Query 015362
Match_columns 408
No_of_seqs 319 out of 2726
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1432 Predicted DNA repair e 100.0 4.6E-58 9.9E-63 418.4 29.0 334 49-404 41-377 (379)
2 PRK11148 cyclic 3',5'-adenosin 100.0 1.6E-29 3.5E-34 238.3 27.2 243 60-391 13-264 (275)
3 cd07383 MPP_Dcr2 Saccharomyces 100.0 3.3E-30 7.1E-35 231.6 20.3 195 61-354 2-199 (199)
4 cd07395 MPP_CSTP1 Homo sapiens 100.0 8.5E-29 1.8E-33 232.0 25.6 245 59-370 2-253 (262)
5 cd07396 MPP_Nbla03831 Homo sap 100.0 6.9E-27 1.5E-31 219.4 24.6 235 62-369 1-261 (267)
6 cd07402 MPP_GpdQ Enterobacter 99.9 6.9E-26 1.5E-30 209.5 23.2 227 63-368 1-236 (240)
7 cd00839 MPP_PAPs purple acid p 99.9 1.1E-24 2.5E-29 207.5 22.3 262 60-402 3-293 (294)
8 PLN02533 probable purple acid 99.9 2.1E-23 4.4E-28 206.9 24.0 262 60-406 138-421 (427)
9 cd07399 MPP_YvnB Bacillus subt 99.9 5.7E-23 1.2E-27 186.3 19.6 161 62-332 1-162 (214)
10 cd07401 MPP_TMEM62_N Homo sapi 99.9 5.7E-23 1.2E-27 191.3 18.6 208 64-340 2-221 (256)
11 cd07378 MPP_ACP5 Homo sapiens 99.9 7E-22 1.5E-26 186.7 22.5 239 62-369 1-265 (277)
12 cd00842 MPP_ASMase acid sphing 99.9 6.2E-22 1.3E-26 188.9 19.5 226 64-337 1-267 (296)
13 TIGR03767 P_acnes_RR metalloph 99.8 2.7E-19 5.8E-24 174.6 24.8 132 198-370 290-432 (496)
14 cd07393 MPP_DR1119 Deinococcus 99.8 4.9E-19 1.1E-23 162.6 21.0 215 64-351 1-229 (232)
15 KOG1378 Purple acid phosphatas 99.8 1.4E-18 3E-23 167.5 22.5 264 60-405 146-439 (452)
16 COG1409 Icc Predicted phosphoh 99.8 1.3E-18 2.9E-23 165.6 21.4 201 62-343 1-206 (301)
17 TIGR03729 acc_ester putative p 99.8 4.7E-19 1E-23 163.7 16.1 232 63-345 1-235 (239)
18 cd08163 MPP_Cdc1 Saccharomyces 99.8 1.1E-18 2.3E-23 162.0 18.3 132 100-285 37-176 (257)
19 PTZ00422 glideosome-associated 99.8 8.9E-18 1.9E-22 161.8 23.9 250 60-369 25-306 (394)
20 PRK11340 phosphodiesterase Yae 99.8 1.8E-17 3.9E-22 155.7 24.1 108 24-157 19-127 (271)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.8 2.2E-17 4.9E-22 146.5 18.1 185 64-344 1-186 (188)
22 KOG2679 Purple (tartrate-resis 99.8 1.2E-17 2.7E-22 148.7 14.0 225 58-350 40-275 (336)
23 TIGR03768 RPA4764 metallophosp 99.7 2.1E-16 4.6E-21 152.8 21.5 133 220-371 305-452 (492)
24 PF00149 Metallophos: Calcineu 99.7 1.5E-17 3.3E-22 144.0 9.3 79 62-156 1-79 (200)
25 cd00840 MPP_Mre11_N Mre11 nucl 99.7 1.8E-16 3.9E-21 144.7 14.1 90 63-157 1-91 (223)
26 cd07404 MPP_MS158 Microscilla 99.7 6.8E-17 1.5E-21 140.8 8.9 68 64-155 1-68 (166)
27 cd07400 MPP_YydB Bacillus subt 99.6 2.2E-15 4.8E-20 128.0 13.4 79 64-153 1-79 (144)
28 cd07388 MPP_Tt1561 Thermus the 99.6 3.5E-14 7.5E-19 128.5 18.9 71 61-154 4-74 (224)
29 cd07385 MPP_YkuE_C Bacillus su 99.6 1.6E-14 3.4E-19 132.0 14.8 79 61-158 1-79 (223)
30 KOG3770 Acid sphingomyelinase 99.6 5.5E-14 1.2E-18 139.2 18.8 294 55-405 132-475 (577)
31 COG1408 Predicted phosphohydro 99.6 3.4E-14 7.3E-19 133.2 14.1 112 24-161 12-124 (284)
32 TIGR00583 mre11 DNA repair pro 99.5 4.4E-12 9.6E-17 124.4 21.6 90 60-157 2-125 (405)
33 cd07397 MPP_DevT Myxococcus xa 99.5 7.9E-12 1.7E-16 113.5 21.1 66 62-158 1-66 (238)
34 PHA02546 47 endonuclease subun 99.4 1.4E-11 3.1E-16 119.4 19.8 86 62-155 1-89 (340)
35 PRK10966 exonuclease subunit S 99.4 1.2E-11 2.5E-16 122.3 19.3 88 62-157 1-89 (407)
36 PF12850 Metallophos_2: Calcin 99.4 5.5E-13 1.2E-17 114.5 7.2 74 271-368 80-154 (156)
37 cd08165 MPP_MPPE1 human MPPE1 99.3 1.3E-11 2.9E-16 106.0 12.4 85 65-155 1-89 (156)
38 COG0420 SbcD DNA repair exonuc 99.3 3.8E-11 8.2E-16 119.0 15.4 89 62-158 1-91 (390)
39 COG2129 Predicted phosphoester 99.3 7.8E-10 1.7E-14 97.7 21.0 72 61-154 3-76 (226)
40 TIGR00040 yfcE phosphoesterase 99.3 1.7E-10 3.6E-15 99.6 16.6 55 310-368 97-151 (158)
41 cd07394 MPP_Vps29 Homo sapiens 99.2 5.5E-10 1.2E-14 98.2 17.5 65 63-155 1-65 (178)
42 TIGR01854 lipid_A_lpxH UDP-2,3 99.2 4.4E-11 9.5E-16 109.9 10.6 74 65-155 2-81 (231)
43 PF14582 Metallophos_3: Metall 99.2 2.2E-11 4.7E-16 107.1 7.9 74 62-155 6-102 (255)
44 COG1768 Predicted phosphohydro 99.2 1.1E-10 2.5E-15 98.3 11.6 86 62-157 1-88 (230)
45 cd07379 MPP_239FB Homo sapiens 99.2 4.2E-10 9.2E-15 94.4 13.1 61 63-154 1-62 (135)
46 TIGR00619 sbcd exonuclease Sbc 99.2 6.8E-11 1.5E-15 109.9 8.7 88 62-157 1-90 (253)
47 cd00841 MPP_YfcE Escherichia c 99.2 8.8E-10 1.9E-14 94.7 14.1 48 318-369 101-148 (155)
48 cd07406 MPP_CG11883_N Drosophi 99.1 7.3E-09 1.6E-13 96.7 19.0 215 62-346 1-221 (257)
49 cd07410 MPP_CpdB_N Escherichia 99.1 1.1E-08 2.5E-13 96.5 20.2 97 62-168 1-106 (277)
50 cd00838 MPP_superfamily metall 99.1 1.1E-09 2.4E-14 90.1 11.7 69 65-153 1-69 (131)
51 cd00845 MPP_UshA_N_like Escher 99.1 1.2E-08 2.7E-13 94.9 18.9 91 62-169 1-94 (252)
52 COG2908 Uncharacterized protei 99.0 4.1E-10 8.9E-15 100.5 7.1 74 65-155 1-80 (237)
53 cd07398 MPP_YbbF-LpxH Escheric 99.0 5.8E-10 1.2E-14 101.3 7.3 74 65-155 1-82 (217)
54 PRK05340 UDP-2,3-diacylglucosa 99.0 1.1E-09 2.4E-14 101.2 8.8 77 62-155 1-83 (241)
55 cd07403 MPP_TTHA0053 Thermus t 99.0 8.1E-09 1.7E-13 85.9 12.8 37 106-153 20-56 (129)
56 cd08166 MPP_Cdc1_like_1 unchar 98.9 3E-09 6.5E-14 93.6 7.8 100 65-168 1-109 (195)
57 cd07391 MPP_PF1019 Pyrococcus 98.9 3.3E-09 7E-14 92.9 6.8 86 65-155 1-88 (172)
58 cd07411 MPP_SoxB_N Thermus the 98.9 9.4E-07 2E-11 82.8 22.8 103 62-169 1-107 (264)
59 cd07384 MPP_Cdc1_like Saccharo 98.8 6.3E-09 1.4E-13 90.8 6.9 91 65-155 1-100 (171)
60 KOG3662 Cell division control 98.8 1.2E-07 2.7E-12 91.5 14.8 109 39-157 32-146 (410)
61 PF09423 PhoD: PhoD-like phosp 98.8 2E-07 4.3E-12 94.3 16.5 204 61-331 105-377 (453)
62 cd07408 MPP_SA0022_N Staphyloc 98.8 5.4E-07 1.2E-11 84.1 17.9 92 62-169 1-94 (257)
63 COG0622 Predicted phosphoester 98.7 5.8E-07 1.3E-11 78.0 14.9 65 61-155 1-65 (172)
64 cd07412 MPP_YhcR_N Bacillus su 98.7 2.4E-06 5.2E-11 81.1 20.5 86 62-157 1-90 (288)
65 PRK09453 phosphodiesterase; Pr 98.7 3.1E-08 6.6E-13 87.6 6.5 71 62-155 1-76 (182)
66 cd07409 MPP_CD73_N CD73 ecto-5 98.7 1.3E-05 2.9E-10 75.7 23.7 93 62-158 1-97 (281)
67 TIGR00024 SbcD_rel_arch putati 98.6 6.3E-08 1.4E-12 88.1 7.2 87 62-155 15-102 (225)
68 PRK09419 bifunctional 2',3'-cy 98.6 3.2E-06 6.9E-11 94.8 20.9 218 60-346 659-896 (1163)
69 PRK09419 bifunctional 2',3'-cy 98.6 4E-06 8.7E-11 94.0 21.3 98 61-168 41-150 (1163)
70 cd07386 MPP_DNA_pol_II_small_a 98.6 1.1E-07 2.3E-12 88.1 6.8 76 65-156 2-95 (243)
71 PRK04036 DNA polymerase II sma 98.5 3.5E-07 7.5E-12 93.2 9.7 82 59-156 241-344 (504)
72 cd07407 MPP_YHR202W_N Saccharo 98.5 9.2E-06 2E-10 76.6 18.6 89 61-157 5-99 (282)
73 PRK09418 bifunctional 2',3'-cy 98.5 3E-05 6.4E-10 82.5 22.2 74 247-346 230-303 (780)
74 PHA02239 putative protein phos 98.5 5.1E-07 1.1E-11 82.8 7.8 70 62-154 1-72 (235)
75 cd07405 MPP_UshA_N Escherichia 98.4 4.6E-05 9.9E-10 72.2 19.8 83 62-158 1-90 (285)
76 PRK09558 ushA bifunctional UDP 98.4 3E-05 6.5E-10 80.4 20.0 84 61-158 34-124 (551)
77 KOG2310 DNA repair exonuclease 98.4 3.8E-05 8.3E-10 75.7 19.0 93 60-160 12-138 (646)
78 COG3540 PhoD Phosphodiesterase 98.3 5.8E-06 1.2E-10 80.5 12.2 194 100-335 160-421 (522)
79 cd07390 MPP_AQ1575 Aquifex aeo 98.3 1.2E-06 2.6E-11 76.3 6.8 78 65-155 2-82 (168)
80 COG0737 UshA 5'-nucleotidase/2 98.2 3.1E-05 6.7E-10 79.7 15.9 230 60-346 25-266 (517)
81 COG1407 Predicted ICC-like pho 98.2 4.4E-06 9.6E-11 75.2 7.6 91 61-156 19-111 (235)
82 PRK11907 bifunctional 2',3'-cy 98.2 0.00018 3.8E-09 76.8 20.7 98 61-168 115-224 (814)
83 cd08162 MPP_PhoA_N Synechococc 98.2 0.00013 2.9E-09 69.9 17.8 88 62-169 1-103 (313)
84 TIGR01530 nadN NAD pyrophospha 98.2 0.00012 2.7E-09 75.6 18.3 98 62-168 1-105 (550)
85 TIGR01390 CycNucDiestase 2',3' 98.2 0.00026 5.6E-09 74.3 20.7 98 61-168 2-110 (626)
86 PRK09420 cpdB bifunctional 2', 98.1 0.00022 4.8E-09 75.0 20.1 98 61-168 25-133 (649)
87 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.0 0.00018 3.9E-09 67.0 15.2 48 107-154 27-85 (262)
88 PRK00166 apaH diadenosine tetr 98.0 6.6E-06 1.4E-10 77.2 5.4 67 62-154 1-68 (275)
89 cd07424 MPP_PrpA_PrpB PrpA and 98.0 1.3E-05 2.8E-10 72.3 5.9 65 63-155 2-67 (207)
90 cd07382 MPP_DR1281 Deinococcus 97.9 0.0028 6E-08 58.8 20.5 61 99-169 20-80 (255)
91 cd07425 MPP_Shelphs Shewanella 97.9 3.1E-05 6.7E-10 69.8 6.9 49 107-155 31-80 (208)
92 cd07423 MPP_PrpE Bacillus subt 97.9 2.9E-05 6.2E-10 71.5 6.6 69 62-154 1-79 (234)
93 cd08164 MPP_Ted1 Saccharomyces 97.8 0.00012 2.6E-09 64.6 8.3 57 100-156 36-112 (193)
94 PRK13625 bis(5'-nucleosyl)-tet 97.7 6.3E-05 1.4E-09 69.7 6.6 42 109-154 37-78 (245)
95 PRK11439 pphA serine/threonine 97.6 5.1E-05 1.1E-09 69.0 4.2 65 62-154 17-82 (218)
96 PRK09968 serine/threonine-spec 97.6 6.9E-05 1.5E-09 68.1 4.6 65 62-154 15-80 (218)
97 cd00144 MPP_PPP_family phospho 97.6 7.4E-05 1.6E-09 68.1 4.9 55 98-155 14-68 (225)
98 cd07422 MPP_ApaH Escherichia c 97.6 9.4E-05 2E-09 68.7 4.9 65 65-155 2-67 (257)
99 cd07421 MPP_Rhilphs Rhilph pho 97.5 0.00019 4.1E-09 67.1 6.6 70 63-155 3-80 (304)
100 cd07413 MPP_PA3087 Pseudomonas 97.5 0.00014 3E-09 66.3 5.4 43 108-154 33-75 (222)
101 TIGR00668 apaH bis(5'-nucleosy 97.5 0.00015 3.3E-09 67.6 5.1 67 62-154 1-68 (279)
102 TIGR00282 metallophosphoestera 97.5 0.012 2.7E-07 54.7 17.6 72 62-157 1-73 (266)
103 COG4186 Predicted phosphoester 97.3 0.0014 3E-08 54.7 8.0 83 62-158 4-89 (186)
104 cd07387 MPP_PolD2_C PolD2 (DNA 97.2 0.001 2.2E-08 61.6 7.0 79 63-157 1-109 (257)
105 COG1311 HYS2 Archaeal DNA poly 97.1 0.00098 2.1E-08 65.7 6.5 82 59-156 223-322 (481)
106 smart00156 PP2Ac Protein phosp 96.7 0.0032 7E-08 59.1 5.7 72 62-155 28-99 (271)
107 cd07416 MPP_PP2B PP2B, metallo 96.5 0.005 1.1E-07 58.8 6.2 71 63-155 44-114 (305)
108 PTZ00235 DNA polymerase epsilo 96.4 0.014 3.1E-07 54.4 8.1 92 37-156 12-123 (291)
109 cd07414 MPP_PP1_PPKL PP1, PPKL 96.2 0.0071 1.5E-07 57.4 5.3 71 63-155 51-121 (293)
110 cd07415 MPP_PP2A_PP4_PP6 PP2A, 96.2 0.007 1.5E-07 57.2 5.0 71 63-155 43-113 (285)
111 cd07420 MPP_RdgC Drosophila me 96.2 0.008 1.7E-07 57.6 5.2 70 62-156 51-124 (321)
112 PF04042 DNA_pol_E_B: DNA poly 96.1 0.0087 1.9E-07 53.9 5.1 75 64-157 1-93 (209)
113 cd07418 MPP_PP7 PP7, metalloph 96.0 0.011 2.5E-07 57.6 5.4 72 62-155 66-138 (377)
114 PTZ00480 serine/threonine-prot 95.9 0.01 2.2E-07 56.8 4.9 71 63-155 60-130 (320)
115 COG5555 Cytolysin, a secreted 95.9 0.03 6.4E-07 51.5 7.5 74 247-332 255-335 (392)
116 cd07389 MPP_PhoD Bacillus subt 95.9 0.42 9.2E-06 43.4 15.1 53 105-158 26-105 (228)
117 PTZ00244 serine/threonine-prot 95.8 0.01 2.2E-07 56.3 4.1 70 64-155 54-123 (294)
118 cd07417 MPP_PP5_C PP5, C-termi 95.6 0.025 5.5E-07 54.2 6.3 72 62-155 60-132 (316)
119 cd07380 MPP_CWF19_N Schizosacc 95.6 0.024 5.2E-07 48.2 5.4 44 107-153 25-68 (150)
120 PTZ00239 serine/threonine prot 95.6 0.02 4.3E-07 54.6 5.4 71 63-155 44-114 (303)
121 cd07381 MPP_CapA CapA and rela 95.5 0.44 9.6E-06 43.7 14.0 73 246-345 160-233 (239)
122 KOG4419 5' nucleotidase [Nucle 95.4 0.12 2.6E-06 52.5 10.0 61 245-335 212-273 (602)
123 cd07419 MPP_Bsu1_C Arabidopsis 95.3 0.068 1.5E-06 51.3 8.1 43 111-155 85-127 (311)
124 COG1692 Calcineurin-like phosp 95.3 1 2.2E-05 41.0 14.5 80 62-169 1-81 (266)
125 smart00854 PGA_cap Bacterial c 95.2 0.59 1.3E-05 43.0 13.6 36 309-345 196-231 (239)
126 KOG3325 Membrane coat complex 94.0 0.26 5.6E-06 41.0 7.2 77 309-398 97-177 (183)
127 PF13277 YmdB: YmdB-like prote 93.8 2.4 5.2E-05 39.0 13.7 159 100-333 19-178 (253)
128 PF09587 PGA_cap: Bacterial ca 90.9 11 0.00025 34.7 14.9 76 244-345 167-242 (250)
129 KOG2863 RNA lariat debranching 88.3 0.76 1.6E-05 44.0 4.7 49 107-155 29-88 (456)
130 PRK09453 phosphodiesterase; Pr 84.0 1.8 3.8E-05 37.9 4.7 31 319-350 118-148 (182)
131 KOG3818 DNA polymerase epsilon 83.6 3.6 7.9E-05 40.5 6.8 79 60-157 281-371 (525)
132 COG2949 SanA Uncharacterized m 82.6 11 0.00025 33.4 8.9 44 97-145 82-125 (235)
133 KOG0374 Serine/threonine speci 82.4 1.7 3.8E-05 41.9 4.2 72 63-156 60-132 (331)
134 KOG3947 Phosphoesterases [Gene 81.4 1.6 3.4E-05 40.4 3.4 69 60-157 60-128 (305)
135 KOG0371 Serine/threonine prote 73.5 4.5 9.9E-05 37.1 3.9 48 106-155 83-131 (319)
136 cd07384 MPP_Cdc1_like Saccharo 73.4 4.1 8.9E-05 35.3 3.6 13 319-331 134-146 (171)
137 cd08166 MPP_Cdc1_like_1 unchar 67.3 6.7 0.00014 34.8 3.6 36 275-331 112-147 (195)
138 TIGR01319 glmL_fam conserved h 66.9 9.9 0.00021 38.2 5.1 51 101-155 113-163 (463)
139 cd08164 MPP_Ted1 Saccharomyces 65.3 4.9 0.00011 35.6 2.4 13 319-331 144-156 (193)
140 KOG0372 Serine/threonine speci 64.2 8.6 0.00019 35.1 3.7 43 110-156 71-115 (303)
141 COG4186 Predicted phosphoester 62.6 9.5 0.00021 32.4 3.4 47 271-337 107-153 (186)
142 PF13941 MutL: MutL protein 57.5 20 0.00043 36.2 5.4 50 102-155 118-167 (457)
143 PF02350 Epimerase_2: UDP-N-ac 57.2 27 0.00059 34.0 6.2 45 97-151 56-100 (346)
144 COG2248 Predicted hydrolase (m 56.9 19 0.00042 33.1 4.6 40 58-119 173-212 (304)
145 PRK09968 serine/threonine-spec 55.9 12 0.00026 33.8 3.3 31 319-351 179-209 (218)
146 cd04502 SGNH_hydrolase_like_7 55.8 49 0.0011 28.0 7.0 51 98-148 40-95 (171)
147 KOG0373 Serine/threonine speci 54.1 17 0.00036 32.7 3.7 45 107-155 70-117 (306)
148 COG0381 WecB UDP-N-acetylgluco 53.5 36 0.00079 33.4 6.2 47 96-152 80-127 (383)
149 PF06874 FBPase_2: Firmicute f 51.3 16 0.00034 38.1 3.5 52 98-156 174-225 (640)
150 KOG2476 Uncharacterized conser 50.4 29 0.00063 34.7 5.0 69 62-152 6-75 (528)
151 PRK05340 UDP-2,3-diacylglucosa 49.7 13 0.00028 34.1 2.5 22 309-331 178-199 (241)
152 PF05582 Peptidase_U57: YabG p 45.8 22 0.00048 33.3 3.3 26 92-117 138-163 (287)
153 PF12273 RCR: Chitin synthesis 45.1 18 0.00038 29.8 2.3 8 11-18 1-8 (130)
154 TIGR02855 spore_yabG sporulati 43.4 22 0.00048 33.1 2.9 25 93-117 138-162 (283)
155 TIGR03413 GSH_gloB hydroxyacyl 43.3 41 0.00088 31.0 4.7 44 111-155 120-167 (248)
156 TIGR03568 NeuC_NnaA UDP-N-acet 40.8 73 0.0016 31.2 6.4 48 97-154 82-130 (365)
157 PF14639 YqgF: Holliday-juncti 39.7 49 0.0011 28.0 4.3 56 96-154 51-108 (150)
158 PF13253 DUF4044: Protein of u 39.5 83 0.0018 19.5 4.1 28 1-28 1-28 (35)
159 COG2047 Uncharacterized protei 39.2 69 0.0015 28.9 5.2 44 107-151 82-125 (258)
160 cd07380 MPP_CWF19_N Schizosacc 36.9 43 0.00093 28.3 3.5 51 274-330 71-121 (150)
161 PRK10241 hydroxyacylglutathion 34.9 58 0.0013 30.0 4.4 43 112-155 122-168 (251)
162 cd07424 MPP_PrpA_PrpB PrpA and 33.7 41 0.00089 29.9 3.1 27 319-346 168-194 (207)
163 COG2875 CobM Precorrin-4 methy 33.1 1.3E+02 0.0029 27.5 6.0 33 111-150 79-111 (254)
164 PF03437 BtpA: BtpA family; I 33.0 1.7E+02 0.0038 27.1 7.1 80 63-168 140-219 (254)
165 TIGR01769 GGGP geranylgeranylg 30.7 2E+02 0.0044 25.7 6.9 52 98-155 14-66 (205)
166 cd04501 SGNH_hydrolase_like_4 30.6 1.7E+02 0.0037 24.8 6.5 19 98-116 49-67 (183)
167 TIGR00619 sbcd exonuclease Sbc 30.5 1.2E+02 0.0025 28.1 5.6 29 318-348 212-240 (253)
168 PRK10380 hypothetical protein; 28.9 1E+02 0.0022 21.3 3.5 28 356-390 5-32 (63)
169 COG2332 CcmE Cytochrome c-type 28.8 82 0.0018 26.5 3.7 32 7-38 4-35 (153)
170 PF00582 Usp: Universal stress 27.9 2E+02 0.0044 22.3 6.2 49 97-149 91-140 (140)
171 PRK11439 pphA serine/threonine 27.6 70 0.0015 28.7 3.5 53 108-168 15-69 (218)
172 COG1646 Predicted phosphate-bi 27.3 2E+02 0.0044 26.3 6.2 50 99-154 32-82 (240)
173 KOG0377 Protein serine/threoni 27.3 36 0.00077 33.9 1.6 42 112-155 196-237 (631)
174 cd01822 Lysophospholipase_L1_l 27.2 2.2E+02 0.0048 23.8 6.6 51 98-148 54-107 (177)
175 cd07425 MPP_Shelphs Shewanella 26.6 77 0.0017 28.3 3.6 19 314-332 162-180 (208)
176 PF07423 DUF1510: Protein of u 26.2 55 0.0012 29.6 2.5 18 11-28 14-31 (217)
177 TIGR01006 polys_exp_MPA1 polys 26.1 87 0.0019 28.2 3.9 6 1-6 1-6 (226)
178 KOG0375 Serine-threonine phosp 25.5 67 0.0015 31.2 3.0 44 111-156 117-160 (517)
179 PRK13254 cytochrome c-type bio 25.1 1.1E+02 0.0023 25.9 3.9 19 9-27 6-24 (148)
180 COG3855 Fbp Uncharacterized pr 24.3 1E+02 0.0022 31.1 4.0 50 100-156 182-231 (648)
181 PLN02398 hydroxyacylglutathion 24.0 1.3E+02 0.0028 29.1 4.8 43 112-155 201-247 (329)
182 cd07386 MPP_DNA_pol_II_small_a 24.0 52 0.0011 30.0 2.0 27 320-347 192-218 (243)
183 KOG2756 Predicted Mg2+-depende 23.9 1.3E+02 0.0028 28.2 4.4 24 96-119 230-253 (349)
184 KOG4184 Predicted sugar kinase 23.7 88 0.0019 30.3 3.4 28 94-121 224-251 (478)
185 PRK13150 cytochrome c-type bio 23.6 1.2E+02 0.0027 25.9 4.0 30 8-37 5-34 (159)
186 PF00072 Response_reg: Respons 23.2 2.4E+02 0.0051 21.3 5.5 50 98-153 33-82 (112)
187 TIGR01768 GGGP-family geranylg 22.6 2.7E+02 0.0058 25.3 6.2 50 100-155 19-68 (223)
188 cd01828 sialate_O-acetylestera 22.3 2.7E+02 0.0058 23.2 6.1 50 98-148 39-93 (169)
189 cd02067 B12-binding B12 bindin 22.3 3.7E+02 0.008 21.1 6.6 53 98-154 40-92 (119)
190 PTZ00486 apyrase Superfamily; 21.9 1.7E+02 0.0036 28.4 5.0 15 61-75 55-69 (352)
191 cd07423 MPP_PrpE Bacillus subt 21.9 1.1E+02 0.0025 27.7 3.8 32 318-351 180-211 (234)
192 PRK13600 putative ribosomal pr 21.7 3.3E+02 0.0073 20.5 5.6 44 98-149 19-62 (84)
193 PHA02291 hypothetical protein 21.4 1E+02 0.0022 24.2 2.8 21 10-30 4-24 (132)
194 COG2086 FixA Electron transfer 21.0 3.1E+02 0.0066 25.6 6.4 27 95-122 98-124 (260)
195 TIGR00236 wecB UDP-N-acetylglu 20.5 2.7E+02 0.0058 26.8 6.4 44 97-150 75-118 (365)
196 COG0434 SgcQ Predicted TIM-bar 20.5 4E+02 0.0087 24.5 6.8 70 62-150 144-213 (263)
197 cd01836 FeeA_FeeB_like SGNH_hy 20.3 2.3E+02 0.0051 24.2 5.4 9 106-114 65-73 (191)
198 PF06925 MGDG_synth: Monogalac 20.2 1E+02 0.0022 26.3 3.0 21 97-117 78-98 (169)
199 cd03786 GT1_UDP-GlcNAc_2-Epime 20.1 3E+02 0.0065 26.2 6.7 45 97-151 77-121 (363)
No 1
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=100.00 E-value=4.6e-58 Score=418.38 Aligned_cols=334 Identities=55% Similarity=0.967 Sum_probs=293.5
Q ss_pred CCCCCccccCCCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHH
Q 015362 49 YPDLPLRFRYDGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVA 128 (408)
Q Consensus 49 ~~~~~~~~~~~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~ 128 (408)
+..+++++..+++|||+|+||+|++.....+|+++.|.+..+|.|++|..++.++|+.++|||||+|||+|++....++.
T Consensus 41 ~~~~~lr~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~ 120 (379)
T KOG1432|consen 41 NGRLKLRFREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAA 120 (379)
T ss_pred CcceeeeecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHH
Confidence 44567888889999999999999999988899999999999999999999999999999999999999999997777888
Q ss_pred HHHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeC
Q 015362 129 ESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYG 208 (408)
Q Consensus 129 ~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~ 208 (408)
..+.++++|.++.++||.+++||||....+++.+++++...+|++..+++|+.. ... .+.|.++|.+.+.+
T Consensus 121 ~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg--------~~~-~~~g~gnyn~~i~~ 191 (379)
T KOG1432|consen 121 TSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDG--------HMY-IIDGFGNYNLQIEG 191 (379)
T ss_pred HHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCccc--------cee-eeecccceEEEecc
Confidence 899999999999999999999999999999999999999999999999988742 111 26788999999998
Q ss_pred CCCCCCCCcceeEEEEEeCCCCCCcC-CcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccc
Q 015362 209 PPGSHLANSSILNLFFLDSGDRETVR-GVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQ 287 (408)
Q Consensus 209 ~~~~~~~~~~~~~~i~LDS~~~~~~~-~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~ 287 (408)
..++.....+.+.+++||++.+...+ ...+|+++..+|+.||+.+..+-... +. .-...|-++|+|+|+.++..
T Consensus 192 ~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~----~~-~~~P~p~La~~HIP~~E~~~ 266 (379)
T KOG1432|consen 192 AIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEP----NS-KYNPQPGLAFFHIPLPEFLE 266 (379)
T ss_pred CCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcc----cC-ccCCCCceEEEEcccHHHhh
Confidence 88887777788999999999987776 45689999999999999987442210 00 01223899999999998876
Q ss_pred ccc-CCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCCCC-eEEEEeCCcCCCCCCCCCCCCceEEE
Q 015362 288 LYY-QNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNG-IWFCYGGGIGYHGYGKAGWPRRARII 365 (408)
Q Consensus 288 ~~~-~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~g-i~~~~~~~sg~~~~~~~~~~~g~rv~ 365 (408)
.+. ....|.++|++.++..++.++..|.+..+|++|||||+|.||||+...| +|+||+|++||++||..+|.|++||+
T Consensus 267 ~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv~ 346 (379)
T KOG1432|consen 267 LESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYGIGGWERRARVF 346 (379)
T ss_pred ccCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcCcCCcccceEEE
Confidence 664 4467889999999999999999999888999999999999999999999 99999999999999977899999999
Q ss_pred EEecCCCCCCccccceeEEEEEccCCCCCcccceeeecc
Q 015362 366 LAEAGKGENGWMEVEMIKTWKRLDDQRLSKIDEQVLWEM 404 (408)
Q Consensus 366 ~i~~~~~~~~~~~~~~~~tw~r~~~~~~~~~~~~~~~~~ 404 (408)
|++..+ .+|+||+|++++..+++|+|.+|.-
T Consensus 347 e~d~~~--------~~IkTWKRl~d~~~~~~D~q~l~d~ 377 (379)
T KOG1432|consen 347 ELDLNK--------DRIKTWKRLDDKPLSVIDYQLLYDG 377 (379)
T ss_pred Eccccc--------cccceeeecCCCCcceeeeEEEecc
Confidence 999654 6799999999999999999999974
No 2
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.97 E-value=1.6e-29 Score=238.28 Aligned_cols=243 Identities=20% Similarity=0.222 Sum_probs=155.8
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc--CCCEEEEcCCcCCCCCcccHHHHHHHHHhh
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE--KPDFIAFTGDNIFGSSTTDVAESMIQAFGP 137 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~pD~vv~~GDli~~~~~~~~~~~~~~~l~~ 137 (408)
++|||+||||+|+.........+ ....+.++.+.+.+++. +||+||++||+++... .+.++.+.+.++
T Consensus 13 ~~~~i~~iSD~Hl~~~~~~~~~~--------~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~-~~~~~~~~~~l~- 82 (275)
T PRK11148 13 ARVRILQITDTHLFADEHETLLG--------VNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS-SEAYQHFAEGIA- 82 (275)
T ss_pred CCEEEEEEcCcccCCCCCCceec--------cCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC-HHHHHHHHHHHh-
Confidence 57999999999985432111000 01123345555555553 6999999999887543 445556655554
Q ss_pred hHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCc
Q 015362 138 AMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANS 217 (408)
Q Consensus 138 ~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~ 217 (408)
+.+.|+|+|+||||.... +.+++... ... ..++.+ ..
T Consensus 83 --~l~~Pv~~v~GNHD~~~~-----~~~~~~~~-----~~~--------------------~~~~~~-~~---------- 119 (275)
T PRK11148 83 --PLRKPCVWLPGNHDFQPA-----MYSALQDA-----GIS--------------------PAKHVL-IG---------- 119 (275)
T ss_pred --hcCCcEEEeCCCCCChHH-----HHHHHhhc-----CCC--------------------ccceEE-ec----------
Confidence 347999999999998421 12211110 000 011111 11
Q ss_pred ceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCccccc
Q 015362 218 SILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQF 297 (408)
Q Consensus 218 ~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~ 297 (408)
..+++++|||.... . ..|.++++|++||+++|++. +.++++||+||||......+.+...
T Consensus 120 ~~~~~i~Lds~~~g----~-~~G~l~~~ql~wL~~~L~~~------------~~~~~vv~~hH~P~~~~~~~~d~~~--- 179 (275)
T PRK11148 120 EHWQILLLDSQVFG----V-PHGELSEYQLEWLERKLADA------------PERHTLVLLHHHPLPAGCAWLDQHS--- 179 (275)
T ss_pred CCEEEEEecCCCCC----C-cCCEeCHHHHHHHHHHHhhC------------CCCCeEEEEcCCCCCCCcchhhccC---
Confidence 23679999996432 1 46889999999999998775 3467788888866543333322211
Q ss_pred ccccccCCCCh-HHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCC--C----CCCCCCCCceEEEEEecC
Q 015362 298 QEAVACSRVNS-GVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYH--G----YGKAGWPRRARIILAEAG 370 (408)
Q Consensus 298 ~e~~~~~~~~~-~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~--~----~~~~~~~~g~rv~~i~~~ 370 (408)
..|. ++++.|.++++|+++||||+|. .++..++|+.++.+|++++. . ++....++|+|+++++.
T Consensus 180 -------l~n~~~l~~ll~~~~~v~~vl~GH~H~-~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~- 250 (275)
T PRK11148 180 -------LRNAHELAEVLAKFPNVKAILCGHIHQ-ELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHA- 250 (275)
T ss_pred -------CCCHHHHHHHHhcCCCceEEEecccCh-HHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcC-
Confidence 2344 6777777877899999999999 57778899999999998863 1 11124567999999974
Q ss_pred CCCCCccccceeEEEEEccCC
Q 015362 371 KGENGWMEVEMIKTWKRLDDQ 391 (408)
Q Consensus 371 ~~~~~~~~~~~~~tw~r~~~~ 391 (408)
+| ...+++.|++.+
T Consensus 251 ~g-------~~~~~~~~~~~~ 264 (275)
T PRK11148 251 DG-------SLETEVHRLADT 264 (275)
T ss_pred CC-------cEEEEEEEcCCC
Confidence 32 345666888773
No 3
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.97 E-value=3.3e-30 Score=231.59 Aligned_cols=195 Identities=47% Similarity=0.949 Sum_probs=153.8
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCccc-HHHHHHHHHhhhH
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTD-VAESMIQAFGPAM 139 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~-~~~~~~~~l~~~~ 139 (408)
+|||+||||+|++...... +....+..+.+.+.+++++.+||+||++||+++...... .+..+.+.++.+.
T Consensus 2 ~~ki~~isDlH~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~ 73 (199)
T cd07383 2 KFKILQFADLHFGEGEGTC--------EGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMI 73 (199)
T ss_pred ceEEEEEeeecccCCCCCC--------CcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHH
Confidence 6999999999998765321 011134456778888888999999999999987665432 4566777777666
Q ss_pred hcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcce
Q 015362 140 ELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSI 219 (408)
Q Consensus 140 ~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~ 219 (408)
..++|+++++||||.
T Consensus 74 ~~~~p~~~~~GNHD~----------------------------------------------------------------- 88 (199)
T cd07383 74 DRKIPWAATFGNHDG----------------------------------------------------------------- 88 (199)
T ss_pred HcCCCEEEECccCCC-----------------------------------------------------------------
Confidence 678999999999991
Q ss_pred eEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCcccccc--CCccccc
Q 015362 220 LNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYY--QNIVGQF 297 (408)
Q Consensus 220 ~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~--~~~~g~~ 297 (408)
+|++.++|++||+++++++... .....+.++|+|||+.+..+.|. ....|..
