +..+|+|.|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 47999999999999999988764 89999999986
No 209
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.05 E-value=1.2 Score=45.22 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=36.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhh
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK 305 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~ 305 (408)
....+|+|.|.|-||.++|++..-.|++|. |-|. +++.|+.+...
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild~----------n~~rl~~ldd~ 210 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILDL----------NIDRLRQLDDL 210 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeE-EEec----------CHHHHhhhhHh
Confidence 455689999999999999999999999997 7675 46666665543
No 210
>PRK07877 hypothetical protein; Provisional
Probab=90.04 E-value=0.68 Score=51.89 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=61.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCC-EEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccc
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC 328 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~ 328 (408)
|+..+|+|.|.| +|+++|..|...|. .-+.+.|.+- ++..-|+.. + +.. ..+ +-++++ .-.+.+...+.
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~--ve~sNLnRq-~--~~~--~di-G~~Kv~-~a~~~l~~inp 174 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT--LELSNLNRV-P--AGV--FDL-GVNKAV-VAARRIAELDP 174 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE--Ecccccccc-c--CCh--hhc-ccHHHH-HHHHHHHHHCC
Confidence 788999999999 99999999999994 3333777642 222222210 0 000 000 000000 00112223333
Q ss_pred cEEeeccCCCcccccccccc--ccEEEEecCCCCCCH-HHHHHHHhCCCeEE
Q 015361 329 DVLIPCALGGVLKRENAADV--KAKFIIEAANHPTDP-EADEILSKRGVTIL 377 (408)
Q Consensus 329 DIliPaA~~~~I~~~na~~i--~akiIvEgAN~p~T~-eA~~iL~~rGI~vv 377 (408)
++=|.+ ...-|+++|++.+ ++.+|+++.-+.-|. ...+...++||.++
T Consensus 175 ~i~v~~-~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i 225 (722)
T PRK07877 175 YLPVEV-FTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVL 225 (722)
T ss_pred CCEEEE-EeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 333332 3334566777664 667777777665332 12234467788776
No 211
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=89.96 E-value=1.1 Score=45.38 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=44.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 222 GGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
=|..|-+..|+|--++ +. ...-+|.+|.|.|. |.||+-+-++-.-+|++|||++-++
T Consensus 131 lg~lGm~glTAy~Gf~---ei----~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~ 188 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAGFY---EI----CSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSK 188 (343)
T ss_pred hhccCCchhHHHHHHH---Hh----cCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCCh
Confidence 4566767777764433 33 34457899999994 9999999999888999999998885
No 212
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.84 E-value=0.78 Score=45.11 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|++|..+|..|...|..|+ +.|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~ 35 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDV 35 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeC
Confidence 589999999999999999999999887 5554
No 213
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.81 E-value=0.43 Score=48.62 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+.++|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 788999999999999999999999998777788876
No 214
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=89.77 E-value=0.96 Score=44.51 Aligned_cols=102 Identities=21% Similarity=0.270 Sum_probs=59.3
Q ss_pred EEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccccccEEeecc
Q 015361 257 IQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLIPCA 335 (408)
Q Consensus 257 IqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~DIliPaA 335 (408)
+.|.|++|+.+|+.|.+.|.+|+ +.|.+ .+++.+..+. + .... ++.+. -.+||+++-|-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-g-------~~~~~s~~~~-~~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVR-VFDLF----------PDAVEEAVAA-G-------AQAAASPAEA-AEGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHH-HhcCCEEEEeC
Confidence 46999999999999999999876 44543 2333333222 1 1111 22233 34689999886
Q ss_pred CCCcccc-------cccccc-ccEEEEecCCCC--CCHHHHHHHHhCCCeEEc
Q 015361 336 LGGVLKR-------ENAADV-KAKFIIEAANHP--TDPEADEILSKRGVTILP 378 (408)
Q Consensus 336 ~~~~I~~-------~na~~i-~akiIvEgAN~p--~T~eA~~iL~~rGI~vvP 378 (408)
....... .-...+ +-++|+.-.... ++.+..+.++++|+.++-
T Consensus 61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 5432211 112223 235667666543 244556778889998874
No 215
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.76 E-value=1.1 Score=43.84 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=43.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccEEe
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI 332 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DIli 332 (408)
++|+|+|.|++|+.++..|.+.|.+|++ .|.+ .+.+.+..+ .+.+... .+..+. ..+||++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~-~d~~----------~~~~~~a~~-~g~~~~~-----~~~~~~-~~~aDlVi 62 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYG-VSRR----------ESTCERAIE-RGLVDEA-----STDLSL-LKDCDLVI 62 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEE-EECC----------HHHHHHHHH-CCCcccc-----cCCHhH-hcCCCEEE
Confidence 3799999999999999999999998764 3442 233333222 2322211 111222 35799999
Q ss_pred eccCCCc
Q 015361 333 PCALGGV 339 (408)
Q Consensus 333 PaA~~~~ 339 (408)
-|.....
T Consensus 63 lavp~~~ 69 (279)
T PRK07417 63 LALPIGL 69 (279)
T ss_pred EcCCHHH
Confidence 9876544
No 216
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.70 E-value=1.3 Score=34.90 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=34.2
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHH
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHK 298 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~ 298 (408)
||+|+|.|.+|-.+|..|.+.|.+|+ +.+.+..+. ..+|.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence 68999999999999999999999987 667666555 5566553
No 217
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.70 E-value=0.93 Score=45.30 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHH--CCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE--RGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~--~GakVVaVsD~~ 285 (408)
-.+|..|++.. +++.|.+++|++++|.| ...||+-++.+|.+ +++.|. ++.++
T Consensus 138 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs~ 193 (284)
T PRK14193 138 LPCTPRGIVHL----LRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHTG 193 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCCC
Confidence 35888887655 45679999999999999 57899999999988 688876 66653
No 218
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.58 E-value=0.35 Score=51.86 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=28.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|+|.|.+|+..|..|...|+.|+ +.|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999997 66654
No 219
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=89.51 E-value=3.7 Score=43.52 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=27.7
Q ss_pred CeEEEEccChHHHHHHHHHHHC---CCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 284 (408)
.||+|-|||-+|+.+.|.+.+. ...||+|-|.
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~ 110 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 110 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence 6999999999999999987643 5899999774
No 220
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.44 E-value=0.37 Score=41.92 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=29.5
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
.+||+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999998766688865
No 221
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=89.31 E-value=0.32 Score=49.75 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=32.8
Q ss_pred hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEE
Q 015361 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIA 280 (408)
Q Consensus 246 ~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVa 280 (408)
+|.++.|||++|.|+|.+|+.+|+.+...|.++|+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence 57789999999999999999999999999999985
No 222
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.25 E-value=1.6 Score=42.07 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=41.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEE--EEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCccccccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKV--IAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD 329 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakV--VaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~D 329 (408)
+||.|.|+|++|+.+++.|.+.|..+ +.+.|. +.+.+.+..++. ++.+.. ++.++. .+||
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r----------~~~~~~~l~~~~------~~~~~~~~~~~~~-~~aD 63 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR----------NAQIAARLAERF------PKVRIAKDNQAVV-DRSD 63 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC----------CHHHHHHHHHHc------CCceEeCCHHHHH-HhCC
Confidence 37999999999999999998887533 334443 234444433322 112222 233343 3689
Q ss_pred EEeeccCCC
Q 015361 330 VLIPCALGG 338 (408)
Q Consensus 330 IliPaA~~~ 338 (408)
+++-|....
T Consensus 64 vVilav~p~ 72 (258)
T PRK06476 64 VVFLAVRPQ 72 (258)
T ss_pred EEEEEeCHH
Confidence 999887643
No 223
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.23 E-value=1.1 Score=44.92 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=42.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHC----CCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 285 (408)
-..|..|++.. +++.|.+++|++|+|.| ...||+-++.+|.++ ++.|+ ++.++
T Consensus 133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~ 190 (287)
T PRK14181 133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQ 190 (287)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCC
Confidence 35788887654 55679999999999999 577999999999988 67776 66653
No 224
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.22 E-value=1 Score=45.31 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHC----CCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 285 (408)
-.+|..|++. +++..+.+++|++|+|.| ...||+-++.+|.++ ++.|. ++.++
T Consensus 137 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~ 194 (297)
T PRK14167 137 KPCTPHGIQK----LLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSR 194 (297)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCC
Confidence 3578888765 556678999999999999 577999999999987 67665 66653
No 225
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=89.20 E-value=0.96 Score=46.38 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
...|..|++.. +++.+.+++|++|+|+| ..-||.-++.+|.++++.|. ++.+
T Consensus 194 ~PCTp~avi~L----L~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs 246 (345)
T PLN02897 194 VSCTPKGCVEL----LIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHA 246 (345)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcC
Confidence 46888887654 45679999999999999 57799999999999999886 5554
No 226
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.17 E-value=0.54 Score=44.89 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+.++|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678899999999999999999999998777788865
No 227
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.05 E-value=0.64 Score=48.24 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.0
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+++|+++.|.|.|..|..+|++|.+.|++|+ ++|.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~ 37 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK 37 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 4678999999999999999999999999987 56754
No 228
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.00 E-value=0.36 Score=51.76 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|+|.|.+|+.+|..|...|+.|+ +.|.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVL-LYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999997 55653
No 229
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=88.92 E-value=0.59 Score=48.23 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++..+|+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999998666788866
No 230
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.86 E-value=0.76 Score=47.23 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+++++|+|.|.|-+|+.+++.|...|.+-+.+.|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 788999999999999999999999998766688865
No 231
>PLN02712 arogenate dehydrogenase
Probab=88.85 E-value=0.7 Score=51.33 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=32.0
Q ss_pred hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 246 ~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
.+.++++++|+|+|+|++|+.+|+.|.+.|.+|+++
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~ 398 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAY 398 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEE
Confidence 466788999999999999999999999999988844
No 232
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=88.79 E-value=3 Score=43.59 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEcc-----------------ChHHHHHHHHHHHCCCEEEEee
Q 015361 248 QAIRDLTFVIQGF-----------------GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 248 ~~l~g~rvaIqGf-----------------GnVG~~~a~~L~~~GakVVaVs 282 (408)
.+++|++|.|.|. |.+|..+|+.|.++|++|+.++
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 5689999999987 8899999999999999998654
No 233
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=88.74 E-value=10 Score=40.51 Aligned_cols=52 Identities=33% Similarity=0.426 Sum_probs=38.0
Q ss_pred HHHHHHHHHH-HhCC--CCCCCeEEEEccChHHHHHHHHHHHC-----CCEEEEeecCCC
Q 015361 235 VVYATEALLA-EHGQ--AIRDLTFVIQGFGNVGSWAARLIHER-----GGKVIAVSDITG 286 (408)
Q Consensus 235 v~~~~~~~l~-~~g~--~l~g~rvaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~~G 286 (408)
+-.++++-|. ..+. ..+.+||+|-|||-+|+.++|.+.+. +.++|||-+..+
T Consensus 107 ~~~~~~~~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 107 VEAFVAEELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred HHHHHHHHHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 3445544444 2332 25688999999999999999998764 689999977654
No 234
>PRK08618 ornithine cyclodeaminase; Validated
Probab=88.71 E-value=3.7 Score=41.37 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=65.7
Q ss_pred CCCeEEEEccChHHHHHHHHHH-HCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCC-CeecCC-CCccccc
Q 015361 251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG-GDSMEP-SELLAHE 327 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~-~~~i~~-~ell~~~ 327 (408)
..++++|.|.|..|+..++.+. ..+++-|.|.|.+ .+...++.++-.. .++- ....++ ++.+ .+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~-~~ 192 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT----------FEKAYAFAQEIQS--KFNTEIYVVNSADEAI-EE 192 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC----------HHHHHHHHHHHHH--hcCCcEEEeCCHHHHH-hc
Confidence 5679999999999998887765 4688888888764 2333332221100 0110 111222 3333 48
Q ss_pred ccEEeeccCCC--ccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEE
Q 015361 328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTIL 377 (408)
Q Consensus 328 ~DIliPaA~~~--~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vv 377 (408)
+||++-|.... .++ +.. +-++-+++=|++.|--.|.+..+.++.-.++
T Consensus 193 aDiVi~aT~s~~p~i~-~~l-~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vv 242 (325)
T PRK08618 193 ADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSEAIARANKVV 242 (325)
T ss_pred CCEEEEccCCCCcchH-Hhc-CCCcEEEecCCCCcccccCCHHHHhhCCEEE
Confidence 99999886433 344 322 3467788999999865555544444443333
No 235
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.67 E-value=1.1 Score=44.90 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHH----CCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE----RGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~~ 285 (408)
-.+|.+|++. ++++.+.+++|++++|.| ...||+-++.+|.+ +++.|. +++++
T Consensus 137 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~ 194 (286)
T PRK14184 137 RPCTPAGVMT----LLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSR 194 (286)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCC
Confidence 3578887764 556679999999999999 57799999999998 788887 55553
No 236
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.64 E-value=0.43 Score=46.90 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|.|.|.+|+.+|..|.+.|.+|+ +.|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeCC
Confidence 479999999999999999999999987 44543
No 237
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.63 E-value=0.48 Score=46.63 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=27.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence 489999999999999999999999887 4454
No 238
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.62 E-value=1.1 Score=49.38 Aligned_cols=107 Identities=22% Similarity=0.242 Sum_probs=64.5
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc----ccc
Q 015361 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHE 327 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell----~~~ 327 (408)
..+|.|.|||.+|+.+++.|.+.|.+++. .|.+ .+.+.+.++. +.-.-|-+ .+..++| -.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvv-ID~d----------~~~v~~~~~~-g~~v~~GD---at~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTV-LDHD----------PDHIETLRKF-GMKVFYGD---ATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEE-EECC----------HHHHHHHHhc-CCeEEEEe---CCCHHHHHhcCCCc
Confidence 35899999999999999999999999884 4653 4444444332 21111111 1223344 226
Q ss_pred ccEEeeccCCCcccc---cccccc--ccEEEEecCCCCCCHHHHHHHHhCCCeEE
Q 015361 328 CDVLIPCALGGVLKR---ENAADV--KAKFIIEAANHPTDPEADEILSKRGVTIL 377 (408)
Q Consensus 328 ~DIliPaA~~~~I~~---~na~~i--~akiIvEgAN~p~T~eA~~iL~~rGI~vv 377 (408)
+|.++-|.-.+..|. ..+++. +.++|+-.. +++..+.|++.|+..+
T Consensus 465 A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKP 515 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEE
Confidence 888887754333332 223332 456776443 4566778889998644
No 239
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.55 E-value=0.4 Score=47.51 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=27.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|.+|+..|..|...|..|+ +-|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~ 36 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVL-VFET 36 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEE-EEEC
Confidence 389999999999999999999999987 5554
No 240
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.45 E-value=0.59 Score=47.23 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=29.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCC-EEEEeecCCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITG 286 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G 286 (408)
++.+||+|.|.|+||+.+|..+...|. . +.+.|.+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCC
Confidence 345799999999999999999988885 6 55888754
No 241
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.43 E-value=1.3 Score=39.64 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=41.5
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCe-----ecCC--CCcccc
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-----SMEP--SELLAH 326 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~-----~i~~--~ell~~ 326 (408)
+|+|.|.||.|..+|..|.+.|.+|. + |..+. +.+.+..+.+.....+++.+ .++. ++.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~-l-------~~~~~---~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVT-L-------WGRDE---EQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEE-E-------ETSCH---HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-T
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEE-E-------EeccH---HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-C
Confidence 68999999999999999999997776 4 33322 44444444443223333321 1221 1222 3
Q ss_pred cccEEeeccC
Q 015361 327 ECDVLIPCAL 336 (408)
Q Consensus 327 ~~DIliPaA~ 336 (408)
++|+++-|-.
