Query 015363
Match_columns 408
No_of_seqs 451 out of 1529
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 05:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-44 1.8E-48 292.4 21.4 282 30-407 170-457 (459)
2 KOG0271 Notchless-like WD40 re 100.0 3.4E-43 7.4E-48 285.4 24.5 295 15-407 140-478 (480)
3 KOG0271 Notchless-like WD40 re 100.0 9.2E-41 2E-45 271.3 23.6 272 30-398 110-424 (480)
4 KOG1354 Serine/threonine prote 100.0 5.9E-42 1.3E-46 274.7 15.9 330 10-404 5-334 (433)
5 KOG0272 U4/U6 small nuclear ri 100.0 1E-39 2.2E-44 268.4 17.9 258 12-368 197-458 (459)
6 KOG0315 G-protein beta subunit 100.0 1.7E-37 3.6E-42 238.5 25.8 269 31-389 35-306 (311)
7 KOG0279 G protein beta subunit 100.0 8.1E-37 1.7E-41 238.5 27.1 258 30-381 10-272 (315)
8 COG5170 CDC55 Serine/threonine 100.0 2.4E-38 5.2E-43 251.1 12.5 338 14-404 5-342 (460)
9 KOG0273 Beta-transducin family 100.0 7.7E-36 1.7E-40 248.9 27.7 268 32-399 232-509 (524)
10 KOG0286 G-protein beta subunit 100.0 3.1E-35 6.7E-40 231.2 29.3 281 30-407 50-342 (343)
11 KOG0263 Transcription initiati 100.0 1.4E-35 3.1E-40 262.4 26.4 264 35-372 378-651 (707)
12 KOG0279 G protein beta subunit 100.0 1.6E-34 3.4E-39 225.8 25.6 268 13-370 39-313 (315)
13 KOG0295 WD40 repeat-containing 100.0 2.3E-35 5E-40 238.5 21.2 264 31-391 104-384 (406)
14 KOG0286 G-protein beta subunit 100.0 5.2E-33 1.1E-37 218.7 26.3 263 13-368 78-343 (343)
15 KOG0265 U5 snRNP-specific prot 100.0 6.9E-33 1.5E-37 218.8 25.4 278 31-397 43-322 (338)
16 KOG0284 Polyadenylation factor 100.0 3.2E-34 6.9E-39 235.1 16.4 252 32-378 135-388 (464)
17 KOG0263 Transcription initiati 100.0 4.1E-33 8.8E-38 246.9 22.6 205 30-315 446-651 (707)
18 KOG0291 WD40-repeat-containing 100.0 4.7E-32 1E-36 238.6 28.7 284 11-382 329-623 (893)
19 KOG0318 WD40 repeat stress pro 100.0 6.5E-31 1.4E-35 222.5 31.7 307 33-399 188-589 (603)
20 KOG0285 Pleiotropic regulator 100.0 1.4E-32 3E-37 222.0 20.0 248 32-379 148-397 (460)
21 KOG0282 mRNA splicing factor [ 100.0 4.4E-33 9.6E-38 233.3 17.4 278 29-397 208-489 (503)
22 KOG0645 WD40 repeat protein [G 100.0 2.3E-31 5.1E-36 207.2 25.2 247 33-370 59-311 (312)
23 KOG0266 WD40 repeat-containing 100.0 3.4E-31 7.4E-36 240.2 29.3 264 34-389 158-428 (456)
24 KOG0284 Polyadenylation factor 100.0 9.2E-33 2E-37 226.6 14.8 253 34-384 95-351 (464)
25 KOG0315 G-protein beta subunit 100.0 9.7E-31 2.1E-35 201.4 24.8 261 48-398 11-273 (311)
26 KOG0295 WD40 repeat-containing 100.0 1.4E-31 3E-36 216.7 21.1 244 30-369 145-405 (406)
27 KOG0273 Beta-transducin family 100.0 5.8E-31 1.3E-35 219.9 25.4 241 31-370 272-523 (524)
28 KOG0283 WD40 repeat-containing 100.0 1.9E-30 4.1E-35 231.9 27.1 272 33-371 265-577 (712)
29 KOG0296 Angio-associated migra 100.0 3.8E-30 8.1E-35 208.5 26.0 277 30-398 59-383 (399)
30 KOG0281 Beta-TrCP (transducin 100.0 8.1E-32 1.7E-36 217.0 15.6 234 33-372 195-430 (499)
31 cd00200 WD40 WD40 domain, foun 100.0 3.1E-29 6.7E-34 216.6 32.8 278 32-407 6-288 (289)
32 KOG0291 WD40-repeat-containing 100.0 3E-30 6.5E-35 227.4 26.0 247 36-379 308-558 (893)
33 KOG0319 WD40-repeat-containing 100.0 2E-30 4.3E-35 228.0 23.3 276 31-396 319-602 (775)
34 KOG0316 Conserved WD40 repeat- 100.0 9.5E-30 2.1E-34 194.4 24.0 256 32-385 14-271 (307)
35 KOG0643 Translation initiation 100.0 1.1E-29 2.4E-34 197.5 23.7 264 30-371 5-318 (327)
36 KOG0292 Vesicle coat complex C 100.0 3.9E-30 8.6E-35 230.3 24.2 254 30-371 46-322 (1202)
37 KOG0276 Vesicle coat complex C 100.0 7.5E-30 1.6E-34 220.4 24.8 253 32-380 10-266 (794)
38 KOG0645 WD40 repeat protein [G 100.0 5.3E-29 1.2E-33 194.1 26.6 245 31-371 10-262 (312)
39 KOG0318 WD40 repeat stress pro 100.0 1.1E-28 2.4E-33 209.0 29.5 281 32-390 56-370 (603)
40 KOG0293 WD40 repeat-containing 100.0 1.9E-29 4.1E-34 207.6 23.2 268 31-391 220-490 (519)
41 KOG0313 Microtubule binding pr 100.0 3.3E-29 7E-34 204.1 24.1 279 20-389 90-395 (423)
42 KOG0285 Pleiotropic regulator 100.0 1.2E-29 2.5E-34 205.2 20.3 241 83-398 134-375 (460)
43 KOG0266 WD40 repeat-containing 100.0 8.1E-29 1.8E-33 224.7 26.9 248 30-370 198-454 (456)
44 PLN00181 protein SPA1-RELATED; 100.0 1.1E-27 2.4E-32 233.4 35.5 257 29-371 477-739 (793)
45 KOG0292 Vesicle coat complex C 100.0 6.1E-29 1.3E-33 222.8 23.5 260 34-381 8-290 (1202)
46 KOG1407 WD40 repeat protein [F 100.0 1.6E-28 3.5E-33 190.5 22.7 255 30-381 15-271 (313)
47 KOG0265 U5 snRNP-specific prot 100.0 7.9E-29 1.7E-33 195.9 20.2 247 30-368 85-336 (338)
48 KOG0277 Peroxisomal targeting 100.0 6.6E-29 1.4E-33 191.9 18.2 245 34-369 59-308 (311)
49 KOG0306 WD40-repeat-containing 100.0 4E-28 8.7E-33 213.9 25.4 284 30-408 368-662 (888)
50 KOG0772 Uncharacterized conser 100.0 1.4E-28 3E-33 208.0 21.2 298 33-400 165-475 (641)
51 KOG0319 WD40-repeat-containing 100.0 1.3E-28 2.7E-33 216.7 21.6 258 30-371 360-620 (775)
52 KOG0296 Angio-associated migra 100.0 2.1E-28 4.5E-33 198.5 21.2 283 13-370 87-398 (399)
53 KOG0281 Beta-TrCP (transducin 100.0 1.8E-29 3.9E-34 203.5 14.3 241 31-371 233-478 (499)
54 PLN00181 protein SPA1-RELATED; 100.0 8.4E-27 1.8E-31 227.2 31.9 255 32-369 529-792 (793)
55 KOG0275 Conserved WD40 repeat- 100.0 3.7E-28 8E-33 194.4 18.0 274 33-390 211-486 (508)
56 KOG0293 WD40 repeat-containing 100.0 2.6E-28 5.7E-33 200.9 17.3 245 30-371 264-514 (519)
57 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-26 3.1E-31 184.9 26.6 265 34-370 13-303 (311)
58 KOG0640 mRNA cleavage stimulat 100.0 3.2E-28 6.9E-33 193.5 17.0 299 32-398 109-412 (430)
59 KOG2096 WD40 repeat protein [G 100.0 3.2E-27 6.8E-32 188.5 22.7 291 30-368 81-400 (420)
60 KOG0277 Peroxisomal targeting 100.0 1.7E-27 3.6E-32 184.2 19.1 228 113-398 61-294 (311)
61 PTZ00421 coronin; Provisional 100.0 3.2E-26 6.9E-31 206.9 30.7 280 18-381 5-300 (493)
62 KOG0268 Sof1-like rRNA process 100.0 2E-28 4.2E-33 198.5 14.6 281 19-371 50-346 (433)
63 KOG0973 Histone transcription 100.0 4.1E-27 9E-32 216.1 25.1 284 16-371 41-356 (942)
64 KOG0264 Nucleosome remodeling 100.0 3.9E-27 8.5E-32 196.5 22.1 272 32-370 121-404 (422)
65 cd00200 WD40 WD40 domain, foun 100.0 3.6E-26 7.8E-31 197.4 29.4 241 31-368 47-289 (289)
66 KOG0313 Microtubule binding pr 100.0 6.6E-27 1.4E-31 190.7 22.1 266 30-371 139-419 (423)
67 KOG0282 mRNA splicing factor [ 100.0 3E-28 6.5E-33 204.5 14.2 259 15-368 240-503 (503)
68 KOG0305 Anaphase promoting com 100.0 1.2E-26 2.6E-31 202.3 24.8 237 35-371 217-462 (484)
69 KOG1332 Vesicle coat complex C 100.0 2.6E-27 5.7E-32 182.1 17.9 266 31-375 7-291 (299)
70 KOG0276 Vesicle coat complex C 100.0 8.8E-27 1.9E-31 201.6 22.8 249 34-379 54-306 (794)
71 KOG0641 WD40 repeat protein [G 100.0 1.3E-25 2.8E-30 171.0 26.3 252 33-370 87-349 (350)
72 KOG0310 Conserved WD40 repeat- 100.0 2.2E-26 4.7E-31 193.6 22.2 242 34-370 67-309 (487)
73 KOG0289 mRNA splicing factor [ 100.0 5.3E-26 1.2E-30 188.5 23.4 278 35-407 219-503 (506)
74 KOG0316 Conserved WD40 repeat- 100.0 3.5E-26 7.7E-31 175.0 19.6 218 113-396 18-239 (307)
75 PTZ00421 coronin; Provisional 99.9 3.1E-25 6.8E-30 200.5 28.8 255 30-371 70-332 (493)
76 KOG0647 mRNA export protein (c 99.9 4.3E-25 9.4E-30 175.0 24.9 279 33-399 25-309 (347)
77 KOG0274 Cdc4 and related F-box 99.9 9.7E-26 2.1E-30 204.0 22.8 260 16-381 232-492 (537)
78 KOG0306 WD40-repeat-containing 99.9 9.9E-26 2.2E-30 199.0 21.8 246 36-371 413-665 (888)
79 KOG4283 Transcription-coupled 99.9 1E-24 2.2E-29 172.5 24.7 305 32-407 40-360 (397)
80 KOG0274 Cdc4 and related F-box 99.9 4E-25 8.7E-30 200.1 25.8 252 34-390 207-461 (537)
81 KOG0278 Serine/threonine kinas 99.9 8.8E-27 1.9E-31 179.8 12.5 245 29-371 53-298 (334)
82 KOG0294 WD40 repeat-containing 99.9 7.6E-25 1.7E-29 174.7 23.7 254 13-372 27-283 (362)
83 KOG0299 U3 snoRNP-associated p 99.9 6.7E-25 1.5E-29 183.4 23.7 293 32-396 139-438 (479)
84 PTZ00420 coronin; Provisional 99.9 1.6E-24 3.5E-29 196.8 28.1 238 30-353 69-318 (568)
85 KOG0288 WD40 repeat protein Ti 99.9 2.9E-26 6.3E-31 188.9 15.1 276 31-402 171-451 (459)
86 KOG2445 Nuclear pore complex c 99.9 1.9E-24 4.2E-29 171.8 24.4 293 31-383 9-333 (361)
87 KOG0308 Conserved WD40 repeat- 99.9 9.6E-26 2.1E-30 196.0 17.8 261 31-375 17-290 (735)
88 KOG0288 WD40 repeat protein Ti 99.9 8.2E-26 1.8E-30 186.3 16.3 244 30-368 214-459 (459)
89 KOG0772 Uncharacterized conser 99.9 3.7E-25 8E-30 187.4 19.9 263 34-369 213-486 (641)
90 KOG0300 WD40 repeat-containing 99.9 3.9E-25 8.5E-30 176.6 18.3 267 30-380 143-436 (481)
91 KOG0641 WD40 repeat protein [G 99.9 3.3E-23 7.1E-28 158.0 27.7 266 32-370 29-303 (350)
92 KOG0305 Anaphase promoting com 99.9 5E-24 1.1E-28 186.0 25.9 260 39-398 181-446 (484)
93 KOG0269 WD40 repeat-containing 99.9 5.3E-25 1.2E-29 195.1 19.3 286 35-407 39-335 (839)
94 PTZ00420 coronin; Provisional 99.9 2.5E-23 5.5E-28 189.1 30.8 226 53-371 50-294 (568)
95 KOG1036 Mitotic spindle checkp 99.9 1.5E-23 3.2E-28 166.9 25.3 279 34-401 12-292 (323)
96 KOG0640 mRNA cleavage stimulat 99.9 1.1E-24 2.3E-29 173.6 18.4 223 113-382 113-346 (430)
97 KOG0278 Serine/threonine kinas 99.9 5.7E-25 1.2E-29 169.9 16.2 276 31-407 10-294 (334)
98 KOG0299 U3 snoRNP-associated p 99.9 4.4E-24 9.5E-29 178.6 20.6 248 33-369 200-455 (479)
99 KOG1407 WD40 repeat protein [F 99.9 1.6E-23 3.4E-28 162.9 22.0 245 14-359 44-290 (313)
100 KOG0302 Ribosome Assembly prot 99.9 4.3E-24 9.3E-29 174.3 19.8 228 31-372 147-380 (440)
101 KOG0289 mRNA splicing factor [ 99.9 2.2E-23 4.8E-28 173.1 24.1 247 31-369 257-505 (506)
102 KOG0310 Conserved WD40 repeat- 99.9 1.5E-23 3.2E-28 176.7 22.7 256 31-384 22-281 (487)
103 KOG0647 mRNA export protein (c 99.9 1.4E-23 3E-28 166.6 21.0 248 16-359 54-311 (347)
104 KOG0646 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 175.5 21.6 241 34-390 80-326 (476)
105 KOG1274 WD40 repeat protein [G 99.9 8.4E-23 1.8E-27 184.6 27.2 248 32-371 10-263 (933)
106 KOG0275 Conserved WD40 repeat- 99.9 3.3E-24 7.2E-29 171.8 15.7 220 112-384 213-435 (508)
107 KOG0264 Nucleosome remodeling 99.9 1.3E-23 2.8E-28 175.6 19.0 247 107-393 119-380 (422)
108 KOG0973 Histone transcription 99.9 4.2E-23 9.2E-28 190.0 23.9 264 35-378 13-319 (942)
109 KOG0283 WD40 repeat-containing 99.9 3.2E-23 6.9E-28 186.0 21.0 250 111-390 266-551 (712)
110 KOG0301 Phospholipase A2-activ 99.9 9.8E-23 2.1E-27 178.7 23.2 272 30-407 9-285 (745)
111 KOG0269 WD40 repeat-containing 99.9 2.6E-24 5.7E-29 190.7 13.3 246 37-371 89-341 (839)
112 KOG0308 Conserved WD40 repeat- 99.9 1.2E-23 2.5E-28 183.2 16.2 237 10-316 45-288 (735)
113 KOG1273 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 161.7 21.1 260 38-384 26-293 (405)
114 KOG0300 WD40 repeat-containing 99.9 7.8E-23 1.7E-27 163.6 18.7 272 31-372 186-478 (481)
115 KOG2055 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 169.5 20.6 267 34-370 212-512 (514)
116 KOG2048 WD40 repeat protein [G 99.9 3.3E-21 7.1E-26 168.9 28.9 250 35-372 25-277 (691)
117 KOG1036 Mitotic spindle checkp 99.9 4.9E-22 1.1E-26 158.3 20.8 235 30-361 49-294 (323)
118 KOG0267 Microtubule severing p 99.9 4.4E-24 9.5E-29 187.9 10.0 235 30-361 23-258 (825)
119 KOG0639 Transducin-like enhanc 99.9 1E-22 2.2E-27 172.4 17.5 282 31-408 415-702 (705)
120 KOG1408 WD40 repeat protein [F 99.9 3.2E-22 7E-27 176.2 21.0 327 13-390 347-690 (1080)
121 KOG1408 WD40 repeat protein [F 99.9 2.8E-22 6.1E-27 176.6 19.7 256 30-371 454-714 (1080)
122 KOG0301 Phospholipase A2-activ 99.9 5.3E-22 1.1E-26 174.2 21.1 235 31-371 53-289 (745)
123 KOG1332 Vesicle coat complex C 99.9 2.9E-22 6.4E-27 154.5 16.6 224 30-313 51-286 (299)
124 KOG0643 Translation initiation 99.9 4E-21 8.8E-26 150.1 22.7 224 95-392 5-241 (327)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.6E-20 7.7E-25 161.5 30.2 255 35-384 30-292 (300)
126 KOG0650 WD40 repeat nucleolar 99.9 7.6E-22 1.6E-26 170.5 18.6 284 21-367 386-732 (733)
127 KOG2919 Guanine nucleotide-bin 99.9 2.1E-20 4.5E-25 150.1 24.5 285 36-387 50-344 (406)
128 KOG4328 WD40 protein [Function 99.9 2.6E-21 5.6E-26 162.0 20.2 275 32-384 183-463 (498)
129 KOG1446 Histone H3 (Lys4) meth 99.9 4.1E-20 8.9E-25 148.2 26.1 215 113-385 15-231 (311)
130 KOG0639 Transducin-like enhanc 99.9 1.2E-21 2.7E-26 165.8 18.0 257 14-369 442-703 (705)
131 KOG0270 WD40 repeat-containing 99.9 4.9E-21 1.1E-25 159.8 19.6 256 47-372 192-451 (463)
132 KOG0294 WD40 repeat-containing 99.9 4.6E-20 9.9E-25 147.6 23.1 255 49-393 3-259 (362)
133 KOG0302 Ribosome Assembly prot 99.9 3.1E-21 6.7E-26 157.8 16.4 220 32-367 208-435 (440)
134 KOG2096 WD40 repeat protein [G 99.9 7E-21 1.5E-25 152.5 17.9 273 94-406 80-398 (420)
135 KOG1539 WD repeat protein [Gen 99.9 1.1E-19 2.4E-24 163.0 26.9 296 13-382 183-617 (910)
136 KOG4283 Transcription-coupled 99.9 1.5E-20 3.2E-25 149.1 18.2 224 113-372 44-278 (397)
137 KOG0321 WD40 repeat-containing 99.9 2.1E-20 4.6E-25 162.8 20.7 285 34-390 46-367 (720)
138 KOG4378 Nuclear protein COP1 [ 99.9 2.2E-20 4.8E-25 158.1 19.2 265 37-395 36-305 (673)
139 KOG2106 Uncharacterized conser 99.9 3.8E-19 8.1E-24 151.0 26.5 259 35-369 246-520 (626)
140 KOG2106 Uncharacterized conser 99.9 1.4E-18 3.1E-23 147.5 29.6 276 30-398 195-506 (626)
141 KOG0307 Vesicle coat complex C 99.9 3.6E-21 7.8E-26 178.3 15.3 259 30-371 59-328 (1049)
142 KOG1587 Cytoplasmic dynein int 99.9 2.4E-19 5.3E-24 161.4 23.8 289 13-371 223-517 (555)
143 KOG0321 WD40 repeat-containing 99.9 2.1E-19 4.5E-24 156.7 21.7 270 30-372 95-393 (720)
144 KOG1007 WD repeat protein TSSC 99.9 3E-19 6.6E-24 141.3 20.6 274 31-370 59-361 (370)
145 KOG1063 RNA polymerase II elon 99.8 3.8E-19 8.3E-24 156.4 22.7 332 30-408 186-600 (764)
146 KOG0646 WD40 repeat protein [G 99.8 7.4E-20 1.6E-24 153.8 16.7 236 11-313 102-350 (476)
147 KOG0268 Sof1-like rRNA process 99.8 3.9E-20 8.5E-25 150.6 14.2 232 92-371 58-303 (433)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.4E-17 3.1E-22 145.1 30.7 240 47-380 1-246 (300)
149 KOG0267 Microtubule severing p 99.8 1.1E-20 2.4E-25 166.8 10.9 197 113-371 29-227 (825)
150 KOG0270 WD40 repeat-containing 99.8 8.3E-20 1.8E-24 152.5 15.2 211 32-318 240-454 (463)
151 KOG0303 Actin-binding protein 99.8 3.8E-19 8.3E-24 146.5 17.8 254 18-396 10-274 (472)
152 KOG1063 RNA polymerase II elon 99.8 5.2E-18 1.1E-22 149.4 25.9 287 31-370 50-391 (764)
153 KOG0307 Vesicle coat complex C 99.8 1E-19 2.2E-24 168.9 14.4 223 112-385 64-298 (1049)
154 KOG4328 WD40 protein [Function 99.8 6.2E-19 1.3E-23 147.9 17.6 209 113-370 187-399 (498)
155 KOG4378 Nuclear protein COP1 [ 99.8 3.4E-19 7.5E-24 151.0 15.8 221 39-353 83-305 (673)
156 KOG2048 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 148.0 24.0 240 113-406 26-271 (691)
157 KOG0290 Conserved WD40 repeat- 99.8 2.3E-18 4.9E-23 136.5 18.2 255 32-366 93-361 (364)
158 KOG0322 G-protein beta subunit 99.8 4.4E-19 9.5E-24 138.6 13.9 277 32-369 11-322 (323)
159 KOG1539 WD repeat protein [Gen 99.8 2.3E-18 5E-23 154.6 19.4 195 36-371 449-649 (910)
160 KOG0649 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 129.2 20.3 250 36-400 11-262 (325)
161 KOG1274 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 151.2 23.7 234 30-357 50-286 (933)
162 KOG1310 WD40 repeat protein [G 99.8 2E-18 4.3E-23 148.3 17.1 249 30-379 45-312 (758)
163 KOG1188 WD40 repeat protein [G 99.8 6.9E-18 1.5E-22 136.7 18.1 203 48-379 41-250 (376)
164 KOG1034 Transcriptional repres 99.8 2.6E-18 5.7E-23 138.4 15.1 260 33-370 87-383 (385)
165 KOG0303 Actin-binding protein 99.8 1.1E-17 2.5E-22 137.9 18.6 229 29-328 75-309 (472)
166 KOG2055 WD40 repeat protein [G 99.8 1.6E-17 3.4E-22 139.8 19.2 242 34-313 256-512 (514)
167 KOG0290 Conserved WD40 repeat- 99.8 6.4E-17 1.4E-21 128.4 21.5 284 36-400 45-353 (364)
168 KOG2445 Nuclear pore complex c 99.8 1.4E-17 3.1E-22 133.1 17.9 242 30-315 54-320 (361)
169 KOG1273 WD40 repeat protein [G 99.8 7.9E-17 1.7E-21 129.3 21.0 274 12-371 45-323 (405)
170 KOG0642 Cell-cycle nuclear pro 99.8 4.5E-18 9.8E-23 146.5 14.8 271 31-383 290-573 (577)
171 KOG2919 Guanine nucleotide-bin 99.8 3.8E-17 8.2E-22 131.6 17.9 277 35-397 104-397 (406)
172 KOG1538 Uncharacterized conser 99.8 6.3E-17 1.4E-21 142.3 20.1 251 37-371 14-294 (1081)
173 KOG1517 Guanine nucleotide bin 99.8 2.4E-16 5.2E-21 145.4 24.2 271 37-384 1066-1345(1387)
174 PRK11028 6-phosphogluconolacto 99.8 1.9E-15 4.1E-20 133.1 29.4 261 32-371 31-305 (330)
175 KOG1523 Actin-related protein 99.8 3.3E-16 7.1E-21 126.1 20.3 227 35-380 10-246 (361)
176 KOG4227 WD40 repeat protein [G 99.8 2.1E-16 4.5E-21 130.6 19.2 297 30-398 51-372 (609)
177 KOG0644 Uncharacterized conser 99.7 9.6E-18 2.1E-22 150.8 11.5 248 31-371 186-469 (1113)
178 KOG1009 Chromatin assembly com 99.7 7.1E-16 1.5E-20 127.9 21.2 286 12-370 36-372 (434)
179 KOG1445 Tumor-specific antigen 99.7 5.5E-17 1.2E-21 141.9 15.2 240 43-408 587-842 (1012)
180 KOG0650 WD40 repeat nucleolar 99.7 2.1E-16 4.6E-21 137.2 18.2 235 92-386 392-653 (733)
181 KOG2110 Uncharacterized conser 99.7 3.9E-15 8.6E-20 122.2 24.0 238 35-371 5-249 (391)
182 KOG1009 Chromatin assembly com 99.7 2.2E-16 4.7E-21 130.9 16.6 227 35-359 13-248 (434)
183 KOG1034 Transcriptional repres 99.7 9.9E-17 2.1E-21 129.4 13.1 235 30-313 130-383 (385)
184 KOG1007 WD repeat protein TSSC 99.7 6.4E-16 1.4E-20 122.7 17.4 217 33-313 121-361 (370)
185 KOG1334 WD40 repeat protein [G 99.7 2.8E-16 6.1E-21 133.3 14.9 292 31-390 138-443 (559)
186 KOG1963 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 137.9 20.3 277 41-381 22-332 (792)
187 KOG1963 WD40 repeat protein [G 99.7 3.6E-15 7.9E-20 135.4 22.9 273 31-371 201-539 (792)
188 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 138.1 20.2 207 113-385 204-417 (429)
189 KOG0771 Prolactin regulatory e 99.7 4.2E-16 9.2E-21 130.0 15.2 206 39-315 148-356 (398)
190 COG2319 FOG: WD40 repeat [Gene 99.7 1.9E-13 4.2E-18 125.1 32.9 266 31-390 61-335 (466)
191 KOG1445 Tumor-specific antigen 99.7 6.5E-16 1.4E-20 135.3 14.0 217 32-316 624-847 (1012)
192 KOG1240 Protein kinase contain 99.7 2.5E-14 5.4E-19 134.3 23.9 294 12-372 1029-1336(1431)
193 KOG3881 Uncharacterized conser 99.7 2.1E-14 4.5E-19 118.9 19.6 272 32-389 52-338 (412)
194 KOG1524 WD40 repeat-containing 99.7 3.4E-15 7.3E-20 128.3 15.4 205 48-366 76-282 (737)
195 KOG4497 Uncharacterized conser 99.7 8.6E-15 1.9E-19 118.5 16.3 283 35-407 48-386 (447)
196 KOG1517 Guanine nucleotide bin 99.7 1.9E-14 4.2E-19 133.1 20.4 263 35-371 1109-1382(1387)
197 KOG0642 Cell-cycle nuclear pro 99.7 3.6E-15 7.7E-20 128.9 14.7 222 30-316 339-564 (577)
198 KOG2111 Uncharacterized conser 99.6 4.2E-13 9E-18 108.4 24.1 238 38-371 8-257 (346)
199 PRK01742 tolB translocation pr 99.6 2.3E-14 5E-19 130.2 19.2 218 32-352 200-426 (429)
200 KOG1524 WD40 repeat-containing 99.6 1.4E-14 2.9E-19 124.7 15.8 176 127-366 76-251 (737)
201 KOG2139 WD40 repeat protein [G 99.6 2E-13 4.4E-18 112.0 21.6 262 35-370 140-431 (445)
202 PF08662 eIF2A: Eukaryotic tra 99.6 5.5E-14 1.2E-18 112.3 18.0 116 233-380 59-187 (194)
203 COG2319 FOG: WD40 repeat [Gene 99.6 2.2E-12 4.9E-17 118.1 30.9 255 30-382 150-411 (466)
204 KOG1188 WD40 repeat protein [G 99.6 2.7E-14 5.9E-19 116.1 15.6 227 30-370 65-346 (376)
205 PRK11028 6-phosphogluconolacto 99.6 2.7E-12 5.8E-17 113.2 29.7 216 114-373 36-261 (330)
206 KOG0322 G-protein beta subunit 99.6 9.2E-14 2E-18 109.2 17.4 261 13-312 36-322 (323)
207 KOG4227 WD40 repeat protein [G 99.6 5.2E-14 1.1E-18 116.6 16.9 291 13-369 79-386 (609)
208 KOG2394 WD40 protein DMR-N9 [G 99.6 4.8E-14 1E-18 121.3 17.1 92 234-350 291-383 (636)
209 KOG1538 Uncharacterized conser 99.6 1E-12 2.2E-17 116.3 24.5 236 30-312 48-292 (1081)
210 KOG1587 Cytoplasmic dynein int 99.6 8E-13 1.7E-17 119.7 23.8 237 113-389 243-492 (555)
211 PRK02889 tolB translocation pr 99.6 6.1E-13 1.3E-17 120.7 22.9 208 113-384 196-415 (427)
212 KOG1272 WD40-repeat-containing 99.6 1.1E-14 2.3E-19 123.1 10.2 262 5-369 91-361 (545)
213 PRK03629 tolB translocation pr 99.6 1.5E-12 3.2E-17 118.1 24.7 205 113-385 199-419 (429)
214 KOG2321 WD40 repeat protein [G 99.6 7.6E-13 1.6E-17 115.0 21.3 265 31-390 47-320 (703)
215 KOG0649 WD40 repeat protein [G 99.6 2.8E-12 6E-17 99.8 20.9 214 30-370 57-274 (325)
216 KOG2139 WD40 repeat protein [G 99.6 7.8E-13 1.7E-17 108.6 18.2 214 35-374 98-313 (445)
217 KOG0771 Prolactin regulatory e 99.5 1.5E-13 3.2E-18 115.0 14.2 200 116-371 148-355 (398)
218 KOG1240 Protein kinase contain 99.5 5.6E-13 1.2E-17 125.5 18.8 239 86-382 1034-1284(1431)
219 KOG2110 Uncharacterized conser 99.5 5.6E-11 1.2E-15 98.2 27.9 160 113-315 88-250 (391)
220 PRK04922 tolB translocation pr 99.5 1.5E-12 3.3E-17 118.6 21.1 203 113-383 204-422 (433)
221 PRK05137 tolB translocation pr 99.5 6.8E-12 1.5E-16 114.5 24.0 200 113-380 202-420 (435)
222 PF10282 Lactonase: Lactonase, 99.5 2.2E-10 4.8E-15 101.1 32.3 281 33-378 34-330 (345)
223 PRK03629 tolB translocation pr 99.5 3.9E-12 8.4E-17 115.4 21.1 219 33-351 196-427 (429)
224 KOG0644 Uncharacterized conser 99.5 1.4E-13 3E-18 124.5 10.5 206 113-380 191-435 (1113)
225 KOG2394 WD40 protein DMR-N9 [G 99.5 7.9E-13 1.7E-17 114.0 14.2 76 234-317 333-456 (636)
226 PF02239 Cytochrom_D1: Cytochr 99.5 1.1E-10 2.3E-15 103.0 27.3 259 39-380 40-356 (369)
227 PRK05137 tolB translocation pr 99.5 1.2E-11 2.7E-16 112.8 21.1 200 32-316 198-415 (435)
228 KOG1272 WD40-repeat-containing 99.5 5E-13 1.1E-17 113.2 10.4 200 115-381 132-333 (545)
229 KOG4497 Uncharacterized conser 99.4 9.7E-13 2.1E-17 106.8 11.0 222 40-370 13-240 (447)
230 PRK04922 tolB translocation pr 99.4 1.2E-11 2.7E-16 112.7 19.3 201 32-315 200-413 (433)
231 KOG1523 Actin-related protein 99.4 2.7E-11 5.8E-16 98.2 18.7 173 30-316 50-239 (361)
232 KOG3881 Uncharacterized conser 99.4 2.1E-11 4.5E-16 101.4 18.4 204 48-318 116-325 (412)
233 KOG2315 Predicted translation 99.4 3E-10 6.5E-15 99.0 25.9 163 176-379 222-397 (566)
234 PRK01029 tolB translocation pr 99.4 2.6E-10 5.7E-15 103.1 26.0 207 113-379 185-411 (428)
235 PRK02889 tolB translocation pr 99.4 2.7E-11 5.8E-16 110.1 19.6 199 32-313 192-403 (427)
236 PF08662 eIF2A: Eukaryotic tra 99.4 6E-11 1.3E-15 94.9 17.0 112 113-267 60-183 (194)
237 TIGR02800 propeller_TolB tol-p 99.4 3E-10 6.4E-15 103.8 23.7 201 113-381 190-406 (417)
238 COG2706 3-carboxymuconate cycl 99.4 1.1E-08 2.4E-13 85.1 29.4 299 11-379 15-330 (346)
239 KOG1409 Uncharacterized conser 99.3 2.5E-10 5.3E-15 93.6 18.7 205 34-315 67-272 (404)
240 KOG1310 WD40 repeat protein [G 99.3 7E-12 1.5E-16 108.6 10.3 166 229-407 46-228 (758)
241 PRK04792 tolB translocation pr 99.3 4.1E-10 8.8E-15 102.8 22.3 204 113-384 218-437 (448)
242 KOG4547 WD40 repeat-containing 99.3 1.2E-10 2.7E-15 102.0 17.7 127 243-394 68-195 (541)
243 KOG0974 WD-repeat protein WDR6 99.3 1E-10 2.2E-15 108.9 18.1 189 126-371 99-289 (967)
244 KOG1064 RAVE (regulator of V-A 99.3 1.8E-11 3.8E-16 119.7 13.4 224 30-407 2203-2432(2439)
245 PRK00178 tolB translocation pr 99.3 7.5E-10 1.6E-14 101.3 23.5 202 113-382 199-416 (430)
246 KOG2111 Uncharacterized conser 99.3 2.3E-09 5E-14 87.2 23.0 162 113-316 95-259 (346)
247 KOG4547 WD40 repeat-containing 99.3 5.9E-10 1.3E-14 97.9 20.1 115 230-371 99-221 (541)
248 PF02239 Cytochrom_D1: Cytochr 99.3 4.1E-09 8.8E-14 93.0 24.7 251 48-380 6-311 (369)
249 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.5E-08 3.2E-13 87.5 26.6 254 43-379 53-338 (352)
250 KOG0280 Uncharacterized conser 99.3 8.7E-10 1.9E-14 88.6 17.4 210 113-371 70-285 (339)
251 PRK01029 tolB translocation pr 99.2 2.8E-09 6.1E-14 96.5 22.1 205 34-317 183-407 (428)
252 PRK00178 tolB translocation pr 99.2 1.9E-09 4.1E-14 98.7 21.2 199 32-315 195-408 (430)
253 TIGR02800 propeller_TolB tol-p 99.2 1.6E-09 3.4E-14 99.1 19.9 197 32-313 186-397 (417)
254 PRK04792 tolB translocation pr 99.2 1.6E-09 3.4E-14 99.0 19.6 199 33-314 215-426 (448)
255 KOG1334 WD40 repeat protein [G 99.2 2.9E-10 6.2E-15 97.4 13.4 270 31-371 181-467 (559)
256 KOG2041 WD40 repeat protein [G 99.2 2.3E-09 4.9E-14 96.4 18.8 282 32-391 11-316 (1189)
257 PF10282 Lactonase: Lactonase, 99.2 2.3E-07 5E-12 82.1 31.0 220 113-371 37-276 (345)
258 KOG2321 WD40 repeat protein [G 99.2 1.1E-09 2.3E-14 95.9 15.6 165 113-370 176-343 (703)
259 KOG1354 Serine/threonine prote 99.2 4.9E-09 1.1E-13 86.2 18.4 264 16-317 61-363 (433)
260 KOG4532 WD40-like repeat conta 99.1 1.3E-08 2.9E-13 80.9 18.6 246 48-371 85-332 (344)
261 COG4946 Uncharacterized protei 99.1 4.2E-08 9.1E-13 84.3 21.4 121 110-269 357-483 (668)
262 PF04762 IKI3: IKI3 family; I 99.1 2E-07 4.3E-12 91.6 27.8 296 35-371 120-457 (928)
263 KOG0280 Uncharacterized conser 99.1 1.6E-08 3.4E-13 81.5 16.2 127 236-382 124-253 (339)
264 PLN02919 haloacid dehalogenase 99.0 5.2E-07 1.1E-11 90.4 29.3 287 39-371 571-889 (1057)
265 COG2706 3-carboxymuconate cycl 99.0 8.6E-08 1.9E-12 79.9 19.6 174 176-384 44-235 (346)
266 KOG4532 WD40-like repeat conta 99.0 1.8E-07 3.9E-12 74.6 20.5 204 127-384 85-295 (344)
267 COG5354 Uncharacterized protei 99.0 1.5E-07 3.2E-12 81.7 21.7 281 36-371 72-396 (561)
268 KOG0974 WD-repeat protein WDR6 99.0 1.4E-08 3E-13 95.2 16.2 202 35-315 87-290 (967)
269 KOG0882 Cyclophilin-related pe 99.0 1.1E-08 2.3E-13 87.2 13.0 292 33-394 7-328 (558)
270 KOG3914 WD repeat protein WDR4 99.0 3.7E-08 8E-13 82.8 15.6 80 230-318 148-228 (390)
271 KOG2314 Translation initiation 98.9 6.2E-07 1.3E-11 78.8 22.0 75 282-371 445-526 (698)
272 PF15492 Nbas_N: Neuroblastoma 98.9 2.4E-06 5.2E-11 69.3 23.6 42 342-384 230-272 (282)
273 PRK04043 tolB translocation pr 98.9 5E-07 1.1E-11 81.5 21.9 198 114-381 189-409 (419)
274 KOG4190 Uncharacterized conser 98.9 6.8E-09 1.5E-13 90.8 8.4 217 30-315 730-950 (1034)
275 KOG2041 WD40 repeat protein [G 98.9 1.7E-07 3.8E-12 84.7 17.2 248 31-370 67-337 (1189)
276 KOG0309 Conserved WD40 repeat- 98.9 1.4E-08 3E-13 91.8 10.3 209 32-371 21-233 (1081)
277 PF04762 IKI3: IKI3 family; I 98.9 1.1E-05 2.3E-10 79.7 30.9 340 34-407 208-604 (928)
278 KOG4714 Nucleoporin [Nuclear s 98.9 7E-08 1.5E-12 76.5 12.2 74 234-314 180-255 (319)
279 KOG3914 WD repeat protein WDR4 98.8 6.5E-08 1.4E-12 81.4 12.0 118 237-381 111-233 (390)
280 PLN02919 haloacid dehalogenase 98.8 2.7E-06 5.9E-11 85.4 25.1 246 37-317 625-892 (1057)
281 COG5354 Uncharacterized protei 98.8 2.3E-06 5.1E-11 74.5 20.5 105 238-371 227-349 (561)
282 KOG2314 Translation initiation 98.8 2.7E-06 5.9E-11 74.9 21.0 283 33-370 248-573 (698)
283 KOG1409 Uncharacterized conser 98.8 4.9E-07 1.1E-11 74.7 15.5 245 32-371 21-271 (404)
284 KOG2315 Predicted translation 98.7 4.5E-06 9.8E-11 73.6 21.0 202 33-315 163-392 (566)
285 KOG2695 WD40 repeat protein [G 98.7 4.6E-08 1E-12 80.7 7.9 131 233-384 252-389 (425)
286 KOG4714 Nucleoporin [Nuclear s 98.7 2.7E-07 5.8E-12 73.3 11.7 73 284-371 181-255 (319)
287 PF00400 WD40: WD domain, G-be 98.7 3.6E-08 7.9E-13 56.2 5.2 33 31-63 7-39 (39)
288 KOG4190 Uncharacterized conser 98.7 7.7E-08 1.7E-12 84.4 8.9 172 187-379 739-914 (1034)
289 KOG0309 Conserved WD40 repeat- 98.7 5.8E-07 1.2E-11 81.7 13.6 254 38-371 70-340 (1081)
290 PF08450 SGL: SMP-30/Gluconola 98.7 9.2E-05 2E-09 62.3 26.4 225 40-357 4-241 (246)
291 TIGR03300 assembly_YfgL outer 98.7 1.8E-05 4E-10 71.3 23.3 132 245-407 241-374 (377)
292 PRK04043 tolB translocation pr 98.6 1E-05 2.2E-10 73.2 21.0 193 36-315 188-402 (419)
293 KOG1064 RAVE (regulator of V-A 98.6 2.4E-07 5.3E-12 91.9 10.1 159 190-383 2215-2378(2439)
294 PF15492 Nbas_N: Neuroblastoma 98.6 1.7E-05 3.7E-10 64.5 17.9 44 281-329 228-271 (282)
295 PF00400 WD40: WD domain, G-be 98.6 2.7E-07 5.9E-12 52.5 5.7 37 92-142 3-39 (39)
296 KOG2114 Vacuolar assembly/sort 98.5 4E-05 8.8E-10 71.4 22.0 234 14-328 3-255 (933)
297 COG4946 Uncharacterized protei 98.5 1.9E-05 4.1E-10 68.5 18.6 120 230-376 356-482 (668)
298 PF07433 DUF1513: Protein of u 98.5 0.00021 4.5E-09 60.1 23.4 228 113-382 5-258 (305)
299 KOG2066 Vacuolar assembly/sort 98.5 1.4E-05 3E-10 73.8 17.5 194 33-315 37-235 (846)
300 PF07433 DUF1513: Protein of u 98.5 0.00055 1.2E-08 57.6 24.9 251 38-368 7-283 (305)
301 PF08596 Lgl_C: Lethal giant l 98.5 0.00016 3.4E-09 64.5 23.0 280 37-369 3-334 (395)
302 KOG1920 IkappaB kinase complex 98.4 9.2E-05 2E-09 71.7 21.8 220 36-315 69-324 (1265)
303 KOG2695 WD40 repeat protein [G 98.4 1.4E-06 3.1E-11 72.1 8.5 160 119-318 218-381 (425)
304 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.0011 2.4E-08 57.8 27.4 219 120-381 53-297 (352)
305 COG5170 CDC55 Serine/threonine 98.4 1.1E-05 2.5E-10 66.0 12.5 130 234-370 222-367 (460)
306 PF11768 DUF3312: Protein of u 98.3 1.3E-05 2.8E-10 71.8 13.1 80 30-148 254-333 (545)
307 TIGR03300 assembly_YfgL outer 98.3 0.00023 5E-09 64.1 21.6 203 126-367 145-376 (377)
308 PF08450 SGL: SMP-30/Gluconola 98.3 0.001 2.2E-08 56.0 23.6 208 117-382 4-223 (246)
309 KOG1645 RING-finger-containing 98.3 0.00021 4.6E-09 60.9 18.2 222 113-382 194-430 (463)
310 KOG0882 Cyclophilin-related pe 98.3 1.3E-05 2.8E-10 69.0 11.1 226 111-381 8-241 (558)
311 PF11768 DUF3312: Protein of u 98.3 7.2E-06 1.6E-10 73.3 10.1 73 280-371 257-330 (545)
312 KOG1912 WD40 repeat protein [G 98.3 6.7E-05 1.5E-09 69.2 16.1 222 33-314 53-305 (1062)
313 KOG1832 HIV-1 Vpr-binding prot 98.2 1.3E-06 2.9E-11 81.1 5.0 217 31-359 1097-1319(1516)
314 PF06977 SdiA-regulated: SdiA- 98.2 0.00099 2.1E-08 55.2 20.9 218 113-367 22-247 (248)
315 KOG1920 IkappaB kinase complex 98.2 0.00032 7E-09 68.1 19.7 194 35-263 109-323 (1265)
316 KOG2114 Vacuolar assembly/sort 98.2 0.00024 5.2E-09 66.5 17.7 154 206-383 93-256 (933)
317 PRK11138 outer membrane biogen 98.2 0.0022 4.8E-08 58.2 24.0 132 246-407 257-389 (394)
318 KOG1275 PAB-dependent poly(A) 98.2 4.8E-05 1E-09 71.4 13.1 184 126-369 147-341 (1118)
319 KOG1008 Uncharacterized conser 98.1 3.2E-06 6.9E-11 75.9 3.6 211 36-314 57-276 (783)
320 PF13360 PQQ_2: PQQ-like domai 98.0 0.0038 8.2E-08 52.2 21.3 194 126-376 36-235 (238)
321 KOG3621 WD40 repeat-containing 98.0 5.8E-05 1.2E-09 68.9 10.5 120 234-371 34-155 (726)
322 KOG1912 WD40 repeat protein [G 98.0 0.00051 1.1E-08 63.6 16.1 250 115-400 18-300 (1062)
323 KOG1832 HIV-1 Vpr-binding prot 98.0 1.4E-05 3.1E-10 74.6 6.1 140 230-398 1140-1282(1516)
324 COG0823 TolB Periplasmic compo 97.9 0.0014 2.9E-08 59.3 17.9 202 113-377 193-407 (425)
325 KOG2066 Vacuolar assembly/sort 97.9 0.00028 6E-09 65.6 12.6 139 198-379 52-195 (846)
326 PF06433 Me-amine-dh_H: Methyl 97.9 0.014 3.1E-07 50.0 21.9 263 38-382 38-331 (342)
327 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.018 3.9E-07 51.3 22.8 247 113-386 43-330 (353)
328 PF08553 VID27: VID27 cytoplas 97.8 0.0028 6.1E-08 60.9 18.3 153 126-313 493-647 (794)
329 KOG3617 WD40 and TPR repeat-co 97.8 0.0017 3.7E-08 61.1 16.1 111 35-211 14-129 (1416)
330 KOG1645 RING-finger-containing 97.8 0.0002 4.3E-09 61.1 9.3 79 229-316 189-269 (463)
331 KOG3621 WD40 repeat-containing 97.7 0.00082 1.8E-08 61.7 13.1 207 124-382 43-256 (726)
332 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.017 3.7E-07 46.9 21.0 71 47-154 63-133 (354)
333 KOG3617 WD40 and TPR repeat-co 97.7 0.00029 6.3E-09 65.9 9.9 109 116-263 19-132 (1416)
334 PRK02888 nitrous-oxide reducta 97.7 0.0043 9.3E-08 57.6 17.1 78 234-314 321-405 (635)
335 PRK11138 outer membrane biogen 97.7 0.015 3.3E-07 52.8 20.7 29 126-154 120-148 (394)
336 PF06977 SdiA-regulated: SdiA- 97.6 0.0083 1.8E-07 49.8 16.8 201 176-407 26-236 (248)
337 PF13360 PQQ_2: PQQ-like domai 97.6 0.028 6E-07 46.9 21.1 144 134-318 1-145 (238)
338 PF04053 Coatomer_WDAD: Coatom 97.6 0.0066 1.4E-07 55.1 17.3 138 174-371 35-174 (443)
339 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.0067 1.4E-07 54.1 16.7 33 35-68 42-74 (353)
340 PF04053 Coatomer_WDAD: Coatom 97.5 0.012 2.6E-07 53.5 17.8 219 113-406 33-256 (443)
341 smart00320 WD40 WD40 repeats. 97.5 0.00017 3.6E-09 40.1 4.0 31 33-63 10-40 (40)
342 KOG1275 PAB-dependent poly(A) 97.5 0.0037 8E-08 59.3 14.3 159 115-312 180-341 (1118)
343 KOG4640 Anaphase-promoting com 97.5 0.00077 1.7E-08 61.1 9.4 75 234-318 21-97 (665)
344 PF08553 VID27: VID27 cytoplas 97.5 0.0048 1E-07 59.4 15.0 103 247-370 544-647 (794)
345 KOG1008 Uncharacterized conser 97.5 9.9E-05 2.2E-09 66.7 3.4 209 113-371 57-276 (783)
346 COG3204 Uncharacterized protei 97.4 0.02 4.3E-07 47.6 15.6 204 176-407 90-298 (316)
347 PF04841 Vps16_N: Vps16, N-ter 97.4 0.11 2.3E-06 47.3 24.6 32 113-147 81-112 (410)
348 PRK02888 nitrous-oxide reducta 97.3 0.074 1.6E-06 49.7 20.3 80 283-371 321-405 (635)
349 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0012 2.5E-08 38.6 5.6 33 34-66 10-42 (47)
350 KOG4640 Anaphase-promoting com 97.3 0.0017 3.6E-08 59.0 9.1 80 34-151 19-99 (665)
351 COG0823 TolB Periplasmic compo 97.3 0.0032 6.9E-08 56.9 11.0 143 234-402 193-344 (425)
352 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.041 8.9E-07 38.7 13.2 66 236-314 2-72 (111)
353 smart00320 WD40 WD40 repeats. 97.2 0.00072 1.6E-08 37.4 3.9 33 278-311 8-40 (40)
354 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0028 6.1E-08 37.0 5.0 30 113-144 12-41 (47)
355 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.039 8.5E-07 38.8 11.0 30 115-144 2-33 (111)
356 KOG2444 WD40 repeat protein [G 96.9 0.0026 5.6E-08 50.5 5.7 104 244-370 69-177 (238)
357 KOG2395 Protein involved in va 96.9 0.032 7E-07 50.1 12.9 143 198-370 349-500 (644)
358 PF00780 CNH: CNH domain; Int 96.7 0.31 6.6E-06 41.8 24.6 123 234-382 139-266 (275)
359 COG3490 Uncharacterized protei 96.6 0.33 7.1E-06 40.4 16.0 224 115-378 70-317 (366)
360 KOG2079 Vacuolar assembly/sort 96.6 0.0073 1.6E-07 58.6 7.3 97 296-408 100-201 (1206)
361 COG3391 Uncharacterized conser 96.5 0.57 1.2E-05 42.3 23.1 210 116-384 77-296 (381)
362 KOG4499 Ca2+-binding protein R 96.5 0.29 6.3E-06 39.5 14.3 139 233-390 108-260 (310)
363 KOG1916 Nuclear protein, conta 96.5 0.0039 8.4E-08 59.2 4.7 129 234-376 181-328 (1283)
364 KOG2079 Vacuolar assembly/sort 96.4 0.016 3.5E-07 56.4 8.6 105 244-371 98-204 (1206)
365 PF02897 Peptidase_S9_N: Proly 96.3 0.44 9.5E-06 43.7 17.4 115 235-371 125-261 (414)
366 PRK13616 lipoprotein LpqB; Pro 96.3 0.69 1.5E-05 44.1 18.7 112 176-309 452-564 (591)
367 KOG2395 Protein involved in va 96.3 0.19 4.1E-06 45.4 13.8 116 115-262 378-500 (644)
368 PF08596 Lgl_C: Lethal giant l 96.3 0.28 6.1E-06 44.2 15.2 82 230-313 83-173 (395)
369 PF03178 CPSF_A: CPSF A subuni 96.2 0.31 6.7E-06 42.9 15.2 140 205-370 62-202 (321)
370 COG3386 Gluconolactonase [Carb 96.2 0.77 1.7E-05 39.8 18.4 108 176-304 167-277 (307)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 1.1 2.4E-05 40.5 26.0 89 281-383 306-410 (415)
372 PF10313 DUF2415: Uncharacteri 96.0 0.04 8.7E-07 31.2 5.3 29 343-371 2-34 (43)
373 PF02897 Peptidase_S9_N: Proly 96.0 1.3 2.8E-05 40.7 25.6 246 37-371 125-405 (414)
374 PF05694 SBP56: 56kDa selenium 95.9 1.2 2.5E-05 40.0 20.4 122 252-379 220-351 (461)
375 PF10313 DUF2415: Uncharacteri 95.9 0.041 8.8E-07 31.1 5.1 33 283-315 1-35 (43)
376 COG3204 Uncharacterized protei 95.8 0.97 2.1E-05 38.0 15.3 173 113-315 86-265 (316)
377 PF10168 Nup88: Nuclear pore c 95.7 0.56 1.2E-05 45.7 15.4 91 283-380 85-189 (717)
378 PF12234 Rav1p_C: RAVE protein 95.7 0.57 1.2E-05 44.4 14.7 117 236-371 32-157 (631)
379 PRK13616 lipoprotein LpqB; Pro 95.6 1.1 2.5E-05 42.8 16.5 128 236-377 399-532 (591)
380 COG3490 Uncharacterized protei 95.5 0.29 6.2E-06 40.7 10.5 103 236-360 70-180 (366)
381 PF00780 CNH: CNH domain; Int 95.4 1.5 3.3E-05 37.4 19.9 123 236-376 38-170 (275)
382 TIGR02604 Piru_Ver_Nterm putat 95.3 0.84 1.8E-05 41.0 14.3 67 234-302 72-142 (367)
383 KOG4649 PQQ (pyrrolo-quinoline 95.2 1.4 3.1E-05 36.3 13.7 66 244-318 62-128 (354)
384 PF03178 CPSF_A: CPSF A subuni 95.2 2 4.2E-05 37.8 20.9 205 34-310 25-262 (321)
385 PF08728 CRT10: CRT10; InterP 95.1 1.8 3.9E-05 41.7 16.0 112 244-369 113-245 (717)
386 PF15390 DUF4613: Domain of un 95.1 0.57 1.2E-05 43.3 12.1 117 234-370 57-186 (671)
387 PF15390 DUF4613: Domain of un 95.0 1.2 2.6E-05 41.3 13.9 50 347-396 344-396 (671)
388 COG3391 Uncharacterized conser 94.9 2.8 6.2E-05 37.8 22.3 203 39-318 77-288 (381)
389 PF12234 Rav1p_C: RAVE protein 94.8 1.1 2.4E-05 42.6 13.8 90 13-144 15-104 (631)
390 PF07995 GSDH: Glucose / Sorbo 94.8 0.8 1.7E-05 40.4 12.5 116 235-359 3-131 (331)
391 PF10647 Gmad1: Lipoprotein Lp 94.7 2.3 5.1E-05 35.8 16.9 112 235-359 67-183 (253)
392 KOG1897 Damage-specific DNA bi 94.6 5.4 0.00012 39.6 25.8 102 285-403 777-889 (1096)
393 cd00216 PQQ_DH Dehydrogenases 94.5 4.2 9.1E-05 38.2 22.5 29 352-381 405-434 (488)
394 PHA02713 hypothetical protein; 94.5 1.5 3.2E-05 41.9 14.3 66 244-317 463-537 (557)
395 PF07569 Hira: TUP1-like enhan 94.5 0.38 8.2E-06 39.4 9.0 79 290-371 18-96 (219)
396 KOG2444 WD40 repeat protein [G 94.4 0.083 1.8E-06 42.3 4.8 101 199-314 74-178 (238)
397 KOG2377 Uncharacterized conser 94.1 2.7 5.9E-05 37.7 13.6 118 232-371 65-186 (657)
398 PF06433 Me-amine-dh_H: Methyl 94.0 3.8 8.3E-05 35.7 18.8 72 238-318 242-325 (342)
399 PF14583 Pectate_lyase22: Olig 93.9 4.4 9.5E-05 36.0 17.0 105 282-402 187-301 (386)
400 KOG1898 Splicing factor 3b, su 93.9 6.1 0.00013 39.5 16.7 130 253-407 911-1043(1205)
401 COG3386 Gluconolactonase [Carb 93.9 4 8.7E-05 35.4 20.2 135 234-389 111-260 (307)
402 PF07995 GSDH: Glucose / Sorbo 93.8 4.5 9.7E-05 35.8 19.7 70 283-365 253-330 (331)
403 TIGR03606 non_repeat_PQQ dehyd 93.5 3.3 7.2E-05 38.0 13.8 60 234-294 30-90 (454)
404 PF10214 Rrn6: RNA polymerase 93.5 9 0.00019 38.4 21.9 74 234-314 204-277 (765)
405 KOG3630 Nuclear pore complex, 93.4 3.7 7.9E-05 41.4 14.4 88 199-300 172-260 (1405)
406 PF10168 Nup88: Nuclear pore c 93.2 7.6 0.00017 38.2 16.5 83 234-316 85-182 (717)
407 PF12657 TFIIIC_delta: Transcr 92.8 3.1 6.6E-05 32.7 11.2 33 113-145 86-122 (173)
408 PF14583 Pectate_lyase22: Olig 92.8 6.8 0.00015 34.9 18.2 104 232-358 186-299 (386)
409 COG5167 VID27 Protein involved 92.4 4.2 9.1E-05 37.2 12.3 101 250-371 532-633 (776)
410 PF08728 CRT10: CRT10; InterP 92.3 12 0.00025 36.5 17.9 74 234-312 164-245 (717)
411 KOG4441 Proteins containing BT 91.9 7.8 0.00017 37.1 14.6 30 125-154 380-414 (571)
412 PF12657 TFIIIC_delta: Transcr 91.7 1.5 3.3E-05 34.4 8.3 31 284-314 87-122 (173)
413 PF05694 SBP56: 56kDa selenium 91.7 2.6 5.6E-05 37.9 10.2 68 234-301 312-392 (461)
414 COG4590 ABC-type uncharacteriz 91.4 0.82 1.8E-05 40.8 6.9 31 342-372 358-388 (733)
415 PF14655 RAB3GAP2_N: Rab3 GTPa 91.4 3.9 8.4E-05 37.1 11.4 36 34-69 306-341 (415)
416 PF10647 Gmad1: Lipoprotein Lp 91.3 8.1 0.00018 32.6 21.3 159 37-258 25-192 (253)
417 KOG2377 Uncharacterized conser 90.9 8 0.00017 34.9 12.3 129 236-385 25-155 (657)
418 PF07569 Hira: TUP1-like enhan 90.8 1.5 3.2E-05 36.0 7.6 73 241-316 18-98 (219)
419 PF03022 MRJP: Major royal jel 90.6 9.1 0.0002 33.0 12.6 130 236-371 3-160 (287)
420 PLN00033 photosystem II stabil 90.3 14 0.0003 33.6 16.0 113 233-367 280-396 (398)
421 PF14870 PSII_BNR: Photosynthe 90.1 12 0.00026 32.5 27.3 126 233-381 144-270 (302)
422 KOG3630 Nuclear pore complex, 90.0 6.7 0.00015 39.7 12.1 102 235-358 157-260 (1405)
423 KOG1900 Nuclear pore complex, 90.0 6.4 0.00014 40.4 12.2 81 232-315 177-274 (1311)
424 KOG4441 Proteins containing BT 89.6 20 0.00044 34.4 18.8 30 126-155 333-368 (571)
425 KOG4460 Nuclear pore complex, 89.5 8.6 0.00019 35.4 11.6 93 284-384 105-211 (741)
426 PRK10115 protease 2; Provision 89.1 25 0.00054 34.8 18.3 112 234-370 127-255 (686)
427 KOG2247 WD40 repeat-containing 89.0 0.11 2.3E-06 46.5 -0.3 136 176-359 39-177 (615)
428 PF04841 Vps16_N: Vps16, N-ter 89.0 18 0.0004 33.1 23.8 54 234-294 217-271 (410)
429 PF14761 HPS3_N: Hermansky-Pud 88.8 11 0.00024 30.4 15.9 153 199-370 32-214 (215)
430 PF14870 PSII_BNR: Photosynthe 88.7 15 0.00033 31.8 22.7 117 232-367 185-301 (302)
431 KOG1916 Nuclear protein, conta 88.6 0.74 1.6E-05 44.7 4.7 97 12-144 153-265 (1283)
432 PF14781 BBS2_N: Ciliary BBSom 88.3 8.4 0.00018 28.4 12.4 105 240-370 5-125 (136)
433 TIGR03118 PEPCTERM_chp_1 conse 87.6 17 0.00037 31.2 20.9 249 115-396 25-307 (336)
434 TIGR02604 Piru_Ver_Nterm putat 86.5 24 0.00052 31.7 14.5 111 234-359 14-141 (367)
435 PF10214 Rrn6: RNA polymerase 86.4 30 0.00065 34.8 14.7 140 232-372 78-234 (765)
436 PF13449 Phytase-like: Esteras 85.6 25 0.00054 31.0 16.5 164 234-403 20-234 (326)
437 PF13449 Phytase-like: Esteras 85.5 19 0.00041 31.8 11.6 125 236-370 87-249 (326)
438 PHA02713 hypothetical protein; 84.5 30 0.00066 33.2 13.3 26 126-151 304-335 (557)
439 KOG2247 WD40 repeat-containing 84.4 0.21 4.5E-06 44.8 -1.0 140 117-304 39-179 (615)
440 TIGR03606 non_repeat_PQQ dehyd 84.4 34 0.00074 31.6 16.6 33 35-67 29-61 (454)
441 TIGR02276 beta_rpt_yvtn 40-res 84.0 5.2 0.00011 22.2 5.2 31 351-382 1-33 (42)
442 PF07676 PD40: WD40-like Beta 84.0 4.6 0.0001 22.2 4.8 30 281-310 7-38 (39)
443 PF11715 Nup160: Nucleoporin N 83.4 7.7 0.00017 37.1 9.0 75 243-318 156-253 (547)
444 PHA02790 Kelch-like protein; P 82.9 42 0.00092 31.5 15.2 26 126-151 319-346 (480)
445 PF02333 Phytase: Phytase; In 82.3 37 0.00081 30.5 22.2 113 198-315 174-292 (381)
446 KOG1897 Damage-specific DNA bi 81.8 62 0.0013 32.7 26.6 113 240-371 494-614 (1096)
447 PHA03098 kelch-like protein; P 81.6 50 0.0011 31.5 17.0 26 126-151 343-373 (534)
448 TIGR02276 beta_rpt_yvtn 40-res 81.5 5.6 0.00012 22.1 4.7 27 292-318 1-27 (42)
449 cd00216 PQQ_DH Dehydrogenases 81.4 48 0.0011 31.2 25.2 29 127-155 111-139 (488)
450 PF11715 Nup160: Nucleoporin N 81.0 13 0.00028 35.6 9.6 41 115-155 217-259 (547)
451 KOG2280 Vacuolar assembly/sort 80.6 60 0.0013 31.7 14.6 34 282-316 216-249 (829)
452 COG4590 ABC-type uncharacteriz 80.5 6.1 0.00013 35.6 6.4 31 235-265 359-389 (733)
453 KOG4460 Nuclear pore complex, 80.1 11 0.00024 34.7 7.9 90 35-149 103-203 (741)
454 PRK13684 Ycf48-like protein; P 79.6 44 0.00096 29.6 18.4 118 233-370 214-331 (334)
455 KOG4499 Ca2+-binding protein R 79.5 33 0.00073 28.2 18.1 98 236-351 160-263 (310)
456 PF05096 Glu_cyclase_2: Glutam 77.9 41 0.0009 28.4 20.3 192 38-302 47-250 (264)
457 PF11635 Med16: Mediator compl 76.9 86 0.0019 31.5 18.0 74 233-308 259-345 (753)
458 KOG2280 Vacuolar assembly/sort 76.5 80 0.0017 31.0 17.3 137 235-380 85-255 (829)
459 PF03088 Str_synth: Strictosid 76.2 9.9 0.00021 25.9 5.1 43 301-360 33-75 (89)
460 COG4257 Vgb Streptogramin lyas 75.7 49 0.0011 28.1 17.1 221 122-407 69-290 (353)
461 PF12768 Rax2: Cortical protei 74.9 54 0.0012 28.2 10.4 56 253-317 15-76 (281)
462 COG5167 VID27 Protein involved 73.4 68 0.0015 29.9 10.8 67 236-313 565-632 (776)
463 PF05096 Glu_cyclase_2: Glutam 72.8 58 0.0012 27.6 13.6 119 235-382 46-168 (264)
464 PF14781 BBS2_N: Ciliary BBSom 72.7 36 0.00079 25.2 9.6 74 233-315 47-127 (136)
465 TIGR03074 PQQ_membr_DH membran 71.9 1.2E+02 0.0025 30.6 13.6 23 296-318 261-283 (764)
466 PF12341 DUF3639: Protein of u 70.8 12 0.00026 18.9 3.4 26 113-142 2-27 (27)
467 PF02333 Phytase: Phytase; In 70.4 83 0.0018 28.4 20.4 217 126-381 68-301 (381)
468 TIGR03118 PEPCTERM_chp_1 conse 69.3 76 0.0016 27.5 20.8 59 252-318 220-284 (336)
469 TIGR03032 conserved hypothetic 68.4 81 0.0018 27.5 17.0 74 286-381 206-300 (335)
470 KOG3522 Predicted guanine nucl 67.6 34 0.00074 33.7 8.2 74 281-371 625-698 (925)
471 smart00564 PQQ beta-propeller 66.7 16 0.00035 18.8 4.3 24 128-151 8-31 (33)
472 PF14761 HPS3_N: Hermansky-Pud 65.6 73 0.0016 25.9 15.8 160 128-312 30-213 (215)
473 COG5290 IkappaB kinase complex 65.2 1.5E+02 0.0033 29.5 12.1 30 35-64 112-141 (1243)
474 PF01436 NHL: NHL repeat; Int 64.2 17 0.00037 18.2 4.6 25 285-310 4-28 (28)
475 PF14727 PHTB1_N: PTHB1 N-term 63.7 1.2E+02 0.0026 27.8 12.7 111 197-316 39-166 (418)
476 PLN00033 photosystem II stabil 62.9 1.2E+02 0.0027 27.6 17.7 123 236-380 241-364 (398)
477 PF01731 Arylesterase: Arylest 62.6 32 0.00068 23.3 5.3 29 343-371 55-85 (86)
478 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.1 1.6E+02 0.0034 28.3 24.7 32 352-384 471-503 (527)
479 PRK13684 Ycf48-like protein; P 61.0 1.2E+02 0.0026 26.9 30.1 125 233-380 172-296 (334)
480 PF11635 Med16: Mediator compl 60.7 1.9E+02 0.0042 29.2 19.5 78 283-365 260-345 (753)
481 COG5290 IkappaB kinase complex 59.9 53 0.0011 32.4 7.9 46 352-399 517-563 (1243)
482 PF14779 BBS1: Ciliary BBSome 58.5 78 0.0017 26.7 7.9 73 282-367 176-255 (257)
483 KOG1900 Nuclear pore complex, 58.1 2.6E+02 0.0055 29.8 13.2 89 281-373 177-275 (1311)
484 PHA03098 kelch-like protein; P 56.7 1.9E+02 0.004 27.7 16.4 26 126-151 295-326 (534)
485 PRK10115 protease 2; Provision 56.2 2.2E+02 0.0048 28.4 27.8 33 36-68 127-164 (686)
486 TIGR02608 delta_60_rpt delta-6 55.9 45 0.00097 20.3 4.8 36 344-379 3-44 (55)
487 PF01731 Arylesterase: Arylest 55.8 59 0.0013 22.0 5.7 29 234-262 54-84 (86)
488 PF03022 MRJP: Major royal jel 54.8 1.4E+02 0.0031 25.8 18.2 61 235-301 187-253 (287)
489 KOG3616 Selective LIM binding 54.5 35 0.00075 33.2 5.8 66 234-311 15-81 (1636)
490 PF01011 PQQ: PQQ enzyme repea 54.2 35 0.00075 18.6 4.8 29 128-156 2-30 (38)
491 TIGR03075 PQQ_enz_alc_DH PQQ-d 50.8 2.3E+02 0.0051 27.1 11.9 68 247-318 71-143 (527)
492 KOG1983 Tomosyn and related SN 50.6 3.2E+02 0.007 28.7 18.0 32 36-67 36-67 (993)
493 PF15525 DUF4652: Domain of un 50.6 1.3E+02 0.0027 24.0 8.8 82 305-400 88-177 (200)
494 COG5276 Uncharacterized conser 50.5 1.7E+02 0.0036 25.4 14.3 142 199-371 100-242 (370)
495 PF13570 PQQ_3: PQQ-like domai 49.8 29 0.00063 19.1 3.0 20 126-145 21-40 (40)
496 KOG3616 Selective LIM binding 49.4 62 0.0013 31.7 6.6 34 282-316 14-47 (1636)
497 COG3823 Glutamine cyclotransfe 47.6 1.5E+02 0.0034 24.1 13.3 22 281-302 227-248 (262)
498 PF08801 Nucleoporin_N: Nup133 47.1 2.3E+02 0.0051 26.0 12.9 32 283-315 190-221 (422)
499 PHA02790 Kelch-like protein; P 44.6 2.8E+02 0.006 26.2 12.6 26 126-151 363-391 (480)
500 PF03088 Str_synth: Strictosid 43.8 71 0.0015 21.8 4.6 44 199-251 31-74 (89)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-44 Score=292.38 Aligned_cols=282 Identities=19% Similarity=0.267 Sum_probs=242.4
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
..++...+|..+.|+.+++.||||+.+|.++||+..+.. .+..|.+|.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~--------- 217 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT--------- 217 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc---------
Confidence 446678899999999999999999999999999986553 568899999
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|.++.|+|..++..+|+|+.||++++|++.+...+..+..|... |. .++|+|+|++|
T Consensus 218 ---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R--------Vs-------~VafHPsG~~L--- 276 (459)
T KOG0272|consen 218 ---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR--------VS-------RVAFHPSGKFL--- 276 (459)
T ss_pred ---cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh--------he-------eeeecCCCcee---
Confidence 7799999999755678999999999999999998877777776543 33 78999999998
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
.+++.|.+-++|| +....... ...+|...|.+++|+|||.++++| -|..-+|||++++...+
T Consensus 277 ---------~TasfD~tWRlWD-~~tk~ElL-------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im 339 (459)
T KOG0272|consen 277 ---------GTASFDSTWRLWD-LETKSELL-------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM 339 (459)
T ss_pred ---------eecccccchhhcc-cccchhhH-------hhcccccccceeEecCCCceeeccCccchhheeecccCcEEE
Confidence 9999999999999 54322111 138999999999999999999999 89999999999655544
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
. +.+|...|.+++|+|+| +.||+|+.|++++|||++..+.+ +++.+| +.-|+.|.