T Consensus 89 -------------------~g~l~~~ql~wL~~~l~~~~~~-------~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~ 142 (199)
T cd07383 89 -------------------YDWIRPSQIEWFKETSAALKKK-------YGKPIPSLAFFHIPLPEYREVWEGKGKVPGIN 142 (199)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHHhhc-------cCCCCcceEEEecChHHHHhhhcccCCCCccC
Confidence 0236789999999999987421 12457999999999988776665 4555777
Q ss_pred ccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCCCCC
Q 015362 298 QEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYG 354 (408)
Q Consensus 298 ~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~~~~ 354 (408)
.|...+...++++++.+.+.++|+++||||+|.++++...+|+++|+++.+|+++||
T Consensus 143 ~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~~~y~ 199 (199)
T cd07383 143 NEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGYGGYG 199 (199)
T ss_pred CcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCCCCCC
Confidence 776666667889999999989999999999999999999999999999999998885
No 4
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.97 E-value=8.5e-29 Score=232.04 Aligned_cols=245 Identities=21% Similarity=0.241 Sum_probs=157.8
Q ss_pred CCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc--CCCEEEEcCCcCCCCCccc----HHHHHH
Q 015362 59 DGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE--KPDFIAFTGDNIFGSSTTD----VAESMI 132 (408)
Q Consensus 59 ~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~pD~vv~~GDli~~~~~~~----~~~~~~ 132 (408)
+++++|+++||+|++....... .....| ......++.+.+.+++. +||+|+++||+++.....+ .+..+.
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~ 77 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLE--GGGDEW--DEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLK 77 (262)
T ss_pred CCCEEEEEecCCccchhhcccc--Cchhhh--hhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHH
Confidence 3689999999999996432110 000111 01223456666777766 9999999999987765321 223444
Q ss_pred HHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCC
Q 015362 133 QAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGS 212 (408)
Q Consensus 133 ~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~ 212 (408)
+.++. ...++|+++++||||.......+.+..|.. ..|..+|++...
T Consensus 78 ~~~~~-~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~---------------------------~~g~~~y~~~~~----- 124 (262)
T cd07395 78 DVLSL-LDPDIPLVCVCGNHDVGNTPTEESIKDYRD---------------------------VFGDDYFSFWVG----- 124 (262)
T ss_pred HHHhh-ccCCCcEEEeCCCCCCCCCCChhHHHHHHH---------------------------HhCCcceEEEEC-----
Confidence 44443 234789999999999965443333333321 122335666543
Q ss_pred CCCCcceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCC
Q 015362 213 HLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQN 292 (408)
Q Consensus 213 ~~~~~~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~ 292 (408)
.+++++|||..+... ...+.+..+|++||+++|++.++ .+.+++|||+|||++.........
T Consensus 125 ------~~~~i~lds~~~~~~---~~~~~~~~~ql~WL~~~L~~~~~---------~~~~~~iv~~H~P~~~~~~~~~~~ 186 (262)
T cd07395 125 ------GVFFIVLNSQLFFDP---SEVPELAQAQDVWLEEQLEIAKE---------SDCKHVIVFQHIPWFLEDPDEEDS 186 (262)
T ss_pred ------CEEEEEeccccccCc---cccccchHHHHHHHHHHHHHHHh---------ccCCcEEEEECcCCccCCCCCCcc
Confidence 368999999754321 12356899999999999988742 246789999999997533221111
Q ss_pred cccccccccccCCCCh-HHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCCCCCCCCCCCceEEEEEecC
Q 015362 293 IVGQFQEAVACSRVNS-GVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAEAG 370 (408)
Q Consensus 293 ~~g~~~e~~~~~~~~~-~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~~~~~~~~~~g~rv~~i~~~ 370 (408)
.. .....+. ++.+.+.++ +|+++||||+|.+.. ..+.|+.++.++++|+. ++ ..++|+|+++++.+
T Consensus 187 ~~-------~~~~~~~~~l~~ll~~~-~V~~v~~GH~H~~~~-~~~~g~~~~~~~~~~~~-~~--~~~~g~~~~~v~~~ 253 (262)
T cd07395 187 YF-------NIPKSVRKPLLDKFKKA-GVKAVFSGHYHRNAG-GRYGGLEMVVTSAIGAQ-LG--NDKSGLRIVKVTED 253 (262)
T ss_pred cC-------CcCHHHHHHHHHHHHhc-CceEEEECccccCCc-eEECCEEEEEcCceecc-cC--CCCCCcEEEEECCC
Confidence 00 0111233 566666665 699999999999755 56789999888888864 33 34789999999843
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.96 E-value=6.9e-27 Score=219.40 Aligned_cols=235 Identities=24% Similarity=0.255 Sum_probs=152.4
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
|||+++||+|++.......+. + ......++.+.+.+++.+||+||++||+++... .+..+.+....+.+...
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~-----~--~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~-~~~~~~~~~~~~~l~~l 72 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRY-----Y--RNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDN-ARAEEALDAVLAILDRL 72 (267)
T ss_pred CeEEEEeccccccCCCcccch-----H--HHhHHHHHHHHHHHHcCCCCEEEECCCeecCCC-chHHHHHHHHHHHHHhc
Confidence 699999999988653211000 0 012344566677777788999999999986554 31223333333333345
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcceeE
Q 015362 142 GLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILN 221 (408)
Q Consensus 142 ~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~ 221 (408)
++|+++++||||........ .. .. .. ...+..+|++... +++
T Consensus 73 ~~p~~~v~GNHD~~~~~~~~-~~-----~~-------~~--------------~~~~~~yysf~~~-----------~~~ 114 (267)
T cd07396 73 KGPVHHVLGNHDLYNPSREY-LL-----LY-------TL--------------LGLGAPYYSFSPG-----------GIR 114 (267)
T ss_pred CCCEEEecCccccccccHhh-hh-----cc-------cc--------------cCCCCceEEEecC-----------CcE
Confidence 79999999999996543211 00 00 00 1123446777554 368
Q ss_pred EEEEeCCCCCCcC---C----------------------cCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEE
Q 015362 222 LFFLDSGDRETVR---G----------------------VRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLA 276 (408)
Q Consensus 222 ~i~LDS~~~~~~~---~----------------------~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv 276 (408)
+++|||...+... . ....|.++++|++||+++|++.+ .+..++||
T Consensus 115 ~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~----------~~~~~viV 184 (267)
T cd07396 115 FIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEAD----------ANGEKVII 184 (267)
T ss_pred EEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHH----------hcCCeEEE
Confidence 9999996542110 0 01257899999999999998874 24578999
Q ss_pred EecCCCCCccccccCCcccccccccccCCCC-hHHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCCCCCC
Q 015362 277 FFHIPIPETPQLYYQNIVGQFQEAVACSRVN-SGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGK 355 (408)
Q Consensus 277 ~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~-~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~~~~~ 355 (408)
|+|||+..... . .. ....+ ..+++.+.++++|+++||||+|.+. ....+|+.++.+|+++.+ +
T Consensus 185 ~~Hhp~~~~~~-~-~~----------~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~-~~~~~gi~~~~~~a~~~~--~- 248 (267)
T cd07396 185 FSHFPLHPEST-S-PH----------GLLWNHEEVLSILRAYGCVKACISGHDHEGG-YAQRHGIHFLTLEGMVET--P- 248 (267)
T ss_pred EEeccCCCCCC-C-cc----------ccccCHHHHHHHHHhCCCEEEEEcCCcCCCC-ccccCCeeEEEechhhcC--C-
Confidence 99999865321 0 00 01123 4677777776789999999999964 456899999999999876 3
Q ss_pred CCCCCceEEEEEec
Q 015362 356 AGWPRRARIILAEA 369 (408)
Q Consensus 356 ~~~~~g~rv~~i~~ 369 (408)
+....+.++++..
T Consensus 249 -~~~~~~~~~~~~~ 261 (267)
T cd07396 249 -PESNAFGVVIVYE 261 (267)
T ss_pred -CCCCceEEEEEeC
Confidence 3355777888874
No 6
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.95 E-value=6.9e-26 Score=209.51 Aligned_cols=227 Identities=21% Similarity=0.244 Sum_probs=149.4
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc--CCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE--KPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
||++|||+|++......+++. .....++.+.+.+++. +||+||++||+++... .+.++.+.+.++.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~--------~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~l~~--- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGV--------DTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS-PESYERLRELLAA--- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecCc--------CHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC-HHHHHHHHHHHhh---
Confidence 699999999997542111110 1123456677777776 9999999999887654 3445556555543
Q ss_pred cCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCccee
Q 015362 141 LGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSIL 220 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~ 220 (408)
.++|+++|+||||.... ..++ +.... ...+..+|.+.+. .+
T Consensus 69 ~~~p~~~v~GNHD~~~~-----~~~~---~~~~~--------------------~~~~~~~~~~~~~-----------~~ 109 (240)
T cd07402 69 LPIPVYLLPGNHDDRAA-----MRAV---FPELP--------------------PAPGFVQYVVDLG-----------GW 109 (240)
T ss_pred cCCCEEEeCCCCCCHHH-----HHHh---hcccc--------------------ccccccceeEecC-----------CE
Confidence 38999999999998421 1111 11000 0112335666554 37
Q ss_pred EEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCcccccccc
Q 015362 221 NLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEA 300 (408)
Q Consensus 221 ~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~ 300 (408)
++++|||..... ..|.++++|++||++.|++. ..+++|+++||||......+.+..
T Consensus 110 ~~i~lds~~~~~-----~~~~~~~~ql~wL~~~L~~~------------~~~~~il~~H~pp~~~~~~~~~~~------- 165 (240)
T cd07402 110 RLILLDSSVPGQ-----HGGELCAAQLDWLEAALAEA------------PDKPTLVFLHHPPFPVGIAWMDAI------- 165 (240)
T ss_pred EEEEEeCCCCCC-----cCCEECHHHHHHHHHHHHhC------------CCCCEEEEECCCCccCCchhhhhh-------
Confidence 899999964321 45679999999999998765 357899999999975422111110
Q ss_pred cccCCCC-hHHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCCC--CCC----CCCCCceEEEEEe
Q 015362 301 VACSRVN-SGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHG--YGK----AGWPRRARIILAE 368 (408)
Q Consensus 301 ~~~~~~~-~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~~--~~~----~~~~~g~rv~~i~ 368 (408)
...+ .++++.+.++++|+++||||.|. ......+|+.++.++++|+.- ..+ .+...|++.+.+.
T Consensus 166 ---~~~~~~~~~~~l~~~~~v~~v~~GH~H~-~~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (240)
T cd07402 166 ---GLRNAEALAAVLARHPNVRAILCGHVHR-PIDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLH 236 (240)
T ss_pred ---hCCCHHHHHHHHhcCCCeeEEEECCcCc-hHHeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEe
Confidence 0123 46777787776799999999999 566788999999999988641 111 1233478877775
No 7
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.93 E-value=1.1e-24 Score=207.55 Aligned_cols=262 Identities=15% Similarity=0.103 Sum_probs=156.5
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcc--cHHHHHHHHHhh
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTT--DVAESMIQAFGP 137 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~--~~~~~~~~~l~~ 137 (408)
.++||++++|+|.+.... .++++.+.+. ..+||+||++||+++..... ..+..+.+.+++
T Consensus 3 ~~~~f~v~gD~~~~~~~~----------------~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~ 64 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNS----------------TNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEP 64 (294)
T ss_pred CcEEEEEEEECCCCCCCc----------------HHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHH
Confidence 579999999999863211 1223333222 37999999999998765543 456677777776
Q ss_pred hHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCc
Q 015362 138 AMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANS 217 (408)
Q Consensus 138 ~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~ 217 (408)
+ ...+|+++++||||+...........+ +. ....+... ....+..+|++.+.+
T Consensus 65 ~-~~~~P~~~~~GNHD~~~~~~~~~~~~~---~~---~~~~~~~~-----------~~~~~~~~Ysf~~g~--------- 117 (294)
T cd00839 65 L-ASYVPYMVTPGNHEADYNFSFYKIKAF---FP---RFRFPHSP-----------SGSTSNLWYSFDVGP--------- 117 (294)
T ss_pred H-HhcCCcEEcCcccccccCCCCcccccc---cc---cccccCCC-----------CCCCCCceEEEeeCC---------
Confidence 3 557999999999999765322110000 00 00000000 011234467877653
Q ss_pred ceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCccccc
Q 015362 218 SILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQF 297 (408)
Q Consensus 218 ~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~ 297 (408)
++|++|||..... .+.+..+|++||++.|++..+ ...+++||++|||++......... ..
T Consensus 118 --v~fi~Lds~~~~~------~~~~~~~q~~WL~~~L~~~~~---------~~~~~~iv~~H~P~~~~~~~~~~~--~~- 177 (294)
T cd00839 118 --VHFVSLSTEVDFY------GDGPGSPQYDWLEADLAKVDR---------SKTPWIIVMGHRPMYCSNTDHDDC--IE- 177 (294)
T ss_pred --EEEEEEecccccc------cCCCCcHHHHHHHHHHHHhcc---------cCCCeEEEEeccCcEecCcccccc--ch-
Confidence 7899999964321 356899999999999988742 134579999999997543211100 00
Q ss_pred ccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccC---------------CCCeEEEEeCCcCCCCCC-----C--
Q 015362 298 QEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGN---------------LNGIWFCYGGGIGYHGYG-----K-- 355 (408)
Q Consensus 298 ~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~---------------~~gi~~~~~~~sg~~~~~-----~-- 355 (408)
.......+.+.|.++ +|+++||||+|.+++... .+|+..+..|+.|...+. +
T Consensus 178 -----~~~~~~~l~~ll~~~-~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~ 251 (294)
T cd00839 178 -----GEKMRAALEDLFYKY-GVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPP 251 (294)
T ss_pred -----hHHHHHHHHHHHHHh-CCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCC
Confidence 001122455555665 699999999999764432 257777666666642211 0
Q ss_pred -----CCCCCceEEEEEecCCCCCCccccceeEEEEEccCCCCCcccceeee
Q 015362 356 -----AGWPRRARIILAEAGKGENGWMEVEMIKTWKRLDDQRLSKIDEQVLW 402 (408)
Q Consensus 356 -----~~~~~g~rv~~i~~~~~~~~~~~~~~~~tw~r~~~~~~~~~~~~~~~ 402 (408)
.....|+-++++.-.+ .-...|++..+|. ++|.-+|.
T Consensus 252 ~~~~~~~~~~g~~~~~~~~~t--------~l~~~~~~~~~g~--v~D~f~i~ 293 (294)
T cd00839 252 AWSAFRESDYGFGRLTVHNST--------HLHFEWIRNDDGV--VIDSFWII 293 (294)
T ss_pred CceEEEeccCCEEEEEEEecC--------eEEEEEEECCCCe--EEEEEEEe
Confidence 0123577777776211 3445566666654 78876653
No 8
>PLN02533 probable purple acid phosphatase
Probab=99.92 E-value=2.1e-23 Score=206.94 Aligned_cols=262 Identities=18% Similarity=0.181 Sum_probs=157.2
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhH
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAM 139 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 139 (408)
.++||++++|+|..... +...+.+++.+||+|+++||+++.+.....+..+.+.++++
T Consensus 138 ~~~~f~v~GDlG~~~~~---------------------~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l- 195 (427)
T PLN02533 138 FPIKFAVSGDLGTSEWT---------------------KSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPL- 195 (427)
T ss_pred CCeEEEEEEeCCCCccc---------------------HHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhH-
Confidence 47999999999753221 12334456779999999999987654333456666666663
Q ss_pred hcCCCEEEEcCCCCCCCCCC--HHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCc
Q 015362 140 ELGLPWAAVLGNHDQESTMD--REELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANS 217 (408)
Q Consensus 140 ~~~~p~~~v~GNHD~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~ 217 (408)
.+.+|+++++||||...... ......+...| ..|... . ...+..+|++++++
T Consensus 196 ~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf------~mP~~~------~-----g~~~~~yYSfd~g~--------- 249 (427)
T PLN02533 196 ASQRPWMVTHGNHELEKIPILHPEKFTAYNARW------RMPFEE------S-----GSTSNLYYSFNVYG--------- 249 (427)
T ss_pred hhcCceEEeCccccccccccccCcCccchhhcc------cCCccc------c-----CCCCCceEEEEECC---------
Confidence 56799999999999864211 00000011111 111100 0 01123478888764
Q ss_pred ceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCccccc
Q 015362 218 SILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQF 297 (408)
Q Consensus 218 ~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~ 297 (408)
++|++|||... .....+|++||+++|++..++ ...++||++|+|++....... +..
T Consensus 250 --vhfI~Lds~~~---------~~~~~~Q~~WLe~dL~~~~r~---------~~pwiIv~~H~P~y~s~~~~~----~~~ 305 (427)
T PLN02533 250 --VHIIMLGSYTD---------FEPGSEQYQWLENNLKKIDRK---------TTPWVVAVVHAPWYNSNEAHQ----GEK 305 (427)
T ss_pred --EEEEEEeCCcc---------ccCchHHHHHHHHHHHhhccc---------CCCEEEEEeCCCeeecccccC----Ccc
Confidence 68999999521 124689999999999886421 346689999999986432210 100
Q ss_pred ccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccC-------CCCeEEEEeCCcCCC-----CCC-C-CCC-----
Q 015362 298 QEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGN-------LNGIWFCYGGGIGYH-----GYG-K-AGW----- 358 (408)
Q Consensus 298 ~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~-------~~gi~~~~~~~sg~~-----~~~-~-~~~----- 358 (408)
+.. .....+...|.++ +|+++||||+|.+++... ..|...+..|+.|.. .+. + .+|
T Consensus 306 -~~~---~~r~~le~Ll~~~-~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~ 380 (427)
T PLN02533 306 -ESV---GMKESMETLLYKA-RVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDISLFRE 380 (427)
T ss_pred -hhH---HHHHHHHHHHHHh-CCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCceeEEe
Confidence 000 0112344455554 699999999999765331 235445545544431 111 0 112
Q ss_pred -CCceEEEEEecCCCCCCccccceeEEEEEccCCCCCcccceeeeccCC
Q 015362 359 -PRRARIILAEAGKGENGWMEVEMIKTWKRLDDQRLSKIDEQVLWEMCP 406 (408)
Q Consensus 359 -~~g~rv~~i~~~~~~~~~~~~~~~~tw~r~~~~~~~~~~~~~~~~~~~ 406 (408)
.-|+-.+++- +. ++-..+|+|.+++..++.|+.||-+...
T Consensus 381 ~~~G~~~l~v~-n~-------t~l~~~~~~~~~~~~~~~D~~~i~~~~~ 421 (427)
T PLN02533 381 ASFGHGQLNVV-DA-------NTMEWTWHRNDDDQSVASDSVWLKSLLT 421 (427)
T ss_pred ccCCEEEEEEE-cC-------CeEEEEEEecCCCCceeeeEEEEEeccC
Confidence 2355566554 11 3678889998888778999999977654
No 9
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.91 E-value=5.7e-23 Score=186.32 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=109.3
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
|+|+++||+|++..... ..+ ....+++.+.+++.+||+||++||+++.......+..+.+.++.+.+.
T Consensus 1 f~~~~~~D~q~~~~~~~-------~~~-----~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~ 68 (214)
T cd07399 1 FTLAVLPDTQYYTESYP-------EVF-----DAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKA 68 (214)
T ss_pred CEEEEecCCCcCCcCCH-------HHH-----HHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 68999999998755321 111 123456777777889999999999987665345677777777775457
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcceeE
Q 015362 142 GLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILN 221 (408)
Q Consensus 142 ~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~ 221 (408)
++|+++++||||.
T Consensus 69 ~~p~~~~~GNHD~------------------------------------------------------------------- 81 (214)
T cd07399 69 GIPYSVLAGNHDL------------------------------------------------------------------- 81 (214)
T ss_pred CCcEEEECCCCcc-------------------------------------------------------------------
Confidence 8999999999992
Q ss_pred EEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCccccccccc
Q 015362 222 LFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAV 301 (408)
Q Consensus 222 ~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~ 301 (408)
++.+|+. ++++|++||+++|++. +.+++||++|||+.... .+.......
T Consensus 82 ~~~ld~~-------------~~~~ql~WL~~~L~~~------------~~~~~iv~~H~p~~~~~-~~~~~~~~~----- 130 (214)
T cd07399 82 VLALEFG-------------PRDEVLQWANEVLKKH------------PDRPAILTTHAYLNCDD-SRPDSIDYD----- 130 (214)
T ss_pred hhhCCCC-------------CCHHHHHHHHHHHHHC------------CCCCEEEEecccccCCC-CcCcccccc-----
Confidence 1122331 4589999999998864 46789999999987432 221111000
Q ss_pred ccCCCChHHH-HHHHhcCCeEEEEeccCCCCC
Q 015362 302 ACSRVNSGVL-QTLVSLGDIKAVFVGHDHTND 332 (408)
Q Consensus 302 ~~~~~~~~~l-~~l~~~~~V~~v~~GH~H~n~ 332 (408)
.......+.+ +.+.++++|++|||||.|...
T Consensus 131 ~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~ 162 (214)
T cd07399 131 SDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAG 162 (214)
T ss_pred cccccHHHHHHHHHhCCCCEEEEEccccCCCc
Confidence 0001223444 556677789999999999854
No 10
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.91 E-value=5.7e-23 Score=191.35 Aligned_cols=208 Identities=15% Similarity=0.125 Sum_probs=123.9
Q ss_pred EEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCc--------ccHHHHHHHHH
Q 015362 64 ILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSST--------TDVAESMIQAF 135 (408)
Q Consensus 64 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~--------~~~~~~~~~~l 135 (408)
|+||||+|++...... .....+.+.+.+++.+||+||++||+++.... ...+..+.+.+
T Consensus 2 ~~~iSDlH~g~~~~~~-------------~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~ 68 (256)
T cd07401 2 FVHISDIHVSSFHPPN-------------RAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNIL 68 (256)
T ss_pred EEEecccccCCcCchh-------------hhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHH
Confidence 7999999999764211 00011456778888999999999999876532 11223444443
Q ss_pred hhhHh-cCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCC
Q 015362 136 GPAME-LGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHL 214 (408)
Q Consensus 136 ~~~~~-~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~ 214 (408)
..... ...|++.|+||||.++..+.....+++..+.. ...+ ...+|.....
T Consensus 69 ~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~---~~~~------------------~~~~~~~~~~------- 120 (256)
T cd07401 69 KESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYSA---TGRD------------------GSFSFSHTTR------- 120 (256)
T ss_pred HHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhhe---ecCC------------------CccceEEEec-------
Confidence 32211 15899999999999754332222222221110 0000 1112222110
Q ss_pred CCcceeEEEEEeCCCCCCc-CCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCc
Q 015362 215 ANSSILNLFFLDSGDRETV-RGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNI 293 (408)
Q Consensus 215 ~~~~~~~~i~LDS~~~~~~-~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~ 293 (408)
...+++++|||..+... ......|.+.++|++||++.|++.+ ..+++||++|||+.......
T Consensus 121 --~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~-----------~~~~~IV~~HhP~~~~~~~~---- 183 (256)
T cd07401 121 --FGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKST-----------NSNYTIWFGHYPTSTIISPS---- 183 (256)
T ss_pred --CCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhcc-----------cCCeEEEEEcccchhccCCC----
Confidence 12478999999754211 1112358899999999999988763 45689999999985421110
Q ss_pred ccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcc--cCCCCe
Q 015362 294 VGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFC--GNLNGI 340 (408)
Q Consensus 294 ~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~--~~~~gi 340 (408)
. ....++++.|.++ +|+++||||.|.++.. ..++|+
T Consensus 184 ~----------~~~~~~~~ll~~~-~v~~vl~GH~H~~~~~~p~h~~~~ 221 (256)
T cd07401 184 A----------KSSSKFKDLLKKY-NVTAYLCGHLHPLGGLEPVHYAGH 221 (256)
T ss_pred c----------chhHHHHHHHHhc-CCcEEEeCCccCCCcceeeeecCC
Confidence 0 1122477777776 5999999999996541 245665
No 11
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.90 E-value=7e-22 Score=186.71 Aligned_cols=239 Identities=18% Similarity=0.229 Sum_probs=144.9
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCccc-----HHHHHHHHHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTD-----VAESMIQAFG 136 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~-----~~~~~~~~l~ 136 (408)
++|++++|.-.+.... .....+.+.+.+++.+|||||++||+++..+... ....+.+.+.
T Consensus 1 ~~f~~~gD~g~~~~~~---------------~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~ 65 (277)
T cd07378 1 LRFLALGDWGGGGTAG---------------QKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYS 65 (277)
T ss_pred CeEEEEeecCCCCCHH---------------HHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHcc
Confidence 4799999998652111 1234456667777789999999999986654311 1133444444
Q ss_pred hhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCC
Q 015362 137 PAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLAN 216 (408)
Q Consensus 137 ~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~ 216 (408)
.+ ..++|+|+|+||||........ ..+.. .+ ..+. ...+..+|++...... .
T Consensus 66 ~~-~~~~P~~~v~GNHD~~~~~~~~--~~~~~-~~-----~~~~--------------~~~~~~~y~~~~~~~~-----~ 117 (277)
T cd07378 66 AP-SLQVPWYLVLGNHDYSGNVSAQ--IDYTK-RP-----NSPR--------------WTMPAYYYRVSFPFPS-----S 117 (277)
T ss_pred ch-hhcCCeEEecCCcccCCCchhe--eehhc-cC-----CCCC--------------ccCcchheEEEeecCC-----C
Confidence 32 3689999999999997543221 00000 00 0111 1122346676554210 1
Q ss_pred cceeEEEEEeCCCCCCcCC------cCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCcccccc
Q 015362 217 SSILNLFFLDSGDRETVRG------VRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYY 290 (408)
Q Consensus 217 ~~~~~~i~LDS~~~~~~~~------~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~ 290 (408)
...++|++|||+.+..... ....+.+..+|++||+++|++.+ .+++||++|||++.......
T Consensus 118 ~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~------------~~~~iv~~H~P~~~~~~~~~ 185 (277)
T cd07378 118 DTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAAST------------ADWKIVVGHHPIYSSGEHGP 185 (277)
T ss_pred CCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHhcC------------CCeEEEEeCccceeCCCCCC
Confidence 2358999999986532110 12346799999999999987753 47899999999975422110
Q ss_pred CCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCCC--CeEEEEeCCcCCCCCCC-------------
Q 015362 291 QNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLN--GIWFCYGGGIGYHGYGK------------- 355 (408)
Q Consensus 291 ~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~--gi~~~~~~~sg~~~~~~------------- 355 (408)
. +.....+.+.+.++ +|+++|+||.|.... ...+ |+.++.+++.|......
T Consensus 186 ~------------~~~~~~l~~l~~~~-~v~~vl~GH~H~~~~-~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ 251 (277)
T cd07378 186 T------------SCLVDRLLPLLKKY-KVDAYLSGHDHNLQH-IKDDGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGF 251 (277)
T ss_pred c------------HHHHHHHHHHHHHc-CCCEEEeCCccccee-eecCCCCcEEEEeCCCcccCCCCCccCccccccccc
Confidence 0 01123566666666 599999999998543 3444 88887777665421111
Q ss_pred CCCCCceEEEEEec
Q 015362 356 AGWPRRARIILAEA 369 (408)
Q Consensus 356 ~~~~~g~rv~~i~~ 369 (408)
.....|+.+++|+.
T Consensus 252 ~~~~~Gy~~i~v~~ 265 (277)
T cd07378 252 TSSGGGFAYLELTK 265 (277)
T ss_pred ccCCCCEEEEEEec
Confidence 12347888888873
No 12
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.89 E-value=6.2e-22 Score=188.85 Aligned_cols=226 Identities=21% Similarity=0.206 Sum_probs=134.5
Q ss_pred EEEEeccCcCCCCc------cccCccc------------cccc---cccCChHHHHHHHHHHHHc--CCCEEEEcCCcCC
Q 015362 64 ILQVADMHYGMGKV------TRCRDVT------------ATEF---KYCSDLNTTRFLKRIIEAE--KPDFIAFTGDNIF 120 (408)
Q Consensus 64 i~~iSDlH~~~~~~------~~~~~~~------------~~~~---~~~~~~~~~~~~~~~i~~~--~pD~vv~~GDli~ 120 (408)
|+||||+|+..... ..|+... ...| +|-....+++.+.+.+++. +|||||+|||++.
T Consensus 1 ~l~~sDiH~D~~Y~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~ 80 (296)
T cd00842 1 FLHISDIHYDPLYKVGSEYSANCHSPLCCRDESGDISPPAGPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVR 80 (296)
T ss_pred CEEeeccCCCCCCcCCCCCcCCCCCCCccCCCCCCCCCCCCCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCC
Confidence 68999999974331 2343321 1223 3335567778888888877 9999999999997
Q ss_pred CCCcccH--------HHHHHHHHhhhHhcCCCEEEEcCCCCCCCCC--C----HHHHHH-HHHHccCCccccCCCCCCCc
Q 015362 121 GSSTTDV--------AESMIQAFGPAMELGLPWAAVLGNHDQESTM--D----REELMY-FISLMDYSVAQVNPPAEDPS 185 (408)
Q Consensus 121 ~~~~~~~--------~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~--~----~~~~~~-~~~~~~~~~~~~~p~~~~~~ 185 (408)
....... ...+.+.++. ...++|++.++||||..... . .....+ +...+.. ..+...
T Consensus 81 h~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~----~l~~~~--- 152 (296)
T cd00842 81 HDVDEQTPETLVLISISNLTSLLKK-AFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKS----WLPEEA--- 152 (296)
T ss_pred CCchhhchhHHHHHHHHHHHHHHHH-hCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHh----hcCHHH---
Confidence 7653211 1122222222 12479999999999997531 1 111111 1111110 001000
Q ss_pred ccccCCccccccCccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCcCCcC--cCCCCcHHHHHHHHHHHHHHhhhhcc
Q 015362 186 NLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVR--TYGYIKESQLRWLHRVSEALQGQKQD 263 (408)
Q Consensus 186 ~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~~i~LDS~~~~~~~~~~--~~g~i~~~Ql~WL~~~L~~~~~~~~~ 263 (408)
.......++|+..+. ..+++|+|||..+....... ..+....+|++||+++|+++++
T Consensus 153 -------~~~~~~ggYY~~~~~----------~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~---- 211 (296)
T cd00842 153 -------EETFKKGGYYSVPVK----------PGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQ---- 211 (296)
T ss_pred -------HHHhhcceEEEEEcC----------CCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHH----
Confidence 001223456776542 25899999998654322111 1234668999999999999862
Q ss_pred cccccCCCCCeEEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCC-eEEEEeccCCCCCcccCC
Q 015362 264 SNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGD-IKAVFVGHDHTNDFCGNL 337 (408)
Q Consensus 264 ~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~-V~~v~~GH~H~n~~~~~~ 337 (408)
++..++|++|||+........ +....++.+.+.++++ |.++|+||+|..++...+
T Consensus 212 ------~~~~v~I~~HiPp~~~~~~~~-------------~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~ 267 (296)
T cd00842 212 ------AGEKVWIIGHIPPGVNSYDTL-------------ENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVFY 267 (296)
T ss_pred ------CCCeEEEEeccCCCCcccccc-------------hHHHHHHHHHHHHHHHhhheeeecccccceEEEEe
Confidence 457899999999975321110 0122367777777764 689999999997766544
No 13
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.85 E-value=2.7e-19 Score=174.56 Aligned_cols=132 Identities=20% Similarity=0.333 Sum_probs=92.4
Q ss_pred CccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEE
Q 015362 198 GFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAF 277 (408)
Q Consensus 198 g~~~y~~~v~~~~~~~~~~~~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~ 277 (408)
|..||++.+.+ .+++|+|||.... + ...|.++++|++||+++|++. +.+++|||
T Consensus 290 G~~YYSFd~~g----------gvrfIvLDSt~~~---G-~~~G~L~eeQL~WLeqeLa~a------------~~k~VVVf 343 (496)
T TIGR03767 290 GTGYYTFDIAG----------GVRGISMDTTNRA---G-GDEGSLGQTQFKWIKDTLRAS------------SDTLFVLF 343 (496)
T ss_pred CCceEEEEeEC----------CEEEEEEeCCCcC---C-CcCCccCHHHHHHHHHHHhcC------------CCCCEEEE
Confidence 56789988433 3789999997431 1 246889999999999998764 46789999
Q ss_pred ecCCCCCccccccCCcc-cccccccccCCCC-hHHHHHHHhcCCeEEEEeccCCCCCcccCC---------CCeEEEEeC
Q 015362 278 FHIPIPETPQLYYQNIV-GQFQEAVACSRVN-SGVLQTLVSLGDIKAVFVGHDHTNDFCGNL---------NGIWFCYGG 346 (408)
Q Consensus 278 ~HhPl~~~~~~~~~~~~-g~~~e~~~~~~~~-~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~---------~gi~~~~~~ 346 (408)
+|||+......+.+... +. ...+ .++++.|.++++|.++||||.|.+.. ..+ .|+|-+.++
T Consensus 344 ~HHPp~s~g~~~~Dp~~pg~-------~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i-~~~~~~~~~~p~~gfweI~Ta 415 (496)
T TIGR03767 344 SHHTSWSMVNELTDPVDPGE-------KRHLGTELVSLLLEHPNVLAWVNGHTHSNKI-TAHRRVEGVGKDKGFWEINTA 415 (496)
T ss_pred ECCCCccccccccccccccc-------cccCHHHHHHHHhcCCCceEEEECCcCCCcc-ccccCCCCCCCcCCeEEEecc
Confidence 99998765433332211 11 1223 47888898888999999999999753 322 245554442
Q ss_pred CcCCCCCCCCCCCCceEEEEEecC
Q 015362 347 GIGYHGYGKAGWPRRARIILAEAG 370 (408)
Q Consensus 347 ~sg~~~~~~~~~~~g~rv~~i~~~ 370 (408)
+ + .+++.-+|+|||..+
T Consensus 416 S-----l--vdfPq~~Ri~Ei~~n 432 (496)
T TIGR03767 416 S-----H--IDFPQQGRIIELADN 432 (496)
T ss_pred c-----c--ccCCCCceEEEEEeC
Confidence 1 2 367889999999854
No 14
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.83 E-value=4.9e-19 Score=162.64 Aligned_cols=215 Identities=16% Similarity=0.077 Sum_probs=120.8
Q ss_pred EEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc--CCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 64 ILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE--KPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 64 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
|.++||+|++...... ++..++ ...+..+.+.+.++.. +||+||++||+++... .+ ...+.+..+...
T Consensus 1 ~~~~sDlHl~~~~~~~-~~~~g~-----~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~-~~---~~~~~l~~l~~l 70 (232)
T cd07393 1 IFAIADLHLNLDPTKP-MDVFGP-----EWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMK-LE---EAKLDLAWIDAL 70 (232)
T ss_pred CeEEEeeccCCCCCCC-CcccCc-----cHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCC-hH---HHHHHHHHHHhC
Confidence 4689999998543110 011111 0124556677776665 9999999999874432 22 222333322334
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcceeE
Q 015362 142 GLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILN 221 (408)
Q Consensus 142 ~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~ 221 (408)
..|+|+|+||||++. .....+.+.+..... .. . .+..+.+. .+.
T Consensus 71 ~~~v~~V~GNHD~~~-~~~~~~~~~l~~~~~---~~--------------------~-~n~~~~~~-----------~i~ 114 (232)
T cd07393 71 PGTKVLLKGNHDYWW-GSASKLRKALEESRL---AL--------------------L-FNNAYIDD-----------DVA 114 (232)
T ss_pred CCCeEEEeCCccccC-CCHHHHHHHHHhcCe---EE--------------------e-ccCcEEEC-----------CEE
Confidence 568999999999853 223333322221000 00 0 01122111 244
Q ss_pred EEEEeCCCCCCcCC--------cCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCc
Q 015362 222 LFFLDSGDRETVRG--------VRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNI 293 (408)
Q Consensus 222 ~i~LDS~~~~~~~~--------~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~ 293 (408)
++.++...+...+. ....|.+..+|+.||++.|+++... ....++|+++|+|+.....
T Consensus 115 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~--------~~~~~~i~~~H~p~~~~~~------ 180 (232)
T cd07393 115 ICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKKR--------EKEKIKIVMLHYPPANENG------ 180 (232)
T ss_pred EEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhC--------CCCCCEEEEECCCCcCCCC------
Confidence 55554211110000 0123556788999999999887521 1225799999999864210
Q ss_pred ccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCc----ccCCCCeEEEEeCCcCCC
Q 015362 294 VGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDF----CGNLNGIWFCYGGGIGYH 351 (408)
Q Consensus 294 ~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~----~~~~~gi~~~~~~~sg~~ 351 (408)
....+...+.+. +|++++|||+|.... ....+|+.+..++++++.