T Consensus 69 ~ad~IiiavP 78 (157)
T PF01210_consen 69 DADIIIIAVP 78 (157)
T ss_dssp T-SEEEE-S-
T ss_pred cccEEEeccc
Confidence 7898887643
No 242
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.43 E-value=0.8 Score=48.19 Aligned_cols=40 Identities=30% Similarity=0.339 Sum_probs=34.0
Q ss_pred HhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 245 ~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
..+.++++++|+|.|.|..|..+|+.|.++|++|+ ++|.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~~ 48 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDDG 48 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 34566789999999999999999999999999976 66643
No 243
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.42 E-value=1.9 Score=44.69 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCc---cc
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL---LA 325 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~el---l~ 325 (408)
.+..+++.|.|+|.+|+.+++.|.+.|..++ +.|.+ .+.+.++.++...+.-+.+ ...+.+.+ --
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~~----------~~~~~~~~~~~~~~~~i~g-d~~~~~~L~~~~~ 295 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIERD----------PERAEELAEELPNTLVLHG-DGTDQELLEEEGI 295 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC----------HHHHHHHHHHCCCCeEEEC-CCCCHHHHHhcCC
Confidence 3567899999999999999999999999987 44543 3444444433211100000 01111112 12
Q ss_pred ccccEEeeccCCCccc---cccccccc-cEEEEecCCCCCCHHHHHHHHhCCCe--EEcchh
Q 015361 326 HECDVLIPCALGGVLK---RENAADVK-AKFIIEAANHPTDPEADEILSKRGVT--ILPDIY 381 (408)
Q Consensus 326 ~~~DIliPaA~~~~I~---~~na~~i~-akiIvEgAN~p~T~eA~~iL~~rGI~--vvPD~l 381 (408)
.++|.++-+.-....| ...+++++ .++|+... +++..++|+..|+- +.|..+
T Consensus 296 ~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~~vi~p~~~ 353 (453)
T PRK09496 296 DEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGIDIAISPRQA 353 (453)
T ss_pred ccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCCEEECHHHH
Confidence 3678887654322211 12223332 36777654 33456778888874 344443
No 244
>PLN02688 pyrroline-5-carboxylate reductase
Probab=88.32 E-value=1.7 Score=41.98 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.0
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC----EEE
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGG----KVI 279 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~Ga----kVV 279 (408)
+||.++|+|++|+.+++-|.+.|. +|+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~ 31 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS 31 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE
Confidence 479999999999999999999887 665
No 245
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=88.30 E-value=1.1 Score=44.59 Aligned_cols=53 Identities=30% Similarity=0.349 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccCh-HHHHHHHHHHHCCCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-..|-+|++. ++++.+.++.|++++|+|-+| ||+.++.+|...++.|. |+.+.
T Consensus 136 ~PCTp~gi~~----ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~ 189 (283)
T COG0190 136 LPCTPAGIMT----LLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSR 189 (283)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCC
Confidence 3688888765 556788999999999999755 89999999999999987 77764
No 246
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.30 E-value=1.3 Score=44.50 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=41.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHH----CCCEEEEeecC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE----RGGKVIAVSDI 284 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~ 284 (408)
-.+|..|+ -++++..+.+++|++|+|.| ...||+-++.+|.+ +++.|. ++.+
T Consensus 139 ~PcTp~ai----l~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs 195 (295)
T PRK14174 139 VSCTPYGI----LELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHS 195 (295)
T ss_pred CCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeC
Confidence 45888887 45666788999999999999 57799999999987 678776 5554
No 247
>PRK06153 hypothetical protein; Provisional
Probab=88.24 E-value=0.3 Score=50.81 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|++.+|+|.|.|-+|+++++.|.+.|.+=+.+.|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 678999999999999999999999998666677765
No 248
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.10 E-value=0.69 Score=48.92 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|++|+|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence 568999999999999999999999999987 78864
No 249
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.08 E-value=0.67 Score=43.11 Aligned_cols=120 Identities=25% Similarity=0.388 Sum_probs=56.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCC---------eE-eCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG---------AV-KNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSE 322 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G---------~i-ydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~e 322 (408)
++|+|.|.|-||..+|..|++.|.+|+++ |.+- .. +.+.| ++++++...+.+.+.- .++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~~~~~v~~l~~g~~p~~E~~--l~~ll~~~~~~~~l~~------t~~~~ 71 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DIDEEKVEALNNGELPIYEPG--LDELLKENVSAGRLRA------TTDIE 71 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE--S-HHHHHHHHTTSSSS-CTT--HHHHHHHHHHTTSEEE------ESEHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE-eCChHHHHHHhhccccccccc--hhhhhccccccccchh------hhhhh
Confidence 58999999999999999999999999965 5431 11 11222 3344433322222211 11111
Q ss_pred cccccccEEeeccCCCcccccccc----------cc------ccEEEEecCCCC-CCH-HHHHHHHhCC-------CeEE
Q 015361 323 LLAHECDVLIPCALGGVLKRENAA----------DV------KAKFIIEAANHP-TDP-EADEILSKRG-------VTIL 377 (408)
Q Consensus 323 ll~~~~DIliPaA~~~~I~~~na~----------~i------~akiIvEgAN~p-~T~-eA~~iL~~rG-------I~vv 377 (408)
-.-.+||+++=|-. ...++++.. .+ .+-+|.|..=.| +|. ....+|++.+ +.+.
T Consensus 72 ~ai~~adv~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~ 150 (185)
T PF03721_consen 72 EAIKDADVVFICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYS 150 (185)
T ss_dssp HHHHH-SEEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred hhhhccceEEEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEEC
Confidence 11247888887743 222222211 11 345566665555 455 3557887655 6788
Q ss_pred cchhc
Q 015361 378 PDIYA 382 (408)
Q Consensus 378 PD~la 382 (408)
|+++.
T Consensus 151 PErl~ 155 (185)
T PF03721_consen 151 PERLR 155 (185)
T ss_dssp -----
T ss_pred CCccC
Confidence 98876
No 250
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.85 E-value=0.69 Score=44.32 Aligned_cols=114 Identities=24% Similarity=0.343 Sum_probs=64.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc----cccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC 328 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell----~~~~ 328 (408)
++++|.|.|.||+.+|+.|.+.|..|+.| |.+ .+.+.++....-...-+-+ . -+..+.| -.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-d~d----------~~~~~~~~~~~~~~~~v~g-d-~t~~~~L~~agi~~a 67 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-DRD----------EERVEEFLADELDTHVVIG-D-ATDEDVLEEAGIDDA 67 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEE-EcC----------HHHHHHHhhhhcceEEEEe-c-CCCHHHHHhcCCCcC
Confidence 58999999999999999999999999965 432 2333332221111100000 0 0122233 2378
Q ss_pred cEEeeccCCCcccc---ccccc-cccEEEEecCCCCCCHHHHHHHHhCC--CeEEcchhc
Q 015361 329 DVLIPCALGGVLKR---ENAAD-VKAKFIIEAANHPTDPEADEILSKRG--VTILPDIYA 382 (408)
Q Consensus 329 DIliPaA~~~~I~~---~na~~-i~akiIvEgAN~p~T~eA~~iL~~rG--I~vvPD~la 382 (408)
|+++=+...+.+|. ..+.+ ++.+-|+-=++ +++..++|++-| ..+.|...+
T Consensus 68 D~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 68 DAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred CEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence 99998866655442 12222 33333332222 456678888888 455566544
No 251
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.77 E-value=1.4 Score=44.35 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=42.3
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHC----CCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 285 (408)
-.+|..|+... |++.|.+++|++|+|.| ...||+-++.+|.++ ++.|. ++.++
T Consensus 141 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~ 198 (297)
T PRK14168 141 LPCTPAGIQEM----LVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR 198 (297)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC
Confidence 35788887654 45679999999999999 578999999999988 56665 66553
No 252
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=87.76 E-value=0.61 Score=47.90 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=27.8
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
...+|+|+||||.|+..|+.|.+.|..+++-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~h 81 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICH 81 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEec
Confidence 4578999999999999999999999999843
No 253
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=87.68 E-value=0.55 Score=46.00 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=31.0
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++..+|+|.|.|-||+++++.|.+.|..=+.+.|-+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 677899999999999999999999997666576654
No 254
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.67 E-value=0.73 Score=44.65 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+++.+|+|.|.|-+|+.+|+.|...|..-+.+.|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999998777787865
No 255
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=87.62 E-value=2.7 Score=36.13 Aligned_cols=99 Identities=20% Similarity=0.349 Sum_probs=54.3
Q ss_pred CeEEEEc----cChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccc
Q 015361 253 LTFVIQG----FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC 328 (408)
Q Consensus 253 ~rvaIqG----fGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~ 328 (408)
++|||.| -++.|..+.+.|.+.|++|+.|.-..+.+. .+.-|+. + +| .-.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------------G~~~y~s---l--~e-~p~~i 56 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------------GIKCYPS---L--AE-IPEPI 56 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------------TEE-BSS---G--GG-CSST-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------------cEEeecc---c--cC-CCCCC
Confidence 5899999 599999999999999999998744332220 1112221 1 22 14566
Q ss_pred cEEeeccCCCc----cccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEE-c
Q 015361 329 DVLIPCALGGV----LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTIL-P 378 (408)
Q Consensus 329 DIliPaA~~~~----I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vv-P 378 (408)
|+.+-|..... +.+--+..+++=++.-| -..+++.+.+++.|+.++ |
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEES
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeC
Confidence 77776643222 12111122344444444 456788899999999997 5
No 256
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=87.57 E-value=0.5 Score=48.28 Aligned_cols=120 Identities=28% Similarity=0.345 Sum_probs=64.2
Q ss_pred EEEEccChHHHHHHHHHHHCCC--EEEEeecCCCeEeCCCCCCHHHHHHhHhhc--CCcccCCCCeecCC-CCc--cccc
Q 015361 255 FVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDKT--GSLKDFDGGDSMEP-SEL--LAHE 327 (408)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iydp~GLDi~~L~~~~~~~--g~l~~~~~~~~i~~-~el--l~~~ 327 (408)
|.|.|.|.||+.+++.|.+..- +|+ |+|.+ .+++.+..++. ..+... .. .+.+ +++ +-.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r~----------~~~~~~~~~~~~~~~~~~~-~~-d~~~~~~l~~~~~~ 67 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADRN----------PEKAERLAEKLLGDRVEAV-QV-DVNDPESLAELLRG 67 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEESS----------HHHHHHHHT--TTTTEEEE-E---TTTHHHHHHHHTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEECC----------HHHHHHHHhhccccceeEE-EE-ecCCHHHHHHHHhc
Confidence 6789999999999999998874 454 88874 56666555431 111110 00 1122 222 2348
Q ss_pred ccEEeeccCCCcccccccc---ccccEEEEecCCCCCCHH---HHHHHHhCCCeEEcchhcccccchhhH
Q 015361 328 CDVLIPCALGGVLKRENAA---DVKAKFIIEAANHPTDPE---ADEILSKRGVTILPDIYANSGGVTVSY 391 (408)
Q Consensus 328 ~DIliPaA~~~~I~~~na~---~i~akiIvEgAN~p~T~e---A~~iL~~rGI~vvPD~laNaGGVivSy 391 (408)
||++|.|+... .+..-+. +.++.+|= -+. .+++ -++..+++|+.++++.=.+.|=.-.-.
T Consensus 68 ~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a 133 (386)
T PF03435_consen 68 CDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLA 133 (386)
T ss_dssp SSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHH
T ss_pred CCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccchHHHHH
Confidence 89999998655 3322222 23666665 111 1222 235677899999988877776553333
No 257
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.53 E-value=0.73 Score=44.56 Aligned_cols=36 Identities=31% Similarity=0.628 Sum_probs=31.1
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+..+|+|.|.|.||+++++.|...|..=+.+.|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 577899999999999999999999997555577754
No 258
>PRK05717 oxidoreductase; Validated
Probab=87.47 E-value=1.1 Score=42.37 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.+++|++++|.|. |.+|+++|+.|.++|++|+.+
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 4688999999995 999999999999999999844
No 259
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.33 E-value=1.6 Score=43.85 Aligned_cols=53 Identities=25% Similarity=0.239 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-cChHHHHHHHHHHHC----CCEEEEeecCC
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT 285 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 285 (408)
-.+|..|++. ++++.+.+++|++|+|.| ..-||+-++.+|.++ ++.|+ ++.++
T Consensus 137 ~PcTp~av~~----lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~ 194 (293)
T PRK14185 137 VSATPNGILE----LLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSR 194 (293)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCC
Confidence 4688888765 455678999999999999 577999999999988 57766 66554
No 260
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.18 E-value=1 Score=46.84 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=31.9
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++++++|+|.|.|.+|..+|+.|.+.|++|+ ++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 4688999999999999999999999999987 55654
No 261
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.65 E-value=0.88 Score=46.39 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+.++|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 678899999999999999999999998666688865
No 262
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.60 E-value=0.94 Score=45.95 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|+|.|.+|+..|..+...|+.|+ +.|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeC
Confidence 589999999999999999999999998 5554
No 263
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.56 E-value=0.91 Score=43.13 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 788999999999999999999999998766688865
No 264
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=86.45 E-value=1.4 Score=43.50 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=32.5
Q ss_pred CCCeEEEEccChHHHHHHHHHHHC------C---CEEEEeecCCCeEeCCC
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHER------G---GKVIAVSDITGAVKNAD 292 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~------G---akVVaVsD~~G~iydp~ 292 (408)
+...|++.|+|+||+++...+... + ++||+|+|+.+.+...|
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD 52 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKD 52 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccc
Confidence 345799999999999998766432 2 79999999988776443
No 265
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.44 E-value=0.79 Score=43.00 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++.++|.|.|.|.+|+.+++.|...|.+-+.+.|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 678899999999999999999999998877788765
No 266
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=86.43 E-value=0.37 Score=51.19 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEE
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVV 279 (408)
|+|++|+|.|+|+.|+.-|.-|...|.+|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 899999999999999988888888898887
No 267
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=86.28 E-value=0.83 Score=46.13 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
-++|+|.|.|.+|+..|..++..|+.|+ +.|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceE-EEeCC
Confidence 4689999999999999999988778887 77765
No 268
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.24 E-value=2.6 Score=41.29 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=22.8
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCC
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERG 275 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~G 275 (408)
+.++|.++|.|++|+.+++-|.+.|
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC
Confidence 4579999999999999999999887
No 269
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=86.21 E-value=2 Score=42.64 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=66.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC---EEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccccccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD 329 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~D 329 (408)
+++.+.|+||+|+.++.-|.+.|. .-|-|++.+ .+++.+..++ |+.. ..++.+-+..++|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~----------~e~~~~l~~~------~g~~-~~~~~~~~~~~ad 64 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS----------EEKRAALAAE------YGVV-TTTDNQEAVEEAD 64 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC----------HHHHHHHHHH------cCCc-ccCcHHHHHhhCC
Confidence 579999999999999999999882 334477764 3344334433 3211 1233344556799
Q ss_pred EEeeccCCCcccccccccc----ccEEEEecCCCCCCHHHHHHHHhCC-CeEEcchhcccc
Q 015361 330 VLIPCALGGVLKRENAADV----KAKFIIEAANHPTDPEADEILSKRG-VTILPDIYANSG 385 (408)
Q Consensus 330 IliPaA~~~~I~~~na~~i----~akiIvEgAN~p~T~eA~~iL~~rG-I~vvPD~laNaG 385 (408)
+++-|--+..+ ++...++ +-|+|+--|=+-....-.+.|-+.. +.++|...+-.|
T Consensus 65 vv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg 124 (266)
T COG0345 65 VVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVG 124 (266)
T ss_pred EEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHc
Confidence 99998554332 2222333 3456666555444344444553222 467777655444
No 270
>PLN02256 arogenate dehydrogenase
Probab=86.07 E-value=1.8 Score=43.53 Aligned_cols=33 Identities=36% Similarity=0.607 Sum_probs=29.1
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
+.++++|+|+|+|++|+.+++.|.+.|.+|+++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~ 65 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLAT 65 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence 347789999999999999999999999888854
No 271
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=86.04 E-value=5 Score=39.55 Aligned_cols=32 Identities=34% Similarity=0.350 Sum_probs=28.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCE-EEEe
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGK-VIAV 281 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~Gak-VVaV 281 (408)
..|.+|+|.|.|.||..+++++...|++ |+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~ 194 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGV 194 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3589999999999999999999999999 8754
No 272
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.01 E-value=1.2 Score=44.37 Aligned_cols=34 Identities=32% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++++|+|.|.|++|+.+|+.|.+.|.+|+ +.|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 56799999999999999999999999987 55553
No 273
>PRK04148 hypothetical protein; Provisional
Probab=86.00 E-value=1.6 Score=38.97 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
.++++++++|.| -|..+|+.|.+.|..|+|+ |.+
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaI-Di~ 48 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVI-DIN 48 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEE-ECC
Confidence 367899999999 8888999999999999964 653
No 274
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=85.90 E-value=7.6 Score=39.91 Aligned_cols=32 Identities=34% Similarity=0.340 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHHC-CCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~-GakVVaVsD~ 284 (408)
.||+|-|||-+|+.+.|.+.+. ...||+|-|.