T Consensus 340 ~--------L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~l----y~ipAH------------~nlVS~Vk 394 (459)
T KOG0272|consen 340 F--------LAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSEL----YTIPAH------------SNLVSQVK 394 (459)
T ss_pred E--------ecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccc----eecccc------------cchhhheE
Confidence 3 68899999999999999 99999999999999999987553 666666 57899999
Q ss_pred Ecc-CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee---eeeceeeec
Q 015363 349 FAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIHTLY 407 (408)
Q Consensus 349 ~sp-dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~ 407 (408)
|+| .|.+|+|++ |++++||...+ ..+++++.||++..-.+...+++++| +.||--.||
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~-~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRT-WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCC-cccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 999 789999997 79999999998 79999999999999999888888876 457666555
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-43 Score=285.37 Aligned_cols=295 Identities=16% Similarity=0.291 Sum_probs=244.8
Q ss_pred ccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceee
Q 015363 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (408)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 94 (408)
-.|++.. +..-..-.+|..+|.|++|+|||+.||+|+.||.|++||.++++. .-.
T Consensus 140 R~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----------------------~g~ 194 (480)
T KOG0271|consen 140 RLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----------------------IGR 194 (480)
T ss_pred EeeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------ccc
Confidence 3466664 222223467999999999999999999999999999999988875 345
Q ss_pred eeccCCcccccccccccccceeEEEEee---cCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (408)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p---~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (408)
.+.+|. ..|++++|.| .++..+||+++.||.++|||+..+.++..+..|..+ |.
T Consensus 195 ~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--------VT--- 251 (480)
T KOG0271|consen 195 ALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--------VT--- 251 (480)
T ss_pred cccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--------eE---
Confidence 688999 7899999987 355679999999999999999999999988887654 33
Q ss_pred CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC---------
Q 015363 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN--------- 242 (408)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--------- 242 (408)
++.|--+|- +++++.|++|++|+ .. .+.+.+.+ .+|..+|+.++.+
T Consensus 252 ----CvrwGG~gl-------------iySgS~DrtIkvw~-a~------dG~~~r~l-kGHahwvN~lalsTdy~LRtga 306 (480)
T KOG0271|consen 252 ----CVRWGGEGL-------------IYSGSQDRTIKVWR-AL------DGKLCREL-KGHAHWVNHLALSTDYVLRTGA 306 (480)
T ss_pred ----EEEEcCCce-------------EEecCCCceEEEEE-cc------chhHHHhh-cccchheeeeeccchhhhhccc
Confidence 667766664 39999999999999 32 24555554 8999999998876
Q ss_pred --CCCC-------------------------EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC
Q 015363 243 --SDGE-------------------------TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 294 (408)
Q Consensus 243 --~~~~-------------------------~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 294 (408)
|.++ .|++| +|.++.+|+-....+++.. +.+|..-|..+.|+||+
T Consensus 307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r-------mtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR-------MTGHQALVNHVSFSPDG 379 (480)
T ss_pred cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh-------hhchhhheeeEEECCCc
Confidence 3333 49999 9999999998877766643 78999999999999999
Q ss_pred CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCC
Q 015363 295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDS 373 (408)
Q Consensus 295 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~ 373 (408)
+++|+++-|..|++||.++|+.+ .+|.+| .+.|..++|+.|.++|++|+ |.++++|++++ .
T Consensus 380 -r~IASaSFDkSVkLW~g~tGk~l----asfRGH------------v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-k 441 (480)
T KOG0271|consen 380 -RYIASASFDKSVKLWDGRTGKFL----ASFRGH------------VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-K 441 (480)
T ss_pred -cEEEEeecccceeeeeCCCcchh----hhhhhc------------cceeEEEEeccCccEEEEcCCCceEEEEEeee-e
Confidence 99999999999999999999765 566666 68999999999999999997 89999999998 7
Q ss_pred CceeeeeecccccceEEecCCCeeeee---eceeeec
Q 015363 374 GPVATFQVHEHLRPKVMHSSKNYFMGL---DNIHTLY 407 (408)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~ 407 (408)
++...+.||..+...+.-.-++..++- |+..+||
T Consensus 442 Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 442 KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred eecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 999999999999999988778877644 5655554
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-41 Score=271.30 Aligned_cols=272 Identities=16% Similarity=0.218 Sum_probs=219.9
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+|.++|.|++|+|+|..||+|+-|.++|+||+.+... +.+.++|.
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----------------------~~t~KgH~--------- 157 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----------------------LFTCKGHK--------- 157 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----------------------ceeecCCc---------
Confidence 3458999999999999999999999999999999988763 46788998
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-EEeccCCCCcccCCCCCeEeecCCceeeEEcc-----CC
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-----NG 183 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~ 183 (408)
..|.|++|+|+ |+.||+|+.||+|++||.++++.. ..+..|.. .|. +++|.| ..
T Consensus 158 ---~WVlcvawsPD--gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K--------~It-------~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 158 ---NWVLCVAWSPD--GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK--------WIT-------ALAWEPLHLVPPC 217 (480)
T ss_pred ---cEEEEEEECCC--cchhhccccCCeEEEecCCCCCcccccccCccc--------cee-------EEeecccccCCCc
Confidence 77999999755 999999999999999999987653 33444322 343 566654 44
Q ss_pred CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (408)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (408)
+.+ ++++.||.+++|| + ..+.++..+ .+|...|+|+.|--+| ++++| .|++|++|+..
T Consensus 218 r~l------------as~skDg~vrIWd-~------~~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 218 RRL------------ASSSKDGSVRIWD-T------KLGTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL 276 (480)
T ss_pred cce------------ecccCCCCEEEEE-c------cCceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc
Confidence 444 9999999999999 3 234555554 8999999999997655 78888 89999999998
Q ss_pred CCCceeeEeecCCCcccCCcCCeEEEEEc-----------CCC------------------------CceEEEEeCCCeE
Q 015363 263 ISNQSFNIVDVKPANMEDLTEVITSAEFH-----------PTH------------------------CNMLAYSSSKGSI 307 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~~------------------------~~~l~s~~~dg~i 307 (408)
. +.+.+. +.+|..+|+.++.+ |.+ +..|++|+.|.++
T Consensus 277 d-G~~~r~-------lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl 348 (480)
T KOG0271|consen 277 D-GKLCRE-------LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL 348 (480)
T ss_pred c-hhHHHh-------hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence 4 444433 78999999998876 333 1359999999999
Q ss_pred EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccccc
Q 015363 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (408)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~ 386 (408)
.+|+-...+ +|+..+.+| +.-|+.+.||||+++||+++ |..|++||.++ |+.+.+|+||-+..
T Consensus 349 flW~p~~~k---kpi~rmtgH------------q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V 412 (480)
T KOG0271|consen 349 FLWNPFKSK---KPITRMTGH------------QALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV 412 (480)
T ss_pred EEecccccc---cchhhhhch------------hhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee
Confidence 999876554 333455555 68899999999999999997 89999999998 89999999999998
Q ss_pred ceEEecCCCeee
Q 015363 387 PKVMHSSKNYFM 398 (408)
Q Consensus 387 ~~~~~~~~~~~~ 398 (408)
+.+.-..+..++
T Consensus 413 YqvawsaDsRLl 424 (480)
T KOG0271|consen 413 YQVAWSADSRLL 424 (480)
T ss_pred EEEEeccCccEE
Confidence 888776666654
No 4
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-42 Score=274.72 Aligned_cols=330 Identities=66% Similarity=1.039 Sum_probs=284.7
Q ss_pred cccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCc
Q 015363 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (408)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (408)
.+...+.|+|.|.|+.. ++..+-|.++.|..+|.+||||..+|+|.++....... .+
T Consensus 5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~e 61 (433)
T KOG1354|consen 5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GE 61 (433)
T ss_pred Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cc
Confidence 34567889999988743 66778899999999999999999999999998654321 27
Q ss_pred cceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEe
Q 015363 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (408)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (408)
|++...++.|+++|+|+++++++.+|+.++|++..+...++..+.|.+|++|.+........ ..+...
T Consensus 62 y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~-~~~~~~----------- 129 (433)
T KOG1354|consen 62 YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKE-GYNLPE----------- 129 (433)
T ss_pred eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccc-cccccc-----------
Confidence 78899999999999999999999999999999988888999999999999999986543330 000000
Q ss_pred ecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (408)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (408)
. ...+.-..+++.. +...+......|++.+..+|...|++|.++.|+..++
T Consensus 130 ------------~----------------~~~~~~~~lr~p~-~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 130 ------------E----------------GPPGTITSLRLPV-EGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred ------------c----------------CCCCccceeecee-eccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 0 0112223444444 5666667778888998899999999999999999999
Q ss_pred EecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363 250 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (408)
Q Consensus 250 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (408)
+++|-+|.+|+++-..+.+++++++|..+......|++..|+|...++|+..+..|+|++-|+|...+|++..+.++.++
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 99999999999999999999999999999888899999999999889999999999999999999999999999999999
Q ss_pred CCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeecee
Q 015363 330 APGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIH 404 (408)
Q Consensus 330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 404 (408)
.+..+.+|.+..+.|.++.|+++|+||++-+.-+|++||++.+.+++.+++.|...+..+|++|++|++ +|+|.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I-fdKFe 334 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI-FDKFE 334 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch-hheeE
Confidence 999999999999999999999999999999989999999988899999999999999999999999985 35443
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-39 Score=268.41 Aligned_cols=258 Identities=16% Similarity=0.274 Sum_probs=219.5
Q ss_pred cCcccceeeecccCcCcccceeeccceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCc
Q 015363 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (408)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (408)
+....|+..++ . ....+.+|.+.|.++.|+|. +.-||||+.||++++|++++..
T Consensus 197 G~~kvW~~~~~-~--~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--------------------- 252 (459)
T KOG0272|consen 197 GLVKVWSVPQC-N--LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--------------------- 252 (459)
T ss_pred CceeEeecCCc-c--eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---------------------
Confidence 35567888776 2 23356789999999999996 6689999999999999998754
Q ss_pred cceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEe
Q 015363 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (408)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (408)
.+..+.+|. ..|..++|+|+ |++|++++.|.+-++||++++......++|.. .|+
T Consensus 253 --~l~~l~gH~------------~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~--------~v~- 307 (459)
T KOG0272|consen 253 --PLQDLEGHL------------ARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEGHSK--------GVF- 307 (459)
T ss_pred --chhhhhcch------------hhheeeeecCC--CceeeecccccchhhcccccchhhHhhccccc--------ccc-
Confidence 356789998 77999999766 99999999999999999999887666666533 344
Q ss_pred ecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (408)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (408)
.++|.+||..+ ++|+.|..-++|| ++. +.++-. +.+|...|.+|+|+|+|-.||
T Consensus 308 ------~iaf~~DGSL~------------~tGGlD~~~RvWD-lRt------gr~im~-L~gH~k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 308 ------SIAFQPDGSLA------------ATGGLDSLGRVWD-LRT------GRCIMF-LAGHIKEILSVAFSPNGYHLA 361 (459)
T ss_pred ------eeEecCCCcee------------eccCccchhheee-ccc------CcEEEE-ecccccceeeEeECCCceEEe
Confidence 79999999998 9999999999999 544 444444 489999999999999999999
Q ss_pred Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (408)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (408)
+| .|++++|||++ ......+ +.+|..-|+.++|+|...++|++++.|++++||..++...+ +++.||
T Consensus 362 Tgs~Dnt~kVWDLR-~r~~ly~-------ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~----ksLaGH 429 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLR-MRSELYT-------IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL----KSLAGH 429 (459)
T ss_pred ecCCCCcEEEeeec-cccccee-------cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc----hhhcCC
Confidence 99 99999999999 4444433 78999999999999954499999999999999999998654 888888
Q ss_pred cCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEE
Q 015363 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD 368 (408)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd 368 (408)
+ +.|.+++.+||+.+|++++ |+++++|.
T Consensus 430 e------------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 E------------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred c------------cceEEEEeccCCceEEEeccCceeeecc
Confidence 5 7899999999999999997 89999995
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=238.47 Aligned_cols=269 Identities=17% Similarity=0.283 Sum_probs=217.6
Q ss_pred ceeecc-ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 31 EVQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 31 ~~~h~~-~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.++|.+ .|+.+.+.|++++||+|+.. .|||||+.++... .+.++.+|.
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~---------------------Pv~t~e~h~--------- 83 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN---------------------PVATFEGHT--------- 83 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---------------------ceeEEeccC---------
Confidence 456765 59999999999999999865 8999999887642 567899998
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|+++.| ..+|.++++|++||+++|||++...+.+.++... .|. .+..+|+...|
T Consensus 84 ---kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s---------pVn-------~vvlhpnQteL--- 139 (311)
T KOG0315|consen 84 ---KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS---------PVN-------TVVLHPNQTEL--- 139 (311)
T ss_pred ---CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchhccCCC---------Ccc-------eEEecCCcceE---
Confidence 77999999 5679999999999999999999977666655532 233 67888888887
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
+++..+|.|++|| +.. ..|...+.......|+++++.|||.+++.+ ..|..++|++-......
T Consensus 140 ---------is~dqsg~irvWD-l~~------~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 140 ---------ISGDQSGNIRVWD-LGE------NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred ---------EeecCCCcEEEEE-ccC------CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 9999999999999 433 223333345555789999999999999999 89999999997543333
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
.+.++ ..++.|.+.+..+.+||++ ++||+++.|.+++||+....-.. ...+++| ..++.+++
T Consensus 204 ~l~P~--~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kl---e~~l~gh------------~rWvWdc~ 265 (311)
T KOG0315|consen 204 ELEPV--HKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKL---ELVLTGH------------QRWVWDCA 265 (311)
T ss_pred cceEh--hheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCceee---EEEeecC------------CceEEeee
Confidence 33332 2378899999999999999 99999999999999999876111 1445555 58999999
Q ss_pred EccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceE
Q 015363 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKV 389 (408)
Q Consensus 349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 389 (408)
||.||+||++|+ |+.+++|++.+ ++.++.+.+|.....+.
T Consensus 266 FS~dg~YlvTassd~~~rlW~~~~-~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 266 FSADGEYLVTASSDHTARLWDLSA-GKEVRQYQGHHKAAVCV 306 (311)
T ss_pred eccCccEEEecCCCCceeeccccc-CceeeecCCcccccEEE
Confidence 999999999995 79999999998 79999999997665444
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-37 Score=238.52 Aligned_cols=258 Identities=14% Similarity=0.231 Sum_probs=214.0
Q ss_pred cceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
...+|++.|+.++..+. ...++++++|.++.+|++..... +-...+..+.||+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs-------- 63 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS-------- 63 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc--------
Confidence 44689999999999987 56899999999999999876542 1334567789998
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..|..+..+++ |++.++++.|+++++||+.+++..+.+..|... |. ++++++|.+.+
T Consensus 64 ----H~v~dv~~s~d--g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d--------Vl-------sva~s~dn~qi-- 120 (315)
T KOG0279|consen 64 ----HFVSDVVLSSD--GNFALSASWDGTLRLWDLATGESTRRFVGHTKD--------VL-------SVAFSTDNRQI-- 120 (315)
T ss_pred ----eEecceEEccC--CceEEeccccceEEEEEecCCcEEEEEEecCCc--------eE-------EEEecCCCcee--
Confidence 66999999654 889999999999999999999888888877543 43 79999999998
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccc-cccceEEEEeCCC--CCEEEEe-cCCeEEEEeCCCC
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSD--GETFISA-DDLRINLWNLEIS 264 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~--~~~l~~~-~d~~i~iwd~~~~ 264 (408)
++|+.|++|++|+ ..+.|..+.... +...|.|+.|+|+ ..+++++ .|++|++||+++
T Consensus 121 ----------vSGSrDkTiklwn--------t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~- 181 (315)
T KOG0279|consen 121 ----------VSGSRDKTIKLWN--------TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN- 181 (315)
T ss_pred ----------ecCCCcceeeeee--------ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-
Confidence 9999999999999 234444444222 3789999999998 6788888 899999999994
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
.+... .+.+|.+.++.+.++||| .++++|+.||.+.+||++.++.+ +.+... ..|
T Consensus 182 ~~l~~-------~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~a~-------------~~v 236 (315)
T KOG0279|consen 182 CQLRT-------TFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLEAF-------------DIV 236 (315)
T ss_pred cchhh-------ccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----EeccCC-------------CeE
Confidence 33332 378899999999999999 99999999999999999998764 565554 689
Q ss_pred EEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeee
Q 015363 345 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 345 ~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
.+++|+|+..+|+.+.+..|+|||+.+ +..+..++.
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~ 272 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKL 272 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccc-hhhhhhccc
Confidence 999999998888888877899999997 677776654
No 8
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-38 Score=251.13 Aligned_cols=338 Identities=54% Similarity=0.813 Sum_probs=279.1
Q ss_pred cccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcccee
Q 015363 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (408)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 93 (408)
...|+|.|||+.......+...+.|+++.|...|.|||+|...|+|.+|...... .-+|++.
T Consensus 5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~------------------~ceykf~ 66 (460)
T COG5170 5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY------------------GCEYKFF 66 (460)
T ss_pred hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc------------------ccchhhh
Confidence 4579999999998887778899999999999999999999999999999865443 2378899
Q ss_pred eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (408)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (408)
+.|++|+.+|+|+++++++.+|+.+.|+...+...++..+.|++|++|.+.......+.+.+....
T Consensus 67 teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~-------------- 132 (460)
T COG5170 67 TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDS-------------- 132 (460)
T ss_pred hhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccc--------------
Confidence 999999999999999999999999999976566678889999999999998776555444433221
Q ss_pred ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecC
Q 015363 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 253 (408)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d 253 (408)
+. +|-+..+ .....+++.. +...+......+.+.+...|...++++.++.|...+++++|
T Consensus 133 ---~~-~~~~g~~---------------~s~~~l~lpr-ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDd 192 (460)
T COG5170 133 ---FH-SPMGGPL---------------TSTKELLLPR-LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADD 192 (460)
T ss_pred ---cc-cccCCCc---------------CCHHHhhccc-ccccceEEEeccceeccccceeEeeeeeecCchheeeeccc
Confidence 11 1111111 0112222222 33333333345555556889999999999999999999999
Q ss_pred CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCC
Q 015363 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (408)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (408)
-+|.+|+++....++.+++++|..+......|++..|+|....+++..+..|.|++-|+|...+|+.+-+.++....+-.
T Consensus 193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~ 272 (460)
T COG5170 193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD 272 (460)
T ss_pred eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence 99999999999999999999998888888889999999998889999999999999999999888877777777766777
Q ss_pred ccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeecee
Q 015363 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIH 404 (408)
Q Consensus 334 ~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 404 (408)
..+|.+..+.|.++.|+++|++|++.+.-+|++||++....++++++-|...+..++..|++|++ .|+|.
T Consensus 273 ~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai-fdkFe 342 (460)
T COG5170 273 VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI-FDKFE 342 (460)
T ss_pred chhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccce-eeeEE
Confidence 78888889999999999999999999989999999999999999999999999999999999985 35554
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.7e-36 Score=248.89 Aligned_cols=268 Identities=19% Similarity=0.341 Sum_probs=219.9
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
...+..|++++|+.+|.+||+|+.||.++||+..+.. ...+..|.
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------------~~tl~~Hk----------- 276 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------------ISTLGQHK----------- 276 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------------hhhhhccC-----------
Confidence 4456789999999999999999999999999987664 35677888
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
++|.++.|+ ..|++|++++.|+++.+||..+++..+.+.++..+. ..+.|-.+..+
T Consensus 277 -gPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~---------------lDVdW~~~~~F------ 332 (524)
T KOG0273|consen 277 -GPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA---------------LDVDWQSNDEF------ 332 (524)
T ss_pred -CceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc---------------cceEEecCceE------
Confidence 889999995 558999999999999999999999999888875441 14667666664
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
++++.|+.|+++. +.. ..+..++ .+|.+.|.++.|+|.+.+|+++ +|++++||+..... +..
T Consensus 333 -------~ts~td~~i~V~k-v~~------~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~- 395 (524)
T KOG0273|consen 333 -------ATSSTDGCIHVCK-VGE------DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVH- 395 (524)
T ss_pred -------eecCCCceEEEEE-ecC------CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-chh-
Confidence 8899999999987 422 3455555 7799999999999999999999 99999999987443 332
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCC--------ceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHC--------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (408)
.+..|...|..+.|+|.|+ ..+++++.|++|++||+..+..+ ..|..| +.
T Consensus 396 ------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~kH------------~~ 453 (524)
T KOG0273|consen 396 ------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMKH------------QE 453 (524)
T ss_pred ------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----EeeccC------------CC
Confidence 2788999999999999763 47899999999999999998554 555555 57
Q ss_pred eeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee
Q 015363 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG 399 (408)
Q Consensus 343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (408)
+|.+++|+|+|++||+|+ ||.|.+|+.++ ++.++.+.+..+ ...++.-..++.++
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~-Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGG-IFELCWNAAGDKLG 509 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccc-hheeEeecCCCe-EEEEEEcCCCCEEE
Confidence 899999999999999997 79999999998 799999988655 34444445555543
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=231.16 Aligned_cols=281 Identities=17% Similarity=0.313 Sum_probs=223.6
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+|.+.|.++.|++|.++|++++.||.+.|||.-+.... ..+.-..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s--------- 97 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS--------- 97 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc---------
Confidence 34689999999999999999999999999999997655421 1122222
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc------EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (408)
..|...+|+|+ |+++|+|+.|+...||++.+.+ ..+.+..| .+.+. ++.|.+|+
T Consensus 98 ---~WVMtCA~sPS--g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH--------tgylS-------cC~f~dD~ 157 (343)
T KOG0286|consen 98 ---SWVMTCAYSPS--GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH--------TGYLS-------CCRFLDDN 157 (343)
T ss_pred ---eeEEEEEECCC--CCeEEecCcCceeEEEecccccccccceeeeeecCc--------cceeE-------EEEEcCCC
Confidence 66999999877 8899999999999999998552 22222222 12222 56677766
Q ss_pred CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeC
Q 015363 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNL 261 (408)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~ 261 (408)
.. ++++.|.+..+|| +.. ++....+ .+|.+.|.+++++| +++.|++| -|+..++||+
T Consensus 158 ~i-------------lT~SGD~TCalWD-ie~------g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 158 HI-------------LTGSGDMTCALWD-IET------GQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred ce-------------EecCCCceEEEEE-ccc------ceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 54 8999999999999 433 4444554 89999999999999 89999999 8999999999
Q ss_pred CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (408)
+. ..+.+. +.+|...|.+++|.|+| .-|++|+.|++.++||+|....+ ..+..... .
T Consensus 217 R~-~~c~qt-------F~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~----a~ys~~~~----------~ 273 (343)
T KOG0286|consen 217 RS-GQCVQT-------FEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQEL----AVYSHDSI----------I 273 (343)
T ss_pred cC-cceeEe-------ecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEE----eeeccCcc----------c
Confidence 94 466654 78999999999999999 99999999999999999998654 34442211 3
Q ss_pred ceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeee---eceeeec
Q 015363 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGL---DNIHTLY 407 (408)
Q Consensus 342 ~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~ 407 (408)
.+|++++||-.|++|++| .|.++.+||.=. ++.+-.+.+|+...+++...-++..++- |.+.+||
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccc-cceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 689999999999999998 579999999987 7999999999999999987666665533 6666655
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-35 Score=262.40 Aligned_cols=264 Identities=18% Similarity=0.317 Sum_probs=213.6
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCC-Ccccccccccc-------cccCCCccceeeeeccCCcccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRRDLEMMDY-------SMSRHPEFRYKTEFQSHEPEFDYL 106 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~-------~~~~~p~~~~~~~~~~h~~~~~~~ 106 (408)
...++|..|++|+.+||.|-.|..|++|.+....... +....+...+. ..--.........+.||.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 3569999999999999999999999999988532110 00111111110 000111122234477888
Q ss_pred cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
++|....|+|+ .++|++++.|+++|+|.+.+..+....++|..| |+ .+.|+|-|-+.
T Consensus 452 ------GPVyg~sFsPd--~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--------Vw-------dV~F~P~GyYF 508 (707)
T KOG0263|consen 452 ------GPVYGCSFSPD--RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--------VW-------DVQFAPRGYYF 508 (707)
T ss_pred ------Cceeeeeeccc--ccceeeccCCcceeeeecccceeEEEecCCCcc--------ee-------eEEecCCceEE
Confidence 88999999866 779999999999999999999999888887554 66 68899999887
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (408)
++++.|++-++|. ... ..+.+.+ .+|...|.|++|+|+..++++| .|.+|++||+. .+
T Consensus 509 ------------atas~D~tArLWs-~d~------~~PlRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G 567 (707)
T KOG0263|consen 509 ------------ATASHDQTARLWS-TDH------NKPLRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TG 567 (707)
T ss_pred ------------EecCCCceeeeee-ccc------CCchhhh-cccccccceEEECCcccccccCCCCceEEEEEcC-CC
Confidence 9999999999999 322 5566665 8999999999999999999999 99999999999 45
Q ss_pred ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (408)
...++ +.+|.++|.+++|+|+| ++|++|+.|+.|++||+.+++.+ ..+.+| .+.|.
T Consensus 568 ~~VRi-------F~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v----~~l~~H------------t~ti~ 623 (707)
T KOG0263|consen 568 NSVRI-------FTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLV----KQLKGH------------TGTIY 623 (707)
T ss_pred cEEEE-------ecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcch----hhhhcc------------cCcee
Confidence 55555 78999999999999999 99999999999999999999765 677777 48899
Q ss_pred EEEEccCCCEEEEeC-CCeEEEEECCCC
Q 015363 346 DIKFARNGRHILSRD-YMTLKLWDINMD 372 (408)
Q Consensus 346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~ 372 (408)
++.||.||..||+|+ |++|++||+...
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999985 899999999763
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=225.77 Aligned_cols=268 Identities=13% Similarity=0.243 Sum_probs=202.1
Q ss_pred Ccccceeeec---ccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCc
Q 015363 13 QPLEWKFSQV---FGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (408)
Q Consensus 13 ~~~~w~~~~~---~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (408)
..+.|++..- ||.. .-...+|...|+.+..++||++.++++.|+++++||+.+++.
T Consensus 39 ~ii~W~L~~dd~~~G~~-~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-------------------- 97 (315)
T KOG0279|consen 39 TIIVWKLTSDDIKYGVP-VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-------------------- 97 (315)
T ss_pred EEEEEEeccCccccCce-eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE--------------------
Confidence 3456777753 2221 113457999999999999999999999999999999998753
Q ss_pred cceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEe
Q 015363 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (408)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (408)
...|.+|. ..|.+++|+|+ ...+++|++|++|++|++............. .+.|.
T Consensus 98 ---t~~f~GH~------------~dVlsva~s~d--n~qivSGSrDkTiklwnt~g~ck~t~~~~~~-------~~WVs- 152 (315)
T KOG0279|consen 98 ---TRRFVGHT------------KDVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH-------REWVS- 152 (315)
T ss_pred ---EEEEEecC------------CceEEEEecCC--CceeecCCCcceeeeeeecccEEEEEecCCC-------cCcEE-
Confidence 46799999 67999999654 7899999999999999998765444333321 22444
Q ss_pred ecCCceeeEEccCC--CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCE
Q 015363 170 SHVSAIPKSYMANG--GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (408)
Q Consensus 170 ~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (408)
++.|+|+. .. +++++.|++|++|| +.+.+.. .. +.+|.+.++.++++|||.+
T Consensus 153 ------cvrfsP~~~~p~------------Ivs~s~DktvKvWn-l~~~~l~------~~-~~gh~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 153 ------CVRFSPNESNPI------------IVSASWDKTVKVWN-LRNCQLR------TT-FIGHSGYVNTVTVSPDGSL 206 (315)
T ss_pred ------EEEEcCCCCCcE------------EEEccCCceEEEEc-cCCcchh------hc-cccccccEEEEEECCCCCE
Confidence 79999985 44 49999999999999 6553332 22 4789999999999999999
Q ss_pred EEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc
Q 015363 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (408)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (408)
.++| .||.+.+||++.++.+.. -+|...|.+++|+|+. ..|+.+ .+..|+|||+.++..+ ..+.
T Consensus 207 casGgkdg~~~LwdL~~~k~lys---------l~a~~~v~sl~fspnr-ywL~~a-t~~sIkIwdl~~~~~v----~~l~ 271 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYS---------LEAFDIVNSLCFSPNR-YWLCAA-TATSIKIWDLESKAVV----EELK 271 (315)
T ss_pred EecCCCCceEEEEEccCCceeEe---------ccCCCeEeeEEecCCc-eeEeec-cCCceEEEeccchhhh----hhcc
Confidence 9999 999999999996655432 3578889999999997 666665 4566999999998655 2222
Q ss_pred cccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDIN 370 (408)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~ 370 (408)
...... ......-.-.+++|++||..|++| .|+.|++|.+.
T Consensus 272 ~d~~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 272 LDGIGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 211000 001111235678999999999999 68999999985
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-35 Score=238.47 Aligned_cols=264 Identities=15% Similarity=0.272 Sum_probs=223.4
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
..+|..+|+.+-|+|+-.++++++.|++|++||..+++ +...++||+
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----------------------~e~~LrGHt---------- 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----------------------LERSLRGHT---------- 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----------------------hhhhhhccc----------
Confidence 35699999999999999999999999999999999876 357899999
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|.+|+|. ..|.++++++.|=.+++||..+ .++.+....+.+. +. ++.+.|.|..+
T Consensus 151 --~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~--------vS-------~V~f~P~gd~i--- 208 (406)
T KOG0295|consen 151 --DSVFDISFD--ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG--------VS-------SVFFLPLGDHI--- 208 (406)
T ss_pred --cceeEEEEe--cCccEEEecCCccchhheeHHHHHHHHHHhcCcccc--------ee-------eEEEEecCCee---
Confidence 779999995 4589999999999999999987 3344433333321 22 68899999887
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
++++.|.+|+.|+ + ..+.|++++ .+|...|+.++.+.||.++|++ .|.+|++|-+.+ +++.
T Consensus 209 ---------lS~srD~tik~We-~------~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k 270 (406)
T KOG0295|consen 209 ---------LSCSRDNTIKAWE-C------DTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCK 270 (406)
T ss_pred ---------eecccccceeEEe-c------ccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-chhh
Confidence 9999999999999 4 336777776 8999999999999999999999 899999999994 4333
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCC--------------CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTH--------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~--------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (408)
.. +..|.-+|-+++|.|.. .+++.+++.|++|++||+.++..+ .++.+|.
T Consensus 271 ~~-------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL----~tL~ghd----- 334 (406)
T KOG0295|consen 271 AE-------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL----FTLVGHD----- 334 (406)
T ss_pred hh-------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE----EEEeccc-----
Confidence 22 67899999999998731 259999999999999999999654 6777774
Q ss_pred cccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe
Q 015363 335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH 391 (408)
Q Consensus 335 ~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~ 391 (408)
.+|..++|+|.|+||+++. |+++++||+++ +++.++++.|+.....+..
T Consensus 335 -------nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 335 -------NWVRGVAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred -------ceeeeeEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCcceeEEEec
Confidence 7999999999999999985 69999999998 8999999999998888864
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=218.69 Aligned_cols=263 Identities=18% Similarity=0.296 Sum_probs=213.2
Q ss_pred CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (408)
..+.|+-...- +.....-...+|-.++|+|+|+++|+|+.|+...||++.+.... ...+.
T Consensus 78 klIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~-----------------g~~~v 137 (343)
T KOG0286|consen 78 KLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE-----------------GNVRV 137 (343)
T ss_pred eEEEEEccccc---ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc-----------------cccee
Confidence 44556655421 11122234678999999999999999999999999999865321 12234
Q ss_pred eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (408)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (408)
...+.+|+ +.+.|..|.+ ...|++++-|.+..+||+++++....+..|.. .|.
T Consensus 138 ~r~l~gHt------------gylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g--------DV~---- 190 (343)
T KOG0286|consen 138 SRELAGHT------------GYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTG--------DVM---- 190 (343)
T ss_pred eeeecCcc------------ceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcc--------cEE----
Confidence 56789999 7799999963 34899999999999999999999998888743 355
Q ss_pred CceeeEEcc-CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe
Q 015363 173 SAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (408)
Q Consensus 173 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (408)
++.++| +++.. ++|+-|+..++|| ++. ..+++.+ .+|...|++++|.|+|.-|++|
T Consensus 191 ---slsl~p~~~ntF------------vSg~cD~~aklWD-~R~------~~c~qtF-~ghesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 191 ---SLSLSPSDGNTF------------VSGGCDKSAKLWD-VRS------GQCVQTF-EGHESDINSVRFFPSGDAFATG 247 (343)
T ss_pred ---EEecCCCCCCeE------------Eecccccceeeee-ccC------cceeEee-cccccccceEEEccCCCeeeec
Confidence 678888 77776 9999999999999 433 5677777 9999999999999999999999
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (408)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (408)
+|++.++||++. .+.+.++. -.....+|++++|+..| ++|.+|..|..+.+||.-.++.+ ..+.+|+
T Consensus 248 SDD~tcRlyDlRa-D~~~a~ys-----~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~v----g~L~GHe- 315 (343)
T KOG0286|consen 248 SDDATCRLYDLRA-DQELAVYS-----HDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERV----GVLAGHE- 315 (343)
T ss_pred CCCceeEEEeecC-CcEEeeec-----cCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceE----EEeeccC-
Confidence 999999999994 45555432 23345679999999999 99999999999999999888665 6777775
Q ss_pred CCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEE
Q 015363 331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD 368 (408)
Q Consensus 331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd 368 (408)
..|.++..+|||.-|++|+ |.+++||.
T Consensus 316 -----------NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 -----------NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -----------CeeEEEEECCCCcEEEecchhHheeecC
Confidence 7899999999999999998 89999994
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.9e-33 Score=218.75 Aligned_cols=278 Identities=15% Similarity=0.208 Sum_probs=218.4
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
..+|.+.|+.+.|+|+|.+||||+.|..|.||++.+... -...+++|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs---------- 90 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS---------- 90 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc----------
Confidence 357999999999999999999999999999999765543 244677898
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
+.|..+.|.+ |++.+++++.|.+|+.||++++++...++.+..- +. .+.-..-|..+
T Consensus 91 --gAVM~l~~~~--d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~--------vN-------s~~p~rrg~~l---- 147 (338)
T KOG0265|consen 91 --GAVMELHGMR--DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF--------VN-------SLDPSRRGPQL---- 147 (338)
T ss_pred --ceeEeeeecc--CCCEEEEecCCceEEEEecccceeeehhccccce--------ee-------ecCccccCCeE----
Confidence 8899999964 5889999999999999999999988877776432 11 12212223332
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+.+++.|+++++|| ++..+. .++ ......++++.|..++..+.+| -|+.|++||++.. ....
T Consensus 148 -------v~SgsdD~t~kl~D-~R~k~~------~~t--~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~ 210 (338)
T KOG0265|consen 148 -------VCSGSDDGTLKLWD-IRKKEA------IKT--FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLY 210 (338)
T ss_pred -------EEecCCCceEEEEe-ecccch------hhc--cccceeEEEEEecccccceeeccccCceeeeccccC-cceE
Confidence 57899999999999 554322 222 2234678999999999999998 8999999999843 3443
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
+ +.+|.+.|+.+..+|+| .++.+-+.|.++++||++....-.+.++.++++... ..-....++|
T Consensus 211 ~-------lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn--------feknlL~csw 274 (338)
T KOG0265|consen 211 T-------LSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN--------FEKNLLKCSW 274 (338)
T ss_pred E-------eecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh--------hhhhcceeec
Confidence 3 78999999999999999 999999999999999999876655666777777321 0123467899
Q ss_pred ccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCee
Q 015363 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYF 397 (408)
Q Consensus 350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (408)
+|+++++.+|+ |..+++||... ...+..++||.+....+..--...+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTEPI 322 (338)
T ss_pred cCCCCccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCCcE
Confidence 99999999995 89999999987 6899999999998877764333443
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.2e-34 Score=235.14 Aligned_cols=252 Identities=15% Similarity=0.268 Sum_probs=208.1
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
..|.++|.++.|+++|.++++|+.+|.|++|+..-+. +..+++|..
T Consensus 135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------------------------Vk~~~ahh~---------- 180 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------------------------VKIIQAHHA---------- 180 (464)
T ss_pred hhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------------------------hHHhhHhhh----------
Confidence 4699999999999999999999999999999965443 345565542
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
..|++++|+|. ++.|++++.||+|+|||....+...++..+.-. +. ++.|+|....+
T Consensus 181 -eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd--------Vk-------svdWHP~kgLi----- 237 (464)
T KOG0284|consen 181 -EAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD--------VK-------SVDWHPTKGLI----- 237 (464)
T ss_pred -hhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCC--------cc-------eeccCCcccee-----
Confidence 67999999864 679999999999999999988777766665432 22 78999999988
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
++++.|..|++|| ...+.|+..+ .+|...|..+.|+|++++|+++ .|..++++|+++.+...
T Consensus 238 -------asgskDnlVKlWD-------prSg~cl~tl-h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~-- 300 (464)
T KOG0284|consen 238 -------ASGSKDNLVKLWD-------PRSGSCLATL-HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF-- 300 (464)
T ss_pred -------EEccCCceeEeec-------CCCcchhhhh-hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH--
Confidence 9999999999999 4456777775 8999999999999999999999 89999999999544443
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
.+.+|...|+++.|+|-.+.+|.+|+.||.|..|.+...+.+ ..+ -.+|...|++++|+
T Consensus 301 ------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~----~~i-----------~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 301 ------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL----GEI-----------PPAHDGEIWSLAYH 359 (464)
T ss_pred ------HhhcchhhheeeccccccccceeeccCCCceEEEeccccccc----cCC-----------Ccccccceeeeecc
Confidence 278899999999999999899999999999999998743222 221 13456899999999
Q ss_pred cCCCEEEEeC-CCeEEEEECCCCCCceee
Q 015363 351 RNGRHILSRD-YMTLKLWDINMDSGPVAT 378 (408)
Q Consensus 351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~ 378 (408)
|-|..|++|+ |.++++|.-.-++.....
T Consensus 360 PlGhil~tgsnd~t~rfw~r~rp~d~~~~ 388 (464)
T KOG0284|consen 360 PLGHILATGSNDRTVRFWTRNRPGDKNAD 388 (464)
T ss_pred ccceeEeecCCCcceeeeccCCCCCcccc
Confidence 9999999997 799999987655544433
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.1e-33 Score=246.91 Aligned_cols=205 Identities=18% Similarity=0.259 Sum_probs=181.2
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+|.++|..+.|+|+.++|++++.|++||+|.+.+..+ +..++||.
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-----------------------~V~y~GH~--------- 493 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-----------------------LVIYKGHL--------- 493 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeeccccee-----------------------EEEecCCC---------
Confidence 3578999999999999999999999999999999987763 56788999
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.+|.++.|+|. |-+||+++.|++-++|.....+..+++..+... +. ++.|+|+..++
T Consensus 494 ---~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~PlRifaghlsD--------V~-------cv~FHPNs~Y~--- 550 (707)
T KOG0263|consen 494 ---APVWDVQFAPR--GYYFATASHDQTARLWSTDHNKPLRIFAGHLSD--------VD-------CVSFHPNSNYV--- 550 (707)
T ss_pred ---cceeeEEecCC--ceEEEecCCCceeeeeecccCCchhhhcccccc--------cc-------eEEECCccccc---
Confidence 88999999866 999999999999999999998888888777543 22 68999999998
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
++|+.|.++++|| +. .+..++.+ .+|..+|.+++|+|+|++|++| .|+.|.+||+..+....
T Consensus 551 ---------aTGSsD~tVRlWD-v~------~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 551 ---------ATGSSDRTVRLWD-VS------TGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ---------ccCCCCceEEEEE-cC------CCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh
Confidence 9999999999999 43 35556776 8999999999999999999999 99999999999544433
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
.+.+|.+.|.++.|+.+| .+||+|+.|.+|++||+..-
T Consensus 614 --------~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 614 --------QLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred --------hhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhh
Confidence 268899999999999999 99999999999999998754
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=238.62 Aligned_cols=284 Identities=16% Similarity=0.274 Sum_probs=218.1
Q ss_pred ccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (408)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (408)
.++.+.|+... |.-...+.+|...|+|++++|||+++|||+.||.|+|||...+-
T Consensus 329 lgQLlVweWqs---EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---------------------- 383 (893)
T KOG0291|consen 329 LGQLLVWEWQS---ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---------------------- 383 (893)
T ss_pred cceEEEEEeec---cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce----------------------
Confidence 34566676653 22233456899999999999999999999999999999987664
Q ss_pred ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (408)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (408)
+..+|..|+ +.|+.+.|+.. |..+++++.||+|+.||+...+.-+++..+... ..
T Consensus 384 -C~vTFteHt------------s~Vt~v~f~~~--g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~---------Qf- 438 (893)
T KOG0291|consen 384 -CFVTFTEHT------------SGVTAVQFTAR--GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI---------QF- 438 (893)
T ss_pred -EEEEeccCC------------CceEEEEEEec--CCEEEEeecCCeEEeeeecccceeeeecCCCce---------ee-
Confidence 457899999 88999999755 789999999999999999998887777665432 11
Q ss_pred cCCceeeEEccCCCeeecccccccCccccCCCCCc-eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (408)
.+++..|.|..+ ++|+.|. .|.+|+ +.. ++.+.. +.+|.++|.+++|+|++..|+
T Consensus 439 ----scvavD~sGelV------------~AG~~d~F~IfvWS-~qT------GqllDi-LsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 439 ----SCVAVDPSGELV------------CAGAQDSFEIFVWS-VQT------GQLLDI-LSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred ----eEEEEcCCCCEE------------EeeccceEEEEEEE-eec------Ceeeeh-hcCCCCcceeeEEccccCeEE
Confidence 167888888876 6776664 689999 433 333333 599999999999999999999
Q ss_pred Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (408)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (408)
++ .|.+|++||+-......+.++ +...+..++|+|+| ..+|+++-||.|.+||...+... ..+.+.
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~--------i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~----~~Idgr 561 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLE--------IRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQV----GSIDGR 561 (893)
T ss_pred eccccceEEEEEeeccCceeeeEe--------eccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceee----ccccch
Confidence 99 899999999985544444432 45668999999999 99999999999999999877543 222222
Q ss_pred cCC----CCcccc----ccccceeEEEEEccCCCEEEEeCC-CeEEEEECCCCCCceeeeeec
Q 015363 329 EAP----GTRSFF----TEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 329 ~~~----~~~~~~----~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~~~ 382 (408)
... .....+ ......++.+++|+||.+|++|+. +.|++|++.+ +..++.++..
T Consensus 562 kD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~-~vllkkfqiS 623 (893)
T KOG0291|consen 562 KDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE-GVLLKKFQIS 623 (893)
T ss_pred hhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch-hheeeeEEec
Confidence 110 000011 112346899999999999999875 9999999997 6888877654
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-31 Score=222.49 Aligned_cols=307 Identities=13% Similarity=0.219 Sum_probs=215.1
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec---cCCccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYLKSL 109 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~h~~~~~~~~~~ 109 (408)
.|..-|+|+.|+|||.++|+++.||.|.|||=.+++. +..+. +|.
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~-----------------------vg~l~~~~aHk--------- 235 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK-----------------------VGELEDSDAHK--------- 235 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-----------------------EEEecCCCCcc---------
Confidence 6889999999999999999999999999999887763 34444 677
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-----ccCCCCCeEeecC-CceeeEEccCC
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-----KAAGNGPIFGSHV-SAIPKSYMANG 183 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~-~~~~~~~~~~~ 183 (408)
+.|.+++|+|+ ++.|++++.|.+++|||+.+.++.+.+....... ..-++..+...+. ..+..--..++
T Consensus 236 ---GsIfalsWsPD--s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 236 ---GSIFALSWSPD--STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ---ccEEEEEECCC--CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 77999999765 8899999999999999999988877665543310 0011111211111 11111111112
Q ss_pred Ceeecccccc----------cCccccCCCCCceeeeceeeeccccc----------------------------------
Q 015363 184 GCGERNFGCA----------SNDSSFPPGGVSSLRLPVVVTSQETN---------------------------------- 219 (408)
Q Consensus 184 ~~l~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~~---------------------------------- 219 (408)
..+..+.|+. +..++++++.||.|.-|+ .......
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~-~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD-SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe-cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 2222222222 223459999999999998 3221100
Q ss_pred --------------cccccc----------------e--eeccc--------cccceEEEEeCCCCCEEEEe-cCCeEEE
Q 015363 220 --------------LVAGCR----------------R--IYAHA--------HDYHINSISNNSDGETFISA-DDLRINL 258 (408)
Q Consensus 220 --------------~~~~~~----------------~--~~~~~--------~~~~v~~i~~~~~~~~l~~~-~d~~i~i 258 (408)
...++. . .++.. -.....+++++|++..++.| .|+.|++
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv 469 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV 469 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence 000000 0 00010 11234578999999999999 9999999
Q ss_pred EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (408)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (408)
|.+......-.. .+..|...|++++|+|++ .+||+|...+.+.+||+.+.... ... +.
T Consensus 470 ysl~g~~l~ee~------~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~---~~~------------w~ 527 (603)
T KOG0318|consen 470 YSLSGDELKEEA------KLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVK---TNR------------WA 527 (603)
T ss_pred EEecCCccccee------eeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCcee---cce------------ee
Confidence 999843322211 256799999999999999 99999999999999999887431 011 34
Q ss_pred cccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee
Q 015363 339 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG 399 (408)
Q Consensus 339 ~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (408)
-|++.|.+++|+|+.+++|+|+ |..|.+|+++.+.+.+.....|....+.+..+.++.++.
T Consensus 528 FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvS 589 (603)
T KOG0318|consen 528 FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVS 589 (603)
T ss_pred eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEe
Confidence 4678999999999999999998 899999999988888888888988888887777777664
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=222.05 Aligned_cols=248 Identities=14% Similarity=0.280 Sum_probs=205.9
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
.+|.++|.|+++.|...+|++|+.|++|+|||+.++. +..++.||.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----------------------LkltltGhi----------- 193 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----------------------LKLTLTGHI----------- 193 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----------------------EEEeecchh-----------
Confidence 4799999999999999999999999999999999886 457889998
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
..|..+++++. ..++++++.|+.|+.||++..+.++...++.. .|+ ++..+|.-..+
T Consensus 194 -~~vr~vavS~r--HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--------~V~-------~L~lhPTldvl----- 250 (460)
T KOG0285|consen 194 -ETVRGVAVSKR--HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--------GVY-------CLDLHPTLDVL----- 250 (460)
T ss_pred -heeeeeeeccc--CceEEEecCCCeeEEEechhhhhHHHhccccc--------eeE-------EEeccccceeE-----
Confidence 77999999876 44999999999999999999988776666543 355 67888888887
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
++++.|.++++|| ++.. ..+.. +.+|...|..+.+.|....+++| .|++|++||++.++....
T Consensus 251 -------~t~grDst~RvWD-iRtr------~~V~~-l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t- 314 (460)
T KOG0285|consen 251 -------VTGGRDSTIRVWD-IRTR------ASVHV-LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT- 314 (460)
T ss_pred -------EecCCcceEEEee-eccc------ceEEE-ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe-
Confidence 9999999999999 5442 22333 48999999999999999999999 899999999996555443
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
+..|...|++++.+|.. ..||+++.| .|+-|++..+..+ ..+.+| ...|+.++..
T Consensus 315 -------lt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~----~nlsgh------------~~iintl~~n 369 (460)
T KOG0285|consen 315 -------LTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFL----QNLSGH------------NAIINTLSVN 369 (460)
T ss_pred -------eecccceeeEEecCCch-hhhhccCCc-cceeccCCccchh----hccccc------------cceeeeeeec
Confidence 57799999999999999 889998876 5999999988665 445555 5789999998
Q ss_pred cCCCEEEEeCC-CeEEEEECCCCCCceeee
Q 015363 351 RNGRHILSRDY-MTLKLWDINMDSGPVATF 379 (408)
Q Consensus 351 pdg~~l~s~~d-~~v~~wd~~~~~~~~~~~ 379 (408)
.|| ++++|+| |.+.+||.++ +...+..
T Consensus 370 sD~-v~~~G~dng~~~fwdwks-g~nyQ~~ 397 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKS-GHNYQRG 397 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCc-Ccccccc
Confidence 876 5566655 9999999997 5555444
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.4e-33 Score=233.26 Aligned_cols=278 Identities=20% Similarity=0.282 Sum_probs=221.2
Q ss_pred ccceeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363 29 GEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (408)
Q Consensus 29 ~~~~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (408)
....+|+..|+++.|.| .+.+|++|+.|+.|+||++-.. .+++++|.+|.
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----------------------~~~lrtf~gH~------- 258 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----------------------RRCLRTFKGHR------- 258 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC----------------------cceehhhhcch-------
Confidence 34568999999999999 7999999999999999998753 23678999999
Q ss_pred ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
.+|.+++|+ .+|..|++++.|+.|++||+++|++...+.....+ .++.+.|++..+
T Consensus 259 -----k~Vrd~~~s--~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~----------------~cvkf~pd~~n~- 314 (503)
T KOG0282|consen 259 -----KPVRDASFN--NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP----------------TCVKFHPDNQNI- 314 (503)
T ss_pred -----hhhhhhhcc--ccCCeeeeeecceeeeeeccccceEEEEEecCCCc----------------eeeecCCCCCcE-
Confidence 889999996 45899999999999999999999998877664332 278999998444
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
+++|+.|+.|+.|| ++..+ .++.+ ..|-+.|..+.|-++++.++++ +|+.++||+.+.+-.
T Consensus 315 ----------fl~G~sd~ki~~wD-iRs~k------vvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 315 ----------FLVGGSDKKIRQWD-IRSGK------VVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP 376 (503)
T ss_pred ----------EEEecCCCcEEEEe-ccchH------HHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence 58999999999999 65533 33343 7788999999999999999999 999999999985443
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
...+ ...+.-.+.++..+|++ .++++-+.|..|.++.+...-.. ..-+.+++|... +.-..
T Consensus 377 ik~i-------~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~va----------Gys~~ 437 (503)
T KOG0282|consen 377 IKNI-------ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHSVA----------GYSCQ 437 (503)
T ss_pred chhh-------cchhhccCcceecCCCC-CeehhhccCceEEEEeccccccc-CHhhhhcceecc----------Cceee
Confidence 3322 12223345689999999 99999999999999987654222 222567777432 45567
Q ss_pred EEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc-cceEEecCCCee
Q 015363 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL-RPKVMHSSKNYF 397 (408)
Q Consensus 347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 397 (408)
+.|||||.+|++|+ ||.+.+||.++ -+++..++.|.+. ....+.+.....
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSK 489 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcce
Confidence 89999999999995 79999999998 6999999999665 555555555443
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=207.23 Aligned_cols=247 Identities=15% Similarity=0.275 Sum_probs=194.9
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
.|+..|.+++|+|.|++||+||.|.++.||.-..+ +++.+..+.||+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~---------------------efecv~~lEGHE------------ 105 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG---------------------EFECVATLEGHE------------ 105 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCC---------------------ceeEEeeeeccc------------
Confidence 79999999999999999999999999999986544 566888999999
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|.+++|+++ |.+||++++|+.|-||.+..+ ++..+++.|... |. .+.|+|....|
T Consensus 106 nEVK~Vaws~s--G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--------VK-------~V~WHPt~dlL--- 165 (312)
T KOG0645|consen 106 NEVKCVAWSAS--GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--------VK-------HVIWHPTEDLL--- 165 (312)
T ss_pred cceeEEEEcCC--CCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--------cc-------EEEEcCCccee---
Confidence 55999999755 889999999999999999854 455555555443 22 58999999887
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
++++.|++|++|+ -.. .....|.+.+ .+|...|.+++|+|.|..|+++ +|++++||...+.-
T Consensus 166 ---------~S~SYDnTIk~~~-~~~---dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--- 228 (312)
T KOG0645|consen 166 ---------FSCSYDNTIKVYR-DED---DDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--- 228 (312)
T ss_pred ---------EEeccCCeEEEEe-ecC---CCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---
Confidence 9999999999998 221 3345666775 8999999999999999999999 99999999976221
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
-..|...++.+.|. ++ .||+++.|+.|++|.-... . +.|...+..+ .-..|...|++++
T Consensus 229 ---------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~-~-d~p~~~l~~~-------~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 229 ---------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDS-P-DEPSWNLLAK-------KEGAHEVDVNSVQ 287 (312)
T ss_pred ---------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCC-C-CCchHHHHHh-------hhcccccccceEE
Confidence 13367889999998 54 8999999999999976632 1 1111111111 1244667899999
Q ss_pred EccC-CCEEEEeC-CCeEEEEECC
Q 015363 349 FARN-GRHILSRD-YMTLKLWDIN 370 (408)
Q Consensus 349 ~spd-g~~l~s~~-d~~v~~wd~~ 370 (408)
|.|. ...|++|+ ||.|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 9994 56788875 5999999874
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-31 Score=240.16 Aligned_cols=264 Identities=18% Similarity=0.367 Sum_probs=213.6
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
|...|.|+.|+++|++|++++.++.+++|+..+... .....+.+|. .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------~ 204 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------R 204 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------c
Confidence 478899999999999999999999999999855431 1234557787 7
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEc-CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
.|++++|+|+ ++++++++.|++|++||+ ..+...+++..|... +. +++|+|+|+.+
T Consensus 205 ~v~~~~fs~d--~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~--------v~-------~~~f~p~g~~i------ 261 (456)
T KOG0266|consen 205 GVSDVAFSPD--GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY--------VT-------SVAFSPDGNLL------ 261 (456)
T ss_pred ceeeeEECCC--CcEEEEecCCceEEEeeccCCCeEEEEecCCCCc--------eE-------EEEecCCCCEE------
Confidence 7999999766 889999999999999999 555778888776543 44 79999999877
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc-eeeE
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFNI 270 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~ 270 (408)
++|+.|++|++|| +.. +++.+.+ .+|...|++++|++++++|+++ .|+.|++||+.+... +...
T Consensus 262 ------~Sgs~D~tvriWd-~~~------~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 262 ------VSGSDDGTVRIWD-VRT------GECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL 327 (456)
T ss_pred ------EEecCCCcEEEEe-ccC------CeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence 9999999999999 543 5566665 9999999999999999999999 899999999995442 2222
Q ss_pred eecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 271 VDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 271 ~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
+..+.. .+++++|+|++ .+++++..|+.+++||++.+... ..+.+|... ...+.+..
T Consensus 328 -------~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~---------~~~~~~~~ 386 (456)
T KOG0266|consen 328 -------LSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSV----GTYTGHSNL---------VRCIFSPT 386 (456)
T ss_pred -------ccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcce----eeecccCCc---------ceeEeccc
Confidence 333333 59999999999 99999999999999999988654 666666421 02455566
Q ss_pred EccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec-ccccceE
Q 015363 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKV 389 (408)
Q Consensus 349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~-~~~~~~~ 389 (408)
.++.++++++|+ |+.|++||+.+ +..++.+.+| ......+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSS-GGILQRLEGHSKAAVSDL 428 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCc-cchhhhhcCCCCCceecc
Confidence 688999999996 79999999998 7999999999 4443333
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.2e-33 Score=226.61 Aligned_cols=253 Identities=15% Similarity=0.303 Sum_probs=198.7
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-+.+|..|.|.|+|+.|++|+..|.+.||+.... .+...+++|. +
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------------nFEtilQaHD------------s 139 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------------NFETILQAHD------------S 139 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee-----------------------eHHHHhhhhc------------c
Confidence 3458999999999999999999999999996432 2345678898 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
+|+++.|+++ |.++++|..+|.|++|+..-...+.....+. ..|. .++|+|+...+
T Consensus 140 ~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~--------eaIR-------dlafSpnDskF------- 195 (464)
T KOG0284|consen 140 PVRTMKWSHN--GTWMISGDKGGMIKYWQPNMNNVKIIQAHHA--------EAIR-------DLAFSPNDSKF------- 195 (464)
T ss_pred cceeEEEccC--CCEEEEcCCCceEEecccchhhhHHhhHhhh--------hhhh-------eeccCCCCcee-------
Confidence 8999999754 8899999999999999987554333222221 1233 68888877665
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
++++.|+.|++|| ... .+..+. +.+|.-.|.+++|+|...++|++ .|..|++||.+ .+.++.
T Consensus 196 -----~t~SdDg~ikiWd-f~~------~kee~v-L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~--- 258 (464)
T KOG0284|consen 196 -----LTCSDDGTIKIWD-FRM------PKEERV-LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLA--- 258 (464)
T ss_pred -----EEecCCCeEEEEe-ccC------Cchhhe-eccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhh---
Confidence 9999999999999 332 222233 38999999999999999999999 89999999999 455553
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
++..|+..|..+.|+|++ ++|++++.|..++++|+++.+.+ ..+++| ...|+++.|+|-
T Consensus 259 ----tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl----~~~r~H------------kkdv~~~~WhP~ 317 (464)
T KOG0284|consen 259 ----TLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKEL----FTYRGH------------KKDVTSLTWHPL 317 (464)
T ss_pred ----hhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHH----HHhhcc------------hhhheeeccccc
Confidence 378899999999999999 99999999999999999977554 666666 478999999995
Q ss_pred CC-EEEEe-CCCeEEEEECCCCCCceee-eeeccc
Q 015363 353 GR-HILSR-DYMTLKLWDINMDSGPVAT-FQVHEH 384 (408)
Q Consensus 353 g~-~l~s~-~d~~v~~wd~~~~~~~~~~-~~~~~~ 384 (408)
.. +|.+| .||.|..|.+... +++-. -.+|..
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHDG 351 (464)
T ss_pred cccceeeccCCCceEEEecccc-ccccCCCccccc
Confidence 44 55555 5899999999853 33333 334444
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.7e-31 Score=201.38 Aligned_cols=261 Identities=13% Similarity=0.201 Sum_probs=196.4
Q ss_pred CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (408)
Q Consensus 48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 127 (408)
-+||++++|-+||+|...++.+ ..+++... +.|+.+...|+ +.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C-----------------------~rTiqh~d------------sqVNrLeiTpd--k~ 53 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC-----------------------SRTIQHPD------------SQVNRLEITPD--KK 53 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE-----------------------EEEEecCc------------cceeeEEEcCC--cc
Confidence 4899999999999999998864 34455444 67999999654 76
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (408)
Q Consensus 128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (408)
.||+++ ...||+||++++....+..+..+ ...|. .+.|..+|+.+ ++|++||++
T Consensus 54 ~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h------~kNVt-------aVgF~~dgrWM------------yTgseDgt~ 107 (311)
T KOG0315|consen 54 DLAAAG-NQHVRLYDLNSNNPNPVATFEGH------TKNVT-------AVGFQCDGRWM------------YTGSEDGTV 107 (311)
T ss_pred hhhhcc-CCeeEEEEccCCCCCceeEEecc------CCceE-------EEEEeecCeEE------------EecCCCceE
Confidence 776665 45899999998765444333322 12344 68999999998 999999999
Q ss_pred eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (408)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (408)
++|| ++. ..+.+. ..|..+|+++..+|+..-|++| .+|.|++||+.......++ ++.....|.
