BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015363
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/387 (50%), Positives = 253/387 (65%), Gaps = 59/387 (15%)
Query: 4 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
GGG+ ++W FSQV G ++V E DIIS +EF+ SG+ LATGD+GGRVV+F+
Sbjct: 5 GGGND------IQWCFSQVKG--AVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQ 56
Query: 64 RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
Q ++ ++ +S E+ + FQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 57 ---------QEQENKIQSHSRG---EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104
Query: 124 ANSALYLLSTNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
N+A +LLSTNDKTI W + G
Sbjct: 105 KNAAQFLLSTNDKTIKL-------------WKISERDKRPEG------------------ 133
Query: 184 GCGERNFGCASNDSSF-PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242
+ D + P V++LR+PV + + A RRI+A+AH YHINSIS N
Sbjct: 134 ------YNLKEEDGRYRDPTTVTTLRVPVF-RPMDLMVEASPRRIFANAHTYHINSISIN 186
Query: 243 SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302
SD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP CN YSS
Sbjct: 187 SDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS 246
Query: 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 362
SKG+IRL DMR SALCD HSKLFEE E P RSFF+EII+SISD+KF+ +GR++++RDY+
Sbjct: 247 SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYL 306
Query: 363 TLKLWDINMDSGPVATFQVHEHLRPKV 389
++K+WD+NM++ PV T+QVHE+LR K+
Sbjct: 307 SVKVWDLNMENRPVETYQVHEYLRSKL 333
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 14/147 (9%)
Query: 229 AHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA 288
AHA + S + D ++D RI LW+ + I P + TS
Sbjct: 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP------TSL 220
Query: 289 EFHPTHCNMLAYSSSKGSIRLIDMRQSALC---DTHSK-----LFEEQEAPGTRSFFTEI 340
+HP + + G++ L+D + ++ HS+ +F P S +
Sbjct: 221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC 280
Query: 341 IASISDIKFARNGRHILSRDYMTLKLW 367
++ D + R RD++ W
Sbjct: 281 SLAVLDSSLSELFRSQAHRDFVRDATW 307
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 227 IYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 268
+YA+A D + +NN DG F S D RIN N +++ + F
Sbjct: 303 LYANAADIDYIAGTNNMDGHIFASIDMPRINKGNKKVTEEDF 344
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 230 HAHDYHINSISNNSDGETFISAD-DLRINLWNLE--ISNQSF 268
+ H+ I ++S+++DG+T SAD + IN W++ ISN+ F
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 285 ITSAEFHPTHCNMLAYSSSKGSIRLID 311
+TS E+HPTH +A S G I L D
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWD 102
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 285 ITSAEFHPTHCNMLAYSSSKGSIRLID 311
+TS E+HPTH +A S G I L D
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWD 101
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 226 RIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285
R+ H + + S ++N G ++DD + LW++ + IVD K A + V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAK-AIFTGHSAVV 232
Query: 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQ------SALCDTHSKLFEEQEAPGTRSFFTE 339
+H H ++ + + + D R S L D H+
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT----------------- 275
Query: 340 IIASISDIKFARNGRHILSRDYM--TLKLWDINMDSGPVATFQVHE 383
A ++ + F IL+ T+ LWD+ + TF+ H+
Sbjct: 276 --AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+ And L-Glutamate
Length = 692
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVL----FERT 65
A PL+W S+ + E E ++++ I + D L GD +V+ ER
Sbjct: 5 ALGTPLQWFESRTYNEHIRDEGIEQLLYIFQAAGKRDNDPLFWGDELEYMVVDFDDKERN 64
Query: 66 DTRDNGGQR--RDLEMMDYSM------SRHPEF-RYKTEFQSHEPEFDYLKSLEIEEKIN 116
D + +L M D S+ S HPE+ RY E P +Y+ S +E +
Sbjct: 65 SMLDVXHDKILTELNMEDSSLCEANDVSFHPEYGRYMLEATPASPYLNYVGSY-VEVNMQ 123
Query: 117 KIR 119
K R
Sbjct: 124 KRR 126
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 227 IYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 268
+YA+A D + +NN DG F S D IN N +++ + F
Sbjct: 303 LYANAADIDYIAGTNNMDGHIFASIDMPAINKGNKKVTEEDF 344
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 226 RIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285
R+ H + + S ++N G ++DD + LW++ + IVD K A + V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAK-AIFTGHSAVV 232
Query: 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQ------SALCDTHSKLFEEQEAPGTRSFFTE 339
+H H ++ + + + D R S L D H+
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT----------------- 275
Query: 340 IIASISDIKFARNGRHILSRDYM--TLKLWDINMDSGPVATFQVHE 383
A ++ + F IL+ T+ LWD+ + TF+ H+
Sbjct: 276 --AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+, L-Glutamate And Adp
pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
Length = 692
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVL----FERT 65
A PL+W S+ + E E ++++ I + D L GD +V+ ER
Sbjct: 5 ALGTPLQWFESRTYNEHIRDEGIEQLLYIFQAAGKRDNDPLFWGDELEYMVVDFDDKERN 64
Query: 66 DTRDNGGQR--RDLEMMDYSM------SRHPEF-RYKTEFQSHEPEFDYLKSLEIEEKIN 116
D + +L M D S+ S HPE+ RY E P +Y+ S +E +
Sbjct: 65 SMLDVCHDKILTELNMEDSSLCEANDVSFHPEYGRYMLEATPASPYLNYVGSY-VEVNMQ 123
Query: 117 KIR 119
K R
Sbjct: 124 KRR 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,156,773
Number of Sequences: 62578
Number of extensions: 483313
Number of successful extensions: 1089
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 24
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)