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC
Confidence 5899999999999999997654 6899999873
No 275
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.89 E-value=2 Score=44.48 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=27.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|+|++|+.+++.|.+.|..++.+ |.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vi-d~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVI-DT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE-EC
Confidence 47999999999999999999999999844 44
No 276
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=85.73 E-value=5 Score=39.64 Aligned_cols=111 Identities=23% Similarity=0.253 Sum_probs=62.8
Q ss_pred CCCeEEEEccChHHH-HHHHHHHHCC--CEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccccc
Q 015361 251 RDLTFVIQGFGNVGS-WAARLIHERG--GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~-~~a~~L~~~G--akVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~ 327 (408)
+-.||+|+|.|+.+. ..+..+.+.+ +.+++++|.+ .+.+.+..++.+--..| -+-+++|+.+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~----------~~~a~~~a~~~~~~~~~-----~~~~~ll~~~ 66 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD----------PERAEAFAEEFGIAKAY-----TDLEELLADP 66 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCC
Confidence 346899999997764 4667777665 6999999985 45555555554321112 2345667554
Q ss_pred -ccEEeeccCCCccccccccc---cccEEEEecCCCCCCHHHHH---HHHhCCCeEE
Q 015361 328 -CDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADE---ILSKRGVTIL 377 (408)
Q Consensus 328 -~DIliPaA~~~~I~~~na~~---i~akiIvEgAN~p~T~eA~~---iL~~rGI~vv 377 (408)
+|+++=| +++..+.+-+.+ -+.-++||=-=..+..|+++ ..+++|+.+.
T Consensus 67 ~iD~V~Ia-tp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 67 DIDAVYIA-TPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred CCCEEEEc-CCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 7877776 334444443322 24456666432223345553 2345555443
No 277
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.71 E-value=2.4 Score=42.37 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=29.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEee
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (408)
..|.+|+|+|.|.||..+++++...|++|+++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 468899999999999999999999999988653
No 278
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.70 E-value=1 Score=42.30 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++..+|.|.|.|.+|+.+++.|...|.+=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 677899999999999999999999998877788865
No 279
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=85.42 E-value=1.5 Score=41.01 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+++|+++.|.|. |.+|+.+++.|.++|++|+.+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 478999999996 8999999999999999998654
No 280
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=85.41 E-value=3.1 Score=36.19 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHH-hCCCCCCCeEEEEc--------cChHHHHHHHHHHHCCCEEEEeecCCCeEe
Q 015361 223 GSLGREAATGRGVVYATEALLAE-HGQAIRDLTFVIQG--------FGNVGSWAARLIHERGGKVIAVSDITGAVK 289 (408)
Q Consensus 223 Gs~gr~~aTg~Gv~~~~~~~l~~-~g~~l~g~rvaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~iy 289 (408)
|-.|+...|-|....+.+.+.+. ....++...|-|-| .|.-...+.+-|.+.|.+|+-|-|.+..-+
T Consensus 36 g~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiPh 111 (114)
T TIGR03628 36 VKADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPH 111 (114)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 33567788999998888888773 34557788999999 677778888999999999999999765433
No 281
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.39 E-value=2.6 Score=41.53 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=30.5
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.++.+|+|.|.|.||..+++++...|+++|.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 36789999999999999999999999997767665
No 282
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.29 E-value=2.2 Score=41.90 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=62.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCC----CEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCccccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE 327 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~ 327 (408)
.+|+|.|.|++|+.+++.|.+.| .+|+.+..+. .+.+.....+ ++..... +..+++ .+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~----------~~~~~~l~~~------~~~~~~~~~~~e~~-~~ 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK----------NEHFNQLYDK------YPTVELADNEAEIF-TK 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc----------HHHHHHHHHH------cCCeEEeCCHHHHH-hh
Confidence 47999999999999999999887 5666443321 1222222221 1111111 222333 48
Q ss_pred ccEEeeccCCCcccccccc----ccc-cEEEEecCCCCCCHHHHHHHHhCC-CeEEcchhc
Q 015361 328 CDVLIPCALGGVLKRENAA----DVK-AKFIIEAANHPTDPEADEILSKRG-VTILPDIYA 382 (408)
Q Consensus 328 ~DIliPaA~~~~I~~~na~----~i~-akiIvEgAN~p~T~eA~~iL~~rG-I~vvPD~la 382 (408)
+|++|-|.....+. +-+. .++ -+.|+--+|+-...+-.+.|.... |.++|-.-+
T Consensus 65 aDvVilavpp~~~~-~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~ 124 (277)
T PRK06928 65 CDHSFICVPPLAVL-PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTS 124 (277)
T ss_pred CCEEEEecCHHHHH-HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHH
Confidence 99999886544322 2222 222 246777888766566666664322 366775443
No 283
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.23 E-value=1.2 Score=46.69 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+.+++|.|.|+|.-|..+|++|.+.|++|. ++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence 568899999999999999999999999876 68864
No 284
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=85.15 E-value=1.7 Score=43.83 Aligned_cols=66 Identities=24% Similarity=0.278 Sum_probs=48.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccccccc
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD 329 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~D 329 (408)
...++|-.+|.||+|++.+.-|...|++|+ |-| .+.++..++.++...+.+-| .|+ ..+||
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~d----------r~~~k~~~f~~~Ga~v~~sP-------aeV-ae~sD 93 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYD----------RTKDKCKEFQEAGARVANSP-------AEV-AEDSD 93 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEE-EEe----------CcHHHHHHHHHhchhhhCCH-------HHH-HhhcC
Confidence 356789999999999999999999999998 555 35677777777666665432 222 23666
Q ss_pred EEeec
Q 015361 330 VLIPC 334 (408)
Q Consensus 330 IliPa 334 (408)
++|-|
T Consensus 94 vvitm 98 (327)
T KOG0409|consen 94 VVITM 98 (327)
T ss_pred EEEEE
Confidence 66655
No 285
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.10 E-value=2.9 Score=41.13 Aligned_cols=111 Identities=16% Similarity=0.269 Sum_probs=61.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC----EEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCccccc
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGG----KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE 327 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~ 327 (408)
++|.++|.||+|+.+++-|.+.|. .|+ ++|.+ .+.+.+..++.+ + +.. ++.++. .+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~r~----------~~~~~~l~~~~g-~------~~~~~~~e~~-~~ 63 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSDLN----------VSNLKNASDKYG-I------TITTNNNEVA-NS 63 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEE-EECCC----------HHHHHHHHHhcC-c------EEeCCcHHHH-hh
Confidence 479999999999999999998874 343 44542 344444333222 1 122 233343 48
Q ss_pred ccEEeeccCCCcccc---cccccccc-EEEEecCCCCCCHHHHHHHHh--CCCeEEcchhc
Q 015361 328 CDVLIPCALGGVLKR---ENAADVKA-KFIIEAANHPTDPEADEILSK--RGVTILPDIYA 382 (408)
Q Consensus 328 ~DIliPaA~~~~I~~---~na~~i~a-kiIvEgAN~p~T~eA~~iL~~--rGI~vvPD~la 382 (408)
|||+|-|-....+.. +..+.++. ++|+.-+-+-...+-.+.|.. +=+.++|-.-+
T Consensus 64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~ 124 (272)
T PRK12491 64 ADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPV 124 (272)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHH
Confidence 899998865433221 11111222 466666665544444455532 22456665544
No 286
>PRK06138 short chain dehydrogenase; Provisional
Probab=85.04 E-value=1.6 Score=40.75 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+++++++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 478899999996 9999999999999999998654
No 287
>PRK07060 short chain dehydrogenase; Provisional
Probab=84.94 E-value=1.7 Score=40.34 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.++++++++|.|. |.+|+.+++.|.++|++|+.+
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~ 39 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAA 39 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEE
Confidence 4578899999997 899999999999999998854
No 288
>PRK08628 short chain dehydrogenase; Provisional
Probab=84.81 E-value=1.6 Score=41.22 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEe
Q 015361 247 GQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 247 g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (408)
+.+++|+++.|.| .|.+|+.+++.|.++|++++.+
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 4578999999999 4899999999999999998854
No 289
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.80 E-value=2.9 Score=42.49 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=29.0
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+.+|+|.|.|.+|.-++..+...|+..|-++|.+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 3399999999999999999999997777677864
No 290
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.69 E-value=1.6 Score=40.47 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeec
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (408)
.+++++++|.| .|.+|+++++.|.++|++|+.++-
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 36788999999 599999999999999999986543
No 291
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=84.61 E-value=2.9 Score=42.21 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
..|.+|+|.|.|.||..+++++..+|++|+++.++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46889999999999999999999999998866543
No 292
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.54 E-value=3.2 Score=40.92 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|++|+.++..|.+.|..|. +.|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEEC
Confidence 479999999999999999999998875 5454
No 293
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.53 E-value=1.6 Score=45.43 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++++++.|.|.|..|..+|++|.++|++|+ ++|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 578899999999999999999999999987 56754
No 294
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.39 E-value=1.9 Score=39.95 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
++++++|.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~ 35 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCIN 35 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999996 889999999999999999854
No 295
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=84.36 E-value=9.4 Score=38.55 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=65.3
Q ss_pred CCCeEEEEccChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCC-CCeec-CCCCccccc
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD-GGDSM-EPSELLAHE 327 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~-~~~~i-~~~ell~~~ 327 (408)
.-++++|.|.|+.|++-++.|.. ...+-|.|.|.+ .+...++.++-. .+. ..... +.++.+ .+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~----------~~~~~~~~~~~~---~~g~~v~~~~~~~eav-~~ 192 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT----------PSTREKFALRAS---DYEVPVRAATDPREAV-EG 192 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC----------HHHHHHHHHHHH---hhCCcEEEeCCHHHHh-cc
Confidence 45789999999999997777654 334555566653 333333322211 111 11112 334444 48
Q ss_pred ccEEeeccCCC--ccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcc
Q 015361 328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPD 379 (408)
Q Consensus 328 ~DIliPaA~~~--~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD 379 (408)
|||++=|.... .+..+.. +-++-+.+=|++.|-..|.+..+.++.- |+-|
T Consensus 193 aDiVitaT~s~~P~~~~~~l-~~g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD 244 (325)
T TIGR02371 193 CDILVTTTPSRKPVVKADWV-SEGTHINAIGADAPGKQELDPEILKNAK-IFVD 244 (325)
T ss_pred CCEEEEecCCCCcEecHHHc-CCCCEEEecCCCCcccccCCHHHHhcCc-EEEC
Confidence 99999876432 3443333 3367788899999977676654445543 3345
No 296
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.36 E-value=1.5 Score=38.28 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=27.4
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+|+|.|.|.+|+.+++.|...|.+=+.+.|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998655576654
No 297
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.33 E-value=6.8 Score=39.50 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCC-EEEEe
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGG-KVIAV 281 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~Ga-kVVaV 281 (408)
.|.+|+|.|.|.+|..+++++..+|+ +|+++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~ 222 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAV 222 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence 57899999999999999999999999 57644
No 298
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.28 E-value=0.99 Score=46.59 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=67.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCe-e---c-CCCCcc---
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-S---M-EPSELL--- 324 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~-~---i-~~~ell--- 324 (408)
.++.+.|.+-+|++++.-..++|+.|.+ ||..==-+++.++...+..++.+...-+ . + .|..++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~--------yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCA--------YNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEE--------eccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEe
Confidence 5788999999999999999999999863 4433223555555544444454422111 0 1 111111
Q ss_pred --cccccEEeeccCCCccccccccccccEEEEecCCCCC--CHHHHHHHHhCCCeEE
Q 015361 325 --AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPT--DPEADEILSKRGVTIL 377 (408)
Q Consensus 325 --~~~~DIliPaA~~~~I~~~na~~i~akiIvEgAN~p~--T~eA~~iL~~rGI~vv 377 (408)
..++|.+|..-.+-.- +--+|++|.|.-. |..--+.|.++||+++
T Consensus 79 kAG~pVD~~I~~L~p~Le--------kgDiIIDGGNs~y~dT~RR~~el~k~Gilfv 127 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLE--------KGDIIIDGGNSEYQDTERRCRELAKKGILFV 127 (487)
T ss_pred eCCCcHHHHHHHHHhhcC--------CCCEEEeCCcccCcchHHHHHHHHhcCcEEE
Confidence 3355665554222211 3458999999864 5555578999999987
No 299
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=84.24 E-value=3.8 Score=36.52 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=53.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHH-hCCCCCCCeEEEEc--------cChHHHHHHHHHHHCCCEEEEeecCCCeEe
Q 015361 223 GSLGREAATGRGVVYATEALLAE-HGQAIRDLTFVIQG--------FGNVGSWAARLIHERGGKVIAVSDITGAVK 289 (408)
Q Consensus 223 Gs~gr~~aTg~Gv~~~~~~~l~~-~g~~l~g~rvaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~iy 289 (408)
|-.|+...|-|....+++.+.+. ....++...|-|-| .|.-...+.+.|...|.+|+.|-|.+..-+
T Consensus 43 g~kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPh 118 (132)
T PRK09607 43 VKADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPH 118 (132)
T ss_pred eeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 33466788999988888888763 34567888999999 677778888999999999999999765444
No 300
>PLN02858 fructose-bisphosphate aldolase
Probab=84.20 E-value=3.4 Score=49.67 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=65.6
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecC-CCCccccccc
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME-PSELLAHECD 329 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~-~~ell~~~~D 329 (408)
...+|.++|+|++|+.+|+-|.+.|+.|. +-|.+ .++..+..+.. +...+ +.++ ...||
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~dr~----------~~~~~~l~~~G--------a~~~~s~~e~-a~~ad 62 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFEIS----------TPLMEKFCELG--------GHRCDSPAEA-AKDAA 62 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcC--------CeecCCHHHH-HhcCC
Confidence 35689999999999999999999999986 44543 34444444332 22222 2222 34689
Q ss_pred EEeeccCCCcccccc-------cccc-ccEEEEecC-CCC-CCHHHHHHHHhCC--CeEE
Q 015361 330 VLIPCALGGVLKREN-------AADV-KAKFIIEAA-NHP-TDPEADEILSKRG--VTIL 377 (408)
Q Consensus 330 IliPaA~~~~I~~~n-------a~~i-~akiIvEgA-N~p-~T~eA~~iL~~rG--I~vv 377 (408)
++|-|-.......+. +..+ .-++|++-. ..| ++.+..+.+.++| +.++
T Consensus 63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l 122 (1378)
T PLN02858 63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV 122 (1378)
T ss_pred EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 999886433222211 1222 224666554 445 4566777899999 7665
No 301
>PRK12742 oxidoreductase; Provisional
Probab=84.16 E-value=5.5 Score=36.80 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 367899999995 999999999999999998854
No 302
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.15 E-value=1.9 Score=40.71 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence 478999999995 9999999999999999988 4454
No 303
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=84.11 E-value=2.2 Score=39.36 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.++++++.|.|. |.+|+++++.|.+.|++|+.+...