T Consensus 108 kIWd-lR~------~~~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-------iPe~~~~i~ 171 (311)
T KOG0315|consen 108 KIWD-LRS------LSCQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-------IPEDDTSIQ 171 (311)
T ss_pred EEEe-ccC------cccchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-------CCCCCccee
Confidence 9999 544 233343 3566899999999999999999 8999999999843222222 455568899
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEE
Q 015363 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK 365 (408)
Q Consensus 287 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~ 365 (408)
++...|+| .+++++...|..++|++-..... ..+. +...++.|.+-|..+.+|||+++||+++ |.+++
T Consensus 172 sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s~l~------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 172 SLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----SELE------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred eEEEcCCC-cEEEEecCCccEEEEEccCCCcc----ccce------EhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence 99999999 99999999999999999764321 1111 1222566678999999999999999985 89999
Q ss_pred EEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363 366 LWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM 398 (408)
Q Consensus 366 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (408)
||+.+..-+.-..+++|+...-...+..++..+
T Consensus 241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred EEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 999987446777888888765555444555543
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=216.70 Aligned_cols=244 Identities=19% Similarity=0.302 Sum_probs=205.3
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+|.+.|..|+|+..|++||+++.|=.+++||.++. +++...+.+|+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~----------------------~~c~ks~~gh~--------- 193 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF----------------------FRCIKSLIGHE--------- 193 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHH----------------------HHHHHHhcCcc---------
Confidence 34589999999999999999999999988999998753 23456677777
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|.++.|.|. |.+++++++|.+|+.|++.++.++.++..+.. .+. .+..+.||..+
T Consensus 194 ---h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--------wvr-------~v~v~~DGti~--- 250 (406)
T KOG0295|consen 194 ---HGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--------WVR-------MVRVNQDGTII--- 250 (406)
T ss_pred ---cceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchH--------hEE-------EEEecCCeeEE---
Confidence 77999999987 67999999999999999999999998887643 344 57788888887
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC---------------CCEEEEe-cC
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---------------GETFISA-DD 253 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---------------~~~l~~~-~d 253 (408)
++++.|..+++|- +.. ..|... +..|..+|.+++|.|. +.+++++ .|
T Consensus 251 ---------As~s~dqtl~vW~-~~t------~~~k~~-lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 251 ---------ASCSNDQTLRVWV-VAT------KQCKAE-LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred ---------EecCCCceEEEEE-ecc------chhhhh-hhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 9999999999998 433 334444 3788889999999774 2578888 89
Q ss_pred CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCC
Q 015363 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (408)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (408)
++|++||+.++...+. +.+|..+|+.++|+|-| ++|+++..|+++++||+++++.. +.++.|+
T Consensus 314 ktIk~wdv~tg~cL~t--------L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cm----k~~~ah~---- 376 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFT--------LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCM----KTLEAHE---- 376 (406)
T ss_pred ceEEEEeccCCeEEEE--------EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceee----eccCCCc----
Confidence 9999999996654443 68999999999999999 99999999999999999998544 6776664
Q ss_pred ccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363 334 RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI 369 (408)
Q Consensus 334 ~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~ 369 (408)
.-+++++|+.+..++++|+ |.++++|.-
T Consensus 377 --------hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 --------HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --------ceeEEEecCCCCceEEeccccceeeeeec
Confidence 6799999999999999998 799999964
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-31 Score=219.89 Aligned_cols=241 Identities=19% Similarity=0.277 Sum_probs=202.4
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
.-.|+++|.++.|+.+|.||++++.|+++.|||..++.. .+.|.-|.
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-----------------------~q~f~~~s---------- 318 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-----------------------KQQFEFHS---------- 318 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-----------------------EEeeeecc----------
Confidence 347999999999999999999999999999999877753 45566666
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
.+-.+|.|- +...|++++.|+.|+|+.+........+..|.. .|. ++.|.|.|..|
T Consensus 319 --~~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--------~V~-------alk~n~tg~LL---- 374 (524)
T KOG0273|consen 319 --APALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--------EVN-------ALKWNPTGSLL---- 374 (524)
T ss_pred --CCccceEEe---cCceEeecCCCceEEEEEecCCCcceeeecccC--------ceE-------EEEECCCCceE----
Confidence 556789993 345899999999999999999888888887643 455 78999999998
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC---------CEEEEe-cCCeEEEEe
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG---------ETFISA-DDLRINLWN 260 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~l~~~-~d~~i~iwd 260 (408)
++++.|+++++|. ..+ ..+... +.+|...|..+.|+|+| ..++++ .|++|++||
T Consensus 375 --------aS~SdD~TlkiWs-~~~------~~~~~~-l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 375 --------ASCSDDGTLKIWS-MGQ------SNSVHD-LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred --------EEecCCCeeEeee-cCC------Ccchhh-hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 9999999999999 322 333334 48999999999999975 457777 999999999
Q ss_pred CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
+. ...++.. +..|..+|++++|+|+| +++|+|+.||.|.+|++++++.. +.+.+.
T Consensus 439 v~-~gv~i~~-------f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l~----~s~~~~------------ 493 (524)
T KOG0273|consen 439 VE-SGVPIHT-------LMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKLV----KSYQGT------------ 493 (524)
T ss_pred cc-CCceeEe-------eccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchhee----EeecCC------------
Confidence 99 4445443 67899999999999999 99999999999999999999765 666665
Q ss_pred cceeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363 341 IASISDIKFARNGRHILSR-DYMTLKLWDIN 370 (408)
Q Consensus 341 ~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~ 370 (408)
+.|..++|+.+|..|.++ +|+.+++-|++
T Consensus 494 -~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 494 -GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 679999999999988877 79999999885
No 28
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-30 Score=231.93 Aligned_cols=272 Identities=19% Similarity=0.247 Sum_probs=197.0
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCC----------------------------CCcccccccccc--
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDN----------------------------GGQRRDLEMMDY-- 82 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~----------------------------~~~~~~~~~~~~-- 82 (408)
+|.+.|+++.||+||+|||+|+.||.|+||.+...+.. ....+.......
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999999999999999999999999998761100 000000000000
Q ss_pred -cccCCC------ccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccC
Q 015363 83 -SMSRHP------EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (408)
Q Consensus 83 -~~~~~p------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 155 (408)
....-| .-+.+..|.||. +.|.++.|+. + .+|++++.|++||+|++...+++.++...
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLKVFSHN 409 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccccc--C-CeeEeccccccEEeecCCCcceeeEEecC
Confidence 000111 224556788888 6699999963 3 49999999999999999999999988774
Q ss_pred CCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccc
Q 015363 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH 235 (408)
Q Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (408)
. -|. +++|+|.... ++++|+-|+.+++|. +...+... ...-..-
T Consensus 410 d---------fVT-------cVaFnPvDDr-----------yFiSGSLD~KvRiWs-I~d~~Vv~--------W~Dl~~l 453 (712)
T KOG0283|consen 410 D---------FVT-------CVAFNPVDDR-----------YFISGSLDGKVRLWS-ISDKKVVD--------WNDLRDL 453 (712)
T ss_pred C---------eeE-------EEEecccCCC-----------cEeecccccceEEee-cCcCeeEe--------ehhhhhh
Confidence 3 233 8999996543 249999999999999 54322211 1222266
Q ss_pred eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC--CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
|+++++.|+|+..+.| -+|.+++|++. +.+......+.. ..-..|. .|+.+.|.|..+..+++.+.|.+|+|||.
T Consensus 454 ITAvcy~PdGk~avIGt~~G~C~fY~t~-~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 454 ITAVCYSPDGKGAVIGTFNGYCRFYDTE-GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred heeEEeccCCceEEEEEeccEEEEEEcc-CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 9999999999999999 89999999998 444433333221 1112233 79999999988666777789999999999
Q ss_pred CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
+...++ ..|++.... ..-....|+.||++|++++ |..|++|+...
T Consensus 532 ~~~~lv----~KfKG~~n~----------~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 532 RDKDLV----HKFKGFRNT----------SSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cchhhh----hhhcccccC----------CcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 877655 666666431 3345678999999999996 59999999854
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.8e-30 Score=208.52 Aligned_cols=277 Identities=16% Similarity=0.212 Sum_probs=210.9
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.+..|++.|.+++.+|+.+++|||+.|..-.||++.++. ....+.+|+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------------------~~~eltgHK--------- 106 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------------------FAGELTGHK--------- 106 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------------------ceeEecCCC---------
Confidence 345799999999999999999999999999999998886 356788998
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|+++.|+ .+|.+||+|..+|.|+||+..++.....+..... .-.+ +.|+|.+..+
T Consensus 107 ---DSVt~~~Fs--hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-------dieW--------l~WHp~a~il--- 163 (399)
T KOG0296|consen 107 ---DSVTCCSFS--HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-------DIEW--------LKWHPRAHIL--- 163 (399)
T ss_pred ---CceEEEEEc--cCceEEEecCCCccEEEEEcccCceEEEeecccC-------ceEE--------EEecccccEE---
Confidence 889999996 5699999999999999999999987776653222 2233 7899988887
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
+.|+.||.+.+|. +... ...+. +.+|..++++=.|.|+|+.++++ .||+|++|+..+..+..
T Consensus 164 ---------lAG~~DGsvWmw~-ip~~------~~~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 164 ---------LAGSTDGSVWMWQ-IPSQ------ALCKV-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred ---------EeecCCCcEEEEE-CCCc------ceeeE-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 9999999999999 4321 22333 48999999999999999999999 99999999999654443
Q ss_pred eEee-----cCCCcc--------------------------------------cCCcCCeEEEE---EcCCCCceEEEEe
Q 015363 269 NIVD-----VKPANM--------------------------------------EDLTEVITSAE---FHPTHCNMLAYSS 302 (408)
Q Consensus 269 ~~~~-----~~~~~~--------------------------------------~~~~~~v~~~~---~~p~~~~~l~s~~ 302 (408)
.+-. ..+..+ ..+...+.++. ++..- .++|+|+
T Consensus 227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~ 305 (399)
T KOG0296|consen 227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGS 305 (399)
T ss_pred EecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhccc
Confidence 3310 000000 01111122222 22233 4788999
Q ss_pred CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeee
Q 015363 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 303 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
-||+|.|||+...+. +..-.| ..+|..+.|-+ ..+|+++ .+|.|+.||.++ |+++.++.|
T Consensus 306 vdG~i~iyD~a~~~~-----R~~c~h------------e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~G 366 (399)
T KOG0296|consen 306 VDGTIAIYDLAASTL-----RHICEH------------EDGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTG 366 (399)
T ss_pred ccceEEEEecccchh-----heeccC------------CCceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEec
Confidence 999999999987643 222233 46799999998 5667666 689999999999 899999999
Q ss_pred cccccceEEecCCCeee
Q 015363 382 HEHLRPKVMHSSKNYFM 398 (408)
Q Consensus 382 ~~~~~~~~~~~~~~~~~ 398 (408)
|........-..+.+++
T Consensus 367 H~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLV 383 (399)
T ss_pred CchheeEEEEcCCCcEE
Confidence 99987777655555543
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=8.1e-32 Score=216.99 Aligned_cols=234 Identities=16% Similarity=0.318 Sum_probs=187.1
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
...+.|.|+++. ...+++|..|++|+|||..+.. ++..+.||+
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------ 237 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------ 237 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------
Confidence 356789999984 5569999999999999987554 456789999
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
+.|.|+.|. ...+++|+.|.+|++||+++++++.++-.+... |. .+.|+ ..++
T Consensus 238 GSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHcea--------VL-------hlrf~--ng~m------ 290 (499)
T KOG0281|consen 238 GSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--------VL-------HLRFS--NGYM------ 290 (499)
T ss_pred CcEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhcce--------eE-------EEEEe--CCEE------
Confidence 779999993 358999999999999999999988877665432 21 12222 2333
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (408)
++++.|.++.+|| +.. .....+.+. +.+|...|+.+.|+ .++++++ .|.+|++|++. ....+.+
T Consensus 291 ------vtcSkDrsiaVWd-m~s---ps~it~rrV-LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s-t~efvRt- 355 (499)
T KOG0281|consen 291 ------VTCSKDRSIAVWD-MAS---PTDITLRRV-LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS-TCEFVRT- 355 (499)
T ss_pred ------EEecCCceeEEEe-ccC---chHHHHHHH-Hhhhhhheeeeccc--cceEEEecCCceEEEEecc-ceeeehh-
Confidence 8999999999999 322 222334444 48999999999885 4599998 99999999999 4455543
Q ss_pred ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
+.+|...|-|+.+. + +++++|+.|.+|++||+..|..+ +.++||+ .-|.++.|.
T Consensus 356 ------l~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cL----RvLeGHE------------eLvRciRFd- 409 (499)
T KOG0281|consen 356 ------LNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACL----RVLEGHE------------ELVRCIRFD- 409 (499)
T ss_pred ------hhcccccceehhcc--C-eEEEecCCCceEEEEeccccHHH----HHHhchH------------Hhhhheeec-
Confidence 78999999999884 6 89999999999999999999665 8888885 679999994
Q ss_pred CCCEEEEeC-CCeEEEEECCCC
Q 015363 352 NGRHILSRD-YMTLKLWDINMD 372 (408)
Q Consensus 352 dg~~l~s~~-d~~v~~wd~~~~ 372 (408)
.+.|++|. ||+|++||+.+.
T Consensus 410 -~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -CceeeeccccceEEEEecccc
Confidence 68899996 799999999874
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=3.1e-29 Score=216.65 Aligned_cols=278 Identities=18% Similarity=0.315 Sum_probs=214.3
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
..|.++|++++|+|++++|++++.+|.|++|++.++.. ...+..|.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~----------- 51 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT----------- 51 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC-----------
Confidence 46899999999999999999999999999999886642 34566676
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
..+..+.|+|+ ++++++++.|+.|++|++.+++....+..+. ..+. .+.|.+++..+
T Consensus 52 -~~i~~~~~~~~--~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--------~~i~-------~~~~~~~~~~~----- 108 (289)
T cd00200 52 -GPVRDVAASAD--GTYLASGSSDKTIRLWDLETGECVRTLTGHT--------SYVS-------SVAFSPDGRIL----- 108 (289)
T ss_pred -cceeEEEECCC--CCEEEEEcCCCeEEEEEcCcccceEEEeccC--------CcEE-------EEEEcCCCCEE-----
Confidence 66889999765 6799999999999999999875555444332 1233 68888887776
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
++++.++.+.+|+ +.. ......+ ..|...+.+++|+|++.+++++ .++.|++||++.. +....
T Consensus 109 -------~~~~~~~~i~~~~-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~ 172 (289)
T cd00200 109 -------SSSSRDKTIKVWD-VET------GKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVAT 172 (289)
T ss_pred -------EEecCCCeEEEEE-CCC------cEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-cccee
Confidence 7777799999999 432 2223333 5677889999999999999988 6999999999843 33332
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
+..|...+.++.|+|++ ..+++++.|+.|++||++.++.. ..+..+ ...|.+++|+
T Consensus 173 -------~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~~~~------------~~~i~~~~~~ 228 (289)
T cd00200 173 -------LTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCL----GTLRGH------------ENGVNSVAFS 228 (289)
T ss_pred -------EecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCcee----cchhhc------------CCceEEEEEc
Confidence 45677789999999999 88888888999999999987543 444444 3689999999
Q ss_pred cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCee-ee--eeceeeec
Q 015363 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYF-MG--LDNIHTLY 407 (408)
Q Consensus 351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~d~~~~~~ 407 (408)
|++.++++++ ++.|++||+.+ ++++..+..|......+....++.. +. .|....+|
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRT-GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCC-ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 9999999997 79999999997 6888888888776555554333333 32 24444554
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3e-30 Score=227.37 Aligned_cols=247 Identities=17% Similarity=0.332 Sum_probs=202.8
Q ss_pred cceEEEEECCCCCeEEEeecC-CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 36 DIISAIEFDKSGDHLATGDRG-GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
.+|..++|+..|.+||.|+.. |.+-||++.... ++...++|. ..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----------------------YVlKQQgH~------------~~ 352 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----------------------YVLKQQGHS------------DR 352 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----------------------eeeeccccc------------cc
Confidence 578899999999999998865 899999998765 456678898 77
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
+++++++|+ |+++|+|+.||.|+|||..++-|..++..|... +. .+.|+..|+.+
T Consensus 353 i~~l~YSpD--gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~--------Vt-------~v~f~~~g~~l-------- 407 (893)
T KOG0291|consen 353 ITSLAYSPD--GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG--------VT-------AVQFTARGNVL-------- 407 (893)
T ss_pred eeeEEECCC--CcEEEeccCCCcEEEEeccCceEEEEeccCCCc--------eE-------EEEEEecCCEE--------
Confidence 999999755 999999999999999999999999888876432 33 68999999988
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEee
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~ 272 (408)
++.+-||+|+.|| +.+ ..+.+++.....-...|++..|.|.++.+| +.-.|.+|+++ .++.+.+
T Consensus 408 ----lssSLDGtVRAwD-lkR------YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TGqllDi-- 473 (893)
T KOG0291|consen 408 ----LSSSLDGTVRAWD-LKR------YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TGQLLDI-- 473 (893)
T ss_pred ----EEeecCCeEEeee-ecc------cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cCeeeeh--
Confidence 9999999999999 654 445555544445568899999999999888 56789999999 5666655
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
+.+|.++|.+++|+|.+ ..||+++.|.+|++||+-..... +.+++.. ..+..++|+||
T Consensus 474 -----LsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---vEtl~i~-------------sdvl~vsfrPd 531 (893)
T KOG0291|consen 474 -----LSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---VETLEIR-------------SDVLAVSFRPD 531 (893)
T ss_pred -----hcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCce---eeeEeec-------------cceeEEEEcCC
Confidence 79999999999999999 99999999999999999765321 1333332 57999999999
Q ss_pred CCEEEEeC-CCeEEEEECCCCCCceeee
Q 015363 353 GRHILSRD-YMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 353 g~~l~s~~-d~~v~~wd~~~~~~~~~~~ 379 (408)
|+-|+++. ||.|.+||... +..+-++
T Consensus 532 G~elaVaTldgqItf~d~~~-~~q~~~I 558 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKE-AVQVGSI 558 (893)
T ss_pred CCeEEEEEecceEEEEEhhh-ceeeccc
Confidence 99999985 89999999986 3444333
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2e-30 Score=227.99 Aligned_cols=276 Identities=20% Similarity=0.275 Sum_probs=213.8
Q ss_pred ceeeccceEEEEEC-CCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 31 EVQEVDIISAIEFD-KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 31 ~~~h~~~V~~~~~s-~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.++..+.|..++|- |+.++||.+++.+.+|+|+..+..+ ..+.||+
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c------------------------~ii~GH~--------- 365 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC------------------------QIIPGHT--------- 365 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce------------------------EEEeCch---------
Confidence 45678889999875 5788999999999999998877754 2688999
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE--eccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV--FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
+.|.++... ..|.+|++|+.|.++++|.++++..... .....+ .+.+. +++.+..+.
T Consensus 366 ---e~vlSL~~~--~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH------~~svg-------ava~~~~~a--- 424 (775)
T KOG0319|consen 366 ---EAVLSLDVW--SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH------TNSVG-------AVAGSKLGA--- 424 (775)
T ss_pred ---hheeeeeec--ccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc------ccccc-------eeeecccCc---
Confidence 779999832 3367999999999999999955433221 111111 11222 455544443
Q ss_pred cccccccCccccCCCCCceeeeceeeec-ccccc--ccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTS-QETNL--VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (408)
.++++++.|.++++|+ +.. .+... ...+... ...|+..|++++++|+..++|+| .|.+.+||+++
T Consensus 425 --------sffvsvS~D~tlK~W~-l~~s~~~~~~~~~~~~~t-~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le- 493 (775)
T KOG0319|consen 425 --------SFFVSVSQDCTLKLWD-LPKSKETAFPIVLTCRYT-ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE- 493 (775)
T ss_pred --------cEEEEecCCceEEEec-CCCcccccccceehhhHH-HHhhcccccceEecCCCceEEecccccceeeeccc-
Confidence 3468999999999999 544 11111 1111122 36899999999999999999999 99999999999
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
.....- .+.+|...|.++.|+|.. +++|++|.|++|+||.+.+.... ++|+|| .+.
T Consensus 494 ~~~l~~-------vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSCl----kT~eGH------------~~a 549 (775)
T KOG0319|consen 494 QLRLLG-------VLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCL----KTFEGH------------TSA 549 (775)
T ss_pred CceEEE-------EeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceee----eeecCc------------cce
Confidence 333433 389999999999999999 99999999999999999998655 888888 588
Q ss_pred eEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCe
Q 015363 344 ISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY 396 (408)
Q Consensus 344 i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (408)
|..+.|-.+|+.|+++ +||-+++|++++ +.+++++.+|+...-.+......+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt-~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKT-NECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccc-hhhhhhhhhccceeEEEeecCccc
Confidence 9999999999999998 689999999998 799999999988766665544444
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.5e-30 Score=194.40 Aligned_cols=256 Identities=16% Similarity=0.204 Sum_probs=206.7
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
..|.++|.++.|+-||+|.++++.|.+|++|+...+. ++.++.+|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG----------- 59 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG----------- 59 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC-----------
Confidence 4688999999999999999999999999999977664 467888888
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
..|.+++.+ .|+..|++|+.|+.+.+||+.+++..+.+..|.. .+. .+.|+.+...+
T Consensus 60 -~EVlD~~~s--~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a--------qVN-------tV~fNeesSVv----- 116 (307)
T KOG0316|consen 60 -HEVLDAALS--SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA--------QVN-------TVRFNEESSVV----- 116 (307)
T ss_pred -ceeeecccc--ccccccccCCCCceEEEEEcccCeeeeecccccc--------eee-------EEEecCcceEE-----
Confidence 449999985 4577999999999999999999999988888754 344 67888888877
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
++|+.|..+++|| .+... .++++.+ ......|.+|.++ +..+++| .||+++.||++.+. ..
T Consensus 117 -------~SgsfD~s~r~wD-CRS~s----~ePiQil-dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~-l~-- 178 (307)
T KOG0316|consen 117 -------ASGSFDSSVRLWD-CRSRS----FEPIQIL-DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT-LS-- 178 (307)
T ss_pred -------EeccccceeEEEE-cccCC----CCccchh-hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce-ee--
Confidence 9999999999999 55432 3344443 4555778888775 4567777 89999999999443 32
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
......+|++++|++++ +..++++-|+++++.|-.+|+++ +.+++|.+. ..=.+.+++
T Consensus 179 -------sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL----~sYkGhkn~----------eykldc~l~ 236 (307)
T KOG0316|consen 179 -------SDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLL----KSYKGHKNM----------EYKLDCCLN 236 (307)
T ss_pred -------hhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhHHH----HHhcccccc----------eeeeeeeec
Confidence 12345779999999999 88888999999999999999876 888888642 334567788
Q ss_pred cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc
Q 015363 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (408)
Q Consensus 351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~ 385 (408)
.....+++|+ ||.|++||+.. ...+..++.+...
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd-~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVD-ETQISKLSVVSTV 271 (307)
T ss_pred ccceeEEeccCCceEEEEEecc-ceeeeeeccCCce
Confidence 8888999997 69999999997 6777777777665
No 35
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-29 Score=197.54 Aligned_cols=264 Identities=15% Similarity=0.188 Sum_probs=207.7
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+|..+++.|.++.+|.+|.+++.|.++.||-..+++ .+-++.||.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------rlGty~GHt--------- 52 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------RLGTYDGHT--------- 52 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------eeeeecCCC---------
Confidence 345799999999999999999999999999999876554 356899999
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|.|+.. +.+.+.+++|+.|.++++||+++|+.+...+... .+. .+.|+++|.++
T Consensus 53 ---GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~---------~Vk-------~~~F~~~gn~~--- 108 (327)
T KOG0643|consen 53 ---GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTNS---------PVK-------RVDFSFGGNLI--- 108 (327)
T ss_pred ---ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecCC---------eeE-------EEeeccCCcEE---
Confidence 77999998 4557799999999999999999999888777643 344 67888888876
Q ss_pred cccccCccccC----CCCCceeeeceeeeccc-cccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363 190 FGCASNDSSFP----PGGVSSLRLPVVVTSQE-TNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (408)
Q Consensus 190 ~~~~~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (408)
+++ -+..+.|.++| +.... ......|...+ ..+...++.+-|.|-++++++| +||.|..||+++
T Consensus 109 --------l~~tD~~mg~~~~v~~fd-i~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 109 --------LASTDKQMGYTCFVSVFD-IRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------EEEehhhcCcceEEEEEE-ccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 222 24457788888 55433 23334445554 6677889999999999999999 999999999997
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC-----------
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG----------- 332 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----------- 332 (408)
+.+.... ...|...|+.|+++|+. .++++++.|.+-++||+++...+ +++....+-+
T Consensus 179 g~~~v~s-------~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 179 GKELVDS-------DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTTERPVNTAAISPLLDHV 246 (327)
T ss_pred Cceeeec-------hhhhccccccccccCCc-ceEEecccCccceeeeccceeeE----EEeeecccccceecccccceE
Confidence 6666553 56788899999999999 99999999999999999876543 2221111000
Q ss_pred ----------------------Cc----------cccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 333 ----------------------TR----------SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 333 ----------------------~~----------~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
.+ --.++|-++|++++|+|+|+..++|+ ||.|++..++.
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 00 01378999999999999999999986 79999987764
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-30 Score=230.33 Aligned_cols=254 Identities=13% Similarity=0.220 Sum_probs=211.5
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.+..|.++|..++|+|++.++++|+.|-.|++|+.++.++ +-++.||-
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-----------------------lftL~GHl--------- 93 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-----------------------LFTLLGHL--------- 93 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-----------------------hhhhcccc---------
Confidence 4568999999999999999999999999999999987764 46788998
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|..+.|++..+ +++++|.|.+|+||+..+++++.++.+|.+- |. +..|+|....+
T Consensus 94 ---DYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHY--------VM-------cAqFhptEDlI--- 150 (1202)
T KOG0292|consen 94 ---DYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHY--------VM-------CAQFHPTEDLI--- 150 (1202)
T ss_pred ---ceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceE--------EE-------eeccCCccceE---
Confidence 7799999987644 9999999999999999999999999998664 44 67889988887
Q ss_pred cccccCccccCCCCCceeeeceeeeccccc---c-------------------ccccceeeccccccceEEEEeCCCCCE
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETN---L-------------------VAGCRRIYAHAHDYHINSISNNSDGET 247 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (408)
++++-|.+|++|| +.+.... + ....++-.+.+|+..|+.++|+|.-.+
T Consensus 151 ---------VSaSLDQTVRVWD-isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 151 ---------VSASLDQTVRVWD-ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred ---------EEecccceEEEEe-ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 9999999999999 6542211 0 011223345899999999999999999
Q ss_pred EEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc
Q 015363 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (408)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (408)
+++| +|..|++|.... .+..+. .+..+|...|.++-|+|.. .++++.+.|++|++||+...+.+ +++.
T Consensus 221 iVSG~DDRqVKlWrmne-tKaWEv-----DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v----~tfr 289 (1202)
T KOG0292|consen 221 IVSGADDRQVKLWRMNE-TKAWEV-----DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSV----QTFR 289 (1202)
T ss_pred EEecCCcceeeEEEecc-ccceee-----hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccce----eeee
Confidence 9999 999999999984 444443 3478999999999999998 89999999999999999887544 6665
Q ss_pred cccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~ 371 (408)
... ...+.++-+|..+++++|.|+.+.+|.+..
T Consensus 290 ren------------dRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 290 REN------------DRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred ccC------------CeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 442 578889999999999999887778888864
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.5e-30 Score=220.39 Aligned_cols=253 Identities=14% Similarity=0.219 Sum_probs=209.5
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
..+++.|.++.|+|...+++++-.+|.|.||+.++... +..+.-.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----------------------VksfeV~~----------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----------------------VKSFEVSE----------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----------------------eeeeeecc-----------
Confidence 35889999999999999999999999999999988764 34555555
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
-+|.+..|... .+++++|+.|..|++++..+.+.+..+..|.+- +. +++.+|...++
T Consensus 56 -~PvRa~kfiaR--knWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy--------IR-------~iavHPt~P~v----- 112 (794)
T KOG0276|consen 56 -VPVRAAKFIAR--KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY--------IR-------SIAVHPTLPYV----- 112 (794)
T ss_pred -cchhhheeeec--cceEEEecCCceEEEEecccceeeEEeeccccc--------ee-------eeeecCCCCeE-----
Confidence 67999999876 449999999999999999999988888776432 33 57777777776
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
++++.|-.|++|+ +.. ...|.+++ .+|...|.+++|+|. .+.||++ -|++|++|.+..+...+
T Consensus 113 -------LtsSDDm~iKlW~--we~----~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf- 177 (794)
T KOG0276|consen 113 -------LTSSDDMTIKLWD--WEN----EWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF- 177 (794)
T ss_pred -------EecCCccEEEEee--ccC----ceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce-
Confidence 9999999999999 332 24566666 999999999999995 4789998 89999999999555444
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCC-CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
++.+|...|.++.|-+-| ..+|++|+.|.+|+|||.++...+ .+++|| ...|..+.
T Consensus 178 -------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV----~TLeGH------------t~Nvs~v~ 234 (794)
T KOG0276|consen 178 -------TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV----QTLEGH------------TNNVSFVF 234 (794)
T ss_pred -------eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH----HHhhcc------------cccceEEE
Confidence 378999999999998765 259999999999999999998554 788888 47899999
Q ss_pred EccCCCEEEEeC-CCeEEEEECCCCCCceeeee
Q 015363 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~ 380 (408)
|+|.-..+++|+ ||+++||+..+ .+..+++.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~T-y~lE~tLn 266 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKT-YKLEKTLN 266 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcc-eehhhhhh
Confidence 999999999997 69999999987 45544443
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.3e-29 Score=194.14 Aligned_cols=245 Identities=13% Similarity=0.205 Sum_probs=194.0
Q ss_pred ceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-ccCCcccccccc
Q 015363 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~ 108 (408)
..+|.+.|..++|+|- |..||+|+.|..|+||+...+. .+.+...+ .+|+
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk-------- 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK-------- 61 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch--------
Confidence 3478999999999998 9999999999999999987532 12233333 3566
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE--EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
..|.+++|+|. |++|++++.|.++.||.-..++. ..++++|.+ .|. +++|+++|.+|
T Consensus 62 ----rsVRsvAwsp~--g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn--------EVK-------~Vaws~sG~~L 120 (312)
T KOG0645|consen 62 ----RSVRSVAWSPH--GRYLASASFDATVVIWKKEDGEFECVATLEGHEN--------EVK-------CVAWSASGNYL 120 (312)
T ss_pred ----heeeeeeecCC--CcEEEEeeccceEEEeecCCCceeEEeeeecccc--------cee-------EEEEcCCCCEE
Confidence 77999999877 88999999999999998876654 445555533 344 79999999998
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (408)
+++++|+.|.+|. +.. .....|...+ +.|...|..+.|+|...+|+++ .|.+|++|+-....
T Consensus 121 ------------ATCSRDKSVWiWe-~de---ddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd 183 (312)
T KOG0645|consen 121 ------------ATCSRDKSVWIWE-IDE---DDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD 183 (312)
T ss_pred ------------EEeeCCCeEEEEE-ecC---CCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC
Confidence 9999999999999 442 1234455554 8999999999999999999999 89999999887322
Q ss_pred c--eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 266 Q--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 266 ~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
. +.+ ++.+|...|.+++|+|.| ..|++++.|++++||-..+. +. ..|+..
T Consensus 184 dW~c~~-------tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~---------~~-----------~~~sr~ 235 (312)
T KOG0645|consen 184 DWECVQ-------TLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD---------LS-----------GMHSRA 235 (312)
T ss_pred CeeEEE-------EecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC---------cc-----------hhcccc
Confidence 2 232 378899999999999999 99999999999999986633 11 112467
Q ss_pred eEEEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363 344 ISDIKFARNGRHILSR-DYMTLKLWDINM 371 (408)
Q Consensus 344 i~~~~~spdg~~l~s~-~d~~v~~wd~~~ 371 (408)
+..+.|. .-.|+++ .|+.|++|.-..
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecC
Confidence 8999998 4577876 689999998764
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.1e-28 Score=209.03 Aligned_cols=281 Identities=15% Similarity=0.235 Sum_probs=201.8
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
-+|..+++-..|+|.|.|+|+|...|.|||||....+.. +..+++.-.
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi---------------------LKnef~v~a----------- 103 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI---------------------LKNEFQVLA----------- 103 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCccee---------------------eeeeeeecc-----------
Confidence 368899999999999999999999999999998764321 233444444
Q ss_pred ccceeEEEEeecCCCcEEEEEeC--CC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 112 EEKINKIRWCQSANSALYLLSTN--DK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~--d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
++|.++.|. .++.++++.++ ++ .+.+||.- .....+..+.. .+. ++.+-|...+-
T Consensus 104 -G~I~Di~Wd--~ds~RI~avGEGrerfg~~F~~DSG--~SvGei~GhSr--------~in-------s~~~KpsRPfR- 162 (603)
T KOG0318|consen 104 -GPIKDISWD--FDSKRIAAVGEGRERFGHVFLWDSG--NSVGEITGHSR--------RIN-------SVDFKPSRPFR- 162 (603)
T ss_pred -cccccceeC--CCCcEEEEEecCccceeEEEEecCC--Cccceeeccce--------eEe-------eeeccCCCceE-
Confidence 789999995 55888888753 33 45566654 33333333321 122 34444443322
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
+++++.|+.|.+|+ .+.-+....+ ..|..-|+++.|+|||..||++ .||+|.+||=.++++
T Consensus 163 ----------i~T~sdDn~v~ffe-------GPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 163 ----------IATGSDDNTVAFFE-------GPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred ----------EEeccCCCeEEEee-------CCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 48999999999988 2222333333 7888999999999999999998 999999999987666
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc------------------------
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS------------------------ 322 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------ 322 (408)
.-.+- .-.+|.+.|..++|+||+ ..+++++.|.+++|||+.+.+++..-.
T Consensus 225 vg~l~-----~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 225 VGELE-----DSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred EEEec-----CCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 55431 145899999999999999 999999999999999998875441000
Q ss_pred ---cccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeee-eecccccceEE
Q 015363 323 ---KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKVM 390 (408)
Q Consensus 323 ---~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~ 390 (408)
-.+-....+.+..++.+|...|++++.+||+++|++|+ ||.|.-|+..+ +..-+.. ++|......+.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS-GTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC-ccccccccccccceEEEEe
Confidence 01111223346677899999999999999999999998 79999999987 3433332 45554444443
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=207.63 Aligned_cols=268 Identities=15% Similarity=0.200 Sum_probs=211.3
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
...|.+.|+-+.||++|++||+++.|.+..||++.... .+++..++.+|.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~---------- 269 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS---------- 269 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc----------
Confidence 34699999999999999999999999999999976543 345677888998
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
.+|..+.|+|+ ..++++|+.|..+++||+.+++......... +.+..+++|.|||..+
T Consensus 270 --~~V~yi~wSPD--dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~--------------~~S~~sc~W~pDg~~~---- 327 (519)
T KOG0293|consen 270 --QPVSYIMWSPD--DRYLLACGFDEVLSLWDVDTGDLRHLYPSGL--------------GFSVSSCAWCPDGFRF---- 327 (519)
T ss_pred --CceEEEEECCC--CCeEEecCchHheeeccCCcchhhhhcccCc--------------CCCcceeEEccCCcee----
Confidence 88999999766 7799999999999999999998776554431 1233378999999998
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
++|+.|+.+..|| +.+... ...+ ......|.+++..+||+++++. .|..|++|+.++. ....
T Consensus 328 --------V~Gs~dr~i~~wd-lDgn~~-~~W~------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~ 390 (519)
T KOG0293|consen 328 --------VTGSPDRTIIMWD-LDGNIL-GNWE------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRG 390 (519)
T ss_pred --------EecCCCCcEEEec-CCcchh-hccc------ccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhc
Confidence 9999999999999 433211 1111 1112568999999999999887 9999999999843 3322
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
+ .....+|++.+.+.++ +++.+.-.+..|.+||+.....+ ..+.||... ..|..-+|
T Consensus 391 l--------ise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv----~kY~Ghkq~----------~fiIrSCF 447 (519)
T KOG0293|consen 391 L--------ISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLV----RKYFGHKQG----------HFIIRSCF 447 (519)
T ss_pred c--------ccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHH----HHhhccccc----------ceEEEecc
Confidence 2 2235679999999999 88888888999999999977554 677777531 34555567
Q ss_pred cc-CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe
Q 015363 350 AR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH 391 (408)
Q Consensus 350 sp-dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~ 391 (408)
-- +..++++|+ |+.|+||+..+ ++++.++.||....+++..
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSW 490 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEec
Confidence 65 558999997 69999999998 8999999999987777653
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.3e-29 Score=204.09 Aligned_cols=279 Identities=18% Similarity=0.232 Sum_probs=207.3
Q ss_pred eecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccC
Q 015363 20 SQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (408)
Q Consensus 20 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h 99 (408)
.+-+--+.+.+.+.|.++|.++... +++|++|++||+++|||..+.. ...+.+|
T Consensus 90 v~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~------------------------~~~~~Gh 143 (423)
T KOG0313|consen 90 VEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS------------------------IKTIVGH 143 (423)
T ss_pred EEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce------------------------EEEEecC
Confidence 3333344455667899999999987 7899999999999999987653 4578899
Q ss_pred CcccccccccccccceeEEEEeec-CCCcEEEEEeCCCeEEEEEcCCCcEEE----EeccCCCCcccCCCCCeEeecCCc
Q 015363 100 EPEFDYLKSLEIEEKINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKK----VFDWNVHPEKAAGNGPIFGSHVSA 174 (408)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~l~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~ 174 (408)
. ++|.+++|.-. +....|++++.|.++++|..+.++... ...+|. ..|.
T Consensus 144 t------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk--------~~V~------ 197 (423)
T KOG0313|consen 144 T------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK--------RSVD------ 197 (423)
T ss_pred C------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc--------ccee------
Confidence 8 78998888632 223369999999999999998765332 222322 2333
Q ss_pred eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc-------------------ccccccceeeccccccc
Q 015363 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-------------------NLVAGCRRIYAHAHDYH 235 (408)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 235 (408)
++...++|..+ ++++.|..|++|+ ...... .....++-. +.+|..+
T Consensus 198 -sVsv~~sgtr~------------~SgS~D~~lkiWs-~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt-l~GHt~~ 262 (423)
T KOG0313|consen 198 -SVSVDSSGTRF------------CSGSWDTMLKIWS-VETDEEDELESSSNRRRKKQKREKEGGTRTPLVT-LEGHTEP 262 (423)
T ss_pred -EEEecCCCCeE------------Eeecccceeeecc-cCCCccccccccchhhhhhhhhhhcccccCceEE-ecccccc
Confidence 57778888876 9999999999999 332110 112223333 4899999
Q ss_pred eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 314 (408)
|.++.|++ ...+.++ .|.+|+.||+.+.+....+ . -...+.++.++|.. .+|++|+.|..|++||.|+
T Consensus 263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~--------~-~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL--------T-TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred eeeEEEcC-CCceEeecccceEEEEEeecccceeee--------e-cCcceeEeeccccc-ceeeecCCCCceeecCCCC
Confidence 99999998 4455666 8999999999966655443 2 25568999999998 9999999999999999998
Q ss_pred CceecccccccccccCCCCccccccccceeEEEEEccCCCE-EEEeC-CCeEEEEECCCCCCceeeeeecccccceE
Q 015363 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKV 389 (408)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~-l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 389 (408)
+.- .+. .+.|.+|...|.++.|+|...+ |++++ |+++++||+++...++..+.+|..-...+
T Consensus 332 ~~g------s~v-------~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 332 GDG------SVV-------SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV 395 (423)
T ss_pred CCC------cee-------EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence 742 111 2235566789999999997654 56676 79999999999766999999996544433
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=205.24 Aligned_cols=241 Identities=13% Similarity=0.212 Sum_probs=201.8
Q ss_pred cccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccC
Q 015363 83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (408)
Q Consensus 83 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 162 (408)
...+++.+++...+++|. +.|.|+++-|. +++|++|+.|++|+|||+.+++++..+.++...
T Consensus 134 rPeWHapwKl~rVi~gHl------------gWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~LkltltGhi~~---- 195 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHL------------GWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQLKLTLTGHIET---- 195 (460)
T ss_pred CccccCcceehhhhhhcc------------ceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeEEEeecchhhe----
Confidence 345777888999999999 77999999654 789999999999999999999998888776432
Q ss_pred CCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC
Q 015363 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242 (408)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 242 (408)
+. .+++++-..++ |+++.|+.|+.|| +.. .+.++.+ .+|-..|.+++.+
T Consensus 196 ----vr-------~vavS~rHpYl------------Fs~gedk~VKCwD-Le~------nkvIR~Y-hGHlS~V~~L~lh 244 (460)
T KOG0285|consen 196 ----VR-------GVAVSKRHPYL------------FSAGEDKQVKCWD-LEY------NKVIRHY-HGHLSGVYCLDLH 244 (460)
T ss_pred ----ee-------eeeecccCceE------------EEecCCCeeEEEe-chh------hhhHHHh-ccccceeEEEecc
Confidence 22 47778777777 9999999999999 433 2333443 7999999999999
Q ss_pred CCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc
Q 015363 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (408)
Q Consensus 243 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 321 (408)
|.-..|++| .|.++++||+++..+... +.+|...|.++.+.|.. ..+++|+.|++|++||++.++..
T Consensus 245 PTldvl~t~grDst~RvWDiRtr~~V~~--------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~--- 312 (460)
T KOG0285|consen 245 PTLDVLVTGGRDSTIRVWDIRTRASVHV--------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM--- 312 (460)
T ss_pred ccceeEEecCCcceEEEeeecccceEEE--------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee---
Confidence 999999999 999999999996554432 78999999999999988 67899999999999999999654
Q ss_pred ccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM 398 (408)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (408)
.++..| ...|.+++.+|.-..+|+++-..|+-|++.. |..++.+.+|......+....++-++
T Consensus 313 -~tlt~h------------kksvral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~iintl~~nsD~v~~ 375 (460)
T KOG0285|consen 313 -ITLTHH------------KKSVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAIINTLSVNSDGVLV 375 (460)
T ss_pred -Eeeecc------------cceeeEEecCCchhhhhccCCccceeccCCc-cchhhccccccceeeeeeeccCceEE
Confidence 555555 4789999999999999999866999999997 89999999999998888765555543
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.1e-29 Score=224.70 Aligned_cols=248 Identities=17% Similarity=0.302 Sum_probs=198.8
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+..+|...|++++|+|+++++++|+.|++|+|||+... .+.+..+.+|.
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~----------------------~~~~~~l~gH~--------- 246 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD----------------------GRNLKTLKGHS--------- 246 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeeccCC----------------------CeEEEEecCCC---------
Confidence 33689999999999999999999999999999998433 12467899999
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|++++|+|. |+++++|+.|++|++||++++++...+..+... +. .++|++++..+
T Consensus 247 ---~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--------is-------~~~f~~d~~~l--- 303 (456)
T KOG0266|consen 247 ---TYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--------IS-------GLAFSPDGNLL--- 303 (456)
T ss_pred ---CceEEEEecCC--CCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--------eE-------EEEECCCCCEE---
Confidence 77999999766 789999999999999999999999988887543 33 68999999998
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeecccccc--ceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
++++.|+.|++|| +...... +.+.+ ..+.. .++++.|+|++.+++++ .|+.+++||+....
T Consensus 304 ---------~s~s~d~~i~vwd-~~~~~~~----~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~- 367 (456)
T KOG0266|consen 304 ---------VSASYDGTIRVWD-LETGSKL----CLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK- 367 (456)
T ss_pred ---------EEcCCCccEEEEE-CCCCcee----eeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-
Confidence 8889999999999 5443211 22332 33333 59999999999999999 89999999999443
Q ss_pred eeeEeecCCCcccCCcCC---eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 267 SFNIVDVKPANMEDLTEV---ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
.... ..+|... +.+...++.+ .++++|+.|+.|.+||+.++..+ ..+.+|. ...
T Consensus 368 ~~~~-------~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~----~~l~~h~-----------~~~ 424 (456)
T KOG0266|consen 368 SVGT-------YTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGIL----QRLEGHS-----------KAA 424 (456)
T ss_pred ceee-------ecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchh----hhhcCCC-----------CCc
Confidence 3332 3445443 3445557788 99999999999999999987544 5666662 367
Q ss_pred eEEEEEccCCCEEEEeC---CCeEEEEECC
Q 015363 344 ISDIKFARNGRHILSRD---YMTLKLWDIN 370 (408)
Q Consensus 344 i~~~~~spdg~~l~s~~---d~~v~~wd~~ 370 (408)
+..+.|+|...++++++ |+.+++|..+
T Consensus 425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999874 6999999864
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.1e-27 Score=233.37 Aligned_cols=257 Identities=14% Similarity=0.220 Sum_probs=190.5
Q ss_pred ccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 29 ~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
+....|.+.|.+++|+|+|++||+|+.|+.|+||+.......+.. ..+ ....+.+ .
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--------------~~~-~~~~~~~-~-------- 532 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--------------IHY-PVVELAS-R-------- 532 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--------------ccc-ceEEecc-c--------
Confidence 345569999999999999999999999999999997542110000 000 0111222 2
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc-CCCeee
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGE 187 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~ 187 (408)
..|.+++|+|. .+.+|++++.||+|++||+.+++....+..+. +.|. ++.|+| ++..+
T Consensus 533 ----~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~--------~~V~-------~l~~~p~~~~~L- 591 (793)
T PLN00181 533 ----SKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTEMKEHE--------KRVW-------SIDYSSADPTLL- 591 (793)
T ss_pred ----CceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEEecCCC--------CCEE-------EEEEcCCCCCEE-
Confidence 56899999763 35689999999999999999888777665543 3455 789986 67776
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC-CCCCEEEEe-cCCeEEEEeCCCCC
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISN 265 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~d~~i~iwd~~~~~ 265 (408)
++++.|+.|++|| +... .+...+ .. ...+.++.|+ +++.+|++| .|+.|++||++...
T Consensus 592 -----------~Sgs~Dg~v~iWd-~~~~------~~~~~~-~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 592 -----------ASGSDDGSVKLWS-INQG------VSIGTI-KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred -----------EEEcCCCEEEEEE-CCCC------cEEEEE-ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 9999999999999 5432 222332 22 3578899995 578999999 99999999998554
Q ss_pred ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce--ecccccccccccCCCCccccccccce
Q 015363 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
..... +.+|...|.++.|. ++ .+|++++.|++|++||++.... ...++..+. +|...
T Consensus 652 ~~~~~-------~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~------------gh~~~ 710 (793)
T PLN00181 652 LPLCT-------MIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFM------------GHTNV 710 (793)
T ss_pred ccceE-------ecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEc------------CCCCC
Confidence 33332 56799999999997 55 7899999999999999985421 011223444 44678
Q ss_pred eEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 344 ISDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 344 i~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
+..++|+|++.+|++|+ |+.|++|+...
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 99999999999999996 69999999875
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.1e-29 Score=222.78 Aligned_cols=260 Identities=15% Similarity=0.263 Sum_probs=208.9
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
.+..|..++|+|...+++++-..|.|++||..-+. ++..|..|. +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------li~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------LIDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------HHhhhhccC------------C
Confidence 35678999999999999999999999999987665 345788888 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
+|..++|+|+ ..+|++|+.|..|++|+..+.++...+.+|.+- |. .+.|++.-..|
T Consensus 53 pVRgv~FH~~--qplFVSGGDDykIkVWnYk~rrclftL~GHlDY--------VR-------t~~FHheyPWI------- 108 (1202)
T KOG0292|consen 53 PVRGVDFHPT--QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--------VR-------TVFFHHEYPWI------- 108 (1202)
T ss_pred ccceeeecCC--CCeEEecCCccEEEEEecccceehhhhccccce--------eE-------EeeccCCCceE-------
Confidence 8999999887 459999999999999999999988887777542 33 45666666665
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee---
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN--- 269 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~--- 269 (408)
++++.|.+|++|+ -+..+|+..+ .+|...|.|..|+|....++++ -|.+|++||+..-++...
T Consensus 109 -----lSASDDQTIrIWN-------wqsr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 109 -----LSASDDQTIRIWN-------WQSRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred -----EEccCCCeEEEEe-------ccCCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 9999999999999 2335566665 9999999999999999999999 799999999863111000
Q ss_pred --------------Eee----cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363 270 --------------IVD----VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (408)
Q Consensus 270 --------------~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (408)
++. +-...+.+|...|.-++|+|.- .++++|+.|+.|++|.+...+ .++..
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetK-------aWEvD--- 244 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETK-------AWEVD--- 244 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccc-------ceeeh---
Confidence 000 0002368899999999999999 899999999999999987653 22222
Q ss_pred CCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363 332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~ 381 (408)
++.+|...|.++-|+|...+|++.+ |++|++||+.. .+.+++|+.
T Consensus 245 ----tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrr 290 (1202)
T KOG0292|consen 245 ----TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRR 290 (1202)
T ss_pred ----hhhcccCCcceEEecCccceeEecCCCccEEEEeccc-ccceeeeec
Confidence 3456678999999999989999875 79999999997 678888854
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=190.50 Aligned_cols=255 Identities=15% Similarity=0.267 Sum_probs=201.2
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+..+|...|.+++|+.+|..||+|+.|+++++|+++..+.. ......+|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~--------- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT--------- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC---------
Confidence 45678999999999999999999999999999999866421 223467787
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|-.++|.|..+ .+|++++.|.+|++||.+.+++.......... + .+.|+|+|+++
T Consensus 65 ---~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~~en--------i--------~i~wsp~g~~~--- 121 (313)
T KOG1407|consen 65 ---DSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCTARIETKGEN--------I--------NITWSPDGEYI--- 121 (313)
T ss_pred ---cchhhheeCCCCC-cceEEecCCceEEEEEeccCcEEEEeeccCcc--------e--------EEEEcCCCCEE---
Confidence 6799999998654 48999999999999999999988766654322 2 48999999998
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
+.++.|..|...| .+....... ......++.++|+.++.+|+.. ..|.|.|.....-+ .+
T Consensus 122 ---------~~~~kdD~it~id-~r~~~~~~~--------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-pv 182 (313)
T KOG1407|consen 122 ---------AVGNKDDRITFID-ARTYKIVNE--------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-PV 182 (313)
T ss_pred ---------EEecCcccEEEEE-ecccceeeh--------hcccceeeeeeecCCCCEEEEecCCceEEEEeccccc-cc
Confidence 8899999999888 443222111 2233567889999888888877 78999999887333 33
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
. ++..|.....||.|+|+| ++||+|+.|..+.+||+...- |. +.+..++ =+|..+.
T Consensus 183 ~-------si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi-C~---R~isRld------------wpVRTlS 238 (313)
T KOG1407|consen 183 Q-------SIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI-CE---RCISRLD------------WPVRTLS 238 (313)
T ss_pred c-------ccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh-hh---eeecccc------------CceEEEE
Confidence 2 378899999999999999 999999999999999998652 32 4444443 4799999
Q ss_pred EccCCCEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~ 381 (408)
||-||++||+|+ |..|-|=++.+ |..+..++.
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vet-Gd~~~eI~~ 271 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVET-GDRVWEIPC 271 (313)
T ss_pred eccCcceeeccCccceEEeEeccc-CCeEEEeec
Confidence 999999999997 69998888887 666666654
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=7.9e-29 Score=195.93 Aligned_cols=247 Identities=13% Similarity=0.206 Sum_probs=193.1
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+|.++|..+.|.+|++.|++++.|.+|+.||.++++. ...+++|.
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~-----------------------~rk~k~h~--------- 132 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR-----------------------IRKHKGHT--------- 132 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee-----------------------eehhcccc---------
Confidence 3458999999999999999999999999999999998874 35678887
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.-|+.+.-+. -+-.++.+++.|+++++||++..+..+++..... +. ++.|..++..+
T Consensus 133 ---~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq---------lt-------Av~f~d~s~qv--- 189 (338)
T KOG0265|consen 133 ---SFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ---------LT-------AVGFKDTSDQV--- 189 (338)
T ss_pred ---ceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhcccccee---------EE-------EEEecccccce---
Confidence 5577777332 2234677788999999999998887776633221 22 68888888887
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc--
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-- 266 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-- 266 (408)
++|+-|+.|++|| +++.+.. .. +.+|...|+.+..+|+|.++.+- .|.++++||++....
T Consensus 190 ---------~sggIdn~ikvWd-~r~~d~~------~~-lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 190 ---------ISGGIDNDIKVWD-LRKNDGL------YT-LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred ---------eeccccCceeeec-cccCcce------EE-eecccCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence 9999999999999 6554433 33 58999999999999999999997 899999999984322
Q ss_pred -eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363 267 -SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (408)
Q Consensus 267 -~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (408)
++.++.-. ...-......++|+|++ ..+.+|+.|..+++||......+ +.+++| .+.|+
T Consensus 253 R~v~if~g~---~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~l----yklpGh------------~gsvn 312 (338)
T KOG0265|consen 253 RCVKIFQGH---IHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRIL----YKLPGH------------YGSVN 312 (338)
T ss_pred ceEEEeecc---hhhhhhhcceeeccCCC-CccccccccceEEEeecccccEE----EEcCCc------------ceeEE
Confidence 33332111 11112234578999999 99999999999999999876554 677777 58999
Q ss_pred EEEEccCCCEEEEe-CCCeEEEEE
Q 015363 346 DIKFARNGRHILSR-DYMTLKLWD 368 (408)
Q Consensus 346 ~~~~spdg~~l~s~-~d~~v~~wd 368 (408)
+++|+|...+|.++ +|.+|++=.
T Consensus 313 ~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EeeecCCCcEEEEeccCceeEeec
Confidence 99999999999998 589888643
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.6e-29 Score=191.88 Aligned_cols=245 Identities=16% Similarity=0.261 Sum_probs=194.5
Q ss_pred eccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 34 EVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 34 h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
-.+.+..++|+++ .+.+++++.||.++|||..... ..+..++.|.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------------~Pi~~~kEH~------------ 104 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------------KPIHKFKEHK------------ 104 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------------cchhHHHhhh------------
Confidence 4678999999997 6688999999999999954332 2466788898
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..|.++.|++. ++..+++++.|++|++|+...+..++++..+. ..|+ ...|+|....+
T Consensus 105 ~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--------~~Iy-------~a~~sp~~~nl------ 162 (311)
T KOG0277|consen 105 REVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN--------SCIY-------QAAFSPHIPNL------ 162 (311)
T ss_pred hheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecCCc--------cEEE-------EEecCCCCCCe------
Confidence 55999999864 45678888999999999999988888877753 3455 56788865544
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
+++++.|+.+++|| ++.. ++... +..|...+.++.|+.- .+.|++| .|+.|++||++..+.++..
T Consensus 163 -----fas~Sgd~~l~lwd-vr~~-----gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 163 -----FASASGDGTLRLWD-VRSP-----GKFMS--IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred -----EEEccCCceEEEEE-ecCC-----CceeE--EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence 58999999999999 5443 22222 3788899999999975 5677888 8999999999976665443
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
+.+|.-.|+.++|+|....+||+++.|-+++|||...+..+ +.+... |+.-+..+.||
T Consensus 230 -------L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---~e~~~~------------HtEFv~g~Dws 287 (311)
T KOG0277|consen 230 -------LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---IETVDH------------HTEFVCGLDWS 287 (311)
T ss_pred -------ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh---hhhhhc------------cceEEeccccc
Confidence 68899999999999998889999999999999999866433 133333 46789999999
Q ss_pred c-CCCEEEEeC-CCeEEEEEC
Q 015363 351 R-NGRHILSRD-YMTLKLWDI 369 (408)
Q Consensus 351 p-dg~~l~s~~-d~~v~~wd~ 369 (408)
+ ++.++|+++ |..++||+-
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 8 567888875 899999984
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4e-28 Score=213.94 Aligned_cols=284 Identities=11% Similarity=0.148 Sum_probs=227.3
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+..+|...|.++++|.+...+++|+. +.|+||+.++.++ +.++..
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kc-----------------------iRTi~~----------- 412 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKC-----------------------IRTITC----------- 412 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcce-----------------------eEEecc-----------
Confidence 45689999999999999998888865 5899999987764 233333
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+.+..|.|. +.++++|...|.+.++|+.+.........| +|.++ .++.+||++..
T Consensus 413 ---~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH--------dgaIW-------si~~~pD~~g~--- 469 (888)
T KOG0306|consen 413 ---GYILASKFVPG--DRYIVLGTKNGELQVFDLASASLVETIRAH--------DGAIW-------SISLSPDNKGF--- 469 (888)
T ss_pred ---ccEEEEEecCC--CceEEEeccCCceEEEEeehhhhhhhhhcc--------cccee-------eeeecCCCCce---
Confidence 34889999865 779999999999999999988766655544 55677 78999999987
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeec------cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA------HAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (408)
++++.|.+|++|+ ..-... ..+...+.+. -.-...|.|+++||||++||++ -|.+|++|-++
T Consensus 470 ---------vT~saDktVkfWd-f~l~~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 470 ---------VTGSADKTVKFWD-FKLVVS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred ---------EEecCCcEEEEEe-EEEEec-cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 9999999999999 433222 1111111110 1234678999999999999999 99999999998
Q ss_pred CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (408)
+.+-.+ ++-+|.-+|.||..+||+ .++++|+.|..|++|-+.-|..- +.+-+| ..
T Consensus 539 tlKFfl--------sLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCH----KS~fAH------------dD 593 (888)
T KOG0306|consen 539 TLKFFL--------SLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCH----KSFFAH------------DD 593 (888)
T ss_pred ceeeee--------eecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhh----hhhhcc------------cC
Confidence 443333 368999999999999999 99999999999999999887543 566666 57
Q ss_pred eeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee---eeceeeecC
Q 015363 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG---LDNIHTLYE 408 (408)
Q Consensus 343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~ 408 (408)
.|.++.|-|+..++.+++ |+.|+-||-.+ -..++++.+|.....++...-.+.++. -|..-+|||
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhh-hhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 899999999988888876 89999999998 699999999999999998777776653 377778886
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=208.05 Aligned_cols=298 Identities=17% Similarity=0.161 Sum_probs=211.2
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
.|+..|+++++.|.|-.|++|+.|-+|++||+.+..... +.++.+.....|.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~----------------~~fr~l~P~E~h~------------ 216 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM----------------RSFRQLQPCETHQ------------ 216 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccc----------------hhhhccCcccccc------------
Confidence 478889999999999999999999999999998876421 1233444455566
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-ccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-KAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
|+++.|+|+ |..|++.+.....+|+|-...+.....++..... .....|.+. ...+.+|+|..+..
T Consensus 217 --i~sl~ys~T--g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia----~lt~g~whP~~k~~----- 283 (641)
T KOG0772|consen 217 --INSLQYSVT--GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIA----ELTCGCWHPDNKEE----- 283 (641)
T ss_pred --cceeeecCC--CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCcee----eeeccccccCcccc-----
Confidence 999999876 6688888888899999988877766665533221 111122221 12367889887765
Q ss_pred cccCccccCCCCCceeeeceeeeccc-cccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQE-TNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+++++.|+++++|+ +.+.. .....+.+. ..+..-.++..+|+|+++.+|+| .||.|.+|+.........
T Consensus 284 ------FlT~s~DgtlRiWd-v~~~k~q~qVik~k~--~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~ 354 (641)
T KOG0772|consen 284 ------FLTCSYDGTLRIWD-VNNTKSQLQVIKTKP--AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV 354 (641)
T ss_pred ------eEEecCCCcEEEEe-cCCchhheeEEeecc--CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc
Confidence 58999999999999 55432 211111111 12334568899999999999999 999999999863322111
Q ss_pred EeecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 270 IVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 270 ~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
+.+ -..|.. .|+|+.|+++| ++|++-+.|+++++||++..+.+ +.+..+-..+ -.-+.+
T Consensus 355 -~~v----k~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkp---L~~~tgL~t~----------~~~tdc 415 (641)
T KOG0772|consen 355 -MKV----KDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKP---LNVRTGLPTP----------FPGTDC 415 (641)
T ss_pred -eEe----eeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccc---hhhhcCCCcc----------CCCCcc
Confidence 111 345665 89999999999 99999999999999999988643 4554444221 345789
Q ss_pred EEccCCCEEEEe-----CC--CeEEEEECCCCCCceeeeeecccc-cceEEecCCCeeeee
Q 015363 348 KFARNGRHILSR-----DY--MTLKLWDINMDSGPVATFQVHEHL-RPKVMHSSKNYFMGL 400 (408)
Q Consensus 348 ~~spdg~~l~s~-----~d--~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 400 (408)
+|||+.++|++| +. +.+++||..+ -..++.+...... ..+++++--|.+++-
T Consensus 416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMT-LDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred ccCCCceEEEecccccCCCCCceEEEEeccc-eeeEEEecCCCceEEEEeecchhhheeee
Confidence 999999999997 12 7799999987 4666666554443 666776666666543
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=216.70 Aligned_cols=258 Identities=12% Similarity=0.178 Sum_probs=202.1
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
-..+|.+.|.+++...+|.+||||+.|.++++|.++.+.. ..-++....+|+
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~a~~~gH~--------- 411 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCVAQANGHT--------- 411 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhhhhhcccc---------
Confidence 3458999999999777889999999999999999854432 122345567888
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..|.+++++... -++|++++.|+++++|++...+.... ............+ ....+++.+|+.+.+
T Consensus 412 ---~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd-------KdIN~Vaia~ndkLi-- 478 (775)
T KOG0319|consen 412 ---NSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD-------KDINCVAIAPNDKLI-- 478 (775)
T ss_pred ---cccceeeecccC-ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc-------ccccceEecCCCceE--
Confidence 779999996433 35899999999999999986221111 0000000001112 222378999999998
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
++|+.|++.++|+ +.+ ...... +.+|...|.++.|+|..+.++++ .|.+|+||.+. ...+
T Consensus 479 ----------AT~SqDktaKiW~-le~------~~l~~v-LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is-~fSC 539 (775)
T KOG0319|consen 479 ----------ATGSQDKTAKIWD-LEQ------LRLLGV-LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS-TFSC 539 (775)
T ss_pred ----------Eecccccceeeec-ccC------ceEEEE-eeCCccceEEEEeccccceeEeccCCceEEEEEec-ccee
Confidence 9999999999999 532 222233 48999999999999999999999 99999999999 5667
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
+++ +.+|...|..+.|-.++ ..|++++.||.|++|+++++... .++..| ...|+++
T Consensus 540 lkT-------~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~----~tlD~H------------~DrvWaL 595 (775)
T KOG0319|consen 540 LKT-------FEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECE----MTLDAH------------NDRVWAL 595 (775)
T ss_pred eee-------ecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhh----hhhhhc------------cceeEEE
Confidence 664 89999999999999999 89999999999999999998543 677777 4789999
Q ss_pred EEccCCCEEEEe-CCCeEEEEECCC
Q 015363 348 KFARNGRHILSR-DYMTLKLWDINM 371 (408)
Q Consensus 348 ~~spdg~~l~s~-~d~~v~~wd~~~ 371 (408)
+-+|...++++| +|+.|.+|.=.+
T Consensus 596 ~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 596 SVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eecCccceeEecCCCeEEEEeecCc
Confidence 999999999998 589999996554
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=198.47 Aligned_cols=283 Identities=17% Similarity=0.178 Sum_probs=196.7
Q ss_pred CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccc--cccc-cccCCCc
Q 015363 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLE--MMDY-SMSRHPE 89 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~-~~~~~p~ 89 (408)
.-+.|+.++ ++ ...+..+|++.|+|+.||.+|.+||||.-+|.|+||+..++... .++. ..+. .+.+||.