T Consensus 181 ------------~~~~~~~~~~~~-~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~ 229 (232)
T cd07393 181 ------------DDSPISKLIEEY-GVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLN 229 (232)
T ss_pred ------------CHHHHHHHHHHc-CCCEEEECCCCCCcccccccceECCEEEEEEcchhcC
Confidence 112466666776 599999999998543 234689988888877653
No 15
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.4e-18 Score=167.49 Aligned_cols=264 Identities=18% Similarity=0.181 Sum_probs=165.7
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcc-cHHHHHHHHHhhh
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTT-DVAESMIQAFGPA 138 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~-~~~~~~~~~l~~~ 138 (408)
.+.+++++.|+-....... + +.......++|+|++.|||.+..... ..++.+.+.+++
T Consensus 146 ~~~~~~i~GDlG~~~~~~s-----------------~---~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp- 204 (452)
T KOG1378|consen 146 SPTRAAIFGDMGCTEPYTS-----------------T---LRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEP- 204 (452)
T ss_pred CceeEEEEccccccccccc-----------------h---HhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhh-
Confidence 5799999999976554311 1 11111233799999999999887766 478888888888
Q ss_pred HhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcc
Q 015362 139 MELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSS 218 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~ 218 (408)
+.+.+|++++.||||....... .| .++......|...+ .....-+|++++++
T Consensus 205 ~As~vPymv~~GNHE~d~~~~~----~F---~~y~~Rf~mP~~~s-----------~s~~~l~YSfd~G~---------- 256 (452)
T KOG1378|consen 205 IASYVPYMVCSGNHEIDWPPQP----CF---VPYSARFNMPGNSS-----------ESDSNLYYSFDVGG---------- 256 (452)
T ss_pred hhccCceEEecccccccCCCcc----cc---cccceeeccCCCcC-----------CCCCceeEEEeecc----------
Confidence 5889999999999999765322 01 11211112221100 01112378888775
Q ss_pred eeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCcccccc
Q 015362 219 ILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQ 298 (408)
Q Consensus 219 ~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~ 298 (408)
++|++|+|-.+. + -....+|.+||+++|+++.+. +..++||++|.|++...... .++
T Consensus 257 -vhfv~lsse~~~---~----~~~~~~QY~WL~~dL~~v~r~---------~tPWlIv~~HrP~Y~S~~~~------~~r 313 (452)
T KOG1378|consen 257 -VHFVVLSTETYY---N----FLKGTAQYQWLERDLASVDRK---------KTPWLIVQGHRPMYCSSNDA------HYR 313 (452)
T ss_pred -EEEEEEeccccc---c----ccccchHHHHHHHHHHHhccc---------CCCeEEEEecccceecCCch------hhc
Confidence 789999995432 1 125689999999999998631 27899999999998654311 122
Q ss_pred cccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCCC------------------CeEEEEeCCcCCCC----CCC-
Q 015362 299 EAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLN------------------GIWFCYGGGIGYHG----YGK- 355 (408)
Q Consensus 299 e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~------------------gi~~~~~~~sg~~~----~~~- 355 (408)
|+.. ......+-+.+.++ +|+++|.||.|.+++....- .+.+..+.+.+-.+ +.+
T Consensus 314 eG~~-~~~~~~LE~l~~~~-~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~ 391 (452)
T KOG1378|consen 314 EGEF-ESMREGLEPLFVKY-KVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQ 391 (452)
T ss_pred cCcc-hhhHHHHHHHHHHh-ceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCcccCCC
Confidence 3211 00112455556666 59999999999987654321 12333222211000 000
Q ss_pred ------CCCCCceEEEEEecCCCCCCccccceeEEEEEccCCCCCcccceeeeccC
Q 015362 356 ------AGWPRRARIILAEAGKGENGWMEVEMIKTWKRLDDQRLSKIDEQVLWEMC 405 (408)
Q Consensus 356 ------~~~~~g~rv~~i~~~~~~~~~~~~~~~~tw~r~~~~~~~~~~~~~~~~~~ 405 (408)
....-|+-++++.- . ++...+|+|..+++.+++|.-+|....
T Consensus 392 p~~Sa~R~~dfG~~~L~v~N-~-------TH~~~~~~~~~d~~g~~~D~fwl~k~~ 439 (452)
T KOG1378|consen 392 PEWSAFREGDFGYTRLTAKN-G-------THAHVHWVRNSDASGVVIDSFWLIKDY 439 (452)
T ss_pred CcccccccccCCeEEEEEec-C-------ceEEEEEEeccCCCceEeeeEEEEccc
Confidence 12345888888862 2 378999999988877899998886643
No 16
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=165.56 Aligned_cols=201 Identities=24% Similarity=0.323 Sum_probs=124.1
Q ss_pred eEEEEEeccCcCC-CCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGM-GKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
+||+||||+|++. ... ....++.+.+.++..+||+||+||||.+. +..+.++.+.+.+.. ..
T Consensus 1 ~~i~~isD~H~~~~~~~---------------~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~~-~~ 63 (301)
T COG1409 1 MRIAHISDLHLGALGVD---------------SEELLEALLAAIEQLKPDLLVVTGDLTND-GEPEEYRRLKELLAR-LE 63 (301)
T ss_pred CeEEEEecCcccccccc---------------hHHHHHHHHHHHhcCCCCEEEEccCcCCC-CCHHHHHHHHHHHhh-cc
Confidence 5899999999995 221 12345667777788899999999998765 445566777666652 35
Q ss_pred cCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCccee
Q 015362 141 LGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSIL 220 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~ 220 (408)
.+.|++++|||||............+ . ... .+...... ...+
T Consensus 64 ~~~~~~~vpGNHD~~~~~~~~~~~~~-----~-----~~~--------------------~~~~~~~~--------~~~~ 105 (301)
T COG1409 64 LPAPVIVVPGNHDARVVNGEAFSDQF-----F-----NRY--------------------AVLVGACS--------SGGW 105 (301)
T ss_pred CCCceEeeCCCCcCCchHHHHhhhhh-----c-----ccC--------------------cceEeecc--------CCce
Confidence 68899999999999765432211000 0 000 00100000 0246
Q ss_pred EEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCC-CCeEEEecCCCCCccccccCCccccccc
Q 015362 221 NLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQ-LPGLAFFHIPIPETPQLYYQNIVGQFQE 299 (408)
Q Consensus 221 ~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~-~~~iv~~HhPl~~~~~~~~~~~~g~~~e 299 (408)
+++.+||.... ...|.++.+|++||++.|++... .. ..++++.|||+.. ...+.....
T Consensus 106 ~~~~~d~~~~~-----~~~G~~~~~q~~~l~~~l~~~~~----------~~~~~~v~~~hh~~~~-~~~~~~~~~----- 164 (301)
T COG1409 106 RVIGLDSSVPG-----VPLGRLGAEQLDWLEEALAAAPE----------RAKDTVVVLHHHPLPS-PGTGVDRVA----- 164 (301)
T ss_pred EEEEecCCCCC-----CCCCEECHHHHHHHHHHHHhCcc----------ccCceEEEecCCCCCC-CCCccceee-----
Confidence 79999996432 25678999999999999887641 11 1344455555543 222111100
Q ss_pred ccccCCCC-hHHHHHHHhcCC-eEEEEeccCCCCC-cccCCCCeEEE
Q 015362 300 AVACSRVN-SGVLQTLVSLGD-IKAVFVGHDHTND-FCGNLNGIWFC 343 (408)
Q Consensus 300 ~~~~~~~~-~~~l~~l~~~~~-V~~v~~GH~H~n~-~~~~~~gi~~~ 343 (408)
..+ ..+...+...++ |+++++||.|... ......+..+.
T Consensus 165 -----l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~ 206 (301)
T COG1409 165 -----LRDAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLS 206 (301)
T ss_pred -----eecchhHHHHHHhcCCceEEEEeCcccccccccceeCCeeee
Confidence 122 356666777766 9999999999942 55566666555
No 17
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.81 E-value=4.7e-19 Score=163.65 Aligned_cols=232 Identities=16% Similarity=0.100 Sum_probs=114.6
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
||+++||+|+...... ....++.+.+.+++.+||+||++||+++.. ... ..+.+.+.++ .+
T Consensus 1 ki~~iSDlH~~~~~~~--------------~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~--~~~-~~~~~~l~~~--~~ 61 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFD--------------TEEMLETLAQYLKKQKIDHLHIAGDISNDF--QRS-LPFIEKLQEL--KG 61 (239)
T ss_pred CEEEEEeecCCCCCCC--------------HHHHHHHHHHHHHhcCCCEEEECCccccch--hhH-HHHHHHHHHh--cC
Confidence 6999999998632210 112345677777788999999999988643 122 2233333221 46
Q ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceE-EEeeCCCCCCCCCcceeE
Q 015362 143 LPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYD-LRVYGPPGSHLANSSILN 221 (408)
Q Consensus 143 ~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~-~~v~~~~~~~~~~~~~~~ 221 (408)
.|+++|+||||+.......++.+. . ............. .+. + .+.|.+.|+ ++. +............+
T Consensus 62 ~pv~~v~GNHD~~~~~~~~~~~~~---~--~~~~l~~~~~~~~---~~~-~-~~ig~~gw~d~~~-~~~~~~~~~~~~~~ 130 (239)
T TIGR03729 62 IKVTFNAGNHDMLKDLTYEEIESN---D--SPLYLHNRFIDIP---NTQ-W-RIIGNNGWYDYSF-SNDKTSKEILRWKK 130 (239)
T ss_pred CcEEEECCCCCCCCCCCHHHHHhc---c--chhhhcccccccC---CCc-e-EEEeeccceeccc-ccccCHHHHHHhhh
Confidence 899999999998644433322211 0 0000000000000 000 0 111211111 110 00000000000000
Q ss_pred EEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCcccc-ccCCcccccccc
Q 015362 222 LFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQL-YYQNIVGQFQEA 300 (408)
Q Consensus 222 ~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~-~~~~~~g~~~e~ 300 (408)
-+..++.. ......+.+.++|++||++.|+++ ..+++||++||||...... .... ..+..
T Consensus 131 d~~~~~~~----~~~~~~~~~~~~~l~~l~~~l~~~------------~~~~~ivvtH~pP~~~~~~~~~~~--~~~~~- 191 (239)
T TIGR03729 131 SFWFDRRI----KRPMSDPERTAIVLKQLKKQLNQL------------DNKQVIFVTHFVPHRDFIYVPMDH--RRFDM- 191 (239)
T ss_pred cEEeeccc----CCCCChHHHHHHHHHHHHHHHHhc------------CCCCEEEEEcccchHHHhcCCCCC--cchhh-
Confidence 01222211 000134568899999999998765 3578999999988531110 0000 00000
Q ss_pred cccCCCC-hHHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEe
Q 015362 301 VACSRVN-SGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYG 345 (408)
Q Consensus 301 ~~~~~~~-~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~ 345 (408)
..+..+ +.+.+.+.++ +|++++|||.|........+|+.++..
T Consensus 192 -~~~~~~s~~l~~li~~~-~v~~~i~GH~H~~~~~~~i~~~~~~~~ 235 (239)
T TIGR03729 192 -FNAFLGSQHFGQLLVKY-EIKDVIFGHLHRRFGPLTIGGTTYHNR 235 (239)
T ss_pred -hhhccChHHHHHHHHHh-CCCEEEECCccCCCCCEEECCEEEEec
Confidence 001234 4566666666 799999999999422334578877654
No 18
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.81 E-value=1.1e-18 Score=161.97 Aligned_cols=132 Identities=18% Similarity=0.159 Sum_probs=84.1
Q ss_pred HHHHHHHcCCCEEEEcCCcCCCCCccc------HHHHHHHHHhhhHhcCCCEEEEcCCCCCCCCC--CHHHHHHHHHHcc
Q 015362 100 LKRIIEAEKPDFIAFTGDNIFGSSTTD------VAESMIQAFGPAMELGLPWAAVLGNHDQESTM--DREELMYFISLMD 171 (408)
Q Consensus 100 ~~~~i~~~~pD~vv~~GDli~~~~~~~------~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~--~~~~~~~~~~~~~ 171 (408)
...++...+||+||++||+++.+.... ++..+.+.+.+ .....|+++||||||..... .......|.+
T Consensus 37 ~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~-~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~--- 112 (257)
T cd08163 37 WRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDP-SPGRKMVESLPGNHDIGFGNGVVLPVRQRFEK--- 112 (257)
T ss_pred HHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcC-CCccceEEEeCCCcccCCCCCCCHHHHHHHHH---
Confidence 334445679999999999987654311 12333444332 12247999999999985432 1122222222
Q ss_pred CCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHH
Q 015362 172 YSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLH 251 (408)
Q Consensus 172 ~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~ 251 (408)
.+|..+|.+.+.+ ++|++|||..... ...+.+..+|++||+
T Consensus 113 ------------------------~Fg~~~~~~~~~~-----------~~fV~Lds~~l~~----~~~~~~~~~~~~~l~ 153 (257)
T cd08163 113 ------------------------YFGPTSRVIDVGN-----------HTFVILDTISLSN----KDDPDVYQPPREFLH 153 (257)
T ss_pred ------------------------HhCCCceEEEECC-----------EEEEEEccccccC----CcccccchhHHHHHH
Confidence 2233456665543 6799999964321 124568889999999
Q ss_pred HHHHHHhhhhcccccccCCCCCeEEEecCCCCCc
Q 015362 252 RVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPET 285 (408)
Q Consensus 252 ~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~ 285 (408)
+.++... ...++||++|||++..
T Consensus 154 ~~l~~~~-----------~~~p~ILl~H~Plyr~ 176 (257)
T cd08163 154 SFSAMKV-----------KSKPRILLTHVPLYRP 176 (257)
T ss_pred hhhhccC-----------CCCcEEEEeccccccC
Confidence 9876542 5789999999999753
No 19
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.81 E-value=8.9e-18 Score=161.76 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=140.3
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCc-----ccHHHHHHHH
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSST-----TDVAESMIQA 134 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~-----~~~~~~~~~~ 134 (408)
+.++|+.+.|.--+... .....+.|.++.++.++||||.+||.+ ..+. +.....|.+.
T Consensus 25 ~~l~F~~vGDwG~g~~~----------------Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~v 87 (394)
T PTZ00422 25 AQLRFASLGNWGTGSKQ----------------QKLVASYLKQYAKNERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENV 87 (394)
T ss_pred CeEEEEEEecCCCCchh----------------HHHHHHHHHHHHHhCCCCEEEECCccc-cCCCCCccchhHHhhHhhh
Confidence 46899999998643211 223345666777788999999999987 3332 1122334555
Q ss_pred HhhhHh--cCCCEEEEcCCCCCCCCCCHHHHHHHHHH---------ccCCcc-ccCCCCCCCcccccCCccccccCccce
Q 015362 135 FGPAME--LGLPWAAVLGNHDQESTMDREELMYFISL---------MDYSVA-QVNPPAEDPSNLAKGGVMEKIDGFGNY 202 (408)
Q Consensus 135 l~~~~~--~~~p~~~v~GNHD~~~~~~~~~~~~~~~~---------~~~~~~-~~~p~~~~~~~~~~~~~~~~~~g~~~y 202 (408)
... .. ..+|||.|+||||+.++...+ +....+. ..++.. ...| . +.+-.-+|
T Consensus 88 Y~~-~s~~L~~Pwy~vLGNHDy~Gn~~AQ-i~r~~~~y~~~~~~~~~~y~~~~~~~~--------R------W~mP~~yY 151 (394)
T PTZ00422 88 YSE-ESGDMQIPFFTVLGQADWDGNYNAE-LLKGQNVYLNGHGQTDIEYDSNNDIYP--------K------WIMPNYWY 151 (394)
T ss_pred ccC-cchhhCCCeEEeCCcccccCCchhh-hccccccccccccccccccccccccCC--------C------ccCCchhh
Confidence 543 23 578999999999997664332 2111000 000000 0001 0 11111233
Q ss_pred EE--EeeCCC----CCCCCCcceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEE
Q 015362 203 DL--RVYGPP----GSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLA 276 (408)
Q Consensus 203 ~~--~v~~~~----~~~~~~~~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv 276 (408)
.+ ...... .........+.|+++||......- .+....++|++||+++|+... +...++||
T Consensus 152 ~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~---~~~~~~~~~w~~L~~~L~~a~----------k~a~WkIV 218 (394)
T PTZ00422 152 HYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSF---PYKKVSERAWQDLKATLEYAP----------KIADYIIV 218 (394)
T ss_pred eeeeeeecccccccccccCCCCEEEEEEEECchhcccC---CccccCHHHHHHHHHHHHhhc----------cCCCeEEE
Confidence 22 110000 000011234789999997543211 122357889999999986542 24579999
Q ss_pred EecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCCCCCC-
Q 015362 277 FFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGK- 355 (408)
Q Consensus 277 ~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~~~~~- 355 (408)
+.|||+++........ .....++..|.++ +|+++++||+|..++. ..+|+.++.+|+.|....+.
T Consensus 219 vGHhPIySsG~hg~~~------------~L~~~L~PLL~ky-~VdlYisGHDH~lq~i-~~~gt~yIvSGaGs~~~~~~~ 284 (394)
T PTZ00422 219 VGDKPIYSSGSSKGDS------------YLSYYLLPLLKDA-QVDLYISGYDRNMEVL-TDEGTAHINCGSGGNSGRKSI 284 (394)
T ss_pred EecCceeecCCCCCCH------------HHHHHHHHHHHHc-CcCEEEEccccceEEe-cCCCceEEEeCccccccCCCC
Confidence 9999999754321110 0112455555555 6999999999987664 45788887777655322211
Q ss_pred --------CCCCCceEEEEEec
Q 015362 356 --------AGWPRRARIILAEA 369 (408)
Q Consensus 356 --------~~~~~g~rv~~i~~ 369 (408)
.....|+-.++++.
T Consensus 285 ~~~~~s~F~~~~~GF~~~~l~~ 306 (394)
T PTZ00422 285 MKNSKSLFYSEDIGFCIHELNA 306 (394)
T ss_pred CCCCCcceecCCCCEEEEEEec
Confidence 01235777777763
No 20
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.80 E-value=1.8e-17 Score=155.73 Aligned_cols=108 Identities=21% Similarity=0.216 Sum_probs=73.8
Q ss_pred HHHHHHHHhhhhc-eeeccccccccCCCCCCccccCCCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHH
Q 015362 24 AIIFFVDKQILQK-LQISHDKIHLKKYPDLPLRFRYDGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKR 102 (408)
Q Consensus 24 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (408)
+.++.|+..++++ ++++++++.. +|..+ +++||+++||+|++.... ...++++.+
T Consensus 19 ~~~~~~~~~~e~~~~~v~~~~i~~-----~~~~~---~~~rI~~lSDlH~~~~~~----------------~~~l~~~v~ 74 (271)
T PRK11340 19 SSGFGYMHYWEPGWFELIRHRLAF-----FKDNA---APFKILFLADLHYSRFVP----------------LSLISDAIA 74 (271)
T ss_pred HhHhhHHhhhcCceEEEEEEEccC-----CCCCC---CCcEEEEEcccCCCCcCC----------------HHHHHHHHH
Confidence 4456666667766 5688888862 12222 369999999999875421 123466778
Q ss_pred HHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCCC
Q 015362 103 IIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 103 ~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~ 157 (408)
.+++++||+|+++||+++.... ...+.+.+.++.+ ....|+|+|+||||+...
T Consensus 75 ~i~~~~pDlVli~GD~~d~~~~-~~~~~~~~~L~~L-~~~~pv~~V~GNHD~~~~ 127 (271)
T PRK11340 75 LGIEQKPDLILLGGDYVLFDMP-LNFSAFSDVLSPL-AECAPTFACFGNHDRPVG 127 (271)
T ss_pred HHHhcCCCEEEEccCcCCCCcc-ccHHHHHHHHHHH-hhcCCEEEecCCCCcccC
Confidence 8888999999999998863322 2234455566654 446899999999998643
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.77 E-value=2.2e-17 Score=146.49 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=105.4
Q ss_pred EEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCC
Q 015362 64 ILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGL 143 (408)
Q Consensus 64 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~ 143 (408)
|+++||+|..... ++. ..+++.+||+||++||+++... .+.+..+ +. +...+.
T Consensus 1 i~~~sD~H~~~~~--------------------~~~--~~~~~~~~D~vv~~GDl~~~~~-~~~~~~~-~~---l~~~~~ 53 (188)
T cd07392 1 ILAISDIHGDVEK--------------------LEA--IILKAEEADAVIVAGDITNFGG-KEAAVEI-NL---LLAIGV 53 (188)
T ss_pred CEEEEecCCCHHH--------------------HHH--HHhhccCCCEEEECCCccCcCC-HHHHHHH-HH---HHhcCC
Confidence 6899999975321 122 4456789999999999876543 2233333 33 345589
Q ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcceeEEE
Q 015362 144 PWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLF 223 (408)
Q Consensus 144 p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~~i 223 (408)
|+++|+||||... ..+... +.. . ...+ ..+.+. .+.++
T Consensus 54 p~~~v~GNHD~~~------~~~~~~--~~~---~-----------------~~~~---~~~~~~-----------~~~~~ 91 (188)
T cd07392 54 PVLAVPGNCDTPE------ILGLLT--SAG---L-----------------NLHG---KVVEVG-----------GYTFV 91 (188)
T ss_pred CEEEEcCCCCCHH------HHHhhh--cCc---E-----------------ecCC---CEEEEC-----------CEEEE
Confidence 9999999999732 111100 000 0 0111 122221 25688
Q ss_pred EEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCccccccccccc
Q 015362 224 FLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVAC 303 (408)
Q Consensus 224 ~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~ 303 (408)
.+++...... ...+.++++|++|+ +.+.. ...++.|+++|+||... +.+.....
T Consensus 92 g~~~~~~~~~---~~~~~~~~~~l~~~-~~l~~------------~~~~~~ilv~H~pp~~~---~~d~~~~~------- 145 (188)
T cd07392 92 GIGGSNPTPF---NTPIELSEEEIVSD-GRLNN------------LLAKNLILVTHAPPYGT---AVDRVSGG------- 145 (188)
T ss_pred EeCCCCCCCC---CCccccCHHHHHHh-hhhhc------------cCCCCeEEEECCCCcCC---cccccCCC-------
Confidence 8887432111 12456889999998 33322 24678999999999652 11111100
Q ss_pred CCCC-hHHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEE
Q 015362 304 SRVN-SGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCY 344 (408)
Q Consensus 304 ~~~~-~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~ 344 (408)
...+ ..+.+.+.+. +++++||||.|........++.++++
T Consensus 146 ~~~g~~~l~~li~~~-~~~~~l~GH~H~~~~~~~~~~~~~~n 186 (188)
T cd07392 146 FHVGSKAIRKFIEER-QPLLCICGHIHESRGVDKIGNTLVVN 186 (188)
T ss_pred CccCCHHHHHHHHHh-CCcEEEEeccccccceeeeCCeEEec
Confidence 0123 3455555555 58999999999942233455655544
No 22
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-17 Score=148.73 Aligned_cols=225 Identities=23% Similarity=0.249 Sum_probs=124.5
Q ss_pred CCCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCccc-----HHHHHH
Q 015362 58 YDGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTD-----VAESMI 132 (408)
Q Consensus 58 ~~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~-----~~~~~~ 132 (408)
+|++++|+++.|.-...... .......+.++-+..+.|||+-+||.++..+..+ ..+.|.
T Consensus 40 ~dgslsflvvGDwGr~g~~n---------------qs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~ 104 (336)
T KOG2679|consen 40 SDGSLSFLVVGDWGRRGSFN---------------QSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFE 104 (336)
T ss_pred CCCceEEEEEcccccCCchh---------------HHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhh
Confidence 56899999999986222110 1111223444445689999999999998776422 233344
Q ss_pred HHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCC
Q 015362 133 QAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGS 212 (408)
Q Consensus 133 ~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~ 212 (408)
++... .....|||.|+||||+.++...+ +...++... ..++.|..+ -.....++....+
T Consensus 105 nIYT~-pSLQkpWy~vlGNHDyrGnV~AQ-ls~~l~~~d--~RW~c~rsf---------------~~~ae~ve~f~v~-- 163 (336)
T KOG2679|consen 105 NIYTA-PSLQKPWYSVLGNHDYRGNVEAQ-LSPVLRKID--KRWICPRSF---------------YVDAEIVEMFFVD-- 163 (336)
T ss_pred hcccC-cccccchhhhccCccccCchhhh-hhHHHHhhc--cceecccHH---------------hhcceeeeeeccc--
Confidence 43332 24567999999999999876543 232222221 112222110 0000001111000
Q ss_pred CCCCcceeEEEEEeCC-----CCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccc
Q 015362 213 HLANSSILNLFFLDSG-----DRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQ 287 (408)
Q Consensus 213 ~~~~~~~~~~i~LDS~-----~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~ 287 (408)
...+++|+- ......+....-.+-..++.||+..|++. ..+++||..|||+.+...
T Consensus 164 -------~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S------------~a~wkiVvGHh~i~S~~~ 224 (336)
T KOG2679|consen 164 -------TTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKAS------------RAKWKIVVGHHPIKSAGH 224 (336)
T ss_pred -------cccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHHh------------hcceEEEecccceehhhc
Confidence 111222221 00000011111224578899999998876 468999999999986543
Q ss_pred cccCCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccC-CCCeEEEEeCCcCC
Q 015362 288 LYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGN-LNGIWFCYGGGIGY 350 (408)
Q Consensus 288 ~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~-~~gi~~~~~~~sg~ 350 (408)
.+ ...| ...+++..|.+. +|+++++||+|..+.... .+||+++..|+...
T Consensus 225 HG------~T~e------L~~~LlPiL~~n-~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSk 275 (336)
T KOG2679|consen 225 HG------PTKE------LEKQLLPILEAN-GVDLYINGHDHCLQHISSPESGIQFVTSGAGSK 275 (336)
T ss_pred cC------ChHH------HHHHHHHHHHhc-CCcEEEecchhhhhhccCCCCCeeEEeeCCccc
Confidence 32 2111 123455556555 699999999998765544 57898887765543
No 23
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.74 E-value=2.1e-16 Score=152.76 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=79.7
Q ss_pred eEEEEEeCCCCCCcCC--cCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCc-cccccCCccc-
Q 015362 220 LNLFFLDSGDRETVRG--VRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPET-PQLYYQNIVG- 295 (408)
Q Consensus 220 ~~~i~LDS~~~~~~~~--~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~-~~~~~~~~~g- 295 (408)
+++|+|||..+....+ ....|.++++|++||+++|++.. ...+.+|++|||+... ....+.....
T Consensus 305 lrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-----------a~~p~VVV~hHpPi~t~gi~~md~w~~~ 373 (492)
T TIGR03768 305 LKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-----------ADGQLMIIAAHIPIAVSPIGSEMEWWLG 373 (492)
T ss_pred eEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-----------CCCceEEEEeCCCcccCCccchhhhccc
Confidence 4899999976432211 12568899999999999998763 3456566655544432 2211111110
Q ss_pred cc--ccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCC---------CCeEEEEeCCcCCCCCCCCCCCCceEE
Q 015362 296 QF--QEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNL---------NGIWFCYGGGIGYHGYGKAGWPRRARI 364 (408)
Q Consensus 296 ~~--~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~---------~gi~~~~~~~sg~~~~~~~~~~~g~rv 364 (408)
.. .+.........++++.|.++++|.++||||.|.+. ...+ .|.|.+.+. ...+++.-+|+
T Consensus 374 ~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~-v~a~~~p~~~~pe~gFWeveTa-------Sl~DfPQq~R~ 445 (492)
T TIGR03768 374 AADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNT-VKAFPSPDPARPEYGFWQVETA-------SLRDFPQQFRT 445 (492)
T ss_pred cccccccccccccHHHHHHHHhcCCCeEEEEcCCccccc-ccccCCCCCCCCcCceEEEeeh-------hhccchhhceE
Confidence 00 01111011224788899999999999999999853 2221 234443332 12478899999
Q ss_pred EEEecCC
Q 015362 365 ILAEAGK 371 (408)
Q Consensus 365 ~~i~~~~ 371 (408)
|||.-+.
T Consensus 446 ~Ei~~n~ 452 (492)
T TIGR03768 446 FEIYLNS 452 (492)
T ss_pred EEEEeCC
Confidence 9998543
No 24
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.72 E-value=1.5e-17 Score=144.03 Aligned_cols=79 Identities=32% Similarity=0.450 Sum_probs=53.1
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
|||+++||+|++..... . ....+.......+||+||++||+++.....................
T Consensus 1 ~ri~~isD~H~~~~~~~---------------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 64 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS---------------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNP 64 (200)
T ss_dssp EEEEEEEBBTTTHHHHC---------------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCCcchh---------------H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhc
Confidence 79999999999865320 1 1245566667789999999999987765322222111012233567
Q ss_pred CCCEEEEcCCCCCCC
Q 015362 142 GLPWAAVLGNHDQES 156 (408)
Q Consensus 142 ~~p~~~v~GNHD~~~ 156 (408)
..|+++++||||+..
T Consensus 65 ~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 65 KIPVYFILGNHDYYS 79 (200)
T ss_dssp TTTEEEEE-TTSSHH
T ss_pred cccccccccccccce
Confidence 899999999999964
No 25
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.70 E-value=1.8e-16 Score=144.68 Aligned_cols=90 Identities=27% Similarity=0.368 Sum_probs=60.9
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCc-ccHHHHHHHHHhhhHhc
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSST-TDVAESMIQAFGPAMEL 141 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~-~~~~~~~~~~l~~~~~~ 141 (408)
||+|+||+|++......... ........+++.+.+.+++.+||+||++||+++.... ......+.+.+..+...
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRD-----RRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEA 75 (223)
T ss_pred CeEEeccccCCccccCcCcc-----cchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHC
Confidence 69999999999754321000 0001123456677777788899999999999876542 22345556666654446
Q ss_pred CCCEEEEcCCCCCCCC
Q 015362 142 GLPWAAVLGNHDQEST 157 (408)
Q Consensus 142 ~~p~~~v~GNHD~~~~ 157 (408)
++|+++++||||....
T Consensus 76 ~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 76 GIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCEEEecCCCCCccc
Confidence 8999999999998754
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.69 E-value=6.8e-17 Score=140.81 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=44.3
Q ss_pred EEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCC
Q 015362 64 ILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGL 143 (408)
Q Consensus 64 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~ 143 (408)
|+++||+|++..... ..+.+.+.+.+||+|+++||+++.... ..... +........
T Consensus 1 ~~~iSDlH~~~~~~~-------------------~~~~~~~~~~~~d~li~~GDi~~~~~~-~~~~~----~~~~~~~~~ 56 (166)
T cd07404 1 IQYLSDLHLEFEDNL-------------------ADLLNFPIAPDADILVLAGDIGYLTDA-PRFAP----LLLALKGFE 56 (166)
T ss_pred CceEccccccCcccc-------------------ccccccCCCCCCCEEEECCCCCCCcch-HHHHH----HHHhhcCCc
Confidence 579999998764321 112133456789999999998765432 11111 122245578
Q ss_pred CEEEEcCCCCCC
Q 015362 144 PWAAVLGNHDQE 155 (408)
Q Consensus 144 p~~~v~GNHD~~ 155 (408)
|+++|+||||+.
T Consensus 57 ~v~~v~GNHD~~ 68 (166)
T cd07404 57 PVIYVPGNHEFY 68 (166)
T ss_pred cEEEeCCCcceE
Confidence 999999999985
No 27
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.65 E-value=2.2e-15 Score=127.98 Aligned_cols=79 Identities=27% Similarity=0.293 Sum_probs=53.3
Q ss_pred EEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCC
Q 015362 64 ILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGL 143 (408)
Q Consensus 64 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~ 143 (408)
|+|+||+|++........ .....++.+.+.+++.+||+|+++||+++... .+.+..+.+.++.+.....
T Consensus 1 il~isD~Hl~~~~~~~~~----------~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~~~~l~~~~~ 69 (144)
T cd07400 1 ILHLSDLHFGPERKPELL----------ALLSLLDRLLAEIKALDPDLVVITGDLTQRGL-PEEFEEAREFLDALPAPLE 69 (144)
T ss_pred CeEeCccCCCCCcchhHH----------HHHHHHHHHHHHHhccCCCEEEECCCCCCCCC-HHHHHHHHHHHHHccccCC
Confidence 689999999976532100 00111345677777889999999999886654 3445556666665432236
Q ss_pred CEEEEcCCCC
Q 015362 144 PWAAVLGNHD 153 (408)
Q Consensus 144 p~~~v~GNHD 153 (408)
|+++|+||||
T Consensus 70 ~~~~v~GNHD 79 (144)
T cd07400 70 PVLVVPGNHD 79 (144)
T ss_pred cEEEeCCCCe
Confidence 9999999998
No 28
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.62 E-value=3.5e-14 Score=128.53 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=50.2
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
..||+.+||+|-. ...++.+.+.+++.++|+||++||+++.....+.+..+.+ .+..
T Consensus 4 ~~kIl~iSDiHgn--------------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~---~l~~ 60 (224)
T cd07388 4 VRYVLATSNPKGD--------------------LEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFR---ILGE 60 (224)
T ss_pred eeEEEEEEecCCC--------------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHH---HHHh
Confidence 4799999999932 1345667676677899999999998765422333333333 3334
Q ss_pred cCCCEEEEcCCCCC
Q 015362 141 LGLPWAAVLGNHDQ 154 (408)
Q Consensus 141 ~~~p~~~v~GNHD~ 154 (408)
.+.|+++|+||||.
T Consensus 61 l~~pv~~V~GNhD~ 74 (224)
T cd07388 61 AHLPTFYVPGPQDA 74 (224)
T ss_pred cCCceEEEcCCCCh
Confidence 47899999999996
No 29
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.60 E-value=1.6e-14 Score=131.97 Aligned_cols=79 Identities=32% Similarity=0.368 Sum_probs=58.0
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
++||+++||+|++.... ...++.+.+.+++.+||+|+++||+++...... ..+.+.++. +.
T Consensus 1 ~~~i~~~sDlH~~~~~~----------------~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~--~~~~~~l~~-l~ 61 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS----------------RERLERLVEKINALKPDLVVLTGDLVDGSVDVL--ELLLELLKK-LK 61 (223)
T ss_pred CCEEEEEeecCCCccCC----------------HHHHHHHHHHHhccCCCEEEEcCcccCCcchhh--HHHHHHHhc-cC
Confidence 48999999999986532 123567777888889999999999887654321 344455544 34
Q ss_pred cCCCEEEEcCCCCCCCCC
Q 015362 141 LGLPWAAVLGNHDQESTM 158 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~~~~ 158 (408)
...|+++++||||+....
T Consensus 62 ~~~~v~~v~GNHD~~~~~ 79 (223)
T cd07385 62 APLGVYAVLGNHDYYSGD 79 (223)
T ss_pred CCCCEEEECCCcccccCc
Confidence 578999999999997653
No 30
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.60 E-value=5.5e-14 Score=139.17 Aligned_cols=294 Identities=18% Similarity=0.173 Sum_probs=158.4
Q ss_pred cccCCCCeEEEEEeccCcCCCCc----c------ccCcc---------ccccccc---c-CChHHHHHHHHHHHH-c-CC
Q 015362 55 RFRYDGTFKILQVADMHYGMGKV----T------RCRDV---------TATEFKY---C-SDLNTTRFLKRIIEA-E-KP 109 (408)
Q Consensus 55 ~~~~~~~~ri~~iSDlH~~~~~~----~------~~~~~---------~~~~~~~---~-~~~~~~~~~~~~i~~-~-~p 109 (408)
...++..+||+||||+|...... . .||.- ...-|+. | ....+++.+.+.|++ . ++
T Consensus 132 p~~~~p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~i 211 (577)
T KOG3770|consen 132 PLKNNPTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDI 211 (577)
T ss_pred CCCCCCceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 33334569999999999975431 1 12211 1122433 3 445566666666665 3 48
Q ss_pred CEEEEcCCcCCCCCccc----H---HHHHHHHHhhhHhcCCCEEEEcCCCCCCCC-------CCHHH----H-HHHHHHc
Q 015362 110 DFIAFTGDNIFGSSTTD----V---AESMIQAFGPAMELGLPWAAVLGNHDQEST-------MDREE----L-MYFISLM 170 (408)
Q Consensus 110 D~vv~~GDli~~~~~~~----~---~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~-------~~~~~----~-~~~~~~~ 170 (408)
|+|+.|||.+....... . ...+.+.+... -.++|+|...||||.... ..... + ..+...+
T Consensus 212 D~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~-FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~W 290 (577)
T KOG3770|consen 212 DYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEY-FPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGAW 290 (577)
T ss_pred CEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHh-CCCCceeeecccCCCCcHhhcCCCCCcchhhhhHHHHHHHhhh
Confidence 99999999887653211 1 12222222221 248999999999998642 11110 0 0111111
Q ss_pred cCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCcCCc-CcCCCCcHHHHHH
Q 015362 171 DYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGV-RTYGYIKESQLRW 249 (408)
Q Consensus 171 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~~i~LDS~~~~~~~~~-~~~g~i~~~Ql~W 249 (408)
. ..-|.. ..+.+...++|...+. .++++|.||+......... -....-..+|++|
T Consensus 291 ~----~wlp~e----------~~~t~~kga~Y~~~~~----------~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqW 346 (577)
T KOG3770|consen 291 S----TWLPAE----------AKETFLKGAYYLVLVI----------DGLRLISLNTNYCSAPNFWLYANQTDPIDQLQW 346 (577)
T ss_pred h----ccCCHH----------HHhhhhcCcEEEEeec----------CCceEEEeccccccccceeeeecCCCchHHhhH
Confidence 1 111110 0002222345665544 2578999999753322211 1123346778999
Q ss_pred HHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcC-CeEEEEeccC
Q 015362 250 LHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLG-DIKAVFVGHD 328 (408)
Q Consensus 250 L~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~-~V~~v~~GH~ 328 (408)
|..+|++++ .++..+-++.|+|+..... .++ -...+...+.++. .|...|.||.