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 467889999995 999999999999999999756543
No 304
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=84.11 E-value=3 Score=44.62 Aligned_cols=31 Identities=26% Similarity=0.101 Sum_probs=27.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|+|.|++|+..|..|...|..|+ +.|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~-v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA-VFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeC
Confidence 489999999999999999999999887 5554
No 305
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.05 E-value=7 Score=40.96 Aligned_cols=119 Identities=20% Similarity=0.295 Sum_probs=69.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCC-----------eEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG-----------AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPS 321 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G-----------~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ 321 (408)
+||+|.|.|=||...+-.|.+.|..||+| |.+- -||+|. +++|++.....|++. ..++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~v-Did~~KV~~ln~g~~PI~Epg---Le~ll~~~~~~gRl~------fTtd~ 70 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCV-DIDESKVELLNKGISPIYEPG---LEELLKENLASGRLR------FTTDY 70 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHhCCCCCCcCcc---HHHHHHhccccCcEE------EEcCH
Confidence 58999999999999999999999999954 5431 233321 334443332222221 11111
Q ss_pred CcccccccEEeeccCCCcccccc----------ccc----c-ccEEEEecCCCC--CCHHHHHHHHhCC------CeEEc
Q 015361 322 ELLAHECDVLIPCALGGVLKREN----------AAD----V-KAKFIIEAANHP--TDPEADEILSKRG------VTILP 378 (408)
Q Consensus 322 ell~~~~DIliPaA~~~~I~~~n----------a~~----i-~akiIvEgAN~p--~T~eA~~iL~~rG------I~vvP 378 (408)
+---.++|+.+-|-....- +++ |+. + +.++||-=.--| +|.+-.+.+.+.. |..-|
T Consensus 71 ~~a~~~adv~fIavgTP~~-~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NP 149 (414)
T COG1004 71 EEAVKDADVVFIAVGTPPD-EDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNP 149 (414)
T ss_pred HHHHhcCCEEEEEcCCCCC-CCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecCh
Confidence 1112367888877543322 122 111 1 337777777777 4666677666655 77777
Q ss_pred chhc
Q 015361 379 DIYA 382 (408)
Q Consensus 379 D~la 382 (408)
.||-
T Consensus 150 EFLR 153 (414)
T COG1004 150 EFLR 153 (414)
T ss_pred HHhc
Confidence 7764
No 306
>PLN02858 fructose-bisphosphate aldolase
Probab=84.01 E-value=3.4 Score=49.65 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=62.8
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcccccccE
Q 015361 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDV 330 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell~~~~DI 330 (408)
.++|.++|+|++|..+|+-|...|++|+ +.|.+ .+++.+..+. + +... ++.++ ..+||+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-G-------a~~~~s~~e~-~~~aDv 383 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYDVY----------KPTLVRFENA-G-------GLAGNSPAEV-AKDVDV 383 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHH-HhcCCE
Confidence 3789999999999999999999999886 44543 2333333322 1 1111 22233 347899
Q ss_pred EeeccCCC-----ccccc--ccccc-ccEEEEecCC-CC-CCHHHHHHHHh--CCCeEE
Q 015361 331 LIPCALGG-----VLKRE--NAADV-KAKFIIEAAN-HP-TDPEADEILSK--RGVTIL 377 (408)
Q Consensus 331 liPaA~~~-----~I~~~--na~~i-~akiIvEgAN-~p-~T~eA~~iL~~--rGI~vv 377 (408)
++-|-... ++..+ -...+ .-++|++-.. .| ++.+..+.+++ +|+.++
T Consensus 384 Vi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l 442 (1378)
T PLN02858 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV 442 (1378)
T ss_pred EEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE
Confidence 99775422 22111 11222 2346665544 34 34566677888 898876
No 307
>PRK12828 short chain dehydrogenase; Provisional
Probab=84.00 E-value=1.9 Score=39.61 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~ 37 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALI 37 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEE
Confidence 467899999995 999999999999999998754
No 308
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=83.97 E-value=1 Score=37.09 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=28.7
Q ss_pred CCeEEEEccChHHHHHHH-HHHHCCCEEEEeecCCC
Q 015361 252 DLTFVIQGFGNVGSWAAR-LIHERGGKVIAVSDITG 286 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~-~L~~~GakVVaVsD~~G 286 (408)
..+|+|+|.|+.|+..+. .+...|++++++.|.+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~ 38 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP 38 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence 468999999999998873 34578999999999753
No 309
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.95 E-value=2 Score=39.99 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~-~r 37 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVT-DR 37 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 467899999995 999999999999999998754 44
No 310
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.95 E-value=3.2 Score=39.96 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=21.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERG 275 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~G 275 (408)
++++|+|+|++|+.+++.|.+.|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g 25 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASG 25 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCC
Confidence 57999999999999999999888
No 311
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=83.87 E-value=2 Score=42.94 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.0
Q ss_pred CeEEEEccChHHHHHHHHH-HHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLI-HERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L-~~~GakVVaVsD~~ 285 (408)
.+|+|+|.|++|...+..+ ...++++++|+|.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d 35 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGID 35 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 5899999999999775444 45689999999874
No 312
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.86 E-value=1.6 Score=46.34 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++++++|.|.|+|..|..+|++|.+.|++|. ++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLR-VADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCC
Confidence 3568899999999999999999999999986 68865
No 313
>PLN02240 UDP-glucose 4-epimerase
Probab=83.84 E-value=1.9 Score=42.72 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
.+++++|+|.|. |.+|+++++.|.+.|++|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 477899999985 9999999999999999999764
No 314
>PRK11579 putative oxidoreductase; Provisional
Probab=83.81 E-value=5.2 Score=40.32 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=26.9
Q ss_pred CeEEEEccChHHH-HHHHHHHH-CCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGS-WAARLIHE-RGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~ 285 (408)
.||+|+|+|.+|. ..+..+.. .++++++|+|.+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~ 39 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD 39 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC
Confidence 5899999999997 45666654 479999999975
No 315
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.77 E-value=1.9 Score=35.91 Aligned_cols=103 Identities=23% Similarity=0.348 Sum_probs=57.1
Q ss_pred EEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc----cccccE
Q 015361 255 FVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHECDV 330 (408)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell----~~~~DI 330 (408)
|+|.|+|.+|+.+++.|.+.+.+|+ +.|.+ .+...+..++. +.-+. +. .+..+.| -.++|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid~d----------~~~~~~~~~~~--~~~i~-gd-~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VIDRD----------PERVEELREEG--VEVIY-GD-ATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEESS----------HHHHHHHHHTT--SEEEE-S--TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEECC----------cHHHHHHHhcc--ccccc-cc-chhhhHHhhcCccccCE
Confidence 6899999999999999999777888 44543 34444433332 11110 11 1112222 236787
Q ss_pred EeeccCCCccc---ccccccc--ccEEEEecCCCCCCHHHHHHHHhCCCeE
Q 015361 331 LIPCALGGVLK---RENAADV--KAKFIIEAANHPTDPEADEILSKRGVTI 376 (408)
Q Consensus 331 liPaA~~~~I~---~~na~~i--~akiIvEgAN~p~T~eA~~iL~~rGI~v 376 (408)
++=+.-....| ...++++ ..++|+..- +++..+.|++-|+-.
T Consensus 66 vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 66 VVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADH 112 (116)
T ss_dssp EEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SE
T ss_pred EEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCE
Confidence 77664433222 2233332 467777654 456677888888743
No 316
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=83.76 E-value=3.7 Score=41.81 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=53.6
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHC-CCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccE
Q 015361 253 LTFVIQGF-GNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (408)
Q Consensus 253 ~rvaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DI 330 (408)
+||+|.|. |.+|+.+++.|.+. ++++++++|.+ ..|-.+.+. ...+........-+.++....++|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-----~~g~~l~~~------~~~~~~~~~~~~~~~~~~~~~~vD~ 71 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-----SAGKPLSDV------HPHLRGLVDLVLEPLDPEILAGADV 71 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-----ccCcchHHh------CcccccccCceeecCCHHHhcCCCE
Confidence 68999997 99999999999876 78999988842 112111111 0001111010111112222357999
Q ss_pred EeeccCCCcccccccccc-cc-EEEEecCCCC
Q 015361 331 LIPCALGGVLKRENAADV-KA-KFIIEAANHP 360 (408)
Q Consensus 331 liPaA~~~~I~~~na~~i-~a-kiIvEgAN~p 360 (408)
++-|. ++..+.+.+... ++ +.|++-++..
T Consensus 72 Vf~al-P~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 72 VFLAL-PHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred EEECC-CcHHHHHHHHHHHhCCCEEEECCccc
Confidence 98874 555566655554 22 4566655544
No 317
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=83.75 E-value=3.5 Score=41.45 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=35.0
Q ss_pred CeEEEEccChHHHHHHHHHHHC-CCEEEEeecCCCeEeCCCCCCHHHH
Q 015361 253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKL 299 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iydp~GLDi~~L 299 (408)
.+|++-|+|+||.++.+.|.++ +..+|++.++++.. .|=|..+|
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak---~Gkdlgel 47 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAK---SGKDLGEL 47 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCCceEEEEecCccc---ccccHHHh
Confidence 5799999999999888888766 99999999988643 34455544
No 318
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=83.53 E-value=1 Score=45.55 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=41.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeE-e---CCCCCCHHHHHHhHh
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAV-K---NADGIDIHKLLAHKD 304 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i-y---dp~GLDi~~L~~~~~ 304 (408)
|+|++|+|+|+|+=|.+=|.-|.+.|..|+ |.=..|.. + -++|+++..+.+..+
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k 73 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAK 73 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhh
Confidence 899999999999999999999999999876 65555544 3 367776655555444
No 319
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=83.48 E-value=2.2 Score=39.81 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeec
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (408)
++++++.|.|. |.+|+.+++.|.++|++++.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence 46789999995 99999999999999999987554
No 320
>PLN02206 UDP-glucuronate decarboxylase
Probab=83.47 E-value=1.8 Score=45.63 Aligned_cols=37 Identities=35% Similarity=0.457 Sum_probs=32.0
Q ss_pred hCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 246 HGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 246 ~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+|...+++||.|.|. |-||+++++.|.++|.+|+++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 355567899999995 9999999999999999999764
No 321
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=83.36 E-value=2.2 Score=42.77 Aligned_cols=37 Identities=32% Similarity=0.582 Sum_probs=32.5
Q ss_pred CCCCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeec
Q 015361 247 GQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 247 g~~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (408)
|.+.+++||.|.| .|-+|+++++.|.++|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567899999999 599999999999999999997654
No 322
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=83.34 E-value=10 Score=34.56 Aligned_cols=47 Identities=28% Similarity=0.385 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeE-EEEccChHH---HHHHHHHHHCCCEEEE
Q 015361 230 ATGRGVVYATEALLAEHGQAIRDLTF-VIQGFGNVG---SWAARLIHERGGKVIA 280 (408)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~rv-aIqGfGnVG---~~~a~~L~~~GakVVa 280 (408)
..|++++..++..+. ..+..+| ++.|-||=| ..+|++|.++|++|..