T Consensus 87 ~AflW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~----~~~~~e~~dieWl~WHp~ 159 (399)
T KOG0296|consen 87 LAFLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ----WKLDQEVEDIEWLKWHPR 159 (399)
T ss_pred eEEEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE----EEeecccCceEEEEeccc
Confidence 457798887 34 55677899999999999999999999999999999999887642 2221 1111 3445552
Q ss_pred c--------------------ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE
Q 015363 90 F--------------------RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK 149 (408)
Q Consensus 90 ~--------------------~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~ 149 (408)
. ...+.+.||+ .++++=.|.|+ |++++++..||+|++|+..+++..
T Consensus 160 a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~------------~~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 160 AHILLAGSTDGSVWMWQIPSQALCKVMSGHN------------SPCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred ccEEEeecCCCcEEEEECCCcceeeEecCCC------------CCcccccccCC--CceEEEEecCceEEEEecCCCcee
Confidence 2 3445566777 88999999766 999999999999999999999877
Q ss_pred EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccc-cceee
Q 015363 150 KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG-CRRIY 228 (408)
Q Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~ 228 (408)
.......+... ..+.++..+..+ +.|..++.+++-. ....+...... ....+
T Consensus 226 ~~~~~~e~~~~--------------~~~~~~~~~~~~------------~~g~~e~~~~~~~-~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 226 HKITQAEGLEL--------------PCISLNLAGSTL------------TKGNSEGVACGVN-NGSGKVVNCNNGTVPEL 278 (399)
T ss_pred EEecccccCcC--------------Ccccccccccee------------EeccCCccEEEEc-cccceEEEecCCCCccc
Confidence 66553221100 034444445444 5555555555422 11000000000 00111
Q ss_pred ccccccceEEEEeCC---CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC
Q 015363 229 AHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (408)
Q Consensus 229 ~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 304 (408)
...+...+.++.+.| .=.+.|+| -||+|.|||+.... ... .-.|...|..+.|-++ .+|++++.+
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~--------~c~he~~V~~l~w~~t--~~l~t~c~~ 347 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRH--------ICEHEDGVTKLKWLNT--DYLLTACAN 347 (399)
T ss_pred cccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hhe--------eccCCCceEEEEEcCc--chheeeccC
Confidence 133444455555544 44677788 89999999998433 222 3458888999999993 689999999
Q ss_pred CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (408)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~ 370 (408)
|.|+.||.|+|.+. .++.+| ...|.+++.+|+.+++++++ |++.++|++.
T Consensus 348 g~v~~wDaRtG~l~----~~y~GH------------~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 348 GKVRQWDARTGQLK----FTYTGH------------QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEeeeccccceE----EEEecC------------chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999764 565555 57899999999999999997 5999999874
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.8e-29 Score=203.53 Aligned_cols=241 Identities=14% Similarity=0.277 Sum_probs=183.6
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
..+|++.|.|++|. .+.|++|+.|.+|+|||+++++. +..+-+|.
T Consensus 233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~-----------------------l~tlihHc---------- 277 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP-----------------------LNTLIHHC---------- 277 (499)
T ss_pred hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch-----------------------hhHHhhhc----------
Confidence 46899999999995 56999999999999999998874 45677787
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE---EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
+.|..+.|+ +| ++++++.|.++.+||+..... ..++.++... |. .+.| +.+++
T Consensus 278 --eaVLhlrf~---ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa--------VN-------vVdf--d~kyI- 333 (499)
T KOG0281|consen 278 --EAVLHLRFS---NG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--------VN-------VVDF--DDKYI- 333 (499)
T ss_pred --ceeEEEEEe---CC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhh--------ee-------eecc--ccceE-
Confidence 889999994 33 999999999999999986542 2222333211 11 1222 33465
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
++++.|.+|++|+ . ....+++++ .+|...|-|+.+ .++++++| +|.+|++||+. .+.
T Consensus 334 -----------VsASgDRTikvW~-~------st~efvRtl-~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~-~G~ 391 (499)
T KOG0281|consen 334 -----------VSASGDRTIKVWS-T------STCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGA 391 (499)
T ss_pred -----------EEecCCceEEEEe-c------cceeeehhh-hcccccceehhc--cCeEEEecCCCceEEEEecc-ccH
Confidence 9999999999999 3 345666775 899988988776 57899999 99999999999 566
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
++.+ +++|..-|.++.|+ . ..+++|+.||+|++||+.++..-. .....-+......|++.|..
T Consensus 392 cLRv-------LeGHEeLvRciRFd--~-krIVSGaYDGkikvWdl~aaldpr-------a~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 392 CLRV-------LEGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLQAALDPR-------APASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred HHHH-------HhchHHhhhheeec--C-ceeeeccccceEEEEecccccCCc-------ccccchHHHhhhhccceeEE
Confidence 6654 79999999999996 3 569999999999999998763211 01111122234567889999
Q ss_pred EEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 347 IKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 347 ~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
+.|. ...|++++ |.+|.+||+.+
T Consensus 455 LQFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 455 LQFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred Eeec--ceEEEeccCCCeEEEEEcCC
Confidence 9995 56777775 68999999986
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=8.4e-27 Score=227.18 Aligned_cols=255 Identities=14% Similarity=0.201 Sum_probs=190.7
Q ss_pred eeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
..+...|.+++|++. +.+||+++.||+|+|||+.++. .+..+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----------------------~~~~~~~H~---------- 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----------------------LVTEMKEHE---------- 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEecCCC----------
Confidence 345678999999984 7899999999999999987654 345678888
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEc-cCCCeeecc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERN 189 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~ 189 (408)
..|++++|+|. ++.+|++|+.|++|++||+.++.....+..+. .+. ++.|. ++|..+
T Consensus 576 --~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~---------~v~-------~v~~~~~~g~~l--- 633 (793)
T PLN00181 576 --KRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQGVSIGTIKTKA---------NIC-------CVQFPSESGRSL--- 633 (793)
T ss_pred --CCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCCCcEEEEEecCC---------CeE-------EEEEeCCCCCEE---
Confidence 77999999752 46799999999999999999887766554321 222 56674 567776
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC---
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN--- 265 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~--- 265 (408)
++|+.|+.|++|| +.... .+... ..+|...|.++.|. ++.+|+++ .|++|++||++...
T Consensus 634 ---------atgs~dg~I~iwD-~~~~~-----~~~~~-~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 634 ---------AFGSADHKVYYYD-LRNPK-----LPLCT-MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred ---------EEEeCCCeEEEEE-CCCCC-----ccceE-ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc
Confidence 9999999999999 54321 12223 36888999999997 67788888 99999999997432
Q ss_pred --ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 266 --QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 266 --~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
..+. .+.+|...+..++|+|++ .+|++|+.|+.|++|+......... ..+.... .........|...
T Consensus 697 ~~~~l~-------~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s--~~~~~~~-~~~~~~~~~~~~~ 765 (793)
T PLN00181 697 NETPLH-------SFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLS--YKFKTID-PVSGLEVDDASQF 765 (793)
T ss_pred CCcceE-------EEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEE--EecccCC-cccccccCCCCcE
Confidence 1222 267899999999999999 8999999999999999876532100 0111110 0000112334568
Q ss_pred eEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363 344 ISDIKFARNGRHILSRD-YMTLKLWDI 369 (408)
Q Consensus 344 i~~~~~spdg~~l~s~~-d~~v~~wd~ 369 (408)
|.+++|+|++..|++|+ +|.|++|++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999985 699999996
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.7e-28 Score=194.38 Aligned_cols=274 Identities=15% Similarity=0.249 Sum_probs=212.1
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
+..+-+.|..|||||++|++|+.||.|.+|+..+++.. +.| .|...-.|.-+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr----KDL-----------kYQAqd~fMMmd------------ 263 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR----KDL-----------KYQAQDNFMMMD------------ 263 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhh----hhh-----------hhhhhcceeecc------------
Confidence 34567889999999999999999999999999887642 221 122222333344
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
++|.|+.|+.+ .+.+|+|+.||.|++|.+++|.+++.+..... ..+. ++.|+.|+..+
T Consensus 264 ~aVlci~FSRD--sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt-------kGvt-------~l~FSrD~Sqi------ 321 (508)
T KOG0275|consen 264 DAVLCISFSRD--SEMLASGSQDGKIKVWRIETGQCLRRFDRAHT-------KGVT-------CLSFSRDNSQI------ 321 (508)
T ss_pred cceEEEeeccc--HHHhhccCcCCcEEEEEEecchHHHHhhhhhc-------cCee-------EEEEccCcchh------
Confidence 78999999754 77999999999999999999998876653211 1233 78999999998
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (408)
++++.|.++++-- ...+++.+.+ .+|...|+...|.++|..++++ .||+|++|+..+ ..+...+
T Consensus 322 ------LS~sfD~tvRiHG-------lKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~Tf 386 (508)
T KOG0275|consen 322 ------LSASFDQTVRIHG-------LKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT-TECLSTF 386 (508)
T ss_pred ------hcccccceEEEec-------cccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcc-hhhhhhc
Confidence 9999999999754 3446777776 9999999999999999999999 999999999994 4555543
Q ss_pred ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
+ ..+...+|.++-.-|.++..++++....+|.|.++... .+ +.+...+.. .+...+.+.||
T Consensus 387 k-----~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vV----rsfsSGkRE---------gGdFi~~~lSp 447 (508)
T KOG0275|consen 387 K-----PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VV----RSFSSGKRE---------GGDFINAILSP 447 (508)
T ss_pred c-----CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EE----eeeccCCcc---------CCceEEEEecC
Confidence 2 22345678899999998899999999999999998643 33 444333211 24566778999
Q ss_pred CCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363 352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVM 390 (408)
Q Consensus 352 dg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 390 (408)
.|.++++. .|+.++.|.+.+ |++-+++..|+...-.+.
T Consensus 448 kGewiYcigED~vlYCF~~~s-G~LE~tl~VhEkdvIGl~ 486 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLS-GKLERTLPVHEKDVIGLT 486 (508)
T ss_pred CCcEEEEEccCcEEEEEEeec-Cceeeeeecccccccccc
Confidence 99999986 579999999998 899999999887644443
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-28 Score=200.92 Aligned_cols=245 Identities=14% Similarity=0.183 Sum_probs=183.4
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-ccCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~ 108 (408)
..++|..+|..+.||||.++|++|+.+..+++||+.++... ..+ +++.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~-----------------------~~y~~~~~-------- 312 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR-----------------------HLYPSGLG-------- 312 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh-----------------------hhcccCcC--------
Confidence 45689999999999999999999999999999999998742 111 2222
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..+.+.+|+|+ |..+++|+.|+++..||+....... .+.... -.+. .++..+||+.+
T Consensus 313 ----~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlDgn~~~~-W~gvr~-------~~v~-------dlait~Dgk~v-- 369 (519)
T KOG0293|consen 313 ----FSVSSCAWCPD--GFRFVTGSPDRTIIMWDLDGNILGN-WEGVRD-------PKVH-------DLAITYDGKYV-- 369 (519)
T ss_pred ----CCcceeEEccC--CceeEecCCCCcEEEecCCcchhhc-cccccc-------ceeE-------EEEEcCCCcEE--
Confidence 55999999866 8899999999999999998764221 111111 1233 78999999998
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
++...|..|++|++..+. ++.. ..-..+|++++.+.+++++++. .+..+++||++.....
T Consensus 370 ----------l~v~~d~~i~l~~~e~~~-------dr~l--ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 370 ----------LLVTVDKKIRLYNREARV-------DRGL--ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV 430 (519)
T ss_pred ----------EEEecccceeeechhhhh-------hhcc--ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH
Confidence 777899999998821111 1111 1223679999999999999998 9999999999943333
Q ss_pred eeEeecCCCcccCCcCC--eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363 268 FNIVDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (408)
.+ +.+|... +-.-+|.--...++|+|+.|+.|+||+..+++.+ .++.|| +..|+
T Consensus 431 ~k--------Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll----~~LsGH------------s~~vN 486 (519)
T KOG0293|consen 431 RK--------YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL----AVLSGH------------SKTVN 486 (519)
T ss_pred HH--------hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee----EeecCC------------cceee
Confidence 22 5566543 3334554333379999999999999999999765 677666 58899
Q ss_pred EEEEccC-CCEEEEeC-CCeEEEEECCC
Q 015363 346 DIKFARN-GRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 346 ~~~~spd-g~~l~s~~-d~~v~~wd~~~ 371 (408)
+++|+|. -.++|+|+ ||+|+||....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999995 55778886 59999998764
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-26 Score=184.88 Aligned_cols=265 Identities=16% Similarity=0.268 Sum_probs=194.9
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccc------------cccCC-------------C
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY------------SMSRH-------------P 88 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------------~~~~~-------------p 88 (408)
-.+.|+++.|+++|.+|++++.|.+++|||...+.. .+.+....+ .+..+ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~----~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ----VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce----eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 367899999999999999999999999999887753 223322221 00000 1
Q ss_pred ccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeE
Q 015363 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (408)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (408)
+-++++.|.||. ..|++++.+|- ++.|++++.|++|++||++..++...+.....+
T Consensus 89 dNkylRYF~GH~------------~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p---------- 144 (311)
T KOG1446|consen 89 DNKYLRYFPGHK------------KRVNSLSVSPK--DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP---------- 144 (311)
T ss_pred cCceEEEcCCCC------------ceEEEEEecCC--CCeEEecccCCeEEeeEecCCCCceEEecCCCc----------
Confidence 445667788888 88999999876 569999999999999999988888777776554
Q ss_pred eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEE
Q 015363 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (408)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 248 (408)
..++.|+|-.+ +.+.....|++|| ++..+..+-....- ..+.....+.+.|+|+|+++
T Consensus 145 -------i~AfDp~GLif------------A~~~~~~~IkLyD-~Rs~dkgPF~tf~i--~~~~~~ew~~l~FS~dGK~i 202 (311)
T KOG1446|consen 145 -------IAAFDPEGLIF------------ALANGSELIKLYD-LRSFDKGPFTTFSI--TDNDEAEWTDLEFSPDGKSI 202 (311)
T ss_pred -------ceeECCCCcEE------------EEecCCCeEEEEE-ecccCCCCceeEcc--CCCCccceeeeEEcCCCCEE
Confidence 57899999876 6666666999999 76654322211111 12445678999999999999
Q ss_pred EEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccc
Q 015363 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (408)
Q Consensus 249 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (408)
+.+ ..+.+++.|.-.+. ....+...+ ....---+..|.|++ +++++|+.||+|.+|+++++..+ ..+.+
T Consensus 203 LlsT~~s~~~~lDAf~G~-~~~tfs~~~----~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~v----~~~~~ 272 (311)
T KOG1446|consen 203 LLSTNASFIYLLDAFDGT-VKSTFSGYP----NAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKKV----AVLRG 272 (311)
T ss_pred EEEeCCCcEEEEEccCCc-EeeeEeecc----CCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcEe----eEecC
Confidence 988 89999999988444 444433221 111112578999999 99999999999999999999765 45555
Q ss_pred ccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~ 370 (408)
. +.+.+.++.|+|.-.++++++. .+.+|=..
T Consensus 273 ~-----------~~~~~~~~~fnP~~~mf~sa~s-~l~fw~p~ 303 (311)
T KOG1446|consen 273 P-----------NGGPVSCVRFNPRYAMFVSASS-NLVFWLPD 303 (311)
T ss_pred C-----------CCCCccccccCCceeeeeecCc-eEEEEecc
Confidence 3 1467899999998777777654 78888654
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.2e-28 Score=193.48 Aligned_cols=299 Identities=17% Similarity=0.238 Sum_probs=213.1
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
..|+.++.+.+|+|||.++|||+.|-.|+|.|++...... ..+++...+ .-. .-..+.++-.|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks-~~~em~~~~-~qa---~hPvIRTlYDH~----------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS-KPKEMISGD-TQA---RHPVIRTLYDHV----------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc-chhhhccCC-ccc---CCceEeehhhcc-----------
Confidence 3699999999999999999999999999999987432210 111111000 011 123556777777
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
+.|+++.|+|. ...|+++++|++|+++|......++.++.-.. ...+. ++.|+|.|.++
T Consensus 173 -devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd------~~~vr-------siSfHPsGefl----- 231 (430)
T KOG0640|consen 173 -DEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAFKVFQD------TEPVR-------SISFHPSGEFL----- 231 (430)
T ss_pred -Ccccceeecch--hheEEeccCCCeEEEEecccHHHHHHHHHhhc------cceee-------eEeecCCCceE-----
Confidence 77999999877 67999999999999999986544433322211 11233 68999999988
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
+.|.....+++|| +...+--....+ ...|.+.|+++.+++.+++.+++ .||.|++||=- +.++++.
T Consensus 232 -------lvgTdHp~~rlYd-v~T~QcfvsanP----d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t 298 (430)
T KOG0640|consen 232 -------LVGTDHPTLRLYD-VNTYQCFVSANP----DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRT 298 (430)
T ss_pred -------EEecCCCceeEEe-ccceeEeeecCc----ccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHH
Confidence 9999999999999 544332222221 36788999999999999999999 89999999987 5566654
Q ss_pred eecCCCcccCCc-CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 271 VDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 271 ~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
+ -..|. ..|++..|..++ +++++.+.|..+++|.+.++..+ +.+.+-.. .+-..--+...|
T Consensus 299 ~------~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l----~~YtGAg~-------tgrq~~rtqAvF 360 (430)
T KOG0640|consen 299 I------GNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRML----KEYTGAGT-------TGRQKHRTQAVF 360 (430)
T ss_pred H------HhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceE----EEEecCCc-------ccchhhhhhhhh
Confidence 3 23454 558999999999 99999999999999999999654 55544311 010112244567
Q ss_pred ccCCCEEEEeCC--CeEEEEECCCCCCceeeeeecccccceEE-ecCCCeee
Q 015363 350 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKVM-HSSKNYFM 398 (408)
Q Consensus 350 spdg~~l~s~~d--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 398 (408)
.....|++.-++ +.++-||.++..+.-..--+|.+..+.+. ++...-+|
T Consensus 361 NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 361 NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred cCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee
Confidence 777778887653 89999999986555555567888755554 45555554
No 59
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.2e-27 Score=188.48 Aligned_cols=291 Identities=14% Similarity=0.182 Sum_probs=194.3
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCC-Cccc-cccc-ccccccCCCccceeeeeccCCcc----
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRR-DLEM-MDYSMSRHPEFRYKTEFQSHEPE---- 102 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~-~~~~-~~~~-~~~~~~~~p~~~~~~~~~~h~~~---- 102 (408)
...+|.+.|++++|+.||++|||++.|+.|+||++.+....- .+.| .++- ....+.+.|+.+.+...- |.+.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~-~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSV-KRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEE-ccCCEEEE
Confidence 445899999999999999999999999999999998754311 2222 2211 122456666554332110 0000
Q ss_pred --------------ccccccc----ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCC
Q 015363 103 --------------FDYLKSL----EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (408)
Q Consensus 103 --------------~~~~~~~----~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
+..+..+ .++..|..+-. ..++.+|++++.|..|.+|+++ |+.+.....+...
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~------ 230 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS------ 230 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccc------
Confidence 0000000 23344445554 4568899999999999999999 6666554443211
Q ss_pred CCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC
Q 015363 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (408)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (408)
....+.+|+|+++ ++++..-.|++|+++...++......+...+.+|...|..++|+++
T Consensus 231 ---------n~~aavSP~GRFi------------a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 231 ---------NYDAAVSPDGRFI------------AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred ---------ccceeeCCCCcEE------------EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 1146889999998 8889999999999665554432222222225899999999999999
Q ss_pred CCEEEEe-cCCeEEEEeCCCCC---ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecc
Q 015363 245 GETFISA-DDLRINLWNLEISN---QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (408)
Q Consensus 245 ~~~l~~~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 320 (408)
.+.+++. .||++++||++-.- +-..+++.-+..+..-.+....++.+|+| +.||.+ ....++++..++++..
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s-~gs~l~~~~se~g~~~-- 365 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVS-FGSDLKVFASEDGKDY-- 365 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEee-cCCceEEEEcccCccc--
Confidence 9999998 89999999986311 11111111011122223334589999999 877765 4667999999988543
Q ss_pred cccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEE
Q 015363 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD 368 (408)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd 368 (408)
..++ ..|...|.+++|+++|+++++++|..++++.
T Consensus 366 --~~~e-----------~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 366 --PELE-----------DIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred --hhHH-----------HhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 2222 2346789999999999999999999999986
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-27 Score=184.16 Aligned_cols=228 Identities=14% Similarity=0.218 Sum_probs=174.0
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
+.+.+++|+++.+ ..+++++.||++++||+... ..+..++.|.. .|+ ++.|++..+..
T Consensus 61 D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~--------EV~-------Svdwn~~~r~~----- 119 (311)
T KOG0277|consen 61 DGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR--------EVY-------SVDWNTVRRRI----- 119 (311)
T ss_pred cceeEeeecCCCc-ceEEEEecCceEEEeccCCCCcchhHHHhhhh--------heE-------Eecccccccee-----
Confidence 6799999998655 47889999999999996432 23333333322 344 56777665543
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+++++-|++|++|+ ..+ .+.+.++ .+|...|...+|+|. .+.|+++ .|+++++||++..++.+.
T Consensus 120 ------~ltsSWD~TiKLW~-~~r------~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 120 ------FLTSSWDGTIKLWD-PNR------PNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred ------EEeeccCCceEeec-CCC------CcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 47779999999999 433 2333444 899999999999996 5778887 899999999998776654
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
+..|...+.++.|+.-.++++++|+.|+.|+.||+++-+ .|+..+.+| .-.|..++|
T Consensus 186 --------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh------------~~AVRkvk~ 242 (311)
T KOG0277|consen 186 --------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGH------------GLAVRKVKF 242 (311)
T ss_pred --------EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCC------------ceEEEEEec
Confidence 467888999999999888999999999999999999764 445565555 578999999
Q ss_pred ccCC-CEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE-ecCCCeee
Q 015363 350 ARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM-HSSKNYFM 398 (408)
Q Consensus 350 spdg-~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 398 (408)
||.. ..|++++ |-+++|||...+...+.++..|.+....+. +++....+
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~v 294 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQV 294 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCcee
Confidence 9964 5778887 699999999876778888888887654443 34444444
No 61
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.2e-26 Score=206.92 Aligned_cols=280 Identities=10% Similarity=0.064 Sum_probs=190.5
Q ss_pred eeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec
Q 015363 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (408)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 97 (408)
||.+.|+.....+ .|-..|.....++++..+++++.+.....|+..++... -++...+. ... ....+.
T Consensus 5 k~rh~~g~~~k~~--~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~---~~~---~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPARPD--RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGK---LAS---NPPILL 72 (493)
T ss_pred cccccccccCCcc--cceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eecccccc---CCC---CCceEe
Confidence 5667777543322 35566777778888777888888888889987654321 00110000 000 012367
Q ss_pred cCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-------EEEeccCCCCcccCCCCCeEee
Q 015363 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-------KKVFDWNVHPEKAAGNGPIFGS 170 (408)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~ 170 (408)
+|. +.|++++|+|. ++.+|++|+.|++|++||+.++.. ...+..+ ...|.
T Consensus 73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH--------~~~V~-- 129 (493)
T PTZ00421 73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH--------TKKVG-- 129 (493)
T ss_pred CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC--------CCcEE--
Confidence 887 77999999872 366999999999999999976532 2222222 22344
Q ss_pred cCCceeeEEccCC-CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363 171 HVSAIPKSYMANG-GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (408)
Q Consensus 171 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (408)
.+.|+|++ ..+ ++++.|+.|++|| +.. ......+ ..|...|.+++|+|++.+|+
T Consensus 130 -----~l~f~P~~~~iL------------aSgs~DgtVrIWD-l~t------g~~~~~l-~~h~~~V~sla~spdG~lLa 184 (493)
T PTZ00421 130 -----IVSFHPSAMNVL------------ASAGADMVVNVWD-VER------GKAVEVI-KCHSDQITSLEWNLDGSLLC 184 (493)
T ss_pred -----EEEeCcCCCCEE------------EEEeCCCEEEEEE-CCC------CeEEEEE-cCCCCceEEEEEECCCCEEE
Confidence 68999986 455 8999999999999 543 2233333 67889999999999999999
Q ss_pred Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC-eEEEEEcCCCCceEEEEe----CCCeEEEEEcCCCceeccccc
Q 015363 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSS----SKGSIRLIDMRQSALCDTHSK 323 (408)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~ 323 (408)
++ .|+.|++||+++.. .... +.+|... +..+.|.+++ ..+++++ .|+.|++||+++.... +.
T Consensus 185 tgs~Dg~IrIwD~rsg~-~v~t-------l~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~ 252 (493)
T PTZ00421 185 TTSKDKKLNIIDPRDGT-IVSS-------VEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YS 252 (493)
T ss_pred EecCCCEEEEEECCCCc-EEEE-------EecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---ee
Confidence 99 89999999999544 3322 4556543 4567899988 5555543 4799999999876421 12
Q ss_pred ccccccCCCCccccccccceeEEEEEccCCCEEEEe--CCCeEEEEECCCCCCceeeeee
Q 015363 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
....+. ...+....|++++.+|+++ +|+.|++||+.+ ++++.....
T Consensus 253 ~~~~d~-----------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-~~~~~~~~~ 300 (493)
T PTZ00421 253 TVDLDQ-----------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN-ERLTFCSSY 300 (493)
T ss_pred EeccCC-----------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-CceEEEeec
Confidence 222221 2356667899999988876 379999999997 566665543
No 62
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2e-28 Score=198.47 Aligned_cols=281 Identities=16% Similarity=0.231 Sum_probs=194.0
Q ss_pred eeecccCcCcccceeeccceEEEEECCCC-CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec
Q 015363 19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (408)
Q Consensus 19 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 97 (408)
+...|..+..+...+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+ ...++
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~ 106 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFK 106 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheee
Confidence 34556666666778999999999999985 7899999999999999987654 46789
Q ss_pred cCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCC--cccCCCCCeEeecCCce
Q 015363 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP--EKAAGNGPIFGSHVSAI 175 (408)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~ 175 (408)
+|. +.|..|++.. +.+++++.|++|+.|.++.. ...++.....- ........+++.....+
T Consensus 107 AH~------------G~V~Gi~v~~----~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i 169 (433)
T KOG0268|consen 107 AHE------------GLVRGICVTQ----TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQI 169 (433)
T ss_pred ccc------------CceeeEEecc----cceEEecCCcceeeeeccCC-cceeeeccccccccccccccccccccCcee
Confidence 999 6799999942 47999999999999997653 22221111000 00000111121111111
Q ss_pred eeEEccCCCeeec----------c-cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC
Q 015363 176 PKSYMANGGCGER----------N-FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (408)
Q Consensus 176 ~~~~~~~~~~l~~----------~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (408)
.++--.-...+.. + .......++++++.|+.|.+|| ++. ..+.+.. .-...-+.|+|+|.
T Consensus 170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD-~R~------~~Pl~KV--i~~mRTN~IswnPe 240 (433)
T KOG0268|consen 170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD-LRQ------ASPLKKV--ILTMRTNTICWNPE 240 (433)
T ss_pred eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe-ccc------CCcccee--eeeccccceecCcc
Confidence 2221111111111 1 1111223478889999999999 433 2222221 11234568999997
Q ss_pred CCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccc
Q 015363 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (408)
Q Consensus 245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 323 (408)
.-.|++| .|..++.||++....++.. ..+|.+.|.++.|+|.| +-|++|+.|.+|+||..+.+..- .
T Consensus 241 afnF~~a~ED~nlY~~DmR~l~~p~~v-------~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SR----d 308 (433)
T KOG0268|consen 241 AFNFVAANEDHNLYTYDMRNLSRPLNV-------HKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSR----D 308 (433)
T ss_pred ccceeeccccccceehhhhhhcccchh-------hcccceeEEEeccCCCc-chhccccccceEEEeecCCCcch----h
Confidence 7778888 8999999999977766654 67899999999999999 99999999999999999877532 1
Q ss_pred ccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (408)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~ 371 (408)
.+.... .+.|.++.||-|.+|+++|+| +.|++|....
T Consensus 309 iYhtkR-----------Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 309 IYHTKR-----------MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhhHhh-----------hheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 111111 257999999999999999985 9999999875
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.1e-27 Score=216.09 Aligned_cols=284 Identities=13% Similarity=0.175 Sum_probs=206.0
Q ss_pred cceeeecccCcCcc---------cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccC
Q 015363 16 EWKFSQVFGERTAG---------EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSR 86 (408)
Q Consensus 16 ~w~~~~~~~~~~~~---------~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 86 (408)
.|...++..+.... ....|.+.|+|+.|+|||++||+|+.|+.|.||....... ..+-........
T Consensus 41 iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~-----~~~fgs~g~~~~ 115 (942)
T KOG0973|consen 41 IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS-----GTVFGSTGGAKN 115 (942)
T ss_pred eeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC-----cccccccccccc
Confidence 78877765332211 2246999999999999999999999999999999874111 011111112233
Q ss_pred CCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCC
Q 015363 87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (408)
Q Consensus 87 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
.-.++....+.+|. ..|.+++|+| ++.+|++++.|++|.+|+..+.+...++..|...
T Consensus 116 vE~wk~~~~l~~H~------------~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~-------- 173 (942)
T KOG0973|consen 116 VESWKVVSILRGHD------------SDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL-------- 173 (942)
T ss_pred cceeeEEEEEecCC------------CccceeccCC--CccEEEEecccceEEEEccccceeeeeeeccccc--------
Confidence 34677888899999 6699999976 4899999999999999999999888888887543
Q ss_pred eEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc-ccccccceeeccccccceEEEEeCCCC
Q 015363 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-NLVAGCRRIYAHAHDYHINSISNNSDG 245 (408)
Q Consensus 167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (408)
|. .+.|.|-|+++ ++-+.|++|++|+ ...-.. ....++... ..-...++.+.|+|||
T Consensus 174 VK-------Gvs~DP~Gky~------------ASqsdDrtikvwr-t~dw~i~k~It~pf~~--~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 174 VK-------GVSWDPIGKYF------------ASQSDDRTLKVWR-TSDWGIEKSITKPFEE--SPLTTFFLRLSWSPDG 231 (942)
T ss_pred cc-------ceEECCccCee------------eeecCCceEEEEE-cccceeeEeeccchhh--CCCcceeeecccCCCc
Confidence 33 68999999998 9999999999999 433111 011111110 1223457889999999
Q ss_pred CEEEEe--c---CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC--------C----Cc----eEEEEeCC
Q 015363 246 ETFISA--D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--------H----CN----MLAYSSSK 304 (408)
Q Consensus 246 ~~l~~~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------~----~~----~l~s~~~d 304 (408)
.+|++. . -.++.|.+-.+.+... .+-+|..++.+++|+|. | +. .+|+|+.|
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk~~~--------~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWKVDK--------DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred CeecchhhccCCcceeEEEecCCceeee--------eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 999986 2 3466776665333232 26789999999999982 1 01 78999999
Q ss_pred CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
++|.||.....+ |+.....-. ...|.+++|+|||..|++++ ||+|.+..+..
T Consensus 304 rSlSVW~T~~~R----Pl~vi~~lf-----------~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 304 RSLSVWNTALPR----PLFVIHNLF-----------NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ccEEEEecCCCC----chhhhhhhh-----------cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 999999986553 323222221 24799999999999999987 89999999975
No 64
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.9e-27 Score=196.51 Aligned_cols=272 Identities=17% Similarity=0.241 Sum_probs=201.4
Q ss_pred eeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
+.|.+.|+.+.+-|. ..++|+++..+.|.|||....... .. ...+.+.-..+.+|+.+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~---~~----------~~~~~~Pdl~L~gH~~e-------- 179 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK---PK----------ASGECRPDLRLKGHEKE-------- 179 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc---cc----------ccccCCCceEEEeeccc--------
Confidence 569999999999997 557888899999999998765421 00 00023344567888843
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-------EEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-------KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (408)
-.+++|++...| .+++++.|++|.+||+...... ..+..+. ..|- .++|++..
T Consensus 180 ----g~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--------~~Ve-------DV~~h~~h 239 (422)
T KOG0264|consen 180 ----GYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE--------DVVE-------DVAWHPLH 239 (422)
T ss_pred ----ccccccccccce-eEeeccCCCcEEEEeccccccCCccccceEEeecCC--------ccee-------hhhccccc
Confidence 667999987777 7899999999999999854321 1122221 1122 56777766
Q ss_pred CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeC
Q 015363 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 261 (408)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~ 261 (408)
..+ +.+++.|+.+.+|| .+.. ..++.+. ..+|...|+|++|+|-+ .+||+| .|++|++||+
T Consensus 240 ~~l-----------F~sv~dd~~L~iwD-~R~~----~~~~~~~-~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDl 302 (422)
T KOG0264|consen 240 EDL-----------FGSVGDDGKLMIWD-TRSN----TSKPSHS-VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDL 302 (422)
T ss_pred hhh-----------heeecCCCeEEEEE-cCCC----CCCCccc-ccccCCceeEEEeCCCCCceEEeccCCCcEEEeec
Confidence 654 57899999999999 5541 2333333 38999999999999975 566777 7999999999
Q ss_pred CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (408)
+...+++.. +.+|...|.++.|+|....+||+++.|+++.+||+..-..... ........+.+.++..||.
T Consensus 303 RnL~~~lh~-------~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~--~eda~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 303 RNLNKPLHT-------FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS--PEDAEDGPPELLFIHGGHT 373 (422)
T ss_pred hhcccCcee-------ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC--hhhhccCCcceeEEecCcc
Confidence 977765543 8999999999999999989999999999999999976432100 1112222355557778999
Q ss_pred ceeEEEEEccCCCEEEEe-C-CCeEEEEECC
Q 015363 342 ASISDIKFARNGRHILSR-D-YMTLKLWDIN 370 (408)
Q Consensus 342 ~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~ 370 (408)
+.|.++.|+|+..+++++ + |+.+.||+..
T Consensus 374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 374 AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999999988877654 4 6999999986
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.6e-26 Score=197.44 Aligned_cols=241 Identities=20% Similarity=0.370 Sum_probs=190.4
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
...|...+.++.|+|++++|++++.+|.|++|++.+++. ...+..|.
T Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-----------------------~~~~~~~~---------- 93 (289)
T cd00200 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC-----------------------VRTLTGHT---------- 93 (289)
T ss_pred EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc-----------------------eEEEeccC----------
Confidence 346888899999999999999999999999999886532 34566666
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
..|.++.|+|. +.++++++.|+.|++||+.+++....+..+. +.+. .+.++|++..+
T Consensus 94 --~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~i~-------~~~~~~~~~~l---- 150 (289)
T cd00200 94 --SYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHT--------DWVN-------SVAFSPDGTFV---- 150 (289)
T ss_pred --CcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCC--------CcEE-------EEEEcCcCCEE----
Confidence 67999999765 6688888889999999999777666555322 2233 68899988776
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
++++.++.|++|| +.. .+....+ ..|...+.+++|+|+++.++++ .++.|++||++. .....
T Consensus 151 --------~~~~~~~~i~i~d-~~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~ 213 (289)
T cd00200 151 --------ASSSQDGTIKLWD-LRT------GKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKCLG 213 (289)
T ss_pred --------EEEcCCCcEEEEE-ccc------cccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECCC-Cceec
Confidence 7777799999999 532 2223333 5777789999999999888888 899999999984 33332
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
. +..|...+.++.|+|++ .++++++.|+.|++||+.+++.. ..+..| ...|.+++|
T Consensus 214 ~-------~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~------------~~~i~~~~~ 269 (289)
T cd00200 214 T-------LRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECV----QTLSGH------------TNSVTSLAW 269 (289)
T ss_pred c-------hhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeE----EEcccc------------CCcEEEEEE
Confidence 2 45678899999999997 88888888999999999876543 444444 468999999
Q ss_pred ccCCCEEEEeC-CCeEEEEE
Q 015363 350 ARNGRHILSRD-YMTLKLWD 368 (408)
Q Consensus 350 spdg~~l~s~~-d~~v~~wd 368 (408)
+|++.+|++++ |+.|++|+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 99999999985 69999996
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.6e-27 Score=190.71 Aligned_cols=266 Identities=12% Similarity=0.184 Sum_probs=189.5
Q ss_pred cceeeccceEEEEECCC---CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363 30 EEVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~---~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (408)
...+|.++|.+++|... ...|++++.|.++++|.++.++.. .+.....+||+
T Consensus 139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-------------------~~~~~~~~GHk------ 193 (423)
T KOG0313|consen 139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-------------------VKALKVCRGHK------ 193 (423)
T ss_pred EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-------------------hhHHhHhcccc------
Confidence 34689999998887643 346999999999999999877642 11223345888
Q ss_pred cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCC-------CCcccCCCCCeEeec---CCcee
Q 015363 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-------HPEKAAGNGPIFGSH---VSAIP 176 (408)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~---~~~~~ 176 (408)
..|-+|... ++|..+++|+.|.+|++|+..+......-.... .........++.... .....
T Consensus 194 ------~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~ 265 (423)
T KOG0313|consen 194 ------RSVDSVSVD--SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS 265 (423)
T ss_pred ------cceeEEEec--CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence 789999985 558899999999999999943221111000000 000000011111110 22235
Q ss_pred eEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCe
Q 015363 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 255 (408)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~ 255 (408)
+.|.+.+ . +++++.|.+|+.|| +... .+...+ .....+++++.+|..++|++| .|..
T Consensus 266 V~w~d~~-v------------~yS~SwDHTIk~WD-letg------~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 266 VVWSDAT-V------------IYSVSWDHTIKVWD-LETG------GLKSTL--TTNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred EEEcCCC-c------------eEeecccceEEEEE-eecc------cceeee--ecCcceeEeecccccceeeecCCCCc
Confidence 6677633 3 39999999999999 4332 222211 223668999999999999999 9999
Q ss_pred EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcc
Q 015363 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (408)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (408)
|++||.+++...+.. .++.+|...|.++.|+|.....|++|+.|+++++||+|+.+ .|++.+.+|
T Consensus 324 irl~DPR~~~gs~v~-----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h------- 388 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVS-----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGH------- 388 (423)
T ss_pred eeecCCCCCCCceeE-----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccC-------
Confidence 999999976554333 34889999999999999998999999999999999999875 345777777
Q ss_pred ccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 336 FFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 336 ~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
...|.++.|. ++.+|++|+ |++|+++.-..
T Consensus 389 -----~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 389 -----NDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred -----CceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 4789999998 577899985 89999997653
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3e-28 Score=204.47 Aligned_cols=259 Identities=14% Similarity=0.219 Sum_probs=195.5
Q ss_pred ccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceee
Q 015363 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (408)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 94 (408)
..|++..- ..-.-...+|..+|.+++|+++|..+.+++.|+.|++||++++++. .
T Consensus 240 klW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~-----------------------~ 294 (503)
T KOG0282|consen 240 KLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL-----------------------S 294 (503)
T ss_pred EEEEEecC--cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE-----------------------E
Confidence 45666541 1222356789999999999999999999999999999999999752 3
Q ss_pred eeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCc
Q 015363 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (408)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (408)
.|... ..++|+.|.|+. .+.|++|+.|+.|+.||+++++.++....+.. .+.
T Consensus 295 ~f~~~-------------~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg--------~i~------ 346 (503)
T KOG0282|consen 295 RFHLD-------------KVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG--------AIL------ 346 (503)
T ss_pred EEecC-------------CCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhh--------hee------
Confidence 33322 458999998874 26899999999999999999987765555432 343
Q ss_pred eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC
Q 015363 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (408)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (408)
.+.|.++|+.. ++.+.++++++|+ ... ..+.+.+...+.-...++..+|++.+++.- -|
T Consensus 347 -~i~F~~~g~rF------------issSDdks~riWe-~~~------~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 347 -DITFVDEGRRF------------ISSSDDKSVRIWE-NRI------PVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred -eeEEccCCceE------------eeeccCccEEEEE-cCC------CccchhhcchhhccCcceecCCCCCeehhhccC
Confidence 68999999987 9999999999999 221 111111112222345688999999999987 89
Q ss_pred CeEEEEeCCCCCceeeEeecCCCcccCCc--CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363 254 LRINLWNLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (408)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (408)
+.|.+|.+...-+. +.. ..+.+|. +.-..+.||||| .+|++|+.||.+.+||.++-+++ ..++.|
T Consensus 407 N~i~ifs~~~~~r~-nkk----K~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl~----~~lkah--- 473 (503)
T KOG0282|consen 407 NYIAIFSTVPPFRL-NKK----KRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKLV----SKLKAH--- 473 (503)
T ss_pred ceEEEEeccccccc-CHh----hhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhhh----hccccC---
Confidence 99999997632221 111 2366665 446789999999 99999999999999999988665 666666
Q ss_pred CCccccccccceeEEEEEccCC-CEEEEeC-CCeEEEEE
Q 015363 332 GTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWD 368 (408)
Q Consensus 332 ~~~~~~~~h~~~i~~~~~spdg-~~l~s~~-d~~v~~wd 368 (408)
.+.+..+.|+|.. ..+|+|+ +|.|++|+
T Consensus 474 ---------~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 ---------DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ---------CcceEEEEecCCCcceeEecccCceeEecC
Confidence 4789999999954 4677776 89999996
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-26 Score=202.30 Aligned_cols=237 Identities=14% Similarity=0.240 Sum_probs=188.1
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc-CCccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEE 113 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~~ 113 (408)
.+.|+++.|+++|.+||+|..+|.|.|||...... ...+.+ |. .
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----------------------~~~~~~~h~------------~ 261 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----------------------TRTLRGSHA------------S 261 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----------------------cccccCCcC------------c
Confidence 78999999999999999999999999999876653 245556 66 7
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
.|-+++|. +..+.+|+.|+.|..+|++..+.... ...|. ..|. .+.|++++..+
T Consensus 262 rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~--------qeVC-------gLkws~d~~~l------ 316 (484)
T KOG0305|consen 262 RVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHR--------QEVC-------GLKWSPDGNQL------ 316 (484)
T ss_pred eeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhccc--------ceee-------eeEECCCCCee------
Confidence 89999994 45899999999999999997764443 33332 2244 68999999998
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe---cCCeEEEEeCCCCCcee
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA---DDLRINLWNLEISNQSF 268 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~---~d~~i~iwd~~~~~~~~ 268 (408)
++|+.|+.+.+|| . ....+...+ ..|...|..++|+|- ..+||+| .|++|++||..++ ..+
T Consensus 317 ------ASGgnDN~~~Iwd-~------~~~~p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i 381 (484)
T KOG0305|consen 317 ------ASGGNDNVVFIWD-G------LSPEPKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARI 381 (484)
T ss_pred ------ccCCCccceEecc-C------CCccccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEe
Confidence 9999999999999 3 222334443 899999999999996 4788886 6999999999944 444
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEE-e-CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-S-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
.. ..-...|++|.|++.. +-|+++ + .+..|.||++.+.+.. ..+.+| ...|..
T Consensus 382 ~~--------vdtgsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~~----~~l~gH------------~~RVl~ 436 (484)
T KOG0305|consen 382 DS--------VDTGSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKLV----AELLGH------------TSRVLY 436 (484)
T ss_pred cc--------cccCCceeeEEEcCCC-CEEEEecCCCCCcEEEEecccccee----eeecCC------------cceeEE
Confidence 32 2236789999999998 444444 3 3678999999886554 555555 688999
Q ss_pred EEEccCCCEEEEe-CCCeEEEEECCC
Q 015363 347 IKFARNGRHILSR-DYMTLKLWDINM 371 (408)
Q Consensus 347 ~~~spdg~~l~s~-~d~~v~~wd~~~ 371 (408)
++++|||..+++| .|.++++|++-.
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccccC
Confidence 9999999999998 589999999965
No 69
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-27 Score=182.06 Aligned_cols=266 Identities=17% Similarity=0.272 Sum_probs=200.0
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
+.+|.+.|..+...-.|++|||++.|++|+|+....+. +..++.++.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~--------------------~s~ll~~L~Gh~---------- 56 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG--------------------QSKLLAELTGHS---------- 56 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC--------------------CceeeeEecCCC----------
Confidence 35799999999998889999999999999999987664 234678899999
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
++|..++|.-..-|.+||+++.||.|.||.-.+++..+......+ .+++. +++|.|.+--+
T Consensus 57 --GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h------~~SVN-------sV~wapheygl---- 117 (299)
T KOG1332|consen 57 --GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH------SASVN-------SVAWAPHEYGL---- 117 (299)
T ss_pred --CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh------cccce-------eecccccccce----
Confidence 889999997434588999999999999999998876655444333 22333 67887765432
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC---C-----------CEEEEe-cCCe
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---G-----------ETFISA-DDLR 255 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~-----------~~l~~~-~d~~ 255 (408)
.+++++.||.|.+.+ ...... .....+..+|...|++++|.|. | ..|++| .|..
T Consensus 118 ------~LacasSDG~vsvl~-~~~~g~----w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~ 186 (299)
T KOG1332|consen 118 ------LLACASSDGKVSVLT-YDSSGG----WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL 186 (299)
T ss_pred ------EEEEeeCCCcEEEEE-EcCCCC----ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc
Confidence 248999999999987 444311 1122224789999999999986 4 568998 8999
Q ss_pred EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC---CceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH---CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (408)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (408)
|+||+.....-... .++.+|.+.|+.++|.|.- ...||+++.||++.||-.+..... -..+.++..
T Consensus 187 VkiW~~~~~~w~~e------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~-wk~tll~~f---- 255 (299)
T KOG1332|consen 187 VKIWKFDSDSWKLE------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP-WKKTLLEEF---- 255 (299)
T ss_pred eeeeecCCcchhhh------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc-ccccccccC----
Confidence 99999985422222 2378999999999999974 357999999999999987632110 000111111
Q ss_pred CccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCc
Q 015363 333 TRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGP 375 (408)
Q Consensus 333 ~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~ 375 (408)
...+..+.||+.|+.|+.+ +|+.|.+|.-+.+|+-
T Consensus 256 --------~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 256 --------PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred --------CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 3579999999999999987 5799999987765543
No 70
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.8e-27 Score=201.56 Aligned_cols=249 Identities=17% Similarity=0.260 Sum_probs=201.3
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-.-+|.+..|-+..+++++|+.|..|+||+..+.+. +..|.+|. +
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-----------------------V~~FeAH~------------D 98 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-----------------------VKTFEAHS------------D 98 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEeccccee-----------------------eEEeeccc------------c
Confidence 456889999999999999999999999999998764 57899999 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
.|.+++.+|..+ ++++++.|-+|++||.+.+ .+.+++++|.+- |. .++|.|.....
T Consensus 99 yIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy--------VM-------qv~fnPkD~nt------ 155 (794)
T KOG0276|consen 99 YIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHY--------VM-------QVAFNPKDPNT------ 155 (794)
T ss_pred ceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceE--------EE-------EEEecCCCccc------
Confidence 899999998855 9999999999999999864 567777777653 33 68898876543
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe-cCCeEEEEeCCCCCceee
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+++++-|++|++|. +-. ..+..++ .+|...|+++.+-+.| .+|++| +|.+|+|||.. .+.|++
T Consensus 156 -----FaS~sLDrTVKVWs-lgs------~~~nfTl-~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ-tk~CV~ 221 (794)
T KOG0276|consen 156 -----FASASLDRTVKVWS-LGS------PHPNFTL-EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ-TKSCVQ 221 (794)
T ss_pred -----eeeeeccccEEEEE-cCC------CCCceee-eccccCcceEEeccCCCcceEEecCCCceEEEeecc-hHHHHH
Confidence 48999999999999 433 3444554 8999999999998755 799999 99999999999 666775
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
+ +.+|...|..+.|+|.- .++++|+.||+++||+..+-+.. +++.-. ...|++++-
T Consensus 222 T-------LeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE----~tLn~g------------leRvW~I~~ 277 (794)
T KOG0276|consen 222 T-------LEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLE----KTLNYG------------LERVWCIAA 277 (794)
T ss_pred H-------hhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehh----hhhhcC------------CceEEEEee
Confidence 4 89999999999999999 89999999999999998887543 333222 368999999
Q ss_pred ccCCCEEEEeCCCeEEEEECCCCCCceeee
Q 015363 350 ARNGRHILSRDYMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 350 spdg~~l~s~~d~~v~~wd~~~~~~~~~~~ 379 (408)
.+.+..++.|.|....+..+.. ..|.-.+
T Consensus 278 ~k~~~~i~vG~Deg~i~v~lgr-eeP~vsM 306 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVTVKLGR-EEPAVSM 306 (794)
T ss_pred cCCCCeEEEeccCCcEEEEccC-CCCceee
Confidence 9988889999774444455544 3444443
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-25 Score=170.99 Aligned_cols=252 Identities=15% Similarity=0.201 Sum_probs=184.0
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
.|.+.|.|.+|+|+|++||+|+.|.+|++..++...+. ..+|.-+|.+ +.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~-------------------------~~g~dle~nm-----hd 136 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN-------------------------ATGHDLEFNM-----HD 136 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEeccccccc-------------------------ccCcceeeee-----cC
Confidence 58999999999999999999999999999877655431 2333322221 22
Q ss_pred cceeEEEEeecC--CCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSA--NSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~--~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|.+++|..++ .+.+|++++ .|..|++-|..+++....+..+.. .+. ..++-+|-.+
T Consensus 137 gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg--------hil--------alyswn~~m~--- 197 (350)
T KOG0641|consen 137 GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG--------HIL--------ALYSWNGAMF--- 197 (350)
T ss_pred CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc--------cEE--------EEEEecCcEE---
Confidence 779999998543 355666654 677888888888887777766643 232 2334445554
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeec------cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA------HAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (408)
++|+.|.+|++|| ++-. .++..+- .-....|.++++.|.|++|++| .|....+||++
T Consensus 198 ---------~sgsqdktirfwd-lrv~------~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 198 ---------ASGSQDKTIRFWD-LRVN------SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred ---------EccCCCceEEEEe-eecc------ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 9999999999999 4331 1222110 1113579999999999999999 99999999999
Q ss_pred CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (408)
++..++. +..|...|+++.|+|.. .++++++.|..|++-|+...-. +.+ +..+..+|..
T Consensus 262 -g~r~iq~-------f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla-----~el-------~~~vv~ehkd 320 (350)
T KOG0641|consen 262 -GGRMIQR-------FHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLA-----HEL-------PIMVVAEHKD 320 (350)
T ss_pred -CCceeee-------eCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchh-----hcC-------ceEEEEeccC
Confidence 5655543 67799999999999999 9999999999999999875321 111 1223455668
Q ss_pred eeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363 343 SISDIKFARNGRHILSR-DYMTLKLWDIN 370 (408)
Q Consensus 343 ~i~~~~~spdg~~l~s~-~d~~v~~wd~~ 370 (408)
.+..+.|+|..--+++. .|.++.+|-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 88899999977656655 58999999774
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=193.64 Aligned_cols=242 Identities=14% Similarity=0.222 Sum_probs=193.4
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-.+.|.++.|..||++||.|...|.|+|+|.++.. .+..+++|+ .
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-----------------------iLR~~~ah~------------a 111 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-----------------------ILRQLYAHQ------------A 111 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-----------------------HHHHHhhcc------------C
Confidence 46789999999999999999999999999965422 345788998 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
+|..+.|+|. ++..|++|+.|+.+++||+.+......+..+.+ .|. +.+++|....+
T Consensus 112 pv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--------YVR-------~g~~~~~~~hi------- 168 (487)
T KOG0310|consen 112 PVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--------YVR-------CGDISPANDHI------- 168 (487)
T ss_pred ceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--------eeE-------eeccccCCCeE-------
Confidence 8999999985 457899999999999999999886434444432 244 56777765543
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeec
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 273 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~ 273 (408)
+++|+.||.|++|| .+... .... .-.|..+|..+.+-|.|..+|++....|++||+-++++.+..
T Consensus 169 ----vvtGsYDg~vrl~D-tR~~~-----~~v~--elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~--- 233 (487)
T KOG0310|consen 169 ----VVTGSYDGKVRLWD-TRSLT-----SRVV--ELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS--- 233 (487)
T ss_pred ----EEecCCCceEEEEE-eccCC-----ceeE--EecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh---
Confidence 59999999999999 43321 1222 257889999999999999999998899999999977766543
Q ss_pred CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (408)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg 353 (408)
+..|...|+|+++..++ ..|++|+-|+.+++||+.+.+.+ ..+.-. ++|.+++.+|++
T Consensus 234 ----~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kvv----~s~~~~-------------~pvLsiavs~dd 291 (487)
T KOG0310|consen 234 ----MFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKVV----HSWKYP-------------GPVLSIAVSPDD 291 (487)
T ss_pred ----hhcccceEEEEEeecCC-ceEeecccccceEEEEccceEEE----Eeeecc-------------cceeeEEecCCC
Confidence 45599999999999999 99999999999999998776554 444443 789999999999
Q ss_pred CEEEEe-CCCeEEEEECC
Q 015363 354 RHILSR-DYMTLKLWDIN 370 (408)
Q Consensus 354 ~~l~s~-~d~~v~~wd~~ 370 (408)
+.++.| ++|.+.+=+..
T Consensus 292 ~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 292 QTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ceEEEecccceeeeehhh
Confidence 999999 67887776444
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.3e-26 Score=188.55 Aligned_cols=278 Identities=17% Similarity=0.276 Sum_probs=208.8
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
...|.++...|....++||+.|..+.++|...++ .+..|.||. ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------kk 263 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------KK 263 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------eE
Confidence 4568899999887889999999999999987665 467899999 77
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
|+.+.++|. ...+++++.|..|++|.............+.. .|. .+..+|+|.++
T Consensus 264 i~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~--------~V~-------~ls~h~tgeYl-------- 318 (506)
T KOG0289|consen 264 ITSVKFHKD--LDTVITASADEIIRVWSVPLSSEPTSSRPHEE--------PVT-------GLSLHPTGEYL-------- 318 (506)
T ss_pred EEEEEeccc--hhheeecCCcceEEeeccccccCccccccccc--------cce-------eeeeccCCcEE--------
Confidence 999999866 55899999999999999876654444433322 233 57888999988
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceee-ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
++++.|+...+.| +.... +.... .....-.+++.+|+|||.+|.+| .|+.|++||+......-
T Consensus 319 ----lsAs~d~~w~Fsd-~~~g~------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---- 383 (506)
T KOG0289|consen 319 ----LSASNDGTWAFSD-ISSGS------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---- 383 (506)
T ss_pred ----EEecCCceEEEEE-ccCCc------EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc----
Confidence 9999999998888 43321 11111 01223458999999999999999 99999999999554332
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
.+.+|.++|..++|+.+| .+||+++.|+.|++||+|..+.. +++...+ ...+.++.|.+.
T Consensus 384 ----~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~----kt~~l~~-----------~~~v~s~~fD~S 443 (506)
T KOG0289|consen 384 ----KFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF----KTIQLDE-----------KKEVNSLSFDQS 443 (506)
T ss_pred ----cCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc----ceeeccc-----------cccceeEEEcCC
Confidence 388999999999999999 99999999999999999987543 5555443 136999999999
Q ss_pred CCEEEEeC-CCeEEEEECCC-CCCceeeeeecccccceEEecCCCeee---eeeceeeec
Q 015363 353 GRHILSRD-YMTLKLWDINM-DSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIHTLY 407 (408)
Q Consensus 353 g~~l~s~~-d~~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~ 407 (408)
|.+|+.++ +=.|++++-.+ .-.++..+..|.+....+..-.....+ ++|++-+||
T Consensus 444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 444 GTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred CCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 99999884 45555555322 135667777777666666644444443 457766665
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=174.98 Aligned_cols=218 Identities=17% Similarity=0.331 Sum_probs=176.0
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
++|..+.|+ -+|++.++++.|++|++|+...+.+++....+.++ +. ..+.+.|...+
T Consensus 18 gaV~avryN--~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--------Vl-------D~~~s~Dnskf------ 74 (307)
T KOG0316|consen 18 GAVRAVRYN--VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--------VL-------DAALSSDNSKF------ 74 (307)
T ss_pred cceEEEEEc--cCCCEEEEcCCCceEEeecccccceeeeecCCCce--------ee-------ecccccccccc------
Confidence 889999995 56899999999999999999999999998888765 22 34444455444
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC-ceeeE
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNI 270 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~ 270 (408)
++++.|+.+.+|| +.. ++..+.+ .+|...|+.++|+.+...+++| .|.++++||.+... +++++
T Consensus 75 ------~s~GgDk~v~vwD-V~T------Gkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 75 ------ASCGGDKAVQVWD-VNT------GKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ------ccCCCCceEEEEE-ccc------Ceeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence 9999999999999 533 4455554 8999999999999999999999 89999999998432 23443
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
+......|.++..+ + ..+++|+.||+++.||+|.|... ..+-+ .+|++++|+
T Consensus 141 -------ldea~D~V~Si~v~--~-heIvaGS~DGtvRtydiR~G~l~----sDy~g--------------~pit~vs~s 192 (307)
T KOG0316|consen 141 -------LDEAKDGVSSIDVA--E-HEIVAGSVDGTVRTYDIRKGTLS----SDYFG--------------HPITSVSFS 192 (307)
T ss_pred -------hhhhcCceeEEEec--c-cEEEeeccCCcEEEEEeecceee----hhhcC--------------CcceeEEec
Confidence 55667788888886 4 56999999999999999999654 33333 479999999
Q ss_pred cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEe-cCCCe
Q 015363 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMH-SSKNY 396 (408)
Q Consensus 351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 396 (408)
+|++.+++++ |+++++-|-.+ |++++.+.+|.....++.+ +.+.+
T Consensus 193 ~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CCCCEEEEeeccceeeecccch-hHHHHHhcccccceeeeeeeecccc
Confidence 9999988886 79999999998 8999999999987655543 44433
No 75
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.1e-25 Score=200.50 Aligned_cols=255 Identities=14% Similarity=0.170 Sum_probs=178.3
Q ss_pred cceeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
...+|.+.|++++|+| ++++||+|+.|++|+|||+.+..... .....+..+.+|.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~----------------~~~~~l~~L~gH~-------- 125 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ----------------NISDPIVHLQGHT-------- 125 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc----------------ccCcceEEecCCC--------
Confidence 4568999999999999 88999999999999999987653210 0112345678888
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..|.+++|+|.. +.+|++++.|++|++||+.+++....+..+. ..+. ++.|+|+|..+
T Consensus 126 ----~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~--------~~V~-------sla~spdG~lL-- 183 (493)
T PTZ00421 126 ----KKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHS--------DQIT-------SLEWNLDGSLL-- 183 (493)
T ss_pred ----CcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCC--------CceE-------EEEEECCCCEE--
Confidence 779999998753 2589999999999999999988766665442 2344 78999999987
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccc-eEEEEeCCCCCEEEEe-----cCCeEEEEeCC
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFISA-----DDLRINLWNLE 262 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~-----~d~~i~iwd~~ 262 (408)
++++.|+.|++|| +... .....+ .+|... +..+.|.+++..++++ .|+.|++||++
T Consensus 184 ----------atgs~Dg~IrIwD-~rsg------~~v~tl-~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 184 ----------CTTSKDKKLNIID-PRDG------TIVSSV-EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred ----------EEecCCCEEEEEE-CCCC------cEEEEE-ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 9999999999999 5432 222332 556543 4467788887777653 37999999998
Q ss_pred CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (408)
.....+.... ..+...+....|++++ .+|++++ .|+.|++||+..++.. ...... +.
T Consensus 246 ~~~~p~~~~~------~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~----~~~~~~-----------s~ 303 (493)
T PTZ00421 246 KMASPYSTVD------LDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLT----FCSSYS-----------SV 303 (493)
T ss_pred CCCCceeEec------cCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceE----EEeecc-----------CC
Confidence 6555544321 1123446667899999 7777776 5999999999988643 222211 12
Q ss_pred ceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363 342 ASISDIKFARNGRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 342 ~~i~~~~~spdg~~l~s~~d~~v~~wd~~~ 371 (408)
.++..++|.|.-. +-+..--..+++.+..
T Consensus 304 ~~~~g~~~~pk~~-~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 304 EPHKGLCMMPKWS-LDTRKCEIARFYALTY 332 (493)
T ss_pred CCCcceEeccccc-ccccceeeeEEEEecC
Confidence 4577788888421 1111112446666653
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.3e-25 Score=175.03 Aligned_cols=279 Identities=16% Similarity=0.215 Sum_probs=199.0
Q ss_pred eeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCC-CCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDT-RDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 33 ~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
...+.|.+|+||| ...+++.||.||+||+|+++.. ... -.....|.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------~ka~~~~~---------- 72 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------PKAQQSHD---------- 72 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCccc----------------------chhhhccC----------
Confidence 3568899999999 4667789999999999999864 211 02344555
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC--eeec
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG--CGER 188 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~l~~ 188 (408)
++|.+++|+ .+|+.+++|+.|+.+++||+.+++..++... ++.+. .+.|.+... +|
T Consensus 73 --~PvL~v~Ws--ddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H---------d~pvk-------t~~wv~~~~~~cl-- 130 (347)
T KOG0647|consen 73 --GPVLDVCWS--DDGSKVFSGGCDKQAKLWDLASGQVSQVAAH---------DAPVK-------TCHWVPGMNYQCL-- 130 (347)
T ss_pred --CCeEEEEEc--cCCceEEeeccCCceEEEEccCCCeeeeeec---------cccee-------EEEEecCCCccee--
Confidence 889999996 5589999999999999999999987665443 23344 455555443 55
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
++|+.|++|+.|| .+... ++..+ .-...++++.. -..+++.+ .++.|.+|+++.+...
T Consensus 131 ----------~TGSWDKTlKfWD-~R~~~------pv~t~--~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 131 ----------VTGSWDKTLKFWD-TRSSN------PVATL--QLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred ----------Eecccccceeecc-cCCCC------eeeee--eccceeeehhc--cCceeEEEecCCcEEEEEcCCCcch
Confidence 9999999999999 44321 11111 11234444433 34677778 8999999999855544
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
++.+ .....-.+++++..++. ...|.|+-+|++.|-.+..+... .-.+|+.|...+. ..+-.-.|+++
T Consensus 190 ~k~~------~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~---~~~~VYaVNsi 257 (347)
T KOG0647|consen 190 FKRI------ESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNS---VNDDVYAVNSI 257 (347)
T ss_pred hhhh------cCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCcc--CceeEEEeccCCC---CCCceEEecce
Confidence 4332 12235568899999998 77799999999999998875321 1156666753221 01112468999
Q ss_pred EEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee
Q 015363 348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG 399 (408)
Q Consensus 348 ~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (408)
+|+|.-..|+++ +||++.+||-+. ...+++.+.|.....+...-..+.+++
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred EeecccceEEEecCCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEE
Confidence 999977777765 799999999987 688999999999888888777777653
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=9.7e-26 Score=204.04 Aligned_cols=260 Identities=17% Similarity=0.289 Sum_probs=204.0
Q ss_pred cceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeee
Q 015363 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (408)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 95 (408)
.|+..+.+- ......+|.+.|+++++..-+.+|++|+.|.++++||..++.+ ...
T Consensus 232 ~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----------------------~~~ 286 (537)
T KOG0274|consen 232 LWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----------------------THS 286 (537)
T ss_pred EeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----------------------EEE
Confidence 566666433 2223678999999999988788999999999999999988874 578
Q ss_pred eccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCce
Q 015363 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (408)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (408)
+.+|. +.|.++... ...+++|+.|.+|++|++.++.++.++..+.. .|.