T Consensus 347 f~~~L~~ae----------~~GekVhil~HIPpG~~~c----------~~~-----ws~~f~~iv~r~~~tI~gqf~GH~ 401 (577)
T KOG3770|consen 347 FVDQLQEAE----------SAGEKVHILGHIPPGDGVC----------LEG-----WSINFYRIVNRFRSTIAGQFYGHT 401 (577)
T ss_pred HHHHHHHHH----------hcCCEEEEEEeeCCCCcch----------hhh-----hhHHHHHHHHHHHHhhhhhccccC
Confidence 999999987 3588899999999974211 010 1123444444443 4688999999
Q ss_pred CCCCcccCCCC---eEEEEeC-CcCCCCCCCCCCCCceEEEEEecCCCCCCccccceeEEEEEccCCCCCcccceeeecc
Q 015362 329 HTNDFCGNLNG---IWFCYGG-GIGYHGYGKAGWPRRARIILAEAGKGENGWMEVEMIKTWKRLDDQRLSKIDEQVLWEM 404 (408)
Q Consensus 329 H~n~~~~~~~g---i~~~~~~-~sg~~~~~~~~~~~g~rv~~i~~~~~~~~~~~~~~~~tw~r~~~~~~~~~~~~~~~~~ 404 (408)
|.+++...++- ..+..+. +++...|- ..-+++|++.++.. +.++ +-++.||+++-.....-- +++-|+.
T Consensus 402 h~d~f~v~yde~~~~p~~v~~i~~svtty~--~~~p~yr~y~~~~~---~~~~-~~d~~ty~~Nlt~an~~~-e~p~W~~ 474 (577)
T KOG3770|consen 402 HIDEFRVFYDEETGHPIAVAYIGPSVTTYY--NKNPGYRIYAVDST---ISFS-VPDHRTYFYNLTSANLQP-ESPEWEL 474 (577)
T ss_pred cceeEEEEeccccCCceeeeeccccceehh--ccCCCceecccCcc---ccee-cccceEEEEehhhhcCCC-CCCchHh
Confidence 99887654432 1211111 11111121 23579999999821 1122 467889988644321111 5555554
Q ss_pred C
Q 015362 405 C 405 (408)
Q Consensus 405 ~ 405 (408)
+
T Consensus 475 ~ 475 (577)
T KOG3770|consen 475 L 475 (577)
T ss_pred h
Confidence 3
No 31
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.57 E-value=3.4e-14 Score=133.18 Aligned_cols=112 Identities=25% Similarity=0.295 Sum_probs=73.1
Q ss_pred HHHHHHHHhhhhc-eeeccccccccCCCCCCccccCCCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHH
Q 015362 24 AIIFFVDKQILQK-LQISHDKIHLKKYPDLPLRFRYDGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKR 102 (408)
Q Consensus 24 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (408)
.+.+.++..+++. +.+..+++.. ++.+..+ .++||+|+||+|+..... ...+.+ .
T Consensus 12 ~~~~~~~~~~~~~~l~~~~~~i~~---~~~~~~~---~~~~iv~lSDlH~~~~~~-----------------~~~~~~-~ 67 (284)
T COG1408 12 IALASYAHLLEPGWLRVVKLTILT---PKLPASL---QGLKIVQLSDLHSLPFRE-----------------EKLALL-I 67 (284)
T ss_pred HHHHHHHHhcccceEEEEEEEeec---CCCCccc---CCeEEEEeehhhhchhhH-----------------HHHHHH-H
Confidence 3444444555555 3455555543 2234344 379999999999986541 122333 4
Q ss_pred HHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHH
Q 015362 103 IIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDRE 161 (408)
Q Consensus 103 ~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~ 161 (408)
.+..+.||+|++|||+++... ......+.+.+++ +.++.|+|+|.||||+.....+.
T Consensus 68 ~i~~~~~DlivltGD~~~~~~-~~~~~~~~~~L~~-L~~~~gv~av~GNHd~~~~~~~~ 124 (284)
T COG1408 68 AIANELPDLIVLTGDYVDGDR-PPGVAALALFLAK-LKAPLGVFAVLGNHDYGVDRSNV 124 (284)
T ss_pred HHHhcCCCEEEEEeeeecCCC-CCCHHHHHHHHHh-hhccCCEEEEecccccccccccc
Confidence 445567799999999998522 2345666667776 57789999999999998765443
No 32
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.49 E-value=4.4e-12 Score=124.41 Aligned_cols=90 Identities=23% Similarity=0.363 Sum_probs=59.0
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcc-cHHHHHHHHHhh-
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTT-DVAESMIQAFGP- 137 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~-~~~~~~~~~l~~- 137 (408)
+.+||+|+||+|+|.......+. .....+++.+.+.+.+++||+||++||+++..... .....+.+.++.
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~--------~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~ 73 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRG--------DDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLY 73 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhh--------hhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999643221111 01134567777777889999999999988765432 122222333322
Q ss_pred --------------------------------hHhcCCCEEEEcCCCCCCCC
Q 015362 138 --------------------------------AMELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 138 --------------------------------~~~~~~p~~~v~GNHD~~~~ 157 (408)
.+..++|+|+|.||||....
T Consensus 74 ~~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 74 CLGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSG 125 (405)
T ss_pred hccCCccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccc
Confidence 00147999999999999654
No 33
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.48 E-value=7.9e-12 Score=113.46 Aligned_cols=66 Identities=30% Similarity=0.373 Sum_probs=45.4
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
+||+++||+|..... ...+.+++.+||+|+++||+++.. ..+.+.+ .+.
T Consensus 1 ~rIa~isDiHg~~~~----------------------~~~~~l~~~~pD~Vl~~GDi~~~~------~~~~~~l---~~l 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL----------------------EDIKALHLLQPDLVLFVGDFGNES------VQLVRAI---SSL 49 (238)
T ss_pred CEEEEEecCCCCchH----------------------HHHHHHhccCCCEEEECCCCCcCh------HHHHHHH---HhC
Confidence 589999999954221 123466778999999999986421 2222222 234
Q ss_pred CCCEEEEcCCCCCCCCC
Q 015362 142 GLPWAAVLGNHDQESTM 158 (408)
Q Consensus 142 ~~p~~~v~GNHD~~~~~ 158 (408)
+.|+++|+||||++...
T Consensus 50 ~~p~~~V~GNHD~~~~~ 66 (238)
T cd07397 50 PLPKAVILGNHDAWYDA 66 (238)
T ss_pred CCCeEEEcCCCcccccc
Confidence 68999999999997653
No 34
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.42 E-value=1.4e-11 Score=119.43 Aligned_cols=86 Identities=21% Similarity=0.202 Sum_probs=57.4
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCccc--HHHHHHH-HHhhh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTD--VAESMIQ-AFGPA 138 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~--~~~~~~~-~l~~~ 138 (408)
|||+|+||+|+|....... ... .....++++.+.+.+.+||+|+++||+++...... ....+.+ .+..+
T Consensus 1 MKilhiSD~HLG~~~~~~~---~~~-----~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L 72 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPW---FQN-----YQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLL 72 (340)
T ss_pred CeEEEEeeecCCCcCCChh---hHH-----HHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 6999999999996542210 000 01234567777778899999999999987753222 2222333 34444
Q ss_pred HhcCCCEEEEcCCCCCC
Q 015362 139 MELGLPWAAVLGNHDQE 155 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~ 155 (408)
.+.++|+++++||||..
T Consensus 73 ~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 73 KEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHCCCeEEEEccCCCcc
Confidence 45689999999999974
No 35
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.42 E-value=1.2e-11 Score=122.34 Aligned_cols=88 Identities=23% Similarity=0.280 Sum_probs=58.6
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHH-HHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVA-ESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~-~~~~~~l~~~~~ 140 (408)
|||+|+||+|+|....+..+. . .....++++.+.+++.+||+||++||+++........ ..+.+.+..+..
T Consensus 1 mkilh~SDlHlG~~~~~~~~~---~-----~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~ 72 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRA---A-----EHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ 72 (407)
T ss_pred CEEEEEcccCCCCcccCcccH---H-----HHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh
Confidence 699999999998643221000 0 0112246677888889999999999988765432222 334455555555
Q ss_pred cCCCEEEEcCCCCCCCC
Q 015362 141 LGLPWAAVLGNHDQEST 157 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~~~ 157 (408)
.++|+++|+||||....
T Consensus 73 ~~~~v~~I~GNHD~~~~ 89 (407)
T PRK10966 73 TGCQLVVLAGNHDSVAT 89 (407)
T ss_pred cCCcEEEEcCCCCChhh
Confidence 68999999999998643
No 36
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.40 E-value=5.5e-13 Score=114.51 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=49.9
Q ss_pred CCCeEEEecCCCCCccccccCCcccccccccccCCCChH-HHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcC
Q 015362 271 QLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSG-VLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIG 349 (408)
Q Consensus 271 ~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~-~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg 349 (408)
....++++|.++.... .... +...+. ..+++++++||.|.. .....+|+.+++.|+.+
T Consensus 80 ~~~~i~~~H~~~~~~~-------------------~~~~~~~~~~~-~~~~~~~~~GH~H~~-~~~~~~~~~~~~~Gs~~ 138 (156)
T PF12850_consen 80 DGFKILLSHGHPYDVQ-------------------WDPAELREILS-RENVDLVLHGHTHRP-QVFKIGGIHVINPGSIG 138 (156)
T ss_dssp TTEEEEEESSTSSSST-------------------TTHHHHHHHHH-HTTSSEEEESSSSSE-EEEEETTEEEEEE-GSS
T ss_pred cCCeEEEECCCCcccc-------------------cChhhhhhhhc-ccCCCEEEcCCcccc-eEEEECCEEEEECCcCC
Confidence 3568999999776421 1122 334444 456999999999994 44557899999888877
Q ss_pred CCCCCCCCCCCceEEEEEe
Q 015362 350 YHGYGKAGWPRRARIILAE 368 (408)
Q Consensus 350 ~~~~~~~~~~~g~rv~~i~ 368 (408)
....+ + ++++-+++++
T Consensus 139 ~~~~~--~-~~~~~i~~~~ 154 (156)
T PF12850_consen 139 GPRHG--D-QSGYAILDIE 154 (156)
T ss_dssp S-SSS--S-SEEEEEEEET
T ss_pred CCCCC--C-CCEEEEEEEe
Confidence 65443 2 6789998886
No 37
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.34 E-value=1.3e-11 Score=106.03 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=51.1
Q ss_pred EEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCccc--HHHHHHHHHhhhHh--
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTD--VAESMIQAFGPAME-- 140 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~--~~~~~~~~l~~~~~-- 140 (408)
++|||+|++....... ...+. .+....+.+.+++++.+||+|+++||+++...... .+..+...+..+..
T Consensus 1 ~~isD~HL~~~~~~~~----l~~~~--~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (156)
T cd08165 1 MFLADTHLLGSILGHW----LDKLR--REWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHP 74 (156)
T ss_pred CccccchhcCCcccHH----HHHHh--hhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccC
Confidence 4689999965432210 00000 12234456778888999999999999987543211 12222222333222
Q ss_pred cCCCEEEEcCCCCCC
Q 015362 141 LGLPWAAVLGNHDQE 155 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~ 155 (408)
.++|+++|+||||..
T Consensus 75 ~~~~i~~v~GNHD~~ 89 (156)
T cd08165 75 PDLPLHVVVGNHDIG 89 (156)
T ss_pred CCCeEEEEcCCCCcC
Confidence 268999999999974
No 38
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.31 E-value=3.8e-11 Score=119.00 Aligned_cols=89 Identities=26% Similarity=0.355 Sum_probs=62.6
Q ss_pred eEEEEEeccCcCC-CCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCc-ccHHHHHHHHHhhhH
Q 015362 62 FKILQVADMHYGM-GKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSST-TDVAESMIQAFGPAM 139 (408)
Q Consensus 62 ~ri~~iSDlH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~-~~~~~~~~~~l~~~~ 139 (408)
|||+|+||+|+|. ......|. ....+++..+.+.+.+.++|+||++||+++.... ......+.+.+..+.
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~--------~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~ 72 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRL--------EDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLK 72 (390)
T ss_pred CeeEEecccccchhhccCccch--------HHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhc
Confidence 6999999999994 32221110 0112345666677778899999999998877543 234556667777766
Q ss_pred hcCCCEEEEcCCCCCCCCC
Q 015362 140 ELGLPWAAVLGNHDQESTM 158 (408)
Q Consensus 140 ~~~~p~~~v~GNHD~~~~~ 158 (408)
..++|+|+++||||.....
T Consensus 73 ~~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 73 DAGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred cCCCcEEEecCCCCchhcc
Confidence 6789999999999986543
No 39
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.30 E-value=7.8e-10 Score=97.72 Aligned_cols=72 Identities=31% Similarity=0.411 Sum_probs=50.2
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcC--CCCCcccHHHHHHHHHhhh
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNI--FGSSTTDVAESMIQAFGPA 138 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli--~~~~~~~~~~~~~~~l~~~ 138 (408)
.|||+++||+|-.... ++++..++...++|+++++||++ .-+. ......... +..+
T Consensus 3 ~mkil~vtDlHg~~~~--------------------~~k~~~~~~~~~~D~lviaGDlt~~~~~~-~~~~~~~~~-~e~l 60 (226)
T COG2129 3 KMKILAVTDLHGSEDS--------------------LKKLLNAAADIRADLLVIAGDLTYFHFGP-KEVAEELNK-LEAL 60 (226)
T ss_pred cceEEEEeccccchHH--------------------HHHHHHHHhhccCCEEEEecceehhhcCc-hHHHHhhhH-HHHH
Confidence 6999999999976542 35666776777999999999977 3332 222222111 4445
Q ss_pred HhcCCCEEEEcCCCCC
Q 015362 139 MELGLPWAAVLGNHDQ 154 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~ 154 (408)
....+|+++||||=|-
T Consensus 61 ~~~~~~v~avpGNcD~ 76 (226)
T COG2129 61 KELGIPVLAVPGNCDP 76 (226)
T ss_pred HhcCCeEEEEcCCCCh
Confidence 5679999999999775
No 40
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.29 E-value=1.7e-10 Score=99.61 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=36.6
Q ss_pred HHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCCCCCCCCCCCceEEEEEe
Q 015362 310 VLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAE 368 (408)
Q Consensus 310 ~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~~~~~~~~~~g~rv~~i~ 368 (408)
.+..+.+..+++++++||+|. .+....+|+.+++.|+.+-...+ + .+++-+++++
T Consensus 97 ~l~~~~~~~~~d~vi~GHtH~-~~~~~~~~~~~iNpGs~~~~~~~--~-~~~~~il~~~ 151 (158)
T TIGR00040 97 VLEYLAKELGVDVLIFGHTHI-PVAEELRGILLINPGSLTGPRNG--N-TPSYAILDVD 151 (158)
T ss_pred HHHHHHhccCCCEEEECCCCC-CccEEECCEEEEECCccccccCC--C-CCeEEEEEec
Confidence 344454445689999999999 45566788888877665532211 1 4578888875
No 41
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.25 E-value=5.5e-10 Score=98.16 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=44.2
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
+|+++||+|++.... ...+.+.+.+++.++|.|+++||+++ ....+.+.. ..
T Consensus 1 ~i~viSDtHl~~~~~-----------------~~~~~~~~~~~~~~~d~iih~GDi~~--------~~~~~~l~~---~~ 52 (178)
T cd07394 1 LVLVIGDLHIPHRAS-----------------DLPAKFKKLLVPGKIQHVLCTGNLCS--------KETYDYLKT---IA 52 (178)
T ss_pred CEEEEEecCCCCCch-----------------hhHHHHHHHhccCCCCEEEECCCCCC--------HHHHHHHHh---hC
Confidence 489999999886431 12245667776678999999999763 122222222 13
Q ss_pred CCEEEEcCCCCCC
Q 015362 143 LPWAAVLGNHDQE 155 (408)
Q Consensus 143 ~p~~~v~GNHD~~ 155 (408)
.|+++|.||||..
T Consensus 53 ~~~~~V~GN~D~~ 65 (178)
T cd07394 53 PDVHIVRGDFDEN 65 (178)
T ss_pred CceEEEECCCCcc
Confidence 4799999999974
No 42
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.24 E-value=4.4e-11 Score=109.88 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=49.4
Q ss_pred EEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHH--cCCCEEEEcCCcCCCC----CcccHHHHHHHHHhhh
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEA--EKPDFIAFTGDNIFGS----STTDVAESMIQAFGPA 138 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~pD~vv~~GDli~~~----~~~~~~~~~~~~l~~~ 138 (408)
+++||+|++.... ...+.+.+.+++ .+||+|+++||+++.. ......+.+.+.++.+
T Consensus 2 ~~iSDlHl~~~~~-----------------~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L 64 (231)
T TIGR01854 2 LFISDLHLSPERP-----------------DITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQV 64 (231)
T ss_pred eEEEecCCCCCCh-----------------hHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHH
Confidence 7999999986531 112334444443 3799999999988732 1122234555666665
Q ss_pred HhcCCCEEEEcCCCCCC
Q 015362 139 MELGLPWAAVLGNHDQE 155 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~ 155 (408)
.+.++|+|+|+||||+.
T Consensus 65 ~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 65 SDQGVPCYFMHGNRDFL 81 (231)
T ss_pred HHCCCeEEEEcCCCchh
Confidence 55579999999999984
No 43
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.24 E-value=2.2e-11 Score=107.08 Aligned_cols=74 Identities=28% Similarity=0.387 Sum_probs=45.9
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHH------------
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAE------------ 129 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~------------ 129 (408)
=||+.+||+|-. .+.++++.+++.+.+||+|+++||++-.....+.|+
T Consensus 6 ~kilA~s~~~g~--------------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~ 65 (255)
T PF14582_consen 6 RKILAISNFRGD--------------------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKS 65 (255)
T ss_dssp -EEEEEE--TT---------------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----TH
T ss_pred hhheeecCcchH--------------------HHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchh
Confidence 479999999842 355788999999999999999999875443222222
Q ss_pred -----------HHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 130 -----------SMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 130 -----------~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
.+.+.+..+-..++|+++||||||-.
T Consensus 66 ~i~~e~~~~~e~~~~ff~~L~~~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 66 EINEEECYDSEALDKFFRILGELGVPVFVVPGNMDAP 102 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-SEEEEE--TTS-S
T ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcEEEecCCCCch
Confidence 23355555556799999999999975
No 44
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=98.29 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=52.3
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHH-HHHHc-CCCEEEEcCCcCCCCCcccHHHHHHHHHhhhH
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKR-IIEAE-KPDFIAFTGDNIFGSSTTDVAESMIQAFGPAM 139 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~-~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 139 (408)
|+|-.|||+|+..... +.++.+.+.|..+. ++|.+ ..... .-|.|++.||+......++..+.+. .+.
T Consensus 1 M~iyaiaDLHLa~~~p-KpM~vFGe~W~gh~-----ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl~-~i~--- 70 (230)
T COG1768 1 MRIYAIADLHLALGVP-KPMEVFGEPWSGHH-----EKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAEEDLR-FIG--- 70 (230)
T ss_pred CceeeeehhhHhhCCC-CceeecCCcccCch-----HHHHHHHHhcCChhhEEEecccchhheechhhhhhhh-hhh---
Confidence 5788999999987654 44555555563322 22322 22222 2389999999765554433333332 222
Q ss_pred hcCCCEEEEcCCCCCCCC
Q 015362 140 ELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 140 ~~~~p~~~v~GNHD~~~~ 157 (408)
..+---|.+.|||||+..
T Consensus 71 ~LPG~K~m~rGNHDYWw~ 88 (230)
T COG1768 71 DLPGTKYMIRGNHDYWWS 88 (230)
T ss_pred cCCCcEEEEecCCccccc
Confidence 335557899999999876
No 45
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.19 E-value=4.2e-10 Score=94.41 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=39.9
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
||+++||+|.... .++..+||+|+++||+++... ...++.+.+.+. +.+
T Consensus 1 ~i~~isD~H~~~~---------------------------~~~~~~~D~vi~~GD~~~~~~-~~~~~~~~~~l~---~~~ 49 (135)
T cd07379 1 RFVCISDTHSRHR---------------------------TISIPDGDVLIHAGDLTERGT-LEELQKFLDWLK---SLP 49 (135)
T ss_pred CEEEEeCCCCCCC---------------------------cCcCCCCCEEEECCCCCCCCC-HHHHHHHHHHHH---hCC
Confidence 5899999995422 123468999999999875543 223334444433 334
Q ss_pred CC-EEEEcCCCCC
Q 015362 143 LP-WAAVLGNHDQ 154 (408)
Q Consensus 143 ~p-~~~v~GNHD~ 154 (408)
.| +++|+||||.
T Consensus 50 ~~~~~~v~GNHD~ 62 (135)
T cd07379 50 HPHKIVIAGNHDL 62 (135)
T ss_pred CCeEEEEECCCCC
Confidence 44 5789999995
No 46
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=6.8e-11 Score=109.93 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=60.3
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccH-HHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDV-AESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~-~~~~~~~l~~~~~ 140 (408)
|||+|+||+|++.......+. . .....++++.+.+.+++||+|+++||+++....... ...+.+.+..+.+
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~---~-----~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~ 72 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRL---A-----EQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSD 72 (253)
T ss_pred CEEEEEhhhcCCCccCCCChH---H-----HHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 689999999999754321110 0 011345677777788899999999998876643222 2345566666555
Q ss_pred cC-CCEEEEcCCCCCCCC
Q 015362 141 LG-LPWAAVLGNHDQEST 157 (408)
Q Consensus 141 ~~-~p~~~v~GNHD~~~~ 157 (408)
.. +|+++|+||||....
T Consensus 73 ~~~i~v~~i~GNHD~~~~ 90 (253)
T TIGR00619 73 ANPIPIVVISGNHDSAQR 90 (253)
T ss_pred cCCceEEEEccCCCChhh
Confidence 55 999999999998543
No 47
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.16 E-value=8.8e-10 Score=94.69 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=34.4
Q ss_pred CCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCCCCCCCCCCCceEEEEEec
Q 015362 318 GDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGKAGWPRRARIILAEA 369 (408)
Q Consensus 318 ~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~~~~~~~~~~g~rv~~i~~ 369 (408)
.+++++++||+|.. .....+|+.+++.|+.+.... ...+++.+++++.
T Consensus 101 ~~~d~vi~GHtH~~-~~~~~~~~~~inpGs~~~~~~---~~~~~~~i~~~~~ 148 (155)
T cd00841 101 GGADVVLYGHTHIP-VIEKIGGVLLLNPGSLSLPRG---GGPPTYAILEIDD 148 (155)
T ss_pred cCCCEEEECcccCC-ccEEECCEEEEeCCCccCcCC---CCCCeEEEEEecC
Confidence 35899999999994 555678888888777664321 2246888888863
No 48
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.11 E-value=7.3e-09 Score=96.68 Aligned_cols=215 Identities=17% Similarity=0.238 Sum_probs=106.3
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCC-EEEEcCCcCCCCCcccH--HHHHHHHHhhh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPD-FIAFTGDNIFGSSTTDV--AESMIQAFGPA 138 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD-~vv~~GDli~~~~~~~~--~~~~~~~l~~~ 138 (408)
++|+|++|+| ..... .... ..+...+..+.+.+++++|| +++.+||++........ -+...+.++
T Consensus 1 ~~il~~nd~~-~~~~~-~~~~--------~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~-- 68 (257)
T cd07406 1 FTILHFNDVY-EIAPL-DGGP--------VGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLN-- 68 (257)
T ss_pred CeEEEEccce-eeccc-CCCC--------cCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHH--
Confidence 5899999999 22211 0000 12344556666666677888 99999998865432111 122333333
Q ss_pred HhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCcc--ccCCCCCCCcccccCCccccccCccce-EEEeeCCCCCCCC
Q 015362 139 MELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVA--QVNPPAEDPSNLAKGGVMEKIDGFGNY-DLRVYGPPGSHLA 215 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~g~~~y-~~~v~~~~~~~~~ 215 (408)
..+.. ++++||||+..+ .+.+.++++....... .+.... .+. .......| .+.+.+
T Consensus 69 -~l~~d-~~~~GNHefd~g--~~~l~~~~~~~~~~~L~aNi~~~~-------~~~---~~~~~~~~~i~~~~g------- 127 (257)
T cd07406 69 -ALGVD-LACFGNHEFDFG--EDQLQKRLGESKFPWLSSNVFDAT-------GGG---PLPNGKESAIIERAG------- 127 (257)
T ss_pred -hcCCc-EEeecccccccC--HHHHHHHHhhCCCCEEEEEEEECC-------CCc---ccCCCCCeEEEEECC-------
Confidence 22443 668999998544 3344444443322110 000000 000 11111223 333332
Q ss_pred CcceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCccc
Q 015362 216 NSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVG 295 (408)
Q Consensus 216 ~~~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g 295 (408)
..+.++.+-+............+..-.+-.+.+++.++++++ ....-+|++.|-+....
T Consensus 128 --~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~---------~~~D~iVvl~H~g~~~d---------- 186 (257)
T cd07406 128 --VKIGLLGLVEEEWLETLTIDPEYVRYRDYVETARELVDELRE---------QGADLIIALTHMRLPND---------- 186 (257)
T ss_pred --eEEEEEEEecccccccccCCCCcceEcCHHHHHHHHHHHHHh---------CCCCEEEEEeccCchhh----------
Confidence 235677776643210000001121122344555565545542 24566788888765310
Q ss_pred ccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeC
Q 015362 296 QFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGG 346 (408)
Q Consensus 296 ~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~ 346 (408)
..+ +.+.+.|++|+.||.|.. .....+|..++.++
T Consensus 187 ------------~~l---a~~~~~iD~IlgGH~H~~-~~~~~~~t~vv~~g 221 (257)
T cd07406 187 ------------KRL---AREVPEIDLILGGHDHEY-ILVQVGGTPIVKSG 221 (257)
T ss_pred ------------HHH---HHhCCCCceEEeccccee-EeeeECCEEEEeCC
Confidence 112 233467999999999984 45556676666554
No 49
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.10 E-value=1.1e-08 Score=96.51 Aligned_cols=97 Identities=28% Similarity=0.355 Sum_probs=51.8
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEE-cCCcCCCCCcccHH--------HHHH
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAF-TGDNIFGSSTTDVA--------ESMI 132 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~-~GDli~~~~~~~~~--------~~~~ 132 (408)
++|++++|+|-..... .|..... ....+...+..+.+.+++.+||.+++ +||++++....... ....
T Consensus 1 l~il~t~D~Hg~~~~~-~~~~~~~---~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~ 76 (277)
T cd07410 1 LRILATSDLHGNLLPY-DYYTDKP---DASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMI 76 (277)
T ss_pred CeEEEEeccccceeCc-cccCCCc---CCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHH
Confidence 5899999999432211 1100000 00123444566666667778998887 99987654311111 1223
Q ss_pred HHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHH
Q 015362 133 QAFGPAMELGLPWAAVLGNHDQESTMDREELMYFIS 168 (408)
Q Consensus 133 ~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~ 168 (408)
+.++ ..++. ++++||||+..+ .+.+.+..+
T Consensus 77 ~~ln---~~g~d-~~~lGNHe~d~g--~~~l~~~~~ 106 (277)
T cd07410 77 AAMN---ALGYD-AGTLGNHEFNYG--LDYLDKVIK 106 (277)
T ss_pred HHHH---hcCCC-EEeecccCcccC--HHHHHHHHH
Confidence 3332 33554 667899998643 334444443
No 50
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.10 E-value=1.1e-09 Score=90.12 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=46.2
Q ss_pred EEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCC
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLP 144 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p 144 (408)
+++||+|.+...... ........+.+||+||++||+++...... ...+.. +........|
T Consensus 1 ~~~gD~h~~~~~~~~------------------~~~~~~~~~~~~~~vi~~GD~~~~~~~~~-~~~~~~-~~~~~~~~~~ 60 (131)
T cd00838 1 AVISDIHGNLEALEA------------------VLEAALAAAEKPDFVLVLGDLVGDGPDPE-EVLAAA-LALLLLLGIP 60 (131)
T ss_pred CeeecccCCccchHH------------------HHHHHHhcccCCCEEEECCcccCCCCCch-HHHHHH-HHHhhcCCCC
Confidence 478999998664210 01134455689999999999987665432 222221 2334567899
Q ss_pred EEEEcCCCC
Q 015362 145 WAAVLGNHD 153 (408)
Q Consensus 145 ~~~v~GNHD 153 (408)
+++++||||
T Consensus 61 ~~~~~GNHD 69 (131)
T cd00838 61 VYVVPGNHD 69 (131)
T ss_pred EEEeCCCce
Confidence 999999999
No 51
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.07 E-value=1.2e-08 Score=94.85 Aligned_cols=91 Identities=24% Similarity=0.293 Sum_probs=52.7
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCC-EEEEcCCcCCCCCccc--HHHHHHHHHhhh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPD-FIAFTGDNIFGSSTTD--VAESMIQAFGPA 138 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD-~vv~~GDli~~~~~~~--~~~~~~~~l~~~ 138 (408)
++|+++||+| +.... |. ...+...++.+.+.+++.+|| +++.+||+++.....+ ....+.+.+.
T Consensus 1 l~i~~~sD~h-g~~~~--~~--------~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~-- 67 (252)
T cd00845 1 LTILHTNDLH-GHFEP--AG--------GVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMN-- 67 (252)
T ss_pred CEEEEecccc-cCccc--cC--------CcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHH--
Confidence 5899999999 43211 00 001334556677777777888 8899999987654321 1122333332
Q ss_pred HhcCCCEEEEcCCCCCCCCCCHHHHHHHHHH
Q 015362 139 MELGLPWAAVLGNHDQESTMDREELMYFISL 169 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~ 169 (408)
..+ ..++++||||+.... +.+.+....
T Consensus 68 -~~g-~d~~~~GNHe~d~g~--~~l~~~~~~ 94 (252)
T cd00845 68 -ALG-YDAVTIGNHEFDYGL--DALAELYKD 94 (252)
T ss_pred -hcC-CCEEeeccccccccH--HHHHHHHHh
Confidence 223 456788999986443 334444443
No 52
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.04 E-value=4.1e-10 Score=100.50 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=52.4
Q ss_pred EEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCC--CEEEEcCCcCCCCCc----ccHHHHHHHHHhhh
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKP--DFIAFTGDNIFGSST----TDVAESMIQAFGPA 138 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p--D~vv~~GDli~~~~~----~~~~~~~~~~l~~~ 138 (408)
++|||+|++.... ...+.+.+.++...+ |.+.+.||+++.-.. ++...++.+.+..+
T Consensus 1 lFISDlHL~~~~p-----------------~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~ 63 (237)
T COG2908 1 LFISDLHLGPKRP-----------------ALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL 63 (237)
T ss_pred CeeeccccCCCCc-----------------HHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH
Confidence 4799999996643 123567777776655 999999998865432 22334455555555
Q ss_pred HhcCCCEEEEcCCCCCC
Q 015362 139 MELGLPWAAVLGNHDQE 155 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~ 155 (408)
.+.+.|+|+++||||+-
T Consensus 64 a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 64 ARKGTRVYYIHGNHDFL 80 (237)
T ss_pred HhcCCeEEEecCchHHH
Confidence 67789999999999963
No 53
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.02 E-value=5.8e-10 Score=101.34 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=45.1
Q ss_pred EEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHH---HcCCCEEEEcCCcCCCCCc-----ccHHHHHHHHHh
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIE---AEKPDFIAFTGDNIFGSST-----TDVAESMIQAFG 136 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~pD~vv~~GDli~~~~~-----~~~~~~~~~~l~ 136 (408)
++|||+|++...... ...+...+. ..+||.||++||+++.... ..........+.
T Consensus 1 ~~iSDlHlg~~~~~~-----------------~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~ 63 (217)
T cd07398 1 LFISDLHLGDGGPAA-----------------DFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALL 63 (217)
T ss_pred CEeeeecCCCCCCCH-----------------HHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHH
Confidence 479999999765321 112222222 2599999999998864211 111222212222
Q ss_pred hhHhcCCCEEEEcCCCCCC
Q 015362 137 PAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 137 ~~~~~~~p~~~v~GNHD~~ 155 (408)
.....+.++++|+||||..
T Consensus 64 ~~~~~~~~v~~v~GNHD~~ 82 (217)
T cd07398 64 RLADRGTRVYYVPGNHDFL 82 (217)
T ss_pred HHHHCCCeEEEECCCchHH
Confidence 3356789999999999984
No 54
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.01 E-value=1.1e-09 Score=101.24 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=52.7
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHH--HcCCCEEEEcCCcCCCCC----cccHHHHHHHHH
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIE--AEKPDFIAFTGDNIFGSS----TTDVAESMIQAF 135 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~pD~vv~~GDli~~~~----~~~~~~~~~~~l 135 (408)
||+++|||+|++.... ...+.+.+.++ +.+||+|+++||+++... .......+.+.+
T Consensus 1 M~i~~iSDlHl~~~~~-----------------~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l 63 (241)
T PRK05340 1 MPTLFISDLHLSPERP-----------------AITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAAL 63 (241)
T ss_pred CcEEEEeecCCCCCCh-----------------hHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHH
Confidence 6899999999986532 11233444443 368999999999886421 112334556666
Q ss_pred hhhHhcCCCEEEEcCCCCCC
Q 015362 136 GPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 136 ~~~~~~~~p~~~v~GNHD~~ 155 (408)
+.+.+.++|+++|+||||+.
T Consensus 64 ~~l~~~g~~v~~v~GNHD~~ 83 (241)
T PRK05340 64 KALSDSGVPCYFMHGNRDFL 83 (241)
T ss_pred HHHHHcCCeEEEEeCCCchh
Confidence 66556679999999999974
No 55
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.00 E-value=8.1e-09 Score=85.87 Aligned_cols=37 Identities=35% Similarity=0.368 Sum_probs=25.0
Q ss_pred HcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCC
Q 015362 106 AEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 153 (408)
Q Consensus 106 ~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD 153 (408)
..++|+|+++||+. . +... .+..+ .+.|+++|.||||
T Consensus 20 ~~~~d~ii~~GD~~-~----~~~~----~~~~~--~~~~~~~V~GN~D 56 (129)
T cd07403 20 LEGVDLILSAGDLP-K----EYLE----YLVTM--LNVPVYYVHGNHD 56 (129)
T ss_pred CCCCCEEEECCCCC-h----HHHH----HHHHH--cCCCEEEEeCCCc
Confidence 57899999999953 1 1111 12221 3678999999998
No 56
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.92 E-value=3e-09 Score=93.65 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=59.5
Q ss_pred EEEeccCcCCCCccccC-ccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhh-----
Q 015362 65 LQVADMHYGMGKVTRCR-DVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPA----- 138 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~----- 138 (408)
+++||.|+-........ .|. .+|. .+....+....+++..+||+|+++||+++.+.... .+.+.+.++.+
T Consensus 1 llvADPqllg~~~~~~~~~~~-~~~~--~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~-~~e~~e~l~Rf~~If~ 76 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWI-ARWD--SDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIAN-DDEYYSYVQRFINIFE 76 (195)
T ss_pred CcccCccccCCCCCCccccHH-HHHH--HHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCC-HHHHHHHHHHHHHHhc
Confidence 46889998765432110 011 1221 33344566677788889999999999998876422 22222222222
Q ss_pred HhcCCCEEEEcCCCCCCCC---CCHHHHHHHHH
Q 015362 139 MELGLPWAAVLGNHDQEST---MDREELMYFIS 168 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~~~---~~~~~~~~~~~ 168 (408)
....+|+++|+||||.+.. ...+.+.+|.+
T Consensus 77 ~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~ 109 (195)
T cd08166 77 VPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEK 109 (195)
T ss_pred CCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHH
Confidence 1347899999999999864 33444455533
No 57
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.89 E-value=3.3e-09 Score=92.90 Aligned_cols=86 Identities=24% Similarity=0.292 Sum_probs=54.4
Q ss_pred EEEeccCcCCCCccccCc-cccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHH-HhhhHhcC
Q 015362 65 LQVADMHYGMGKVTRCRD-VTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQA-FGPAMELG 142 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~-l~~~~~~~ 142 (408)
+++||+|+|......... ..|. ....++++++.+.+++.+||.||++||+++...... ....... +..+...+
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~----~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~-~~~~~~~~~~~~~~~~ 75 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPR----GQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLS-RQEFEEVAFLRLLAKD 75 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCc----ccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccC-HHHHHHHHHHHhccCC
Confidence 579999999754321111 1111 122356778888888999999999999986544222 1111111 22234568
Q ss_pred CCEEEEcCCCCCC
Q 015362 143 LPWAAVLGNHDQE 155 (408)
Q Consensus 143 ~p~~~v~GNHD~~ 155 (408)
+|+++|+||||..