T Consensus 7 ~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 7 NAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 467777776665553 3444555 569998765 5677999999999874
No 323
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.32 E-value=1.5 Score=44.85 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=32.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 678899999999999999999999998777788865
No 324
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.06 E-value=2.4 Score=39.45 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++.|.|. |.+|+.+++.|.++|++|+.+ |.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~-~r 37 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALI-DL 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 367899999997 999999999999999998754 54
No 325
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.97 E-value=3.8 Score=40.89 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=26.7
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|++|..++..|.+.|..|. +.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR 31 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 369999999999999999999998886 5444
No 326
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.90 E-value=4.1 Score=38.58 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=50.3
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCC---E-EEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccc
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGG---K-VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH 326 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~Ga---k-VVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~ 326 (408)
+.+||+|.|.|++|+..+..|.+.|. + ++ +.+.+ +.+.+.+..++.+ +.. .-+.++++ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~-~~~~~---------~~~~~~~~~~~~~-~~~-----~~~~~~~~-~ 65 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEII-VSNRS---------NVEKLDQLQARYN-VST-----TTDWKQHV-T 65 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEE-EECCC---------CHHHHHHHHHHcC-cEE-----eCChHHHH-h
Confidence 46789999999999999999887762 2 33 23221 1234444333321 111 11223444 3
Q ss_pred cccEEeeccCCCccccccccc----cccEEEEecCCCC
Q 015361 327 ECDVLIPCALGGVLKRENAAD----VKAKFIIEAANHP 360 (408)
Q Consensus 327 ~~DIliPaA~~~~I~~~na~~----i~akiIvEgAN~p 360 (408)
++|+++-|.....+ .+-+.+ ++-++|+--+.+-
T Consensus 66 ~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 66 SVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred cCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCC
Confidence 78999988654432 222222 2235666665543
No 327
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.85 E-value=1.9 Score=45.67 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=30.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+.+++|.|.|+|..|..+|++|.+.|++|+ ++|.+
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999765 77853
No 328
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.74 E-value=2 Score=45.78 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+.|++|+|.|+|..|..++++|...|++|+ ++|.+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 468899999999999999999999999988 58853
No 329
>PRK07411 hypothetical protein; Validated
Probab=82.65 E-value=1.5 Score=45.47 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+..+|.|.|.|-+|+.+++.|...|..-+.+.|.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999999999999999999998877788865
No 330
>PRK06523 short chain dehydrogenase; Provisional
Probab=82.61 E-value=2.3 Score=40.16 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.+++|+++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 39 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTT 39 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEE
Confidence 4588999999995 899999999999999998855
No 331
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=82.41 E-value=2.7 Score=44.07 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=61.3
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCc---ccccc-
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL---LAHEC- 328 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~el---l~~~~- 328 (408)
..+-|+|.|-+|+++|.-..++|++|. |-+.+ .++..+..++++.-.++-+...+ +|+ |+.|=
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~Va-vyNRt----------~~ktd~f~~~~~~~k~i~~~~si--eefV~~Le~PRk 70 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVA-VYNRT----------TEKTDEFLAERAKGKNIVPAYSI--EEFVASLEKPRK 70 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEE-EEeCC----------HHHHHHHHHhCccCCCccccCcH--HHHHHHhcCCce
Confidence 468899999999999999999999985 44432 33444444443322222111111 121 12221
Q ss_pred -cEEeeccCCCccccccccc----c-ccEEEEecCCCCC--CHHHHHHHHhCCCeEE
Q 015361 329 -DVLIPCALGGVLKRENAAD----V-KAKFIIEAANHPT--DPEADEILSKRGVTIL 377 (408)
Q Consensus 329 -DIliPaA~~~~I~~~na~~----i-~akiIvEgAN~p~--T~eA~~iL~~rGI~vv 377 (408)
=++|-|. ..++ +..++ + +--+|++|.|.-. |..--+.|.++||.++
T Consensus 71 I~lMVkAG--~~VD-~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~Fv 124 (473)
T COG0362 71 ILLMVKAG--TPVD-AVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFV 124 (473)
T ss_pred EEEEEecC--CcHH-HHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEE
Confidence 1222222 1111 11111 1 4568999999865 5555578999999887
No 332
>PRK06841 short chain dehydrogenase; Provisional
Probab=82.39 E-value=2.5 Score=39.72 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~ 45 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALL 45 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 578999999994 999999999999999998854
No 333
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=82.39 E-value=2.5 Score=40.13 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+++++++.|.|. +.+|+.+|+.|.+.|++|+.+.++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4588999999996 899999999999999999865443
No 334
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.29 E-value=2 Score=41.83 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=25.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
++|+|.|.|++|+.+|..|.+.|..|+.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~ 29 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLV 29 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 47999999999999999999999988744
No 335
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.19 E-value=2.3 Score=42.43 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEeec
Q 015361 248 QAIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 248 ~~l~g~rvaIqGfG---nVG~~~a~~L~~~GakVVaVsD 283 (408)
.+++||++.|.|.| -+|+.+|+.|.+.|++|| +.|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 56899999999996 799999999999999998 555
No 336
>PRK09186 flagellin modification protein A; Provisional
Probab=82.18 E-value=2.4 Score=39.77 Aligned_cols=32 Identities=41% Similarity=0.579 Sum_probs=28.9
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999996 899999999999999999865
No 337
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.13 E-value=2.5 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 367899999996 999999999999999999854
No 338
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=82.04 E-value=2.2 Score=42.61 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.4
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+++++|.|.|. |-+|+++++.|.+.|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46899999995 9999999999999999999764
No 339
>PRK07774 short chain dehydrogenase; Provisional
Probab=81.99 E-value=2.6 Score=39.34 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.++++++.|.|. |-+|+++++.|.++|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999996 999999999999999999854
No 340
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.99 E-value=2.6 Score=39.27 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~ 36 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILV 36 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 478899999995 999999999999999998754
No 341
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.98 E-value=2.9 Score=39.07 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=29.7
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeec
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (408)
.+++++++|.| .|.+|+++++.|.++|++|+.+.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 35788999999 599999999999999999985443
No 342
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=81.93 E-value=2.3 Score=40.20 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=53.8
Q ss_pred CeEEEEc-cChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcC-Ccc--cCCC-CeecCCCCccccc
Q 015361 253 LTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG-SLK--DFDG-GDSMEPSELLAHE 327 (408)
Q Consensus 253 ~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g-~l~--~~~~-~~~i~~~ell~~~ 327 (408)
++|+|.| .|++|+.++..|.+.|.+|+ +.+.+ .+.+.+..++.. .+. ++.. ....+..+. ..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~----------~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea-~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSRD----------LEKAEEAAAKALEELGHGGSDIKVTGADNAEA-AKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcC----------HHHHHHHHHHHHhhccccCCCceEEEeChHHH-Hhc
Confidence 4799997 89999999999999998887 44542 222222222110 000 1110 011122223 237
Q ss_pred ccEEeeccCCCcccc---ccccccccEEEEecCCCCC
Q 015361 328 CDVLIPCALGGVLKR---ENAADVKAKFIIEAANHPT 361 (408)
Q Consensus 328 ~DIliPaA~~~~I~~---~na~~i~akiIvEgAN~p~ 361 (408)
+|++|-|.....+.. +-.+.++.++|+..+|+..
T Consensus 69 aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 69 ADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 899888765443321 1112234488999998854
No 343
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.92 E-value=2.7 Score=39.77 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+++++++.|.|. |.+|+.+++.|.+.|++|+.+ +.
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~-~r 39 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLV-AR 39 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 4578999999997 889999999999999998854 44
No 344
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.79 E-value=2.8 Score=39.36 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.+++++++.|.|. |.+|+++++.|.+.|++|+.+
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~ 39 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLA 39 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999995 999999999999999998855
No 345
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.77 E-value=2.1 Score=42.06 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=27.5
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|++|+.+|..|...|..|+ +.|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~ 34 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDV 34 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEeC
Confidence 579999999999999999999999887 4564
No 346
>PRK08291 ectoine utilization protein EutC; Validated
Probab=81.75 E-value=16 Score=36.81 Aligned_cols=118 Identities=11% Similarity=0.006 Sum_probs=67.0
Q ss_pred CCCeEEEEccChHHHHHHHHHHH-CCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC-CCcccccc
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-SELLAHEC 328 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~-~ell~~~~ 328 (408)
..++++|.|.|..|+..+..|.. .+.+-|.|.+.+ .++..++.++...-.+.+ ....++ ++.+ .++
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~----------~~~a~~l~~~~~~~~g~~-v~~~~d~~~al-~~a 198 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD----------AAKAEAYAADLRAELGIP-VTVARDVHEAV-AGA 198 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHHHHHHHHhhccCce-EEEeCCHHHHH-ccC
Confidence 45799999999999998888875 577777676653 344444433211000110 011111 2333 368
Q ss_pred cEEeeccCC--CccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcchh
Q 015361 329 DVLIPCALG--GVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY 381 (408)
Q Consensus 329 DIliPaA~~--~~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD~l 381 (408)
||++-|... ..+..+..+ -.+.+++=|++.|.-.|.+.-+.++.-.|+-|..
T Consensus 199 DiVi~aT~s~~p~i~~~~l~-~g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~ 252 (330)
T PRK08291 199 DIIVTTTPSEEPILKAEWLH-PGLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRL 252 (330)
T ss_pred CEEEEeeCCCCcEecHHHcC-CCceEEeeCCCCCCcccCCHHHHhhCCEEEeCCH
Confidence 999988643 234443332 2345777788888777766544455444544543
No 347
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.69 E-value=2.1 Score=44.76 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+++++|.|.|+|.-|..+|++|.++|++|. ++|..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDDN 41 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999876 78854
No 348
>PRK09072 short chain dehydrogenase; Provisional
Probab=81.66 E-value=2.8 Score=39.78 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |-+|+.+++.|.++|++|+.+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLV 35 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999994 999999999999999998855
No 349
>PRK12829 short chain dehydrogenase; Provisional
Probab=81.65 E-value=2.5 Score=39.77 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=29.0
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 78899999995 999999999999999998754
No 350
>PTZ00117 malate dehydrogenase; Provisional
Probab=81.59 E-value=1.9 Score=43.51 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=28.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCC-CEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERG-GKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~ 285 (408)
.+.++|+|.|.|+||+.++..|...| .. +.+.|.+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 35679999999999999999998888 45 5577764
No 351
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=81.46 E-value=1.8 Score=44.87 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=32.1
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+..+|.|.|.|-+|+.+|+.|...|..-+.+.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 567899999999999999999999998777788865
No 352
>PLN02427 UDP-apiose/xylose synthase
Probab=81.37 E-value=2.5 Score=42.93 Aligned_cols=37 Identities=30% Similarity=0.472 Sum_probs=31.8
Q ss_pred hCCCCCCCeEEEEcc-ChHHHHHHHHHHHC-CCEEEEee
Q 015361 246 HGQAIRDLTFVIQGF-GNVGSWAARLIHER-GGKVIAVS 282 (408)
Q Consensus 246 ~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~-GakVVaVs 282 (408)
-|+.++.+||.|.|. |-+|+++++.|.++ |.+|+++.
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 356688899999995 99999999999998 58999774
No 353
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=81.22 E-value=2.4 Score=42.51 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeec
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (408)
.-+++++|.|.|. |-+|+++++.|.++|.+|+++.-
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3467899999995 99999999999999999997753
No 354
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=81.19 E-value=2.7 Score=40.55 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=31.6
Q ss_pred CCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++++++|.|+|.|.|+..=++.|.+.|++|+-||-.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 477999999999999999999999999999866543
No 355
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=81.18 E-value=32 Score=36.09 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeec
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD 283 (408)
..++|+||+|.|-......++++|.+.|.+++.+.-
T Consensus 299 ~~l~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~ 334 (435)
T cd01974 299 QYLHGKKFALYGDPDFLIGLTSFLLELGMEPVHVLT 334 (435)
T ss_pred HhcCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEe
Confidence 357899999999888888999999999999987654
No 356
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=81.05 E-value=6.7 Score=45.89 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEE
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGGKV 278 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~GakV 278 (408)
.-.+|+|.|.|+||+++++.+...|++.
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~~ 229 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHTF 229 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCCc
Confidence 3578999999999999999999999884
No 357
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=80.97 E-value=1.2 Score=50.02 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|.|.|-+|+..|..+...|+.|+ +.|.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~-l~d~~ 367 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTV-LKDAT 367 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEE-EecCC
Confidence 579999999999999999999999998 66654
No 358
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.83 E-value=1.6 Score=44.54 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC-EEEEe
Q 015361 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAV 281 (408)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~Ga-kVVaV 281 (408)
.-.||||.+.-+ ... -+|.+|||-|.|.||..+++-....|+ ||+||
T Consensus 176 GvsTG~GAa~~~------Akv-~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 176 GVSTGYGAAWNT------AKV-EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred cccccchhhhhh------ccc-CCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 357999975322 112 378999999999999999998888884 78765
No 359
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.78 E-value=2.9 Score=39.56 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++|+++.|.|. |.+|+.+++.|.++|++|+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 478999999995 899999999999999999865
No 360
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.75 E-value=3.2 Score=38.76 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=29.4
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++|.|. |.+|+.+++.|.++|++|+.+.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 46789999995 899999999999999998854433
No 361
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.74 E-value=2.7 Score=39.43 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++++++.|.|. |.+|.++++.|.+.|++|+.+ |.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~-~r 44 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILL-GR 44 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEE-eC
Confidence 68999999985 999999999999999999854 44
No 362
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=80.65 E-value=2.3 Score=41.61 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCC
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGG 276 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~Ga 276 (408)
+..+|+|.|.|-+|+.+++.|.+.|.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHH 35 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccc
Confidence 56899999999999999999998763
No 363
>PRK05876 short chain dehydrogenase; Provisional
Probab=80.56 E-value=3 Score=40.34 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++.|.| .|.+|+.+|+.|.++|++|+ ++|.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r 38 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGDV 38 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 37889999998 58999999999999999987 4554
No 364
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=80.56 E-value=2.5 Score=42.99 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=29.2
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 251 ~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+++||+|.|. |.||+++++.|.++|.+|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5689999997 9999999999999999999774
No 365
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.56 E-value=1.6 Score=48.76 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|+|.|.+|..+|..+...|+.|+ +.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVI-MKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEE-EEeCC
Confidence 589999999999999999999999998 66654
No 366
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.55 E-value=3.1 Score=39.89 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+++|+++.|.|. |.+|+.+|+.|.++|++|+. .|.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~-~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVIL-LSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEE-EeC
Confidence 4578999999996 78999999999999999874 454
No 367
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.53 E-value=3.2 Score=38.95 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.++++++.|.|. |.+|+.+++.|.+.|++|+.+ +.
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~-~r 39 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVA-DR 39 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 478899999995 899999999999999998854 44
No 368
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=80.52 E-value=9.3 Score=38.53 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=64.2
Q ss_pred CCCeEEEEccChHHHHHHHHHH-HCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCe--ecCC-CCcccc
Q 015361 251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD--SMEP-SELLAH 326 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~--~i~~-~ell~~ 326 (408)
..++++|.|.|..|+..++.|. ..+.+-|.|.+.+ .++..++.++-.. .+ +.+ ..++ ++.+ .
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~----------~~~a~~~a~~~~~--~~-g~~v~~~~~~~~av-~ 193 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD----------SAKAEALALQLSS--LL-GIDVTAATDPRAAM-S 193 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC----------HHHHHHHHHHHHh--hc-CceEEEeCCHHHHh-c
Confidence 4579999999999999999886 4777767676653 3333333322100 01 111 1111 2233 4
Q ss_pred cccEEeeccCCC--ccccccccccccEEEEecCCCCCCHHHHHHHHhCCCeEEcc
Q 015361 327 ECDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPD 379 (408)
Q Consensus 327 ~~DIliPaA~~~--~I~~~na~~i~akiIvEgAN~p~T~eA~~iL~~rGI~vvPD 379 (408)
++||++-|.... .++.+..+ -.+.+..=|++.|.-.|.+..+.++--+|+-|
T Consensus 194 ~aDiVvtaT~s~~p~i~~~~l~-~g~~i~~vg~~~p~~rEld~~~l~~a~~~vvD 247 (326)
T TIGR02992 194 GADIIVTTTPSETPILHAEWLE-PGQHVTAMGSDAEHKNEIDPAVIAKADHYVAD 247 (326)
T ss_pred cCCEEEEecCCCCcEecHHHcC-CCcEEEeeCCCCCCceecCHHHHhccCEEEcC
Confidence 799999886432 34433332 24456677788877555543333333334444
No 369
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=80.48 E-value=2.8 Score=37.34 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=27.5
Q ss_pred EEEEcc-ChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 255 FVIQGF-GNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 255 vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+|.|. |.+|+.+++.|.++|++|++++-+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 678895 9999999999999999999887653
No 370
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=80.48 E-value=5.4 Score=40.70 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=28.1
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHC-CCEEEEeecCC
Q 015361 253 LTFVIQGF-GNVGSWAARLIHER-GGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~~ 285 (408)
++|+|.|. |-||+.++++|.+. +.+++++.+++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccc
Confidence 47999998 99999999999876 78898876654
No 371
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=80.44 E-value=1.6 Score=48.81 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=28.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|+|.|.+|...|..+...|+.|+ +.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIV-MKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEE-EEeCC
Confidence 479999999999999999999999998 66654
No 372
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.37 E-value=3.2 Score=38.81 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.6
Q ss_pred CCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (408)
++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 5678999999 5999999999999999999855
No 373
>PRK12937 short chain dehydrogenase; Provisional
Probab=80.36 E-value=3.6 Score=38.19 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeec
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (408)
.++++++.|.|. |.+|+.+++.|.++|++++.+..