T Consensus 287 l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~--------~V~------- 335 (537)
T KOG0274|consen 287 LQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG--------PVN------- 335 (537)
T ss_pred ecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEeccccc--------cEE-------
Confidence 89999 779999884 23788889999999999999999998886433 343
Q ss_pred eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (408)
++... +..+ ++|+.|+.|++|+ +. ..+|++.+ .+|..+|.++.+.+. ..+++| .|+
T Consensus 336 ~v~~~--~~~l------------vsgs~d~~v~VW~-~~------~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 336 CVQLD--EPLL------------VSGSYDGTVKVWD-PR------TGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EEEec--CCEE------------EEEecCceEEEEE-hh------hceeeeee-cCCcceEEEEEecCc-ceEEeeeecc
Confidence 33333 5555 9999999999999 43 57777876 889999999988766 788888 899
Q ss_pred eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (408)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (408)
+|++||+++..+++.. +.+|..-+..+.+ .+ ++|++++.|++|++||..+++.. ++++++
T Consensus 393 ~IkvWdl~~~~~c~~t-------l~~h~~~v~~l~~--~~-~~Lvs~~aD~~Ik~WD~~~~~~~----~~~~~~------ 452 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHT-------LQGHTSLVSSLLL--RD-NFLVSSSADGTIKLWDAEEGECL----RTLEGR------ 452 (537)
T ss_pred ceEeecCCchhhhhhh-------hcCCccccccccc--cc-ceeEeccccccEEEeecccCcee----eeeccC------
Confidence 9999999955355543 7888888866655 45 78999999999999999998765 566552
Q ss_pred cccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeee
Q 015363 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 335 ~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
|.+.|..+++. +...|.++.|+++++||+++ +++.+.+-.
T Consensus 453 -----~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~-~~~~~~l~~ 492 (537)
T KOG0274|consen 453 -----HVGGVSALALG-KEEILCSSDDGSVKLWDLRS-GTLIRTLLS 492 (537)
T ss_pred -----CcccEEEeecC-cceEEEEecCCeeEEEeccc-Cchhhhhhh
Confidence 14678888876 34455555789999999998 687776633
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=9.9e-26 Score=198.99 Aligned_cols=246 Identities=14% Similarity=0.239 Sum_probs=197.2
Q ss_pred cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (408)
+-+.|..|-|.++++++|...|.+.+||+..... +-..++|. +.|
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l-----------------------~Eti~AHd------------gaI 457 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASL-----------------------VETIRAHD------------GAI 457 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhh-----------------------hhhhhccc------------cce
Confidence 3678999999999999999999999999886653 34567888 779
Q ss_pred eEEEEeecCCCcEEEEEeCCCeEEEEEcCC-----CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
.+++.+|+ +..+++|+.|.+|++||..- +...+++..+.. .+....+...++.++|||+++
T Consensus 458 Wsi~~~pD--~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~--------rtLel~ddvL~v~~Spdgk~L---- 523 (888)
T KOG0306|consen 458 WSISLSPD--NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT--------RTLELEDDVLCVSVSPDGKLL---- 523 (888)
T ss_pred eeeeecCC--CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc--------eEEeccccEEEEEEcCCCcEE----
Confidence 99999765 77899999999999999752 222222222221 122223334489999999998
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+.+--|.++++|- +....- .-. +-+|.-+|.|+..+||++.+++| .|..|++|-++ .+.|.+
T Consensus 524 --------aVsLLdnTVkVyf-lDtlKF------fls-LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHK 586 (888)
T KOG0306|consen 524 --------AVSLLDNTVKVYF-LDTLKF------FLS-LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHK 586 (888)
T ss_pred --------EEEeccCeEEEEE-ecceee------eee-ecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhh
Confidence 8899999999987 433221 112 47999999999999999999999 89999999998 555654
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
. +-+|...|+++.|-|.. ..|.+++.|+.|+-||-.....+ ..+.+| ...|++++.
T Consensus 587 S-------~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~i----q~L~~H------------~~ev~cLav 642 (888)
T KOG0306|consen 587 S-------FFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEI----QKLDGH------------HSEVWCLAV 642 (888)
T ss_pred h-------hhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhh----eeeccc------------hheeeeeEE
Confidence 3 67899999999999988 99999999999999998877544 666666 588999999
Q ss_pred ccCCCEEEEeC-CCeEEEEECCC
Q 015363 350 ARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 350 spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
+|+|.++++++ |.+|++|....
T Consensus 643 ~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 643 SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCCCCeEEeccCCceeEeeeccC
Confidence 99999999996 79999998864
No 79
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1e-24 Score=172.50 Aligned_cols=305 Identities=14% Similarity=0.215 Sum_probs=206.1
Q ss_pred eeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
..|.+.|+++.+.+. |+++++|+.||.|.+||++..... +..++... +-...-...-.+|.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-------e~s~li~k-~~c~v~~~h~~~Hk---------- 101 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-------EASGLIAK-HKCIVAKQHENGHK---------- 101 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccch-------hhccceeh-eeeeccccCCccce----------
Confidence 469999999999985 999999999999999999865410 00000000 00000001123344
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC--CCeeec
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN--GGCGER 188 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~~ 188 (408)
-.|.++.|.|-.+| .|.+++.|.++++||+.+-+....++.+ +.|+ +-+++|- ..+|
T Consensus 102 --y~iss~~WyP~DtG-mFtssSFDhtlKVWDtnTlQ~a~~F~me---------~~VY-------shamSp~a~sHcL-- 160 (397)
T KOG4283|consen 102 --YAISSAIWYPIDTG-MFTSSSFDHTLKVWDTNTLQEAVDFKME---------GKVY-------SHAMSPMAMSHCL-- 160 (397)
T ss_pred --eeeeeeEEeeecCc-eeecccccceEEEeecccceeeEEeecC---------ceee-------hhhcChhhhcceE--
Confidence 67999999997666 8999999999999999998877777663 3344 2344442 2343
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEE-EEe-cCCeEEEEeCCCCCc
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~ 266 (408)
+++|..+-.|++.| +. .+.+...+ .+|...|.++.|+|...++ ++| .||.|++||++.-..
T Consensus 161 ---------iA~gtr~~~VrLCD-i~------SGs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg 223 (397)
T KOG4283|consen 161 ---------IAAGTRDVQVRLCD-IA------SGSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG 223 (397)
T ss_pred ---------EEEecCCCcEEEEe-cc------CCcceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc
Confidence 47888999999999 43 34555554 9999999999999998765 456 899999999996545
Q ss_pred eeeEeecCC-------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363 267 SFNIVDVKP-------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (408)
Q Consensus 267 ~~~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (408)
++..++... .+-..|.+.|..++|..++ .++++++.|.++++|+..+|....++..........
T Consensus 224 cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-------- 294 (397)
T KOG4283|consen 224 CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-------- 294 (397)
T ss_pred eeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccc--------
Confidence 665554322 1235688999999999999 999999999999999999886443222211111100
Q ss_pred ccceeEEEEEccCCC-EEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCe---eeeeeceeeec
Q 015363 340 IIASISDIKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY---FMGLDNIHTLY 407 (408)
Q Consensus 340 h~~~i~~~~~spdg~-~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~ 407 (408)
| -.+. +. +-+.. ++..-.++.+.++++-. +..++.+..| .+...|.+|.++ +.++|...++|
T Consensus 295 ~-~~~~-~~-~~~s~vfv~~p~~~~lall~~~s-gs~ir~l~~h--~k~i~c~~~~~~fq~~~tg~~d~ni~ 360 (397)
T KOG4283|consen 295 S-FAVH-IQ-SMDSDVFVLFPNDGSLALLNLLE-GSFVRRLSTH--LKRINCAAYRPDFEQCFTGDMNGNIY 360 (397)
T ss_pred c-ceEE-Ee-ecccceEEEEecCCeEEEEEccC-ceEEEeeecc--cceeeEEeecCchhhhhccccCCccc
Confidence 0 0111 22 22222 22222457888888876 7888888888 566666666665 45666655554
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4e-25 Score=200.05 Aligned_cols=252 Identities=13% Similarity=0.203 Sum_probs=199.3
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
|...|.+..|. +.++++++.+++|++|+..++.. ....+.+|. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------g 250 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------G 250 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------C
Confidence 56778999998 55799999999999999877653 334489999 7
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
.|.++++.. -+.++++|+.|.++++||..++++..++.++... ..+.......+
T Consensus 251 ~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st-----------------v~~~~~~~~~~------- 304 (537)
T KOG0274|consen 251 GVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS-----------------VRCLTIDPFLL------- 304 (537)
T ss_pred CceeEEEec--CCCEEEEEecCCcEEeEecCCCcEEEEecCCCce-----------------EEEEEccCceE-------
Confidence 799999953 3569999999999999999999999999877543 12333333333
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
++|+.|.+|++|+ +. .+.+.+.+ .+|..+|+++..+ +.++++| .|++|++||+. ..+++..
T Consensus 305 -----~sgs~D~tVkVW~-v~------n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~s-- 366 (537)
T KOG0274|consen 305 -----VSGSRDNTVKVWD-VT------NGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKS-- 366 (537)
T ss_pred -----eeccCCceEEEEe-cc------CcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeee--
Confidence 7789999999999 54 24555554 6699999999987 7889998 89999999999 5666654
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
+.+|...|.++.+.+. ..+++|+.|++|++||+++.. +++.++.+| .+-+..+.+ .
T Consensus 367 -----l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h------------~~~v~~l~~--~ 422 (537)
T KOG0274|consen 367 -----LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGH------------TSLVSSLLL--R 422 (537)
T ss_pred -----ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh---hhhhhhcCC------------ccccccccc--c
Confidence 7889999999999875 579999999999999999883 123666666 456655544 5
Q ss_pred CCEEEEeC-CCeEEEEECCCCCCceeeeeec-ccccceEE
Q 015363 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKVM 390 (408)
Q Consensus 353 g~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~ 390 (408)
+++|++++ |++|++||..+ +++++++.++ ......+.
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGVSALA 461 (537)
T ss_pred cceeEeccccccEEEeeccc-CceeeeeccCCcccEEEee
Confidence 78999985 89999999997 8999999994 34444443
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=8.8e-27 Score=179.82 Aligned_cols=245 Identities=13% Similarity=0.208 Sum_probs=189.2
Q ss_pred ccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 29 ~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
+.+.+|.+.|+...++.+...-|+++.|-+-+|||.-++.. +.+
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde------------------------------------lhs 96 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE------------------------------------LHS 96 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh------------------------------------hhh
Confidence 35668999999999999988899999999999999776653 333
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
++|+.-|..++|+ .|.++|++|+.+..+||+|++..+.... +... ..+.|. .+.|....+++
T Consensus 97 f~hkhivk~~af~--~ds~~lltgg~ekllrvfdln~p~App~-E~~g------htg~Ir-------~v~wc~eD~~i-- 158 (334)
T KOG0278|consen 97 FEHKHIVKAVAFS--QDSNYLLTGGQEKLLRVFDLNRPKAPPK-EISG------HTGGIR-------TVLWCHEDKCI-- 158 (334)
T ss_pred hhhhheeeeEEec--ccchhhhccchHHHhhhhhccCCCCCch-hhcC------CCCcce-------eEEEeccCceE--
Confidence 4444669999996 4577999999999999999987653221 1111 133444 56777777887
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCcee
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 268 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~ 268 (408)
++...|++|++|| .+... ..+.+ ....+|+++.++++|++|.++..+.|.+||..+.+ .+
T Consensus 159 ----------LSSadd~tVRLWD-~rTgt------~v~sL--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~-~l 218 (334)
T KOG0278|consen 159 ----------LSSADDKTVRLWD-HRTGT------EVQSL--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG-LL 218 (334)
T ss_pred ----------EeeccCCceEEEE-eccCc------EEEEE--ecCCCCcceeeccCCCEEEEecCceeEEecccccc-ce
Confidence 8889999999999 54322 22222 23467999999999999999988999999998544 33
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
+.++ -...|.+.+.+|+. ..+++|+.|..++.||..++..+ ..+ ..+|.++|.++.
T Consensus 219 Ks~k--------~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi----~~~-----------nkgh~gpVhcVr 274 (334)
T KOG0278|consen 219 KSYK--------MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEI----GSY-----------NKGHFGPVHCVR 274 (334)
T ss_pred eecc--------CccccccccccCCC-ceEEecCcceEEEEEeccCCcee----eec-----------ccCCCCceEEEE
Confidence 3221 24457889999999 99999999999999999999764 222 144568999999
Q ss_pred EccCCCEEEEeC-CCeEEEEECCC
Q 015363 349 FARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 349 ~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
|+|||..-++|+ ||+|+||.+..
T Consensus 275 FSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 275 FSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ECCCCceeeccCCCceEEEEEecC
Confidence 999999999997 79999999975
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.6e-25 Score=174.66 Aligned_cols=254 Identities=18% Similarity=0.277 Sum_probs=189.1
Q ss_pred CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (408)
....|.+.+.| ....|.++|+|++. ++.++|+|+.|-+|+|||+.....
T Consensus 27 ~s~~~~l~~lF------~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q----------------------- 75 (362)
T KOG0294|consen 27 DSVKPTLKPLF------AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ----------------------- 75 (362)
T ss_pred cccceeeeccc------cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-----------------------
Confidence 34456666654 34579999999998 589999999999999999876653
Q ss_pred eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (408)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (408)
+..+..|. +.|+++.|.+....+.|++|+.||.|.+|+...-++...++.+.. .|.
T Consensus 76 lg~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--------~Vt---- 131 (362)
T KOG0294|consen 76 LGILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--------QVT---- 131 (362)
T ss_pred hcceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc--------ccc----
Confidence 34566777 779999997653334899999999999999998888877777643 233
Q ss_pred CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEec
Q 015363 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD 252 (408)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 252 (408)
.++.+|.++.. ++.+.|+.+++|+++++ ....... -. ...+.+.|+|.|.+|+.+.
T Consensus 132 ---~lsiHPS~KLA------------LsVg~D~~lr~WNLV~G-r~a~v~~------L~--~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 132 ---DLSIHPSGKLA------------LSVGGDQVLRTWNLVRG-RVAFVLN------LK--NKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred ---eeEecCCCceE------------EEEcCCceeeeehhhcC-ccceeec------cC--CcceeeEEcCCCCEEEEEe
Confidence 68999999987 99999999999994433 2211110 11 2234489999999999886
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (408)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (408)
...|-+|.++. ...+.. +. ....+.++.|-.. ..|++|..|+.|.+||..... +...+.+|
T Consensus 188 ~~~i~i~q~d~-A~v~~~-------i~-~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~----~~~~~~AH---- 248 (362)
T KOG0294|consen 188 RNKIDIYQLDN-ASVFRE-------IE-NPKRILCATFLDG--SELLVGGDNEWISLKDTDSDT----PLTEFLAH---- 248 (362)
T ss_pred ccEEEEEeccc-HhHhhh-------hh-ccccceeeeecCC--ceEEEecCCceEEEeccCCCc----cceeeecc----
Confidence 67799999984 333322 11 1244667777654 589999999999999998753 23555566
Q ss_pred CccccccccceeEEEEEc--cCCCEEEEe-CCCeEEEEECCCC
Q 015363 333 TRSFFTEIIASISDIKFA--RNGRHILSR-DYMTLKLWDINMD 372 (408)
Q Consensus 333 ~~~~~~~h~~~i~~~~~s--pdg~~l~s~-~d~~v~~wd~~~~ 372 (408)
..+|.++.+- |++.+|+++ +||.|++||++..
T Consensus 249 --------~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 249 --------ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --------hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 5789998853 568899998 5899999999873
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.7e-25 Score=183.39 Aligned_cols=293 Identities=11% Similarity=0.116 Sum_probs=208.3
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee-ccCCcccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLE 110 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~~ 110 (408)
..|.-+|.|++++|++++.++++.+|+|.=|++.++... +-.++.. ... ...+.....- .+|.
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~---~~i~~~~-ev~--k~~~~~~k~~r~~h~---------- 202 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKD---RYIIERD-EVL--KSHGNPLKESRKGHV---------- 202 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCccc---ccccccc-hhh--hhccCCCCccccccc----------
Confidence 468999999999999999999999999999999887632 0000100 000 0001111111 2555
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
..|.+++.+ +||++||+|+.|..|.||+.++.+.++.+..+.. .|. .++|-.....+
T Consensus 203 --keil~~avS--~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~--------~V~-------~L~fr~gt~~l---- 259 (479)
T KOG0299|consen 203 --KEILTLAVS--SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG--------AVS-------SLAFRKGTSEL---- 259 (479)
T ss_pred --ceeEEEEEc--CCCcEEEecCCCceEEEecCcccchhhccccccc--------cee-------eeeeecCccce----
Confidence 669999996 4599999999999999999999998888777643 344 56676666665
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
++++.|+.|++|+ +..... +.+ +.+|...|.+|....-++.+-+| .|+++++|++....+.+
T Consensus 260 --------ys~s~Drsvkvw~-~~~~s~------vet-lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli- 322 (479)
T KOG0299|consen 260 --------YSASADRSVKVWS-IDQLSY------VET-LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI- 322 (479)
T ss_pred --------eeeecCCceEEEe-hhHhHH------HHH-HhCCccceeeechhcccceEEeccccceeEEEeccccceee-
Confidence 9999999999999 543222 222 47999999999888888888788 99999999996444333
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc-cccCCCCccccccccceeEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-EQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
+.++.+.+-|++|-.+. .|++|+.+|.|.+|++.+.+.+ .+.. .|... +..-.-.+..+|++++
T Consensus 323 --------frg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~-~~~~~~~~~~Witsla 387 (479)
T KOG0299|consen 323 --------FRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVI-PELDPVNGNFWITSLA 387 (479)
T ss_pred --------eeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCce----eEeecccccc-CCccccccccceeeeE
Confidence 56788889999998774 8999999999999999887543 3222 12110 0000011225999999
Q ss_pred EccCCCEEEEeC-CCeEEEEECCCCC---CceeeeeecccccceEEecCCCe
Q 015363 349 FARNGRHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKVMHSSKNY 396 (408)
Q Consensus 349 ~spdg~~l~s~~-d~~v~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 396 (408)
..|...++++|+ +|.|++|.+..+- +++..+. -.+..+.++...++.
T Consensus 388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred ecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence 999999999997 7999999998742 3344444 344566666555555
No 84
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.6e-24 Score=196.83 Aligned_cols=238 Identities=13% Similarity=0.186 Sum_probs=164.9
Q ss_pred cceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
...+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+.... .. .....+..+.+|.
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~---~~------------~i~~p~~~L~gH~-------- 125 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES---VK------------EIKDPQCILKGHK-------- 125 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc---cc------------ccccceEEeecCC--------
Confidence 34579999999999997 789999999999999998754210 00 0011234567887
Q ss_pred cccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
..|.+++|+|. +. ++++++.|++|++||+++++....+..+ ..+. ++.|+|+|..+
T Consensus 126 ----~~V~sVaf~P~--g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~---------~~V~-------SlswspdG~lL- 182 (568)
T PTZ00420 126 ----KKISIIDWNPM--NYYIMCSSGFDSFVNIWDIENEKRAFQINMP---------KKLS-------SLKWNIKGNLL- 182 (568)
T ss_pred ----CcEEEEEECCC--CCeEEEEEeCCCeEEEEECCCCcEEEEEecC---------CcEE-------EEEECCCCCEE-
Confidence 77999999875 44 4578999999999999988765544321 1233 78999999987
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEE-----EEeCCCCCEEEEe-cC----CeEE
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS-----ISNNSDGETFISA-DD----LRIN 257 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----i~~~~~~~~l~~~-~d----~~i~ 257 (408)
++++.|+.|++|| +... .....+ .+|.+.+.. ..|++++.+++++ .| ++|+
T Consensus 183 -----------at~s~D~~IrIwD-~Rsg------~~i~tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 183 -----------SGTCVGKHMHIID-PRKQ------EIASSF-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred -----------EEEecCCEEEEEE-CCCC------cEEEEE-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 8888999999999 5432 222333 567654432 3456888888875 44 4799
Q ss_pred EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (408)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (408)
|||++....++..+. +..+.+.+...-..+++ .++++|+.|+.|++|++..+... .+..+.
T Consensus 244 LWDlr~~~~pl~~~~-----ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~~--~l~~~~----------- 304 (568)
T PTZ00420 244 LWDLKNTTSALVTMS-----IDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSIR--KVNEYK----------- 304 (568)
T ss_pred EEECCCCCCceEEEE-----ecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcEE--eecccc-----------
Confidence 999996555554432 33334444333344556 89999999999999999876421 112221
Q ss_pred ccccceeEEEEEccCC
Q 015363 338 TEIIASISDIKFARNG 353 (408)
Q Consensus 338 ~~h~~~i~~~~~spdg 353 (408)
+..++.+++|.|..
T Consensus 305 --s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 305 --SCSPFRSFGFLPKQ 318 (568)
T ss_pred --cCCCccceEEcccc
Confidence 23567889999953
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.9e-26 Score=188.94 Aligned_cols=276 Identities=14% Similarity=0.253 Sum_probs=203.4
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
...|.+.|..+.|-++...|++|+.|..|++|+...... .+..++.+..
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~---------- 219 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL---------- 219 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC----------
Confidence 446999999999999988899999999999999876642 2345566665
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
++|+++.| ++++..+++++.|+.+++|++...+...++.+|... +. ++.+......+
T Consensus 220 --g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk--------Vt-------~ak~~~~~~~v---- 276 (459)
T KOG0288|consen 220 --GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK--------VT-------AAKFKLSHSRV---- 276 (459)
T ss_pred --CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhhhcccccc--------ee-------eehhhccccce----
Confidence 77999999 566889999999999999999999888887776443 22 22333222223
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
++++.|.+|++|| +.. ..|.+..+.+ ..+..|..+ ...+++| .|++|++||.+.......
T Consensus 277 --------Vsgs~DRtiK~WD-l~k------~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 277 --------VSGSADRTIKLWD-LQK------AYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred --------eeccccchhhhhh-hhh------hheecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeE
Confidence 9999999999999 533 4455544322 345556555 5677888 899999999995544332
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
.+. .+.|+++..++++ ..+.+++.|.++.+.|+++...+ ..+.... +..+ +..+.+.|
T Consensus 338 --------v~~-gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA~g------~k~a--sDwtrvvf 395 (459)
T KOG0288|consen 338 --------VPL-GGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSAEG------FKCA--SDWTRVVF 395 (459)
T ss_pred --------eec-CcceeeEeeccCC-eEEeeecCCCceeeeecccccEE----EEeeccc------cccc--cccceeEE
Confidence 233 4489999999999 77788899999999999998664 3333321 1122 34889999
Q ss_pred ccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc---cceEEecCCCeeeeeec
Q 015363 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL---RPKVMHSSKNYFMGLDN 402 (408)
Q Consensus 350 spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~ 402 (408)
||++.|+++|+ ||.|+||++.+ +++.+.+...... ....+.+....+++.|+
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~t-gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFT-GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccC-ceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 99999999996 89999999998 7888877665443 34444455555666654
No 86
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-24 Score=171.84 Aligned_cols=293 Identities=14% Similarity=0.223 Sum_probs=198.3
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
...|.+-|+|+.|.+.|+.+|+|+.|++|+|||...... ++.+-...+.|.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------------~W~~Ts~Wrah~---------- 59 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------------TWSCTSSWRAHD---------- 59 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------------ceEEeeeEEecC----------
Confidence 457899999999999999999999999999999754432 455667788998
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-------cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (408)
+.|..|.|.+.+-|+.+|+++.|+++.||.-... +.......... .+.+. .+.|.|..
T Consensus 60 --~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds------rssV~-------DV~FaP~h 124 (361)
T KOG2445|consen 60 --GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS------RSSVT-------DVKFAPKH 124 (361)
T ss_pred --CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC------Cccee-------EEEecchh
Confidence 7799999987777999999999999999976321 12222211111 22333 78888864
Q ss_pred CeeecccccccCccccCCCCCceeeeceeeeccccccccccceee------ccccccceEEEEeCCC---CCEEEEecC-
Q 015363 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY------AHAHDYHINSISNNSD---GETFISADD- 253 (408)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~~~~~---~~~l~~~~d- 253 (408)
.-+. +++++.||.+++|+.....+.. .......+ ...+.....|+.|+|. ..+||.|.|
T Consensus 125 lGLk----------lA~~~aDG~lRIYEA~dp~nLs-~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e 193 (361)
T KOG2445|consen 125 LGLK----------LAAASADGILRIYEAPDPMNLS-QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE 193 (361)
T ss_pred cceE----------EEEeccCcEEEEEecCCccccc-cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc
Confidence 4331 3899999999999832222211 01111111 1245567789999986 378888843
Q ss_pred -----CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC---ceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363 254 -----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (408)
Q Consensus 254 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (408)
+.+.||...........+ .++.+|..+|+.++|.|+-. .+||+++.|| |+||.++........-...
T Consensus 194 ~a~~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~ 268 (361)
T KOG2445|consen 194 DAPHLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL 268 (361)
T ss_pred CCccccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhccc
Confidence 389999887665333322 35789999999999999742 5799999999 9999998532100000000
Q ss_pred ccccC----CCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCC--CCceeeeeecc
Q 015363 326 EEQEA----PGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMD--SGPVATFQVHE 383 (408)
Q Consensus 326 ~~~~~----~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~--~~~~~~~~~~~ 383 (408)
..... -.....+.+|.+.|..+.|.-.|..|++. +||+|++|...-. -++...++...
T Consensus 269 ~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 269 APDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccC
Confidence 00000 00123367788999999999999999986 5699999987642 34445554433
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.6e-26 Score=196.01 Aligned_cols=261 Identities=18% Similarity=0.254 Sum_probs=198.3
Q ss_pred ceeeccceE---EEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363 31 EVQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (408)
Q Consensus 31 ~~~h~~~V~---~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (408)
+.+|...|. ++..+. .+++|+||++||.|++|+....... |.-.+...++.|.
T Consensus 17 e~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------ 73 (735)
T KOG0308|consen 17 EKQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------ 73 (735)
T ss_pred hhhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH------
Confidence 346777777 666665 5778999999999999998655321 2233567788898
Q ss_pred cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc--EEEEeccCCCCcccCCCCCeEeecCCceeeEE-ccCC
Q 015363 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-MANG 183 (408)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 183 (408)
+.|+++..+ .+++.|++++.|-+|++|+...+. +..++..|.+ .|. ++++ .++.
T Consensus 74 ------DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D--------YVk-------cla~~ak~~ 130 (735)
T KOG0308|consen 74 ------DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD--------YVK-------CLAYIAKNN 130 (735)
T ss_pred ------hHHhhHHhh--cCCCceEEecCCceEEEeecccCcchhHhhhhcccc--------hhe-------eeeecccCc
Confidence 779999996 557789999999999999998763 3333333321 222 4555 3344
Q ss_pred CeeecccccccCccccCCCCCceeeeceeeecccc--ccc--cccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEE
Q 015363 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET--NLV--AGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINL 258 (408)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~i 258 (408)
.. +++|+-|+.|.+|| +..... ... ......+..++...|++++.++.|..+++| ..+.+++
T Consensus 131 ~l------------vaSgGLD~~IflWD-in~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 131 EL------------VASGGLDRKIFLWD-INTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred ee------------EEecCCCccEEEEE-ccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 44 49999999999999 653211 100 111112223788899999999999999998 8999999
Q ss_pred EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (408)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (408)
||.++..+.++ +.+|...|..+..++|| ..+++++.||+|++||+...+.+ .++..|.
T Consensus 198 wDprt~~kimk--------LrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl----~T~~vH~--------- 255 (735)
T KOG0308|consen 198 WDPRTCKKIMK--------LRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCL----ATYIVHK--------- 255 (735)
T ss_pred eccccccceee--------eeccccceEEEEEcCCC-CeEeecCCCceEEeeecccccee----eeEEecc---------
Confidence 99997776665 57999999999999999 99999999999999999987443 6677774
Q ss_pred cccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCc
Q 015363 339 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP 375 (408)
Q Consensus 339 ~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~ 375 (408)
..|+++.-+|+-..+++|+ |+.|..=|+++..+.
T Consensus 256 ---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~ 290 (735)
T KOG0308|consen 256 ---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS 290 (735)
T ss_pred ---CceEEEeeCCCcceEEecCCCCcEEecccCCchhh
Confidence 6799999999999999996 799999999985333
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=8.2e-26 Score=186.29 Aligned_cols=244 Identities=18% Similarity=0.244 Sum_probs=182.6
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+-.++|+++.|.++++++++++.|+.+++|+++..+ ...++.+|.
T Consensus 214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----------------------~~~TLsGHt--------- 261 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----------------------LRHTLSGHT--------- 261 (459)
T ss_pred hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-----------------------hhhhhcccc---------
Confidence 344567889999999999999999999999999998655 467899999
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|+++.|... ...+++|+.|.+|++||+....+....-..... . .+... ...
T Consensus 262 ---dkVt~ak~~~~--~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~c---------n-------DI~~~--~~~---- 314 (459)
T KOG0288|consen 262 ---DKVTAAKFKLS--HSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQC---------N-------DIVCS--ISD---- 314 (459)
T ss_pred ---cceeeehhhcc--ccceeeccccchhhhhhhhhhheeccccccccc---------c-------ceEec--cee----
Confidence 78999999754 335999999999999999987766533221100 0 11111 222
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
++++..|+.|++|| .+.. .+.... ..+ +.|+++..++++..+.++ .|.++.+.|+++ ....
T Consensus 315 --------~~SgH~DkkvRfwD-~Rs~------~~~~sv-~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~ 376 (459)
T KOG0288|consen 315 --------VISGHFDKKVRFWD-IRSA------DKTRSV-PLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIR 376 (459)
T ss_pred --------eeecccccceEEEe-ccCC------ceeeEe-ecC-cceeeEeeccCCeEEeeecCCCceeeeeccc-ccEE
Confidence 38999999999999 5442 222222 333 489999999999988887 899999999994 4444
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
..+... .+.. ....+.+.|||++ .|+++|+.||.|+||++.+++.. +.+..... ...|+++.
T Consensus 377 ~~~sA~--g~k~-asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE----~~l~~s~s----------~~aI~s~~ 438 (459)
T KOG0288|consen 377 QTFSAE--GFKC-ASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLE----KVLSLSTS----------NAAITSLS 438 (459)
T ss_pred EEeecc--cccc-ccccceeEECCCC-ceeeeccCCCcEEEEEccCceEE----EEeccCCC----------CcceEEEE
Confidence 443221 1221 1226889999999 99999999999999999999765 44443321 13699999
Q ss_pred EccCCCEEEEeC-CCeEEEEE
Q 015363 349 FARNGRHILSRD-YMTLKLWD 368 (408)
Q Consensus 349 ~spdg~~l~s~~-d~~v~~wd 368 (408)
|+|.|..|++++ ++.+.+|.
T Consensus 439 W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EcCCCchhhcccCCcceEecC
Confidence 999999999997 59999993
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=187.44 Aligned_cols=263 Identities=16% Similarity=0.166 Sum_probs=186.4
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
....|++++|++.|..|++.+..-..+|+|.++.+.. ...+|.....++..+..|-.
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~-----------------------e~~KGDQYI~Dm~nTKGHia 269 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV-----------------------EFSKGDQYIRDMYNTKGHIA 269 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceee-----------------------eeeccchhhhhhhccCCcee
Confidence 4668999999999998888888889999998876531 12233333333333333448
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
.++|.+|+|... ..|++++.||++++|++...+ ..++++..... ...| .+..++|+++|+.+
T Consensus 270 ~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~-----g~Rv-----~~tsC~~nrdg~~i------ 332 (641)
T KOG0772|consen 270 ELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG-----GKRV-----PVTSCAWNRDGKLI------ 332 (641)
T ss_pred eeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccCC-----Cccc-----CceeeecCCCcchh------
Confidence 899999998644 579999999999999998654 23343332211 1111 12368999999998
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeecccccc--ceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
++|..||.|.+|+ .... ...+...+..+|.. .|++|+|+++|++|++- .|+++++||++..++++.
T Consensus 333 ------Aagc~DGSIQ~W~-~~~~----~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 333 ------AAGCLDGSIQIWD-KGSR----TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred ------hhcccCCceeeee-cCCc----ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 9999999999999 4221 12222222367766 89999999999999997 999999999998887765
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC------CCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
... .+.. .-.-+.++|+|+. +++++|+. .|.+.+||..+...+ +.+.-. ...
T Consensus 402 ~~t----gL~t-~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v----~ki~i~------------~aS 459 (641)
T KOG0772|consen 402 VRT----GLPT-PFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTV----YKIDIS------------TAS 459 (641)
T ss_pred hhc----CCCc-cCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeE----EEecCC------------Cce
Confidence 421 1111 2234679999999 99999864 478999999887654 222222 257
Q ss_pred eEEEEEccCCCEEEEe-CCCeEEEEEC
Q 015363 344 ISDIKFARNGRHILSR-DYMTLKLWDI 369 (408)
Q Consensus 344 i~~~~~spdg~~l~s~-~d~~v~~wd~ 369 (408)
|..+.|+|.-+.|.+| +||.++++=-
T Consensus 460 vv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 460 VVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred EEEEeecchhhheeeecCCCceEEEEC
Confidence 8999999987766666 6888888743
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.9e-25 Score=176.62 Aligned_cols=267 Identities=16% Similarity=0.234 Sum_probs=197.7
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+..+|.+.|+.++.......+.+++.|.+.+||.++++.+ +..+.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-----------------------L~~Y~GH~--------- 190 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-----------------------LATYTGHT--------- 190 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccc-----------------------eeeecccc---------
Confidence 5678999999999988778999999999999999998864 67899999
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC----c----------EEEEe-ccCCCC--cccCCCCC-eEee-
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK----K----------VKKVF-DWNVHP--EKAAGNGP-IFGS- 170 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~----~----------~~~~~-~~~~~~--~~~~~~~~-v~~~- 170 (408)
+.|++|+|+++ +.++++++.|++..||...-. + ..... ..+... .....++. +...
T Consensus 191 ---GSVNsikfh~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl 265 (481)
T KOG0300|consen 191 ---GSVNSIKFHNS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPL 265 (481)
T ss_pred ---cceeeEEeccc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeee
Confidence 77999999876 779999999999999973210 0 00000 000000 00000000 0000
Q ss_pred ------cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC
Q 015363 171 ------HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (408)
Q Consensus 171 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (408)
.....+..|...|+.+ ++++.|.+..+|| +.. +..+.. +.+|+...+.++-+|.
T Consensus 266 ~~ltgH~~vV~a~dWL~gg~Q~------------vTaSWDRTAnlwD-VEt------ge~v~~-LtGHd~ELtHcstHpt 325 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLAGGQQM------------VTASWDRTANLWD-VET------GEVVNI-LTGHDSELTHCSTHPT 325 (481)
T ss_pred eeeeccccceEehhhhcCccee------------eeeeccccceeee-ecc------Cceecc-ccCcchhccccccCCc
Confidence 0111234566666665 8999999999999 533 444444 4899999999999999
Q ss_pred CCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccc
Q 015363 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (408)
Q Consensus 245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 323 (408)
.++++++ .|.+.++||++..-+...+ +.+|...|+++.|..+. .+++|+.|.+|++||+++.. .++.
T Consensus 326 QrLVvTsSrDtTFRLWDFReaI~sV~V-------FQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMR---splA 393 (481)
T KOG0300|consen 326 QRLVVTSSRDTTFRLWDFREAIQSVAV-------FQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMR---SPLA 393 (481)
T ss_pred ceEEEEeccCceeEeccchhhcceeee-------ecccccceeEEEEecCC--ceeecCCCceEEEeeecccc---Ccce
Confidence 9999998 8999999999944444443 89999999999999885 68999999999999999875 3445
Q ss_pred ccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCCCCCceeeee
Q 015363 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~ 380 (408)
++... ++++.++.+..+..|+.-.| ..|++||++ |..+..++
T Consensus 394 TIRtd-------------S~~NRvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlP 436 (481)
T KOG0300|consen 394 TIRTD-------------SPANRVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLP 436 (481)
T ss_pred eeecC-------------CccceeEeecCCceEEeccCCceEEEEecC--CCccccCC
Confidence 55544 67999999987778888765 999999996 45555554
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.3e-23 Score=157.98 Aligned_cols=266 Identities=20% Similarity=0.316 Sum_probs=179.6
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
+.....|.+++|+|.|.+.|+|+...+++|.....-... + .....+..|.......-+.|.
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~---r-----~~hea~~~pp~v~~kr~khhk----------- 89 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL---R-----HAHEAAKQPPSVLCKRNKHHK----------- 89 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc---c-----cccccccCCCeEEeeeccccC-----------
Confidence 345678999999999999999999999999875432210 0 011111112111222234444
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE---eccCCCCcccCCCCCeEeecCCceeeEEccC---CCe
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV---FDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN---GGC 185 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~ 185 (408)
+.|.|.+|+|. |+++++|+.|.+|++...+...+..+ ++++. .+|.+. .++|..+ +..
T Consensus 90 -gsiyc~~ws~~--geliatgsndk~ik~l~fn~dt~~~~g~dle~nm------hdgtir-------dl~fld~~~s~~~ 153 (350)
T KOG0641|consen 90 -GSIYCTAWSPC--GELIATGSNDKTIKVLPFNADTCNATGHDLEFNM------HDGTIR-------DLAFLDDPESGGA 153 (350)
T ss_pred -ccEEEEEecCc--cCeEEecCCCceEEEEecccccccccCcceeeee------cCCcee-------eeEEecCCCcCce
Confidence 78999999765 99999999999999988775443221 11111 133343 4555433 222
Q ss_pred eecccccccCccccC-CCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363 186 GERNFGCASNDSSFP-PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (408)
Q Consensus 186 l~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (408)
+ +++ |..|-.|.+=| .. .++..+.+ .+|.+.|.++ ++-++-.+++| .|.+|++||++
T Consensus 154 i-----------l~s~gagdc~iy~td-c~------~g~~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr- 212 (350)
T KOG0641|consen 154 I-----------LASAGAGDCKIYITD-CG------RGQGFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR- 212 (350)
T ss_pred E-----------EEecCCCcceEEEee-cC------CCCcceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-
Confidence 2 233 34455555544 22 23444444 8899988876 34467899999 89999999999
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
-..+.++++..-..-.-....|..++..|.| ++|++|-.|....+||++.+..+ +.+..| +..
T Consensus 213 v~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~i----q~f~ph------------sad 275 (350)
T KOG0641|consen 213 VNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI----QRFHPH------------SAD 275 (350)
T ss_pred ccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee----eeeCCC------------ccc
Confidence 4555555432110000123668999999999 99999999999999999998554 555555 688
Q ss_pred eEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363 344 ISDIKFARNGRHILSRD-YMTLKLWDIN 370 (408)
Q Consensus 344 i~~~~~spdg~~l~s~~-d~~v~~wd~~ 370 (408)
|.++.|||...||++++ |..|++-|+.
T Consensus 276 ir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eeEEEeCCCceEEEEecccceEEEeecc
Confidence 99999999999999998 6999999996
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5e-24 Score=186.03 Aligned_cols=260 Identities=14% Similarity=0.227 Sum_probs=198.0
Q ss_pred EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (408)
Q Consensus 39 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (408)
+-++|+ ..+.||+|.. ..|.+|+..++... ....-++ ..|+++
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~-----------------------~l~~~~~------------~~vtSv 223 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVT-----------------------ELCSFGE------------ELVTSV 223 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceE-----------------------EeEecCC------------CceEEE
Confidence 346777 4456777754 48999998877531 1112223 669999
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (408)
Q Consensus 119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (408)
.|+++ |.+|++|..+|.|.|||..+.+....+.... .+.+- +++|. +..+
T Consensus 224 ~ws~~--G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h-------~~rvg-------~laW~--~~~l------------ 273 (484)
T KOG0305|consen 224 KWSPD--GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH-------ASRVG-------SLAWN--SSVL------------ 273 (484)
T ss_pred EECCC--CCEEEEeecCCeEEEEehhhccccccccCCc-------CceeE-------EEecc--CceE------------
Confidence 99755 8999999999999999999887766665521 12233 56777 4443
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (408)
.+|+.++.|..+| ++..+.... . +.+|...|..++|++|+.+||+| .|+.+.|||.......+.
T Consensus 274 ssGsr~~~I~~~d-vR~~~~~~~-----~-~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~-------- 338 (484)
T KOG0305|consen 274 SSGSRDGKILNHD-VRISQHVVS-----T-LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT-------- 338 (484)
T ss_pred EEecCCCcEEEEE-Eecchhhhh-----h-hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------
Confidence 8899999999999 554332222 1 47899999999999999999999 999999999964444443
Q ss_pred ccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363 278 MEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (408)
Q Consensus 278 ~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~ 355 (408)
+..|...|..++|+|-...+||+|+. |+.|++||..++..+ ...... +.|..|.|++..+-
T Consensus 339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdtg-------------sQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDTG-------------SQVCSLIWSKKYKE 401 (484)
T ss_pred EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----cccccC-------------CceeeEEEcCCCCE
Confidence 67899999999999988789999865 999999999999765 333322 57999999999877
Q ss_pred EEEe---CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeee
Q 015363 356 ILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM 398 (408)
Q Consensus 356 l~s~---~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (408)
|+++ +++.|.||+..+ .+++..+.+|...+-.+...-+++.+
T Consensus 402 i~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 402 LLSTHGYSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETI 446 (484)
T ss_pred EEEecCCCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEE
Confidence 7775 358999999998 79999999999986666655555543
No 93
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.3e-25 Score=195.06 Aligned_cols=286 Identities=15% Similarity=0.238 Sum_probs=205.0
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
....++|+.+++-..|+.+++. .++||.+........ +...+..... .--.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~-------------------~~~~~k~kqn---------~~~S 89 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK-------------------CNHRFKTKQN---------KFYS 89 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc-------------------eeeecccccc---------eeee
Confidence 4557788889998888888876 889998765542100 1111111110 0033
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCC---CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
+.+|.|. +-..++||+++..|.|.+||+.. .+....+..|.. .+. .+.|++....+
T Consensus 90 ~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R--------s~~-------~ldfh~tep~i----- 148 (839)
T KOG0269|consen 90 AADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER--------SAN-------KLDFHSTEPNI----- 148 (839)
T ss_pred hhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhHhhhhcc--------cee-------eeeeccCCccE-----
Confidence 6778997 44567999999999999999986 333333333321 122 57788776554
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+++|+.||.|++|| ++..+.... ..+....|+.|+|+|. +.+|+++ +.|.+++||++...++..
T Consensus 149 ------liSGSQDg~vK~~D-lR~~~S~~t-------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~ 214 (839)
T KOG0269|consen 149 ------LISGSQDGTVKCWD-LRSKKSKST-------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK 214 (839)
T ss_pred ------EEecCCCceEEEEe-eeccccccc-------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence 69999999999999 655443222 2445678999999986 5788888 899999999998777654
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
. +..|.++|.++.|+|++ .+||+|+.|+.|+|||+.+... .+..++.. ..+|.+++|
T Consensus 215 k-------~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~--~~~~tInT-------------iapv~rVkW 271 (839)
T KOG0269|consen 215 K-------LTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRA--KPKHTINT-------------IAPVGRVKW 271 (839)
T ss_pred H-------hhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCc--cceeEEee-------------cceeeeeee
Confidence 3 78999999999999988 9999999999999999986543 11222222 268999999
Q ss_pred ccCCC-EEEEe---CCCeEEEEECCCCCCceeeeeecccccceEEecC--CCeeeeeeceeeec
Q 015363 350 ARNGR-HILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSS--KNYFMGLDNIHTLY 407 (408)
Q Consensus 350 spdg~-~l~s~---~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~ 407 (408)
-|+.. .|+++ .|-.|+|||++-+.-+..++..|......++-.. ...++.+.+..+++
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 99765 56665 3589999999988899999999999877776555 33345555444443
No 94
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.5e-23 Score=189.06 Aligned_cols=226 Identities=10% Similarity=0.066 Sum_probs=155.3
Q ss_pred eecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEE
Q 015363 53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132 (408)
Q Consensus 53 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~ 132 (408)
|+.++.|+||+..... .+..+.+|. +.|.+++|+|. ++.+|++|
T Consensus 50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~-~~~lLASg 93 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPC-FSEILASG 93 (568)
T ss_pred CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCC-CCCEEEEE
Confidence 5567788888865432 345688898 77999999864 24699999
Q ss_pred eCCCeEEEEEcCCCcE--------EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC
Q 015363 133 TNDKTIKLWKVQEKKV--------KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (408)
Q Consensus 133 ~~d~~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (408)
+.|++|++||+.++.. ...+..+ ...|. .+.|+|++..+ +++++.|
T Consensus 94 S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH--------~~~V~-------sVaf~P~g~~i-----------LaSgS~D 147 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVKEIKDPQCILKGH--------KKKIS-------IIDWNPMNYYI-----------MCSSGFD 147 (568)
T ss_pred eCCCeEEEEECCCCCccccccccceEEeecC--------CCcEE-------EEEECCCCCeE-----------EEEEeCC
Confidence 9999999999986421 1111111 22343 78999998764 3688999
Q ss_pred ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcC
Q 015363 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (408)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
+.|++|| +.... ....+ .|...|.+++|+|+|.+|+++ .|+.|++||+++.. .... +.+|.+
T Consensus 148 gtIrIWD-l~tg~------~~~~i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~t-------l~gH~g 210 (568)
T PTZ00420 148 SFVNIWD-IENEK------RAFQI--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASS-------FHIHDG 210 (568)
T ss_pred CeEEEEE-CCCCc------EEEEE--ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEE-------EecccC
Confidence 9999999 54322 11222 245679999999999999988 89999999999543 3332 456766
Q ss_pred CeEE-----EEEcCCCCceEEEEeCCC----eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363 284 VITS-----AEFHPTHCNMLAYSSSKG----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (408)
Q Consensus 284 ~v~~-----~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~ 354 (408)
.+.. ..|++++ .+|++++.|+ +|+|||++.... ++..+..+. +.+.+......++|.
T Consensus 211 ~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~---pl~~~~ld~----------~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 211 GKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTS---ALVTMSIDN----------ASAPLIPHYDESTGL 276 (568)
T ss_pred CceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCC---ceEEEEecC----------CccceEEeeeCCCCC
Confidence 5432 3456888 7788877664 799999996432 223332221 123333333455688
Q ss_pred EEEEe-CCCeEEEEECCC
Q 015363 355 HILSR-DYMTLKLWDINM 371 (408)
Q Consensus 355 ~l~s~-~d~~v~~wd~~~ 371 (408)
++++| +|+.|++|++..
T Consensus 277 l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEEEECCCeEEEEEccC
Confidence 88888 589999999976
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.5e-23 Score=166.93 Aligned_cols=279 Identities=13% Similarity=0.163 Sum_probs=201.6
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
..+.|++|.|+|.+..|+.++.||.+++|+....... ..-.|. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~------------------------~~~~~~------------~ 55 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK------------------------LKFKHG------------A 55 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh------------------------hheecC------------C
Confidence 3678999999999998999999999999998766431 112233 7
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
++.+.+|.+ ...+++|+.||.|+++|+.++....+.... ..+. ++...+...++
T Consensus 56 plL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~igth~---------~~i~-------ci~~~~~~~~v------- 109 (323)
T KOG1036|consen 56 PLLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQIGTHD---------EGIR-------CIEYSYEVGCV------- 109 (323)
T ss_pred ceeeeeccC---CceEEEeccCceEEEEEecCCcceeeccCC---------CceE-------EEEeeccCCeE-------
Confidence 799999953 458999999999999999998766554442 2233 67777777776
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
++|+.|+.|++|| .+... +... ......|.++.. .++.|++| .+..|.+||+++....++..
T Consensus 110 -----IsgsWD~~ik~wD-~R~~~------~~~~--~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~r- 172 (323)
T KOG1036|consen 110 -----ISGSWDKTIKFWD-PRNKV------VVGT--FDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRR- 172 (323)
T ss_pred -----EEcccCccEEEEe-ccccc------cccc--cccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhc-
Confidence 9999999999999 44311 1111 122346777765 46778887 99999999999766655321
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
-...+-.++++++-|++ .-+++++-||+|.+=.+.........-..|+.|.... . =....-+|++++|+|-
T Consensus 173 -----eS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~-~--~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 173 -----ESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE-K--DTEIIYPVNAIAFHPI 243 (323)
T ss_pred -----cccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeeccc-C--CceEEEEeceeEeccc
Confidence 23345668999999987 6788889999999866655422222225666664211 0 0111247999999999
Q ss_pred CCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeee
Q 015363 353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLD 401 (408)
Q Consensus 353 g~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 401 (408)
-..|||| +||.|.+||+.+ .+.++.+...+.....+..-.++.++++-
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~-rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFN-RKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred cceEEecCCCceEEEccCcc-hhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 8899998 689999999997 78888887776667777777778787763
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=173.56 Aligned_cols=223 Identities=17% Similarity=0.258 Sum_probs=165.0
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----EEEEeccCCCCcccCCCCCeE----eecCCceeeEEccCCC
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIF----GSHVSAIPKSYMANGG 184 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~ 184 (408)
+++.+.+|+| ||.++|+|+.|..|+|.|++.-- ......... .+ .-++. --.+....+.|+|...
T Consensus 113 ~~cR~aafs~--DG~lvATGsaD~SIKildvermlaks~~~em~~~~~--qa---~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 113 SPCRAAAFSP--DGSLVATGSADASIKILDVERMLAKSKPKEMISGDT--QA---RHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred cceeeeeeCC--CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc--cc---CCceEeehhhccCcccceeecchhh
Confidence 8899999965 59999999999999999997321 111111100 00 00111 1113334788888888
Q ss_pred eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (408)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (408)
.| ++++.|++|+++| +..... .+..+.+ ....+|+++.|+|.|.+|+.| +-..+++||+++
T Consensus 186 IL------------iS~srD~tvKlFD-fsK~sa---KrA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 186 IL------------ISGSRDNTVKLFD-FSKTSA---KRAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred eE------------EeccCCCeEEEEe-cccHHH---HHHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 77 9999999999999 544222 1222222 233679999999999999999 889999999994
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccc-cccCCCCccccccccc
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-EQEAPGTRSFFTEIIA 342 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~ 342 (408)
-+++... ..-..|.+.|+++.+++.+ ++.++++.||.|+|||--+++.+ .++. .|. .+
T Consensus 248 -~Qcfvsa----nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~AH~-----------gs 306 (430)
T KOG0640|consen 248 -YQCFVSA----NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGNAHG-----------GS 306 (430)
T ss_pred -eeEeeec----CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHhhcC-----------Cc
Confidence 4444321 1246789999999999999 99999999999999998877543 4443 232 36
Q ss_pred eeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
.|.+..|..+|+||++++ |..|++|.+.+ +++++.+.|-
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGA 346 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGA 346 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecC-CceEEEEecC
Confidence 899999999999999875 89999999998 8999999875
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=5.7e-25 Score=169.87 Aligned_cols=276 Identities=14% Similarity=0.212 Sum_probs=218.1
Q ss_pred ceeeccceEEEEECC---CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363 31 EVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~---~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (408)
-.+|+.+|-.++||| +|-+|++++.||.-.+-+-+++. .+-+|.+|.
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----------------------wigtfeghk------- 59 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----------------------WIGTFEGHK------- 59 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----------------------cEEeeeccC-------
Confidence 357999999999996 79999999999999888877766 467899999
Q ss_pred ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
+.|.+... +.|..+-|+++.|-+-++||.-++..+..+.... .|. .++|+.|.+.|
T Consensus 60 -----gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhsf~hkh---------ivk-------~~af~~ds~~l- 115 (334)
T KOG0278|consen 60 -----GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHSFEHKH---------IVK-------AVAFSQDSNYL- 115 (334)
T ss_pred -----cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhhhhhhh---------eee-------eEEecccchhh-
Confidence 77888888 4556677888999999999999988776655432 122 68999999988
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
++|+.+..+++|| +.+.+. +... ..+|.+.|+.+-|....+.++++ +|++|++||.+++.
T Consensus 116 -----------ltgg~ekllrvfd-ln~p~A-----pp~E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt- 176 (334)
T KOG0278|consen 116 -----------LTGGQEKLLRVFD-LNRPKA-----PPKE-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT- 176 (334)
T ss_pred -----------hccchHHHhhhhh-ccCCCC-----Cchh-hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-
Confidence 9999999999999 554332 1222 37999999999999988888887 99999999999554
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
..+.+. ....|+++.++++| ++|.+ ...+.|++||..+...+ +.++.+ ..|.+
T Consensus 177 ~v~sL~--------~~s~VtSlEvs~dG-~ilTi-a~gssV~Fwdaksf~~l----Ks~k~P-------------~nV~S 229 (334)
T KOG0278|consen 177 EVQSLE--------FNSPVTSLEVSQDG-RILTI-AYGSSVKFWDAKSFGLL----KSYKMP-------------CNVES 229 (334)
T ss_pred EEEEEe--------cCCCCcceeeccCC-CEEEE-ecCceeEEeccccccce----eeccCc-------------ccccc
Confidence 444322 25668999999999 65544 56788999999988655 666655 57999
Q ss_pred EEEccCCCEEEEeC-CCeEEEEECCCCCCceeee-eecccccceEEecCCCeeeee---eceeeec
Q 015363 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKVMHSSKNYFMGL---DNIHTLY 407 (408)
Q Consensus 347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---d~~~~~~ 407 (408)
...+|+...+++|+ |..++-||..+ +..+-.+ ++|.+..-++...-++++.++ |--.+||
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 99999988888885 79999999998 6777776 899888888877666666554 4445554
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.4e-24 Score=178.56 Aligned_cols=248 Identities=17% Similarity=0.270 Sum_probs=183.9
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
.|...|.+++.|+||+|||+|+.|..|.||+..+.+. +..+.+|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh-----------------------v~~~~ghr------------ 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH-----------------------VKVFKGHR------------ 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccch-----------------------hhcccccc------------
Confidence 7999999999999999999999999999999988764 45689998
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
+.|.+++|-.. -..+++++.|++|++|+++....+.++..|... |. .+.-..-++++
T Consensus 245 ~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~--------v~-------~IdaL~reR~v------ 301 (479)
T KOG0299|consen 245 GAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDG--------VL-------GIDALSRERCV------ 301 (479)
T ss_pred cceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccc--------ee-------eechhcccceE------
Confidence 77999999543 457999999999999999987766666665432 22 34444455654
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (408)
-+|+.|+++++|+ +.. ..+.+..++.+.+-|++|-.+ ..|++| ++|.|.+|++...+ ++.+.
T Consensus 302 ------tVGgrDrT~rlwK-i~e--------esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk-plf~~ 364 (479)
T KOG0299|consen 302 ------TVGGRDRTVRLWK-IPE--------ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK-PLFTS 364 (479)
T ss_pred ------EeccccceeEEEe-ccc--------cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC-ceeEe
Confidence 6678999999999 411 112224677788999998754 467777 99999999998444 43332
Q ss_pred ecCCCcc-----cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 272 DVKPANM-----EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 272 ~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
.+-.... ..+..+|++++..|.. .++|+|+.+|.|++|-+..+.....++..+.-. +.|++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~-------------GfVNs 430 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV-------------GFVNS 430 (479)
T ss_pred eccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecccc-------------cEEEE
Confidence 2111111 1223489999999998 999999999999999999885433334444433 78999
Q ss_pred EEEccCCCEEEEe-C-CCeEEEEEC
Q 015363 347 IKFARNGRHILSR-D-YMTLKLWDI 369 (408)
Q Consensus 347 ~~~spdg~~l~s~-~-d~~v~~wd~ 369 (408)
++|+++|++|++| + ...+-=|-.
T Consensus 431 l~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred EEEccCCCEEEEecccccccceeeE
Confidence 9999999988887 3 444444433
No 99
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.6e-23 Score=162.92 Aligned_cols=245 Identities=13% Similarity=0.164 Sum_probs=182.1
Q ss_pred cccceeeecccCcCcccceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (408)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (408)
...|..... .........+|.+.|-.++|+|. ..+|++++.|.+|++||...+++.
T Consensus 44 v~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~---------------------- 100 (313)
T KOG1407|consen 44 VSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT---------------------- 100 (313)
T ss_pred eEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE----------------------
Confidence 344555543 12223345689999999999985 679999999999999999877642
Q ss_pred eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (408)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (408)
...... ..-.-+.|+|+ |++++++..|..|.+.|.++.+.....+..... .
T Consensus 101 -~~i~~~-------------~eni~i~wsp~--g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~---------n---- 151 (313)
T KOG1407|consen 101 -ARIETK-------------GENINITWSPD--GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV---------N---- 151 (313)
T ss_pred -EEeecc-------------CcceEEEEcCC--CCEEEEecCcccEEEEEecccceeehhccccee---------e----
Confidence 111111 11345788655 889999999999999999988766554443211 1
Q ss_pred CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-
Q 015363 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (408)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 251 (408)
.++|+.++... |.....|.|.+.. . +.-+++..+ .+|.....||.|+|+|++||+|
T Consensus 152 ---e~~w~~~nd~F------------flt~GlG~v~ILs-y------psLkpv~si-~AH~snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 152 ---EISWNNSNDLF------------FLTNGLGCVEILS-Y------PSLKPVQSI-KAHPSNCICIEFDPDGRYFATGS 208 (313)
T ss_pred ---eeeecCCCCEE------------EEecCCceEEEEe-c------ccccccccc-ccCCcceEEEEECCCCceEeecc
Confidence 35666555554 6677778888754 1 223444454 8999999999999999999999
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (408)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (408)
.|..+.+||++ .--+.+. +..+.-+|+.++|+-+| ++||+|+.|..|-|=++.+|..+ ..++..
T Consensus 209 ADAlvSLWD~~-ELiC~R~-------isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd~~----~eI~~~--- 272 (313)
T KOG1407|consen 209 ADALVSLWDVD-ELICERC-------ISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGDRV----WEIPCE--- 272 (313)
T ss_pred ccceeeccChh-Hhhhhee-------eccccCceEEEEeccCc-ceeeccCccceEEeEecccCCeE----EEeecc---
Confidence 99999999998 3334443 56678899999999999 99999999999999999999765 333322
Q ss_pred CCccccccccceeEEEEEccCCCEEEEe
Q 015363 332 GTRSFFTEIIASISDIKFARNGRHILSR 359 (408)
Q Consensus 332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~ 359 (408)
++...++|+|...+||-+
T Consensus 273 ----------~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 273 ----------GPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred ----------CCceeEEecCCCceeeEE
Confidence 678899999999888854
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=4.3e-24 Score=174.31 Aligned_cols=228 Identities=17% Similarity=0.265 Sum_probs=168.7
Q ss_pred ceeeccceEEEEECCCC--CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
.+.|.+.|+.+.-++-+ .+.|+-+..|.|.||++.... +.+...+..+.. -..+.+.++.+|.++
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l------~~l~~~~~~~~~-s~~~Pl~t~~ghk~E------ 213 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL------NALSEPGLEVKD-SEFRPLFTFNGHKGE------ 213 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh------hhhcCccccccc-cccCceEEecccCcc------
Confidence 46789999999888764 467777889999999986432 222222221211 345566778888844
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
=..++|||...| .|++|..-+.|++|...++....- ..
T Consensus 214 ------Gy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd-------------------------------~~---- 251 (440)
T KOG0302|consen 214 ------GYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVD-------------------------------QR---- 251 (440)
T ss_pred ------ceeeeccccccc-ccccCccccceEeeeeccCceeec-------------------------------Cc----
Confidence 788999997666 688998889999999887654320 00
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCc
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
. +.+|...|-.++|+|.. ..|++| -|++|+|||++...+
T Consensus 252 --------------------------------------P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 252 --------------------------------------P-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred --------------------------------------c-ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 0 25688889999999986 567777 899999999996544
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
...+. ...|.+.|+.|+|+..- .+||+|+.||+++|||+|+.+.- .|+..|+-| ..+|++
T Consensus 293 ~~~~~------~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~H------------k~pIts 352 (440)
T KOG0302|consen 293 KAAVS------TKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-QPVATFKYH------------KAPITS 352 (440)
T ss_pred cceeE------eeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-CcceeEEec------------cCCeeE
Confidence 33221 46789999999999998 69999999999999999987542 444455544 689999
Q ss_pred EEEccC--CCEEEEeCCCeEEEEECCCC
Q 015363 347 IKFARN--GRHILSRDYMTLKLWDINMD 372 (408)
Q Consensus 347 ~~~spd--g~~l~s~~d~~v~~wd~~~~ 372 (408)
+.|+|. +.+.++|+|..|.+||+..+
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeecc
Confidence 999994 34444557899999999863
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=173.13 Aligned_cols=247 Identities=16% Similarity=0.220 Sum_probs=191.5
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
..+|...|+.+.|+|+...+++++.|-.|+||....... ......|+
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----------------------~~~~~~h~---------- 303 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----------------------PTSSRPHE---------- 303 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----------------------cccccccc----------
Confidence 458999999999999999999999999999999766543 24567777
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
++|+.+..+|+ |+||++++.|++..+.|++++............ ..-.+..|+|||..+
T Consensus 304 --~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~-------------v~~ts~~fHpDgLif---- 362 (506)
T KOG0289|consen 304 --EPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVVSDETSD-------------VEYTSAAFHPDGLIF---- 362 (506)
T ss_pred --ccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEEeecccc-------------ceeEEeeEcCCceEE----
Confidence 88999999766 889999999999999999999877765553211 111268999999887
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
.+|..|+.+++|| +.... .... +.+|.++|..|+|+.+|-+||++ +|+.|++||++..+ .++
T Consensus 363 --------gtgt~d~~vkiwd-lks~~------~~a~-Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-n~k 425 (506)
T KOG0289|consen 363 --------GTGTPDGVVKIWD-LKSQT------NVAK-FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-NFK 425 (506)
T ss_pred --------eccCCCceEEEEE-cCCcc------cccc-CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-ccc
Confidence 9999999999999 65432 2223 48899999999999999999999 99999999999443 444
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
.+. +.. ...+.++.|.+.| .+|+.++.|=+|++++-.+... +.+..+..| ++..+.+.|
T Consensus 426 t~~-----l~~-~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W--~~~~~~~~~------------sg~st~v~F 484 (506)
T KOG0289|consen 426 TIQ-----LDE-KKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSW--TEIKELADH------------SGLSTGVRF 484 (506)
T ss_pred eee-----ccc-cccceeEEEcCCC-CeEEeecceeEEEEEecccccc--eeeehhhhc------------ccccceeee
Confidence 432 232 2368999999999 9999988776676666444321 222333333 567889999
Q ss_pred ccCCCEEEEeC-CCeEEEEEC
Q 015363 350 ARNGRHILSRD-YMTLKLWDI 369 (408)
Q Consensus 350 spdg~~l~s~~-d~~v~~wd~ 369 (408)
..+.+++++++ |..++++.+
T Consensus 485 g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 485 GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceEEeeccchhheEEeec
Confidence 99999999997 677777654
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=176.70 Aligned_cols=256 Identities=10% Similarity=0.158 Sum_probs=190.0
Q ss_pred ceeeccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.....+.|++++|+|... -+|+.+. -++.||+..+.... ..+..-.
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-----------------------k~~srFk--------- 68 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-----------------------KTFSRFK--------- 68 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-----------------------hhHHhhc---------
Confidence 344568899999999643 3555543 37999998765421 1222222
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|.++.|. .||.++|+|...|.|+++|+.+...+..+..+..+ +. .+.|+|++..+
T Consensus 69 ---~~v~s~~fR--~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~ap--------v~-------~~~f~~~d~t~--- 125 (487)
T KOG0310|consen 69 ---DVVYSVDFR--SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAP--------VH-------VTKFSPQDNTM--- 125 (487)
T ss_pred ---cceeEEEee--cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCc--------ee-------EEEecccCCeE---
Confidence 669999995 56999999999999999997765555555555443 22 46788887765
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
+++|+.|+.+++|| +.... ....+.+|...|++.+|+|... ++++| .||.|++||++.....
T Consensus 126 --------l~s~sDd~v~k~~d-~s~a~-------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~ 189 (487)
T KOG0310|consen 126 --------LVSGSDDKVVKYWD-LSTAY-------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR 189 (487)
T ss_pred --------EEecCCCceEEEEE-cCCcE-------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce
Confidence 58899999999999 54422 1323589999999999999765 77888 8999999999966433
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
... -.|..+|-++.+-|.| .++|+++ ...|++||+-+|... +..+..| ...|+|+
T Consensus 190 v~e--------lnhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~ql---l~~~~~H------------~KtVTcL 244 (487)
T KOG0310|consen 190 VVE--------LNHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQL---LTSMFNH------------NKTVTCL 244 (487)
T ss_pred eEE--------ecCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCcee---hhhhhcc------------cceEEEE
Confidence 322 3488999999999999 8888876 467999999977543 1333334 4789999
Q ss_pred EEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 348 ~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
.+..++..|++|+ |+.|++||+.+ -+.+..+.....