T Consensus 76 ~~v~~i~GNHD~~ 88 (172)
T cd07391 76 VDVILIRGNHDGG 88 (172)
T ss_pred CeEEEEcccCccc
Confidence 8999999999974
No 58
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.86 E-value=9.4e-07 Score=82.84 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred eEEEEEeccCcCCCCccccC-cc-ccccccccCChHHHHHHHHHHHHc-CCCEE-EEcCCcCCCCCcccHHHHHHHHHhh
Q 015362 62 FKILQVADMHYGMGKVTRCR-DV-TATEFKYCSDLNTTRFLKRIIEAE-KPDFI-AFTGDNIFGSSTTDVAESMIQAFGP 137 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~-~pD~v-v~~GDli~~~~~~~~~~~~~~~l~~ 137 (408)
++|++++|+|-......... .. .+......-+...++.+.+.+++. +||.+ +.+||+++.... .....-...+..
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGE-ALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChH-HhhcCChhHHHH
Confidence 47999999998644321000 00 000001112444556666666667 89977 569998865432 111111122222
Q ss_pred hHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHH
Q 015362 138 AMELGLPWAAVLGNHDQESTMDREELMYFISL 169 (408)
Q Consensus 138 ~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~ 169 (408)
+ . .+++.++.||||+..+. +.+.++.+.
T Consensus 80 l-~-~~g~da~~GNHefd~g~--~~l~~~~~~ 107 (264)
T cd07411 80 L-N-ALGVDAMVGHWEFTYGP--ERVRELFGR 107 (264)
T ss_pred H-H-hhCCeEEecccccccCH--HHHHHHHhh
Confidence 2 2 25555555999986542 334444443
No 59
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.84 E-value=6.3e-09 Score=90.84 Aligned_cols=91 Identities=27% Similarity=0.305 Sum_probs=56.0
Q ss_pred EEEeccCcCCCCccccCccccccc-cccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCccc--HHHHHHHHHhhhHh-
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEF-KYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTD--VAESMIQAFGPAME- 140 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~--~~~~~~~~l~~~~~- 140 (408)
+.+||+|++.......+.+..... ....+....+.+..++++.+||+||++||+++...... .+....+.+..+..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 468999999765433222100000 01133345577778888899999999999987654321 23333333333221
Q ss_pred -----cCCCEEEEcCCCCCC
Q 015362 141 -----LGLPWAAVLGNHDQE 155 (408)
Q Consensus 141 -----~~~p~~~v~GNHD~~ 155 (408)
..+|+++|+||||..
T Consensus 81 ~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred cccccCCceEEEECCccccC
Confidence 268999999999985
No 60
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.80 E-value=1.2e-07 Score=91.52 Aligned_cols=109 Identities=20% Similarity=0.128 Sum_probs=61.8
Q ss_pred eccccccccCCCCCCccccCCCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCc
Q 015362 39 ISHDKIHLKKYPDLPLRFRYDGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDN 118 (408)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDl 118 (408)
+.+.+...+.. .+++..+||+.+||.|+-.......-.-.-.+|. .|....+.......-.+||.+++.|||
T Consensus 32 ~~c~Wp~~~~~------~~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~--~D~~lrr~f~~~~~~lkPdvvffLGDL 103 (410)
T KOG3662|consen 32 FQCQWPGKKQW------ASNENSTKILLVADPQILGNWPKKFLVSWLDKYG--NDWYLRRSFDMSQWRLKPDVVFFLGDL 103 (410)
T ss_pred ccccCCccccc------cCCCCceEEEEecCchhcCCCCCccccchHHhhh--hHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 56777754321 1224689999999999976332110000000111 122222222233334799999999999
Q ss_pred CCCCCc--ccH----HHHHHHHHhhhHhcCCCEEEEcCCCCCCCC
Q 015362 119 IFGSST--TDV----AESMIQAFGPAMELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 119 i~~~~~--~~~----~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~ 157 (408)
+|++.. .++ ++++.+++. .+..+|+..++||||.+..
T Consensus 104 fDeG~~~~~eEf~~~~~RfkkIf~--~k~~~~~~~i~GNhDIGf~ 146 (410)
T KOG3662|consen 104 FDEGQWAGDEEFKKRYERFKKIFG--RKGNIKVIYIAGNHDIGFG 146 (410)
T ss_pred cccCccCChHHHHHHHHHHHHhhC--CCCCCeeEEeCCccccccc
Confidence 986643 122 233333333 2358999999999999755
No 61
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=98.78 E-value=2e-07 Score=94.34 Aligned_cols=204 Identities=17% Similarity=0.260 Sum_probs=89.0
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCc----------------
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSST---------------- 124 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~---------------- 124 (408)
.+||++.|+-+...... ..+..+++..+|||+|++||.|+.+..
T Consensus 105 ~~r~a~~SC~~~~~~~~--------------------~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~ 164 (453)
T PF09423_consen 105 PFRFAFGSCQNYEDGYF--------------------PAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPE 164 (453)
T ss_dssp -EEEEEE----CCC-----------------------HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S-----
T ss_pred ceEEEEECCCCcccChH--------------------HHHHhhhccCCCcEEEEeCCeeeccCCcccccccccccccccc
Confidence 59999999998753321 223333333689999999999998742
Q ss_pred ----ccHHHHHH---------HHHhhhHhcCCCEEEEcCCCCCCCCCC--H--------HHHH--------HHHHHccCC
Q 015362 125 ----TDVAESMI---------QAFGPAMELGLPWAAVLGNHDQESTMD--R--------EELM--------YFISLMDYS 173 (408)
Q Consensus 125 ----~~~~~~~~---------~~l~~~~~~~~p~~~v~GNHD~~~~~~--~--------~~~~--------~~~~~~~~~ 173 (408)
....+.+. ..++. +.+.+|+++++-.||+.++.. . .... .|+...|..
T Consensus 165 p~~~~~~l~~yR~~y~~~~~~p~l~~-~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r 243 (453)
T PF09423_consen 165 PAHEAETLDDYRRRYRQYRSDPDLRR-LHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVR 243 (453)
T ss_dssp SSSS--SHHHHHHHHHHHHT-HHHHH-HHHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---
T ss_pred cccccccHHHHHHHHHHHcCCHHHHH-HhhcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhhcCcc
Confidence 01111111 12222 235789999999999976543 0 0010 111111110
Q ss_pred ccccCCCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCcCC------------cCcCCC
Q 015362 174 VAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRG------------VRTYGY 241 (408)
Q Consensus 174 ~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~~i~LDS~~~~~~~~------------~~~~g~ 241 (408)
... +. .....-++.+.++. .+.+++||+..+..... ......
T Consensus 244 ~~~--~~--------------~~~~~~y~~~~~G~----------~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~m 297 (453)
T PF09423_consen 244 NPD--PP--------------GDQGRIYRSFRYGD----------LVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTM 297 (453)
T ss_dssp GGG---B--------------TTB----EEEEETT----------TEEEEE--SSSS----CCCSSEE--HHHH-TT--S
T ss_pred CCC--cc--------------CCCCceEEEEecCC----------ceeEEEEechhccccccccccccccccccCCccCc
Confidence 000 00 00111245566553 36799999987643211 123456
Q ss_pred CcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccc--------cCCcccccccccccCCCChHHHHH
Q 015362 242 IKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLY--------YQNIVGQFQEAVACSRVNSGVLQT 313 (408)
Q Consensus 242 i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~--------~~~~~g~~~e~~~~~~~~~~~l~~ 313 (408)
++++|++||++.|++. ...+.||..-.|+....... .+...|. +....++++.
T Consensus 298 LG~~Q~~wL~~~L~~s------------~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~-------~~er~~Ll~~ 358 (453)
T PF09423_consen 298 LGEEQWDWLEDWLASS------------QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGY-------PAERQRLLDF 358 (453)
T ss_dssp S-HHHHHHHHHHHHH--------------SSEEEEE-SS--S---SS-SS-S--EETTSGGGS-------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC------------CCcEEEEEeCCceecccccccccccccCCCchhhC-------HHHHHHHHHH
Confidence 9999999999998775 36788888877765432211 1111111 1233478888
Q ss_pred HHhcCCe--EEEEeccCCCC
Q 015362 314 LVSLGDI--KAVFVGHDHTN 331 (408)
Q Consensus 314 l~~~~~V--~~v~~GH~H~n 331 (408)
|.+.+ + .++|+|-.|..
T Consensus 359 l~~~~-~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 359 LRESG-IRNVVFLSGDVHAS 377 (453)
T ss_dssp HHHTT----EEEEE-SSSSE
T ss_pred HHhhC-CCCEEEEecCcchh
Confidence 87764 5 48999999984
No 62
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.77 E-value=5.4e-07 Score=84.11 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=50.9
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccH--HHHHHHHHhhhH
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDV--AESMIQAFGPAM 139 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~--~~~~~~~l~~~~ 139 (408)
++|+++||+|........ ...+...+..+.+.+++.++++++.+||++.+...... .+...+.+ .
T Consensus 1 i~il~~~D~H~~~~~~~~----------~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l---n 67 (257)
T cd07408 1 ITILHTNDIHGRIDEDDN----------NGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIM---N 67 (257)
T ss_pred CEEEEeccCcccccCCCC----------ccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHH---H
Confidence 589999999965432100 01233344455555554467899999998865431110 11222332 2
Q ss_pred hcCCCEEEEcCCCCCCCCCCHHHHHHHHHH
Q 015362 140 ELGLPWAAVLGNHDQESTMDREELMYFISL 169 (408)
Q Consensus 140 ~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~ 169 (408)
..++.+ +++||||+..+ .+.+.++.+.
T Consensus 68 ~~g~d~-~~~GNHefd~G--~~~l~~~~~~ 94 (257)
T cd07408 68 AVGYDA-VTPGNHEFDYG--LDRLKELSKE 94 (257)
T ss_pred hcCCcE-EccccccccCC--HHHHHHHHhh
Confidence 346665 56899998643 3444444443
No 63
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.71 E-value=5.8e-07 Score=77.99 Aligned_cols=65 Identities=28% Similarity=0.314 Sum_probs=45.4
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
.+||+++||+|..... .....+.....++|+||++||.+.... ...+...
T Consensus 1 ~m~ilviSDtH~~~~~--------------------~~~~~~~~~~~~~d~vih~GD~~~~~~----~~~l~~~------ 50 (172)
T COG0622 1 MMKILVISDTHGPLRA--------------------IEKALKIFNLEKVDAVIHAGDSTSPFT----LDALEGG------ 50 (172)
T ss_pred CcEEEEEeccCCChhh--------------------hhHHHHHhhhcCCCEEEECCCcCCccc----hHHhhcc------
Confidence 3799999999976531 134555556789999999999775432 1222211
Q ss_pred cCCCEEEEcCCCCCC
Q 015362 141 LGLPWAAVLGNHDQE 155 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~ 155 (408)
...++++|.||.|..
T Consensus 51 ~~~~i~~V~GN~D~~ 65 (172)
T COG0622 51 LAAKLIAVRGNCDGE 65 (172)
T ss_pred cccceEEEEccCCCc
Confidence 257899999999985
No 64
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.71 E-value=2.4e-06 Score=81.08 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=45.7
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCC-EEEEcCCcCCCCCcccHH---HHHHHHHhh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPD-FIAFTGDNIFGSSTTDVA---ESMIQAFGP 137 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD-~vv~~GDli~~~~~~~~~---~~~~~~l~~ 137 (408)
++|++++|+|-.-... .+.. . ....+...+..+.+.+++..|+ +++.+||++......... +...+.+
T Consensus 1 i~il~tnD~Hg~~~~~-~~~~--~---~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~-- 72 (288)
T cd07412 1 VQILAINDFHGRLEPP-GKVV--T---VPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEAL-- 72 (288)
T ss_pred CeEEEEeccccCccCC-CCcc--c---cccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHH--
Confidence 4799999999432211 1000 0 0012334445555555656665 899999987543311111 1222222
Q ss_pred hHhcCCCEEEEcCCCCCCCC
Q 015362 138 AMELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 138 ~~~~~~p~~~v~GNHD~~~~ 157 (408)
...++. ++++||||+..+
T Consensus 73 -n~~g~D-a~t~GNHefd~G 90 (288)
T cd07412 73 -NAMGVD-ASAVGNHEFDEG 90 (288)
T ss_pred -HhhCCe-eeeecccccccC
Confidence 233555 467799998654
No 65
>PRK09453 phosphodiesterase; Provisional
Probab=98.69 E-value=3.1e-08 Score=87.57 Aligned_cols=71 Identities=18% Similarity=0.301 Sum_probs=48.0
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCc---cc--HHHHHHHHHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSST---TD--VAESMIQAFG 136 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~---~~--~~~~~~~~l~ 136 (408)
|||++|||+|... ..++.+.+.+++.+||.|+++||+++.... +. ....+.+.+
T Consensus 1 mri~viSD~Hg~~--------------------~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l- 59 (182)
T PRK09453 1 MKLMFASDTHGSL--------------------PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELL- 59 (182)
T ss_pred CeEEEEEeccCCH--------------------HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHH-
Confidence 6899999999431 124567777777899999999998864321 00 112233333
Q ss_pred hhHhcCCCEEEEcCCCCCC
Q 015362 137 PAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 137 ~~~~~~~p~~~v~GNHD~~ 155 (408)
.+.+.++++|.||||..
T Consensus 60 --~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 60 --NAYADKIIAVRGNCDSE 76 (182)
T ss_pred --HhcCCceEEEccCCcch
Confidence 33457899999999963
No 66
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.65 E-value=1.3e-05 Score=75.73 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=46.7
Q ss_pred eEEEEEeccCcCCCCccccCcccc-ccccccCChHHHHHHHHHHHHcCCC-EEEEcCCcCCCCCcccH--HHHHHHHHhh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTA-TEFKYCSDLNTTRFLKRIIEAEKPD-FIAFTGDNIFGSSTTDV--AESMIQAFGP 137 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~pD-~vv~~GDli~~~~~~~~--~~~~~~~l~~ 137 (408)
++|++.+|+|-............. .......+...+..+.+.+++..|+ +++.+||++.+...... -+...+.+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l-- 78 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFM-- 78 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHH--
Confidence 579999999965432110000000 0000012334445555555566787 45559998765432110 12222332
Q ss_pred hHhcCCCEEEEcCCCCCCCCC
Q 015362 138 AMELGLPWAAVLGNHDQESTM 158 (408)
Q Consensus 138 ~~~~~~p~~~v~GNHD~~~~~ 158 (408)
...++.+. ++||||+..+.
T Consensus 79 -n~~g~D~~-~lGNHefd~G~ 97 (281)
T cd07409 79 -NLLGYDAM-TLGNHEFDDGV 97 (281)
T ss_pred -HhcCCCEE-EeccccccCCH
Confidence 23466654 67999997553
No 67
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.64 E-value=6.3e-08 Score=88.12 Aligned_cols=87 Identities=14% Similarity=0.006 Sum_probs=55.9
Q ss_pred eEEEEEeccCcCCCCccccCcc-ccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDV-TATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
-+.+++||+|+|.......+.. .|. .+..++++++.+.+++.+||.|+++||+.........+..+.+.++.
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~----~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~--- 87 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPG----FQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEV--- 87 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCCh----hHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHh---
Confidence 4689999999997543211111 111 11224567777788888999999999987544321334444444432
Q ss_pred cCCCEEEEcCCCCCC
Q 015362 141 LGLPWAAVLGNHDQE 155 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~ 155 (408)
...++++|+||||..
T Consensus 88 ~~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 88 TFRDLILIRGNHDAL 102 (225)
T ss_pred cCCcEEEECCCCCCc
Confidence 346999999999964
No 68
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.61 E-value=3.2e-06 Score=94.78 Aligned_cols=218 Identities=17% Similarity=0.172 Sum_probs=109.3
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEE-cCCcCCCCCcccH--HHHHHHHHh
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAF-TGDNIFGSSTTDV--AESMIQAFG 136 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~-~GDli~~~~~~~~--~~~~~~~l~ 136 (408)
..++|++++|+|-.... ...+..+.+.+++.+||.+++ +||++.+...... .....+.+.
T Consensus 659 ~~l~Il~~nD~Hg~l~g-----------------~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln 721 (1163)
T PRK09419 659 WELTILHTNDFHGHLDG-----------------AAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMK 721 (1163)
T ss_pred eEEEEEEEeecccCCCC-----------------HHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHh
Confidence 35999999999933211 123455566666778998877 9998865421110 012222222
Q ss_pred hhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHc--------------cCCccccCCCCCCCcccccCCccccccCccce
Q 015362 137 PAMELGLPWAAVLGNHDQESTMDREELMYFISLM--------------DYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNY 202 (408)
Q Consensus 137 ~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~--------------~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y 202 (408)
..++ -++++||||+..+. +.+.++.... |.-...+.... -+. .......|
T Consensus 722 ---~lg~-d~~~~GNHEfd~g~--~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~-------~~~---~~~~~~py 785 (1163)
T PRK09419 722 ---EMGY-DASTFGNHEFDWGP--DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKK-------TGK---LVSWAKPY 785 (1163)
T ss_pred ---CcCC-CEEEecccccccCh--HHHHHHHHhcccccccccccCCCCCEEEEEEEeCC-------CCc---cccccCCE
Confidence 2233 35699999996553 3344444321 11000000000 000 00011123
Q ss_pred E-EEeeCCCCCCCCCcceeEEEEEeCCCCC--CcCCcCcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEec
Q 015362 203 D-LRVYGPPGSHLANSSILNLFFLDSGDRE--TVRGVRTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFH 279 (408)
Q Consensus 203 ~-~~v~~~~~~~~~~~~~~~~i~LDS~~~~--~~~~~~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~H 279 (408)
. +.+.+ ..+.++.+-+.... ..+.. ..|.-=.+..+.+++..++++++ ....-+|++.|
T Consensus 786 ~I~e~~G---------~kIgiiGltt~~~~~~~~p~~-~~~l~f~d~~e~~~~~v~~Lr~~--------~~~D~VV~LsH 847 (1163)
T PRK09419 786 ILVEVNG---------KKVGFIGLTTPETAYKTSPGN-VKNLEFKDPAEAAKKWVKELKEK--------EKVDAIIALTH 847 (1163)
T ss_pred EEEEECC---------EEEEEEEecccccccccCCCC-cCCcEEcCHHHHHHHHHHHHHhh--------cCCCEEEEEec
Confidence 3 23322 23556666543211 11110 01221223455666766667521 24677889999
Q ss_pred CCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeC
Q 015362 280 IPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGG 346 (408)
Q Consensus 280 hPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~ 346 (408)
........ .+ ..+..+...+.++|++++.||.|.. .....+|+.++.++
T Consensus 848 ~G~~~d~~------~~-----------~~~~~~lA~~v~gIDvIigGHsH~~-~~~~v~~~~ivqag 896 (1163)
T PRK09419 848 LGSNQDRT------TG-----------EITGLELAKKVKGVDAIISAHTHTL-VDKVVNGTPVVQAY 896 (1163)
T ss_pred CCcccccc------cc-----------ccHHHHHHHhCCCCCEEEeCCCCcc-ccccCCCEEEEeCC
Confidence 87643110 00 0123444555678999999999984 44455777666553
No 69
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.60 E-value=4e-06 Score=93.96 Aligned_cols=98 Identities=27% Similarity=0.323 Sum_probs=51.8
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEE-cCCcCCCCCcccH-----------H
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAF-TGDNIFGSSTTDV-----------A 128 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~-~GDli~~~~~~~~-----------~ 128 (408)
.++|++.+|+|-.-.......+. + ....+...+..+.+.++++.|+.+++ +||++.+....+. .
T Consensus 41 ~l~il~tnD~Hg~l~~~~y~~~~-~---~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~ 116 (1163)
T PRK09419 41 NIQILATTDLHGNFMDYDYASDK-E---TTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKT 116 (1163)
T ss_pred EEEEEEEecccccccccccccCC-C---CCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCc
Confidence 59999999999764321100000 0 00123444555666666677876665 9998865431110 0
Q ss_pred HHHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHH
Q 015362 129 ESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFIS 168 (408)
Q Consensus 129 ~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~ 168 (408)
....+++ ...++- ++++||||+..+. +.+.+..+
T Consensus 117 ~~~i~~m---N~lgyD-a~~lGNHEFd~G~--~~L~~~~~ 150 (1163)
T PRK09419 117 HPMIKAM---NALGYD-AGTLGNHEFNYGL--DFLDGTIK 150 (1163)
T ss_pred CHHHHHH---hhcCcc-EEeecccccccCH--HHHHHHHh
Confidence 1122222 233554 4579999996543 33444443
No 70
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.57 E-value=1.1e-07 Score=88.10 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=49.9
Q ss_pred EEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc-----CCCEEEEcCCcCCCCCc----c---------c
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE-----KPDFIAFTGDNIFGSST----T---------D 126 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~pD~vv~~GDli~~~~~----~---------~ 126 (408)
++|||+|++..... ...++.+.+.++.. +||.||++||+++.... . +
T Consensus 2 ~~iSDlHl~~~~~~---------------~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~ 66 (243)
T cd07386 2 VFISDVHVGSKTFL---------------EDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYE 66 (243)
T ss_pred EEecccCCCchhhh---------------HHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHH
Confidence 78999999865321 12345677777654 56999999999875311 0 1
Q ss_pred HHHHHHHHHhhhHhcCCCEEEEcCCCCCCC
Q 015362 127 VAESMIQAFGPAMELGLPWAAVLGNHDQES 156 (408)
Q Consensus 127 ~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~ 156 (408)
....+.+.++. +..++|+++++||||...
T Consensus 67 ~~~~~~~~l~~-L~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 67 QYEEAAEYLSD-VPSHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHHHHHHHHHh-cccCCeEEEeCCCCCccc
Confidence 12334444444 244799999999999864
No 71
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.53 E-value=3.5e-07 Score=93.20 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=56.2
Q ss_pred CCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHH---------HcCCCEEEEcCCcCCCCCc-c---
Q 015362 59 DGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIE---------AEKPDFIAFTGDNIFGSST-T--- 125 (408)
Q Consensus 59 ~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~~pD~vv~~GDli~~~~~-~--- 125 (408)
+..++|+++||+|++..... ...++.+.+.++ +.+||.||++||+++..+. +
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~---------------~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~ 305 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFL---------------EDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQE 305 (504)
T ss_pred CCccEEEEEcccCCCCcchh---------------HHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccch
Confidence 35799999999999875321 123456667776 6789999999999875321 0
Q ss_pred ---------cHHHHHHHHHhhhHhcCCCEEEEcCCCCCCC
Q 015362 126 ---------DVAESMIQAFGPAMELGLPWAAVLGNHDQES 156 (408)
Q Consensus 126 ---------~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~ 156 (408)
..+..+.+.+.. +...+|+++++||||...
T Consensus 306 ~~~~~~~~~~~~~~l~~~L~~-L~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 306 EELEIVDIYEQYEAAAEYLKQ-IPEDIKIIISPGNHDAVR 344 (504)
T ss_pred hhccchhhHHHHHHHHHHHHh-hhcCCeEEEecCCCcchh
Confidence 112344445544 345789999999999854
No 72
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.53 E-value=9.2e-06 Score=76.65 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=43.3
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChH-HHHHHHHHHHHcCCC-EEEEcCCcCCCCCcccH----HHHHHHH
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLN-TTRFLKRIIEAEKPD-FIAFTGDNIFGSSTTDV----AESMIQA 134 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~pD-~vv~~GDli~~~~~~~~----~~~~~~~ 134 (408)
.++|+|.+|+|-....... .......+ .... ..+.+.+..++.+|+ +++..||.+.+...... -....++
T Consensus 5 ~ltILhtnD~Hg~l~~~~~-~~~~~~~~---gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~ 80 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLN-DPNYSADW---GDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPI 80 (282)
T ss_pred eEEEEEEcccccCCcCcCC-cccccCCH---HHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHH
Confidence 6999999999954321100 00000001 1111 112232333344666 66779998865432111 1222333
Q ss_pred HhhhHhcCCCEEEEcCCCCCCCC
Q 015362 135 FGPAMELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 135 l~~~~~~~~p~~~v~GNHD~~~~ 157 (408)
+. ..++. ++++||||+...
T Consensus 81 mN---~mgyD-a~tlGNHEFd~g 99 (282)
T cd07407 81 FR---MMPYD-LLTIGNHELYNY 99 (282)
T ss_pred HH---hcCCc-EEeecccccCcc
Confidence 32 23444 568899999643
No 73
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.46 E-value=3e-05 Score=82.45 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEEEEec
Q 015362 247 LRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVG 326 (408)
Q Consensus 247 l~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~G 326 (408)
++-+++...+++++ ...-+|++.|--+...... .+ ..++.. .+.+.++|++|+.|
T Consensus 230 veaa~~~v~~Lr~~---------GaDvIIaLsH~G~~~d~~~-----~~---------~ena~~--~l~~v~gID~IlgG 284 (780)
T PRK09418 230 VETAKKMVPKMKAE---------GADVIVALAHSGVDKSGYN-----VG---------MENASY--YLTEVPGVDAVLMG 284 (780)
T ss_pred HHHHHHHHHHHHhc---------CCCEEEEEeccCccccccc-----cc---------chhhhH--HHhcCCCCCEEEEC
Confidence 44455665566532 4567888999876531100 00 012211 14566789999999
Q ss_pred cCCCCCcccCCCCeEEEEeC
Q 015362 327 HDHTNDFCGNLNGIWFCYGG 346 (408)
Q Consensus 327 H~H~n~~~~~~~gi~~~~~~ 346 (408)
|.|. .+....+|+.++.++
T Consensus 285 HsH~-~~~~~ingv~vvqaG 303 (780)
T PRK09418 285 HSHT-EVKDVFNGVPVVMPG 303 (780)
T ss_pred CCCC-cccccCCCEEEEEcC
Confidence 9999 466667888777664
No 74
>PHA02239 putative protein phosphatase
Probab=98.45 E-value=5.1e-07 Score=82.76 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=46.3
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc--CCCEEEEcCCcCCCCCcccHHHHHHHHHhhhH
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE--KPDFIAFTGDNIFGSSTTDVAESMIQAFGPAM 139 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 139 (408)
||+++|||+|.. . ..++.+.+.++.. ..|.|+++||+++.+.. ..+.+...+. +.
T Consensus 1 m~~~~IsDIHG~-~-------------------~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~--s~~v~~~l~~-~~ 57 (235)
T PHA02239 1 MAIYVVPDIHGE-Y-------------------QKLLTIMDKINNERKPEETIVFLGDYVDRGKR--SKDVVNYIFD-LM 57 (235)
T ss_pred CeEEEEECCCCC-H-------------------HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCC--hHHHHHHHHH-Hh
Confidence 589999999932 1 2245566666443 35999999999986643 2333333332 33
Q ss_pred hcCCCEEEEcCCCCC
Q 015362 140 ELGLPWAAVLGNHDQ 154 (408)
Q Consensus 140 ~~~~p~~~v~GNHD~ 154 (408)
..+.++++++||||.
T Consensus 58 ~~~~~~~~l~GNHE~ 72 (235)
T PHA02239 58 SNDDNVVTLLGNHDD 72 (235)
T ss_pred hcCCCeEEEECCcHH
Confidence 446789999999995
No 75
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.39 E-value=4.6e-05 Score=72.23 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=43.8
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc----CC-CEEEEcCCcCCCCCcccH--HHHHHHH
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE----KP-DFIAFTGDNIFGSSTTDV--AESMIQA 134 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~p-D~vv~~GDli~~~~~~~~--~~~~~~~ 134 (408)
++|++.+|+|-.-...... ..+...+..+.+.+++. +| -+++-+||++.+...... .....+.
T Consensus 1 ltIl~tnD~Hg~l~~~~~~----------~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~ 70 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTG----------EYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRG 70 (285)
T ss_pred CEEEEEcccccccccCCCC----------CccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHH
Confidence 5799999999764331100 01233334444444432 34 488999997744321110 0111222
Q ss_pred HhhhHhcCCCEEEEcCCCCCCCCC
Q 015362 135 FGPAMELGLPWAAVLGNHDQESTM 158 (408)
Q Consensus 135 l~~~~~~~~p~~~v~GNHD~~~~~ 158 (408)
+ ...++-+. ++||||+..+.
T Consensus 71 ~---n~~g~Da~-~~GNHEfD~G~ 90 (285)
T cd07405 71 M---NLVGYDAM-AVGNHEFDNPL 90 (285)
T ss_pred H---HhhCCcEE-eecccccccCH
Confidence 2 23366655 66999997653
No 76
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.39 E-value=3e-05 Score=80.40 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=43.7
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc----CC-CEEEEcCCcCCCCCcccHH--HHHHH
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE----KP-DFIAFTGDNIFGSSTTDVA--ESMIQ 133 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~p-D~vv~~GDli~~~~~~~~~--~~~~~ 133 (408)
.++|++++|+|-....... . +.+...+..+.+.++++ +| -+++.+||.+.+....... ....+
T Consensus 34 ~ltil~tnD~Hg~~~~~~~---------~-~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~ 103 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEY---------G-EYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR 103 (551)
T ss_pred EEEEEEecccCCCcccccc---------C-CccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHH
Confidence 5999999999976432110 0 01223333344443322 33 5788999977543211100 11122
Q ss_pred HHhhhHhcCCCEEEEcCCCCCCCCC
Q 015362 134 AFGPAMELGLPWAAVLGNHDQESTM 158 (408)
Q Consensus 134 ~l~~~~~~~~p~~~v~GNHD~~~~~ 158 (408)
.+ ...++-+. ++||||+..+.
T Consensus 104 ~m---N~~g~Da~-tlGNHEFD~G~ 124 (551)
T PRK09558 104 GM---NLIGYDAM-AVGNHEFDNPL 124 (551)
T ss_pred HH---hcCCCCEE-cccccccCcCH
Confidence 22 23356544 66999997663
No 77
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.38 E-value=3.8e-05 Score=75.71 Aligned_cols=93 Identities=24% Similarity=0.397 Sum_probs=61.4
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcc-cHHHHHHHHH---
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTT-DVAESMIQAF--- 135 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~-~~~~~~~~~l--- 135 (408)
+.+||++.||.|+|.......+. .....+++.+.....+.+.|+|+++|||+...... .......+.|
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg--------~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRry 83 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRG--------DDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRY 83 (646)
T ss_pred cceEEEEeecCccccccCCcccc--------cchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHH
Confidence 67999999999999876432221 12345677788888889999999999988655421 1111111111
Q ss_pred ------------------------------hhhHhcCCCEEEEcCCCCCCCCCCH
Q 015362 136 ------------------------------GPAMELGLPWAAVLGNHDQESTMDR 160 (408)
Q Consensus 136 ------------------------------~~~~~~~~p~~~v~GNHD~~~~~~~ 160 (408)
.+.+.-.+|||.|-||||...+...
T Consensus 84 ClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~ 138 (646)
T KOG2310|consen 84 CLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGR 138 (646)
T ss_pred ccCCCceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccc
Confidence 1122347899999999999876543
No 78
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=98.34 E-value=5.8e-06 Score=80.49 Aligned_cols=194 Identities=16% Similarity=0.204 Sum_probs=106.7
Q ss_pred HHHHHHHcCCCEEEEcCCcCCCCCccc----------------------HHHHH---------HHHHhhhHhcCCCEEEE
Q 015362 100 LKRIIEAEKPDFIAFTGDNIFGSSTTD----------------------VAESM---------IQAFGPAMELGLPWAAV 148 (408)
Q Consensus 100 ~~~~i~~~~pD~vv~~GDli~~~~~~~----------------------~~~~~---------~~~l~~~~~~~~p~~~v 148 (408)
+-+.+.+++|||||+.||.|+.++... ..+++ ...|+. ..+.+||++.
T Consensus 160 aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqa-ahA~~Pwi~~ 238 (522)
T COG3540 160 AYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQA-AHAAFPWIVQ 238 (522)
T ss_pred HHHHHHhcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHH-hhccCCEEEE
Confidence 445667789999999999998775310 01111 122222 2468999999
Q ss_pred cCCCCCCCCCCHHH-------------------HHHHHHHccCCccccCCCCCCCcccccCCccccccCccceEEEeeCC
Q 015362 149 LGNHDQESTMDREE-------------------LMYFISLMDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGP 209 (408)
Q Consensus 149 ~GNHD~~~~~~~~~-------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~ 209 (408)
+-.||..++.+... ...|++.+|.......+ .+.-|-.+.++
T Consensus 239 WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~-----------------~~~lYR~~tyG-- 299 (522)
T COG3540 239 WDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPT-----------------DGRLYRSFTYG-- 299 (522)
T ss_pred eccccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCc-----------------cceeeeeeccc--
Confidence 99999987642211 01122223322111110 01112233322
Q ss_pred CCCCCCCcceeEEEEEeCCCCCCcC----Cc---------CcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEE
Q 015362 210 PGSHLANSSILNLFFLDSGDRETVR----GV---------RTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLA 276 (408)
Q Consensus 210 ~~~~~~~~~~~~~i~LDS~~~~~~~----~~---------~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv 276 (408)
+.+.+.+||+..|.... +. .....++++|.+||+..|... +..+.|+
T Consensus 300 --------~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~S------------katWnVi 359 (522)
T COG3540 300 --------PLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGAS------------KATWNVI 359 (522)
T ss_pred --------cccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhc------------chhhhhh
Confidence 34679999998775211 11 123468999999999998775 4677777
Q ss_pred EecCCCCCcccccc---CCcccccccccccCCCChHHHHHHHhcCCe--EEEEeccCCCCCccc
Q 015362 277 FFHIPIPETPQLYY---QNIVGQFQEAVACSRVNSGVLQTLVSLGDI--KAVFVGHDHTNDFCG 335 (408)
Q Consensus 277 ~~HhPl~~~~~~~~---~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V--~~v~~GH~H~n~~~~ 335 (408)
..-.|+........ ....-+....-.-+....+++.-|...+ + .++|.|-+|. .+..
T Consensus 360 a~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~-~~N~V~LtgDvH~-~wA~ 421 (522)
T COG3540 360 AQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRK-IRNTVVLTGDVHY-SWAH 421 (522)
T ss_pred hhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcC-CCCcEEEechhHH-HHHh
Confidence 77777643221111 0000000000111234457888777664 5 4899999997 4444
No 79
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.33 E-value=1.2e-06 Score=76.33 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=45.6
Q ss_pred EEEeccCcCCCCccccCccccccccccCC-hHHHHHHHHHHHHc--CCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEFKYCSD-LNTTRFLKRIIEAE--KPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~--~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
.++||+|+|......... + .... ....+.+.+.+++. ++|.|+++||+++..... ...+.++ +.
T Consensus 2 ~~isD~Hlg~~~~~~~~~--~----~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~----~~~~~l~---~~ 68 (168)
T cd07390 2 YFTSDTHFGHANILRFCN--R----PFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAG----TELELLS---RL 68 (168)
T ss_pred eEecccccCCHHHHccCC--C----CCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChH----HHHHHHH---hC
Confidence 479999999864321000 0 0001 11234455555553 789999999987654321 1122322 34
Q ss_pred CCCEEEEcCCCCCC
Q 015362 142 GLPWAAVLGNHDQE 155 (408)
Q Consensus 142 ~~p~~~v~GNHD~~ 155 (408)
+.|+++|+||||..
T Consensus 69 ~~~~~~v~GNHD~~ 82 (168)
T cd07390 69 NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCeEEEeCCCCch
Confidence 67899999999974
No 80
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.24 E-value=3.1e-05 Score=79.74 Aligned_cols=230 Identities=22% Similarity=0.208 Sum_probs=112.9
Q ss_pred CCeEEEEEeccCcCCCCcc-ccCccccccccccCChHHHHHHHHHHHHcC-CCEEEEcCCcCCCCCcccH---HHHHHHH
Q 015362 60 GTFKILQVADMHYGMGKVT-RCRDVTATEFKYCSDLNTTRFLKRIIEAEK-PDFIAFTGDNIFGSSTTDV---AESMIQA 134 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-pD~vv~~GDli~~~~~~~~---~~~~~~~ 134 (408)
..++|+|.+|+|-...... .++... ..+......+++.++++. ..++|-+||++++...... .....+.
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~------~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~ 98 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDT------DGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDL 98 (517)
T ss_pred eeEEEEEeccccccceeccccccCcc------cccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHH
Confidence 3699999999998765211 111000 012233344555555544 4689999999876432111 1222333
Q ss_pred HhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHH--ccCCccccCCCCCCCcccccCCccccccCccceEEEeeCCCCC
Q 015362 135 FGPAMELGLPWAAVLGNHDQESTMDREELMYFISL--MDYSVAQVNPPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGS 212 (408)
Q Consensus 135 l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~ 212 (408)
|. ..++- +.+.||||+..+. +.+.++... +|.-...+..... .+ ......|..+.+.+
T Consensus 99 mN---~m~yD-a~tiGNHEFd~g~--~~l~~~~~~~~fp~l~aNv~~~~~------~~----~~~~~Py~I~~~~g---- 158 (517)
T COG0737 99 LN---ALGYD-AMTLGNHEFDYGL--EALARLLDEAKFPVLSANVYDKNS------TG----PPFFKPYAIKEVGG---- 158 (517)
T ss_pred Hh---hcCCc-EEeecccccccCH--HHHHHHHhccCCceEEeeeEecCC------CC----ccCcCCeEEEecCC----
Confidence 33 22444 5577999997653 334444332 2321111111100 00 01111233333332
Q ss_pred CCCCcceeEEEEEeCCCCCCcCCc-CcCCCCcHHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccC
Q 015362 213 HLANSSILNLFFLDSGDRETVRGV-RTYGYIKESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQ 291 (408)
Q Consensus 213 ~~~~~~~~~~i~LDS~~~~~~~~~-~~~g~i~~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~ 291 (408)
..+.++.+-+......... ...++.=.+..+++++.+.+++++ ...-+|++.|-++........