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 467899999995 99999999999999999885543
No 374
>PRK12746 short chain dehydrogenase; Provisional
Probab=80.36 E-value=3.5 Score=38.64 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.| .|-+|+++++.|.++|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 46789999999 5999999999999999998744
No 375
>PRK05309 30S ribosomal protein S11; Validated
Probab=80.27 E-value=6.4 Score=34.84 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCCChhHHHHHHHHHHHHH-HhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEe
Q 015361 226 GREAATGRGVVYATEALLA-EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVK 289 (408)
Q Consensus 226 gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iy 289 (408)
|....|-|....+.+.+.+ ....+++...|.+-|+|.=-..+.+.|...|.+|+.|.|.+..-|
T Consensus 53 g~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~Tpiph 117 (128)
T PRK05309 53 GSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPH 117 (128)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 4446777777777776665 233457788899999998667777899999999999999765444
No 376
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.24 E-value=3.3 Score=38.95 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+++++++.|.|. |.+|+.+++.|.+.|++|+.+ +.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~-~r 43 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVN-GR 43 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE-eC
Confidence 3488999999995 999999999999999999854 44
No 377
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.23 E-value=3.1 Score=42.50 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=75.7
Q ss_pred HHHHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCe---EeCC-------CCC-CHHHHHHhHhhcCC-
Q 015361 241 ALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGA---VKNA-------DGI-DIHKLLAHKDKTGS- 308 (408)
Q Consensus 241 ~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~---iydp-------~GL-Di~~L~~~~~~~g~- 308 (408)
..|++.|.. .|+++.|.|.|-+|.-+.++-..+|.+|++|+-++.. ..+. +.. |.+.+.++.+....
T Consensus 172 spLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCc
Confidence 456777888 8999999999999999999999999999999877420 0000 011 33444443332211
Q ss_pred c---ccCCCCeecCC-CCcccccccEEeeccCCCccccccccc-cccEEEEecCCCC--CCHHHHHHHHhCCCe
Q 015361 309 L---KDFDGGDSMEP-SELLAHECDVLIPCALGGVLKRENAAD-VKAKFIIEAANHP--TDPEADEILSKRGVT 375 (408)
Q Consensus 309 l---~~~~~~~~i~~-~ell~~~~DIliPaA~~~~I~~~na~~-i~akiIvEgAN~p--~T~eA~~iL~~rGI~ 375 (408)
+ .++. ...+++ -+++...--+..-.+.++.+.-+...- ++.+.|+...=+- -|+|+-+...+.+|.
T Consensus 251 ~~~v~~~a-~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik 323 (360)
T KOG0023|consen 251 IDTVSNLA-EHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIK 323 (360)
T ss_pred ceeeeecc-ccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence 1 1110 001110 123333333443333444444443333 4777787776555 478888877666653
No 378
>PRK10206 putative oxidoreductase; Provisional
Probab=80.21 E-value=3.1 Score=42.19 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=24.1
Q ss_pred CeEEEEccChHHH-HHHHHH-HH-CCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGS-WAARLI-HE-RGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~-~~a~~L-~~-~GakVVaVsD~~ 285 (408)
.||+|+|+|+.+. .-+..+ .. .++.++||+|.+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~ 37 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH 37 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC
Confidence 4899999999775 233434 32 479999999975
No 379
>PRK08264 short chain dehydrogenase; Validated
Probab=80.21 E-value=3.1 Score=38.56 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCC-EEEEe
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGG-KVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~Ga-kVVaV 281 (408)
+++++++.|.| .|.+|+.+|+.|.++|+ +|+.+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEE
Confidence 46788999999 59999999999999999 77644
No 380
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=80.18 E-value=3.3 Score=39.33 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 467899999995 889999999999999999854
No 381
>PRK07236 hypothetical protein; Provisional
Probab=80.17 E-value=3 Score=42.32 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNA 291 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp 291 (408)
++..+|+|+|.|-+|..+|..|.+.|.+|+ |.|......++
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 556899999999999999999999999987 77764333333
No 382
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.17 E-value=2.4 Score=38.89 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=28.2
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
||+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998756688865
No 383
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=80.14 E-value=7.3 Score=39.21 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=29.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
.+|++|+|.|.|++|..+|..|.+.|.+.|.|.+..
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 458999999999999999999988998744466543
No 384
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=80.08 E-value=3.5 Score=37.97 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=28.9
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
++++++++|.|. |.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 456789999995 9999999999999999976443
No 385
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=79.97 E-value=5.3 Score=40.20 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=34.1
Q ss_pred HHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 243 l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+...+....|.+|+|.|.|.+|..+++++..+|++++.+++.
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344454457899999999999999999999999998876543
No 386
>PRK07890 short chain dehydrogenase; Provisional
Probab=79.93 E-value=3.1 Score=39.08 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=29.6
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++++++.|.|. |.+|+.+++.|.++|++|+ +.|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 57899999995 8999999999999999988 4454
No 387
>PRK06057 short chain dehydrogenase; Provisional
Probab=79.93 E-value=3.2 Score=39.16 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
++|++|.|.|. |.+|..+++.|.++|++|+.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 78999999997 999999999999999999854
No 388
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=79.77 E-value=6.8 Score=33.54 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=49.3
Q ss_pred CCCCChhHHHHHHHHHHHHH-HhCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEe
Q 015361 225 LGREAATGRGVVYATEALLA-EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVK 289 (408)
Q Consensus 225 ~gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iy 289 (408)
.+....|-|....+++.+.+ .....++...|.+-|+|.=-..+.+.|.+.|.+|+-|.|.+..-|
T Consensus 35 kg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iph 100 (108)
T TIGR03632 35 KGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPH 100 (108)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 34456788887777776665 233557788899999998667777999999999999999876544
No 389
>CHL00041 rps11 ribosomal protein S11
Probab=79.74 E-value=7 Score=33.96 Aligned_cols=64 Identities=23% Similarity=0.238 Sum_probs=48.6
Q ss_pred CCCChhHHHHHHHHHHHHHH-hCCCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEe
Q 015361 226 GREAATGRGVVYATEALLAE-HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVK 289 (408)
Q Consensus 226 gr~~aTg~Gv~~~~~~~l~~-~g~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iy 289 (408)
|....|-|....+.+.+++. ....++...|.|-|+|.=-..+.+.|.+.|.+|+-|.|.+..-+
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~Tpiph 113 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPH 113 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 34457777777777766663 33457888999999997666777999999999999999875444
No 390
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=79.73 E-value=3.4 Score=40.59 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.5
Q ss_pred CCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+|++|.|.| .|-+|+++++.|.+.|++|+++.+.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3578999999 5999999999999999999877653
No 391
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=79.71 E-value=8.1 Score=39.98 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=28.4
Q ss_pred CeEEEEccChHHHHHHHHHHHC-----CCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHER-----GGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~ 284 (408)
.||+|-|||-+|+.++|.+.+. ...||||-|.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 5899999999999999998764 5899999884
No 392
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.54 E-value=3.4 Score=39.45 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEeecCC
Q 015361 249 AIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 249 ~l~g~rvaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+++|+++.|.|.+ .+|+.+|+.|.+.|++|+ +.|.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeCC
Confidence 4789999999975 699999999999999987 45543
No 393
>PRK05875 short chain dehydrogenase; Provisional
Probab=79.49 E-value=3.6 Score=39.23 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~ 37 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIV 37 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 477899999996 899999999999999998865
No 394
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.46 E-value=2.9 Score=43.40 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=29.3
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+.++|.|.|+|..|..+|++|.++|++|+ ++|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 34689999999999999999999999876 56754
No 395
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.45 E-value=4 Score=38.13 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+++++++.|.|. |.+|+++++.|.+.|++|++++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~ 37 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNY 37 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 367899999995 9999999999999999998654
No 396
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=79.38 E-value=4.1 Score=38.59 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeec
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (408)
+++++++.|.|. |.+|+.+++.|.++|++|+.+..
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 578999999995 89999999999999999985533
No 397
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=79.35 E-value=3 Score=41.40 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
++++++|.|.|. |-+|+++++.|.+.|++|+++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~ 37 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGII 37 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 578899999995 9999999999999999999764
No 398
>PRK06196 oxidoreductase; Provisional
Probab=79.27 E-value=3.6 Score=40.51 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 247 GQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 247 g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
..+++++++.|.|. |.+|+++++.|.+.|++|+.+
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~ 56 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVP 56 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 34578999999996 889999999999999999854
No 399
>PRK06398 aldose dehydrogenase; Validated
Probab=79.26 E-value=3.5 Score=39.22 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++|+++.|.|. |-+|+.+++.|.+.|++|+.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 478999999995 899999999999999999854
No 400
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.23 E-value=2.9 Score=41.38 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=27.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+|.|.|++|+.+|..|.+.|.+|+ +.|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 579999999999999999999999887 4454
No 401
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.21 E-value=4.7 Score=42.25 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=58.9
Q ss_pred CCCCeEEEEcc----------ChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecC
Q 015361 250 IRDLTFVIQGF----------GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME 319 (408)
Q Consensus 250 l~g~rvaIqGf----------GnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~ 319 (408)
++|++|+|-|. -.-...+++.|.++|++|+ +|||.... +.+. .|++.+..+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~--------aYDP~a~~-----~~~~------~~~~~~~~~ 368 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVI--------AYDPVAME-----NAFR------NFPDVELES 368 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEE--------EECchhhH-----HHHh------cCCCceEeC
Confidence 99999999996 4567888899999999998 37776532 1111 122223333
Q ss_pred CCCcccccccEEeeccCCCcccccccc--ccccEEEEecCCCC
Q 015361 320 PSELLAHECDVLIPCALGGVLKRENAA--DVKAKFIIEAANHP 360 (408)
Q Consensus 320 ~~ell~~~~DIliPaA~~~~I~~~na~--~i~akiIvEgAN~p 360 (408)
..+-.-..+|+++-+.--+++..-+-. .++.++|+.|-|..
T Consensus 369 ~~~~~~~~aDaivi~tew~ef~~~d~~~~~m~~~~v~DgRni~ 411 (414)
T COG1004 369 DAEEALKGADAIVINTEWDEFRDLDFEKLLMKTPVVIDGRNIF 411 (414)
T ss_pred CHHHHHhhCCEEEEeccHHHHhccChhhhhccCCEEEeccccc
Confidence 333334578999988544443322211 46788999988853
No 402
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.16 E-value=3.2 Score=40.15 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=29.6
Q ss_pred CCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++++++.|.|.+ .+|+.+|+.|.+.|++|+. .+.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~-~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAF-TYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEE-ecC
Confidence 688999999986 6999999999999999984 443
No 403
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=79.06 E-value=6.5 Score=39.76 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=56.2
Q ss_pred CCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHH-----hHhhcCCcccCCC----CeecCCC
Q 015361 252 DLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA-----HKDKTGSLKDFDG----GDSMEPS 321 (408)
Q Consensus 252 g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~-----~~~~~g~l~~~~~----~~~i~~~ 321 (408)
+|+..|.|. |-.|+++|++|.++|+.|-|+.-.+ ..+|+..+.+-++-- ..-..+.+.++.. -+.+.|+
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrs-s~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRS-SSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeecc-ccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 567788996 9999999999999999999985432 223333321111000 0000112221110 0135678
Q ss_pred CcccccccEEeeccCCCcccccccc
Q 015361 322 ELLAHECDVLIPCALGGVLKRENAA 346 (408)
Q Consensus 322 ell~~~~DIliPaA~~~~I~~~na~ 346 (408)
|+.++.+--+|+...++.....++.
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~ 105 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVD 105 (345)
T ss_pred hheeccccccccccccCcceeeeec
Confidence 8888888888888887765544444
No 404
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.88 E-value=3.7 Score=38.73 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~ 42 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLS 42 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 3478999999995 999999999999999998754
No 405
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=78.85 E-value=2.6 Score=44.71 Aligned_cols=129 Identities=22% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccccccc
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD 329 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~D 329 (408)
..+++|+|.|.|.-|..++++|.++|++|+ ++|.+-.- .+.....+. .+ .+. +..... ...+...+|
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~~~~---~~~~~~~~~---~~--~i~-~~~g~~---~~~~~~~~d 71 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDRPAP---EGLAAQPLL---LE--GIE-VELGSH---DDEDLAEFD 71 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCCCCc---cchhhhhhh---cc--Cce-eecCcc---chhccccCC
Confidence 458999999999999999999999999998 77765321 111111100 00 000 000000 112334566
Q ss_pred EEeecc--C------------CCccccc--ccccc--ccE-EEEecCCCCCCH--HHHHHHHhCCCeEEcchhcccccch
Q 015361 330 VLIPCA--L------------GGVLKRE--NAADV--KAK-FIIEAANHPTDP--EADEILSKRGVTILPDIYANSGGVT 388 (408)
Q Consensus 330 IliPaA--~------------~~~I~~~--na~~i--~ak-iIvEgAN~p~T~--eA~~iL~~rGI~vvPD~laNaGGVi 388 (408)
++|..= . +-.|..+ -+-+. .++ +-+=|.||-+|- =...+|++.|.... .--|.|...
T Consensus 72 ~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~--lgGNIG~p~ 149 (448)
T COG0771 72 LVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL--LGGNIGTPA 149 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce--eccccCccH
Confidence 665421 0 0011111 01121 354 446799998643 34579999998553 356777776
Q ss_pred hhHHH
Q 015361 389 VSYFE 393 (408)
Q Consensus 389 vSy~E 393 (408)
..+++
T Consensus 150 l~~~~ 154 (448)
T COG0771 150 LELLE 154 (448)
T ss_pred HHhhc
Confidence 66654
No 406
>PLN02712 arogenate dehydrogenase
Probab=78.84 E-value=3 Score=46.37 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=28.1
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
-+.++|+|+|+|++|+.+|+.|.+.|.+|+++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~ 81 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAH 81 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 34578999999999999999999999988754
No 407
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=78.83 E-value=3.5 Score=39.19 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeec
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (408)
.++++|+|.|. |.+|+.+++.|.+.|++|++++.
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 56789999995 99999999999999999987754
No 408
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.83 E-value=2.8 Score=40.94 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=27.7
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|.|.|.+|..+|..|...|..|+ +.|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeCC
Confidence 479999999999999999999999888 44643
No 409
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=78.83 E-value=6 Score=39.45 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=64.3
Q ss_pred eEEEEcc-ChHHHHHHHHHHHCCCEEEEe-ecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCccccccc-E
Q 015361 254 TFVIQGF-GNVGSWAARLIHERGGKVIAV-SDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD-V 330 (408)
Q Consensus 254 rvaIqGf-GnVG~~~a~~L~~~GakVVaV-sD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~D-I 330 (408)
+|+|-|+ |++|+.+++.+.+.+..+|+. .|..+ .|-|..++... .-.+.. |....-+.+++++..+| |
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~-----~~~~~~~~~g~---~v~v~~-~~~~~~~l~~~~~~~~d~V 72 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEE-----EAENEAEVAGK---EILLHG-PSEREARIGEVFAKYPELI 72 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccc-----cccchhhhccc---ceeeec-cccccccHHHHHhhcCCEE
Confidence 7999996 999999999998899999986 55432 34454444321 001100 11111122345555588 9
Q ss_pred EeeccCCCccccccccc---cccEEEEecCCCCCCHHHHHHHHh---CCCeEEcchh
Q 015361 331 LIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSK---RGVTILPDIY 381 (408)
Q Consensus 331 liPaA~~~~I~~~na~~---i~akiIvEgAN~p~T~eA~~iL~~---rGI~vvPD~l 381 (408)
+|.-..+..+ .+|+.. .+..+|+.= =+ .|++-.+.|.+ -++++.|-+.