T Consensus 245 ~l~s~~~rLlS~sLD~~VKVfd~t~-~Kvv~s~~~~~p 281 (487)
T KOG0310|consen 245 RLASDSTRLLSGSLDRHVKVFDTTN-YKVVHSWKYPGP 281 (487)
T ss_pred EeecCCceEeecccccceEEEEccc-eEEEEeeecccc
Confidence 9999999999998 89999999876 577777665433
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-23 Score=166.59 Aligned_cols=248 Identities=14% Similarity=0.236 Sum_probs=183.4
Q ss_pred cceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeee
Q 015363 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (408)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 95 (408)
.|++... +.........|.++|.+++|+.||..+++|+.|+.+++||+.+++. ..
T Consensus 54 ~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~------------------------~~ 108 (347)
T KOG0647|consen 54 IWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV------------------------SQ 108 (347)
T ss_pred EEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe------------------------ee
Confidence 4666653 3333345567999999999999999999999999999999998864 46
Q ss_pred eccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCce
Q 015363 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (408)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (408)
+..|. .+|.++.|-+..+-..|++|+.|++|+.||++....+..+.++. .+++.
T Consensus 109 v~~Hd------------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---------RvYa~----- 162 (347)
T KOG0647|consen 109 VAAHD------------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---------RVYAA----- 162 (347)
T ss_pred eeecc------------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---------eeeeh-----
Confidence 78888 88999999887666789999999999999999887777666643 23211
Q ss_pred eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (408)
|-. ...++.+..++.|.+|+ +.+....... ....-.-.+++|+..++....+.| -+|
T Consensus 163 ------Dv~----------~pm~vVata~r~i~vyn-L~n~~te~k~-----~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 163 ------DVL----------YPMAVVATAERHIAVYN-LENPPTEFKR-----IESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ------hcc----------CceeEEEecCCcEEEEE-cCCCcchhhh-----hcCcccceeeEEEEEecCCceEeeeecc
Confidence 111 11236778888899988 5442221110 012223568999999998888888 799
Q ss_pred eEEEEeCCCCCceeeEeecCCCcccCCc---------CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363 255 RINLWNLEISNQSFNIVDVKPANMEDLT---------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (408)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (408)
++.+..++...+ ..-+. +..|. -.|.+|+|+|.. ..|++++.||+..+||-.....+ ++.
T Consensus 221 rv~iq~id~~~~-~~nFt-----FkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kL----k~s 289 (347)
T KOG0647|consen 221 RVAIQYIDDPNP-KDNFT-----FKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKL----KTS 289 (347)
T ss_pred eEEEEecCCCCc-cCcee-----EEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhhh----hcc
Confidence 999999985433 21111 33333 247789999988 89999999999999998876443 555
Q ss_pred ccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (408)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~ 359 (408)
+.+ ..+|++.+|+.+|.++|-+
T Consensus 290 ~~~------------~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 290 ETH------------PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CcC------------CCccceeEecCCCCEEEEE
Confidence 555 4789999999999998865
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=175.54 Aligned_cols=241 Identities=15% Similarity=0.242 Sum_probs=179.8
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-.++|.|++-+|+|.+|+.|+-.|.|++|.+.++.. +..+.+|- +
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-----------------------L~v~~aHY------------Q 124 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-----------------------LNVLSAHY------------Q 124 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------------HHHHHhhc------------c
Confidence 467899999999999999999999999999998873 56678888 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
.|+|+.|+ .||++|++|+.||.|.+|.+..-
T Consensus 125 ~ITcL~fs--~dgs~iiTgskDg~V~vW~l~~l----------------------------------------------- 155 (476)
T KOG0646|consen 125 SITCLKFS--DDGSHIITGSKDGAVLVWLLTDL----------------------------------------------- 155 (476)
T ss_pred ceeEEEEe--CCCcEEEecCCCccEEEEEEEee-----------------------------------------------
Confidence 89999995 66999999999999999986421
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
+++..++ ...+...+ ..|.-.|+++...+.| ..++++ .|.++++||+..+ ..+..
T Consensus 156 -----v~a~~~~---------------~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlt 213 (476)
T KOG0646|consen 156 -----VSADNDH---------------SVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLT 213 (476)
T ss_pred -----cccccCC---------------Cccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEE
Confidence 1111111 12223333 6888889998877653 577777 8999999999944 44333
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc--eeEEEE
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDIK 348 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~ 348 (408)
+- -...+.+++.+|-+ +.+..|+.+|.|.+.++.........+..-..|....-...+.+|.. .|+|++
T Consensus 214 i~--------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 214 IT--------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred Ee--------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 21 25668999999999 99999999999999988765422111122222222223344667777 999999
Q ss_pred EccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE
Q 015363 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM 390 (408)
Q Consensus 349 ~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 390 (408)
.+-||.+|++|+ ||.|++||+.. .++++++....++...+-
T Consensus 285 is~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred EecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhccccceeE
Confidence 999999999997 79999999997 788888875455544443
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.4e-23 Score=184.61 Aligned_cols=248 Identities=15% Similarity=0.266 Sum_probs=183.5
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
..|.+.-+.|+|.|+|.+|++++.||.|++|+....... |+. +.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P~t-----i~~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------PET-----IDISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------Cch-----hhccC-----------
Confidence 478999999999999999999999999999996654210 111 11122
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE---EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK---KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..|.+++- . +.+|++++.+++|.+|...+++.. ..+..+.. .++++.+|+.+
T Consensus 57 -~~v~~ia~--~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r------------------~~~v~g~g~~i-- 111 (933)
T KOG1274|consen 57 -ELVSSIAC--Y--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR------------------DLAVSGSGKMI-- 111 (933)
T ss_pred -ceeEEEee--c--ccceEEeeccceEEEeeCCCCCccceeeeeeccce------------------EEEEecCCcEE--
Confidence 55777776 3 449999999999999999877643 33333221 57899999998
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
+.|+.|-.|++-+ .... ...+. +.+|..+|.++.++|.+++||+. -||.|++||+.. +.+
T Consensus 112 ----------aagsdD~~vK~~~-~~D~------s~~~~-lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~ 172 (933)
T KOG1274|consen 112 ----------AAGSDDTAVKLLN-LDDS------SQEKV-LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GIL 172 (933)
T ss_pred ----------EeecCceeEEEEe-cccc------chhee-ecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chh
Confidence 9999999999866 3221 22223 48999999999999999999999 899999999994 333
Q ss_pred eeEeecCCCcccCC-cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 268 FNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 268 ~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
..++.--....... ...+..++|+|++ ..|+..+.|+.|++|+....... ..+.... +.+.+.+
T Consensus 173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~----f~Lr~~~----------~ss~~~~ 237 (933)
T KOG1274|consen 173 SKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQ----FKLRDKL----------SSSKFSD 237 (933)
T ss_pred hhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeh----eeecccc----------cccceEE
Confidence 33321111111111 4556789999998 67777788999999999888643 4443332 2345999
Q ss_pred EEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 347 IKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 347 ~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
++|+|+|+|||+++ +|.|.|||+++
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999997 79999999985
No 106
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=3.3e-24 Score=171.84 Aligned_cols=220 Identities=13% Similarity=0.236 Sum_probs=177.7
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
++.+-|..|+|+ |++|++|+.||.|.+|+..+|+...-++.+....-...+..+ .++.|+.|...+
T Consensus 213 KSh~EcA~FSPD--gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aV-------lci~FSRDsEMl----- 278 (508)
T KOG0275|consen 213 KSHVECARFSPD--GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAV-------LCISFSRDSEML----- 278 (508)
T ss_pred ccchhheeeCCC--CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccce-------EEEeecccHHHh-----
Confidence 366889999765 889999999999999999999987777665544222223334 489999999987
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
++|+.||.|++|. + ..+.|.+.+..+|...|+++.|+.|+..+.++ .|.++++.-+. .+++++
T Consensus 279 -------AsGsqDGkIKvWr-i------~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LK- 342 (508)
T KOG0275|consen 279 -------ASGSQDGKIKVWR-I------ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLK- 342 (508)
T ss_pred -------hccCcCCcEEEEE-E------ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHH-
Confidence 9999999999999 4 45788888878999999999999999999998 89999999999 455543
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
.+.+|...|+...|.++| ..+++++.||+|++|+.++...+ .+|+.... .-+|+.+..-
T Consensus 343 ------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~~~~----------d~~vnsv~~~ 401 (508)
T KOG0275|consen 343 ------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKPLGT----------DYPVNSVILL 401 (508)
T ss_pred ------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccCCCC----------cccceeEEEc
Confidence 379999999999999999 99999999999999999988544 44443321 2578888888
Q ss_pred cC-CCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363 351 RN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 351 pd-g~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
|. ...++.+. .++|.+-++. |+.+++|..-..
T Consensus 402 PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkR 435 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKR 435 (508)
T ss_pred CCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCc
Confidence 84 45677775 4899999994 788888865443
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=175.64 Aligned_cols=247 Identities=15% Similarity=0.218 Sum_probs=172.5
Q ss_pred cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
....+.+.|+.++..|.. ...+|+.+..+.|.|||.....-.........+ +-.+.........++|++.....
T Consensus 119 ~~i~h~gEVnRaRymPQn-p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~P-----dl~L~gH~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQN-PNIVATKTSSGDVYVFDYTKHPSKPKASGECRP-----DLRLKGHEKEGYGLSWNRQQEGT 192 (422)
T ss_pred EeccCCccchhhhhCCCC-CcEEEecCCCCCEEEEEeccCCCcccccccCCC-----ceEEEeeccccccccccccccee
Confidence 334555779999999864 358888899999999998754322221111111 11111111223367787765543
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccccc-cccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-LVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI 263 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~ 263 (408)
+++++.|+.|.+|| +...... ....++.. ..+|...|..++|++-.. +|+++ +|+.+.|||+++
T Consensus 193 -----------Lls~~~d~~i~lwd-i~~~~~~~~~~~p~~~-~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 193 -----------LLSGSDDHTICLWD-INAESKEDKVVDPKTI-FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred -----------EeeccCCCcEEEEe-ccccccCCccccceEE-eecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 59999999999999 7664442 22333334 489999999999999764 55555 999999999995
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
...... ....+|...|.|++|+|.+..+||+|+.|++|.+||+|+.+. ++.++++| ...
T Consensus 260 ~~~~~~------~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H------------~de 318 (422)
T KOG0264|consen 260 NTSKPS------HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGH------------EDE 318 (422)
T ss_pred CCCCCc------ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCC------------Ccc
Confidence 211111 236789999999999999889999999999999999998753 45666666 478
Q ss_pred eEEEEEccCCC-EEEEe-CCCeEEEEECCCCCC----------ceeeeeecccccceEEecC
Q 015363 344 ISDIKFARNGR-HILSR-DYMTLKLWDINMDSG----------PVATFQVHEHLRPKVMHSS 393 (408)
Q Consensus 344 i~~~~~spdg~-~l~s~-~d~~v~~wd~~~~~~----------~~~~~~~~~~~~~~~~~~~ 393 (408)
|.+|.|||+.. .||++ .|+.+.+||+..-+. +...+..|.+++.++..+.
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS 380 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccccc
Confidence 99999999754 66665 589999999986433 2334556666666665543
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=4.2e-23 Score=189.99 Aligned_cols=264 Identities=16% Similarity=0.261 Sum_probs=184.1
Q ss_pred ccceEEEEECCCCCeEEEee--cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
...|.+++.+|||..+|||+ .||.++||+.+.-.. +.+..+.. -.+.+..+..|.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~~-----l~k~l~~m~~h~------------ 69 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNEN-----LPKHLCTMDDHD------------ 69 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhcc-----cchhheeecccc------------
Confidence 44699999999999999999 899999999763221 11000000 112344566677
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc------------------EEEEeccCCCCcccCCCCCeEeecCCc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------------------VKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (408)
+.|+|+.|+| ||++||+|++|+.|.+|+....- ....+..| ++.|
T Consensus 70 ~sv~CVR~S~--dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H--------~~DV------- 132 (942)
T KOG0973|consen 70 GSVNCVRFSP--DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH--------DSDV------- 132 (942)
T ss_pred CceeEEEECC--CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC--------CCcc-------
Confidence 7899999965 59999999999999999987410 11111221 1222
Q ss_pred eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC
Q 015363 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (408)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (408)
..++|+|++.++ ++++-|++|.+|+ ... ....+. +.+|...|..+.|+|-|++||+- +|
T Consensus 133 ~Dv~Wsp~~~~l------------vS~s~DnsViiwn-~~t------F~~~~v-l~~H~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 133 LDVNWSPDDSLL------------VSVSLDNSVIIWN-AKT------FELLKV-LRGHQSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred ceeccCCCccEE------------EEecccceEEEEc-ccc------ceeeee-eecccccccceEECCccCeeeeecCC
Confidence 379999999998 9999999999999 322 234444 38999999999999999999998 99
Q ss_pred CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC----CCeEEEEEcCCCceeccccccccccc
Q 015363 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSALCDTHSKLFEEQE 329 (408)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (408)
++|++|++...+- .+.+. +|..-......++.+.|+||| .+|++... -..+.|.+-.+.+.- +.|-||
T Consensus 193 rtikvwrt~dw~i-~k~It-~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~----~~LvGH- 264 (942)
T KOG0973|consen 193 RTLKVWRTSDWGI-EKSIT-KPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVD----KDLVGH- 264 (942)
T ss_pred ceEEEEEccccee-eEeec-cchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceee----eeeecC-
Confidence 9999999774322 22211 111111234557899999999 99988743 346777776555322 455555
Q ss_pred CCCCccccccccceeEEEEEccC-----CC------------EEEEeC-CCeEEEEECCCCCCceee
Q 015363 330 APGTRSFFTEIIASISDIKFARN-----GR------------HILSRD-YMTLKLWDINMDSGPVAT 378 (408)
Q Consensus 330 ~~~~~~~~~~h~~~i~~~~~spd-----g~------------~l~s~~-d~~v~~wd~~~~~~~~~~ 378 (408)
.+++.++.|+|. .+ .+|+|+ |++|.||..... +++..
T Consensus 265 -----------~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~v 319 (942)
T KOG0973|consen 265 -----------SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFV 319 (942)
T ss_pred -----------CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-Cchhh
Confidence 589999999981 11 455676 899999999763 55443
No 109
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.2e-23 Score=186.01 Aligned_cols=250 Identities=15% Similarity=0.224 Sum_probs=165.4
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCC-------------cccCC---CCCeEeec--C
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP-------------EKAAG---NGPIFGSH--V 172 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~---~~~v~~~~--~ 172 (408)
|++.|.++.|+++ |++||+|+.|+.|+||.+...+........... ..... .+...... .
T Consensus 266 h~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 266 HKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 4488999999755 999999999999999998773322111111000 00000 00000000 0
Q ss_pred Cceee-----EEccCCCeeecccccc---------cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEE
Q 015363 173 SAIPK-----SYMANGGCGERNFGCA---------SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238 (408)
Q Consensus 173 ~~~~~-----~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 238 (408)
...++ ++.-..+.+..+.||+ .+.++++++.|.+|++|+ + ....|++.| .|...|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh-~------~~~~CL~~F--~HndfVTc 414 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWH-P------GRKECLKVF--SHNDFVTC 414 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeec-C------CCcceeeEE--ecCCeeEE
Confidence 00000 0111112222333433 345689999999999999 4 336677776 89999999
Q ss_pred EEeCC-CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 239 ISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 239 i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
|+|+| |.++|++| -|+.|+||++. ..+... ...-..-|++++|.|+| +..+.|+.+|.+++|++...+
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred EEecccCCCcEeecccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCe
Confidence 99999 56899999 79999999998 444433 22334779999999999 999999999999999998776
Q ss_pred eecccccccccccCCCCccccccccceeEEEEEccCC--CEEEEeCCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVM 390 (408)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg--~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 390 (408)
... .+.-+..... -..| ..|+.+.|.|.. +.|+|..|..|+|+|.+. ..++..|+|+......+.
T Consensus 485 ~~~----~~~I~~~~~K---k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 485 LVS----DFHIRLHNKK---KKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQIS 551 (712)
T ss_pred EEE----eeeEeeccCc---cccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCccee
Confidence 541 1111100000 0112 279999999843 488888999999999986 689999998877755443
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=9.8e-23 Score=178.74 Aligned_cols=272 Identities=14% Similarity=0.176 Sum_probs=205.0
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+..+|..-|..+++.+.. .++++++||++++|+-..++.. ....+.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~--------- 57 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK--------- 57 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc---------
Confidence 345799999888877554 6999999999999997665431 223466666
Q ss_pred ccccceeE-EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 110 EIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 110 ~~~~~v~~-v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
+-|.. +++.+ .++-.+++|++|.+|.+|.+.+.....++..|... |. ++....++. +
T Consensus 58 ---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn--------VC-------~ls~~~~~~-~-- 115 (745)
T KOG0301|consen 58 ---GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN--------VC-------SLSIGEDGT-L-- 115 (745)
T ss_pred ---ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhhhccccc--------ee-------eeecCCcCc-e--
Confidence 34555 88866 44557999999999999999999888888887543 32 333344444 4
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
++|+.|.++++|. . +++... +.+|...|.+++.-|.+ .+++| .|.+|++|.-. ..
T Consensus 116 ----------iSgSWD~TakvW~-~--------~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~ 171 (745)
T KOG0301|consen 116 ----------ISGSWDSTAKVWR-I--------GELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TL 171 (745)
T ss_pred ----------EecccccceEEec-c--------hhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---ch
Confidence 9999999999998 3 223333 48999999999999988 77788 99999999864 33
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
.+ ++.+|.+.|+.+++-+++ .|+++++||.|++|++. +..+ ..+.+| +.-|.++
T Consensus 172 l~-------tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~-ge~l----~~~~gh------------tn~vYsi 225 (745)
T KOG0301|consen 172 LK-------TFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD-GEVL----LEMHGH------------TNFVYSI 225 (745)
T ss_pred hh-------hhccchhheeeeEEecCC--CeEeecCCceEEEEecc-Ccee----eeeecc------------ceEEEEE
Confidence 33 378999999999999986 68999999999999994 4333 555555 5789999
Q ss_pred EEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeee--eceeeec
Q 015363 348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGL--DNIHTLY 407 (408)
Q Consensus 348 ~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~ 407 (408)
+...++..++++ .|++++||+.. .+.+.+.-..-..-..+.+..+|++.. |.+.++|
T Consensus 226 s~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred EecCCCCeEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEE
Confidence 977777777776 57999999984 788888765555666666778887644 5555544
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.6e-24 Score=190.69 Aligned_cols=246 Identities=17% Similarity=0.253 Sum_probs=181.7
Q ss_pred ceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363 37 IISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 37 ~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (408)
.+..+.|+. +.++|||++..|.|.+||+.... .-+.++.|..|+ -.|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------------rnk~l~~f~EH~------------Rs~ 136 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------------RNKLLTVFNEHE------------RSA 136 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--------------------cchhhhHhhhhc------------cce
Confidence 345677775 47899999999999999987621 112355788888 779
Q ss_pred eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (408)
+++.|++... .+|++|+.||+|++||++..+....+..+. ..+. .+.|+|.....
T Consensus 137 ~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nS--------ESiR-------DV~fsp~~~~~--------- 191 (839)
T KOG0269|consen 137 NKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNS--------ESIR-------DVKFSPGYGNK--------- 191 (839)
T ss_pred eeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccc--------hhhh-------ceeeccCCCce---------
Confidence 9999998655 499999999999999999887666555532 2233 57787765433
Q ss_pred ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce-eeEeec
Q 015363 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDV 273 (408)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~ 273 (408)
++++...|.+.+|| ++.. .++...+ .+|.++|.++.|+|++.+||+| .|+.|+|||....... ...+
T Consensus 192 --F~s~~dsG~lqlWD-lRqp-----~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-- 260 (839)
T KOG0269|consen 192 --FASIHDSGYLQLWD-LRQP-----DRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-- 260 (839)
T ss_pred --EEEecCCceEEEee-ccCc-----hhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--
Confidence 48889999999999 6543 3344444 8999999999999999999999 9999999999844332 2211
Q ss_pred CCCcccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
....+|.+++|.|..+..||+++. |-.|+|||++..- .|..+ +..|...++.++|..
T Consensus 261 ------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t------------~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 261 ------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY---IPYAT------------FLEHTDSVTGIAWDS 319 (839)
T ss_pred ------eecceeeeeeeccCccchhhhhhccccceEEEEeecccc---cccee------------eeccCccccceeccC
Confidence 124678999999999788888865 8899999998653 22233 445568899999975
Q ss_pred -CCCEEEEeC-CCeEEEEECCC
Q 015363 352 -NGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 352 -dg~~l~s~~-d~~v~~wd~~~ 371 (408)
|-..|.+++ |++|..-.+++
T Consensus 320 ~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred CCceeeEeecCccHHHHhhhhc
Confidence 344556665 67776665554
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=183.18 Aligned_cols=237 Identities=17% Similarity=0.239 Sum_probs=182.5
Q ss_pred cccCcccceeeecccCcCc---ccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccC
Q 015363 10 AAAQPLEWKFSQVFGERTA---GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSR 86 (408)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~---~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 86 (408)
..+.-..|++.+-.++... .....|.++|+.++...+|+.|+++|.|-+|++|+......
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~----------------- 107 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT----------------- 107 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-----------------
Confidence 3355677888876554322 23446999999999999999999999999999999775531
Q ss_pred CCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcc---cCC
Q 015363 87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK---AAG 163 (408)
Q Consensus 87 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~ 163 (408)
-++..+..|. +.|.|+++- .++..++|+|+-|+.|.+||++++....+...+..... ..+
T Consensus 108 ----~c~stir~H~------------DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 108 ----FCMSTIRTHK------------DYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ----hhHhhhhccc------------chheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 1345677787 789999983 34567999999999999999998844222222222211 123
Q ss_pred CCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC
Q 015363 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (408)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 243 (408)
..+++ +++.+++|..+ ++|+..+.+++|| .+.... +-. +.+|...|+.+..++
T Consensus 171 k~siY-------SLA~N~t~t~i------------vsGgtek~lr~wD-prt~~k------imk-LrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 171 KDSIY-------SLAMNQTGTII------------VSGGTEKDLRLWD-PRTCKK------IMK-LRGHTDNVRVLLVND 223 (735)
T ss_pred cccee-------eeecCCcceEE------------EecCcccceEEec-cccccc------eee-eeccccceEEEEEcC
Confidence 34455 77888888776 9999999999999 432111 112 479999999999999
Q ss_pred CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
||+.++++ +||+|++||+. .+.++.. +..|...|+++..+|+- ..+++|+.||.|..=|+++..
T Consensus 224 DGt~~ls~sSDgtIrlWdLg-qQrCl~T-------~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLG-QQRCLAT-------YIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred CCCeEeecCCCceEEeeecc-ccceeee-------EEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCch
Confidence 99999999 99999999999 5566654 56789999999999999 999999999999999999854
No 113
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=161.71 Aligned_cols=260 Identities=15% Similarity=0.246 Sum_probs=173.0
Q ss_pred eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (408)
Q Consensus 38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (408)
-.|+.|++-|.+||+|+.||.|.|||+.+... ...+.+|. -+|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------------ar~lsaH~------------~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------------ARMLSAHV------------RPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-----------------------hhhhhccc------------cceeE
Confidence 68999999999999999999999999987652 35678888 78999
Q ss_pred EEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC--eeecccccccC
Q 015363 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG--CGERNFGCASN 195 (408)
Q Consensus 118 v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ 195 (408)
++|+++ |.+|++++.|..|.+||+..+.+...+.+. .+|+ ...|+|... ++.++-.....
T Consensus 71 l~WS~d--gr~LltsS~D~si~lwDl~~gs~l~rirf~---------spv~-------~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 71 LCWSRD--GRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---------SPVW-------GAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred EEecCC--CCEeeeecCCceeEEEeccCCCceeEEEcc---------Cccc-------eeeeccccCCeEEEEEecCCcE
Confidence 999755 999999999999999999999887776663 2344 445665433 22111111111
Q ss_pred ccccCCCCCceeeeceeeeccccccccccceeecccc-ccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (408)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (408)
.+.++. +.-.+ ...-..+. +....+..|++.|+++++| ..|.+.++|..+. ++...+++
T Consensus 133 vi~~s~---~~h~~---------------Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~ri 193 (405)
T KOG1273|consen 133 VIDFSD---PKHSV---------------LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRI 193 (405)
T ss_pred EEEecC---Cceee---------------ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-eeeeeeee
Confidence 001110 00000 00000000 0111223688999999999 9999999999944 44443221
Q ss_pred CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc--cceeEEEEEcc
Q 015363 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI--IASISDIKFAR 351 (408)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~sp 351 (408)
.. ...|.++.++..| +.|+.-+.|+.|+.|+++.--.+.+....-..| .++.- ...=.+++||.
T Consensus 194 -----ts-~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~-------K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 194 -----TS-VQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH-------KLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred -----ch-heeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhH-------HHHHHHhhhhhhheeecC
Confidence 11 3568899999999 999999999999999987321110000000001 01000 01235678999
Q ss_pred CCCEEEEeC-C-CeEEEEECCCCCCceeeeeeccc
Q 015363 352 NGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 352 dg~~l~s~~-d-~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
+|.|+++++ . ..++||.... |.+++.+.|..+
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~-GsLVKILhG~kg 293 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSI-GSLVKILHGTKG 293 (405)
T ss_pred CccEEEeccccceeEEEEecCC-cceeeeecCCch
Confidence 999999985 3 8999999998 899999998774
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.8e-23 Score=163.58 Aligned_cols=272 Identities=14% Similarity=0.184 Sum_probs=196.8
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCc--------ccccccccc-------cc-cCCCcc-cee
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQ--------RRDLEMMDY-------SM-SRHPEF-RYK 93 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~--------~~~~~~~~~-------~~-~~~p~~-~~~ 93 (408)
-.+|.+.|+||+|++.+.++++++.|++..||...-+-..+.. ..+++..+. .. ...|.. ..+
T Consensus 186 Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl 265 (481)
T KOG0300|consen 186 YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPL 265 (481)
T ss_pred ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeee
Confidence 3579999999999999999999999999999984322111110 001111111 00 011122 235
Q ss_pred eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (408)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (408)
..+.+|. +.|.+..|... |+.+++++.|++..+||+++++.+..+.++..+- .
T Consensus 266 ~~ltgH~------------~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL--------t----- 318 (481)
T KOG0300|consen 266 MRLTGHR------------AVVSACDWLAG--GQQMVTASWDRTANLWDVETGEVVNILTGHDSEL--------T----- 318 (481)
T ss_pred eeeeccc------------cceEehhhhcC--cceeeeeeccccceeeeeccCceeccccCcchhc--------c-----
Confidence 5677887 77999999754 8899999999999999999999999888876541 1
Q ss_pred ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c
Q 015363 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (408)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (408)
-++-+|+.+++ ++.+.|.++++|| ++. ....+.. +++|...|+++.|.-+.+ +++| +
T Consensus 319 --HcstHptQrLV------------vTsSrDtTFRLWD-FRe-----aI~sV~V-FQGHtdtVTS~vF~~dd~-vVSgSD 376 (481)
T KOG0300|consen 319 --HCSTHPTQRLV------------VTSSRDTTFRLWD-FRE-----AIQSVAV-FQGHTDTVTSVVFNTDDR-VVSGSD 376 (481)
T ss_pred --ccccCCcceEE------------EEeccCceeEecc-chh-----hcceeee-ecccccceeEEEEecCCc-eeecCC
Confidence 34566666665 9999999999999 542 1222333 489999999999987765 5666 9
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (408)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (408)
|.+|++||++.....+..+. ...++..++.+..+ .++|.-..+..|++||+....+..-|-..-
T Consensus 377 DrTvKvWdLrNMRsplATIR--------tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsR------- 440 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIR--------TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSR------- 440 (481)
T ss_pred CceEEEeeeccccCcceeee--------cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccc-------
Confidence 99999999998877776543 25678899999887 899999889999999998765432222222
Q ss_pred CccccccccceeEEEEEccCC--CEEEEe-CCCeEEEEECCCC
Q 015363 333 TRSFFTEIIASISDIKFARNG--RHILSR-DYMTLKLWDINMD 372 (408)
Q Consensus 333 ~~~~~~~h~~~i~~~~~spdg--~~l~s~-~d~~v~~wd~~~~ 372 (408)
++|...|.|++|..+- .-|+++ -|..+.-|+++.+
T Consensus 441 -----qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 441 -----QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred -----cccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 4556889999998642 345555 5899999999763
No 115
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=169.54 Aligned_cols=267 Identities=15% Similarity=0.227 Sum_probs=184.2
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-.+.|++|.|+|...+|++|+.||+++||.+++.... .++.+.-.. .
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------f 258 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------F 258 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------C
Confidence 3578999999999999999999999999999877542 223332222 6
Q ss_pred ceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcc------cCCCCCeEe----------ec-----
Q 015363 114 KINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK------AAGNGPIFG----------SH----- 171 (408)
Q Consensus 114 ~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~v~~----------~~----- 171 (408)
+|.+.+|.|. |+ .+++++....++.||+.+.+..++......+.. ..+.+.+.+ ..
T Consensus 259 Pi~~a~f~p~--G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 259 PIQKAEFAPN--GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred ccceeeecCC--CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 7999999764 77 889999999999999998776555443332210 111121111 11
Q ss_pred --------CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC
Q 015363 172 --------VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (408)
Q Consensus 172 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 243 (408)
.....++|+.+++.+ ++.+.+|.|.+|| +... .+.+.+.....-.-++++.++
T Consensus 337 li~s~KieG~v~~~~fsSdsk~l------------~~~~~~GeV~v~n-l~~~------~~~~rf~D~G~v~gts~~~S~ 397 (514)
T KOG2055|consen 337 LITSFKIEGVVSDFTFSSDSKEL------------LASGGTGEVYVWN-LRQN------SCLHRFVDDGSVHGTSLCISL 397 (514)
T ss_pred hhheeeeccEEeeEEEecCCcEE------------EEEcCCceEEEEe-cCCc------ceEEEEeecCccceeeeeecC
Confidence 011245666677666 7788889999999 5442 445554333233456788889
Q ss_pred CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcCCCceecc
Q 015363 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDT 320 (408)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~ 320 (408)
++.+||+| +.|.|.|||.++........++ .++......|++|+|+|+. ++||.++. +..+++-.+.+....
T Consensus 398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPi--k~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVF-- 472 (514)
T KOG2055|consen 398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPI--KTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVF-- 472 (514)
T ss_pred CCceEEeccCcceEEEeccchhhccCCCCch--hhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeee--
Confidence 99999999 8999999997632211111000 2245566789999999999 99988876 678999888765432
Q ss_pred cccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECC
Q 015363 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (408)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~ 370 (408)
.-++... .-.+.|+|++|||.|-+||.|.+ |.|.+|.+.
T Consensus 473 --sNfP~~n---------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 --SNFPTSN---------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --ccCCCCC---------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 2222221 11367999999999999999975 999999884
No 116
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-21 Score=168.89 Aligned_cols=250 Identities=15% Similarity=0.230 Sum_probs=189.5
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
..+|.|+||+.+.+.||.+-.+|.|.||++..+ +-+...+.+++. ..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~----------------------w~~~~vi~g~~d-----------rs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN----------------------WFLEPVIHGPED-----------RS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC----------------------ceeeEEEecCCC-----------Cc
Confidence 578999999999999999999999999998754 224455666653 77
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
|.+++|++ +..|++.+.+|.|.-||+.+.+.+...... .+.++ +++.+|.+..+
T Consensus 72 IE~L~W~e---~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~--------gg~IW-------siai~p~~~~l-------- 125 (691)
T KOG2048|consen 72 IESLAWAE---GGRLFSSGLSGSITEWDLHTLKQKYNIDSN--------GGAIW-------SIAINPENTIL-------- 125 (691)
T ss_pred eeeEEEcc---CCeEEeecCCceEEEEecccCceeEEecCC--------Cccee-------EEEeCCccceE--------
Confidence 99999963 458999999999999999999887766654 34577 68888888876
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (408)
+.|..||.+..++ ....... ..+. +....++|.+++|+|++..+++| .||.|++||..... ...++..
T Consensus 126 ----~IgcddGvl~~~s-~~p~~I~----~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~ 194 (691)
T KOG2048|consen 126 ----AIGCDDGVLYDFS-IGPDKIT----YKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ-TLHIITM 194 (691)
T ss_pred ----EeecCCceEEEEe-cCCceEE----EEee-cccccceEEEEEecCCccEEEecccCceEEEEEcCCCc-eEEEeee
Confidence 8888999666555 2221111 1111 24456899999999999999999 99999999999444 4444433
Q ss_pred CCCcccC-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 274 KPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 274 ~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
...++.. ...-|+++.|-.++ .+++|...|+|.+||...+.+. +.+..| .+.|.+++..++
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLi----qS~~~h------------~adVl~Lav~~~ 256 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLI----QSHSCH------------DADVLALAVADN 256 (691)
T ss_pred cccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchh----hhhhhh------------hcceeEEEEcCC
Confidence 3233333 34457888888776 8999999999999999998765 555555 477999999999
Q ss_pred CCEEEEeC-CCeEEEEECCCC
Q 015363 353 GRHILSRD-YMTLKLWDINMD 372 (408)
Q Consensus 353 g~~l~s~~-d~~v~~wd~~~~ 372 (408)
+.++++++ |+.|..+...+.
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CCeEEEccCCCceEEEEecCC
Confidence 88888875 888888877764
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.9e-22 Score=158.34 Aligned_cols=235 Identities=17% Similarity=0.255 Sum_probs=172.4
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
....|..+|.+++|.++. .+++|+.||.|+++|+.++.. ..+..|.
T Consensus 49 ~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~------------------------~~igth~--------- 94 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNE------------------------DQIGTHD--------- 94 (323)
T ss_pred hheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcc------------------------eeeccCC---------
Confidence 346799999999998754 599999999999999998864 2466677
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.+|.||.+++. ...+++|+.|++|++||.++......... ...|+ +.+-.|..|
T Consensus 95 ---~~i~ci~~~~~--~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---------~kkVy---------~~~v~g~~L--- 148 (323)
T KOG1036|consen 95 ---EGIRCIEYSYE--VGCVISGSWDKTIKFWDPRNKVVVGTFDQ---------GKKVY---------CMDVSGNRL--- 148 (323)
T ss_pred ---CceEEEEeecc--CCeEEEcccCccEEEEecccccccccccc---------CceEE---------EEeccCCEE---
Confidence 88999999865 34899999999999999987433222221 11233 333445554
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc-e
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-S 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~ 267 (408)
+.|..+..+.+|| +++.+....... ..-...+++|++-|++.-++++ -||+|.+=.++.... .
T Consensus 149 ---------vVg~~~r~v~iyD-LRn~~~~~q~re-----S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 149 ---------VVGTSDRKVLIYD-LRNLDEPFQRRE-----SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred ---------EEeecCceEEEEE-cccccchhhhcc-----ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 8899999999999 776554332211 2334678999999988777777 899998866664311 1
Q ss_pred eeEeecCCCcccCCc---------CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363 268 FNIVDVKPANMEDLT---------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (408)
.+.+ .+..|. -+|.+|+|+|-. ..||+|+.||.|.+||+.+.+.+ +.+...+
T Consensus 214 skky-----aFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKrl----~q~~~~~--------- 274 (323)
T KOG1036|consen 214 SKKY-----AFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKRL----KQLAKYE--------- 274 (323)
T ss_pred hhce-----eEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhhh----hhccCCC---------
Confidence 1111 123332 468899999998 89999999999999999988654 5555542
Q ss_pred cccceeEEEEEccCCCEEEEeCC
Q 015363 339 EIIASISDIKFARNGRHILSRDY 361 (408)
Q Consensus 339 ~h~~~i~~~~~spdg~~l~s~~d 361 (408)
..|..++|+.||..||.+++
T Consensus 275 ---~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 ---TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ---CceEEEEeccCCCeEEEEec
Confidence 57999999999999998843
No 118
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.4e-24 Score=187.95 Aligned_cols=235 Identities=21% Similarity=0.360 Sum_probs=192.5
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+...|...|.|+..-..++.+++|+.|-.+-||.+..... +..|.+|+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-----------------------i~S~~~he--------- 70 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-----------------------ITSLTGHE--------- 70 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-----------------------hheeeccC---------
Confidence 3467999999999977899999999999999999865542 34588998
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.+|.++.|.+. ..+|++|+.+|+|++||+++.+....+..+..+ + +.+.|+|-+.+.
T Consensus 71 ---spIeSl~f~~~--E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------~-------~sv~f~P~~~~~--- 127 (825)
T KOG0267|consen 71 ---SPIESLTFDTS--ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------I-------TSVDFHPYGEFF--- 127 (825)
T ss_pred ---CcceeeecCcc--hhhhcccccCCceeeeehhhhhhhhhhhccccC--------c-------ceeeeccceEEe---
Confidence 88999999754 558899999999999999988877766665432 1 267899999986
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
++++.|..+++|| .+. ..|.+.+ .+|...+..+.|+|+|++++.+ +|..+++||... ++..
T Consensus 128 ---------a~gStdtd~~iwD-~Rk------~Gc~~~~-~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~ 189 (825)
T KOG0267|consen 128 ---------ASGSTDTDLKIWD-IRK------KGCSHTY-KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLS 189 (825)
T ss_pred ---------ccccccccceehh-hhc------cCceeee-cCCcceeEEEeecCCCceeeccCCcceeeeecccc-cccc
Confidence 8999999999999 432 4456665 6788999999999999999999 899999999984 4443
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
. .+..|...+..+.|+|.. .++++|+.|+++++||+++...+ ...... ...|.+++
T Consensus 190 ~-------ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I----~s~~~~------------~~~v~~~~ 245 (825)
T KOG0267|consen 190 K-------EFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVI----SSGKPE------------TDGVRSLA 245 (825)
T ss_pred c-------ccccccccccccccCchh-hhhccCCCCceeeeeccceeEEe----eccCCc------------cCCceeee
Confidence 2 378899999999999999 99999999999999999987554 122111 26799999
Q ss_pred EccCCCEEEEeCC
Q 015363 349 FARNGRHILSRDY 361 (408)
Q Consensus 349 ~spdg~~l~s~~d 361 (408)
|+|+++.+++|..
T Consensus 246 fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 246 FNPDGKIVLSGEQ 258 (825)
T ss_pred ecCCceeeecCch
Confidence 9999999999853
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1e-22 Score=172.39 Aligned_cols=282 Identities=15% Similarity=0.237 Sum_probs=205.1
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
.+.|..-|-++.+|...++++||+. |.|+|||+...... .+ +.. +..+.
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k----~P----------------vsq----------Ldcl~ 463 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK----SP----------------VSQ----------LDCLN 463 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC----Cc----------------ccc----------ccccC
Confidence 4579899999999999999999986 58999999765321 11 111 11222
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
....|.+...+|+ |..|++|+.-.++.|||+.........+.... .-.+.+++.+||.+..
T Consensus 464 rdnyiRSckL~pd--grtLivGGeastlsiWDLAapTprikaeltss-------------apaCyALa~spDakvc---- 524 (705)
T KOG0639|consen 464 RDNYIRSCKLLPD--GRTLIVGGEASTLSIWDLAAPTPRIKAELTSS-------------APACYALAISPDAKVC---- 524 (705)
T ss_pred cccceeeeEecCC--CceEEeccccceeeeeeccCCCcchhhhcCCc-------------chhhhhhhcCCcccee----
Confidence 2256888888654 88999999999999999987654332222211 1111257889999887
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
|++..||.|.+|| +.+. ..++. +.+|...+.||.+++||..|-+| -|.+|+.||+++..+..+
T Consensus 525 --------FsccsdGnI~vwD-Lhnq------~~Vrq-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 525 --------FSCCSDGNIAVWD-LHNQ------TLVRQ-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred --------eeeccCCcEEEEE-cccc------eeeec-ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 9999999999999 6553 23334 48999999999999999999999 899999999997665543
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
......|.++.++|++ .+++.|-.++.+.+........ +.+..| .+.|.++.|
T Consensus 589 ---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yqlhlh------------eScVLSlKF 641 (705)
T KOG0639|consen 589 ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQLHLH------------ESCVLSLKF 641 (705)
T ss_pred ---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eeeccc------------ccEEEEEEe
Confidence 1235779999999999 9999999999998887765432 344444 478999999
Q ss_pred ccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCe-ee---eeeceeeecC
Q 015363 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY-FM---GLDNIHTLYE 408 (408)
Q Consensus 350 spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~d~~~~~~~ 408 (408)
++.|+++++. -|+.+..|.... |..+...+ +...-..|+...++ +| .-|+--++||
T Consensus 642 a~cGkwfvStGkDnlLnawrtPy-GasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPY-GASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred cccCceeeecCchhhhhhccCcc-ccceeecc--ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 9999999986 589999999986 55444433 33333333444444 33 2366677776
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=3.2e-22 Score=176.23 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=213.8
Q ss_pred CcccceeeecccCcCcccceeeccceEEEEECCC-----------CCeEEEeecCCeEEEEEeCCCCCCCCccc-ccccc
Q 015363 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-----------GDHLATGDRGGRVVLFERTDTRDNGGQRR-DLEMM 80 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-----------~~~l~sg~~dg~i~iw~~~~~~~~~~~~~-~~~~~ 80 (408)
..+.|+....-.-...-..+-|...|+.+.--|- ..-+.|++.|++|++|+++........++ .+...
T Consensus 347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 3466777765332334456789999999876651 12488999999999999987443211111 11111
Q ss_pred cccccCC-CccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc
Q 015363 81 DYSMSRH-PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE 159 (408)
Q Consensus 81 ~~~~~~~-p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 159 (408)
-..+... .+...+..-...-.+-....++.-.-.+.+++.+|+ |++||+|..-|++++|++.+-+.....+.|..+
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE- 503 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRVYDLQELEYTCFMEAHESE- 503 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEEEEehhhhhhhheecccce-
Confidence 1111100 011111000000000111122244467999999755 999999999999999999988777666665433
Q ss_pred ccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEE
Q 015363 160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI 239 (408)
Q Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 239 (408)
|. ++.++.... ...++++++.|+-|++|| +.+.- ...++ +.+|...|+++
T Consensus 504 -------il-------cLeyS~p~~---------~~kLLASasrdRlIHV~D-v~rny-----~l~qt-ld~HSssITsv 553 (1080)
T KOG1408|consen 504 -------IL-------CLEYSFPVL---------TNKLLASASRDRLIHVYD-VKRNY-----DLVQT-LDGHSSSITSV 553 (1080)
T ss_pred -------eE-------EEeecCchh---------hhHhhhhccCCceEEEEe-ccccc-----chhhh-hcccccceeEE
Confidence 33 455543211 012359999999999999 54321 12223 48999999999
Q ss_pred EeCCCC--CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 240 SNNSDG--ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 240 ~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
.|...| ..++++ .|..|.+--.+... .-.++. ..+-.-....++.|+..|.. .++++++.|..|+|||+.+++
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~--r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFP--RHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhcccc-Cceecc--ccccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccc
Confidence 998877 566666 78877543322111 111110 01111124568899999999 999999999999999999998
Q ss_pred eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVM 390 (408)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 390 (408)
.. +.|++. .+|.+....+...|.|-|||+. +|.++.++|+-+ |+++.++.||......+.
T Consensus 630 q~----k~FKgs---------~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-gEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 630 QV----KSFKGS---------RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-GECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred ee----eeeccc---------ccCCCceEEEEECCCccEEEEeecCCceEEEEecc-chhhhhhcCcchheeeee
Confidence 76 777765 3445778889999999999986 799999999998 899999999999877664
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=2.8e-22 Score=176.57 Aligned_cols=256 Identities=17% Similarity=0.301 Sum_probs=188.3
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+...-...|.|++.+|+|++||+|..-|+++||++...+ +...+.+|+
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-----------------------~~~~~eAHe--------- 501 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-----------------------YTCFMEAHE--------- 501 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-----------------------hhhheeccc---------
Confidence 334566789999999999999999999999999987554 456788898
Q ss_pred ccccceeEEEEee-cCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 110 EIEEKINKIRWCQ-SANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 110 ~~~~~v~~v~~~p-~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
+.|.|+.|+. .-..++||++++|+.|.++|+... ...+.+..|. ..|. ++.|..+|...+
T Consensus 502 ---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS--------ssIT-------svKFa~~gln~~ 563 (1080)
T KOG1408|consen 502 ---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS--------SSIT-------SVKFACNGLNRK 563 (1080)
T ss_pred ---ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc--------ccee-------EEEEeecCCceE
Confidence 6699999972 222468999999999999999754 3344443332 1233 677777773222
Q ss_pred cccccccCccccCCCCCceeeeceeeec-cccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (408)
.++++.|+.|.+-. ... ...... +.... .-....++.+++.|...+++++ .|..|+|||++.++
T Consensus 564 ----------MiscGADksimFr~-~qk~~~g~~f--~r~t~-t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 564 ----------MISCGADKSIMFRV-NQKASSGRLF--PRHTQ-TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred ----------EEeccCchhhheeh-hccccCceec--ccccc-ccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 27778887765421 110 011100 00000 1123568899999999999998 99999999999555
Q ss_pred ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (408)
+. +.+ ..-.+|.+..-.+...|.| .++|+.+.|.++.++|+-+++.+ ..+.+| +..|+
T Consensus 630 q~-k~F----Kgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcv----A~m~GH------------sE~VT 687 (1080)
T KOG1408|consen 630 QV-KSF----KGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECV----AQMTGH------------SEAVT 687 (1080)
T ss_pred ee-eee----cccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhh----hhhcCc------------chhee
Confidence 44 332 1245677788899999999 99999999999999999999655 555555 68899
Q ss_pred EEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363 346 DIKFARNGRHILSR-DYMTLKLWDINM 371 (408)
Q Consensus 346 ~~~~spdg~~l~s~-~d~~v~~wd~~~ 371 (408)
.+.|++|-+.|++. +||.|.+|.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 99999999999997 589999999974
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=5.3e-22 Score=174.21 Aligned_cols=235 Identities=12% Similarity=0.254 Sum_probs=184.9
Q ss_pred ceeeccceEE-EEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 31 EVQEVDIISA-IEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 31 ~~~h~~~V~~-~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
..+|.+.|.+ +++-+ ++-.|++|+.|.+|.+|...+.. .+..+.+|+
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-----------------------P~~~LkgH~-------- 101 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-----------------------PLYTLKGHK-------- 101 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCC-----------------------chhhhhccc--------
Confidence 3457888887 88876 44569999999999999988765 356789999
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
+.|.++... .++ .+++|+.|.++++|.... +......| ...|+ ++...|++.+
T Consensus 102 ----snVC~ls~~--~~~-~~iSgSWD~TakvW~~~~--l~~~l~gH--------~asVW-------Av~~l~e~~~--- 154 (745)
T KOG0301|consen 102 ----SNVCSLSIG--EDG-TLISGSWDSTAKVWRIGE--LVYSLQGH--------TASVW-------AVASLPENTY--- 154 (745)
T ss_pred ----cceeeeecC--CcC-ceEecccccceEEecchh--hhcccCCc--------chhee-------eeeecCCCcE---
Confidence 789999873 445 489999999999997653 33334444 23466 5677777754
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCcee
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 268 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~ 268 (408)
++|+.|..|++|. - .++.+++ .+|...|+.+++-+++.++-++.||.|++|++. ++...
T Consensus 155 ----------vTgsaDKtIklWk-~--------~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge~l~ 213 (745)
T KOG0301|consen 155 ----------VTGSADKTIKLWK-G--------GTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GEVLL 213 (745)
T ss_pred ----------EeccCcceeeecc-C--------Cchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEecc-Cceee
Confidence 8999999999998 1 3445555 899999999999988776666699999999996 55444
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
. +.+|...|++++..+++ ..+++++.|++++||+... |. +.+..+ ...|++++
T Consensus 214 ~--------~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e---~~---q~I~lP------------ttsiWsa~ 266 (745)
T KOG0301|consen 214 E--------MHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDE---CV---QVITLP------------TTSIWSAK 266 (745)
T ss_pred e--------eeccceEEEEEEecCCC-CeEEEecCCceEEEeecCc---eE---EEEecC------------ccceEEEE
Confidence 3 67899999999977777 7999999999999999872 21 333333 24799999
Q ss_pred EccCCCEEEEeCCCeEEEEECCC
Q 015363 349 FARNGRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 349 ~spdg~~l~s~~d~~v~~wd~~~ 371 (408)
+-++|..++.|+||.|++|..+.
T Consensus 267 ~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeeCCCEEEeccCceEEEEEecc
Confidence 99999999999999999998874
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.9e-22 Score=154.46 Aligned_cols=224 Identities=15% Similarity=0.213 Sum_probs=161.4
Q ss_pred cceeeccceEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363 30 EEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (408)
+..+|.++|+.++|.. -|.+||++++||.|.||...+++. .....+..|.
T Consensus 51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w---------------------~k~~e~~~h~------- 102 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW---------------------TKAYEHAAHS------- 102 (299)
T ss_pred EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch---------------------hhhhhhhhhc-------
Confidence 5668999999999976 699999999999999999887753 2345567777
Q ss_pred ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC---C
Q 015363 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN---G 183 (408)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~ 183 (408)
..|++|+|.|+.-|-.|++++.||.|.|.+.++. ..........++ ....+++|.|. |
T Consensus 103 -----~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~-------------~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 103 -----ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE-------------IGVNSVSWAPASAPG 164 (299)
T ss_pred -----ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-------------cccceeeecCcCCCc
Confidence 7899999999887888999999999999998764 221111111111 11115677665 3
Q ss_pred CeeecccccccC-ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC----CEEEEe-cCCeEE
Q 015363 184 GCGERNFGCASN-DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----ETFISA-DDLRIN 257 (408)
Q Consensus 184 ~~l~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~-~d~~i~ 257 (408)
..+. .+.... .-+++|+.|..|++|+ .... .....+. +.+|.+.|+.++|.|.- .++|++ .||+|.
T Consensus 165 ~~~~--~~~~~~~krlvSgGcDn~VkiW~-~~~~----~w~~e~~-l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 165 SLVD--QGPAAKVKRLVSGGCDNLVKIWK-FDSD----SWKLERT-LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred cccc--cCcccccceeeccCCccceeeee-cCCc----chhhhhh-hhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 2210 001111 1269999999999999 4332 1222233 48999999999999974 578888 999999
Q ss_pred EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
||-.+......+. .-+......+..++|++.| ++|+.++.|..|.+|.-.
T Consensus 237 Iwt~~~e~e~wk~-----tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKK-----TLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCcccc-----cccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeC
Confidence 9988743333222 1144456789999999999 999999999999999654
No 124
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=4e-21 Score=150.13 Aligned_cols=224 Identities=16% Similarity=0.228 Sum_probs=176.7
Q ss_pred eeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCc
Q 015363 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (408)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (408)
.+++|+ .+++.|.++ .+|.+|++|+.|.+..+|-..+++.+.....| .|.|+
T Consensus 5 ~l~GHE------------RplTqiKyN--~eGDLlFscaKD~~~~vw~s~nGerlGty~GH--------tGavW------ 56 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKYN--REGDLLFSCAKDSTPTVWYSLNGERLGTYDGH--------TGAVW------ 56 (327)
T ss_pred ccccCc------------cccceEEec--CCCcEEEEecCCCCceEEEecCCceeeeecCC--------CceEE------
Confidence 478888 889999995 56889999999999999999999999988887 45677
Q ss_pred eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c-
Q 015363 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D- 252 (408)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~- 252 (408)
++....+.+.+ ++|+.|.++++|| +.. ++++..+ .....|..+.|+++|++++.. +
T Consensus 57 -~~Did~~s~~l------------iTGSAD~t~kLWD-v~t------Gk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 57 -CCDIDWDSKHL------------ITGSADQTAKLWD-VET------GKQLATW--KTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred -EEEecCCccee------------eeccccceeEEEE-cCC------CcEEEEe--ecCCeeEEEeeccCCcEEEEEehh
Confidence 66777777777 9999999999999 543 3333332 334679999999999988765 2
Q ss_pred ----CCeEEEEeCCCCC------ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363 253 ----DLRINLWNLEISN------QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (408)
Q Consensus 253 ----d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 322 (408)
.+.|.++|++... .++.. +..+...++.+-|.|.+ ..|++|..||.|.+||++++....
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~k-------I~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v--- 183 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDSEEPYLK-------IPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELV--- 183 (327)
T ss_pred hcCcceEEEEEEccCChhhhcccCceEE-------ecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceee---
Confidence 4689999998432 11221 45567889999999999 999999999999999999986431
Q ss_pred cccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEec
Q 015363 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHS 392 (408)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (408)
..-+. |...|+++.++||..++++++ |.+-++||+.+ -.+++++....-+.....++
T Consensus 184 ~s~~~------------h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~PvN~aaisP 241 (327)
T KOG0643|consen 184 DSDEE------------HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERPVNTAAISP 241 (327)
T ss_pred echhh------------hccccccccccCCcceEEecccCccceeeeccc-eeeEEEeeecccccceeccc
Confidence 33333 457899999999999999997 79999999998 68888887655444444333
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.6e-20 Score=161.51 Aligned_cols=255 Identities=7% Similarity=0.076 Sum_probs=166.5
Q ss_pred ccceEEEEECCCCCeE-EEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
...+.+++|+|+++.+ ++++.++.|++||..+++. ...+..+.
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------- 73 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----------------------IGTLPSGP------------- 73 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----------------------EEeccCCC-------------
Confidence 3447789999999876 6677889999999876642 12233222
Q ss_pred ceeEEEEeecCCCcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 114 KINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
.+..++|+|+ ++.++++ ..|+.+++||+.+.+....+..... +..+.++|+|+.+
T Consensus 74 ~~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~dg~~l------ 129 (300)
T TIGR03866 74 DPELFALHPN--GKILYIANEDDNLVTVIDIETRKVLAEIPVGVE----------------PEGMAVSPDGKIV------ 129 (300)
T ss_pred CccEEEECCC--CCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC----------------cceEEECCCCCEE------
Confidence 2556788654 6666554 5789999999998776554432211 1158899999987
Q ss_pred ccCccccCCCCCc-eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEEeCCCCCceee
Q 015363 193 ASNDSSFPPGGVS-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 193 ~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~ 269 (408)
+++..++ .+..|| .... ...... .....+..++|+|+++.|+. + .++.|.+||+++. +...
T Consensus 130 ------~~~~~~~~~~~~~d-~~~~------~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~ 193 (300)
T TIGR03866 130 ------VNTSETTNMAHFID-TKTY------EIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIK 193 (300)
T ss_pred ------EEEecCCCeEEEEe-CCCC------eEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeee
Confidence 5555543 456667 3221 111111 11234567899999998865 4 6999999999844 3333
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCce-EEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNM-LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
.+................++|+|++ ++ +++.+.++.|.+||+++++.. ..+... ..+.+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~~-------------~~~~~~~ 255 (300)
T TIGR03866 194 KITFEIPGVHPEAVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVL----DYLLVG-------------QRVWQLA 255 (300)
T ss_pred eeeecccccccccCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEE----EEEEeC-------------CCcceEE
Confidence 3221110011111223568999999 55 444556778999999887543 222111 3588999
Q ss_pred EccCCCEEEEe-C-CCeEEEEECCCCCCceeeeeeccc
Q 015363 349 FARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 349 ~spdg~~l~s~-~-d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
|+|+|++|+++ . ++.|++||+++ ++++..++....
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~ 292 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAA-LKVIKSIKVGRL 292 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEEcccc
Confidence 99999999886 4 59999999997 788888876543
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=7.6e-22 Score=170.46 Aligned_cols=284 Identities=18% Similarity=0.239 Sum_probs=187.9
Q ss_pred ecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCC
Q 015363 21 QVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (408)
Q Consensus 21 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 100 (408)
+.|.........+|++.|.||...|.|.+||+|+.||+|+||.+.++.+. ..++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----------------------r~~~--- 439 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----------------------RTVQ--- 439 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------EEEe---
Confidence 33555555567789999999999999999999999999999999998752 2221
Q ss_pred cccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE------e-ccC--CCC----cccC-----
Q 015363 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV------F-DWN--VHP----EKAA----- 162 (408)
Q Consensus 101 ~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~------~-~~~--~~~----~~~~----- 162 (408)
..+.|.||+|+|.++-..||++-... +.+-+..-|..+.. + ... ..+ ....
T Consensus 440 ----------~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~ 508 (733)
T KOG0650|consen 440 ----------FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLD 508 (733)
T ss_pred ----------ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhh
Confidence 11459999999987765565554444 66655443311100 0 000 000 0000
Q ss_pred --CCC-CeEeec-CCceeeEEccCCCeeecccccc---------------------------------cCccccCCCCCc
Q 015363 163 --GNG-PIFGSH-VSAIPKSYMANGGCGERNFGCA---------------------------------SNDSSFPPGGVS 205 (408)
Q Consensus 163 --~~~-~v~~~~-~~~~~~~~~~~~~~l~~~~~~~---------------------------------~~~~~~~~~~~~ 205 (408)
..+ .+.... .....+.|+..|.++.+..... ...+++ .....
T Consensus 509 e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lf-VaTq~ 587 (733)
T KOG0650|consen 509 ELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLF-VATQR 587 (733)
T ss_pred hhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEE-EEecc
Confidence 001 111111 2334678888888876543311 011111 23345
Q ss_pred eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (408)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
.|++|| +..... .+. +......|..++.+|.|..|+.| .|+.+..||+....+.++. +.-|...
T Consensus 588 ~vRiYd-L~kqel------vKk-L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~-------lr~H~~a 652 (733)
T KOG0650|consen 588 SVRIYD-LSKQEL------VKK-LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT-------LRLHEKA 652 (733)
T ss_pred ceEEEe-hhHHHH------HHH-HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH-------hhhhhhh
Confidence 667777 332211 122 23445779999999999988888 8999999999977667654 6779999
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEE------cCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363 285 ITSAEFHPTHCNMLAYSSSKGSIRLID------MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (408)
Q Consensus 285 v~~~~~~p~~~~~l~s~~~dg~i~iwd------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s 358 (408)
+++++|++.- .+|++|+.||++.|+- +..+-+ .-|++.+.+|... ....|.++.|+|.-.+|++
T Consensus 653 vr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpl-iVPlK~L~gH~~~--------~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 653 VRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPL-IVPLKRLRGHEKT--------NDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred hhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCc-eEeeeeccCceee--------cccceEeecccCCCceEEe
Confidence 9999999999 8999999999999984 323222 3567788888421 1235889999999999998
Q ss_pred e-CCCeEEEE
Q 015363 359 R-DYMTLKLW 367 (408)
Q Consensus 359 ~-~d~~v~~w 367 (408)
+ .||+|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 7 58999998
No 127
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=2.1e-20 Score=150.07 Aligned_cols=285 Identities=14% Similarity=0.194 Sum_probs=188.5
Q ss_pred cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (408)
+-...+.|+|||.-|++-+.|..+.+|++........... ....+.++.+++ ..+ ..|
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~-----~~~~~~~~~~r~---~eg--------------~tv 107 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG-----PLNFSKHLSYRY---QEG--------------ETV 107 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCC-----ccccccceeEEe---ccC--------------CEE
Confidence 3456789999999999999999999999754321000000 000011111111 111 447
Q ss_pred eEEEEee-----cCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 116 NKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 116 ~~v~~~p-----~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
..-+|-+ .|+..++|+.++|.-|++||.-+++.......-.+... + ....+++|+|||..|
T Consensus 108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de------~----taAhsL~Fs~DGeql---- 173 (406)
T KOG2919|consen 108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE------Y----TAAHSLQFSPDGEQL---- 173 (406)
T ss_pred EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHh------h----hhheeEEecCCCCeE----
Confidence 7777864 24466899999999999999999987765544322210 0 011279999999985
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccc-cccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLV-AGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
+ ++..+.|+++| ..+...... ...+..-..+..+-+.+++|+|... .++.| ...++-||.-. ...+
T Consensus 174 --------f-aGykrcirvFd-t~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~p 242 (406)
T KOG2919|consen 174 --------F-AGYKRCIRVFD-TSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRP 242 (406)
T ss_pred --------e-ecccceEEEee-ccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCc
Confidence 4 46778999999 533221110 0000000134457789999999875 78888 77888888877 3444
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
+.+ +.+|.+.|+.++|.++| +.|.+|+. |..|..||+|.-. .++..+..|... -...| -
T Consensus 243 l~l-------lggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~---~pv~~L~rhv~~--------TNQRI-~ 302 (406)
T KOG2919|consen 243 LQL-------LGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSR---DPVYALERHVGD--------TNQRI-L 302 (406)
T ss_pred eee-------ecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhcc---chhhhhhhhccC--------ccceE-E
Confidence 443 57899999999999999 77777776 7899999999764 445667666321 01222 2
Q ss_pred EEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccc
Q 015363 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (408)
Q Consensus 347 ~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~ 387 (408)
....|+|++|++|+ ||.|++||++..+..+..+..|....+
T Consensus 303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred EecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence 45578999999995 799999999987777777766655443
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.6e-21 Score=162.03 Aligned_cols=275 Identities=15% Similarity=0.176 Sum_probs=190.3
Q ss_pred eeeccceEEEEECCCC--CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 32 VQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.-+.+.|++++|+|.. +++|+|+..|+|-+||+.+.+ |++.-+..+..|.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------------------~d~d~v~~f~~hs--------- 234 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------------------KDKDGVYLFTPHS--------- 234 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-------------------CccCceEEeccCC---------
Confidence 4588999999999963 589999999999999997443 3444566788888
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.+|.++.|+|... ..+++.+.||+|++-|+++.....++...... ..+. .+.++.+...+
T Consensus 235 ---~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~------~~fs-------~~d~~~e~~~v--- 294 (498)
T KOG4328|consen 235 ---GPVSGLKFSPANT-SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN------IWFS-------SLDFSAESRSV--- 294 (498)
T ss_pred ---ccccceEecCCCh-hheeeeccCceeeeeeecchhhHHHhhcCccc------eeee-------eccccCCCccE---
Confidence 8899999998644 58999999999999999987654444432111 0111 33444444443
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
+.++.-|.+.+|| .+...... .. +.-|...|++++++|... +||++ -|++++|||++.....
T Consensus 295 ---------l~~~~~G~f~~iD-~R~~~s~~-----~~-~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 295 ---------LFGDNVGNFNVID-LRTDGSEY-----EN-LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK 358 (498)
T ss_pred ---------EEeecccceEEEE-eecCCccc-----hh-hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence 6666667888888 43322111 11 356777899999999875 56677 8999999999854332
Q ss_pred ee-EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 268 FN-IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 268 ~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
.. ++ ....|...|.+..|||++ -.|++.+.|..|+|||..--.....+..++. |.. ....|. ....
T Consensus 359 ~sp~l-----st~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~-----~t~Rwl-T~fK 425 (498)
T KOG4328|consen 359 ASPFL-----STLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN-----RTGRWL-TPFK 425 (498)
T ss_pred CCcce-----ecccccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceee-ccC-----cccccc-cchh
Confidence 21 11 245689999999999999 5599999999999999852111112222222 211 111222 2445
Q ss_pred EEEccCCCEEEEeCC-CeEEEEECCCCCCceeeeeeccc
Q 015363 347 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 347 ~~~spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
..|.|+..+++.|.. ..|-++|-.. ++.+..+.....