T Consensus 159 -----~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~---------~vD~iI~LsH~G~~~d~~~~~- 223 (517)
T COG0737 159 -----VKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGE---------GVDVIIALSHLGIEDDLELAS- 223 (517)
T ss_pred -----eEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhc---------CCCEEEEEeccCcCccccccc-
Confidence 3466777765221111100 112333346788888888888732 256789999988864322110
Q ss_pred CcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCC----CcccCCCCeEEEEeC
Q 015362 292 NIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTN----DFCGNLNGIWFCYGG 346 (408)
Q Consensus 292 ~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n----~~~~~~~gi~~~~~~ 346 (408)
...+. ..... +.+++++.||.|.. ......+|+.++.++
T Consensus 224 ~~~~~-----------~~~~~-----~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag 266 (517)
T COG0737 224 EVPGD-----------VDVAV-----PGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAG 266 (517)
T ss_pred ccccc-----------ccccc-----cCcceEeccCCcccccCCcccCccCCEEEEccC
Confidence 00000 00000 34999999999962 111234566676664
No 81
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.20 E-value=4.4e-06 Score=75.22 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=56.2
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCc--ccHHHHHHHHHhhh
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSST--TDVAESMIQAFGPA 138 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~--~~~~~~~~~~l~~~ 138 (408)
.-+.+++||+|+|......-+...-.. ++-..+.+.+.+.++..+|+-||+.||+-.+.+. ..++..+...++.
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~---~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~- 94 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPR---YQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLEL- 94 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCc---hhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHH-
Confidence 357999999999976543211111111 1222344556668888999999999997655443 2233444444432
Q ss_pred HhcCCCEEEEcCCCCCCC
Q 015362 139 MELGLPWAAVLGNHDQES 156 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~~ 156 (408)
.+.. -|.+|.||||.+.
T Consensus 95 ~~~~-evi~i~GNHD~~i 111 (235)
T COG1407 95 LDER-EVIIIRGNHDNGI 111 (235)
T ss_pred hccC-cEEEEeccCCCcc
Confidence 2222 5999999999864
No 82
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.19 E-value=0.00018 Score=76.84 Aligned_cols=98 Identities=26% Similarity=0.374 Sum_probs=51.4
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCC-EEEEcCCcCCCCCcccHH-----------
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPD-FIAFTGDNIFGSSTTDVA----------- 128 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD-~vv~~GDli~~~~~~~~~----------- 128 (408)
.++|++.+|+|-.-.......+ .+. ...+...+..+++.++++.++ ++|..||++.+....+..
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~-~~~---~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~ 190 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQD-KPS---QTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQ 190 (814)
T ss_pred EEEEEEEEeecCCccccccccc-Ccc---ccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcc
Confidence 5899999999976433211000 000 011333344455555555554 788999988654321110
Q ss_pred HHHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHH
Q 015362 129 ESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFIS 168 (408)
Q Consensus 129 ~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~ 168 (408)
....++|. ..++. ..++||||+..+. +.+.++..
T Consensus 191 ~P~i~amN---~LGyD-A~tLGNHEFDyG~--d~L~~~l~ 224 (814)
T PRK11907 191 HPMYAALE---ALGFD-AGTLGNHEFNYGL--DYLEKVIA 224 (814)
T ss_pred hHHHHHHh---ccCCC-EEEechhhcccCH--HHHHHHHH
Confidence 01223332 33555 5588999997653 33444444
No 83
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.18 E-value=0.00013 Score=69.90 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=46.7
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc----CC-CEEEEcCCcCCCCCcccH---------
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE----KP-DFIAFTGDNIFGSSTTDV--------- 127 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~p-D~vv~~GDli~~~~~~~~--------- 127 (408)
++|+|.+|+|-...... +...+..+.+.+++. .+ -+++.+||++.+......
T Consensus 1 l~IlhtnD~Hg~~~~~g--------------g~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~ 66 (313)
T cd08162 1 LQLLHTSDGESGLLAED--------------DAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGD 66 (313)
T ss_pred CeEEEecccccCccccC--------------CHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhcccccccc
Confidence 47999999997643211 122333444444433 33 489999997754321100
Q ss_pred -HHHHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHH
Q 015362 128 -AESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISL 169 (408)
Q Consensus 128 -~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~ 169 (408)
-....+++. ..++. ++++||||+..+ .+.+.++.+.
T Consensus 67 ~G~~~i~~mN---~~g~D-a~tlGNHEFD~G--~~~L~~~~~~ 103 (313)
T cd08162 67 PGRADILILN---ALGVQ-AIALGNHEFDLG--TDELADLIRP 103 (313)
T ss_pred CChHHHHHHh---ccCCc-EEeccccccccC--HHHHHHHHHh
Confidence 011222222 33555 457899998654 3445555444
No 84
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.16 E-value=0.00012 Score=75.65 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=47.9
Q ss_pred eEEEEEeccCcCCCCccc----cCccccccccccCChHHHHHHHHHHHHcCC-CEEEEcCCcCCCCCcccHH--HHHHHH
Q 015362 62 FKILQVADMHYGMGKVTR----CRDVTATEFKYCSDLNTTRFLKRIIEAEKP-DFIAFTGDNIFGSSTTDVA--ESMIQA 134 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p-D~vv~~GDli~~~~~~~~~--~~~~~~ 134 (408)
++|+|++|+|-.-..... +.+. ...+..+...+..+.+.+++..| -+++.+||.+.+....... +...+.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~---~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~ 77 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQ---LKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAAL 77 (550)
T ss_pred CEEEEEccccccccCcccccccCCCc---cccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHH
Confidence 579999999965332110 0000 00011233333444444444445 5888999987543211111 111222
Q ss_pred HhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHH
Q 015362 135 FGPAMELGLPWAAVLGNHDQESTMDREELMYFIS 168 (408)
Q Consensus 135 l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~ 168 (408)
+. ..++- ++++||||+..+. +.+.++..
T Consensus 78 ~N---~~g~D-a~~lGNHEFd~G~--~~l~~~~~ 105 (550)
T TIGR01530 78 MN---AAGFD-FFTLGNHEFDAGN--EGLKEFLE 105 (550)
T ss_pred Hh---ccCCC-EEEeccccccCCH--HHHHHHHH
Confidence 22 23444 6688999997553 33444443
No 85
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.15 E-value=0.00026 Score=74.26 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=50.9
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCC-CEEEEcCCcCCCCCcccHH----------H
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKP-DFIAFTGDNIFGSSTTDVA----------E 129 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p-D~vv~~GDli~~~~~~~~~----------~ 129 (408)
.++|++.+|+|-.-.......+ .+. .+.+...+..+++.++++.+ -++|-.||++.+....+.. .
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~-~~~---~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~ 77 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKD-KPT---DKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMH 77 (626)
T ss_pred eEEEEEEcCCccCccCCcccCC-CCC---CCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcC
Confidence 4899999999976443211000 000 01233444455555554444 4788999988654321110 1
Q ss_pred HHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHH
Q 015362 130 SMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFIS 168 (408)
Q Consensus 130 ~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~ 168 (408)
...++|. ..++- ..++||||+..+. +.+.++..
T Consensus 78 p~~~~mN---~lgyD-a~tlGNHEFd~G~--~~L~~~~~ 110 (626)
T TIGR01390 78 PVYKAMN---LLKYD-VGNLGNHEFNYGL--PFLKQAIA 110 (626)
T ss_pred hHHHHHh---hcCcc-EEecccccccccH--HHHHHHHH
Confidence 1222222 33555 4688999987553 33444444
No 86
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.14 E-value=0.00022 Score=74.95 Aligned_cols=98 Identities=24% Similarity=0.298 Sum_probs=51.1
Q ss_pred CeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCC-CEEEEcCCcCCCCCcccHHH----------
Q 015362 61 TFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKP-DFIAFTGDNIFGSSTTDVAE---------- 129 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p-D~vv~~GDli~~~~~~~~~~---------- 129 (408)
.++|++.+|+|-.-.......+ .+. ...++..+..+++.++++.+ -++|-.||++.+....+...
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~-~~~---~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~ 100 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKD-KPT---EKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVH 100 (649)
T ss_pred eEEEEEEcccccCccCCccccC-Ccc---cccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcc
Confidence 5999999999976433211000 000 01233344555555555555 47889999886543211110
Q ss_pred HHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHH
Q 015362 130 SMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFIS 168 (408)
Q Consensus 130 ~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~ 168 (408)
...+++. ..++- ..++||||+..+. +.+.+...
T Consensus 101 p~i~amN---~lgyD-a~tlGNHEFd~G~--~~L~~~~~ 133 (649)
T PRK09420 101 PVYKAMN---TLDYD-VGNLGNHEFNYGL--DYLKKALA 133 (649)
T ss_pred hHHHHHH---hcCCc-EEeccchhhhcCH--HHHHHHHh
Confidence 1222322 33555 5588999986543 33444433
No 87
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.04 E-value=0.00018 Score=67.04 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=30.1
Q ss_pred cCCCEEEEcCCcCCCCCccc-----------HHHHHHHHHhhhHhcCCCEEEEcCCCCC
Q 015362 107 EKPDFIAFTGDNIFGSSTTD-----------VAESMIQAFGPAMELGLPWAAVLGNHDQ 154 (408)
Q Consensus 107 ~~pD~vv~~GDli~~~~~~~-----------~~~~~~~~l~~~~~~~~p~~~v~GNHD~ 154 (408)
.++|+||++||+-......+ ....+.+.+......++|+++|.||||.
T Consensus 27 ~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~ 85 (262)
T cd00844 27 TKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEA 85 (262)
T ss_pred CCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCC
Confidence 47999999999643322111 1122333333334468889999999995
No 88
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.03 E-value=6.6e-06 Score=77.15 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=43.6
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHH-HcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIE-AEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
|++++|||+|-... .++.+.+.++ ..++|.++++||+|+.+. +..+.+. .+. +
T Consensus 1 M~~~vIGDIHG~~~--------------------~l~~ll~~~~~~~~~D~li~lGDlVdrGp--~s~~vl~-~l~---~ 54 (275)
T PRK00166 1 MATYAIGDIQGCYD--------------------ELQRLLEKIDFDPAKDTLWLVGDLVNRGP--DSLEVLR-FVK---S 54 (275)
T ss_pred CcEEEEEccCCCHH--------------------HHHHHHHhcCCCCCCCEEEEeCCccCCCc--CHHHHHH-HHH---h
Confidence 57999999994322 2333444333 246899999999997664 3333332 222 2
Q ss_pred cCCCEEEEcCCCCC
Q 015362 141 LGLPWAAVLGNHDQ 154 (408)
Q Consensus 141 ~~~p~~~v~GNHD~ 154 (408)
.+.++++|.||||.
T Consensus 55 l~~~~~~VlGNHD~ 68 (275)
T PRK00166 55 LGDSAVTVLGNHDL 68 (275)
T ss_pred cCCCeEEEecChhH
Confidence 35678999999997
No 89
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.96 E-value=1.3e-05 Score=72.31 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=40.8
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHH-cCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEA-EKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
||++|||+|-.. ..++.+.+.+.. .++|.|+++||+++.+.. ..+.+ +.+ ..
T Consensus 2 ri~~isDiHg~~--------------------~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~--~~~~~-~~l----~~ 54 (207)
T cd07424 2 RDFVVGDIHGHY--------------------SLLQKALDAVGFDPARDRLISVGDLIDRGPE--SLACL-ELL----LE 54 (207)
T ss_pred CEEEEECCCCCH--------------------HHHHHHHHHcCCCCCCCEEEEeCCcccCCCC--HHHHH-HHH----hc
Confidence 689999999321 123334443332 368999999999876542 22222 222 22
Q ss_pred CCCEEEEcCCCCCC
Q 015362 142 GLPWAAVLGNHDQE 155 (408)
Q Consensus 142 ~~p~~~v~GNHD~~ 155 (408)
.++++|.||||..
T Consensus 55 -~~~~~v~GNhe~~ 67 (207)
T cd07424 55 -PWFHAVRGNHEQM 67 (207)
T ss_pred -CCEEEeECCChHH
Confidence 4689999999964
No 90
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.92 E-value=0.0028 Score=58.81 Aligned_cols=61 Identities=23% Similarity=0.414 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHH
Q 015362 99 FLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISL 169 (408)
Q Consensus 99 ~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~ 169 (408)
.+.+..++.++|+++..||...+..... ....+. +...++.++ +.|||++... ++.+++..
T Consensus 20 ~l~~lk~~~~~D~vi~NgEn~~gg~gl~--~~~~~~---L~~~G~D~i-TlGNH~fD~g----el~~~l~~ 80 (255)
T cd07382 20 HLPKLKKEYKIDFVIANGENAAGGKGIT--PKIAKE---LLSAGVDVI-TMGNHTWDKK----EILDFIDE 80 (255)
T ss_pred HHHHHHHHCCCCEEEECCccccCCCCCC--HHHHHH---HHhcCCCEE-EecccccCcc----hHHHHHhc
Confidence 3444445678999999999876542211 222222 345577766 4599998655 34555443
No 91
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.88 E-value=3.1e-05 Score=69.84 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=30.5
Q ss_pred cCCCEEEEcCCcCCCCCcccHH-HHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 107 EKPDFIAFTGDNIFGSSTTDVA-ESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 107 ~~pD~vv~~GDli~~~~~~~~~-~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
.+.|.++++||+++.+...... +.+.+.-....+.+.++++++||||..
T Consensus 31 ~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 31 GGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 3689999999999776432211 112111111123467899999999974
No 92
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.87 E-value=2.9e-05 Score=71.47 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=42.5
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHH----H------cCCCEEEEcCCcCCCCCcccHHHHH
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIE----A------EKPDFIAFTGDNIFGSSTTDVAESM 131 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~------~~pD~vv~~GDli~~~~~~~~~~~~ 131 (408)
+||+++||+|-... .++.+.+.+. + .+.|.++++||+|+.+.. ..+.+
T Consensus 1 ~~i~vigDIHG~~~--------------------~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~--s~evl 58 (234)
T cd07423 1 GPFDIIGDVHGCYD--------------------ELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD--SPEVL 58 (234)
T ss_pred CCeEEEEECCCCHH--------------------HHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC--HHHHH
Confidence 47999999996432 2333444331 1 136899999999987643 22333
Q ss_pred HHHHhhhHhcCCCEEEEcCCCCC
Q 015362 132 IQAFGPAMELGLPWAAVLGNHDQ 154 (408)
Q Consensus 132 ~~~l~~~~~~~~p~~~v~GNHD~ 154 (408)
+.+..+ .....+++|.||||.
T Consensus 59 -~~l~~l-~~~~~~~~v~GNHE~ 79 (234)
T cd07423 59 -RLVMSM-VAAGAALCVPGNHDN 79 (234)
T ss_pred -HHHHHH-hhCCcEEEEECCcHH
Confidence 333332 223468899999996
No 93
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.76 E-value=0.00012 Score=64.58 Aligned_cols=57 Identities=23% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCEEEEcCCcCCCCCccc-----HHHHHHHHHhhhHh---------------cCCCEEEEcCCCCCCC
Q 015362 100 LKRIIEAEKPDFIAFTGDNIFGSSTTD-----VAESMIQAFGPAME---------------LGLPWAAVLGNHDQES 156 (408)
Q Consensus 100 ~~~~i~~~~pD~vv~~GDli~~~~~~~-----~~~~~~~~l~~~~~---------------~~~p~~~v~GNHD~~~ 156 (408)
...+....+||.|+++|||++..-..+ ...++.+.+-.-.. .++|++.|+||||...
T Consensus 36 ~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 36 VSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 334445689999999999997643211 12333333311000 1489999999999964
No 94
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.74 E-value=6.3e-05 Score=69.67 Aligned_cols=42 Identities=19% Similarity=0.005 Sum_probs=27.9
Q ss_pred CCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCC
Q 015362 109 PDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 154 (408)
Q Consensus 109 pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~ 154 (408)
-|.+|++||+||.+. ++.+.+.-+ ..+ ....+++++.||||.
T Consensus 37 ~d~li~lGDliDRGp--~S~~vl~~~-~~~-~~~~~~~~l~GNHE~ 78 (245)
T PRK13625 37 QRKLAFVGDLTDRGP--HSLRMIEIV-WEL-VEKKAAYYVPGNHCN 78 (245)
T ss_pred CCEEEEECcccCCCc--ChHHHHHHH-HHH-hhCCCEEEEeCccHH
Confidence 479999999998764 333333322 222 234579999999984
No 95
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.63 E-value=5.1e-05 Score=68.98 Aligned_cols=65 Identities=25% Similarity=0.140 Sum_probs=41.5
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHH-cCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEA-EKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
-|+.+|||+|-... .++.+.+.++. .+.|.++++||+|+.+.. ..+.+. .+. +
T Consensus 17 ~ri~vigDIHG~~~--------------------~L~~lL~~i~~~~~~D~li~lGDlvDrGp~--s~~vl~-~l~---~ 70 (218)
T PRK11439 17 RHIWLVGDIHGCFE--------------------QLMRKLRHCRFDPWRDLLISVGDLIDRGPQ--SLRCLQ-LLE---E 70 (218)
T ss_pred CeEEEEEcccCCHH--------------------HHHHHHHhcCCCcccCEEEEcCcccCCCcC--HHHHHH-HHH---c
Confidence 48999999996432 23334444432 257999999999987643 333332 221 1
Q ss_pred cCCCEEEEcCCCCC
Q 015362 141 LGLPWAAVLGNHDQ 154 (408)
Q Consensus 141 ~~~p~~~v~GNHD~ 154 (408)
..+++|.||||.
T Consensus 71 --~~~~~v~GNHE~ 82 (218)
T PRK11439 71 --HWVRAVRGNHEQ 82 (218)
T ss_pred --CCceEeeCchHH
Confidence 246789999995
No 96
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.60 E-value=6.9e-05 Score=68.12 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=41.2
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHH-HcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIE-AEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
-||++|||+|-.. ..++.+.+.+. ..+.|.++++||+++.+.. ..+.+. .+ .
T Consensus 15 ~ri~visDiHg~~--------------------~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~--~~~~l~-~l----~ 67 (218)
T PRK09968 15 RHIWVVGDIHGEY--------------------QLLQSRLHQLSFCPETDLLISVGDNIDRGPE--SLNVLR-LL----N 67 (218)
T ss_pred CeEEEEEeccCCH--------------------HHHHHHHHhcCCCCCCCEEEECCCCcCCCcC--HHHHHH-HH----h
Confidence 3899999999532 12333333333 2468999999999976643 223332 22 1
Q ss_pred cCCCEEEEcCCCCC
Q 015362 141 LGLPWAAVLGNHDQ 154 (408)
Q Consensus 141 ~~~p~~~v~GNHD~ 154 (408)
. ..+++|.||||.
T Consensus 68 ~-~~~~~v~GNHE~ 80 (218)
T PRK09968 68 Q-PWFISVKGNHEA 80 (218)
T ss_pred h-CCcEEEECchHH
Confidence 1 247899999996
No 97
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.60 E-value=7.4e-05 Score=68.08 Aligned_cols=55 Identities=20% Similarity=0.083 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 98 RFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
..+.+.+...++|.+|++||+++.+.. ..+.+. .+..+...+.+++++.||||..
T Consensus 14 ~~~l~~~~~~~~d~li~lGD~vdrg~~--~~~~l~-~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 14 LRLLEKIGFPPNDKLIFLGDYVDRGPD--SVEVID-LLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred HHHHHHhCCCCCCEEEEECCEeCCCCC--cHHHHH-HHHHhcCCCCcEEEEccCchhh
Confidence 445555544678999999999987643 222222 2222211156899999999974
No 98
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.56 E-value=9.4e-05 Score=68.66 Aligned_cols=65 Identities=25% Similarity=0.261 Sum_probs=41.3
Q ss_pred EEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHH-cCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCC
Q 015362 65 LQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEA-EKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGL 143 (408)
Q Consensus 65 ~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~ 143 (408)
.+|+|+|-... .++.+.+.+.. .+.|.++++||+|+.+. +..+.+. .+. +.+.
T Consensus 2 yvIGDIHG~~~--------------------~L~~LL~~i~~~~~~D~Li~lGDlVdRGp--~s~evl~-~l~---~l~~ 55 (257)
T cd07422 2 YAIGDIQGCYD--------------------ELQRLLEKINFDPAKDRLWLVGDLVNRGP--DSLETLR-FVK---SLGD 55 (257)
T ss_pred EEEECCCCCHH--------------------HHHHHHHhcCCCCCCCEEEEecCcCCCCc--CHHHHHH-HHH---hcCC
Confidence 57999995422 23444444432 35799999999998764 3333333 222 2235
Q ss_pred CEEEEcCCCCCC
Q 015362 144 PWAAVLGNHDQE 155 (408)
Q Consensus 144 p~~~v~GNHD~~ 155 (408)
.+.+|.||||..
T Consensus 56 ~v~~VlGNHD~~ 67 (257)
T cd07422 56 SAKTVLGNHDLH 67 (257)
T ss_pred CeEEEcCCchHH
Confidence 789999999973
No 99
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.54 E-value=0.00019 Score=67.15 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=42.3
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHH------cCCCEEEEcCCcCCCCCcccHHHHHHHHHh
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEA------EKPDFIAFTGDNIFGSSTTDVAESMIQAFG 136 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~pD~vv~~GDli~~~~~~~~~~~~~~~l~ 136 (408)
++++|+|+|-... .++.+.+.|.+ ...+.+|++||+|+.+.. ..+.+ +.+.
T Consensus 3 ~iyaIGDIHG~~d--------------------~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPd--S~eVl-d~L~ 59 (304)
T cd07421 3 VVICVGDIHGYIS--------------------KLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPE--TRKVI-DFLI 59 (304)
T ss_pred eEEEEEeccCCHH--------------------HHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCC--HHHHH-HHHH
Confidence 6899999995432 23445444442 235789999999987653 22222 2222
Q ss_pred hhHhcC--CCEEEEcCCCCCC
Q 015362 137 PAMELG--LPWAAVLGNHDQE 155 (408)
Q Consensus 137 ~~~~~~--~p~~~v~GNHD~~ 155 (408)
.+.... ..++++.||||..
T Consensus 60 ~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 60 SLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred HhhhcccccceEEEecCChHH
Confidence 222211 2578999999953
No 100
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.52 E-value=0.00014 Score=66.32 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=28.8
Q ss_pred CCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCC
Q 015362 108 KPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 154 (408)
Q Consensus 108 ~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~ 154 (408)
..|.+|++||+|+.+. +..+.+.. +..+. ....+++|.||||.
T Consensus 33 ~~d~lvflGD~IDRGp--~S~~vl~~-l~~l~-~~~~~~~l~GNHE~ 75 (222)
T cd07413 33 PERQVVFLGDLIDRGP--EIRELLEI-VKSMV-DAGHALAVMGNHEF 75 (222)
T ss_pred CCCEEEEeCcccCCCC--CHHHHHHH-HHHhh-cCCCEEEEEccCcH
Confidence 4689999999998765 33333332 32222 23479999999996
No 101
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.48 E-value=0.00015 Score=67.59 Aligned_cols=67 Identities=25% Similarity=0.268 Sum_probs=42.6
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHH-HcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIE-AEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
|++.+|+|+|-... .++.+.+.++ ....|.++++||+|+.+.. ..+.+. .+. +
T Consensus 1 m~~YvIGDIHGc~d--------------------aL~~LL~~i~f~~~~D~l~~lGDlVdRGP~--slevL~-~l~---~ 54 (279)
T TIGR00668 1 MATYLIGDLHGCYD--------------------ELQALLERVEFDPGQDTLWLTGDLVARGPG--SLEVLR-YVK---S 54 (279)
T ss_pred CcEEEEEcccCCHH--------------------HHHHHHHHhCcCCCCCEEEEeCCccCCCCC--HHHHHH-HHH---h
Confidence 35789999996432 2344555554 2457999999999987653 333332 222 2
Q ss_pred cCCCEEEEcCCCCC
Q 015362 141 LGLPWAAVLGNHDQ 154 (408)
Q Consensus 141 ~~~p~~~v~GNHD~ 154 (408)
.+..+..|.||||.
T Consensus 55 l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 55 LGDAVRLVLGNHDL 68 (279)
T ss_pred cCCCeEEEEChhHH
Confidence 23346789999996
No 102
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.46 E-value=0.012 Score=54.74 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=43.2
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHH-HHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRF-LKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
|||+++.|+=-... ...++. +.+..++.++|++|..||...++.... ....+ .+.+
T Consensus 1 m~ilfiGDi~G~~G------------------r~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~--~~~~~---~L~~ 57 (266)
T TIGR00282 1 IKFLFIGDVYGKAG------------------RKIVKNNLPQLKSKYQADLVIANGENTTHGKGLT--LKIYE---FLKQ 57 (266)
T ss_pred CeEEEEEecCCHHH------------------HHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC--HHHHH---HHHh
Confidence 68999999952111 122333 333334568999999999875542111 22222 2346
Q ss_pred cCCCEEEEcCCCCCCCC
Q 015362 141 LGLPWAAVLGNHDQEST 157 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~~~ 157 (408)
.++-++.+ |||.+...
T Consensus 58 ~GvDviT~-GNH~~Dkg 73 (266)
T TIGR00282 58 SGVNYITM-GNHTWFQK 73 (266)
T ss_pred cCCCEEEc-cchhccCc
Confidence 68887766 99998654
No 103
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.29 E-value=0.0014 Score=54.72 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=46.4
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChH-HHHHH-HHHHHHcCC-CEEEEcCCcCCCCCcccHHHHHHHHHhhh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLN-TTRFL-KRIIEAEKP-DFIAFTGDNIFGSSTTDVAESMIQAFGPA 138 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~p-D~vv~~GDli~~~~~~~~~~~~~~~l~~~ 138 (408)
-.+-++||+|++.......+. +...+ .-+.+ .+..+-.+| |.+.+.||++........+..+ ++.
T Consensus 4 ~mmyfisDtHfgh~nvi~~~p--------fsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~I---ler- 71 (186)
T COG4186 4 TMMYFISDTHFGHKNVISMRP--------FSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLI---LER- 71 (186)
T ss_pred eEEEEecccccCCcceeecCC--------CCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHH---HHH-
Confidence 357789999999765432111 11111 01122 223333455 7899999988766533233333 332
Q ss_pred HhcCCCEEEEcCCCCCCCCC
Q 015362 139 MELGLPWAAVLGNHDQESTM 158 (408)
Q Consensus 139 ~~~~~p~~~v~GNHD~~~~~ 158 (408)
.+--...|+||||-....
T Consensus 72 --LnGrkhlv~GNhDk~~~~ 89 (186)
T COG4186 72 --LNGRKHLVPGNHDKCHPM 89 (186)
T ss_pred --cCCcEEEeeCCCCCCccc
Confidence 244568899999985443
No 104
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.18 E-value=0.001 Score=61.57 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=53.0
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc-----------CCCEEEEcCCcCCCCCc-------
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE-----------KPDFIAFTGDNIFGSST------- 124 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~pD~vv~~GDli~~~~~------- 124 (408)
+|+++||+|+|..... ...++.+.+.|..+ +...+|++||.++....
T Consensus 1 ~i~~vSgL~ig~~~~~---------------~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~ 65 (257)
T cd07387 1 YIALVSGLGLGGNAES---------------SLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTK 65 (257)
T ss_pred CEEEEcccccCCCccc---------------hHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhh
Confidence 3899999999987421 13446677777632 33479999999975431
Q ss_pred ------------ccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCCC
Q 015362 125 ------------TDVAESMIQAFGPAMELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 125 ------------~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~ 157 (408)
.+.++.+...+.. +...+|+...|||||-...
T Consensus 66 ~~~~~~~~~~~~~~~~~~ld~~l~~-l~~~i~V~imPG~~Dp~~~ 109 (257)
T cd07387 66 ARYLTKKSSAASVEAVKELDNFLSQ-LASSVPVDLMPGEFDPANH 109 (257)
T ss_pred hhccccccchhhHHHHHHHHHHHHh-hhcCCeEEECCCCCCcccc
Confidence 1123445555554 3568999999999998654
No 105
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.00098 Score=65.70 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=53.3
Q ss_pred CCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHH-----cCCCEEEEcCCcCCCCCc---------
Q 015362 59 DGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEA-----EKPDFIAFTGDNIFGSST--------- 124 (408)
Q Consensus 59 ~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~pD~vv~~GDli~~~~~--------- 124 (408)
+.++++++|||+|.|...-.. +....+.+.++. .+...++++||.+++-+.
T Consensus 223 ~e~v~v~~isDih~GSk~F~~---------------~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~ 287 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLE---------------DEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELV 287 (481)
T ss_pred CcceEEEEEeeeecccHHHHH---------------HHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccc
Confidence 357899999999998764210 122344455543 245789999999985432
Q ss_pred ----ccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCC
Q 015362 125 ----TDVAESMIQAFGPAMELGLPWAAVLGNHDQES 156 (408)
Q Consensus 125 ----~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~ 156 (408)
.+.++.+.+.|.. +-..+-++..|||||...
T Consensus 288 i~di~~qy~~~A~~L~~-vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 288 IADIYEQYEELAEFLDQ-VPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred cccchHHHHHHHHHHhh-CCCCceEEEecCCCCccc
Confidence 1234555555543 334677999999999854
No 106
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.65 E-value=0.0032 Score=59.07 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=44.3
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
.++++++|+|-... .+.++.+.+.....+-+++.||+++.+.. ..+.+.-.+.-....
T Consensus 28 ~~i~vvGDiHG~~~--------------------~l~~ll~~~~~~~~~~~vfLGD~VDrG~~--s~e~l~~l~~lk~~~ 85 (271)
T smart00156 28 APVTVCGDIHGQFD--------------------DLLRLFDLNGPPPDTNYVFLGDYVDRGPF--SIEVILLLFALKILY 85 (271)
T ss_pred CCEEEEEeCcCCHH--------------------HHHHHHHHcCCCCCceEEEeCCccCCCCC--hHHHHHHHHHHHhcC
Confidence 46899999995432 12333333333456889999999986643 333333222211233
Q ss_pred CCCEEEEcCCCCCC
Q 015362 142 GLPWAAVLGNHDQE 155 (408)
Q Consensus 142 ~~p~~~v~GNHD~~ 155 (408)
+-.++.+.||||..
T Consensus 86 p~~v~llrGNHE~~ 99 (271)
T smart00156 86 PNRVVLLRGNHESR 99 (271)
T ss_pred CCCEEEEeccccHH
Confidence 55689999999984
No 107
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.53 E-value=0.005 Score=58.77 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=43.6
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
++++++|+|-... .+.++.+.+.....+-+++.||++|.+. ...+.+...+.-.+..+
T Consensus 44 ~i~ViGDIHG~~~--------------------dL~~l~~~~g~~~~~~ylFLGDyVDRG~--~s~Evi~lL~~lki~~p 101 (305)
T cd07416 44 PVTVCGDIHGQFY--------------------DLLKLFEVGGSPANTRYLFLGDYVDRGY--FSIECVLYLWALKILYP 101 (305)
T ss_pred CEEEEEeCCCCHH--------------------HHHHHHHhcCCCCCceEEEECCccCCCC--ChHHHHHHHHHHHhhcC
Confidence 5899999995432 1223334333344589999999998764 33344433332112334
Q ss_pred CCEEEEcCCCCCC
Q 015362 143 LPWAAVLGNHDQE 155 (408)
Q Consensus 143 ~p~~~v~GNHD~~ 155 (408)
.-++.+.||||..
T Consensus 102 ~~v~lLRGNHE~~ 114 (305)
T cd07416 102 KTLFLLRGNHECR 114 (305)
T ss_pred CCEEEEeCCCcHH
Confidence 5689999999974
No 108
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=96.40 E-value=0.014 Score=54.43 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=56.8
Q ss_pred eeeccccccccCCCCCCccccCCCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc--------C
Q 015362 37 LQISHDKIHLKKYPDLPLRFRYDGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE--------K 108 (408)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~ 108 (408)
..+++|++.++++ +...+|+++||+|+.... +++.+.+++... .
T Consensus 12 ~~~~~~~~~~~~~---------~~~~~~VilSDV~LD~p~-------------------tl~~L~kvf~~y~~~~~~~~~ 63 (291)
T PTZ00235 12 KEVEEYEIIVRKN---------DKRHNWIIMHDVYLDSPY-------------------TFEVLDKMLSLYVNTYPENEL 63 (291)
T ss_pred cccceEEEEEecC---------CCceEEEEEEeeccCCHH-------------------HHHHHHHHHHHhhccCcccCC
Confidence 3477888877653 246899999999998653 345555554432 3
Q ss_pred CCEEEEcCCcCCCC-----CcccHHHHHHHHHhhh-------HhcCCCEEEEcCCCCCCC
Q 015362 109 PDFIAFTGDNIFGS-----STTDVAESMIQAFGPA-------MELGLPWAAVLGNHDQES 156 (408)
Q Consensus 109 pD~vv~~GDli~~~-----~~~~~~~~~~~~l~~~-------~~~~~p~~~v~GNHD~~~ 156 (408)
|-.+|+.|+.+... .....+..-.+.|+.+ +....-+++|||-.|-+.
T Consensus 64 P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 64 PVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDPCA 123 (291)
T ss_pred CeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHHHhcCeEEEECCCCCCCc
Confidence 88999999977553 1111122222222221 233566899999999854
No 109
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=96.23 E-value=0.0071 Score=57.38 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=42.5
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
.+++++|+|-... .+..+.+.......+-+|+.||+++.+.. ..+.+.-.+.-....+
T Consensus 51 ~i~viGDIHG~~~--------------------~L~~l~~~~~~~~~~~~lfLGDyVDRG~~--s~e~i~ll~~lk~~~p 108 (293)
T cd07414 51 PLKICGDIHGQYY--------------------DLLRLFEYGGFPPESNYLFLGDYVDRGKQ--SLETICLLLAYKIKYP 108 (293)
T ss_pred ceEEEEecCCCHH--------------------HHHHHHHhcCCCCcceEEEEeeEecCCCC--cHHHHHHHHHhhhhCC
Confidence 4889999995322 12233333333455789999999987643 2333332222112334
Q ss_pred CCEEEEcCCCCCC
Q 015362 143 LPWAAVLGNHDQE 155 (408)
Q Consensus 143 ~p~~~v~GNHD~~ 155 (408)
-.++.+.||||..
T Consensus 109 ~~i~llrGNHE~~ 121 (293)
T cd07414 109 ENFFLLRGNHECA 121 (293)
T ss_pred CcEEEEecccchh
Confidence 4589999999985
No 110
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=96.18 E-value=0.007 Score=57.17 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=42.0
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
.+.+++|+|-... .+..+.+.......+-+|++||++|.+. ...+.+.-.+.-....+
T Consensus 43 ~i~vvGDIHG~~~--------------------dL~~ll~~~~~~~~~~~lfLGDyVDRG~--~s~evl~ll~~lk~~~p 100 (285)
T cd07415 43 PVTVCGDIHGQFY--------------------DLLELFRVGGDPPDTNYLFLGDYVDRGY--YSVETFLLLLALKVRYP 100 (285)
T ss_pred CEEEEEeCCCCHH--------------------HHHHHHHHcCCCCCCeEEEEeEECCCCc--CHHHHHHHHHHHhhcCC
Confidence 4889999995322 1222333332334578999999997764 23333332221112334
Q ss_pred CCEEEEcCCCCCC
Q 015362 143 LPWAAVLGNHDQE 155 (408)
Q Consensus 143 ~p~~~v~GNHD~~ 155 (408)
-.++.+.||||..
T Consensus 101 ~~v~llrGNHE~~ 113 (285)
T cd07415 101 DRITLLRGNHESR 113 (285)
T ss_pred CcEEEEecccchH
Confidence 5699999999974
No 111
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.15 E-value=0.008 Score=57.59 Aligned_cols=70 Identities=19% Similarity=0.133 Sum_probs=42.6
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc--C--CCEEEEcCCcCCCCCcccHHHHHHHHHhh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE--K--PDFIAFTGDNIFGSSTTDVAESMIQAFGP 137 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~--pD~vv~~GDli~~~~~~~~~~~~~~~l~~ 137 (408)
-++++++|+|-... .+.+.++.. . .+..+++||++|.+. ...+.+.-.+.-
T Consensus 51 ~~~~vvGDiHG~~~-----------------------dL~~il~~~g~~~~~~~~lFLGDyVDRG~--~s~Evl~ll~~l 105 (321)
T cd07420 51 KQVTICGDLHGKLD-----------------------DLFLIFYKNGLPSPENPYVFNGDFVDRGK--RSIEILIILFAF 105 (321)
T ss_pred CCeEEEEeCCCCHH-----------------------HHHHHHHHcCCCCccceEEEeccccCCCC--CcHHHHHHHHHH
Confidence 36899999995432 233334332 2 268999999998764 233444333321
Q ss_pred hHhcCCCEEEEcCCCCCCC
Q 015362 138 AMELGLPWAAVLGNHDQES 156 (408)
Q Consensus 138 ~~~~~~p~~~v~GNHD~~~ 156 (408)
....+-.++.+.||||...