T Consensus 73 vIDFT~P~~~-~~n~~~~~~~gv~~ViGT-TG-~~~~~~~~l~~~~~i~~l~apNfS 126 (275)
T TIGR02130 73 CIDYTHPSAV-NDNAAFYGKHGIPFVMGT-TG-GDREALAKLVADAKHPAVIAPNMA 126 (275)
T ss_pred EEECCChHHH-HHHHHHHHHCCCCEEEcC-CC-CCHHHHHHHHHhcCCCEEEECccc
Confidence 9987655543 334443 355555543 33 34443333332 3566666553
No 410
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.79 E-value=3.7 Score=38.02 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.| .|.+|+.+++.|.++|++|+.+
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~ 35 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGV 35 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEE
Confidence 47889999999 4899999999999999998854
No 411
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.77 E-value=2.9 Score=43.94 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCCCeEEEEccChHHHH-HHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSW-AARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~-~a~~L~~~GakVVaVsD~~ 285 (408)
.++++|.|.|.|..|.. +|++|.++|++|. ++|.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECCC
Confidence 46789999999999999 6999999999987 78864
No 412
>PRK06823 ornithine cyclodeaminase; Validated
Probab=78.76 E-value=16 Score=36.92 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=80.9
Q ss_pred eeCcccC-C-CCCCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEccChHHHHHHHHHHH-CCCEEEEeecCCCeEeC
Q 015361 214 VTGKPID-L-GGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKN 290 (408)
Q Consensus 214 ~tGkp~~-~-GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iyd 290 (408)
.||.|.. + -|..-...-||-.-+.+++.+.+ ..-++++|.|.|..+++-++.+.. ...+-|-| ||
T Consensus 93 ~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~-----~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v-------~~ 160 (315)
T PRK06823 93 KTGEPQALLLDEGWLTALRTALAGRIVARLLAP-----QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWV-------WG 160 (315)
T ss_pred CCCceEEEEcCCChHHHHHHHHHHHHHHHHhcC-----CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEE-------EC
Confidence 4777775 2 33322222344344444454432 245789999999999999988865 23333334 44
Q ss_pred CCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcccccccEEeeccC--CCccccccccccccEEEEecCCCCCCHHHHHH
Q 015361 291 ADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCAL--GGVLKRENAADVKAKFIIEAANHPTDPEADEI 368 (408)
Q Consensus 291 p~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell~~~~DIliPaA~--~~~I~~~na~~i~akiIvEgAN~p~T~eA~~i 368 (408)
.+.=..+++.+..++. ++ .....+..+-.-.++||++=|.. +..+..+..+ -++-+++=|++.|-..|.+..
T Consensus 161 r~~~~a~~~~~~~~~~----~~-~v~~~~~~~~av~~ADIV~taT~s~~P~~~~~~l~-~G~hi~~iGs~~p~~~Eld~~ 234 (315)
T PRK06823 161 RSETALEEYRQYAQAL----GF-AVNTTLDAAEVAHAANLIVTTTPSREPLLQAEDIQ-PGTHITAVGADSPGKQELDAE 234 (315)
T ss_pred CCHHHHHHHHHHHHhc----CC-cEEEECCHHHHhcCCCEEEEecCCCCceeCHHHcC-CCcEEEecCCCCcccccCCHH
Confidence 4322223333322221 11 11222222222368999997754 3345555443 367788899999987777765
Q ss_pred HHhCCCeEEcch
Q 015361 369 LSKRGVTILPDI 380 (408)
Q Consensus 369 L~~rGI~vvPD~ 380 (408)
+.++.-.|+-|.
T Consensus 235 ~l~~a~~vvvD~ 246 (315)
T PRK06823 235 LVARADKILVDS 246 (315)
T ss_pred HHhhCCEEEECC
Confidence 555553343353
No 413
>PLN02214 cinnamoyl-CoA reductase
Probab=78.72 E-value=3.4 Score=41.44 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=29.9
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+++++|.|.|. |-+|+++++.|.++|++|++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~ 41 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTV 41 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 57889999997 9999999999999999998764
No 414
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.69 E-value=3.8 Score=39.15 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~ 39 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVA 39 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999996 899999999999999998865
No 415
>PRK09135 pteridine reductase; Provisional
Probab=78.69 E-value=3.7 Score=38.03 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=29.1
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
.+++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHY 37 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 46789999995 9999999999999999998664
No 416
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.68 E-value=3 Score=40.65 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=28.5
Q ss_pred CCCeEEEEc-cChHHHHHHHHHHHCCCEEEEee
Q 015361 251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 251 ~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (408)
++++|.|.| .|-+|+++++.|.++|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 59999999999999999998664
No 417
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.66 E-value=6.2 Score=39.27 Aligned_cols=34 Identities=15% Similarity=0.470 Sum_probs=28.8
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCE-EEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGK-VIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~Gak-VVaVsD~ 284 (408)
..|.+|+|.|.|.||..+++++...|++ |+ ++|.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi-~~~~ 202 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIV-CADV 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEE-EEeC
Confidence 3689999999999999999999999995 55 4443
No 418
>PRK06223 malate dehydrogenase; Reviewed
Probab=78.65 E-value=2.3 Score=42.11 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=26.1
Q ss_pred CeEEEEccChHHHHHHHHHHHCCC-EEEEeecC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGG-KVIAVSDI 284 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~ 284 (408)
+||+|.|.|+||+.+|..+...|. .|+ +.|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~-L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVV-LFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEE-EEEC
Confidence 589999999999999999988774 555 6676
No 419
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.64 E-value=4.2 Score=37.43 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++.++|.|.|. |.+|+.+++.|.++|++|+.++..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 45679999985 999999999999999998765544
No 420
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.60 E-value=3.3 Score=40.52 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
++++++|.|.|. |.+|+++|+.|.++|++|+.++
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~ 47 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAV 47 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 578999999995 9999999999999999998654
No 421
>PRK07856 short chain dehydrogenase; Provisional
Probab=78.60 E-value=4.1 Score=38.33 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.+++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~ 36 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVC 36 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3578999999995 899999999999999998854
No 422
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.50 E-value=4.5 Score=37.72 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeec
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (408)
+++++++.|.|. |.+|+++++.|.++|++++.+.+
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 467889999994 88999999999999999875544
No 423
>PRK07062 short chain dehydrogenase; Provisional
Probab=78.49 E-value=4 Score=38.69 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.+++|+++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAIC 38 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 4588999999996 889999999999999998844
No 424
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.41 E-value=2.4 Score=42.15 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEee
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (408)
...++|+|.|.|.+|..+|..|.+.|..|+-++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 345789999999999999999999999887553
No 425
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.38 E-value=3.9 Score=38.93 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++.|.|. |.+|+++++.|.++|++|+.+ +.
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~-~r 42 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIA-AR 42 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 478899999996 789999999999999999854 44
No 426
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=78.30 E-value=3.8 Score=38.12 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=28.4
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 47889999995 999999999999999998754
No 427
>PRK07831 short chain dehydrogenase; Provisional
Probab=78.27 E-value=3.7 Score=38.93 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=29.0
Q ss_pred CCCCeEEEEcc-C-hHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGF-G-NVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGf-G-nVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++++++.|.|. | .+|+.+++.|.++|++|+ +.|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 56899999996 6 699999999999999987 4443
No 428
>PRK12939 short chain dehydrogenase; Provisional
Probab=78.23 E-value=4.1 Score=37.82 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 367899999995 999999999999999999866
No 429
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.14 E-value=4 Score=38.48 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++|+++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 39 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIA 39 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999996 899999999999999998844
No 430
>PRK06849 hypothetical protein; Provisional
Probab=78.13 E-value=2.8 Score=42.85 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=28.9
Q ss_pred CCCeEEEEccCh-HHHHHHHHHHHCCCEEEEeecCC
Q 015361 251 RDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 251 ~g~rvaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+.+||.|.|.+. +|..+++.|.+.|.+|+++ |++
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~-d~~ 37 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILA-DSL 37 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCC
Confidence 458999999875 8999999999999999955 553
No 431
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.13 E-value=7.2 Score=37.73 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=29.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCE-EEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGK-VIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~Gak-VVaVsD~ 284 (408)
..|.+|+|.|.|.+|..+++++..+|++ |+++ |.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC
Confidence 3789999999999999999999999997 6654 54
No 432
>PRK07577 short chain dehydrogenase; Provisional
Probab=78.13 E-value=4 Score=37.67 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=28.3
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 251 ~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+++++.|.|. |.+|+.+++.|.++|++|+.+.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~ 34 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIA 34 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5688999995 9999999999999999998664
No 433
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.12 E-value=3.9 Score=38.76 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++|+++.|.|. +.+|+.+|+.|.++|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 478999999995 899999999999999999854
No 434
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.08 E-value=4.1 Score=38.19 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=29.6
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.| .|.+|.++++.|.+.|++|+.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVS 38 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 57889999999 5999999999999999999855
No 435
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=78.06 E-value=2.8 Score=43.44 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=27.8
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|.|.|.||..+|..|.+.|.+|++ .|.+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~-~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTG-VDID 32 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEE-EECC
Confidence 3799999999999999999999999885 4543
No 436
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=78.03 E-value=3.2 Score=44.87 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
..|++|+|+|.|.+|..+|..|.++|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 468999999999999999999999999977 5664
No 437
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=78.02 E-value=4.2 Score=38.25 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++.|.|. |.+|+.+++.|.++|++|+. .|.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl-~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIII-NDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEE-EcC
Confidence 478999999994 89999999999999999984 444
No 438
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.99 E-value=4.2 Score=38.42 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|..+++.|.++|++|+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999995 899999999999999998844
No 439
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.98 E-value=4.3 Score=39.80 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
..++++++.|.|. |.+|+.+|+.|.++|++|+.+
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~ 70 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAV 70 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4578899999995 999999999999999999854
No 440
>PRK09620 hypothetical protein; Provisional
Probab=77.78 E-value=4.2 Score=39.22 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=29.3
Q ss_pred CCCCeEEEEcc-----------------ChHHHHHHHHHHHCCCEEEEeec
Q 015361 250 IRDLTFVIQGF-----------------GNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 250 l~g~rvaIqGf-----------------GnVG~~~a~~L~~~GakVVaVsD 283 (408)
++|++|.|.+. |-+|+++|+.|.++|++|+.+..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 47889988854 89999999999999999997754
No 441
>PRK06194 hypothetical protein; Provisional
Probab=77.77 E-value=4.1 Score=39.10 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=28.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~ 36 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLA 36 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEE
Confidence 367889999995 899999999999999998844
No 442
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.72 E-value=4.9 Score=37.93 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
.++++++.|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999995 9999999999999999998543
No 443
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=77.66 E-value=5.7 Score=40.57 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=29.7
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 251 ~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+++|.|.|. |-+|+++++.|.++|++|.|....
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~ 39 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRD 39 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcC
Confidence 6789999995 999999999999999999865443
No 444
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.64 E-value=4 Score=37.72 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=28.2
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 56789999985 999999999999999998855
No 445
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.63 E-value=4 Score=39.42 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=29.4
Q ss_pred CCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 284 (408)
++|+++.|.|.+ .+|+.+|+.|.+.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 688999999986 699999999999999987 4443
No 446
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=77.53 E-value=4.3 Score=38.51 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
++++++++|.|. |.+|+.+++.|.++|++|+.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 478999999994 899999999999999999844
No 447
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=77.45 E-value=4.1 Score=38.39 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~-~~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVL-VDR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 378899999996 89999999999999999984 454
No 448
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.42 E-value=4.5 Score=38.54 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 467889999995 999999999999999998743
No 449
>PRK06500 short chain dehydrogenase; Provisional
Probab=77.42 E-value=4.1 Score=37.88 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=28.9
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 67889999995 999999999999999998854
No 450
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=77.41 E-value=3.6 Score=41.18 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEEcc---ChHHHHHHHHHHHCCCEEEE
Q 015361 247 GQAIRDLTFVIQGF---GNVGSWAARLIHERGGKVIA 280 (408)
Q Consensus 247 g~~l~g~rvaIqGf---GnVG~~~a~~L~~~GakVVa 280 (408)
+.+++|+++.|.|. ..+|..+|+.|.+.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 45699999999999 66999999999999999985
No 451
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.41 E-value=2.8 Score=46.41 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=33.3
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
|+..+|.|.|.|-+|..+|+.|...|.+-+.+.|.+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 789999999999999999999999998888888865
No 452
>PRK10637 cysG siroheme synthase; Provisional
Probab=77.30 E-value=3.2 Score=43.95 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEccChHHHHHHHHHHHCCCEEEEee
Q 015361 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 248 ~~l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (408)
.+++|++|.|.|.|+|+..=++.|.+.|++|+-||
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~vis 42 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNA 42 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 46899999999999999999999999999998665
No 453
>PRK08226 short chain dehydrogenase; Provisional
Probab=77.27 E-value=4.5 Score=38.22 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=29.1
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (408)
.++++++.|.| .|.+|+.+++.|.++|++|+.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~ 36 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILL 36 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 36789999998 5999999999999999998855
No 454
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.25 E-value=4 Score=38.57 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcc---ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF---GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf---GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|..+++.|.++|++|+.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 468899999997 479999999999999999855
No 455
>PRK05872 short chain dehydrogenase; Provisional
Probab=77.19 E-value=4.6 Score=39.49 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++|+++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~ 39 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALV 39 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 578999999995 899999999999999998743
No 456
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.17 E-value=4.6 Score=37.98 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++++.|.|. |.+|..+++.|.+.|++|+.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~ 36 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVG 36 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 467899999995 899999999999999998854
No 457
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=77.15 E-value=4.1 Score=36.74 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.9
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+++|.|.|+.|+.++..|.+.|.+++++.|.+
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~ 32 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDN 32 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 47899999999999999999999999999976
No 458
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.14 E-value=4.6 Score=39.78 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+++|+++.|.|. |.+|+.+|+.|.++|++|+ +.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 4689999999995 8899999999999999988 4454
No 459
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.14 E-value=4.7 Score=38.37 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++.|.|. |.+|+.+++.|.+.|++|+. .|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAI-VDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 467899999995 99999999999999999874 454
No 460
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.11 E-value=4 Score=38.81 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=28.8
Q ss_pred CCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEe
Q 015361 250 IRDLTFVIQGFG---NVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 250 l~g~rvaIqGfG---nVG~~~a~~L~~~GakVVaV 281 (408)
++|+++.|.|.+ .+|+.+|+.|.+.|++|+.+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 789999999975 79999999999999999844
No 461
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=77.10 E-value=7.2 Score=39.85 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.7
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
..|.+|+|.|.|.||..+++++..+|++|+++.+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36899999999999999999999999998876543
No 462
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.02 E-value=5.2 Score=36.99 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++++++.|.|. |.+|+.+++.|.++|++++.+.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467889999995 999999999999999999865344
No 463
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.89 E-value=7.4 Score=38.79 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=32.9
Q ss_pred HHHhCCCCCCCeEEEEccChHHHHHHHHHHHCCC-EEEEeec
Q 015361 243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSD 283 (408)
Q Consensus 243 l~~~g~~l~g~rvaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD 283 (408)
+...+....|.+|.|.|.|.+|+.+++++...|+ +|++++.
