BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015362
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYP|A Chain A, Crystal Structure Of Rv0805 D66a Mutant
Length = 280
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 85/226 (37%), Gaps = 74/226 (32%)
Query: 108 KPDFIAFTGDNIFGSSTTDVA----ESMIQAFGPAMELGLPWAAVLGNHDQESTMDREEL 163
+PD I FTGD + A +++ F A +LG V+GNHD DR EL
Sbjct: 56 RPDAIVFTGD--LAAKGEPAAYRKLRGLVEPF--AAQLGAELVWVMGNHD-----DRAEL 106
Query: 164 MYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLF 223
F L+D E PS +A + IDG L +
Sbjct: 107 RKF--LLD----------EAPS-MAPLDRVCMIDG---------------------LRII 132
Query: 224 FLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIP 283
LD+ +V G +G I+ SQL WL +E L D LA H PIP
Sbjct: 133 VLDT----SVPG-HHHGEIRASQLGWL---AEELATPAPDGTI--------LALHHPPIP 176
Query: 284 ETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDH 329
+ + + ++ A RV G D++A+ GH H
Sbjct: 177 SVLDM---AVTVELRDQAALGRVLRGT--------DVRAILAGHLH 211
>pdb|3IB7|A Chain A, Crystal Structure Of Full Length Rv0805
pdb|3IB8|A Chain A, Crystal Structure Of Full Length Rv0805 In Complex With
5'-amp
Length = 330
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 85/224 (37%), Gaps = 70/224 (31%)
Query: 108 KPDFIAFTGD--NIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMY 165
+PD I FTGD + + +++ F A +LG V+GNHD DR EL
Sbjct: 66 RPDAIVFTGDLADKGEPAAYRKLRGLVEPF--AAQLGAELVWVMGNHD-----DRAELRK 118
Query: 166 FISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFL 225
F L+D E PS +A + IDG L + L
Sbjct: 119 F--LLD----------EAPS-MAPLDRVCMIDG---------------------LRIIVL 144
Query: 226 DSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPET 285
D+ +V G +G I+ SQL WL +E L D LA H PI
Sbjct: 145 DT----SVPG-HHHGEIRASQLGWL---AEELATPAPDGTI--------LALHHPPI--- 185
Query: 286 PQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDH 329
P + + + ++ A RV G D++A+ GH H
Sbjct: 186 PSVLDMAVTVELRDQAALGRVLRGT--------DVRAILAGHLH 221
>pdb|2HY1|A Chain A, Crystal Structure Of Rv0805
Length = 280
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 85/224 (37%), Gaps = 70/224 (31%)
Query: 108 KPDFIAFTGD--NIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMY 165
+PD I FTGD + + +++ F A +LG V+GNHD DR EL
Sbjct: 56 RPDAIVFTGDLADKGEPAAYRKLRGLVEPF--AAQLGAELVWVMGNHD-----DRAELRK 108
Query: 166 FISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFL 225
F L+D E PS +A + IDG L + L
Sbjct: 109 F--LLD----------EAPS-MAPLDRVCMIDG---------------------LRIIVL 134
Query: 226 DSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPET 285
D+ +V G +G I+ SQL WL +E L D LA H PIP
Sbjct: 135 DT----SVPG-HHHGEIRASQLGWL---AEELATPAPDGTI--------LALHHPPIPSV 178
Query: 286 PQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDH 329
+ + + ++ A RV G D++A+ GH H
Sbjct: 179 LDM---AVTVELRDQAALGRVLRGT--------DVRAILAGHLH 211
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 83 VTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQ-----AFGP 137
V F ++ + + R ++ DFI GDN + + D + Q F
Sbjct: 39 VPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSD 98
Query: 138 AMELGLPWAAVLGNHDQ 154
+PW + GNHD
Sbjct: 99 RALRNIPWYVLAGNHDH 115
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 83 VTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQ-----AFGP 137
V F ++ + + R ++ DFI GDN + + D + Q F
Sbjct: 18 VPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSD 77
Query: 138 AMELGLPWAAVLGNHDQ 154
+PW + GNHD
Sbjct: 78 RALRNIPWYVLAGNHDH 94
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 83 VTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQ-----AFGP 137
V F ++ + + R ++ DFI GDN + + D+ + Q F
Sbjct: 16 VPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSD 75
Query: 138 AMELGLPWAAVLGNHDQ 154
+PW + GNHD
Sbjct: 76 RSLRKVPWYVLAGNHDH 92
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 83 VTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQ-----AFGP 137
V F ++ + + R ++ DFI GDN + + D+ + Q F
Sbjct: 22 VPNAPFHTAREMANAKEIARTVQILGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSD 81
Query: 138 AMELGLPWAAVLGNHDQ 154
+PW + GNHD
Sbjct: 82 RSLRKVPWYVLAGNHDH 98
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 83 VTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQ-----AFGP 137
V F ++ + + ++ DFI GDN + + D + Q F
Sbjct: 18 VPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSD 77
Query: 138 AMELGLPWAAVLGNHDQ 154
+PW + GNHD
Sbjct: 78 PSLRNVPWHVLAGNHDH 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,097,228
Number of Sequences: 62578
Number of extensions: 491250
Number of successful extensions: 1020
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 20
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)