T Consensus 106 k~~~p~~v~llRGNHE~~~ 124 (321)
T cd07420 106 FLVYPNEVHLNRGNHEDHI 124 (321)
T ss_pred hhcCCCcEEEecCchhhhh
Confidence 1223445899999999853
No 112
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.12 E-value=0.0087 Score=53.87 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=42.1
Q ss_pred EEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHH----HcCCCEEEEcCCcCCCCCcc----------cHHH
Q 015362 64 ILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIE----AEKPDFIAFTGDNIFGSSTT----------DVAE 129 (408)
Q Consensus 64 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~pD~vv~~GDli~~~~~~----------~~~~ 129 (408)
|+++||+|++.... ..+.+.+.+. +.+|+.+|++|++++..... ....
T Consensus 1 Iv~~Sg~~~~~~~~------------------~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PF04042_consen 1 IVFASGPFLDSDNL------------------SLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEE 62 (209)
T ss_dssp EEEEES--CTTT-H------------------HHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHH
T ss_pred CEEEecCccCCCHh------------------HHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccH
Confidence 78999999985532 2344555554 56799999999998754321 1111
Q ss_pred ----HHHHHHhhhHhcCCCEEEEcCCCCCCCC
Q 015362 130 ----SMIQAFGPAMELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 130 ----~~~~~l~~~~~~~~p~~~v~GNHD~~~~ 157 (408)
.+.+.+.. +...+++..|||+||....
T Consensus 63 ~~~~~~~~~~~~-i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 63 DFLKELDSFLES-ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp HHHHHCHHHHCC-CHCCSEEEEE--TTCTT-S
T ss_pred HHHHHHHHHHhh-cccccEEEEeCCCcccccc
Confidence 12222222 2357899999999998654
No 113
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.96 E-value=0.011 Score=57.56 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=41.7
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCC-CEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKP-DFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p-D~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
-++.+++|+|-... .+..+.+.+.-... +.+|+.||++|.+. ...+.+.-.+.-...
T Consensus 66 ~~i~VvGDIHG~~~--------------------dL~~ll~~~g~~~~~~~ylFLGDyVDRGp--~SlEvl~lL~~lki~ 123 (377)
T cd07418 66 CEVVVVGDVHGQLH--------------------DVLFLLEDAGFPDQNRFYVFNGDYVDRGA--WGLETFLLLLSWKVL 123 (377)
T ss_pred CCEEEEEecCCCHH--------------------HHHHHHHHhCCCCCCceEEEeccccCCCC--ChHHHHHHHHHHhhc
Confidence 46999999995432 12223332221222 45999999997664 333444322221123
Q ss_pred cCCCEEEEcCCCCCC
Q 015362 141 LGLPWAAVLGNHDQE 155 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~ 155 (408)
.+--++.+.||||..
T Consensus 124 ~p~~v~lLRGNHE~~ 138 (377)
T cd07418 124 LPDRVYLLRGNHESK 138 (377)
T ss_pred cCCeEEEEeeecccc
Confidence 345589999999975
No 114
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.95 E-value=0.01 Score=56.77 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=41.8
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
++++++|+|-... .+..+.+.......+-.|+.||+++.+.. ..+.+.-.+.-.+..+
T Consensus 60 ~i~vvGDIHG~~~--------------------dL~~l~~~~g~~~~~~ylfLGDyVDRG~~--s~evl~ll~~lki~~p 117 (320)
T PTZ00480 60 PLKICGDVHGQYF--------------------DLLRLFEYGGYPPESNYLFLGDYVDRGKQ--SLETICLLLAYKIKYP 117 (320)
T ss_pred CeEEEeecccCHH--------------------HHHHHHHhcCCCCcceEEEeceecCCCCC--cHHHHHHHHHhcccCC
Confidence 4889999995322 12223333333345678999999987642 2333332222112234
Q ss_pred CCEEEEcCCCCCC
Q 015362 143 LPWAAVLGNHDQE 155 (408)
Q Consensus 143 ~p~~~v~GNHD~~ 155 (408)
-.++.+.||||..
T Consensus 118 ~~v~llRGNHE~~ 130 (320)
T PTZ00480 118 ENFFLLRGNHECA 130 (320)
T ss_pred CceEEEecccchh
Confidence 4689999999984
No 115
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=95.93 E-value=0.03 Score=51.53 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccc-ccc---CCc--ccccccccccCCCCh-HHHHHHHhcCC
Q 015362 247 LRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQ-LYY---QNI--VGQFQEAVACSRVNS-GVLQTLVSLGD 319 (408)
Q Consensus 247 l~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~-~~~---~~~--~g~~~e~~~~~~~~~-~~l~~l~~~~~ 319 (408)
+-||+..|.... ..++|+++|.|+--..+.. .|. ..+ .|. .+..-.|.... .++..+ +-+|
T Consensus 255 lpwlk~dl~~~a----------adgrpv~LfqhyGwdtfsteawdpAsrT~Dd~Gs-gaphww~a~er~all~~l-qGYN 322 (392)
T COG5555 255 LPWLKVDLIYSA----------ADGRPVYLFQHYGWDTFSTEAWDPASRTLDDTGS-GAPHWWPAPERGALLFFL-QGYN 322 (392)
T ss_pred Ccceeccceeec----------cCCCceeehhhhCccceeccccCchhcccccCCC-CCCCCCCCCCcchHHHhh-cCce
Confidence 459998877654 3689999999994322211 121 111 111 11122233333 344444 4468
Q ss_pred eEEEEeccCCCCC
Q 015362 320 IKAVFVGHDHTND 332 (408)
Q Consensus 320 V~~v~~GH~H~n~ 332 (408)
|...|+||.|...
T Consensus 323 vvg~fhGhkhd~~ 335 (392)
T COG5555 323 VVGTFHGHKHDFN 335 (392)
T ss_pred eEEeccccccccc
Confidence 9999999999853
No 116
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=95.85 E-value=0.42 Score=43.37 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=35.5
Q ss_pred HHcCCCEEEEcCCcCCCCCc------------------ccHHHHHHHH---------HhhhHhcCCCEEEEcCCCCCCCC
Q 015362 105 EAEKPDFIAFTGDNIFGSST------------------TDVAESMIQA---------FGPAMELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 105 ~~~~pD~vv~~GDli~~~~~------------------~~~~~~~~~~---------l~~~~~~~~p~~~v~GNHD~~~~ 157 (408)
.+.+||++|++||.|+.+.. ....+.+.+. ++. +.+.+|++.++-+||+..+
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~-~~~~~p~~~iwDDHDi~~n 104 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQR-LLAQVPTIGIWDDHDIGDN 104 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHH-HhhcCCEEEeccccccccc
Confidence 47899999999999988742 1111111111 222 2457899999999999866
Q ss_pred C
Q 015362 158 M 158 (408)
Q Consensus 158 ~ 158 (408)
.
T Consensus 105 ~ 105 (228)
T cd07389 105 W 105 (228)
T ss_pred c
Confidence 4
No 117
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.79 E-value=0.01 Score=56.33 Aligned_cols=70 Identities=14% Similarity=0.049 Sum_probs=40.7
Q ss_pred EEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCC
Q 015362 64 ILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGL 143 (408)
Q Consensus 64 i~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~ 143 (408)
+.+++|+|-... .+..+.+.+.....+-+++.||+++.+.. ..+.+...+.-.+..+.
T Consensus 54 ~~ViGDIHG~~~--------------------~L~~l~~~~~~~~~~~~lfLGDyVDRG~~--s~evl~ll~~lk~~~p~ 111 (294)
T PTZ00244 54 VRVCGDTHGQYY--------------------DLLRIFEKCGFPPYSNYLFLGDYVDRGKH--SVETITLQFCYKIVYPE 111 (294)
T ss_pred ceeeccCCCCHH--------------------HHHHHHHHcCCCCcccEEEeeeEecCCCC--HHHHHHHHHHHhhccCC
Confidence 778999995432 12223333322344578899999987642 33333322211122355
Q ss_pred CEEEEcCCCCCC
Q 015362 144 PWAAVLGNHDQE 155 (408)
Q Consensus 144 p~~~v~GNHD~~ 155 (408)
.++.+.||||..
T Consensus 112 ~v~llrGNHE~~ 123 (294)
T PTZ00244 112 NFFLLRGNHECA 123 (294)
T ss_pred eEEEEecccchH
Confidence 699999999974
No 118
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=95.65 E-value=0.025 Score=54.20 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=42.1
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHc-CCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAE-KPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
-++.+++|+|-... .+.++.+.+.-. .-|-++++||++|.+. ...+.+...+.-.+.
T Consensus 60 ~~~~VvGDIHG~~~--------------------dL~~ll~~~g~~~~~~~ylFLGDyVDRG~--~S~Evl~ll~~lki~ 117 (316)
T cd07417 60 EKITVCGDTHGQFY--------------------DLLNIFELNGLPSETNPYLFNGDFVDRGS--FSVEVILTLFAFKLL 117 (316)
T ss_pred ceeEEeecccCCHH--------------------HHHHHHHhcCCCCccCeEEEEeeEecCCC--ChHHHHHHHHHhhhc
Confidence 47999999995432 122233322211 2257999999998764 334444433321123
Q ss_pred cCCCEEEEcCCCCCC
Q 015362 141 LGLPWAAVLGNHDQE 155 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~ 155 (408)
.+--++.+.||||..
T Consensus 118 ~p~~v~lLRGNHE~~ 132 (316)
T cd07417 118 YPNHFHLNRGNHETD 132 (316)
T ss_pred cCCceEEEeeccchH
Confidence 345588999999973
No 119
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=95.63 E-value=0.024 Score=48.17 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=32.7
Q ss_pred cCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCC
Q 015362 107 EKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 153 (408)
Q Consensus 107 ~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD 153 (408)
.+.|++++.||+...... ...+.+.+....+.++|+|++-|||+
T Consensus 25 gpFd~~ic~Gdff~~~~~---~~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 25 GPFDALLCVGDFFGDDED---DEELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CCeeEEEEecCccCCccc---hhhHHHHhcCCccCCCCEEEECCCCC
Confidence 578999999997644332 24555555555678999999999997
No 120
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.63 E-value=0.02 Score=54.57 Aligned_cols=71 Identities=15% Similarity=0.068 Sum_probs=41.5
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
.+.+++|+|-... .+..+.+.+.....+-+++.||+++.+. ...+.+...+.-....+
T Consensus 44 ~i~vvGDIHG~~~--------------------~L~~l~~~~~~~~~~~~lfLGDyVDRG~--~s~evl~ll~~lk~~~p 101 (303)
T PTZ00239 44 PVNVCGDIHGQFY--------------------DLQALFKEGGDIPNANYIFIGDFVDRGY--NSVETMEYLLCLKVKYP 101 (303)
T ss_pred CEEEEEeCCCCHH--------------------HHHHHHHhcCCCCCceEEEeeeEcCCCC--CHHHHHHHHHHhhhcCC
Confidence 3888999995432 1222333222234578999999998764 23333333222112224
Q ss_pred CCEEEEcCCCCCC
Q 015362 143 LPWAAVLGNHDQE 155 (408)
Q Consensus 143 ~p~~~v~GNHD~~ 155 (408)
--++.+.||||..
T Consensus 102 ~~v~llrGNHE~~ 114 (303)
T PTZ00239 102 GNITLLRGNHESR 114 (303)
T ss_pred CcEEEEecccchH
Confidence 4589999999974
No 121
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.54 E-value=0.44 Score=43.73 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCcccccccccccCCC-ChHHHHHHHhcCCeEEEE
Q 015362 246 QLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRV-NSGVLQTLVSLGDIKAVF 324 (408)
Q Consensus 246 Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~-~~~~l~~l~~~~~V~~v~ 324 (408)
..+-+++.++++++ ....+|+.+|-..... .. |.. ...+-..+.+. ++++|+
T Consensus 160 ~~~~~~~~i~~lr~----------~~D~vIv~~H~G~e~~------~~----------p~~~~~~la~~l~~~-G~D~Ii 212 (239)
T cd07381 160 DLERIAADIAEAKK----------KADIVIVSLHWGVEYS------YY----------PTPEQRELARALIDA-GADLVI 212 (239)
T ss_pred CHHHHHHHHHHHhh----------cCCEEEEEecCcccCC------CC----------CCHHHHHHHHHHHHC-CCCEEE
Confidence 34556666666652 3566888888533210 00 011 12344455554 499999
Q ss_pred eccCCCCCcccCCCCeEEEEe
Q 015362 325 VGHDHTNDFCGNLNGIWFCYG 345 (408)
Q Consensus 325 ~GH~H~n~~~~~~~gi~~~~~ 345 (408)
.||.|...-+..++|..++|+
T Consensus 213 G~H~Hv~q~~E~~~~~~I~YS 233 (239)
T cd07381 213 GHHPHVLQGIEIYKGKLIFYS 233 (239)
T ss_pred cCCCCcCCCeEEECCEEEEEc
Confidence 999998654445677777765
No 122
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.12 Score=52.50 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEE-E
Q 015362 245 SQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKA-V 323 (408)
Q Consensus 245 ~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~-v 323 (408)
.|.+|-.+.++.. ...-++++.|.|.... ..| .....+....++++.. |
T Consensus 212 ~~~~~~~~m~~~~------------~idlii~lgH~~~~~~-~e~-----------------~~~~~~ir~~~p~t~Iqv 261 (602)
T KOG4419|consen 212 TQSEWEQDMVNTT------------DIDLIIALGHSPVRDD-DEW-----------------KSLHAEIRKVHPNTPIQV 261 (602)
T ss_pred hccchHHHHhhcc------------CccEEEEecccccccc-hhh-----------------hhHHHHHhhhCCCCceEE
Confidence 3566776765442 4667888888887531 111 0123334445678888 9
Q ss_pred EeccCCCCCccc
Q 015362 324 FVGHDHTNDFCG 335 (408)
Q Consensus 324 ~~GH~H~n~~~~ 335 (408)
|-||.|.+++..
T Consensus 262 iGGHshird~a~ 273 (602)
T KOG4419|consen 262 IGGHSHIRDFAV 273 (602)
T ss_pred ECchhhhhhhhh
Confidence 999999988765
No 123
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=95.34 E-value=0.068 Score=51.26 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=26.8
Q ss_pred EEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 111 FIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 111 ~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
-+|+.||++|.+. ...+.+.-.+.-....+.-++.+.||||..
T Consensus 85 ~~vfLGDyVDRGp--~s~evl~ll~~lk~~~p~~v~lLRGNHE~~ 127 (311)
T cd07419 85 DYLFLGDYVDRGS--NSLETICLLLALKVKYPNQIHLIRGNHEDR 127 (311)
T ss_pred eEEEECCccCCCC--ChHHHHHHHHHhhhcCCCcEEEeccccchH
Confidence 4789999997764 333433332221122355689999999974
No 124
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=95.26 E-value=1 Score=41.00 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=48.6
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHH-HHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTT-RFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
|||++|.|+=-.... +.+ +.+-....+.++|||+..|-...++..- ..+.+. .+++
T Consensus 1 mriLfiGDvvGk~Gr------------------~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Gi-t~k~y~----~l~~ 57 (266)
T COG1692 1 MRILFIGDVVGKPGR------------------KAVKEHLPQLKSKYKIDFVIVNGENAAGGFGI-TEKIYK----ELLE 57 (266)
T ss_pred CeEEEEecccCcchH------------------HHHHHHhHHHHHhhcCcEEEEcCccccCCcCC-CHHHHH----HHHH
Confidence 689999998543322 222 3344455568999999999976655421 122232 2356
Q ss_pred cCCCEEEEcCCCCCCCCCCHHHHHHHHHH
Q 015362 141 LGLPWAAVLGNHDQESTMDREELMYFISL 169 (408)
Q Consensus 141 ~~~p~~~v~GNHD~~~~~~~~~~~~~~~~ 169 (408)
+++.++ +.|||-.. +.++.++...
T Consensus 58 ~G~dvi-T~GNH~wd----~~ei~~~i~~ 81 (266)
T COG1692 58 AGADVI-TLGNHTWD----QKEILDFIDN 81 (266)
T ss_pred hCCCEE-eccccccc----chHHHHHhhc
Confidence 688765 78999653 3445555443
No 125
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.19 E-value=0.59 Score=42.98 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEe
Q 015362 309 GVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYG 345 (408)
Q Consensus 309 ~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~ 345 (408)
++-..+.+. +|++|+.||.|...-+..++|..++|+
T Consensus 196 ~~A~~l~~~-G~DvIiG~H~H~~~~~e~~~~~~I~Ys 231 (239)
T smart00854 196 ELAHALIDA-GADVVIGHHPHVLQPIEIYKGKLIAYS 231 (239)
T ss_pred HHHHHHHHc-CCCEEEcCCCCcCCceEEECCEEEEEc
Confidence 455556555 499999999998655455677777665
No 126
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=0.26 Score=41.04 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCCCCCC---CCCCCceEEEEEecCCCCCCccccceeEEE
Q 015362 309 GVLQTLVSLGDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYHGYGK---AGWPRRARIILAEAGKGENGWMEVEMIKTW 385 (408)
Q Consensus 309 ~~l~~l~~~~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~~~~~---~~~~~g~rv~~i~~~~~~~~~~~~~~~~tw 385 (408)
+-+..|.+.=+|+..+.||+|..+. ...+|-.+ ..|+|.-+++.. +...+.+-+++|.. ..+.+|
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~A-ye~eg~ff-vnPGSaTGAfn~~~t~~~~PSFvLmDiqg----------~~~v~Y 164 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEA-YEHEGKFF-VNPGSATGAFNVSDTDIIVPSFVLMDIQG----------STVVTY 164 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEE-EEeCCcEE-eCCCcccCCCcccccCCCCCceEEEEecC----------CEEEEE
Confidence 4555565555799999999998543 33445333 445444444432 23567888888874 346777
Q ss_pred -EEccCCCCCcccc
Q 015362 386 -KRLDDQRLSKIDE 398 (408)
Q Consensus 386 -~r~~~~~~~~~~~ 398 (408)
.|+-+|. +..|+
T Consensus 165 vY~lidge-VkVdk 177 (183)
T KOG3325|consen 165 VYRLIDGE-VKVDK 177 (183)
T ss_pred EeeeeCCc-EEEEE
Confidence 7788877 45554
No 127
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=93.79 E-value=2.4 Score=38.95 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCCCCCHHHHHHHHHHccCCccccC-
Q 015362 100 LKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQESTMDREELMYFISLMDYSVAQVN- 178 (408)
Q Consensus 100 ~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~- 178 (408)
+-+..++.++||||..|....++.... ..... .+.+.++.++ +.|||=+.. .++.+++...+.-+.-.+
T Consensus 19 Lp~L~~~~~~DfVIaNgENaa~G~Git-~~~~~----~L~~~GvDvi-T~GNH~wdk----kei~~~i~~~~~ilRPaN~ 88 (253)
T PF13277_consen 19 LPELKEEYGIDFVIANGENAAGGFGIT-PKIAE----ELFKAGVDVI-TMGNHIWDK----KEIFDFIDKEPRILRPANY 88 (253)
T ss_dssp HHHHGG--G-SEEEEE-TTTTTTSS---HHHHH----HHHHHT-SEE-E--TTTTSS----TTHHHHHHH-SSEE--TTS
T ss_pred HHHHHhhcCCCEEEECCcccCCCCCCC-HHHHH----HHHhcCCCEE-ecCcccccC----cHHHHHHhcCCCcEECCCC
Confidence 334445679999999999876554311 12222 2345688866 789997643 345556555443222111
Q ss_pred CCCCCCcccccCCccccccCccceEEEeeCCCCCCCCCcceeEEEEEeCCCCCCcCCcCcCCCCcHHHHHHHHHHHHHHh
Q 015362 179 PPAEDPSNLAKGGVMEKIDGFGNYDLRVYGPPGSHLANSSILNLFFLDSGDRETVRGVRTYGYIKESQLRWLHRVSEALQ 258 (408)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~g~~~y~~~v~~~~~~~~~~~~~~~~i~LDS~~~~~~~~~~~~g~i~~~Ql~WL~~~L~~~~ 258 (408)
|+ ...|.|+..+...+ ..+-++|--.....+ .+. .-...+++.|++++
T Consensus 89 p~--------------~~pG~G~~i~~~~g-----------~kv~ViNl~Gr~fm~------~~~-~PF~~~d~~l~~l~ 136 (253)
T PF13277_consen 89 PP--------------GTPGRGYRIFEKNG-----------KKVAVINLMGRVFMP------PID-CPFRAADRLLEELK 136 (253)
T ss_dssp -T--------------T-SSBSEEEEEETT-----------EEEEEEEEE--TTS---------S--HHHHHHHHHHH--
T ss_pred CC--------------CCCcCcEEEEEECC-----------EEEEEEECcccccCC------CCC-ChHHHHHHHHHhcc
Confidence 22 35677777776643 234444432111111 122 33566777777764
Q ss_pred hhhcccccccCCCCCeEEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCc
Q 015362 259 GQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDF 333 (408)
Q Consensus 259 ~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~ 333 (408)
.....++|=+|---.+ | ..-+-...+ +.|.+|+-=|+|....
T Consensus 137 ----------~~~~~iiVDFHAEaTS--------------E--------K~A~g~~lD-GrvsaV~GTHTHVqTa 178 (253)
T PF13277_consen 137 ----------EETDIIIVDFHAEATS--------------E--------KQAMGWYLD-GRVSAVVGTHTHVQTA 178 (253)
T ss_dssp -------------SEEEEEEE-S-HH--------------H--------HHHHHHHHB-TTBSEEEEESSSS-BS
T ss_pred ----------ccCCEEEEEeecCcHH--------------H--------HHHHHHHhC-CcEEEEEeCCCCccCc
Confidence 2456778888831110 0 012222333 5699999999998543
No 128
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=90.88 E-value=11 Score=34.67 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccCCCCCeEEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEEE
Q 015362 244 ESQLRWLHRVSEALQGQKQDSNRKVGAQLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAV 323 (408)
Q Consensus 244 ~~Ql~WL~~~L~~~~~~~~~~~~~~~~~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v 323 (408)
..+++.+.+.+++++ .....+||++|--.. + ..... ....++-..+.+.+ +++|
T Consensus 167 ~~~~~~i~~~i~~~r----------~~~D~vIv~~HwG~e-~-----~~~p~---------~~q~~~a~~lidaG-aDiI 220 (250)
T PF09587_consen 167 RPGIERIKEDIREAR----------KKADVVIVSLHWGIE-Y-----ENYPT---------PEQRELARALIDAG-ADII 220 (250)
T ss_pred cchHHHHHHHHHHHh----------cCCCEEEEEeccCCC-C-----CCCCC---------HHHHHHHHHHHHcC-CCEE
Confidence 445678888888876 246778999996321 0 00000 11235666777775 9999
Q ss_pred EeccCCCCCcccCCCCeEEEEe
Q 015362 324 FVGHDHTNDFCGNLNGIWFCYG 345 (408)
Q Consensus 324 ~~GH~H~n~~~~~~~gi~~~~~ 345 (408)
+.+|-|.-.-...++|-.++|+
T Consensus 221 iG~HpHv~q~~E~y~~~~I~YS 242 (250)
T PF09587_consen 221 IGHHPHVIQPVEIYKGKPIFYS 242 (250)
T ss_pred EeCCCCcccceEEECCEEEEEe
Confidence 9999998655555677777665
No 129
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=88.28 E-value=0.76 Score=43.97 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=31.1
Q ss_pred cCCCEEEEcCCcCCCCCc--------ccHHHHHHHH---HhhhHhcCCCEEEEcCCCCCC
Q 015362 107 EKPDFIAFTGDNIFGSST--------TDVAESMIQA---FGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 107 ~~pD~vv~~GDli~~~~~--------~~~~~~~~~~---l~~~~~~~~p~~~v~GNHD~~ 155 (408)
.+.|+++++||+-.-... +..+..+... .+.-..+++|.++|-|||+..
T Consensus 29 tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAs 88 (456)
T KOG2863|consen 29 TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEAS 88 (456)
T ss_pred CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHH
Confidence 388999999995322221 1223333333 333356789999999999863
No 130
>PRK09453 phosphodiesterase; Provisional
Probab=83.95 E-value=1.8 Score=37.90 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=24.2
Q ss_pred CeEEEEeccCCCCCcccCCCCeEEEEeCCcCC
Q 015362 319 DIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGY 350 (408)
Q Consensus 319 ~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~ 350 (408)
+++++++||+|. .+....+|..++..|+.|.
T Consensus 118 ~~d~vi~GHtH~-p~~~~~~~~~~iNpGs~~~ 148 (182)
T PRK09453 118 DGDVLVYGHTHI-PVAEKQGGIILFNPGSVSL 148 (182)
T ss_pred CCCEEEECCCCC-CcceEECCEEEEECCCccc
Confidence 478999999998 4556678888887776664
No 131
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=83.59 E-value=3.6 Score=40.55 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=50.1
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHH---HHcCCCEEEEcCCcCCCCCcccHHHHHHHHHh
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRII---EAEKPDFIAFTGDNIFGSSTTDVAESMIQAFG 136 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~ 136 (408)
..-+||++||+|+.... .++.+.+.+ +...|-+||+.|-.............+.+.+.
T Consensus 281 ~d~~fVfLSdV~LD~~~-------------------vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~ 341 (525)
T KOG3818|consen 281 TDTSFVFLSDVFLDDKK-------------------VMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFR 341 (525)
T ss_pred cCceEEEEehhccccHH-------------------HHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHH
Confidence 35789999999997553 334444444 44678899999997644332233344444444
Q ss_pred hhHh---------cCCCEEEEcCCCCCCCC
Q 015362 137 PAME---------LGLPWAAVLGNHDQEST 157 (408)
Q Consensus 137 ~~~~---------~~~p~~~v~GNHD~~~~ 157 (408)
.+.. .+.-+++|||=.|-+..
T Consensus 342 ~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~ 371 (525)
T KOG3818|consen 342 WLAAQLTCFRKDYEKTQFIFVPGPNDPWVD 371 (525)
T ss_pred HHHhhccccccccccceEEEecCCCCCCcC
Confidence 3211 24568999999998764
No 132
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=82.62 E-value=11 Score=33.43 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCE
Q 015362 97 TRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPW 145 (408)
Q Consensus 97 ~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~ 145 (408)
.+...++.++.+.+.++++||.-.. +.++...+.+ .+.+.++|-
T Consensus 82 i~aA~~ly~~gKV~~LLlSGDN~~~--sYnEp~tM~k---dL~~~GVp~ 125 (235)
T COG2949 82 IDAAIALYKAGKVNYLLLSGDNATV--SYNEPRTMRK---DLIAAGVPA 125 (235)
T ss_pred HHHHHHHHhcCCeeEEEEecCCCcc--cccchHHHHH---HHHHcCCCH
Confidence 3445555667899999999995432 2222333333 345668874
No 133
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=82.35 E-value=1.7 Score=41.87 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=41.3
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCC-EEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPD-FIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD-~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
-|.++.|+|-.... .+ ++....-...|+ -.|++||++|.+.. ..+.+.-.++--...
T Consensus 60 PV~i~GDiHGq~~D-------------------Ll-rlf~~~g~~pp~~~ylFLGDYVDRG~~--slE~i~LL~a~Ki~y 117 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGD-------------------LL-RLFDLLGSFPPDQNYVFLGDYVDRGKQ--SLETICLLFALKIKY 117 (331)
T ss_pred CEEEEccCcCCHHH-------------------HH-HHHHhcCCCCCcccEEEecccccCCcc--ceEEeehhhhhhhhC
Confidence 48889999965331 11 222322212254 48999999987753 222222112111234
Q ss_pred CCCEEEEcCCCCCCC
Q 015362 142 GLPWAAVLGNHDQES 156 (408)
Q Consensus 142 ~~p~~~v~GNHD~~~ 156 (408)
+--++...|||+...
T Consensus 118 p~~~~lLRGNHE~~~ 132 (331)
T KOG0374|consen 118 PENVFLLRGNHECAS 132 (331)
T ss_pred CceEEEecccccccc
Confidence 566999999999864
No 134
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=81.44 E-value=1.6 Score=40.39 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhH
Q 015362 60 GTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAM 139 (408)
Q Consensus 60 ~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~ 139 (408)
+..|++.|||+|--... +. +-..-|+.+++||... -+..++...+.+.+..+
T Consensus 60 ~~~r~VcisdtH~~~~~-----------------------i~---~~p~gDvlihagdfT~-~g~~~ev~~fn~~~gsl- 111 (305)
T KOG3947|consen 60 GYARFVCISDTHELTFD-----------------------IN---DIPDGDVLIHAGDFTN-LGLPEEVIKFNEWLGSL- 111 (305)
T ss_pred CceEEEEecCcccccCc-----------------------cc---cCCCCceEEeccCCcc-ccCHHHHHhhhHHhccC-
Confidence 46899999999954332 11 2345699999999653 33334445555544332
Q ss_pred hcCCCEEEEcCCCCCCCC
Q 015362 140 ELGLPWAAVLGNHDQEST 157 (408)
Q Consensus 140 ~~~~p~~~v~GNHD~~~~ 157 (408)
-... -++|.|||+..-.
T Consensus 112 ph~y-KIVIaGNHELtFd 128 (305)
T KOG3947|consen 112 PHEY-KIVIAGNHELTFD 128 (305)
T ss_pred ccee-eEEEeeccceeec
Confidence 1111 3679999998644
No 135
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=73.46 E-value=4.5 Score=37.10 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=28.6
Q ss_pred HcCCCE-EEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 106 AEKPDF-IAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 106 ~~~pD~-vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
...||. .++.||.++.+.. +.+...-.+.--+..+--+-.++|||+..
T Consensus 83 G~~pdtnylfmGDyvdrGy~--SvetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 83 GLAPDTNYLFMGDYVDRGYY--SVETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred CCCCCcceeeeeeecccccc--hHHHHHHHHHhhccccceeEEecCchHHH
Confidence 456775 7889999977643 22332222221122334588899999974
No 136
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=73.39 E-value=4.1 Score=35.30 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.5
Q ss_pred CeEEEEeccCCCC
Q 015362 319 DIKAVFVGHDHTN 331 (408)
Q Consensus 319 ~V~~v~~GH~H~n 331 (408)
++.++|+||+|..
T Consensus 134 ~~~~~lsGH~H~~ 146 (171)
T cd07384 134 KPVLILSGHDHDQ 146 (171)
T ss_pred CceEEEeCcccCC
Confidence 5899999999983
No 137
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=67.26 E-value=6.7 Score=34.83 Aligned_cols=36 Identities=19% Similarity=0.440 Sum_probs=24.7
Q ss_pred EEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCC
Q 015362 275 LAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTN 331 (408)
Q Consensus 275 iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n 331 (408)
|+++|.|+..... ......+.+. .+.++|+||.|..
T Consensus 112 i~lsH~P~~~~~~--------------------~~~~~~~~~~-~p~~Ifs~H~H~s 147 (195)
T cd08166 112 IMLSHVPLLAEGG--------------------QALKHVVTDL-DPDLIFSAHRHKS 147 (195)
T ss_pred eeeeccccccccc--------------------HHHHHHHHhc-CceEEEEcCccce
Confidence 9999999975211 1123334444 5999999999984
No 138
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=66.89 E-value=9.9 Score=38.20 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=33.3
Q ss_pred HHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 101 KRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 101 ~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
.+.|.+.+||+|+++|= +|++. .+......+.+.. ...++|++ +.||-+..
T Consensus 113 l~~I~~~~PDIILLaGG-tDGG~-~e~~l~NA~~La~-~~~~~pII-yAGN~~a~ 163 (463)
T TIGR01319 113 IEAIEESNLDIILFAGG-TDGGE-EECGIHNAKMLAE-HGLDCAII-VAGNKDIQ 163 (463)
T ss_pred HHHHhhcCCCEEEEeCC-cCCCc-hHHHHHHHHHHHh-cCCCCcEE-EeCCHHHH
Confidence 34556689999999999 76664 3333444445544 35578855 55998764
No 139
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=65.30 E-value=4.9 Score=35.58 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=11.3
Q ss_pred CeEEEEeccCCCC
Q 015362 319 DIKAVFVGHDHTN 331 (408)
Q Consensus 319 ~V~~v~~GH~H~n 331 (408)
+++++||||+|..
T Consensus 144 ~~dl~lSGHtHgG 156 (193)
T cd08164 144 KPGLILTGHDHEG 156 (193)
T ss_pred CCCEEEeCccCCC
Confidence 4799999999983
No 140
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=64.16 E-value=8.6 Score=35.11 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=27.7
Q ss_pred CEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc--CCCEEEEcCCCCCCC
Q 015362 110 DFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL--GLPWAAVLGNHDQES 156 (408)
Q Consensus 110 D~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~--~~p~~~v~GNHD~~~ 156 (408)
.--++.||++|.+. .+.+.+.-.+. ++. +-.+..+.|||+...
T Consensus 71 t~YLFLGDyVDRG~--~SvEt~lLLl~--lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 71 TNYLFLGDYVDRGY--YSVETFLLLLA--LKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred CceEeecchhcccc--chHHHHHHHHH--HhhcCcceeEEeeccchhhh
Confidence 34789999998764 33444443322 333 444888999999853
No 141
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=62.64 E-value=9.5 Score=32.36 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=28.7
Q ss_pred CCCeEEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCCCCcccCC
Q 015362 271 QLPGLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHTNDFCGNL 337 (408)
Q Consensus 271 ~~~~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~n~~~~~~ 337 (408)
+...++++|+|........ ..+++-.. ..++.+.++||.|. .++...
T Consensus 107 dg~~~~LsHyP~~~~~~~~----------------~~~r~~y~---~~~~~llIHGH~H~-~~~kp~ 153 (186)
T COG4186 107 DGEDVYLSHYPRPGQDHPG----------------MESRFDYL---RLRVPLLIHGHLHS-QFPKPG 153 (186)
T ss_pred CCeEEEEEeCCCCCCCCcc----------------hhhhHHHH---hccCCeEEeccccc-cccCCC
Confidence 4568999999987532211 11222222 23589999999998 455543
No 142
>PF13941 MutL: MutL protein
Probab=57.47 E-value=20 Score=36.24 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=32.2
Q ss_pred HHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 102 RIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 102 ~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
+.|.+.+||+|+++|= +|++. .+......+.+.. ....+|++ +.||-+..
T Consensus 118 ~~i~~~~PDiILLaGG-tDgG~-~~~il~nA~~La~-~~~~~pVI-yAGN~~a~ 167 (457)
T PF13941_consen 118 EEIREIRPDIILLAGG-TDGGN-KEVILHNAEMLAE-ANLRIPVI-YAGNKAAQ 167 (457)
T ss_pred HHHhccCCCEEEEeCC-ccCCc-hHHHHHHHHHHHh-CCCCCcEE-EECCHHHH
Confidence 4567889999999999 66654 3333333344443 24567755 56998764
No 143
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=57.19 E-value=27 Score=33.99 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCC
Q 015362 97 TRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGN 151 (408)
Q Consensus 97 ~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GN 151 (408)
+..+.+.+.+.+||+|++.||- .+.+.-++.. ...++|+..+-|=
T Consensus 56 ~~~~~~~~~~~~Pd~Vlv~GD~---------~~~la~alaA-~~~~ipv~HieaG 100 (346)
T PF02350_consen 56 IIELADVLEREKPDAVLVLGDR---------NEALAAALAA-FYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHT-SEEEEETTS---------HHHHHHHHHH-HHTT-EEEEES--
T ss_pred HHHHHHHHHhcCCCEEEEEcCC---------chHHHHHHHH-HHhCCCEEEecCC
Confidence 4556677788999999999993 2334433333 3568999887653
No 144
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=56.89 E-value=19 Score=33.13 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=29.1
Q ss_pred CCCCeEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcC
Q 015362 58 YDGTFKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNI 119 (408)
Q Consensus 58 ~~~~~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli 119 (408)
++++.+|+|.||++--... ...+.+.+.+||++++.|=..
T Consensus 173 ~dg~~~i~faSDvqGp~~~----------------------~~l~~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 173 TDGKSSIVFASDVQGPIND----------------------EALEFILEKRPDVLIIGGPPT 212 (304)
T ss_pred ecCCeEEEEcccccCCCcc----------------------HHHHHHHhcCCCEEEecCCch
Confidence 4678899999999843221 233455566999999999976
No 145
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=55.88 E-value=12 Score=33.81 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=19.3
Q ss_pred CeEEEEeccCCCCCcccCCCCeEEEEeCCcCCC
Q 015362 319 DIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYH 351 (408)
Q Consensus 319 ~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~ 351 (408)
+++.|+|||+|.. .....++. ++..+++.++
T Consensus 179 ~~~~vv~GHTh~~-~~~~~~~~-i~IDtGs~~g 209 (218)
T PRK09968 179 GADYFIFGHMMFD-NIQTFANQ-IYIDTGSPKS 209 (218)
T ss_pred CCCEEEECCCCcC-cceeECCE-EEEECCCCCC
Confidence 4689999999984 44444554 3344444554
No 146
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=55.76 E-value=49 Score=28.04 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCCEEEEcC---CcCCCCCcccHHHHHHHHHhhhHhc--CCCEEEE
Q 015362 98 RFLKRIIEAEKPDFIAFTG---DNIFGSSTTDVAESMIQAFGPAMEL--GLPWAAV 148 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~G---Dli~~~~~~~~~~~~~~~l~~~~~~--~~p~~~v 148 (408)
+++.+.+...+||+|++.. |+..........+.+.+.++.+.+. +.+++++
T Consensus 40 ~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 40 HYFDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHHHhhhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 4444555557999988855 6543322222334455555544332 4566654
No 147
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=54.05 E-value=17 Score=32.68 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=27.5
Q ss_pred cCCCE-EEEcCCcCCCCCcccHHHHHHHHHhhhHhcCC--CEEEEcCCCCCC
Q 015362 107 EKPDF-IAFTGDNIFGSSTTDVAESMIQAFGPAMELGL--PWAAVLGNHDQE 155 (408)
Q Consensus 107 ~~pD~-vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~--p~~~v~GNHD~~ 155 (408)
.=||- -|+.||++|.+-- +.+.+.-.+. ++++. .+-.+.|||+..