T Consensus 426 A~W~P~~~li~vg~~~r~IDv~~~~~-~q~v~el~~P~~ 463 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRYPRPIDVFDGNG-GQMVCELHDPES 463 (498)
T ss_pred heeCCCccEEEEeccCcceeEEcCCC-CEEeeeccCccc
Confidence 689999999999975 8899999986 676777655444
No 129
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.1e-20 Score=148.15 Aligned_cols=215 Identities=19% Similarity=0.264 Sum_probs=158.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..|+++.|+ .+|.++++++.|.++++||..+++.......+... +- .+.|......+
T Consensus 15 ~~i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG--------~~-------~~~Fth~~~~~------ 71 (311)
T KOG1446|consen 15 GKINSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG--------VD-------LACFTHHSNTV------ 71 (311)
T ss_pred CceeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc--------cc-------EEEEecCCceE------
Confidence 669999996 45889999999999999999999888776654321 00 23444333332
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (408)
+..+.-.|.+|+..+ +. ..+.++.+ .+|...|++++.+|-+..++++ .|++|++||++. .++.-.+
T Consensus 72 ----i~sStk~d~tIryLs-l~------dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l 138 (311)
T KOG1446|consen 72 ----IHSSTKEDDTIRYLS-LH------DNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-KKCQGLL 138 (311)
T ss_pred ----EEccCCCCCceEEEE-ee------cCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-CCCceEE
Confidence 112334477888766 32 24566665 9999999999999999999999 899999999994 4443332
Q ss_pred ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
. ...-..++|+|+| .++|++.....|+|||+|.... .|..++.-... -....+.+.|||
T Consensus 139 ~---------~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~~---------~~~ew~~l~FS~ 197 (311)
T KOG1446|consen 139 N---------LSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITDN---------DEAEWTDLEFSP 197 (311)
T ss_pred e---------cCCCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCCC---------CccceeeeEEcC
Confidence 1 1222468999999 9999998888999999997633 33344433311 125689999999
Q ss_pred CCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc
Q 015363 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (408)
Q Consensus 352 dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~ 385 (408)
||++|+.+. .+.+++.|.-. |..+.++.++...
T Consensus 198 dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 198 DGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNA 231 (311)
T ss_pred CCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCC
Confidence 999998886 48999999987 8999999988775
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=1.2e-21 Score=165.85 Aligned_cols=257 Identities=12% Similarity=0.202 Sum_probs=195.0
Q ss_pred cccceeeecccCcCcccc---eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363 14 PLEWKFSQVFGERTAGEE---VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (408)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~---~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (408)
-..|++.+. +.+.+... ..-.+-|.++.+.|||+.|++|+.-.++.|||+.....
T Consensus 442 VKVWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp--------------------- 499 (705)
T KOG0639|consen 442 VKVWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP--------------------- 499 (705)
T ss_pred EEEeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc---------------------
Confidence 456888876 33322221 23456789999999999999999999999999876542
Q ss_pred ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (408)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (408)
+....+..-. .....++.+|+ .+..+++..||.|.|||+.+...++.++.+.+. .
T Consensus 500 rikaeltssa------------paCyALa~spD--akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG--------a--- 554 (705)
T KOG0639|consen 500 RIKAELTSSA------------PACYALAISPD--AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG--------A--- 554 (705)
T ss_pred chhhhcCCcc------------hhhhhhhcCCc--cceeeeeccCCcEEEEEcccceeeecccCCCCC--------c---
Confidence 1222232222 23566777655 668889999999999999999888888777543 1
Q ss_pred cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE
Q 015363 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (408)
.++..+++|..| .+|+-|.+|+.|| ++...... .......|.++..+|++.+|+.
T Consensus 555 ----scIdis~dGtkl------------WTGGlDntvRcWD-lregrqlq--------qhdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 555 ----SCIDISKDGTKL------------WTGGLDNTVRCWD-LREGRQLQ--------QHDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred ----eeEEecCCCcee------------ecCCCccceeehh-hhhhhhhh--------hhhhhhhheecccCCCccceee
Confidence 168899999998 9999999999999 43321100 0223467999999999999999
Q ss_pred e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (408)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (408)
| .++.+.+...... ...+ +.-|...|.++.|.+.| +++++.+.|..+..|.+.-|.. .|+..+
T Consensus 610 GMens~vevlh~skp-~kyq--------lhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGas------iFqskE 673 (705)
T KOG0639|consen 610 GMENSNVEVLHTSKP-EKYQ--------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS------IFQSKE 673 (705)
T ss_pred ecccCcEEEEecCCc-ccee--------ecccccEEEEEEecccC-ceeeecCchhhhhhccCccccc------eeeccc
Confidence 9 8999999888733 3333 45688999999999999 9999999999999999988863 344443
Q ss_pred CCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI 369 (408)
Q Consensus 330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~ 369 (408)
.+.|.++.+|.|.++|++|+ |..-.+|.+
T Consensus 674 -----------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 -----------SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -----------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 37899999999999999996 677777764
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.9e-21 Score=159.79 Aligned_cols=256 Identities=11% Similarity=0.152 Sum_probs=174.6
Q ss_pred CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCC
Q 015363 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (408)
Q Consensus 47 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~ 126 (408)
|+|+|.|+.|..|.|||+.-....-++...-...+. ..- ...+.-...++|+ +.|.++.|+.. ..
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk-~~~-k~~k~~~~~~gHT------------davl~Ls~n~~-~~ 256 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASK-KKK-KKGKRSNSASGHT------------DAVLALSWNRN-FR 256 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhh-hhh-hhcccccccccch------------HHHHHHHhccc-cc
Confidence 789999999999999998643321110000000000 000 0000001233455 78999999743 34
Q ss_pred cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (408)
Q Consensus 127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (408)
..||+|+.|.+|++||+.++++...+..+.. .|. ++.|+|..... +++|+.|++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k--------~Vq-------~l~wh~~~p~~-----------LLsGs~D~~ 310 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGK--------KVQ-------TLEWHPYEPSV-----------LLSGSYDGT 310 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCC--------cee-------EEEecCCCceE-----------EEeccccce
Confidence 5899999999999999999999988876543 344 68888875543 599999999
Q ss_pred eeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (408)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
|.+.| ++... ..+... ...+.|-.++|+|.. ..++++ +||+|+-+|++..++++.. +..|...
T Consensus 311 V~l~D-~R~~~--~s~~~w-----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-------~~AHd~~ 375 (463)
T KOG0270|consen 311 VALKD-CRDPS--NSGKEW-----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-------LKAHDDE 375 (463)
T ss_pred EEeee-ccCcc--ccCceE-----EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-------EEeccCC
Confidence 99999 55311 111111 223678899999876 455566 9999999999988776654 6789999
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE-EEEeCC-C
Q 015363 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDY-M 362 (408)
Q Consensus 285 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~-l~s~~d-~ 362 (408)
|.++++++.-+.++++++.|+.|++|++..... +....|... .+...|.++.|+-.+ |+.|+. +
T Consensus 376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-----~~v~~~~~~---------~~rl~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-----KSVKEHSFK---------LGRLHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred cceEEecCCCCcceeeccccceEEEEeecCCCC-----ccccccccc---------ccceeecccCCCcceEEEecCccc
Confidence 999999999989999999999999999875432 222222110 134667778887654 445554 7
Q ss_pred eEEEEECCCC
Q 015363 363 TLKLWDINMD 372 (408)
Q Consensus 363 ~v~~wd~~~~ 372 (408)
.+++||+.+.
T Consensus 442 ~~~vwd~~~~ 451 (463)
T KOG0270|consen 442 VLRVWDIFTN 451 (463)
T ss_pred eEEEeecccC
Confidence 8999999873
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.6e-20 Score=147.60 Aligned_cols=255 Identities=16% Similarity=0.232 Sum_probs=181.4
Q ss_pred eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcE
Q 015363 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (408)
Q Consensus 49 ~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~ 128 (408)
.|++|++...|.=+++.-.. ..+.-+..|++..+-.+++|. ++|++++. + +.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-----------~~~~~s~~~~l~~lF~~~aH~------------~sitavAV--s--~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-----------KGCTDSVKPTLKPLFAFSAHA------------GSITALAV--S--GPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-----------cccccccceeeeccccccccc------------cceeEEEe--c--cee
Confidence 37788888777666654322 122223445555566778888 78999998 4 679
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceee
Q 015363 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (408)
Q Consensus 129 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (408)
+|+|+.|-+|+|||+........+..+. +.+. ++.|.++-.. ..+++++.||.|.
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~ll~Ha--------gsit-------aL~F~~~~S~----------shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGILLSHA--------GSIT-------ALKFYPPLSK----------SHLLSGSDDGHII 110 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcceeccc--------cceE-------EEEecCCcch----------hheeeecCCCcEE
Confidence 9999999999999999876555444432 2233 4556555430 1249999999999
Q ss_pred eceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEE
Q 015363 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287 (408)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 287 (408)
+|+ + ....+...+ .+|...|+.++.+|.+++.++. .|+.++.||+-.++..+.. + + ....+.
T Consensus 111 iw~-~------~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~-~-----L---~~~at~ 173 (362)
T KOG0294|consen 111 IWR-V------GSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL-N-----L---KNKATL 173 (362)
T ss_pred EEE-c------CCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee-c-----c---CCccee
Confidence 999 3 334555665 8999999999999999887776 9999999999866554322 1 1 222355
Q ss_pred EEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEE
Q 015363 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKL 366 (408)
Q Consensus 288 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~ 366 (408)
+.|+|.| .+|+.+..+ .|-+|.+.+.+.. ..+... ..+.++.|.. +..|++| +++.|.+
T Consensus 174 v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~~-------------~r~l~~~~l~-~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 174 VSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIENP-------------KRILCATFLD-GSELLVGGDNEWISL 233 (362)
T ss_pred eEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhcc-------------ccceeeeecC-CceEEEecCCceEEE
Confidence 9999999 777776654 6899999887543 333322 3578888874 5556665 6699999
Q ss_pred EECCCCCCceeeeeecccccceEEecC
Q 015363 367 WDINMDSGPVATFQVHEHLRPKVMHSS 393 (408)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (408)
||.+. ..++..+.+|+.....+..+-
T Consensus 234 ~D~ds-~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 234 KDTDS-DTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred eccCC-CccceeeecchhheeeeEEEe
Confidence 99997 799999999998877776433
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=3.1e-21 Score=157.77 Aligned_cols=220 Identities=18% Similarity=0.288 Sum_probs=154.9
Q ss_pred eeeccceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 32 VQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
-.|...=++|+|||- | .|++|..-+.|++|...++... . -...|.+|+
T Consensus 208 ~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~--v------------------d~~Pf~gH~--------- 257 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWK--V------------------DQRPFTGHT--------- 257 (440)
T ss_pred cccCccceeeeccccccc-ccccCccccceEeeeeccCcee--e------------------cCccccccc---------
Confidence 357777889999994 4 4889988899999999887642 0 012467788
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|-.++|+|+.++ .|++|+.||+|+|||++.+.....+
T Consensus 258 ---~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~------------------------------------- 296 (440)
T KOG0302|consen 258 ---KSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAV------------------------------------- 296 (440)
T ss_pred ---cchhhhccCCccCc-eEEeeecCceEEEEEecCCCcccee-------------------------------------
Confidence 77999999998775 8999999999999999987432210
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
. ..+|...|+.|.|+..-.+||+| +||+++|||++.-+...
T Consensus 297 -----------------------~---------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 297 -----------------------S---------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ 338 (440)
T ss_pred -----------------------E---------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC
Confidence 0 25777889999999998899999 99999999998543321
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc-ccccccccCCCCccccccc--cceeE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEI--IASIS 345 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h--~~~i~ 345 (408)
-+ ..+.-|..+|+++.|+|.....|++++.|.+|.|||+....-.... .....+ -..-+.+.+.-| +..|.
T Consensus 339 pV-----A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~-L~dlPpQLLFVHqGQke~K 412 (440)
T KOG0302|consen 339 PV-----ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG-LQDLPPQLLFVHQGQKEVK 412 (440)
T ss_pred cc-----eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc-hhcCCceeEEEecchhHhh
Confidence 11 2367899999999999988789999999999999999754321000 000000 000011222222 24688
Q ss_pred EEEEccCCC-EEEEe-CCCeEEEE
Q 015363 346 DIKFARNGR-HILSR-DYMTLKLW 367 (408)
Q Consensus 346 ~~~~spdg~-~l~s~-~d~~v~~w 367 (408)
.+.|++.-. +|++. -| -+.||
T Consensus 413 evhWH~QiPG~lvsTa~d-GfnVf 435 (440)
T KOG0302|consen 413 EVHWHRQIPGLLVSTAID-GFNVF 435 (440)
T ss_pred hheeccCCCCeEEEeccc-ceeEE
Confidence 999998533 45544 45 34444
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7e-21 Score=152.50 Aligned_cols=273 Identities=11% Similarity=0.116 Sum_probs=167.2
Q ss_pred eeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-----EEeccCCCC--cccCCCCC
Q 015363 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-----KVFDWNVHP--EKAAGNGP 166 (408)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~--~~~~~~~~ 166 (408)
..+++|. ..|++++|+ .||++|++++.|++|++|+++..+.. +......++ ..+.++..
T Consensus 80 ~~LKgH~------------~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~ 145 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK 145 (420)
T ss_pred hhhhccC------------CceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc
Confidence 4578888 679999995 66999999999999999999853211 110000111 12222221
Q ss_pred eEeecCCceeeEEccCCCeeecc---------------------------------cccccCccccCCCCCceeeeceee
Q 015363 167 IFGSHVSAIPKSYMANGGCGERN---------------------------------FGCASNDSSFPPGGVSSLRLPVVV 213 (408)
Q Consensus 167 v~~~~~~~~~~~~~~~~~~l~~~---------------------------------~~~~~~~~~~~~~~~~~i~~~~~~ 213 (408)
-+ +.+...|..|... .-..+..++++++.|..|.+|+ +
T Consensus 146 s~--------vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~-l 216 (420)
T KOG2096|consen 146 SV--------VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWD-L 216 (420)
T ss_pred eE--------EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEe-c
Confidence 11 1111112111100 0011234578999999999999 5
Q ss_pred eccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCC--CceeeEeecCCCcccCCcCCeEEEEE
Q 015363 214 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEF 290 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~ 290 (408)
.+.. +..+ ......-+..+++|+|++++++ ..--|++|..--. +...+. .+..++.+|...|..++|
T Consensus 217 kGq~-------L~~i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev--~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 217 KGQL-------LQSI-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV--KRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred CCce-------eeee-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh--hhhheeccchhheeeeee
Confidence 4322 1221 2222344567899999999987 7778999986422 111111 112458999999999999
Q ss_pred cCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 291 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~ 370 (408)
+|+. ..+++.+.||+++|||+.-.....+..+.++... ..+....+....+..+|+|+.||.+....++++..+
T Consensus 287 sn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-----~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se 360 (420)
T KOG2096|consen 287 SNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-----APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASE 360 (420)
T ss_pred CCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhcCC-----cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcc
Confidence 9999 8999999999999999874322211112222110 011112234458999999999999877789999999
Q ss_pred CCCCceeee-eecccccceEEecCCCeee--eeeceeee
Q 015363 371 MDSGPVATF-QVHEHLRPKVMHSSKNYFM--GLDNIHTL 406 (408)
Q Consensus 371 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~d~~~~~ 406 (408)
. ++....+ ..|.....++....++..+ +.||-.++
T Consensus 361 ~-g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv 398 (420)
T KOG2096|consen 361 D-GKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRV 398 (420)
T ss_pred c-CccchhHHHhhcCceeeEEecCCCcEEeeecceeeee
Confidence 7 5555544 4566666666655544433 33554443
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-19 Score=163.03 Aligned_cols=296 Identities=17% Similarity=0.249 Sum_probs=196.6
Q ss_pred CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (408)
....|++..- ...-+...+.+.|+++.=+|--..+|.|..+|+|.|++++.++.
T Consensus 183 ~lql~Nvrt~---K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki----------------------- 236 (910)
T KOG1539|consen 183 RLQLWNVRTG---KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI----------------------- 236 (910)
T ss_pred cEEEEEeccC---cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE-----------------------
Confidence 4556777651 22224456778999999999999999999999999999988763
Q ss_pred eeeeccCCcccccccccccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEec-cCCC---CcccCCCCCe
Q 015363 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFD-WNVH---PEKAAGNGPI 167 (408)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~---~~~~~~~~~v 167 (408)
+..|+... ++|++++|. .||. .+++|+..|.+.+||++..+...+.. .+.. ...+.+..+|
T Consensus 237 l~sFk~d~------------g~VtslSFr--tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 237 LMSFKQDW------------GRVTSLSFR--TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred EEEEEccc------------cceeEEEec--cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence 34555444 779999995 3455 55666778999999999877665544 2211 1223333333
Q ss_pred Eeec--CCceeeEE--ccCC--Ceeecccccc------------------------------------------------
Q 015363 168 FGSH--VSAIPKSY--MANG--GCGERNFGCA------------------------------------------------ 193 (408)
Q Consensus 168 ~~~~--~~~~~~~~--~~~~--~~l~~~~~~~------------------------------------------------ 193 (408)
.... +-...++. ++|| ++++.-.|++
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 3322 11111111 2222 2222211111
Q ss_pred ----------------------------------------------------------------------------cCcc
Q 015363 194 ----------------------------------------------------------------------------SNDS 197 (408)
Q Consensus 194 ----------------------------------------------------------------------------~~~~ 197 (408)
...|
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF 462 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF 462 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce
Confidence 0111
Q ss_pred ccCCCCCceeeeceeeeccccccccccceee--ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecC
Q 015363 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (408)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (408)
.+.|...|.|.+|+ +. .+..+..+ ...|..+|++++.+..++.++++ .+|.+++||... +.....++
T Consensus 463 ~~IG~S~G~Id~fN-mQ------SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~-- 532 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFN-MQ------SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLR-- 532 (910)
T ss_pred EEEeccCCeEEEEE-cc------cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeec--
Confidence 22233333333333 11 11111222 25788999999999999999998 999999999983 33333221
Q ss_pred CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (408)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~ 354 (408)
-...+.++..+... .++|.+..|-.|+++|+.+.+.+ +.|.+| +..|++++|||||+
T Consensus 533 ------l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kvv----R~f~gh------------~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 533 ------LGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKVV----REFWGH------------GNRITDMTFSPDGR 589 (910)
T ss_pred ------cCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhhh----HHhhcc------------ccceeeeEeCCCCc
Confidence 24557788888888 89999999999999999988665 777777 58899999999999
Q ss_pred EEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363 355 HILSRD-YMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 355 ~l~s~~-d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
+|++++ |++|++||+.+ +.++..+...
T Consensus 590 WlisasmD~tIr~wDlpt-~~lID~~~vd 617 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPT-GTLIDGLLVD 617 (910)
T ss_pred EEEEeecCCcEEEEeccC-cceeeeEecC
Confidence 999997 79999999998 6777766543
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.5e-20 Score=149.09 Aligned_cols=224 Identities=14% Similarity=0.213 Sum_probs=154.0
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE----EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK----KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
+.|+++..-+. .|.++++|+.||.|.+||+++..-. .+.+.........+++.-++. ...+++.-|...+
T Consensus 44 GsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~i---ss~~WyP~DtGmF-- 117 (397)
T KOG4283|consen 44 GSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAI---SSAIWYPIDTGMF-- 117 (397)
T ss_pred Cccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeee---eeeEEeeecCcee--
Confidence 67999998654 4789999999999999999864310 000000000001112211110 0123444444443
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC---CCEEEEe-cCCeEEEEeCCCC
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEIS 264 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~d~~i~iwd~~~~ 264 (408)
.+++.|.++++|| ....+... . ..-.+.|.+-+++|- ..++|+| .+-.|++.|+. .
T Consensus 118 ----------tssSFDhtlKVWD-tnTlQ~a~------~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-S 177 (397)
T KOG4283|consen 118 ----------TSSSFDHTLKVWD-TNTLQEAV------D--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-S 177 (397)
T ss_pred ----------ecccccceEEEee-cccceeeE------E--eecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-C
Confidence 7899999999999 43322211 1 123355777778875 3467778 89999999999 5
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC--CCCccccccccc
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTRSFFTEIIA 342 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~ 342 (408)
+....+ +.+|...|.++.|+|....+|++|+.||.|++||++...-| +..+..|.. +.....-..|.+
T Consensus 178 Gs~sH~-------LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 178 GSFSHT-------LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYG 247 (397)
T ss_pred Ccceee-------eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccc
Confidence 555443 79999999999999999788999999999999999977544 355555542 112224567999
Q ss_pred eeEEEEEccCCCEEEEeC-CCeEEEEECCCC
Q 015363 343 SISDIKFARNGRHILSRD-YMTLKLWDINMD 372 (408)
Q Consensus 343 ~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~ 372 (408)
.|..++|+.||.+++++. |..+++|+..++
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccC
Confidence 999999999999999874 799999999874
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2.1e-20 Score=162.77 Aligned_cols=285 Identities=17% Similarity=0.189 Sum_probs=191.6
Q ss_pred eccceEE--EEECCC---CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 34 EVDIISA--IEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 34 h~~~V~~--~~~s~~---~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
|.-++.. ..|++- ...||.+..||.|.++|...... .++-+.+..+..|.
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f-----------------r~ee~~lk~~~aH~-------- 100 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVF-----------------RLEERQLKKPLAHK-------- 100 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhc-----------------chhhhhhccccccc--------
Confidence 3444444 667653 56899999999999999765432 12223345567787
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE--eccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV--FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
..|.++.|.|. ..+|++++.|.++++||+++.++... ...| .+.+. +++|.|+...+
T Consensus 101 ----nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH--------~~Svk-------S~cf~~~n~~v 159 (720)
T KOG0321|consen 101 ----NAIFDLKWAPG--ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH--------TGSVK-------SECFMPTNPAV 159 (720)
T ss_pred ----ceeEeeccCCC--ceeEEEccCCceeeeeeeccceeecceeeccc--------ccccc-------hhhhccCCCcc
Confidence 77999999773 56899999999999999999887765 3333 22333 67888887765
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccc--cc------------c---cccc----ceeeccccccceEE---EEeC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQE--TN------------L---VAGC----RRIYAHAHDYHINS---ISNN 242 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~------------~---~~~~----~~~~~~~~~~~v~~---i~~~ 242 (408)
+++|+.|+.|.+|| ++-.. .. . ..++ .+. ..++...|.+ +.+.
T Consensus 160 -----------F~tGgRDg~illWD-~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k-~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 160 -----------FCTGGRDGEILLWD-CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK-WKAASNTIFSSVTVVLF 226 (720)
T ss_pred -----------eeeccCCCcEEEEE-EeccchhhHHHHhhhhhccccCCCCCCchhhccccc-cccccCceeeeeEEEEE
Confidence 68899999999999 54221 10 0 0011 111 1344455555 5566
Q ss_pred CCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcccCC---cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363 243 SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (408)
Q Consensus 243 ~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 317 (408)
.|...||++ .|+.|+|||++........-......+..| .-.+.++.....| .+|.+.+.|+.|++|++.+-..
T Consensus 227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSI 305 (720)
T ss_pred eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCc
Confidence 788889886 599999999996544433222211223333 4457888888889 4555455599999999987653
Q ss_pred ecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEE
Q 015363 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVM 390 (408)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 390 (408)
.++..+.++... .....-..+||+.+|++|+ |...++|.+++.......+.+|.-++..+.
T Consensus 306 --sP~~~~sg~~~~----------sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~ 367 (720)
T KOG0321|consen 306 --SPVAEFSGKLNS----------SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR 367 (720)
T ss_pred --CchhhccCcccc----------eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence 445555555321 1222335789999999995 899999999987778888888877654443
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-20 Score=158.13 Aligned_cols=265 Identities=12% Similarity=0.178 Sum_probs=190.6
Q ss_pred ceEEEEECCCCCeEEEe--ecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 37 IISAIEFDKSGDHLATG--DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 37 ~V~~~~~s~~~~~l~sg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
.|.++.|+.... |+++ +.|..+++|.-.+.. |+...+....+... .-
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~-------------------~~Vp~~~k~~gd~~-----------~C 84 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKT-------------------PEVPRVRKLTGDNA-----------FC 84 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCC-------------------CccceeeccccchH-----------HH
Confidence 389999987764 4444 467788899754432 12223333333320 11
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
|.+..+ .-++++|+..+.|+|||++...+.+.++.+... |. .+.++.+..+|
T Consensus 85 v~~~s~-----S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st--------vt-------~v~YN~~Deyi-------- 136 (673)
T KOG4378|consen 85 VACASQ-----SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST--------VT-------YVDYNNTDEYI-------- 136 (673)
T ss_pred Hhhhhc-----ceeeeccCcCceeeehhhHHHHHhhhccCCcce--------eE-------EEEecCCccee--------
Confidence 333443 358999999999999999977777666665422 33 57788888887
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEEeCCCCCceeeEee
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
++++..|.|.+-. +..... . ..+.......|+-+.++|..+.+++ + ++|.|.+||+......+..
T Consensus 137 ----Asvs~gGdiiih~-~~t~~~---t---t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-- 203 (673)
T KOG4378|consen 137 ----ASVSDGGDIIIHG-TKTKQK---T---TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-- 203 (673)
T ss_pred ----EEeccCCcEEEEe-cccCcc---c---cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--
Confidence 8888889888766 322111 1 1111222455778999999887765 4 8999999999944434332
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
...|..+...|+|+|.++.+|++.+.|..|.+||++..+.. ..+... .+...++|+++
T Consensus 204 -----~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y~-------------~Plstvaf~~~ 261 (673)
T KOG4378|consen 204 -----SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTYS-------------HPLSTVAFSEC 261 (673)
T ss_pred -----hhhccCCcCcceecCCccceEEEecccceEEEeeccccccc----ceeeec-------------CCcceeeecCC
Confidence 56799999999999999899999999999999999977554 222222 46889999999
Q ss_pred CCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCC
Q 015363 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKN 395 (408)
Q Consensus 353 g~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (408)
|.+|++|+ .|.|..||++.-..+++++..|...+.++...+..
T Consensus 262 G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 262 GTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999996 59999999998789999999999988777765554
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=3.8e-19 Score=151.01 Aligned_cols=259 Identities=15% Similarity=0.222 Sum_probs=172.5
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
+.-|.|++|.++|+ ++||..+|.|.||+..+.+. ......|. +.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-----------------------~k~~~aH~------------gg 289 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-----------------------SKQVHAHD------------GG 289 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----------------------EeEeeecC------------Cc
Confidence 46799999999998 89999999999999865542 23334888 77
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCC--Ccc-cC-CCCCeEeecCCce----------eeEEc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVH--PEK-AA-GNGPIFGSHVSAI----------PKSYM 180 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~~~-~~-~~~~v~~~~~~~~----------~~~~~ 180 (408)
|.+++... +| .|++|+.|+.|..||-.-. ..+..+.+.. +.. .. ..+.++....... .+..-
T Consensus 290 v~~L~~lr--~G-tllSGgKDRki~~Wd~~y~-k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 290 VFSLCMLR--DG-TLLSGGKDRKIILWDDNYR-KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred eEEEEEec--Cc-cEeecCccceEEecccccc-ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 99999964 47 5667999999999993221 1111111111 100 00 0111221111111 11111
Q ss_pred cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEE
Q 015363 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLW 259 (408)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iw 259 (408)
-.+..+-.+..+.....+++++.|+.+++|+ - ..... ...-..++.++.|+|.| .+|.| ..|...+.
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~-~----~k~~w------t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D----HKLEW------TKIIEDPAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEcc-C----CceeE------EEEecCceeEeeccCcc-eEEEeeccceEEEE
Confidence 1122333334444555679999999999998 1 11111 12233678899999999 88888 89999999
Q ss_pred eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (408)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (408)
|.++ ...+.+ .. ...++++++|+|+| .+||.|+.|+.|+||-+....... .....+ .
T Consensus 434 d~e~-~~lv~~-------~~-d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y---~r~~k~---------~- 490 (626)
T KOG2106|consen 434 DTET-QDLVTI-------HT-DNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKY---SRVGKC---------S- 490 (626)
T ss_pred eccc-ceeEEE-------Ee-cCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEE---EEeeee---------c-
Confidence 9994 444443 12 27889999999999 999999999999999988765321 111111 1
Q ss_pred ccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363 340 IIASISDIKFARNGRHILSRD-YMTLKLWDI 369 (408)
Q Consensus 340 h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~ 369 (408)
.++|+.+.||+|+++|.+-+ |-.|..|.-
T Consensus 491 -gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 491 -GSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred -CceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 26899999999999999975 788999943
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=1.4e-18 Score=147.55 Aligned_cols=276 Identities=12% Similarity=0.232 Sum_probs=195.6
Q ss_pred cceeeccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
+...-++.|....|+|.+. ++++++ .|.+..|+..++... +....|..++.
T Consensus 195 ~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~--------------------k~~~~fek~ek------- 246 (626)
T KOG2106|consen 195 PVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLV--------------------KRQGIFEKREK------- 246 (626)
T ss_pred cceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceE--------------------EEeeccccccc-------
Confidence 4445667889999999755 555554 569999998877532 11223444442
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..|.|++|.+ || -+++|.++|.|.||+..+.+..+....| ++.|+ +++...+|..
T Consensus 247 ----k~Vl~v~F~e--ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--------~ggv~-------~L~~lr~Gtl--- 301 (626)
T KOG2106|consen 247 ----KFVLCVTFLE--NG-DVITGDSGGNILIWSKGTNRISKQVHAH--------DGGVF-------SLCMLRDGTL--- 301 (626)
T ss_pred ----eEEEEEEEcC--CC-CEEeecCCceEEEEeCCCceEEeEeeec--------CCceE-------EEEEecCccE---
Confidence 5599999964 46 4889999999999999877665544433 55676 7888889986
Q ss_pred ccccccCccccCCCCCceeeeceeeec----ccccc----------------ccc------------cceeeccccccce
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTS----QETNL----------------VAG------------CRRIYAHAHDYHI 236 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~----------------~~~------------~~~~~~~~~~~~v 236 (408)
++|+.|+.|..||-..+ .+... .+. -......+|....
T Consensus 302 ----------lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~del 371 (626)
T KOG2106|consen 302 ----------LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDEL 371 (626)
T ss_pred ----------eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccce
Confidence 56999999999982100 00000 000 0011125777888
Q ss_pred EEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 237 ~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
..++.+|+.+.++++ .|+.+++|+ + .+.....+ -..++.++.|+|.| .+|.|...|...+.|..+.
T Consensus 372 wgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~~---------~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 372 WGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTKI---------IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred eeEEcCCChhheeeccCcceEEEcc-C-CceeEEEE---------ecCceeEeeccCcc--eEEEeeccceEEEEecccc
Confidence 899999999999998 999999999 3 33333321 24667899999998 8999999999999999986
Q ss_pred ceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccc-cceEEecC
Q 015363 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL-RPKVMHSS 393 (408)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~ 393 (408)
..+ ..|.. ..+++.++|+|+|.+||.|+ |+.|+||.++..+..+..+..+.+. ...+....
T Consensus 439 ~lv-------~~~~d----------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 439 DLV-------TIHTD----------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred eeE-------EEEec----------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 443 22211 25799999999999999997 7999999999888888888777762 33333344
Q ss_pred CCeee
Q 015363 394 KNYFM 398 (408)
Q Consensus 394 ~~~~~ 398 (408)
++.++
T Consensus 502 Ds~~~ 506 (626)
T KOG2106|consen 502 DSQFL 506 (626)
T ss_pred CCceE
Confidence 44443
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.6e-21 Score=178.32 Aligned_cols=259 Identities=13% Similarity=0.161 Sum_probs=187.8
Q ss_pred cceeeccceEEEEECCCCCe----EEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDH----LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~----l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 105 (408)
..++-...-+.++|.+.|.. ||.|..||.|.+||...-.. ......+..+..|+
T Consensus 59 ~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~~~~~la~~~~h~----- 116 (1049)
T KOG0307|consen 59 GSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NASEEVLATKSKHT----- 116 (1049)
T ss_pred ccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------CcchHHHhhhcccC-----
Confidence 33455677889999997765 99999999999999765210 01334556677788
Q ss_pred ccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
+.|..+.|++..+ .+||+|+.||.|.|||+..-+.-..... ..+...|. +++|+..-..
T Consensus 117 -------G~V~gLDfN~~q~-nlLASGa~~geI~iWDlnn~~tP~~~~~------~~~~~eI~-------~lsWNrkvqh 175 (1049)
T KOG0307|consen 117 -------GPVLGLDFNPFQG-NLLASGADDGEILIWDLNKPETPFTPGS------QAPPSEIK-------CLSWNRKVSH 175 (1049)
T ss_pred -------CceeeeeccccCC-ceeeccCCCCcEEEeccCCcCCCCCCCC------CCCcccce-------EeccchhhhH
Confidence 7799999987643 5999999999999999987432221110 11122233 6777766655
Q ss_pred eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe--c--CCeEEEEe
Q 015363 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA--D--DLRINLWN 260 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~--~--d~~i~iwd 260 (408)
+ +++++.++.+.+|| ++..+....-. .......+..++|+|+. ..++++ + .-.|.+||
T Consensus 176 I-----------LAS~s~sg~~~iWD-lr~~~pii~ls-----~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 176 I-----------LASGSPSGRAVIWD-LRKKKPIIKLS-----DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred H-----------hhccCCCCCceecc-ccCCCcccccc-----cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 4 68899999999999 66543221100 11222457899999997 334443 3 45899999
Q ss_pred CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
++......++ +++|...|.++.|++.++.+|++++.|++|.+|+.++++.+ ..+...
T Consensus 239 lR~assP~k~-------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl----~~~p~~------------ 295 (1049)
T KOG0307|consen 239 LRFASSPLKI-------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL----GELPAQ------------ 295 (1049)
T ss_pred ccccCCchhh-------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe----eecCCC------------
Confidence 9966666654 68899999999999998899999999999999999999765 555543
Q ss_pred cceeEEEEEccCCC-EEEEeC-CCeEEEEECCC
Q 015363 341 IASISDIKFARNGR-HILSRD-YMTLKLWDINM 371 (408)
Q Consensus 341 ~~~i~~~~~spdg~-~l~s~~-d~~v~~wd~~~ 371 (408)
..++..+.|+|... .+++++ ||.|.|+.+..
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 36899999999776 555556 79999999975
No 142
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=2.4e-19 Score=161.39 Aligned_cols=289 Identities=14% Similarity=0.186 Sum_probs=189.4
Q ss_pred CcccceeeecccCcCcccceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc
Q 015363 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (408)
..+.|.+... ..+.....-...|+|+.|+|. ..+||.|+.+|.|.+||+..+... |-..
T Consensus 223 ~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG 282 (555)
T ss_pred eEEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence 4677888864 122233445678999999995 779999999999999998876531 0000
Q ss_pred eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-EEEeccCCCCcccCCCCCeEee
Q 015363 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGS 170 (408)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 170 (408)
.-.....|. .+++.+.|..++.+.-|++++.||.|..|+++.-.. ........... .+.-...
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----~~~~~~~ 346 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----KGQQSSK 346 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----ccccccc
Confidence 111123344 889999998776666799999999999998764322 11111100000 0000000
Q ss_pred cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccccc--ccccceeeccccccceEEEEeCCCCCEE
Q 015363 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDGETF 248 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l 248 (408)
....+.+.|.+..... ++.|+++|.|..-. -.+..... ..+.... ...|.+.|+++.++|-+..+
T Consensus 347 ~~~~t~~~F~~~~p~~-----------FiVGTe~G~v~~~~-r~g~~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNH-----------FIVGTEEGKVYKGC-RKGYTPAPEVSYKGHST-FITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred ccceeeEeeccCCCce-----------EEEEcCCcEEEEEe-ccCCccccccccccccc-ccccCcceEeeecCCCccce
Confidence 1122256666655433 57888899887622 11111111 1111222 36788999999999998766
Q ss_pred EEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccc
Q 015363 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (408)
Q Consensus 249 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (408)
+.. .|.+++||.......++. .+..+...+++++|||..+.+|+++..||.|.+||+..... .|+.....
T Consensus 414 fls~gDW~vriWs~~~~~~Pl~-------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--~Pv~s~~~ 484 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASPLL-------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--EPVLSQKV 484 (555)
T ss_pred eeeeccceeEeccccCCCCcch-------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--CCcccccc
Confidence 655 899999999873333322 14556677999999999999999999999999999986543 22232222
Q ss_pred ccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (408)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~ 371 (408)
. ......+.|+++|+.|+.|++ |.+.+|++..
T Consensus 485 ~------------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 C------------SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred c------------ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 2 245678899999999999986 9999999963
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=2.1e-19 Score=156.66 Aligned_cols=270 Identities=13% Similarity=0.178 Sum_probs=177.0
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
....|.+.|..+.|-|-...|++++-|.++++||+++.+.. -...+.+|+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---------------------G~~~~~GH~--------- 144 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---------------------GGRLNLGHT--------- 144 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---------------------cceeecccc---------
Confidence 45689999999999996668999999999999999987653 112477888
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEE-------EeccCCC---Ccc---------cCCCCCeEee
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-------VFDWNVH---PEK---------AAGNGPIFGS 170 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~-------~~~~~~~---~~~---------~~~~~~v~~~ 170 (408)
..|.+++|.|... ..|++|++||.|.|||++-..... ....+.. +.. ..+.+.+.
T Consensus 145 ---~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~-- 218 (720)
T KOG0321|consen 145 ---GSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF-- 218 (720)
T ss_pred ---cccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee--
Confidence 7799999998643 589999999999999997543111 1111111 100 00011111
Q ss_pred cCCceeeEEccCCCeeecccccccCccccCCCC-Cceeeeceeeeccccccccccceee-cccc---ccceEEEEeCCCC
Q 015363 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIY-AHAH---DYHINSISNNSDG 245 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~v~~i~~~~~~ 245 (408)
+.+.+.+..|...| ++++. |+.|++|| ++.........+.... ...| .-.+.++..+..|
T Consensus 219 --ssvTvv~fkDe~tl------------aSaga~D~~iKVWD-LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 219 --SSVTVVLFKDESTL------------ASAGAADSTIKVWD-LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred --eeeEEEEEecccee------------eeccCCCcceEEEe-ecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 11223444444444 66555 99999999 7765544433333221 1222 3356778888888
Q ss_pred CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (408)
Q Consensus 246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 322 (408)
.+|.+. .|+.|++|++......... .+.++.. .-..-..+|++ .++++|+.|...++|.+.+... +.
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~------~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~---~~ 353 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVA------EFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA---PP 353 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchh------hccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC---Ch
Confidence 887766 9999999999854332110 1222211 11233568999 9999999999999999987542 23
Q ss_pred cccccccCCCCccccccccceeEEEEEccCC-CEEEEeC-CCeEEEEECCCC
Q 015363 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMD 372 (408)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~~-d~~v~~wd~~~~ 372 (408)
..+.+ |...|++++|.|.. .-+++++ |..+++|++..+
T Consensus 354 ~~l~G------------ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 354 ALLLG------------HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhC------------cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 44444 46889999999832 2345554 699999999763
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=3e-19 Score=141.29 Aligned_cols=274 Identities=12% Similarity=0.172 Sum_probs=181.9
Q ss_pred ceeeccceEEEEECCC-CCeEEEeecC-------CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec-cCCc
Q 015363 31 EVQEVDIISAIEFDKS-GDHLATGDRG-------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEP 101 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~-~~~l~sg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~ 101 (408)
+..|.+.|+.++-+|. .++|+|+..+ -.+-||.+...... . .+...+.+..+. .+-
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-S-------------~~~tlE~v~~Ldteav- 123 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-S-------------NSSTLECVASLDTEAV- 123 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-c-------------ccchhhHhhcCCHHHh-
Confidence 3457899999999995 5567776542 24678998654321 1 111222233332 222
Q ss_pred ccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE-EEEeccCCCCcccCCCCCeEeecCCceeeEEc
Q 015363 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (408)
Q Consensus 102 ~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (408)
++|.|+.|.|+ +..+++-. |..|.+|++.++.. ........... ......+-.|+
T Consensus 124 -----------g~i~cvew~Pn--s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e----------~~~~ftsg~Ws 179 (370)
T KOG1007|consen 124 -----------GKINCVEWEPN--SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE----------MRHSFTSGAWS 179 (370)
T ss_pred -----------CceeeEEEcCC--CCeeEEec-cCceEEEEcccCcchheeeccccccc----------ccceecccccC
Confidence 57999999875 65776654 88999999987654 22222211110 00111245677
Q ss_pred c--CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeE
Q 015363 181 A--NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRI 256 (408)
Q Consensus 181 ~--~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i 256 (408)
| +|.. +....++++..|| ++.+.. ...+-.+|...|+.+.|+|+.+ +|+++ +||.|
T Consensus 180 pHHdgnq-------------v~tt~d~tl~~~D-~RT~~~------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyv 239 (370)
T KOG1007|consen 180 PHHDGNQ-------------VATTSDSTLQFWD-LRTMKK------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYV 239 (370)
T ss_pred CCCccce-------------EEEeCCCcEEEEE-ccchhh------hcchhhhhcceeeeccCCCCceEEEEEcCCCccE
Confidence 7 4444 6667889999999 654322 2222378889999999999975 55667 99999
Q ss_pred EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecc-----cccccccc---
Q 015363 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-----HSKLFEEQ--- 328 (408)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~--- 328 (408)
++||++..+.++. ++.+|.-+|+++.|+|...+++++|+.|..|.+|...+-..... .....+.+
T Consensus 240 riWD~R~tk~pv~-------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse 312 (370)
T KOG1007|consen 240 RIWDTRKTKFPVQ-------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE 312 (370)
T ss_pred EEEeccCCCcccc-------ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence 9999997666654 37899999999999999889999999999999997654321100 00001111
Q ss_pred -----cCCCCccccccccceeEEEEEccCCCEEEEe-C-CCeEEEEECC
Q 015363 329 -----EAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDIN 370 (408)
Q Consensus 329 -----~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d~~v~~wd~~ 370 (408)
-..+....+..|...|.+++||.-..+++++ + ||.+.|=.+.
T Consensus 313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred HhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1122344678899999999999877887776 6 6999887764
No 145
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=3.8e-19 Score=156.41 Aligned_cols=332 Identities=16% Similarity=0.191 Sum_probs=219.1
Q ss_pred cceeeccceEEEEECCCCC---eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcccee----------eee
Q 015363 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK----------TEF 96 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~---~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------~~~ 96 (408)
+..+|.++|.+++|...+. +||++|.|..||||.+.-........++... ......|.+... +.+
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~--t~~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL--TTLSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc--ccccCCceeeeeeeEEEEEehhhhh
Confidence 5568999999999997543 8999999999999998655422211111100 011112222211 334
Q ss_pred ccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCcee
Q 015363 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (408)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (408)
.||+ +.|.++.|+|. +..|++++.|.++.+|...+..-+.+......... ...+..+ .
T Consensus 264 ~GHe------------DWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~-------g 321 (764)
T KOG1063|consen 264 MGHE------------DWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFW-------G 321 (764)
T ss_pred cCcc------------cceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeeccc-cccccee-------e
Confidence 5777 88999999765 77899999999999998876532222221111100 0122233 6
Q ss_pred eEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCe
Q 015363 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 255 (408)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~ 255 (408)
..|+|++..+ ++-+..|..++|. - +......... ...+|.+.|++++|+|.|.+|.+. .|.+
T Consensus 322 ~lw~~n~~~i------------i~~g~~Gg~hlWk-t---~d~~~w~~~~-~iSGH~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 322 GLWSPNSNVI------------IAHGRTGGFHLWK-T---KDKTFWTQEP-VISGHVDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred EEEcCCCCEE------------EEecccCcEEEEe-c---cCccceeecc-ccccccccceeeeecCCCCEEEEeccccc
Confidence 7899999887 8888889999886 1 1111112222 248999999999999999999998 8999
Q ss_pred EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc-------------------
Q 015363 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA------------------- 316 (408)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~------------------- 316 (408)
-++|-.-..+.... ++ .+-+-|.-.++|++|-+.. ..|++|.....+|+|+....-
T Consensus 385 TRlFa~wg~q~~wH--Ei--aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p 459 (764)
T KOG1063|consen 385 TRLFARWGRQQEWH--EI--ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELP 459 (764)
T ss_pred eeeeccccccccee--ee--cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcc
Confidence 99987652222221 11 2234577778999998864 789999999999999754210
Q ss_pred ---------eecccccc---ccccc------C-----------CCC------------ccccccccceeEEEEEccCCCE
Q 015363 317 ---------LCDTHSKL---FEEQE------A-----------PGT------------RSFFTEIIASISDIKFARNGRH 355 (408)
Q Consensus 317 ---------~~~~~~~~---~~~~~------~-----------~~~------------~~~~~~h~~~i~~~~~spdg~~ 355 (408)
+..++... -.+.. . |.. ...+.||.-.|.+++.+|+|++
T Consensus 460 ~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl 539 (764)
T KOG1063|consen 460 DGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL 539 (764)
T ss_pred cccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE
Confidence 00000000 00000 0 000 0124788899999999999999
Q ss_pred EEEe--C---C-CeEEEEECCCCCCceeeeeecccccceEEecCCCeee---eeeceeeecC
Q 015363 356 ILSR--D---Y-MTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIHTLYE 408 (408)
Q Consensus 356 l~s~--~---d-~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~ 408 (408)
||++ + . ..|++|+..+. ...+.+.+|......+....++.++ +-||-..|||
T Consensus 540 iASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 540 IASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 9986 2 2 67999999984 7777999999998888877776644 4488888886
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.4e-20 Score=153.78 Aligned_cols=236 Identities=15% Similarity=0.254 Sum_probs=173.1
Q ss_pred ccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (408)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (408)
....+.|.++. |.... ...+|--.|+|+.|+-||.+|+||+.||.|.+|.+.+.-.. . .....
T Consensus 102 ~g~lYlWelss--G~LL~-v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a------~--------~~~~~ 164 (476)
T KOG0646|consen 102 SGNLYLWELSS--GILLN-VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA------D--------NDHSV 164 (476)
T ss_pred cCcEEEEEecc--ccHHH-HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc------c--------cCCCc
Confidence 34577888886 22221 33689999999999999999999999999999997643211 0 00134
Q ss_pred ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (408)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (408)
+++..|..|. -+|+++...+.+...++++++.|.++++||+..+..+..+.+.... .
T Consensus 165 ~p~~~f~~Ht------------lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si---------~-- 221 (476)
T KOG0646|consen 165 KPLHIFSDHT------------LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSI---------K-- 221 (476)
T ss_pred cceeeeccCc------------ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcc---------e--
Confidence 4567788998 7799999976644569999999999999999999888776664322 2
Q ss_pred cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc----------ccccccceeecccccc--ceEE
Q 015363 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET----------NLVAGCRRIYAHAHDY--HINS 238 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~v~~ 238 (408)
+++..|.+..+ +.|+.+|.|.+.+ +..... ......++.+ .+|.+ .|+|
T Consensus 222 -----av~lDpae~~~------------yiGt~~G~I~~~~-~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITc 282 (476)
T KOG0646|consen 222 -----AVALDPAERVV------------YIGTEEGKIFQNL-LFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITC 282 (476)
T ss_pred -----eEEEcccccEE------------EecCCcceEEeee-hhcCCcccccccccccccccceeeee-ccccCCcceeE
Confidence 68888888887 9999999998877 433221 1222233343 78877 9999
Q ss_pred EEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 239 i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
++++-||.+|++| .||.|+|||+. ++++++. +....++|+.+.+.|-.+..+..-.....+-.|++.
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~-S~Q~iRt-------l~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIY-SKQCIRT-------LQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecc-hHHHHHH-------HhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 9999999999999 89999999999 6777654 333578899999987763333333334455555544
No 147
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=3.9e-20 Score=150.64 Aligned_cols=232 Identities=13% Similarity=0.192 Sum_probs=155.9
Q ss_pred eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc--ccCCCCCeEe
Q 015363 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNGPIFG 169 (408)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~ 169 (408)
++..+.+|. +.|.+++=+|..- ..+++|+.||.|++||+.+..+...+..+.... .......++.
T Consensus 58 Fv~~L~gHr------------dGV~~lakhp~~l-s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~t 124 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKHPNKL-STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFT 124 (433)
T ss_pred chhhccccc------------cccchhhcCcchh-hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEE
Confidence 556678888 8899999876532 478999999999999999988888877775441 1111123333
Q ss_pred ecCCceeeEEccCCCeeecccccc---------cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEE
Q 015363 170 SHVSAIPKSYMANGGCGERNFGCA---------SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240 (408)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 240 (408)
+++...--.|.-++..+.++.+.+ ....+++++ ..|.+|| ..+ ..+++.+ .-....|.++.
T Consensus 125 vgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD-~~R------~~Pv~sm-swG~Dti~svk 194 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWD-EQR------DNPVSSM-SWGADSISSVK 194 (433)
T ss_pred ecCCcceeeeeccCCcceeeeccccccccccccccccccccC--ceeeecc-ccc------CCcccee-ecCCCceeEEe
Confidence 333222223333333333332211 112233332 3577787 333 2222222 22335688999
Q ss_pred eCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 241 NNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 241 ~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
|+|.. .+|+++ +|+.|.+||++......+++ + ...-..|+|+|.+ ..|++|+.|..++.||++...
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------~---~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-- 262 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVI------L---TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-- 262 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceee------e---eccccceecCccc-cceeeccccccceehhhhhhc--
Confidence 99986 456667 99999999999655443332 1 2223679999977 889999999999999999654
Q ss_pred cccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
+|+..+.+| .+.|.+++|||.|+-+++|+ |.+|+||.++.
T Consensus 263 -~p~~v~~dh------------vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 263 -RPLNVHKDH------------VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred -ccchhhccc------------ceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 445555555 78999999999999999998 79999999985
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=1.4e-17 Score=145.06 Aligned_cols=240 Identities=10% Similarity=0.121 Sum_probs=155.7
Q ss_pred CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCC
Q 015363 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (408)
Q Consensus 47 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~ 126 (408)
+.++++++.|+.|++||..+++. +..+..+. .+.+++|+|+ +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~~-------------~~~~l~~~~d--g 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVGQ-------------RPRGITLSKD--G 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECCC-------------CCCceEECCC--C
Confidence 35788999999999999876642 33444443 3678999654 7
Q ss_pred cEE-EEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (408)
Q Consensus 127 ~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (408)
..+ ++++.++.|++||+.+++....+..... . ..+.++|+++.+ ++++..++
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------~-------~~~~~~~~g~~l-----------~~~~~~~~ 95 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---------P-------ELFALHPNGKIL-----------YIANEDDN 95 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCCC---------c-------cEEEECCCCCEE-----------EEEcCCCC
Confidence 665 5667899999999998876654432211 1 147889999876 24456688
Q ss_pred eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC-CeEEEEeCCCCCceeeEeecCCCcccCCcC
Q 015363 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (408)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
.+++|| +... .....+ .+...+.+++|+|++.+++++ .+ ..+.+||.++. ...... . ...
T Consensus 96 ~l~~~d-~~~~------~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-~~~~~~------~--~~~ 157 (300)
T TIGR03866 96 LVTVID-IETR------KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-EIVDNV------L--VDQ 157 (300)
T ss_pred eEEEEE-CCCC------eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-eEEEEE------E--cCC
Confidence 999999 5331 112221 112346789999999999988 54 46778898743 332221 1 122
Q ss_pred CeEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C
Q 015363 284 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D 360 (408)
Q Consensus 284 ~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~ 360 (408)
.+..++|+|++ ++| +++..++.|++||+++++.. ..+..+... .... ......++|+|++++++.+ +
T Consensus 158 ~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~----~~~~-~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 158 RPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPG----VHPE-AVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred CccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecccc----cccc-cCCccceEECCCCCEEEEEcCC
Confidence 35679999999 666 45556999999999988543 222211000 0000 0123568899999986554 4
Q ss_pred CCeEEEEECCCCCCceeeee
Q 015363 361 YMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 361 d~~v~~wd~~~~~~~~~~~~ 380 (408)
++.|.+||+++ ++.+..+.
T Consensus 228 ~~~i~v~d~~~-~~~~~~~~ 246 (300)
T TIGR03866 228 ANRVAVVDAKT-YEVLDYLL 246 (300)
T ss_pred CCeEEEEECCC-CcEEEEEE
Confidence 57899999986 66665553
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.1e-20 Score=166.77 Aligned_cols=197 Identities=15% Similarity=0.275 Sum_probs=159.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..|.++..- ..+..+++|+.|-.+-+|.+........+..+.. .|. ++.|++....+
T Consensus 29 aav~~lk~~--~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--------pIe-------Sl~f~~~E~Ll------ 85 (825)
T KOG0267|consen 29 AAVGCLKIR--KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES--------PIE-------SLTFDTSERLL------ 85 (825)
T ss_pred hhhceeeee--ccceeeccCCCceeeccccccCCchhheeeccCC--------cce-------eeecCcchhhh------
Confidence 567777773 3367889999999999999876655554444432 343 57788887776
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (408)
++|..+|+|++|| +. ..+.++.+ .+|...+.++.|+|-+.++|.| .|..+++||.+. ..+...
T Consensus 86 ------aagsasgtiK~wD-le------eAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~- 149 (825)
T KOG0267|consen 86 ------AAGSASGTIKVWD-LE------EAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHT- 149 (825)
T ss_pred ------cccccCCceeeee-hh------hhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhc-cCceee-
Confidence 9999999999999 43 23444453 8999999999999999999998 899999999994 444443
Q ss_pred ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
+.+|...|..++|+|+| +++++|+.|.+++|||...|+.. ..|..| .+.+..+.|+|
T Consensus 150 ------~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~----~ef~~~------------e~~v~sle~hp 206 (825)
T KOG0267|consen 150 ------YKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS----KEFKSH------------EGKVQSLEFHP 206 (825)
T ss_pred ------ecCCcceeEEEeecCCC-ceeeccCCcceeeeecccccccc----cccccc------------cccccccccCc
Confidence 56799999999999999 99999999999999999999765 677767 47899999999
Q ss_pred CCCEEEEeC-CCeEEEEECCC
Q 015363 352 NGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 352 dg~~l~s~~-d~~v~~wd~~~ 371 (408)
..-++++|+ |++|++||+++
T Consensus 207 ~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 207 LEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred hhhhhccCCCCceeeeeccce
Confidence 988888885 89999999986
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8.3e-20 Score=152.54 Aligned_cols=211 Identities=16% Similarity=0.275 Sum_probs=158.2
Q ss_pred eeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
.+|++.|.+++|+.. ...||+||.|.+|++||+.++++ ...+..|.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p-----------------------~~s~~~~~---------- 286 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP-----------------------KSSITHHG---------- 286 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc-----------------------ceehhhcC----------
Confidence 469999999999986 56899999999999999998875 35566677
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|.++.|+|.. .+.|++|+.|++|.+.|.+... .-...+. .+.+- .++|.|.....
T Consensus 287 --k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---------~g~VE-------kv~w~~~se~~--- 344 (463)
T KOG0270|consen 287 --KKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKF---------DGEVE-------KVAWDPHSENS--- 344 (463)
T ss_pred --CceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEe---------ccceE-------EEEecCCCcee---
Confidence 779999999754 4699999999999999998421 1111111 22233 57787777654
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCce
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
++++..||.|+-+| ++.. +++...+ .+|...|.++++++.- .+++++ .|+.|++|++......
T Consensus 345 --------f~~~tddG~v~~~D-~R~~-----~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 345 --------FFVSTDDGTVYYFD-IRNP-----GKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred --------EEEecCCceEEeee-cCCC-----CCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 58889999999999 5543 2566665 8999999999999876 456667 8999999999843322
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
... ...+ .-+...|.++.|+-..++|.|+..+.+++||+.+...+
T Consensus 410 ~v~----~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 410 SVK----EHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccc----cccc--cccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 110 0001 12336788899998789999999999999999887544
No 151
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=3.8e-19 Score=146.51 Aligned_cols=254 Identities=16% Similarity=0.278 Sum_probs=168.3
Q ss_pred eeeecccCcCcccceeeccceEEEEECC-----CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363 18 KFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (408)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (408)
||..+||.....+.--..=.|+.+.|.. +.++||. +|+..++.. ...-++...+. ..++
T Consensus 10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGga--f~ViPl~k~Gr---~d~~--- 73 (472)
T KOG0303|consen 10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGA--FLVIPLVKTGR---MDAS--- 73 (472)
T ss_pred hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcc--eeecccccccc---cCCC---
Confidence 5667787665544444445677777754 2344443 455444421 11111111111 1111
Q ss_pred eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecC
Q 015363 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (408)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (408)
.-.+.||+ ++|.+++|+|..| ..+|+|+.|.+|.||.+-.+.....+
T Consensus 74 ~P~v~GHt------------~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~l-------------------- 120 (472)
T KOG0303|consen 74 YPLVCGHT------------APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDL-------------------- 120 (472)
T ss_pred CCCccCcc------------ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCc--------------------
Confidence 12467888 8899999999644 68999999999999998755432211
Q ss_pred CceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe
Q 015363 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA 251 (408)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~ 251 (408)
..++.. +.+|...|.-++|+|.- +.|+++
T Consensus 121 -------------------------------------------------tepvv~-L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 121 -------------------------------------------------TEPVVE-LYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred -------------------------------------------------ccceEE-EeecceeEEEEeecccchhhHhhc
Confidence 111222 48999999999999985 667776
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (408)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (408)
.|.+|.+|++.++...+. +. |...|++++|+-+| .+|++.+.|..|+|||.++++.+ ..-.+|+.
T Consensus 151 g~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v----~e~~~heG 216 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVV----SEGVAHEG 216 (472)
T ss_pred cCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEe----eecccccC
Confidence 899999999997666654 34 99999999999999 99999999999999999999776 33345532
Q ss_pred CCCccccccccceeEEEEEccCCCEEEEe----CCCeEEEEECCCCCCceeeeeecccccceEEecCCCe
Q 015363 331 PGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNY 396 (408)
Q Consensus 331 ~~~~~~~~~h~~~i~~~~~spdg~~l~s~----~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (408)
..-..+.|-.+|.++.+| ++..+-+||-.+-.+++....-... .-.+.-||+.+
T Consensus 217 -----------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~d 274 (472)
T KOG0303|consen 217 -----------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPD 274 (472)
T ss_pred -----------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCC
Confidence 234567788899977676 4689999998875455433333222 22333355555
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=5.2e-18 Score=149.38 Aligned_cols=287 Identities=15% Similarity=0.210 Sum_probs=184.0
Q ss_pred ceeeccceEEEEECCCCC---eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363 31 EVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~---~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (408)
..+|..+|+|+.|-|+.+ ++++|+.|++|.+|.+.... ...+..+++|.
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~---------------------~~~i~~~~g~~------- 101 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY---------------------LIKIYTIQGHC------- 101 (764)
T ss_pred ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehh---------------------eEEEEeecCcc-------
Confidence 457999999999999877 89999999999999988432 23566778877
Q ss_pred ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE--EEeccCCCCc-----ccCC-CC-CeEeecCCceeeE
Q 015363 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK--KVFDWNVHPE-----KAAG-NG-PIFGSHVSAIPKS 178 (408)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~-----~~~~-~~-~v~~~~~~~~~~~ 178 (408)
+.++++.-. -....+...|+++.+||.+..+.. ..+....... ...+ ++ .+.+.+.....+.
T Consensus 102 -------~~~~cv~a~--~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~ 172 (764)
T KOG1063|consen 102 -------KECVCVVAR--SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVD 172 (764)
T ss_pred -------eeEEEEEee--eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEE
Confidence 445555311 112333379999999999665522 2221111110 1111 11 1222222222232
Q ss_pred EccCC----Ceeeccccccc-------------CccccCCCCCceeeeceeeeccccc----------cccc-------c
Q 015363 179 YMANG----GCGERNFGCAS-------------NDSSFPPGGVSSLRLPVVVTSQETN----------LVAG-------C 224 (408)
Q Consensus 179 ~~~~~----~~l~~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~-------~ 224 (408)
.-..+ +....+.|+.+ ..++++++.|..|++|.+.-..+.. .... .
T Consensus 173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 22222 33344455552 3568899999999999943222110 0000 0
Q ss_pred c------eeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce-eeEeecCCCcccCCcCCeEEEEEcCCCCc
Q 015363 225 R------RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCN 296 (408)
Q Consensus 225 ~------~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 296 (408)
. ..++.+|..+|+++.|+|.+..|+++ .|.++.+|.-....-. ...+. -..+.+.........|+|++ +
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR--lGe~gg~a~GF~g~lw~~n~-~ 329 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR--LGEVGGSAGGFWGGLWSPNS-N 329 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE--eecccccccceeeEEEcCCC-C
Confidence 1 12236999999999999999777777 9999999988743222 22221 12233445568899999999 8
Q ss_pred eEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (408)
Q Consensus 297 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~ 370 (408)
.+++-+..|-.++|........ + ......||...|.+++|+|.|.||++.+ |.+-++|---
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w-----~--------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFW-----T--------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred EEEEecccCcEEEEeccCccce-----e--------eccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 8999899999999983332111 1 1223567789999999999999999986 8899998664
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1e-19 Score=168.86 Aligned_cols=223 Identities=18% Similarity=0.264 Sum_probs=158.4
Q ss_pred ccceeEEEEeecCCCc--EEEEEeCCCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 112 EEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~--~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
..+-+.++|.+..++. +||.|..||.|.+||...- ....++.. .....|.|. .+.|++....+
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~-------gLDfN~~q~nl 131 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVL-------GLDFNPFQGNL 131 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh-----hcccCCcee-------eeeccccCCce
Confidence 3668899998654332 5888899999999998752 11111111 111245566 68888887733
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEe-cCCeEEEEeCCCC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEIS 264 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~iwd~~~~ 264 (408)
+++|+.+|.|.+|| +.+.+...... .......|.+++|+.. ..+|+++ .+|++.|||++..
T Consensus 132 -----------LASGa~~geI~iWD-lnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 132 -----------LASGADDGEILIWD-LNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred -----------eeccCCCCcEEEec-cCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 49999999999999 66644322211 1234477999999976 4677778 8999999999966
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (408)
+..+++- .......+..++|+|++...+++++.|. .|.+||+|... .+++++++| .
T Consensus 195 ~pii~ls------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H------------~ 253 (1049)
T KOG0307|consen 195 KPIIKLS------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGH------------Q 253 (1049)
T ss_pred Ccccccc------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---Cchhhhccc------------c
Confidence 5555431 1222245778999999977788777753 79999999654 556777777 4
Q ss_pred ceeEEEEEccCC-CEEEEe-CCCeEEEEECCCCCCceeeeeecccc
Q 015363 342 ASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHL 385 (408)
Q Consensus 342 ~~i~~~~~spdg-~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~ 385 (408)
..|.++.|++.+ .+|+++ .|+.|.+|+.++ ++.+..+......
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW 298 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNW 298 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcc
Confidence 789999999965 788877 489999999998 7888888764443
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=6.2e-19 Score=147.91 Aligned_cols=209 Identities=14% Similarity=0.231 Sum_probs=149.2
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc--EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
.+|++++|+|..+-+++|+|..-|.|-+||+.+.+ ...+..++.+ .++|. ++.|+|...-.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h------s~~Vs-------~l~F~P~n~s~---- 249 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH------SGPVS-------GLKFSPANTSQ---- 249 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC------Ccccc-------ceEecCCChhh----
Confidence 78999999999887899999999999999996322 1222222221 12232 56677654322
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+++.+.||+|++-| +.+........ .......+.++.|+.+...++.+ .=|...+||+++.+....
T Consensus 250 -------i~ssSyDGtiR~~D-~~~~i~e~v~s-----~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 250 -------IYSSSYDGTIRLQD-FEGNISEEVLS-----LDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred -------eeeeccCceeeeee-ecchhhHHHhh-----cCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch
Confidence 48899999999988 54422111111 11234567788888887777777 666999999998877655
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
. +.-|...|++++++|..+.+||+++.|++.+|||+|....-..|+-. ...|...|.++.|
T Consensus 317 ~-------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls------------t~~HrrsV~sAyF 377 (498)
T KOG4328|consen 317 N-------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS------------TLPHRRSVNSAYF 377 (498)
T ss_pred h-------hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee------------cccccceeeeeEE
Confidence 4 45678899999999999999999999999999999975332111111 2345689999999
Q ss_pred ccCCCEEEEe-CCCeEEEEECC
Q 015363 350 ARNGRHILSR-DYMTLKLWDIN 370 (408)
Q Consensus 350 spdg~~l~s~-~d~~v~~wd~~ 370 (408)
||++-.|++. -|..|+|||..