T Consensus 169 l~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 169 LDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3444433478999999999999999999999999 8886643
No 464
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=76.76 E-value=5 Score=37.46 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
.+++++++.|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~ 39 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFD 39 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4578999999995 8899999999999999998663
No 465
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.74 E-value=4.6 Score=38.13 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.++++++.|.|. |.+|+.+++.|.++|++|+. .|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~-~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVAL-ADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 378899999995 89999999999999999884 444
No 466
>PLN00198 anthocyanidin reductase; Provisional
Probab=76.71 E-value=4.2 Score=40.31 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=29.6
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (408)
..++++|.|.| .|-+|+++++.|.+.|++|+++.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 35688999999 69999999999999999997553
No 467
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=76.65 E-value=3.7 Score=45.31 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=30.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
..|++|+|+|.|..|..+|..|.++|++|+ |.|.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~ 358 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVT-VYDR 358 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 368999999999999999999999999976 6664
No 468
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.60 E-value=3.7 Score=40.84 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=27.7
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
++|+|.|.|.+|..+|..|.+.|.+|+ +.|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEeCC
Confidence 479999999999999999999999987 44543
No 469
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=76.53 E-value=7.1 Score=33.07 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=27.0
Q ss_pred eEEEEcc-ChHHHHHHHHHHH-CCCEEEEeecCC
Q 015361 254 TFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDIT 285 (408)
Q Consensus 254 rvaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~ 285 (408)
|++|.|. |.+|..+++.|.+ .+++++++++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence 5899995 9999999999988 589999996643
No 470
>PRK06914 short chain dehydrogenase; Provisional
Probab=76.50 E-value=4.6 Score=38.59 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCCeEEEEc-cChHHHHHHHHHHHCCCEEEEee
Q 015361 251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 251 ~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (408)
+++++.|.| .|-+|+.+++.|.++|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 567889988 49999999999999999998664
No 471
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=76.50 E-value=4.6 Score=41.61 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=32.1
Q ss_pred hCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 246 HGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 246 ~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
.+...++++|.|.|. |.+|+++++.|.++|++|++++
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~ 91 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVA 91 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 345678899999996 9999999999999999998764
No 472
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.44 E-value=11 Score=38.78 Aligned_cols=111 Identities=22% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCeEEEEccChHHHHHHHHHH---HCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCCcc-c
Q 015361 251 RDLTFVIQGFGNVGSWAARLIH---ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL-A 325 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~---~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i-~~~ell-~ 325 (408)
.-.|+-|.|.|..++..++-|. +.+++||||+|.+ .+..++..++++ +|..+.. +-++++ +
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s----------~~~A~~fAq~~~----~~~~k~y~syEeLakd 70 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPS----------LERAKEFAQRHN----IPNPKAYGSYEELAKD 70 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEeccc----------HHHHHHHHHhcC----CCCCccccCHHHHhcC
Confidence 3468899999999999999886 4579999999874 455555555543 2222222 235566 4
Q ss_pred ccccEEeeccCCCcccccccccc----ccEEEEecCCCCCCHHHHHHH---HhCCCeEE
Q 015361 326 HECDVLIPCALGGVLKRENAADV----KAKFIIEAANHPTDPEADEIL---SKRGVTIL 377 (408)
Q Consensus 326 ~~~DIliPaA~~~~I~~~na~~i----~akiIvEgAN~p~T~eA~~iL---~~rGI~vv 377 (408)
.+||+++=. ++|..+-+-+... |. +.||=.=.-.-+|+++++ ++||+.+.
T Consensus 71 ~~vDvVyi~-~~~~qH~evv~l~l~~~K~-VL~EKPla~n~~e~~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 71 PEVDVVYIS-TPNPQHYEVVMLALNKGKH-VLCEKPLAMNVAEAEEIVEAAEARGVFFM 127 (351)
T ss_pred CCcCEEEeC-CCCccHHHHHHHHHHcCCc-EEecccccCCHHHHHHHHHHHHHcCcEEE
Confidence 568886653 4454444433221 22 777754333346777765 57786654
No 473
>PRK10537 voltage-gated potassium channel; Provisional
Probab=76.42 E-value=15 Score=38.27 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=61.9
Q ss_pred CCeEEEEccChHHHHHHHHHHHCCCEEEEeecCCCeEeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCCcc----ccc
Q 015361 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHE 327 (408)
Q Consensus 252 g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iydp~GLDi~~L~~~~~~~g~l~~~~~~~~i~~~ell----~~~ 327 (408)
...++|.|+|.+|+.+++.|.++|..++-| |.+ ..+ +..+++-.+ + .+.. +.++.| -.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVI-d~d---------~~~---~~~~~g~~v--I-~GD~-td~e~L~~AgI~~ 302 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVI-VPL---------GLE---HRLPDDADL--I-PGDS-SDSAVLKKAGAAR 302 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEE-ECc---------hhh---hhccCCCcE--E-EeCC-CCHHHHHhcCccc
Confidence 457999999999999999999999888744 432 011 111111001 0 0111 223333 226
Q ss_pred ccEEeeccCCCccc---ccccccc--ccEEEEecCCCCCCHHHHHHHHhCCC--eEEcchh
Q 015361 328 CDVLIPCALGGVLK---RENAADV--KAKFIIEAANHPTDPEADEILSKRGV--TILPDIY 381 (408)
Q Consensus 328 ~DIliPaA~~~~I~---~~na~~i--~akiIvEgAN~p~T~eA~~iL~~rGI--~vvPD~l 381 (408)
|+.++-+.-.+..| ...++++ ++|+|+..-| ++..+.|++.|+ .+.|..+
T Consensus 303 A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~----~~~~~~L~~~GaD~VIsp~~l 359 (393)
T PRK10537 303 ARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVND----SKNLEKIKRVHPDMIFSPQLL 359 (393)
T ss_pred CCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECC----HHHHHHHHhcCCCEEECHHHH
Confidence 78887654332222 2234444 5788887664 566778888886 4556544
No 474
>PRK06182 short chain dehydrogenase; Validated
Probab=76.38 E-value=4.7 Score=38.53 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 251 ~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++++.|.|. |.+|+.+++.|.++|++|+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5789999995 999999999999999999865
No 475
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=76.33 E-value=2.6 Score=47.06 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=27.2
Q ss_pred CeEEEEccChHHHHHHHHHH-HCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~ 285 (408)
++|+|+|.|.+|+..|..+. ..|+.|+ +.|.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~-l~d~~ 337 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVR-IKDIN 337 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEE-EEeCC
Confidence 57999999999999999887 5899987 56653
No 476
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=76.31 E-value=4 Score=39.58 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=26.6
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
..|+|+|.|-.|..+|..|.+.|.+|+ |.|.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~ 33 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVT-IIERR 33 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccc-cchhc
Confidence 369999999999999999999999977 77754
No 477
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=76.30 E-value=8.4 Score=38.72 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
-.|.+|.|.|. |.||..+++++..+|++|++++.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 46899999998 999999999999999998876443
No 478
>PRK12827 short chain dehydrogenase; Provisional
Probab=76.29 E-value=4.8 Score=37.29 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCCCCeEEEEc-cChHHHHHHHHHHHCCCEEEEee
Q 015361 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 249 ~l~g~rvaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (408)
+++++++.|.| .|.+|+++|+.|.++|++|+.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 36788999999 49999999999999999998654
No 479
>PLN02253 xanthoxin dehydrogenase
Probab=76.27 E-value=4.9 Score=38.46 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.++++++.|.|. |.+|+++++.|.+.|++|+.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 477899999995 899999999999999999854
No 480
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=76.26 E-value=4.3 Score=42.70 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=31.8
Q ss_pred hCCCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 246 HGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 246 ~g~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+|..-+.+||.|.|. |-||+++++.|.++|.+|+++.
T Consensus 114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 355567889999995 9999999999999999999763
No 481
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=76.17 E-value=11 Score=39.48 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=34.0
Q ss_pred CeEEEEc-cChHHHHHHHHHHHC--CCEEEEee-cCCCeEeCCCCCCHHHHHHhHhhc
Q 015361 253 LTFVIQG-FGNVGSWAARLIHER--GGKVIAVS-DITGAVKNADGIDIHKLLAHKDKT 306 (408)
Q Consensus 253 ~rvaIqG-fGnVG~~~a~~L~~~--GakVVaVs-D~~G~iydp~GLDi~~L~~~~~~~ 306 (408)
+||+|.| -|.+|....+.+.+. .++|++++ ++ +++.+.+..++.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~----------n~~~l~~q~~~f 49 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK----------NVELLAEQAREF 49 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC----------CHHHHHHHHHHh
Confidence 6899999 799999999888654 69999997 54 456666655543
No 482
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=76.11 E-value=25 Score=37.04 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.5
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
..++|+|+|.|.||..+|..|.+ |+.|++ .|.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g-~D~ 36 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVG-FDV 36 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEE-EeC
Confidence 34789999999999999999876 688884 454
No 483
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=76.09 E-value=9.1 Score=37.84 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
-.|.+|.|.|. |.||..+++++..+|++|++++.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999997 999999999999999999876543
No 484
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=76.08 E-value=1.1e+02 Score=32.47 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=77.6
Q ss_pred CCCCceeE-EeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCccCC-----CCCCCChhHHHHHHHHhhhhhC---CC---
Q 015361 143 PYGGAKGG-IGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPA-----PDMGTNAQTMAWILDEYSKFHG---HS--- 210 (408)
Q Consensus 143 P~GGaKGG-I~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipa-----pDvgt~~~~m~wi~d~y~~~~g---~~--- 210 (408)
++-|-.-+ +-+.|...+. -+|-.++..+-|....+.. -..|-+-+|-+.++..|...-. ..
T Consensus 123 ~L~GK~v~~lF~epSTRTR-------~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~ 195 (429)
T PRK11891 123 VLEGAVLGNLFFEASTRTR-------VSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGS 195 (429)
T ss_pred ccCCcEEEEEeccCCchhH-------HHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhH
Confidence 35443333 3457765332 2677888887776554422 2234556666777777743211 11
Q ss_pred ---CceeeCcccCCCCC-CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcc---ChHHHHHHHHHHHC-CCEEE
Q 015361 211 ---PAVVTGKPIDLGGS-LGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGF---GNVGSWAARLIHER-GGKVI 279 (408)
Q Consensus 211 ---~~~~tGkp~~~GGs-~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~rvaIqGf---GnVG~~~a~~L~~~-GakVV 279 (408)
-+-....|+.-+|+ .+.-+--+..=++++++.+...|..++|+||++.|- +||....+..+... |++++
T Consensus 196 ~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~ 272 (429)
T PRK11891 196 VAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFT 272 (429)
T ss_pred HHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEE
Confidence 12236788887775 232233344445666554322233589999999997 59999999988775 99987
No 485
>PRK06114 short chain dehydrogenase; Provisional
Probab=75.94 E-value=5.2 Score=37.79 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+++++++.|.|. |.+|+.+|+.|.+.|++|+ +.|.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~-~~~r~ 41 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVA-LFDLR 41 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 478999999984 8999999999999999998 44543
No 486
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=75.88 E-value=4.4 Score=40.79 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=28.0
Q ss_pred CCCeEEEEccChHHHHHHHHHHHCCCE-EEEeecCC
Q 015361 251 RDLTFVIQGFGNVGSWAARLIHERGGK-VIAVSDIT 285 (408)
Q Consensus 251 ~g~rvaIqGfGnVG~~~a~~L~~~Gak-VVaVsD~~ 285 (408)
+++||+|+|.|+||+.+|..|...|.- -+.+.|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 567999999999999999999888852 23366763
No 487
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.81 E-value=3.6 Score=43.45 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=28.9
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
-++++|.|.|+|.-|..++++|. .|++|+ |+|.
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~~v~-v~D~ 36 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQ-NKYDVI-VYDD 36 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHh-CCCEEE-EECC
Confidence 35789999999999999999999 599887 7884
No 488
>PRK05993 short chain dehydrogenase; Provisional
Probab=75.73 E-value=4.8 Score=38.76 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=27.5
Q ss_pred CCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 251 ~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.++++.|.|. |.+|+++|+.|.++|++|+.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~ 34 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFAT 34 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3678999997 999999999999999999855
No 489
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.64 E-value=9.7 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=29.4
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
..|.+|+|.|.|.+|..+++++...|+++|.+.|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 46889999999999999999999999985444444
No 490
>PRK08017 oxidoreductase; Provisional
Probab=75.62 E-value=4.6 Score=37.82 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=26.8
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHCCCEEEEee
Q 015361 253 LTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (408)
Q Consensus 253 ~rvaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (408)
+++.|.|. |.+|+.+++.|.++|++|+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57999997 9999999999999999998653
No 491
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.59 E-value=4.7 Score=38.29 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCCCCeEEEEccC---hHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGfG---nVG~~~a~~L~~~GakVVaV 281 (408)
.++|+++.|.|.. .+|+.+|+.|.++|++|+..
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 4789999999974 79999999999999999853
No 492
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=75.56 E-value=3.9 Score=39.97 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=25.9
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
++|+|.|.|++|..+|..|.+.|..|+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEE
Confidence 47999999999999999999999887744
No 493
>PRK09242 tropinone reductase; Provisional
Probab=75.51 E-value=5.2 Score=37.71 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
.++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~ 39 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIV 39 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 478999999995 899999999999999998855
No 494
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=75.47 E-value=5.3 Score=37.98 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 248 ~~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
.+++++++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~-~~ 42 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFN-DI 42 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE-eC
Confidence 3578899999985 899999999999999998844 54
No 495
>CHL00194 ycf39 Ycf39; Provisional
Probab=75.43 E-value=4.4 Score=40.02 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=27.4
Q ss_pred CeEEEEcc-ChHHHHHHHHHHHCCCEEEEeec
Q 015361 253 LTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (408)
Q Consensus 253 ~rvaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (408)
++|.|.|. |.+|+++++.|.+.|++|++++-
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEc
Confidence 47999995 99999999999999999997753
No 496
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=75.33 E-value=3.9 Score=40.84 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=26.4
Q ss_pred CeEEEEccChHHHHHHHHHHHCCCEEEEe
Q 015361 253 LTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 253 ~rvaIqGfGnVG~~~a~~L~~~GakVVaV 281 (408)
++|+|.|.|.+|+..|..|.+.|..|+.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~ 31 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLI 31 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence 57999999999999999999999988754
No 497
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.29 E-value=4.2 Score=42.45 Aligned_cols=31 Identities=39% Similarity=0.529 Sum_probs=28.1
Q ss_pred eEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 254 rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+|.|.|.|..|..+|++|.++|++|. ++|.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 69999999999999999999999876 78864
No 498
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.13 E-value=5 Score=38.38 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcc---ChHHHHHHHHHHHCCCEEEEeecC
Q 015361 249 AIRDLTFVIQGF---GNVGSWAARLIHERGGKVIAVSDI 284 (408)
Q Consensus 249 ~l~g~rvaIqGf---GnVG~~~a~~L~~~GakVVaVsD~ 284 (408)
+++|++++|.|. +.+|+.+|+.|.++|++|+. .+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~-~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVF-TYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEE-ecC
Confidence 578999999997 58999999999999999884 443
No 499
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.12 E-value=4.9 Score=41.75 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCCCeEEEEccChHHHHHHHHHHHCCCEEEEeecCC
Q 015361 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (408)
Q Consensus 250 l~g~rvaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (408)
+.+++|.|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~-~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPR-VIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 567899999999999999999999999987 68864
No 500
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.04 E-value=5.2 Score=39.59 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcc-ChHHHHHHHHHHHCCCEEEEe
Q 015361 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (408)
Q Consensus 249 ~l~g~rvaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (408)
+++|++++|.|. +.+|..+|+.|.+.|++|+.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~ 44 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILP 44 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 578999999995 889999999999999999854
Done!