T Consensus 70 ~vP~tnYiFmGDfVDRGyy--SLEtfT~l~~--LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 70 QVPDTNYIFMGDFVDRGYY--SLETFTLLLL--LKARYPAKITLLRGNHESR 117 (306)
T ss_pred CCCCcceEEeccccccccc--cHHHHHHHHH--HhhcCCceeEEeeccchhh
Confidence 34553 6889999976642 2334433322 34444 478899999975
No 148
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=53.45 E-value=36 Score=33.40 Aligned_cols=47 Identities=28% Similarity=0.458 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEE-cCCC
Q 015362 96 TTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAV-LGNH 152 (408)
Q Consensus 96 ~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v-~GNH 152 (408)
.+..+.+++.+.+||+|++-||-. . .+.-++.. ...++|+..| .|+-
T Consensus 80 ~i~~~~~vl~~~kPD~VlVhGDT~-t--------~lA~alaa-~~~~IpV~HvEAGlR 127 (383)
T COG0381 80 IIEGLSKVLEEEKPDLVLVHGDTN-T--------TLAGALAA-FYLKIPVGHVEAGLR 127 (383)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcc-h--------HHHHHHHH-HHhCCceEEEecccc
Confidence 456677888899999999999932 1 22212222 2447898765 4554
No 149
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=51.35 E-value=16 Score=38.06 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCC
Q 015362 98 RFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 156 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~ 156 (408)
..+...|+..-.|-+-+.||+.|.++.++ .+.+.|.. ---|=.-+||||.-+
T Consensus 174 ~al~~lIqrL~VDhLHIvGDIyDRGp~pd---~ImD~Lm~----~hsvDIQWGNHDIlW 225 (640)
T PF06874_consen 174 IALSELIQRLAVDHLHIVGDIYDRGPRPD---KIMDRLMN----YHSVDIQWGNHDILW 225 (640)
T ss_pred HHHHHHHHHHhhhheeecccccCCCCChh---HHHHHHhc----CCCccccccchHHHH
Confidence 44556777788999999999777665443 23222211 223556789999853
No 150
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.41 E-value=29 Score=34.67 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=41.2
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcC-CCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEK-PDFIAFTGDNIFGSSTTDVAESMIQAFGPAME 140 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~ 140 (408)
.||+++.|.--... ..++++.++-++.. .|++++.|+++.++.. ..++.+.......
T Consensus 6 ~kILv~Gd~~Gr~~-------------------eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~---~~e~~~ykng~~~ 63 (528)
T KOG2476|consen 6 AKILVCGDVEGRFD-------------------ELIKRIQKVNKKSGPFDLLICVGNFFGHDTQ---NAEVEKYKNGTKK 63 (528)
T ss_pred ceEEEEcCccccHH-------------------HHHHHHHHHhhcCCCceEEEEecccCCCccc---hhHHHHHhcCCcc
Confidence 68888888742111 23455555544444 7999999997754332 2333333333346
Q ss_pred cCCCEEEEcCCC
Q 015362 141 LGLPWAAVLGNH 152 (408)
Q Consensus 141 ~~~p~~~v~GNH 152 (408)
.++|+|+.-+|-
T Consensus 64 vPiptY~~g~~~ 75 (528)
T KOG2476|consen 64 VPIPTYFLGDNA 75 (528)
T ss_pred CceeEEEecCCC
Confidence 689999877664
No 151
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=49.66 E-value=13 Score=34.05 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCeEEEEeccCCCC
Q 015362 309 GVLQTLVSLGDIKAVFVGHDHTN 331 (408)
Q Consensus 309 ~~l~~l~~~~~V~~v~~GH~H~n 331 (408)
.+.+.+.++ +++.++|||+|..
T Consensus 178 ~~~~~~~~~-~~~~~i~GH~H~~ 199 (241)
T PRK05340 178 AVAALMEKH-GVDTLIHGHTHRP 199 (241)
T ss_pred HHHHHHHHh-CCCEEEECcccCc
Confidence 455556665 6999999999985
No 152
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=45.85 E-value=22 Score=33.26 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEcCC
Q 015362 92 SDLNTTRFLKRIIEAEKPDFIAFTGD 117 (408)
Q Consensus 92 ~~~~~~~~~~~~i~~~~pD~vv~~GD 117 (408)
.+.+.-+.+.+.+.+.+||++|+||-
T Consensus 138 ~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 138 PEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 44455578889999999999999996
No 153
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=45.09 E-value=18 Score=29.80 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=3.3
Q ss_pred hhHHHHHH
Q 015362 11 NWKHSLLY 18 (408)
Q Consensus 11 ~~~~~~~~ 18 (408)
||.+.+++
T Consensus 1 RW~l~~ii 8 (130)
T PF12273_consen 1 RWVLFAII 8 (130)
T ss_pred CeeeHHHH
Confidence 34444443
No 154
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=43.43 E-value=22 Score=33.06 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEcCC
Q 015362 93 DLNTTRFLKRIIEAEKPDFIAFTGD 117 (408)
Q Consensus 93 ~~~~~~~~~~~i~~~~pD~vv~~GD 117 (408)
+.+.-+.+...+.+.+||++|+||-
T Consensus 138 E~eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 138 EKEMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred chhchHHHHHHHHHhCCCEEEEeCc
Confidence 3344577888999999999999996
No 155
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=43.27 E-value=41 Score=30.99 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=27.1
Q ss_pred EEEEcCCcCCCCCc----ccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 111 FIAFTGDNIFGSST----TDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 111 ~vv~~GDli~~~~~----~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
-++++||.+...+. ......+.+.++.+.+.+....+++| |++.
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~~ 167 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEYT 167 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCch
Confidence 48999998755421 12244555566655545555677888 8863
No 156
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=40.82 E-value=73 Score=31.21 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEE-EEcCCCCC
Q 015362 97 TRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWA-AVLGNHDQ 154 (408)
Q Consensus 97 ~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~-~v~GNHD~ 154 (408)
+..+.+.+.+.+||+|+..||-. ..+...+.. ...++|+. +--|++-.
T Consensus 82 ~~~~~~~~~~~~Pd~vlv~GD~~---------~~la~alaA-~~~~IPv~HveaG~rs~ 130 (365)
T TIGR03568 82 IIGFSDAFERLKPDLVVVLGDRF---------EMLAAAIAA-ALLNIPIAHIHGGEVTE 130 (365)
T ss_pred HHHHHHHHHHhCCCEEEEeCCch---------HHHHHHHHH-HHhCCcEEEEECCccCC
Confidence 45677788889999999999932 222222222 34589998 45566644
No 157
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=39.70 E-value=49 Score=27.98 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhH--hcCCCEEEEcCCCCC
Q 015362 96 TTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAM--ELGLPWAAVLGNHDQ 154 (408)
Q Consensus 96 ~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~--~~~~p~~~v~GNHD~ 154 (408)
..+.+.+.|...+||+|++.|.- .......+.+.+.+..+. ....|+-++..|-+.
T Consensus 51 ~~~~l~~~i~~~kP~vI~v~g~~---~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~ 108 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAVGGNS---RESRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEV 108 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE--SS---THHHHHHHHHHHHHHHTTB-TTS-B--EEE---TT
T ss_pred HHHHHHHHHHHcCCeEEEEcCCC---hhHHHHHHHHHHHHHHhhhcccCCCceEEEECcHH
Confidence 44678888999999999998862 122223344444444321 011234445666544
No 158
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=39.53 E-value=83 Score=19.50 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=15.1
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHH
Q 015362 1 MKMESISAKWNWKHSLLYITLIYAIIFF 28 (408)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (408)
|+.++.+++.+....++.+.+++.++..
T Consensus 1 ~~kkkKS~fekiT~v~v~lM~i~tvg~v 28 (35)
T PF13253_consen 1 NKKKKKSTFEKITMVVVWLMLILTVGSV 28 (35)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555555555544433
No 159
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=39.24 E-value=69 Score=28.95 Aligned_cols=44 Identities=25% Similarity=0.276 Sum_probs=26.4
Q ss_pred cCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCC
Q 015362 107 EKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGN 151 (408)
Q Consensus 107 ~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GN 151 (408)
...|+++++|| .........++.-.+.++-....+.+.++++|-
T Consensus 82 ~~~Dliil~Gd-~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGG 125 (258)
T COG2047 82 GERDLIILVGD-TQATSSEGQYELTGKILDIAKEFGARMIYTLGG 125 (258)
T ss_pred CCCcEEEEecc-ccccCcchhHHHHHHHHHHHHHcCCcEEEEecC
Confidence 46799999999 434333333443334443334557788888774
No 160
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=36.92 E-value=43 Score=28.34 Aligned_cols=51 Identities=12% Similarity=0.015 Sum_probs=27.5
Q ss_pred eEEEecCCCCCccccccCCcccccccccccCCCChHHHHHHHhcCCeEEEEeccCCC
Q 015362 274 GLAFFHIPIPETPQLYYQNIVGQFQEAVACSRVNSGVLQTLVSLGDIKAVFVGHDHT 330 (408)
Q Consensus 274 ~iv~~HhPl~~~~~~~~~~~~g~~~e~~~~~~~~~~~l~~l~~~~~V~~v~~GH~H~ 330 (408)
-|+++|.||........... +. ......+..++.|.+.-+-++.||||.|.
T Consensus 71 DILlTh~wP~gi~~~~~~~~-----~~-~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 71 DILLTSEWPKGISKLSKVPF-----EE-TLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred CEEECCCCchhhhhhCCCcc-----cc-cccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 59999999976532111000 00 00012334444444333479999999996
No 161
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=34.90 E-value=58 Score=30.04 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=26.9
Q ss_pred EEEcCCcCCCCCc----ccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 112 IAFTGDNIFGSST----TDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 112 vv~~GDli~~~~~----~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
++++||.+...+. ......+.+.++.+.+.+..+.+.+| |++.
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcCCCCEEEECC-CCCh
Confidence 6999997755431 12245555666655555556677788 9875
No 162
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=33.65 E-value=41 Score=29.89 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=16.8
Q ss_pred CeEEEEeccCCCCCcccCCCCeEEEEeC
Q 015362 319 DIKAVFVGHDHTNDFCGNLNGIWFCYGG 346 (408)
Q Consensus 319 ~V~~v~~GH~H~n~~~~~~~gi~~~~~~ 346 (408)
+.+.+++||+|.. .....++...+.+|
T Consensus 168 ~~~~iV~GHTh~~-~~~~~~~~i~ID~G 194 (207)
T cd07424 168 GVDAVVHGHTPVK-RPLRLGNVLYIDTG 194 (207)
T ss_pred CCCEEEECCCCCC-cceEECCEEEEECC
Confidence 3578999999984 44444554444333
No 163
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=33.07 E-value=1.3e+02 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=25.1
Q ss_pred EEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcC
Q 015362 111 FIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLG 150 (408)
Q Consensus 111 ~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~G 150 (408)
.=+++||.. .|..+.+.++.+.+.++|+..|||
T Consensus 79 vRLhSGDps-------iYgA~~EQm~~L~~~gI~yevvPG 111 (254)
T COG2875 79 VRLHSGDPS-------IYGALAEQMRELEALGIPYEVVPG 111 (254)
T ss_pred EEeecCChh-------HHHHHHHHHHHHHHcCCCeEEeCC
Confidence 347999942 355666667777788999999999
No 164
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=33.03 E-value=1.7e+02 Score=27.10 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=44.8
Q ss_pred EEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcC
Q 015362 63 KILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELG 142 (408)
Q Consensus 63 ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~ 142 (408)
.+.+++|+|.-...... +....+.+...+....+|.|++||.-. +... ..+.+.+.-+ ..+
T Consensus 140 ~v~ilaDV~~kh~~~l~-------------~~~~~~~~~~a~~~~~aDaviVtG~~T-G~~~--~~~~l~~vr~---~~~ 200 (254)
T PF03437_consen 140 DVKILADVHVKHSSPLA-------------TRDLEEAAKDAVERGGADAVIVTGKAT-GEPP--DPEKLKRVRE---AVP 200 (254)
T ss_pred CeEEEeeechhhcccCC-------------CCCHHHHHHHHHHhcCCCEEEECCccc-CCCC--CHHHHHHHHh---cCC
Confidence 38888999987654321 112223455555677999999999943 3321 2233333221 224
Q ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHH
Q 015362 143 LPWAAVLGNHDQESTMDREELMYFIS 168 (408)
Q Consensus 143 ~p~~~v~GNHD~~~~~~~~~~~~~~~ 168 (408)
.|++.--| .+.+.+.+++.
T Consensus 201 ~PVlvGSG-------vt~~Ni~~~l~ 219 (254)
T PF03437_consen 201 VPVLVGSG-------VTPENIAEYLS 219 (254)
T ss_pred CCEEEecC-------CCHHHHHHHHH
Confidence 88885443 45555555543
No 165
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=30.72 E-value=2e+02 Score=25.70 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHh-cCCCEEEEcCCCCCC
Q 015362 98 RFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAME-LGLPWAAVLGNHDQE 155 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~-~~~p~~~v~GNHD~~ 155 (408)
+.+...+.+...|.|+++|=. +- + .+.+.+.++.+.+ .++|++.-|||++.-
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~--gv-t---~~~~~~~v~~ik~~~~lPvilfp~~~~~i 66 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSL--GI-V---ESNLDQTVKKIKKITNLPVILFPGNVNGL 66 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcC--CC-C---HHHHHHHHHHHHhhcCCCEEEECCCcccc
Confidence 345556667789999999973 11 1 1333333333333 579999999999864
No 166
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=30.59 E-value=1.7e+02 Score=24.84 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCCCEEEEcC
Q 015362 98 RFLKRIIEAEKPDFIAFTG 116 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~G 116 (408)
+++.+.+...+||.|++..
T Consensus 49 ~~l~~~~~~~~~d~v~i~~ 67 (183)
T cd04501 49 VRFYEDVIALKPAVVIIMG 67 (183)
T ss_pred HHHHHHHHhcCCCEEEEEe
Confidence 3344444445677655443
No 167
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.45 E-value=1.2e+02 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=17.7
Q ss_pred CCeEEEEeccCCCCCcccCCCCeEEEEeCCc
Q 015362 318 GDIKAVFVGHDHTNDFCGNLNGIWFCYGGGI 348 (408)
Q Consensus 318 ~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~s 348 (408)
+..+.|.-||.|.-.. ....-.+.|+|+.
T Consensus 212 ~~~dYvALGHiH~~q~--~~~~~~i~YsGSp 240 (253)
T TIGR00619 212 PEADYVALGHHHIHKI--SKGRERVRYSGSP 240 (253)
T ss_pred Cccchhhccccccccc--cCCCCCEEECCCC
Confidence 3467788899998322 1122356677665
No 168
>PRK10380 hypothetical protein; Provisional
Probab=28.92 E-value=1e+02 Score=21.31 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=20.1
Q ss_pred CCCCCceEEEEEecCCCCCCccccceeEEEEEccC
Q 015362 356 AGWPRRARIILAEAGKGENGWMEVEMIKTWKRLDD 390 (408)
Q Consensus 356 ~~~~~g~rv~~i~~~~~~~~~~~~~~~~tw~r~~~ 390 (408)
++++|.+||+.++-.+ .+...||..|-.
T Consensus 5 PpYPReA~iV~vekG~-------~g~~vtwyelRa 32 (63)
T PRK10380 5 PPYPREAYIVTIEKGK-------PGQTVTWYQLRA 32 (63)
T ss_pred CCCCcceEEEEeecCC-------CCceEEEEEeec
Confidence 4678999999998433 256778866533
No 169
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=82 Score=26.53 Aligned_cols=32 Identities=6% Similarity=-0.109 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhcee
Q 015362 7 SAKWNWKHSLLYITLIYAIIFFVDKQILQKLQ 38 (408)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (408)
++++|++.++++++++.+++.+.-..+..++.
T Consensus 4 r~r~Rl~~il~~~a~l~~a~~l~Lyal~~ni~ 35 (153)
T COG2332 4 RRRKRLWIILAGLAGLALAVGLVLYALRSNID 35 (153)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccCce
Confidence 34566666666655555544433333335544
No 170
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=27.90 E-value=2e+02 Score=22.27 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHH-HHHHhhhHhcCCCEEEEc
Q 015362 97 TRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESM-IQAFGPAMELGLPWAAVL 149 (408)
Q Consensus 97 ~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~-~~~l~~~~~~~~p~~~v~ 149 (408)
.+.+.+.+++.++|+||++---..... .-..... .+++ ...++|+.+|+
T Consensus 91 ~~~i~~~~~~~~~dliv~G~~~~~~~~-~~~~gs~~~~l~---~~~~~pVlvv~ 140 (140)
T PF00582_consen 91 ADAIIEFAEEHNADLIVMGSRGRSGLE-RLLFGSVAEKLL---RHAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHHHHTTCSEEEEESSSTTSTT-TSSSHHHHHHHH---HHTSSEEEEEE
T ss_pred chhhhhccccccceeEEEeccCCCCcc-CCCcCCHHHHHH---HcCCCCEEEeC
Confidence 356777788889999988876311111 1111112 2222 35678888875
No 171
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=27.59 E-value=70 Score=28.73 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=28.4
Q ss_pred CCCEEEEcCCcCCCCCcccHHHHHHHHHhhhH-hcCCCEEEEcCCCCCCCC-CCHHHHHHHHH
Q 015362 108 KPDFIAFTGDNIFGSSTTDVAESMIQAFGPAM-ELGLPWAAVLGNHDQEST-MDREELMYFIS 168 (408)
Q Consensus 108 ~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~-~~~~p~~~v~GNHD~~~~-~~~~~~~~~~~ 168 (408)
...-+.+.|| |.+. +..+.+.++.+. +...-.+++.| |+-.. ....++.++..
T Consensus 15 ~~~ri~vigD-IHG~-----~~~L~~lL~~i~~~~~~D~li~lG--DlvDrGp~s~~vl~~l~ 69 (218)
T PRK11439 15 QWRHIWLVGD-IHGC-----FEQLMRKLRHCRFDPWRDLLISVG--DLIDRGPQSLRCLQLLE 69 (218)
T ss_pred CCCeEEEEEc-ccCC-----HHHHHHHHHhcCCCcccCEEEEcC--cccCCCcCHHHHHHHHH
Confidence 3346899999 5443 345555555432 11355788889 55322 22334455443
No 172
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=27.34 E-value=2e+02 Score=26.27 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhH-hcCCCEEEEcCCCCC
Q 015362 99 FLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAM-ELGLPWAAVLGNHDQ 154 (408)
Q Consensus 99 ~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~-~~~~p~~~v~GNHD~ 154 (408)
.+.+.+..-.-|+|+++|=. +-. .+.+.+.+..+. ..++|++.-||||+.
T Consensus 32 ei~~~~~~~GTDaImIGGS~--gvt----~~~~~~~v~~ik~~~~lPvilfP~~~~~ 82 (240)
T COG1646 32 EIAEAAAEAGTDAIMIGGSD--GVT----EENVDNVVEAIKERTDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHHHcCCCEEEECCcc--ccc----HHHHHHHHHHHHhhcCCCEEEecCChhc
Confidence 45566666789999999973 211 234444444444 668999999999975
No 173
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=27.28 E-value=36 Score=33.86 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=27.5
Q ss_pred EEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 112 IAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 112 vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
-|+.||++|.+.. ..+.+.-.+.-.+-.+..++.-.|||+..
T Consensus 196 YvFNGDFVDRGk~--siEvLmiL~a~~lv~P~~~~LNRGNHED~ 237 (631)
T KOG0377|consen 196 YVFNGDFVDRGKR--SIEVLMILFALYLVYPNAVHLNRGNHEDH 237 (631)
T ss_pred eeecCchhhcccc--chhhHHHHHHHHhcCchhhhccCCchHHH
Confidence 5789998887653 33444433333344566788999999864
No 174
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=27.19 E-value=2.2e+02 Score=23.80 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCEEEEcCC---cCCCCCcccHHHHHHHHHhhhHhcCCCEEEE
Q 015362 98 RFLKRIIEAEKPDFIAFTGD---NIFGSSTTDVAESMIQAFGPAMELGLPWAAV 148 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~GD---li~~~~~~~~~~~~~~~l~~~~~~~~p~~~v 148 (408)
.++.+.+...+||+|++..= ........+....+.+.++.+.+.+.+++++
T Consensus 54 ~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 54 ARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 44555555567777665332 1111111122334444444444445555554
No 175
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=26.61 E-value=77 Score=28.28 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=13.9
Q ss_pred HHhcCCeEEEEeccCCCCC
Q 015362 314 LVSLGDIKAVFVGHDHTND 332 (408)
Q Consensus 314 l~~~~~V~~v~~GH~H~n~ 332 (408)
+.+..+.+.+++||+|...
T Consensus 162 ~l~~~~~~~iv~GHTh~~~ 180 (208)
T cd07425 162 VLERLGAKRMVVGHTPQEG 180 (208)
T ss_pred HHHHcCCCeEEEcCeeeec
Confidence 3333458999999999843
No 176
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.18 E-value=55 Score=29.57 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 015362 11 NWKHSLLYITLIYAIIFF 28 (408)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (408)
++..+++.+++|+++++.
T Consensus 14 ~iLNiaI~IV~lLIiiva 31 (217)
T PF07423_consen 14 KILNIAIGIVSLLIIIVA 31 (217)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 333344444433333333
No 177
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=26.10 E-value=87 Score=28.21 Aligned_cols=6 Identities=50% Similarity=0.578 Sum_probs=3.6
Q ss_pred Ccccch
Q 015362 1 MKMESI 6 (408)
Q Consensus 1 ~~~~~~ 6 (408)
|+|++.
T Consensus 1 ~~~~~~ 6 (226)
T TIGR01006 1 MKQENT 6 (226)
T ss_pred CCcccc
Confidence 566655
No 178
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=25.53 E-value=67 Score=31.15 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=24.7
Q ss_pred EEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCC
Q 015362 111 FIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 156 (408)
Q Consensus 111 ~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~ 156 (408)
--++.||++|.+.-. .+-+.-..+--+..+.-.+...|||+...
T Consensus 117 ~YLFLGDYVDRGyFS--iECvlYLwsLKi~yp~tl~lLRGNHECrH 160 (517)
T KOG0375|consen 117 RYLFLGDYVDRGYFS--IECVLYLWSLKINYPKTLFLLRGNHECRH 160 (517)
T ss_pred eeEeeccccccceee--eehHHHHHHHhcCCCCeEEEecCCcchhh
Confidence 468999999776421 11121111100223444788999999864
No 179
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.12 E-value=1.1e+02 Score=25.91 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 015362 9 KWNWKHSLLYITLIYAIIF 27 (408)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (408)
++|++.++++++++.++.+
T Consensus 6 ~~rl~~~~~~~~~~~~~~~ 24 (148)
T PRK13254 6 RRRLLIILGALAALGLAVA 24 (148)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 180
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=24.28 E-value=1e+02 Score=31.09 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCCC
Q 015362 100 LKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQES 156 (408)
Q Consensus 100 ~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~~ 156 (408)
+...|+..-.|.+=+.||+.|.++-++ .+.+.+... -.+=.-+||||.-+
T Consensus 182 la~~iqrLvVDhLHiVGDIyDRGP~pd---~Imd~L~~y----hsvDiQWGNHDilW 231 (648)
T COG3855 182 LAYLIQRLVVDHLHIVGDIYDRGPYPD---KIMDTLINY----HSVDIQWGNHDILW 231 (648)
T ss_pred HHHHHHHHhhhheeeecccccCCCCch---HHHHHHhhc----ccccccccCcceEE
Confidence 344556678899999999766554333 232222211 12344689999854
No 181
>PLN02398 hydroxyacylglutathione hydrolase
Probab=24.04 E-value=1.3e+02 Score=29.10 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=23.0
Q ss_pred EEEcCCcCCCCCc----ccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 112 IAFTGDNIFGSST----TDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 112 vv~~GDli~~~~~----~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
++++||.+...+. ....+.+.+.++.+.+.+....+.+| |++.
T Consensus 201 vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~VypG-Hgyt 247 (329)
T PLN02398 201 AIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYCG-HEYT 247 (329)
T ss_pred EEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCCh
Confidence 6788887765421 11234455555554444444445566 7763
No 182
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=23.98 E-value=52 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=19.4
Q ss_pred eEEEEeccCCCCCcccCCCCeEEEEeCC
Q 015362 320 IKAVFVGHDHTNDFCGNLNGIWFCYGGG 347 (408)
Q Consensus 320 V~~v~~GH~H~n~~~~~~~gi~~~~~~~ 347 (408)
-+++|+||.|.. ....++|..++..|+
T Consensus 192 p~vii~Gh~h~~-~~~~~~~~~~vn~Gs 218 (243)
T cd07386 192 PDILHTGHVHVY-GVGVYRGVLLVNSGT 218 (243)
T ss_pred CCEEEECCCCch-HhEEECCEEEEECCC
Confidence 489999999994 445567777665543
No 183
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=23.91 E-value=1.3e+02 Score=28.17 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCcC
Q 015362 96 TTRFLKRIIEAEKPDFIAFTGDNI 119 (408)
Q Consensus 96 ~~~~~~~~i~~~~pD~vv~~GDli 119 (408)
.++++.++|+...-..|+++||+-
T Consensus 230 ~~~k~~EaIe~lPnA~ViFGGD~N 253 (349)
T KOG2756|consen 230 VLKKMQEAIESLPNATVIFGGDTN 253 (349)
T ss_pred HHHHHHHHHHhCCCceEEEcCccc
Confidence 346677788776556899999964
No 184
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=23.71 E-value=88 Score=30.33 Aligned_cols=28 Identities=11% Similarity=0.354 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEcCCcCCC
Q 015362 94 LNTTRFLKRIIEAEKPDFIAFTGDNIFG 121 (408)
Q Consensus 94 ~~~~~~~~~~i~~~~pD~vv~~GDli~~ 121 (408)
...++.+.+.++..+||+||++|=-.-+
T Consensus 224 m~~~E~f~~Al~~fqPdLvVvsGlhmme 251 (478)
T KOG4184|consen 224 MRAVEQFTDALKMFQPDLVVVSGLHMME 251 (478)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHHh
Confidence 4456788889999999999999964433
No 185
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.57 E-value=1.2e+02 Score=25.86 Aligned_cols=30 Identities=7% Similarity=-0.169 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhce
Q 015362 8 AKWNWKHSLLYITLIYAIIFFVDKQILQKL 37 (408)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (408)
|++|+.+++++++++.++.++....+..++
T Consensus 5 r~rRl~~v~~~~~~~~~a~~Lvl~al~~n~ 34 (159)
T PRK13150 5 RKNRLWVVCAVLAGLGLTTALVLYALRANI 34 (159)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 344444444444444443333333333343
No 186
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.22 E-value=2.4e+02 Score=21.26 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCC
Q 015362 98 RFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHD 153 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD 153 (408)
+.+.+.+....||+|++-.++-+ .. . ..+.+.++. .....|++++..++|
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~~-~~---~-~~~~~~i~~-~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELPD-GD---G-LELLEQIRQ-INPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSSS-SB---H-HHHHHHHHH-HTTTSEEEEEESSTS
T ss_pred HHHHHHhcccCceEEEEEeeecc-cc---c-ccccccccc-ccccccEEEecCCCC
Confidence 35667778889999999988543 22 2 233333332 234678887776655
No 187
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=22.63 E-value=2.7e+02 Score=25.33 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCCC
Q 015362 100 LKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQE 155 (408)
Q Consensus 100 ~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~~ 155 (408)
+.+.+.+..-|.|+++|=. +-. .+.+.+.++.+.+..+|++.-|||++.-
T Consensus 19 ~~~~~~~~gtdai~vGGS~--~vt----~~~~~~~v~~ik~~~lPvilfp~~~~~i 68 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQ--GVT----YEKTDTLIEALRRYGLPIILFPSNPTNV 68 (223)
T ss_pred HHHHHHhcCCCEEEEcCCC--ccc----HHHHHHHHHHHhccCCCEEEeCCCcccc
Confidence 4455566789999999974 111 1234444444445579999999999853
No 188
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.30 E-value=2.7e+02 Score=23.25 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCEEEEc-C--CcCCCCCcccHHHHHHHHHhhhHh--cCCCEEEE
Q 015362 98 RFLKRIIEAEKPDFIAFT-G--DNIFGSSTTDVAESMIQAFGPAME--LGLPWAAV 148 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~-G--Dli~~~~~~~~~~~~~~~l~~~~~--~~~p~~~v 148 (408)
+++.+.+ ..+||+|++. | |+..........+.+.+.+..+.+ .+.+++++
T Consensus 39 ~~l~~~~-~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 39 ARLDEDV-ALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred HHHHHHh-ccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4454444 6689987764 4 533221112233455555554444 46666664
No 189
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.29 E-value=3.7e+02 Score=21.10 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCCCCC
Q 015362 98 RFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGNHDQ 154 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GNHD~ 154 (408)
+.+.+.+.+.+||+|.++.=... . ......+.+.++.. ..+-+.+++-|+|-.
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~--~-~~~~~~~i~~l~~~-~~~~~~i~vGG~~~~ 92 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTT--H-MTLMKEVIEELKEA-GLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccc--c-HHHHHHHHHHHHHc-CCCCCeEEEECCCCC
Confidence 46778888899999999875221 1 12233444444331 111355778898854
No 190
>PTZ00486 apyrase Superfamily; Provisional
Probab=21.91 E-value=1.7e+02 Score=28.45 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.7
Q ss_pred CeEEEEEeccCcCCC
Q 015362 61 TFKILQVADMHYGMG 75 (408)
Q Consensus 61 ~~ri~~iSDlH~~~~ 75 (408)
.++|++|||+.-...
T Consensus 55 ~~~iaiIaDlD~~S~ 69 (352)
T PTZ00486 55 LFRVALVADLDKASK 69 (352)
T ss_pred eeeEEEEecCchhcc
Confidence 589999999987655
No 191
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=21.86 E-value=1.1e+02 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=19.0
Q ss_pred CCeEEEEeccCCCCCcccCCCCeEEEEeCCcCCC
Q 015362 318 GDIKAVFVGHDHTNDFCGNLNGIWFCYGGGIGYH 351 (408)
Q Consensus 318 ~~V~~v~~GH~H~n~~~~~~~gi~~~~~~~sg~~ 351 (408)
.+.+.+++||+|.. .....++. ++.-.++.|+
T Consensus 180 ~~~~~vv~GHt~~~-~~~~~~~~-i~IDtGav~g 211 (234)
T cd07423 180 RGDALVVYGHTPVP-EPRWLNNT-INIDTGCVFG 211 (234)
T ss_pred CCCeEEEECCCCCc-cceEeCCE-EEEECCCCCC
Confidence 34689999999984 33333443 3344444554
No 192
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=21.71 E-value=3.3e+02 Score=20.51 Aligned_cols=44 Identities=5% Similarity=0.076 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEc
Q 015362 98 RFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVL 149 (408)
Q Consensus 98 ~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~ 149 (408)
+...+.++.....+|++.+| ++. .....+.... .+.++|+.+|+
T Consensus 19 kqt~Kai~kg~~~~v~iA~D-a~~----~vv~~l~~lc---eek~Ip~v~V~ 62 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAED-VEV----YLMTRVLSQI---NQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHhcCCceEEEEeCC-CCH----HHHHHHHHHH---HHcCCCEEEEC
Confidence 34556677778899999999 542 1223333322 36689999884
No 193
>PHA02291 hypothetical protein
Probab=21.44 E-value=1e+02 Score=24.21 Aligned_cols=21 Identities=10% Similarity=-0.159 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 015362 10 WNWKHSLLYITLIYAIIFFVD 30 (408)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (408)
+.|++.++++++++..++.|+
T Consensus 4 K~~iFYiL~~~VL~~si~sY~ 24 (132)
T PHA02291 4 KASIFYILVVIVLAFSISSYY 24 (132)
T ss_pred chhhHHHHHHHHHHHHHHHHh
Confidence 457777777666666666654
No 194
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=20.96 E-value=3.1e+02 Score=25.60 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCcCCCC
Q 015362 95 NTTRFLKRIIEAEKPDFIAFTGDNIFGS 122 (408)
Q Consensus 95 ~~~~~~~~~i~~~~pD~vv~~GDli~~~ 122 (408)
.+.+.+.+.+...++| +|++|+...++
T Consensus 98 ~ta~~Laa~~~~~~~~-LVl~G~qa~D~ 124 (260)
T COG2086 98 ATAKALAAAVKKIGPD-LVLTGKQAIDG 124 (260)
T ss_pred HHHHHHHHHHHhcCCC-EEEEecccccC
Confidence 3445566667777888 66677755443
No 195
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=20.55 E-value=2.7e+02 Score=26.84 Aligned_cols=44 Identities=25% Similarity=0.408 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcC
Q 015362 97 TRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLG 150 (408)
Q Consensus 97 ~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~G 150 (408)
+..+.+.+.+.+||+|+..||-. ..+.-.+.. ...++|+..+-|
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~---------~~la~a~aa-~~~~ipv~h~~~ 118 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTT---------TTLAGALAA-FYLQIPVGHVEA 118 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCch---------HHHHHHHHH-HHhCCCEEEEeC
Confidence 45677888899999999999931 112111111 245889887643
No 196
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=20.53 E-value=4e+02 Score=24.53 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=41.9
Q ss_pred eEEEEEeccCcCCCCccccCccccccccccCChHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhc
Q 015362 62 FKILQVADMHYGMGKVTRCRDVTATEFKYCSDLNTTRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMEL 141 (408)
Q Consensus 62 ~ri~~iSDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~ 141 (408)
-+|-.++|+|....... ...+..+.+.+.+..-.+|.|++||=- .+.. ++ .+.+...- ...
T Consensus 144 ~~v~vlADv~VKHa~~l-------------~~~~~~~~v~dtver~~aDaVI~tG~~-TG~~-~d-~~el~~a~---~~~ 204 (263)
T COG0434 144 SRVKVLADVHVKHAVHL-------------GNRSLEEAVKDTVERGLADAVIVTGSR-TGSP-PD-LEELKLAK---EAV 204 (263)
T ss_pred CCcEEEeecchhccccc-------------CCcCHHHHHHHHHHccCCCEEEEeccc-CCCC-CC-HHHHHHHH---hcc
Confidence 36888999998765432 111223455666777899999999983 3432 22 33443221 234
Q ss_pred CCCEEEEcC
Q 015362 142 GLPWAAVLG 150 (408)
Q Consensus 142 ~~p~~~v~G 150 (408)
+.|+++--|
T Consensus 205 ~~pvlvGSG 213 (263)
T COG0434 205 DTPVLVGSG 213 (263)
T ss_pred CCCEEEecC
Confidence 588886554
No 197
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.25 E-value=2.3e+02 Score=24.16 Aligned_cols=9 Identities=11% Similarity=0.147 Sum_probs=5.5
Q ss_pred HcCCCEEEE
Q 015362 106 AEKPDFIAF 114 (408)
Q Consensus 106 ~~~pD~vv~ 114 (408)
..+||+|++
T Consensus 65 ~~~pd~Vii 73 (191)
T cd01836 65 ETRFDVAVI 73 (191)
T ss_pred cCCCCEEEE
Confidence 456776655
No 198
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=20.20 E-value=1e+02 Score=26.27 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCC
Q 015362 97 TRFLKRIIEAEKPDFIAFTGD 117 (408)
Q Consensus 97 ~~~~~~~i~~~~pD~vv~~GD 117 (408)
.+.+.+.|++.+||+||.|==
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp 98 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHP 98 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCc
Confidence 357888899999999997633
No 199
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=20.10 E-value=3e+02 Score=26.23 Aligned_cols=45 Identities=31% Similarity=0.490 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCcccHHHHHHHHHhhhHhcCCCEEEEcCC
Q 015362 97 TRFLKRIIEAEKPDFIAFTGDNIFGSSTTDVAESMIQAFGPAMELGLPWAAVLGN 151 (408)
Q Consensus 97 ~~~~~~~i~~~~pD~vv~~GDli~~~~~~~~~~~~~~~l~~~~~~~~p~~~v~GN 151 (408)
...+.+.+.+.+||+|+..||.. ..+...+.. ...++|++.+.|+
T Consensus 77 ~~~l~~~l~~~~pDvV~~~g~~~---------~~~~~~~aa-~~~~iPvv~~~~g 121 (363)
T cd03786 77 LIGLEAVLLEEKPDLVLVLGDTN---------ETLAAALAA-FKLGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHHHHhCCCEEEEeCCch---------HHHHHHHHH-HHcCCCEEEEecc
Confidence 34566677778999999999831 111111111 2348999888765
Done!