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cCCCCceEeeccCCceEEeecc
Confidence 9977667765 58999999994
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.4e-19 Score=150.98 Aligned_cols=221 Identities=13% Similarity=0.158 Sum_probs=167.1
Q ss_pred EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (408)
Q Consensus 39 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (408)
.|++......++++|+..++|+|||+....+ ...+.+|. +.|++|
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-----------------------hr~lkdh~------------stvt~v 127 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLI-----------------------HRFLKDHQ------------STVTYV 127 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHH-----------------------hhhccCCc------------ceeEEE
Confidence 3444444458999999999999999885432 34577888 789999
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (408)
Q Consensus 119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (408)
.+. .++.+||+++..|.|.|..+.++.....+...... .+. -+.+++..+.+ +
T Consensus 128 ~YN--~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-------svR-------ll~ys~skr~l-----------L 180 (673)
T KOG4378|consen 128 DYN--NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-------SVR-------LLRYSPSKRFL-----------L 180 (673)
T ss_pred Eec--CCcceeEEeccCCcEEEEecccCccccceecCCCC-------eEE-------Eeeccccccee-----------e
Confidence 995 55789999999999999999988766555443211 121 36777777765 6
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCC
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 276 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (408)
.+++.+|.|.+|| +..+. +.......|..+...|+|+|....|++. .|..|.+||++. +.....
T Consensus 181 ~~asd~G~VtlwD-v~g~s------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~------ 246 (673)
T KOG4378|consen 181 SIASDKGAVTLWD-VQGMS------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QASTDR------ 246 (673)
T ss_pred EeeccCCeEEEEe-ccCCC------cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-ccccce------
Confidence 7889999999999 55432 2333357899999999999988766554 899999999993 333222
Q ss_pred cccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (408)
Q Consensus 277 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg 353 (408)
+ ....+...++|.++| .+|++|...|.|..||+|..+ .|+.+...| ...|++++|-|..
T Consensus 247 -l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k---~Pv~v~sah------------~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 247 -L-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK---APVAVRSAH------------DASVTRVAFQPSP 305 (673)
T ss_pred -e-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCC---CCceEeeec------------ccceeEEEeeecc
Confidence 1 135667899999999 999999999999999999765 456776666 4679999998764
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.8e-18 Score=147.98 Aligned_cols=240 Identities=16% Similarity=0.198 Sum_probs=173.2
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
..|.+++|+.. ...||.+-.||.|-+|++..+= +..++.++. ++.+- .++|.+.++.
T Consensus 26 s~I~slA~s~k--S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~-------drsIE-------~L~W~e~~RL------ 83 (691)
T KOG2048|consen 26 SEIVSLAYSHK--SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE-------DRSIE-------SLAWAEGGRL------ 83 (691)
T ss_pred cceEEEEEecc--CCceeeeccCCcEEEEccCCCceeeEEEecCC-------CCcee-------eEEEccCCeE------
Confidence 77999999754 5589999999999999999753 234444432 34454 6899966664
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
|+.+.+|.|.-|| +... +++.. .....+.|.+++.+|.+..++.| +||.+..++.....-....
T Consensus 84 -------FS~g~sg~i~EwD-l~~l------k~~~~-~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 84 -------FSSGLSGSITEWD-LHTL------KQKYN-IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR 148 (691)
T ss_pred -------EeecCCceEEEEe-cccC------ceeEE-ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe
Confidence 9999999999999 5432 22233 25666889999999999999999 9998887877733222222
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
.+.-..+.|.+++|+|++ ..++.|+.||.|++||..++..+.. .+.+-.... .+-..-|+++.|-
T Consensus 149 ------~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~--~~~~~d~l~------k~~~~iVWSv~~L 213 (691)
T KOG2048|consen 149 ------SLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHI--ITMQLDRLS------KREPTIVWSVLFL 213 (691)
T ss_pred ------ecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEE--eeecccccc------cCCceEEEEEEEe
Confidence 244456889999999999 8899999999999999999865420 111100000 0012457888888
Q ss_pred cCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeee---eeeceeee
Q 015363 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM---GLDNIHTL 406 (408)
Q Consensus 351 pdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~ 406 (408)
.|+ .|++|+ -|+|.+||... +.+++.+..|.+-..++..--+++.+ ++|+-...
T Consensus 214 rd~-tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 214 RDS-TIASGDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred ecC-cEEEecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence 654 678886 49999999998 89999999999988888866665532 44554433
No 157
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=2.3e-18 Score=136.50 Aligned_cols=255 Identities=11% Similarity=0.161 Sum_probs=177.4
Q ss_pred eeeccceEEEEECCCC-----CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc
Q 015363 32 VQEVDIISAIEFDKSG-----DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~-----~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (408)
..|.-+++.+.|.|+. ++|||.+ ..+|||.+...+.. .++...+..+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~-------------------~~~~~~L~~~k------ 145 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESR-------------------VELQSVLNNNK------ 145 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCc-------------------eehhhhhccCc------
Confidence 4688899999999985 3677764 37999998754321 11111222211
Q ss_pred cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE---EEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (408)
Q Consensus 107 ~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (408)
.-+..+++++..|+.- +-.++.+++-|-+..|||++++.. +..+-.| +..|+ .++|...+
T Consensus 146 -ns~~~aPlTSFDWne~-dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH--------DKEV~-------DIaf~~~s 208 (364)
T KOG0290|consen 146 -NSEFCAPLTSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH--------DKEVY-------DIAFLKGS 208 (364)
T ss_pred -ccccCCcccccccccC-CcceeEeecccCeEEEEEEeeccccceeeEEEec--------Cccee-------EEEeccCc
Confidence 2233478999999853 345899999999999999998732 2222222 33355 78888876
Q ss_pred CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe--cCCeEEEEe
Q 015363 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA--DDLRINLWN 260 (408)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~--~d~~i~iwd 260 (408)
..+ +++.+.||.++++| ++..+.... +..- .....+...++|+++. +++|+- +...|.+.|
T Consensus 209 ~~~-----------FASvgaDGSvRmFD-LR~leHSTI---IYE~-p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 209 RDV-----------FASVGADGSVRMFD-LRSLEHSTI---IYED-PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred cce-----------EEEecCCCcEEEEE-ecccccceE---EecC-CCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 655 68899999999999 766444221 1111 2224567788999866 677764 778999999
Q ss_pred CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce--ecccccccccccCCCCccccc
Q 015363 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFT 338 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 338 (408)
++.....+. ++.+|...|..++|.|..+..+++++.|..+.+||+.+.-. ...|+-.+.
T Consensus 273 iR~P~tpva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~------------ 333 (364)
T KOG0290|consen 273 IRVPCTPVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT------------ 333 (364)
T ss_pred ecCCCccee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh------------
Confidence 997766553 48899999999999999889999999999999999986532 111222222
Q ss_pred cccceeEEEEEcc-CCCEEEEeCCCeEEE
Q 015363 339 EIIASISDIKFAR-NGRHILSRDYMTLKL 366 (408)
Q Consensus 339 ~h~~~i~~~~~sp-dg~~l~s~~d~~v~~ 366 (408)
..+.|+.+.|++ .+.+|+.+..+++.+
T Consensus 334 -a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 334 -AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred -ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 236799999996 578999887656554
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=4.4e-19 Score=138.63 Aligned_cols=277 Identities=12% Similarity=0.133 Sum_probs=178.6
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
..|.+.|+++.|-.+++ |.+|..-|.|.+|.+.+.+.. ..++.+..
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g~---------- 56 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFGR---------- 56 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccc-----------------------hhhhhhcc----------
Confidence 37889999999988776 899999999999999887642 23442221
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCC-----c------------ccCCCCCeEee----
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP-----E------------KAAGNGPIFGS---- 170 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~------------~~~~~~~v~~~---- 170 (408)
..|+.+.-.|. ..+.+-++|..+.+|++..+....+.....+. . ...+.......
T Consensus 57 -~~it~lq~~p~---d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 57 -LFITNLQSIPN---DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred -ceeeceeecCC---cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 55777776543 47889999999999999875443332211111 0 00010000000
Q ss_pred cCCceeeEEccCCC------ee--ecccccccCccccCCCCCceeeeceeeeccccc----cccccceeeccccccceEE
Q 015363 171 HVSAIPKSYMANGG------CG--ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN----LVAGCRRIYAHAHDYHINS 238 (408)
Q Consensus 171 ~~~~~~~~~~~~~~------~l--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~ 238 (408)
...++.+...++.. .+ ..-.......++++|.++|.+.+|| +...+.. ...+.... ...|..+|.+
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd-~S~~~~~~~~~~~~kv~~~-~ash~qpvls 210 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD-LSTGDKIIQLPQSSKVESP-NASHKQPVLS 210 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEE-ccCCceeeccccccccccc-hhhccCccee
Confidence 01111122221111 00 0001122234578899999999999 6554222 11121222 2678899999
Q ss_pred EEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (408)
Q Consensus 239 i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 317 (408)
+.+.+.-..=++| .+..+..|+++......++- ..+.-....|..+...||+ +++|+++.|++||+|..++...
T Consensus 211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~----~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR----KEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred eeechhhcCCcCCCccccceeeeeccccCccccc----ceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCCc
Confidence 9998765555555 67778889887543322221 1122234557889999999 9999999999999999998844
Q ss_pred ecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI 369 (408)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~ 369 (408)
+..++-| ++.|++++|+|+...+|+++ |.+|.+|++
T Consensus 286 ----LAVLkyH------------sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 ----LAVLKYH------------SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ----hhhhhhh------------hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 3666666 58999999999999999986 799999986
No 159
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=154.63 Aligned_cols=195 Identities=18% Similarity=0.281 Sum_probs=154.7
Q ss_pred cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeee---ccCCcccccccccccc
Q 015363 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF---QSHEPEFDYLKSLEIE 112 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~h~~~~~~~~~~~~~ 112 (408)
..++|++.++-|++.+.|+..|.|.+|+++.+... ..| ..|.
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-----------------------~sf~~~~ah~------------ 493 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-----------------------KSFGDSPAHK------------ 493 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeee-----------------------cccccCcccc------------
Confidence 67899999999999999999999999999887532 223 3565
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
.+|++++. +.-++.+++++.+|.+++||......+.....
T Consensus 494 ~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-------------------------------------- 533 (910)
T KOG1539|consen 494 GEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-------------------------------------- 533 (910)
T ss_pred CceeEEEe--cCCCceEEEccCcceEEEEecCCcceeeeecc--------------------------------------
Confidence 77999998 55577899999999999999987764332111
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (408)
+ ..+.++..+.....++.+ +|-.|+++|..+.+ ..+
T Consensus 534 --------------------------------------~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-vvR-- 570 (910)
T KOG1539|consen 534 --------------------------------------G--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-VVR-- 570 (910)
T ss_pred --------------------------------------C--CCcceeeeeehhhhhhhhcCceeEEEEEchhhh-hhH--
Confidence 0 234455666667788888 99999999998433 332
Q ss_pred ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
.+.+|...|+.++||||| ++|++++.|++|++||+.++..++ .+.-. .+...+.|||
T Consensus 571 -----~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lID----~~~vd-------------~~~~sls~SP 627 (910)
T KOG1539|consen 571 -----EFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLID----GLLVD-------------SPCTSLSFSP 627 (910)
T ss_pred -----HhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcceee----eEecC-------------CcceeeEECC
Confidence 378999999999999999 999999999999999999997663 22222 4688999999
Q ss_pred CCCEEEEeC-C-CeEEEEECCC
Q 015363 352 NGRHILSRD-Y-MTLKLWDINM 371 (408)
Q Consensus 352 dg~~l~s~~-d-~~v~~wd~~~ 371 (408)
+|.+||+.. | ..|++|--..
T Consensus 628 ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCEEEEEEecCceEEEEEchh
Confidence 999999994 6 8999997544
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=129.19 Aligned_cols=250 Identities=15% Similarity=0.156 Sum_probs=167.0
Q ss_pred cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (408)
..|.+-+++|.+++|+.|..+|.|-+..++..... -+.+|.-..+-.+++|. .+|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 45677789999999999999999999998754321 11222333445568998 789
Q ss_pred eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (408)
..++|. ..+|++|+ ||.|+-|..+......-
T Consensus 66 y~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~-------------------------------------------- 96 (325)
T KOG0649|consen 66 YYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLA-------------------------------------------- 96 (325)
T ss_pred eeeeee----hhheeecc-CceEEEeeehhhhhhcc--------------------------------------------
Confidence 999995 23666655 59999998865432110
Q ss_pred ccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecC
Q 015363 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (408)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (408)
.-++|. +.. +.+.- .-.-..|+++-..|..+.++.+ .|+.++-||++ .++....
T Consensus 97 ----------~K~lwe-~~~--------P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~---- 151 (325)
T KOG0649|consen 97 ----------TKRLWE-VKI--------PMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE---- 151 (325)
T ss_pred ----------chhhhh-hcC--------ccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE----
Confidence 001222 110 00000 0111458889999887766666 99999999999 4444443
Q ss_pred CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc-cceeEEEEEccCC
Q 015363 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI-IASISDIKFARNG 353 (408)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~spdg 353 (408)
+.+|.+.+.++.-.... ..+.+|+.||++++||+++++.+ +.++..+.+++ ...| ..+|.+++-+ .
T Consensus 152 ---~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~yk~~~~---lRp~~g~wigala~~--e 218 (325)
T KOG0649|consen 152 ---YRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPYKNPNL---LRPDWGKWIGALAVN--E 218 (325)
T ss_pred ---EcCCcceeeeeeecccC-cceeecCCCccEEEEecccccee----EEeccccChhh---cCcccCceeEEEecc--C
Confidence 78999999999985555 56889999999999999999765 44444332211 2222 2467777664 5
Q ss_pred CEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeee
Q 015363 354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGL 400 (408)
Q Consensus 354 ~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (408)
.+|++|....+.+|+++. .++..+|.-. .+...+.|+++.++..
T Consensus 219 dWlvCGgGp~lslwhLrs-se~t~vfpip--a~v~~v~F~~d~vl~~ 262 (325)
T KOG0649|consen 219 DWLVCGGGPKLSLWHLRS-SESTCVFPIP--ARVHLVDFVDDCVLIG 262 (325)
T ss_pred ceEEecCCCceeEEeccC-CCceEEEecc--cceeEeeeecceEEEe
Confidence 799999888999999997 6887777653 2334444555555444
No 161
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.5e-17 Score=151.16 Aligned_cols=234 Identities=13% Similarity=0.179 Sum_probs=169.9
Q ss_pred ccee-eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 30 EEVQ-EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~-h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
+.+. +...|.+++.. +.+|++|+.+++|.+|.+..++.. ..+..-+
T Consensus 50 ~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~-----------------------~iL~Rft-------- 96 (933)
T KOG1274|consen 50 ETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED-----------------------TILARFT-------- 96 (933)
T ss_pred chhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc-----------------------ceeeeee--------
Confidence 4455 78888888864 558999999999999998877531 1112222
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
-++++++++ .+|+++|.|+.|-.|++-++........+..+.. +|. .+.++|++..+
T Consensus 97 ----lp~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--------pVl-------~l~~~p~~~fL-- 153 (933)
T KOG1274|consen 97 ----LPIRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--------PVL-------QLSYDPKGNFL-- 153 (933)
T ss_pred ----ccceEEEEe--cCCcEEEeecCceeEEEEeccccchheeecccCC--------cee-------eeeEcCCCCEE--
Confidence 568999995 6699999999999999999998877777777643 455 78999999998
Q ss_pred ccccccCccccCCCCCceeeeceeeecccccccccc-ceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
++.+.||.|++|+ +........... .+..-......+..++|+|++..|+.. .|+.|++|+......
T Consensus 154 ----------Avss~dG~v~iw~-~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 154 ----------AVSSCDGKVQIWD-LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred ----------EEEecCceEEEEE-cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 9999999999999 554222111111 011101113456778999997666665 999999999986555
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
.+.+ ....+...+..++|+|+| .+||+++.||.|.|||..+-. + |+. ...|.+
T Consensus 223 ~f~L------r~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~------~----~~~----------~~~Vc~ 275 (933)
T KOG1274|consen 223 QFKL------RDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE------R----HEF----------KRAVCC 275 (933)
T ss_pred heee------cccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch------h----ccc----------cceeEE
Confidence 4443 123344558999999999 999999999999999998732 1 211 257999
Q ss_pred EEEccCCCEEE
Q 015363 347 IKFARNGRHIL 357 (408)
Q Consensus 347 ~~~spdg~~l~ 357 (408)
++|.|+..-|-
T Consensus 276 ~aw~p~~n~it 286 (933)
T KOG1274|consen 276 EAWKPNANAIT 286 (933)
T ss_pred EecCCCCCeeE
Confidence 99999876543
No 162
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2e-18 Score=148.26 Aligned_cols=249 Identities=20% Similarity=0.254 Sum_probs=163.1
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+..+|.+.|+|++|+.+|.+|++|+.|-.+.|||.-..+. +...-.+|.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt--------- 93 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT--------- 93 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc---------
Confidence 5678999999999999999999999999999999653321 122346787
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|.++.|.|..++..+++|+.|..|+++|+...+....-..
T Consensus 94 ---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~----------------------------------- 135 (758)
T KOG1310|consen 94 ---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG----------------------------------- 135 (758)
T ss_pred ---cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----------------------------------
Confidence 889999999998889999999999999999985432110000
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCce
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
..-+.+. ...|...|..++..|++ ..|.++ .||+|+-+|++....+
T Consensus 136 -------------~~~~~~~-------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 136 -------------MEETTRC-------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred -------------ccchhhh-------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 0001111 25677888889999998 666677 9999999999964443
Q ss_pred eeEeec--CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccc--cccccC-CCCcccccccc-
Q 015363 268 FNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL--FEEQEA-PGTRSFFTEII- 341 (408)
Q Consensus 268 ~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~h~- 341 (408)
..-... ....+...--...++..+|..+.+||+|+.|-..++||.+......+.-.+ ...... .-...+..+|.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 221100 000111122345789999999999999999999999996532110000000 000000 00011111221
Q ss_pred ----------ceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeee
Q 015363 342 ----------ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 342 ----------~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~ 379 (408)
..++-++|+|+|.-|+.. +...|+++|+.....+...+
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 125678999999866655 44599999999754444433
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.9e-18 Score=136.70 Aligned_cols=203 Identities=17% Similarity=0.302 Sum_probs=147.7
Q ss_pred CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (408)
Q Consensus 48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 127 (408)
..+|++...|.|+|||..++. .+..|+++. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----------------------hhheecCCC------------CcccceEEecCCCCC
Confidence 568999999999999988765 356788888 668999997532345
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (408)
Q Consensus 128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (408)
.+.+|+.||+|++||++.......+....++
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~------------------------------------------------- 116 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWTQQS------------------------------------------------- 116 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheeccCCC-------------------------------------------------
Confidence 7999999999999999876544322221110
Q ss_pred eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-----cCCeEEEEeCCCCCceeeEeecCCCcccCCc
Q 015363 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (408)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
..+..+++.+..++++++| .+-.|.+||++...+.+..+ ...|.
T Consensus 117 -------------------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~ 165 (376)
T KOG1188|consen 117 -------------------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHN 165 (376)
T ss_pred -------------------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhcc
Confidence 1344566666566677765 47789999999777644432 57899
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC-CEEEEe-C
Q 015363 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSR-D 360 (408)
Q Consensus 283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~-~ 360 (408)
..|++++|+|..+++|++|+.||.|.|||++..... .++...-.+ .+.|..+.|+.++ +.|.+- .
T Consensus 166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee-DaL~~viN~------------~sSI~~igw~~~~ykrI~clTH 232 (376)
T KOG1188|consen 166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE-DALLHVINH------------GSSIHLIGWLSKKYKRIMCLTH 232 (376)
T ss_pred CcceeEEecCCCCCeEEeecccceEEeeecCCCcch-hhHHHhhcc------------cceeeeeeeecCCcceEEEEEc
Confidence 999999999999999999999999999999876332 222222222 3679999999887 234444 4
Q ss_pred CCeEEEEECCCCCCceeee
Q 015363 361 YMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 361 d~~v~~wd~~~~~~~~~~~ 379 (408)
..+..+|+++. +.+...+
T Consensus 233 ~Etf~~~ele~-~~~~~~~ 250 (376)
T KOG1188|consen 233 METFAIYELED-GSEETWL 250 (376)
T ss_pred cCceeEEEccC-CChhhcc
Confidence 68999999986 4544433
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=2.6e-18 Score=138.42 Aligned_cols=260 Identities=18% Similarity=0.246 Sum_probs=178.9
Q ss_pred eeccceEEEEECCC----CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 33 ~h~~~V~~~~~s~~----~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
.|...-..++|+-+ ..+||.|+.-|.|+|.|+..++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence 36666778888754 34899999999999999987764 35688888
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..|+.+.++|... +++++++.|.+|++|++++..++.++-+-... .+.|. ++.|+++|..+
T Consensus 136 ----~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH-----rdeVL-------SvD~~~~gd~i-- 196 (385)
T KOG1034|consen 136 ----GSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH-----RDEVL-------SVDFSLDGDRI-- 196 (385)
T ss_pred ----ccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccc-----cCcEE-------EEEEcCCCCee--
Confidence 6799999998744 59999999999999999999999887654322 33455 79999999998
Q ss_pred ccccccCccccCCCCCceeeeceeeecccccc------------cc-------cccee--eccccccceEEEEeCCCCCE
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNL------------VA-------GCRRI--YAHAHDYHINSISNNSDGET 247 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~-------~~~~~--~~~~~~~~v~~i~~~~~~~~ 247 (408)
++++.|.++++|+ +...+... .. ..... ....|...|.|+.|- |++
T Consensus 197 ----------~ScGmDhslk~W~-l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 197 ----------ASCGMDHSLKLWR-LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred ----------eccCCcceEEEEe-cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 9999999999999 54211110 00 00000 113455556666554 466
Q ss_pred EEEe-cCCeEEEEeCCCCCceeeEeecCCC--------cccCCcCCeEE--EEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 248 FISA-DDLRINLWNLEISNQSFNIVDVKPA--------NMEDLTEVITS--AEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 248 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~--~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
+++= -++.|..|....-++.+. ++++. ++.-....++- .+|+|-+ +.||.|...|.|.+||++...
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~--~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIH--NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred eeecccCceEEEEecchhhhhhh--ccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCC
Confidence 7764 678999998732222211 11111 12222233443 4566777 899999999999999999765
Q ss_pred eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECC
Q 015363 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDIN 370 (408)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~ 370 (408)
.. ...++..+. ....|...+||.||.+|+.. +|++|.-||..
T Consensus 341 p~--~~ttl~~s~----------~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 341 PP--KCTTLTHSK----------SGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred Cc--cCceEEecc----------ccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 32 112222221 13679999999999988876 67999999864
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.1e-17 Score=137.92 Aligned_cols=229 Identities=13% Similarity=0.222 Sum_probs=166.1
Q ss_pred ccceeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363 29 GEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (408)
Q Consensus 29 ~~~~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (408)
+..-+|+++|..++|+| +...||+||.|.+|.||++..+... .+-.+.+..+.+|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------~~ltepvv~L~gH~------- 131 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------RDLTEPVVELYGHQ------- 131 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------cCcccceEEEeecc-------
Confidence 34568999999999999 4678999999999999998766532 22334667889998
Q ss_pred ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
.+|.-|.|+|... +.|++++.|++|.+|++.+++....+. | ...++ ++.|+.+|..+
T Consensus 132 -----rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-h--------pd~i~-------S~sfn~dGs~l- 188 (472)
T KOG0303|consen 132 -----RRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-H--------PDMVY-------SMSFNRDGSLL- 188 (472)
T ss_pred -----eeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-C--------CCeEE-------EEEeccCCcee-
Confidence 7899999999765 489999999999999999998777665 2 23455 78999999998
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeecccccc-ceEEEEeCCCCCEEEEe----cCCeEEEEeCC
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA----DDLRINLWNLE 262 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~----~d~~i~iwd~~ 262 (408)
++...|+.|++|| ....+....+ .+|.+ .-..+-|-.++.++.+| ++..+-+||..
T Consensus 189 -----------~TtckDKkvRv~d-pr~~~~v~e~-------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 189 -----------CTTCKDKKVRVID-PRRGTVVSEG-------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred -----------eeecccceeEEEc-CCCCcEeeec-------ccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 9999999999999 5443322221 33432 22344577788877776 58999999988
Q ss_pred CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (408)
.-...+...+ +.. ...|.---|.|+..-+.++|-.|+.|+-|.+.........+.+|...
T Consensus 250 nl~eP~~~~e-----lDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 250 NLEEPIALQE-----LDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred cccCcceeEE-----ecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6555544322 332 45566677888884445566679999999998765332333444433
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=139.77 Aligned_cols=242 Identities=15% Similarity=0.183 Sum_probs=171.4
Q ss_pred eccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccc--cccccc-cccCCCccceeeeeccCCcccccc---
Q 015363 34 EVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRD--LEMMDY-SMSRHPEFRYKTEFQSHEPEFDYL--- 106 (408)
Q Consensus 34 h~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~-~~~~~p~~~~~~~~~~h~~~~~~~--- 106 (408)
...+|.+..|.|+|. .+++++...-...||+.+.+.. ...+. ++.... ....+|...++ .+.|+.+-+..+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~fi-a~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSNFI-AIAGNNGHIHLLHAK 333 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCCeE-EEcccCceEEeehhh
Confidence 357899999999998 8999999999999999887643 11111 121111 22334444433 355555544433
Q ss_pred -----cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363 107 -----KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (408)
Q Consensus 107 -----~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (408)
.++..++.|..++|+ .+++.|++++.+|.|.+||++...++..+.-. |.+. ++.++.++
T Consensus 334 T~eli~s~KieG~v~~~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~---------G~v~-----gts~~~S~ 397 (514)
T KOG2055|consen 334 TKELITSFKIEGVVSDFTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDD---------GSVH-----GTSLCISL 397 (514)
T ss_pred hhhhhheeeeccEEeeEEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeec---------Cccc-----eeeeeecC
Confidence 345788999999996 56889999999999999999999877766543 2232 23678889
Q ss_pred CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---cCCeEEE
Q 015363 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINL 258 (408)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~i 258 (408)
+|.++ ++|+..|.|.+|| ....-.....++++.+ ..-...|++++|+|+.++||.+ .+..+++
T Consensus 398 ng~yl------------A~GS~~GiVNIYd-~~s~~~s~~PkPik~~-dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 398 NGSYL------------ATGSDSGIVNIYD-GNSCFASTNPKPIKTV-DNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred CCceE------------EeccCcceEEEec-cchhhccCCCCchhhh-hhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 99887 9999999999999 4433222333444443 4445679999999999999976 5788888
Q ss_pred EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
-.+. +...+.-++ +....-+.|+||+|+|.+ .+||.|..+|++.+|.+.
T Consensus 464 VHvP-S~TVFsNfP----~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 464 VHVP-SCTVFSNFP----TSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred Eecc-ceeeeccCC----CCCCcccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence 8876 333332211 123334668999999998 899999999999999864
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=6.4e-17 Score=128.40 Aligned_cols=284 Identities=15% Similarity=0.240 Sum_probs=184.0
Q ss_pred cceEEEEECC--C-CCeEEEeec----CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 36 DIISAIEFDK--S-GDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 36 ~~V~~~~~s~--~-~~~l~sg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
=.+.++.|+. + +.+||.|+. .+.|.|-.++.... ++....+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--------------------------------e~~~~a~ 92 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--------------------------------ELVEDAN 92 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--------------------------------ceeccCC
Confidence 4578999984 3 558999973 45677766553221 1111122
Q ss_pred cccccceeEEEEeecCCCc---EEEEEeCCCeEEEEEcCCC--cEEEE--eccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363 109 LEIEEKINKIRWCQSANSA---LYLLSTNDKTIKLWKVQEK--KVKKV--FDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~---~l~~~~~d~~i~vwd~~~~--~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (408)
+++.-+++.+.|.|++.|. +||++ +..+|+|.+... +.... +..+..... .+++. +..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~---~aPlT-------SFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEF---CAPLT-------SFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCccccc---CCccc-------cccccc
Confidence 3334789999999986543 34443 348999998743 22211 111111100 11111 334443
Q ss_pred -CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEE
Q 015363 182 -NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINL 258 (408)
Q Consensus 182 -~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~i 258 (408)
+-++ +.+.+-|.+..+|| +... ....+++.+-+|++.|..|+|...+ +.||+. .||.|++
T Consensus 161 ~dp~~------------igtSSiDTTCTiWd-ie~~----~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRm 223 (364)
T KOG0290|consen 161 VDPNL------------IGTSSIDTTCTIWD-IETG----VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRM 223 (364)
T ss_pred CCcce------------eEeecccCeEEEEE-Eeec----cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEE
Confidence 2233 48889999999999 5432 1111233357999999999999876 566666 8999999
Q ss_pred EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-CeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (408)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (408)
||++......-+++ -.....+...++|++..++++|+-..| ..|.|.|+|... .++..+++|
T Consensus 224 FDLR~leHSTIIYE-----~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H--------- 286 (364)
T KOG0290|consen 224 FDLRSLEHSTIIYE-----DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNH--------- 286 (364)
T ss_pred EEecccccceEEec-----CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcC---------
Confidence 99996555444332 112256688999999998999987765 579999999754 345666666
Q ss_pred ccccceeEEEEEccC-CCEEEEeC-CCeEEEEECCCCC-----CceeeeeecccccceEEecCCCeeeee
Q 015363 338 TEIIASISDIKFARN-GRHILSRD-YMTLKLWDINMDS-----GPVATFQVHEHLRPKVMHSSKNYFMGL 400 (408)
Q Consensus 338 ~~h~~~i~~~~~spd-g~~l~s~~-d~~v~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (408)
.+.|+.++|.|. ...|.+++ |..+.+||+.... .++-.+....+.....++..++|.+++
T Consensus 287 ---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 287 ---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred ---cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEE
Confidence 589999999996 45788875 5999999997532 244455554455667777888888776
No 168
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.4e-17 Score=133.08 Aligned_cols=242 Identities=10% Similarity=0.115 Sum_probs=150.5
Q ss_pred cceeeccceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363 30 EEVQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (408)
.-..|.+.|..+.|.+- |+.+|+++.|+++.||.-......... -.+...+.+....
T Consensus 54 ~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~--------------~~Wv~~ttl~Dsr------- 112 (361)
T KOG2445|consen 54 SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG--------------RRWVRRTTLVDSR------- 112 (361)
T ss_pred eEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc--------------ceeEEEEEeecCC-------
Confidence 34579999999999763 999999999999999986422210000 0122233344333
Q ss_pred ccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-ccCCCCCeEeecCCceeeEEccCCCee
Q 015363 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-KAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
..|++|.|.|..-|-.+|+++.||.+|||+.-...-...-....... ...+.+. ......++.|+|....
T Consensus 113 -----ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~---~~~~~~CvsWn~sr~~- 183 (361)
T KOG2445|consen 113 -----SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK---NKQPCFCVSWNPSRMH- 183 (361)
T ss_pred -----cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc---ccCcceEEeecccccc-
Confidence 77999999998889899999999999999876432221111110000 0000000 0111226777754211
Q ss_pred ecccccccCccccCCCCC-----ceeeeceeeeccccccccccceeeccccccceEEEEeCCCC----CEEEEe-cCCeE
Q 015363 187 ERNFGCASNDSSFPPGGV-----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----ETFISA-DDLRI 256 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~-~d~~i 256 (408)
...++.|+.+ +.+.+|. ... .. ........ +..|..+|+.|+|.|+- .+||++ .|| |
T Consensus 184 --------~p~iAvgs~e~a~~~~~~~Iye-~~e-~~-rKw~kva~-L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v 250 (361)
T KOG2445|consen 184 --------EPLIAVGSDEDAPHLNKVKIYE-YNE-NG-RKWLKVAE-LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V 250 (361)
T ss_pred --------CceEEEEcccCCccccceEEEE-ecC-Cc-ceeeeehh-cCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence 1112443333 4777776 211 11 11112222 36899999999999973 567888 889 9
Q ss_pred EEEeCCCCCcee-----------eEeec-CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 257 NLWNLEISNQSF-----------NIVDV-KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 257 ~iwd~~~~~~~~-----------~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
+||.+......+ .-+++ +...+.+|++.|..+.|+-.| ..|++.+.||.|++|...-.
T Consensus 251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhh
Confidence 999997311000 00111 113478899999999999999 99999999999999976543
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.9e-17 Score=129.31 Aligned_cols=274 Identities=12% Similarity=0.144 Sum_probs=179.7
Q ss_pred cCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccc
Q 015363 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (408)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (408)
+....|+|... + ......+|..+|+|++||++|+.|+|+|.|..|.+||+..+...
T Consensus 45 G~vvI~D~~T~-~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l--------------------- 100 (405)
T KOG1273|consen 45 GRVVIYDFDTF-R--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL--------------------- 100 (405)
T ss_pred CcEEEEEcccc-c--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce---------------------
Confidence 34567888763 2 23345689999999999999999999999999999999877531
Q ss_pred eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (408)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (408)
..+ ...++|....|+|.... .++++-.+..-.+-++..... ..+..... +...
T Consensus 101 --~ri-------------rf~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d-------~dln--- 153 (405)
T KOG1273|consen 101 --KRI-------------RFDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSDPKH-SVLPKDDD-------GDLN--- 153 (405)
T ss_pred --eEE-------------EccCccceeeeccccCC-eEEEEEecCCcEEEEecCCce-eeccCCCc-------cccc---
Confidence 111 12277999999987655 444444444455555554322 11111111 0000
Q ss_pred CCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe
Q 015363 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (408)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (408)
.......|.+.|+++ ++|...|.+.+++ ... .+|+..+.......|..+.++..|+.|+.-
T Consensus 154 ~sas~~~fdr~g~yI------------itGtsKGkllv~~-a~t------~e~vas~rits~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 154 SSASHGVFDRRGKYI------------ITGTSKGKLLVYD-AET------LECVASFRITSVQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred cccccccccCCCCEE------------EEecCcceEEEEe-cch------heeeeeeeechheeeeEEEEeccCcEEEEe
Confidence 000123578888888 9999999999988 332 233333311223678889999999999998
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCC-Cccc--CCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceecccccccc
Q 015363 252 -DDLRINLWNLEISNQSFNIVDVKP-ANME--DLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFE 326 (408)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~-~~~~--~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 326 (408)
.|+.|+.|+++.-...-+-....+ ..+. -....=.+++|+.+| .++++++ ....++||....|.++ +.+.
T Consensus 215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~GsLV----KILh 289 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGSLV----KILH 289 (405)
T ss_pred cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCccee----eeec
Confidence 999999999872111100000000 0000 011223578999999 5655554 4578999999999887 7887
Q ss_pred cccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~ 371 (408)
|.+ .....++.|+|-...|++-..|.|++|....
T Consensus 290 G~k-----------gE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 290 GTK-----------GEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred CCc-----------hhheeecccccceeeeeeccCCceEEEEeec
Confidence 774 2457889999998888888779999998864
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.5e-18 Score=146.48 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=178.5
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
...|.+.|.+++|.|....|++|+.||+|++|++...... -.-+.+.+.+|++|.
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~---------- 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE---------- 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc----------
Confidence 4569999999999999999999999999999999432110 112455678899999
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc----------EEEEeccCCCCcccCCCCCeEeecCCceeeEEc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (408)
++|.|++.. ++++.+++|+-||+|+.|++-... ....+.++ .+.++ .++++
T Consensus 345 --gPVl~v~v~--~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh--------tdavw-------~l~~s 405 (577)
T KOG0642|consen 345 --GPVLCVVVP--SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH--------TDAVW-------LLALS 405 (577)
T ss_pred --CceEEEEec--CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc--------cccee-------eeeec
Confidence 789999995 558899999999999999765211 01111111 22333 56677
Q ss_pred cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEE
Q 015363 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINL 258 (408)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~i 258 (408)
+....| ++++.||++++|+ ...... |.......| +.-.++++-... ...++. .-+.--+
T Consensus 406 ~~~~~L------------lscs~DgTvr~w~-~~~~~~-----~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~ 466 (577)
T KOG0642|consen 406 STKDRL------------LSCSSDGTVRLWE-PTEESP-----CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSI 466 (577)
T ss_pred ccccce------------eeecCCceEEeec-cCCcCc-----cccCCcccc-CCcceEeeccchhHhhhhhcccccccc
Confidence 766666 9999999999999 433222 111001112 223344443222 111111 2233333
Q ss_pred EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (408)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (408)
++.+. .+.+.+++............+..+.++|.+ .+.+++..|+.|+++|..++..+ .....|
T Consensus 467 ~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l----~s~~a~---------- 530 (577)
T KOG0642|consen 467 DDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKIL----HSMVAH---------- 530 (577)
T ss_pred hhhhh-hhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccccc----hheeec----------
Confidence 33332 222222221111111123456788999999 89999999999999999998664 555555
Q ss_pred cccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecc
Q 015363 339 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (408)
Q Consensus 339 ~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~ 383 (408)
...++++++.|+|.+|++++ |+.+++|.+.. ..++.....|.
T Consensus 531 --~~svtslai~~ng~~l~s~s~d~sv~l~kld~-k~~~~es~~~r 573 (577)
T KOG0642|consen 531 --KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV-KTCVLESTAHR 573 (577)
T ss_pred --cceecceeecCCCceEEeecCCceeehhhccc-hheeecccccc
Confidence 47899999999999999996 79999999986 56666666654
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=3.8e-17 Score=131.56 Aligned_cols=277 Identities=10% Similarity=0.123 Sum_probs=173.7
Q ss_pred ccceEEEEEC-------CCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc--CCccccc
Q 015363 35 VDIISAIEFD-------KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS--HEPEFDY 105 (408)
Q Consensus 35 ~~~V~~~~~s-------~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--h~~~~~~ 105 (408)
...|..-+|= |+..++|+.+++.-|.|||.-+++.. ..+++ |..++
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr-----------------------aSy~~ydh~de~-- 158 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR-----------------------ASYRAYDHQDEY-- 158 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc-----------------------cchhhhhhHHhh--
Confidence 4556666664 56789999999999999999888642 22222 22111
Q ss_pred ccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (408)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (408)
....+++|+|+ |++|++ +..+.|+++|+. .+.--.+....... .+...+.+. +++++|...
T Consensus 159 -------taAhsL~Fs~D--Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~-k~gq~giis-------c~a~sP~~~ 220 (406)
T KOG2919|consen 159 -------TAAHSLQFSPD--GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGIIS-------CFAFSPMDS 220 (406)
T ss_pred -------hhheeEEecCC--CCeEee-cccceEEEeeccCCCCCCcchhhhhcc-cccccceee-------eeeccCCCC
Confidence 33568999654 887755 667899999994 44322211111100 011112222 578888654
Q ss_pred -eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeC
Q 015363 185 -CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNL 261 (408)
Q Consensus 185 -~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~ 261 (408)
++ +.++....+-+|. - ....+... +.+|.+.|+.+.|.++|+.|.+| .|..|..||+
T Consensus 221 ~~~------------a~gsY~q~~giy~-~------~~~~pl~l-lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 221 KTL------------AVGSYGQRVGIYN-D------DGRRPLQL-LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cce------------eeecccceeeeEe-c------CCCCceee-ecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 44 6777777766655 1 11233344 37999999999999999999998 6899999999
Q ss_pred CCCCceeeEeecCCCcccCCcC-CeEE--EEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccc
Q 015363 262 EISNQSFNIVDVKPANMEDLTE-VITS--AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (408)
+..+..+-. +..|.+ .-.. ....|++ ++|++|+.||.|++||++.-.. ++..+..+
T Consensus 281 R~~~~pv~~-------L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn---~~sv~~~~---------- 339 (406)
T KOG2919|consen 281 RYSRDPVYA-------LERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN---EVSVTGNY---------- 339 (406)
T ss_pred hhccchhhh-------hhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC---cccccccc----------
Confidence 976654422 334433 1123 4556889 9999999999999999987321 11333333
Q ss_pred cccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeee-cccccceEEecCCCee
Q 015363 339 EIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV-HEHLRPKVMHSSKNYF 397 (408)
Q Consensus 339 ~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 397 (408)
+..++.++++|--.++++++...+.-..-+.+++....++. +..-...++..+.+..
T Consensus 340 --sd~vNgvslnP~mpilatssGqr~f~~~~dD~ge~~~el~~~ad~n~~qlw~~y~~a~ 397 (406)
T KOG2919|consen 340 --SDTVNGVSLNPIMPILATSSGQRIFKYPKDDNGELETELEEEADENEKQLWTGYVSAL 397 (406)
T ss_pred --cccccceecCcccceeeeccCceeecCCCcccccccccccchhhhhhhheeeeecccc
Confidence 57899999999978888887655544433322333322222 2223556666665554
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=6.3e-17 Score=142.33 Aligned_cols=251 Identities=15% Similarity=0.189 Sum_probs=161.3
Q ss_pred ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (408)
Q Consensus 37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (408)
.|+.++|-|||..|+.+..+ .+.|||...+. .++++++|. +.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~-----------------------llqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGT-----------------------LLQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcc-----------------------ccccccccc------------ceEE
Confidence 89999999999988877544 89999998776 467899999 7899
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCc
Q 015363 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (408)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (408)
+++|+ .||++||+|+.|..|.+|.-+-.-..+ ... ...+. ++.|+|-...+
T Consensus 58 cVAys--~dGkrFASG~aDK~VI~W~~klEG~Lk---YSH-------~D~IQ-------CMsFNP~~h~L---------- 108 (1081)
T KOG1538|consen 58 CVAYA--KDGKRFASGSADKSVIIWTSKLEGILK---YSH-------NDAIQ-------CMSFNPITHQL---------- 108 (1081)
T ss_pred EEEEc--cCCceeccCCCceeEEEecccccceee---ecc-------CCeee-------EeecCchHHHh----------
Confidence 99996 569999999999999999865332221 111 11232 68888877765
Q ss_pred cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC
Q 015363 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (408)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (408)
++++- ...-+|. .+.....+ .....++.+.+|..||.+|+.| .+|+|.+-+.. ++....+
T Consensus 109 --asCsL-sdFglWS----~~qK~V~K------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I----- 169 (1081)
T KOG1538|consen 109 --ASCSL-SDFGLWS----PEQKSVSK------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI----- 169 (1081)
T ss_pred --hhcch-hhccccC----hhhhhHHh------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----
Confidence 44433 2344554 11111111 1223678899999999999999 99999998665 3333332
Q ss_pred CcccCCcCCeEEEEEcCCC----CceEEEEeCCCeEEEEEcCCCceeccccccccccc---------------CCC----
Q 015363 276 ANMEDLTEVITSAEFHPTH----CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE---------------APG---- 332 (408)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~~~---- 332 (408)
.+-.+..++|++++|+|.. ...+++.....++.+|.+.....-...--.|..+. ...
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence 1123456777888887753 13566666666666665542211000000000000 000
Q ss_pred -----CccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363 333 -----TRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (408)
Q Consensus 333 -----~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~ 371 (408)
..-+......+|+.++..|++++++.| -||+|-.|++-.
T Consensus 250 TR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 250 TRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 000112234689999999999999988 589999999864
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2.4e-16 Score=145.45 Aligned_cols=271 Identities=14% Similarity=0.242 Sum_probs=178.1
Q ss_pred ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccccee
Q 015363 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (408)
Q Consensus 37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (408)
+-..+.|+|-...++++...-.|++||.+.++. +..|..+... ...|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-----------------------l~~F~n~~~~---------~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-----------------------LNGFDNGAFP---------DTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCce-----------------------eccccCCCCC---------CCccc
Confidence 345788898888888888667999999987753 2333333211 16699
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
.+.+....|..++++|+.||.|+||+--.. +...+.....-. +..........-+.|......+
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls------~~~~~~r~~~~v~dWqQ~~G~L------- 1180 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLS------DQLPGARGTGLVVDWQQQSGHL------- 1180 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccc------ccCccCCCCCeeeehhhhCCeE-------
Confidence 999987777889999999999999964322 211111111100 0011111111235666665555
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeC-CCCCEEEEe-cCCeEEEEeCCCCCc--eee
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQ--SFN 269 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~d~~i~iwd~~~~~~--~~~ 269 (408)
++++.-..|++|| ..... +...+..+....++++.-+ +.|+.+++| .||.|++||.+.... .+.
T Consensus 1181 -----l~tGd~r~IRIWD-a~~E~------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1181 -----LVTGDVRSIRIWD-AHKEQ------VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred -----EecCCeeEEEEEe-cccce------eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 7777799999999 43321 1111123334557766554 346999999 999999999986544 222
Q ss_pred EeecCCCcccCCcCC--eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 270 IVDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
. ...|... |..+.+.+.|-..|++|+.||.|++||+|..... . .-+...|.. ..+..+++
T Consensus 1249 ~-------~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~-~~~iv~~~~---------yGs~lTal 1310 (1387)
T KOG1517|consen 1249 V-------YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-T-FLTIVAHWE---------YGSALTAL 1310 (1387)
T ss_pred e-------ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc-c-cceeeeccc---------cCccceee
Confidence 2 4567766 9999999988445999999999999999985221 1 111222210 01358999
Q ss_pred EEccCCCEEEEeCCCeEEEEECCCCCCceeeeeeccc
Q 015363 348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 348 ~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
..+++...+|+|+-+.|+||++. |+.+..++.+++
T Consensus 1311 ~VH~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPG 1345 (1387)
T ss_pred eeccCCCeeeecCcceEEEEecC--hhhhcccccCcc
Confidence 99999999999977999999995 577766665544
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.9e-15 Score=133.13 Aligned_cols=261 Identities=11% Similarity=0.143 Sum_probs=157.0
Q ss_pred eeeccceEEEEECCCCCeEEEee-cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
+.+.+....++++|++++|++++ .++.|.+|+++.... ........ ..
T Consensus 31 ~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~--------------------l~~~~~~~-~~---------- 79 (330)
T PRK11028 31 VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA--------------------LTFAAESP-LP---------- 79 (330)
T ss_pred EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc--------------------eEEeeeec-CC----------
Confidence 34556788899999999887664 578899999863210 00111111 11
Q ss_pred cccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCC-cE---EEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363 111 IEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEK-KV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~-~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
.....++|+| +++++++++ .++.|.+|++.+. .. ........ .+..+.++|+++.
T Consensus 80 --~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~p~g~~ 139 (330)
T PRK11028 80 --GSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE----------------GCHSANIDPDNRT 139 (330)
T ss_pred --CCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC----------------cccEeEeCCCCCE
Confidence 2356788964 477887776 5889999999742 11 11111110 1125778999988
Q ss_pred eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCC
Q 015363 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~ 263 (408)
+ +++...++.|.+|| +..... .................+.++|+|++++++++ .++.|.+|+++.
T Consensus 140 l-----------~v~~~~~~~v~v~d-~~~~g~-l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 140 L-----------WVPCLKEDRIRLFT-LSDDGH-LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred E-----------EEeeCCCCEEEEEE-ECCCCc-ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 7 34566779999999 543211 11000000001112346789999999999887 499999999974
Q ss_pred CC-ce--eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCCeEEEEEcCCCceecccccccccccCCCCcccccc
Q 015363 264 SN-QS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (408)
Q Consensus 264 ~~-~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (408)
.. .. ...+...+.... +......+.++|++ ++++++. .++.|.+|++...... ..+.++.. .
T Consensus 207 ~~~~~~~~~~~~~~p~~~~-~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~----~~~~~~~~-------~- 272 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFS-DTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSV----LSFEGHQP-------T- 272 (330)
T ss_pred CCCCEEEEEEEecCCCcCC-CCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCe----EEEeEEEe-------c-
Confidence 22 21 222211111111 12234468999999 7777764 4789999999654311 11112210 0
Q ss_pred ccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363 340 IIASISDIKFARNGRHILSRD--YMTLKLWDINM 371 (408)
Q Consensus 340 h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~ 371 (408)
......+.|+|||++|+++. +++|.+|+++.
T Consensus 273 -~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 273 -ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred -cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 01345789999999999873 59999999864
No 175
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=3.3e-16 Score=126.09 Aligned_cols=227 Identities=13% Similarity=0.193 Sum_probs=163.5
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
..+|+|.+|++|+..+|++.....|.||...+.. .++...+++.|. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------~w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------LWEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------------CceeceehhhhC------------cc
Confidence 4689999999999999999999999999987765 144566778887 77
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEc-CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
|+.|.|.|. ...|++|+.|+.-++|.. ..++...++.
T Consensus 58 vtgvdWap~--snrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDWAPK--SNRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEeecCC--CCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 999999876 558999999999999988 4444433211
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
+..++...+++.|+|.++.||+| ....|.||-++....-.-..
T Consensus 96 -----------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK- 139 (361)
T KOG1523|consen 96 -----------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK- 139 (361)
T ss_pred -----------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh-
Confidence 13445678999999999999999 78888888877333221100
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccc-------cccccceeE
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF-------FTEIIASIS 345 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~h~~~i~ 345 (408)
..-..+...|++++|+|++ -+|++|+.|+..+++..--...-.+ +.......+.. +....+.|.
T Consensus 140 ---hikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdek-----pap~pWgsk~PFG~lm~E~~~~ggwvh 210 (361)
T KOG1523|consen 140 ---HIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEK-----PAPTPWGSKMPFGQLMSEASSSGGWVH 210 (361)
T ss_pred ---hhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccC-----CCCCCCccCCcHHHHHHhhccCCCcee
Confidence 0123467789999999999 9999999999999997532211111 11111111111 223357899
Q ss_pred EEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeee
Q 015363 346 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 346 ~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~ 380 (408)
.+.|+|+|..|+-. .|.++.+=|...+.+.+++..
T Consensus 211 ~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 211 GVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred eeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence 99999999999965 589999999876443444443
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.1e-16 Score=130.62 Aligned_cols=297 Identities=9% Similarity=0.119 Sum_probs=190.7
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+|.+.|++|.|+.++++||+|+.|..+++|+++..-.. ...+.+ .+.+|..
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-----------------k~~KPI-~~~~~~H-------- 104 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-----------------KTPKPI-GVMEHPH-------- 104 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-----------------cCCCCc-eeccCcc--------
Confidence 34579999999999999999999999999999998754210 001112 2333321
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.+.|.|++|. ....++.+|..+++|.+.|+++.+.+.++..... .|.|+ .+..+|....+
T Consensus 105 --~SNIF~L~F~--~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~------~~~VY-------~m~~~P~DN~~--- 164 (609)
T KOG4227|consen 105 --RSNIFSLEFD--LENRFLYSGERWGTVIKHDIETKQSIYVANENNN------RGDVY-------HMDQHPTDNTL--- 164 (609)
T ss_pred --ccceEEEEEc--cCCeeEecCCCcceeEeeecccceeeeeecccCc------cccee-------ecccCCCCceE---
Confidence 2779999994 4467899999999999999999988887766543 34555 56677776665
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
++.+.++.|.+|| .+...... .+. ...........+.|+|... +|++. ..+.+.+||.+.....
T Consensus 165 ---------~~~t~~~~V~~~D-~Rd~~~~~--~~~--~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 165 ---------IVVTRAKLVSFID-NRDRQNPI--SLV--LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred ---------EEEecCceEEEEe-ccCCCCCC--cee--eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence 8889999999999 44322111 111 1133346788899999875 55556 7888999999855443
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
+..+... ..++.....-+++.|+|+| ..|++--....-.+||+-+..+ ..++....++ -.+ ....+.++
T Consensus 231 ~~~~~~~-~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~-----~V~k~D~N~~--GY~--N~~T~KS~ 299 (609)
T KOG4227|consen 231 VYQRSMF-KGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRC-----FVLKSDHNPN--GYC--NIKTIKSM 299 (609)
T ss_pred HHhhhcc-ccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccc-----eeEeccCCCC--cce--eeeeeeee
Confidence 2211100 1122212223678999999 6666655555666788876532 2222211110 000 02467888
Q ss_pred EEccCCCEEEEeCC-CeEEEEECCCC----C------------------CceeeeeecccccceEEecCCCeee
Q 015363 348 KFARNGRHILSRDY-MTLKLWDINMD----S------------------GPVATFQVHEHLRPKVMHSSKNYFM 398 (408)
Q Consensus 348 ~~spdg~~l~s~~d-~~v~~wd~~~~----~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (408)
+|-.| .-+++|+| =.|++|.+... | +.+-.+++|......+-..-.+.++
T Consensus 300 ~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l 372 (609)
T KOG4227|consen 300 TFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLL 372 (609)
T ss_pred eeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceE
Confidence 89865 44889986 88999998642 1 2345677777766555544444444
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=9.6e-18 Score=150.77 Aligned_cols=248 Identities=17% Similarity=0.251 Sum_probs=173.5
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
..+|.++|+|+.|...|.++++|+.|..++||..++.. +++.+.||+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----------------------~lAs~rGhs---------- 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----------------------CLASCRGHS---------- 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------hhccCCCCc----------
Confidence 35799999999999999999999999999999988776 467889999
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
+.|+.++.+ .+..++++++.|..|++|.+..+..+.++..+.. .|. +++|+|-
T Consensus 233 --~ditdlavs--~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg--------avt-------aiafsP~-------- 285 (1113)
T KOG0644|consen 233 --GDITDLAVS--SNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG--------AVT-------AIAFSPR-------- 285 (1113)
T ss_pred --cccchhccc--hhhhhhhhcccCceEEEEecCCCchHHHHhcccc--------cee-------eeccCcc--------
Confidence 669999995 4567899999999999999999988877777643 233 4455542
Q ss_pred ccccCccccCCCCCceeeeceeeecccccccccccee---------------------------------eccccccceE
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI---------------------------------YAHAHDYHIN 237 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~v~ 237 (408)
.+.+.||++++|| ..-........+... ....+...+.
T Consensus 286 --------~sss~dgt~~~wd-~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~li 356 (1113)
T KOG0644|consen 286 --------ASSSDDGTCRIWD-ARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLI 356 (1113)
T ss_pred --------ccCCCCCceEecc-ccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceE
Confidence 2445666666666 321100000000000 0011111111
Q ss_pred EEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 238 SISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 238 ~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
-+..+.+- .+.+++ .+-.+++|++.++ .... .+.+|...+..+.++|.++.+..+++.||...|||+-.+
T Consensus 357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H-------~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 357 FVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLH-------NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred EEeccccccccceeeeeeeEeeeeecccc-hhhh-------hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 11222121 344445 6677888888844 3322 267899999999999999888899999999999999988
Q ss_pred ceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (408)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~ 371 (408)
.... ..+.+| +.+.+.+||+||..++..+| |.++|.....
T Consensus 429 ~pik---~y~~gh-------------~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 429 IPIK---HYFIGH-------------GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred Ccce---eeeccc-------------ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 5442 222344 56788899999999998877 9999998764
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=7.1e-16 Score=127.93 Aligned_cols=286 Identities=14% Similarity=0.222 Sum_probs=175.1
Q ss_pred cCcccceeeecccCcC------cccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCccccccccccccc
Q 015363 12 AQPLEWKFSQVFGERT------AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMS 85 (408)
Q Consensus 12 ~~~~~w~~~~~~~~~~------~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 85 (408)
..-..|+....-.+.. ......|...|+++.|+|+|.+||+|+.+|.|.+|....-... .+.+ +.-.
T Consensus 36 ~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~~d~------e~~~ 108 (434)
T KOG1009|consen 36 KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-DADT------EADL 108 (434)
T ss_pred cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-cccc------hhhh
Confidence 4556788876432221 1123469999999999999999999999999999997642210 0111 1111
Q ss_pred CCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCC
Q 015363 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (408)
Q Consensus 86 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
..+.+.....+.+|. ..|..++|+|+ +.++++++.|+.+++||+..++.......+.+-
T Consensus 109 ~ke~w~v~k~lr~h~------------~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y------- 167 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHR------------DDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY------- 167 (434)
T ss_pred CccceEEEEEecccc------------cchhhhhccCC--CceeeeeeccceEEEEEeccceeEeeccccccc-------
Confidence 234556667788888 66999999765 779999999999999999999988887776543
Q ss_pred CeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccc---------------ccccccceeec-
Q 015363 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET---------------NLVAGCRRIYA- 229 (408)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~~~- 229 (408)
+. .++|.|-++++ ++-+.|...+.+. +..... ...+...+.+.
T Consensus 168 -vq-------gvawDpl~qyv------------~s~s~dr~~~~~~-~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhD 226 (434)
T KOG1009|consen 168 -VQ-------GVAWDPLNQYV------------ASKSSDRHPEGFS-AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHD 226 (434)
T ss_pred -cc-------eeecchhhhhh------------hhhccCcccceee-eeeeeeeeeeeeeEeeecccCCCCcceeeeeec
Confidence 22 57888888887 4444444333333 111000 00011111110
Q ss_pred cccccceEEEEeCCCCCEEEEe-----cCCeE-----EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC-------
Q 015363 230 HAHDYHINSISNNSDGETFISA-----DDLRI-----NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP------- 292 (408)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-----~d~~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------- 292 (408)
..-..-.+.++|+|+|.+|++. ..+.+ ++|+-....++.. .+..-..++..+.|+|
T Consensus 227 eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~-------~lp~~~k~~lavr~~pVy~elrp 299 (434)
T KOG1009|consen 227 ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA-------RLPSPKKPALAVRFSPVYYELRP 299 (434)
T ss_pred CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee-------ecCCCCcceEEEEeeeeEEEecc
Confidence 0011235668899999999863 13333 4454432222221 1333334444444443
Q ss_pred -----------CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-
Q 015363 293 -----------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (408)
Q Consensus 293 -----------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~- 360 (408)
-+ ..+|.++ ...|.+||.++-... .... .-|-..|++++|++||.+|+..+
T Consensus 300 ~~~~~~~~~lpyr-lvfaiAt-~~svyvydtq~~~P~----~~v~-----------nihy~~iTDiaws~dg~~l~vSS~ 362 (434)
T KOG1009|consen 300 LSSEKFLFVLPYR-LVFAIAT-KNSVYVYDTQTLEPL----AVVD-----------NIHYSAITDIAWSDDGSVLLVSST 362 (434)
T ss_pred ccccccccccccc-eEEEEee-cceEEEeccccccce----EEEe-----------eeeeeeecceeecCCCcEEEEecc
Confidence 23 3455554 557999999875432 2222 22357899999999999988775
Q ss_pred CCeEEEEECC
Q 015363 361 YMTLKLWDIN 370 (408)
Q Consensus 361 d~~v~~wd~~ 370 (408)
||...+--+.
T Consensus 363 DGyCS~vtfe 372 (434)
T KOG1009|consen 363 DGFCSLVTFE 372 (434)
T ss_pred CCceEEEEEc
Confidence 7766665554
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=5.5e-17 Score=141.87 Aligned_cols=240 Identities=18% Similarity=0.246 Sum_probs=162.6
Q ss_pred ECCCCCeEEE--eecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEE
Q 015363 43 FDKSGDHLAT--GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120 (408)
Q Consensus 43 ~s~~~~~l~s--g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~ 120 (408)
|+.+..++|+ .+..|.|-||++...... |+...-..+.+ ..|+++.|
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrL-----------------PDgv~p~l~Ng--------------t~vtDl~W 635 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRL-----------------PDGVMPGLFNG--------------TLVTDLHW 635 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCC-----------------CcccccccccC--------------ceeeeccc
Confidence 3334455554 455789999998754321 23222233333 44999999
Q ss_pred eecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccC
Q 015363 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP 200 (408)
Q Consensus 121 ~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (408)
.|- |.+.||+++.||.|++|.+..+......
T Consensus 636 dPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~------------------------------------------------ 666 (1012)
T KOG1445|consen 636 DPF-DDERLAVATDDGQINLWRLTANGLPENE------------------------------------------------ 666 (1012)
T ss_pred CCC-ChHHeeecccCceEEEEEeccCCCCccc------------------------------------------------
Confidence 874 4578999999999999998765422110
Q ss_pred CCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcc
Q 015363 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 278 (408)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (408)
..+... +..|...|+++.|+|-- +.|+++ .|.+|++||+.+...... +
T Consensus 667 ---------------------~tPe~~-lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~--------l 716 (1012)
T KOG1445|consen 667 ---------------------MTPEKI-LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR--------L 716 (1012)
T ss_pred ---------------------CCccee-eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe--------e
Confidence 011111 37888889999999964 677788 899999999996554433 7
Q ss_pred cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363 279 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (408)
Q Consensus 279 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s 358 (408)
.+|.+.|..++|+|+| +.+|+.+.||+|++|+-+++.. +++.-.+.. ...--.+.|.-||++|+.
T Consensus 717 ~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~---pv~Eg~gpv-----------gtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 717 VGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQ---PVYEGKGPV-----------GTRGARILWACDGRIVIV 781 (1012)
T ss_pred ccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCC---ccccCCCCc-----------cCcceeEEEEecCcEEEE
Confidence 8999999999999999 9999999999999999998753 233333321 122345789999998875
Q ss_pred -e----CCCeEEEEECCCC-CCceeeeeecccccceEEecCCCe--eee----eeceeeecC
Q 015363 359 -R----DYMTLKLWDINMD-SGPVATFQVHEHLRPKVMHSSKNY--FMG----LDNIHTLYE 408 (408)
Q Consensus 359 -~----~d~~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~d~~~~~~~ 408 (408)
| +...|.+||..+- +.++.+..-.......+. .|+.| .+. .|++..+||
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP-~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP-HYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred ecccccchhhhhhhhhhhccCCcceeeeecccCccccc-cccCCCceEEEecCCCceEEEEE
Confidence 4 2378999998763 355555554444444443 34433 332 288888876
No 180
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.1e-16 Score=137.20 Aligned_cols=235 Identities=14% Similarity=0.230 Sum_probs=162.3
Q ss_pred eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeec
Q 015363 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (408)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (408)
+...+.+|+ +.|.+|...|. |.+|++|+.||+|+||.+.++.++....... .|.
T Consensus 392 ~~lvyrGHt------------g~Vr~iSvdp~--G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---------~I~--- 445 (733)
T KOG0650|consen 392 CALVYRGHT------------GLVRSISVDPS--GEWLASGSDDGTVRIWEIATGRCVRTVQFDS---------EIR--- 445 (733)
T ss_pred eeeeEeccC------------CeEEEEEecCC--cceeeecCCCCcEEEEEeecceEEEEEeecc---------eeE---
Confidence 345678888 77999999665 8899999999999999999999998877733 343
Q ss_pred CCceeeEEccCCCeeeccc-------------c-----cccCccccCC----CCCceeeeceeeeccccccccccceeec
Q 015363 172 VSAIPKSYMANGGCGERNF-------------G-----CASNDSSFPP----GGVSSLRLPVVVTSQETNLVAGCRRIYA 229 (408)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~-------------~-----~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 229 (408)
+++|+|.+..-..+. | ......++++ ..+..+..|. -...+....+ ++. .
T Consensus 446 ----~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~-~~~~~e~~~~--v~~-~ 517 (733)
T KOG0650|consen 446 ----SVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWS-RASLDELEKG--VCI-V 517 (733)
T ss_pred ----EEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeec-hhhhhhhccc--eEE-E
Confidence 567776654221110 0 0011122222 2345556665 2211122222 122 2
Q ss_pred cccccceEEEEeCCCCCEEEEe----cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC
Q 015363 230 HAHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (408)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 305 (408)
-.|...|+.+.|+..|.+|++. ....|.|+++.... ... .+....+.|.++.|+|.. .+|++++ ..
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-sQ~-------PF~kskG~vq~v~FHPs~-p~lfVaT-q~ 587 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-SQS-------PFRKSKGLVQRVKFHPSK-PYLFVAT-QR 587 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-ccC-------chhhcCCceeEEEecCCC-ceEEEEe-cc
Confidence 4677899999999999999985 35688899887322 221 144456778999999999 5555544 56
Q ss_pred eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
.|+|||+....++ +.+... ...|..++.+|.|..|+.|+ |+.++.||++...++.+++..|..
T Consensus 588 ~vRiYdL~kqelv----KkL~tg------------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~ 651 (733)
T KOG0650|consen 588 SVRIYDLSKQELV----KKLLTG------------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK 651 (733)
T ss_pred ceEEEehhHHHHH----HHHhcC------------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh
Confidence 7999999886554 443333 25899999999999999887 799999999987789999999887
Q ss_pred cc
Q 015363 385 LR 386 (408)
Q Consensus 385 ~~ 386 (408)
..
T Consensus 652 av 653 (733)
T KOG0650|consen 652 AV 653 (733)
T ss_pred hh
Confidence 53
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=3.9e-15 Score=122.21 Aligned_cols=238 Identities=14% Similarity=0.160 Sum_probs=163.5
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
...++.+.|+.+...|..|+.|| -++|+.+..... ..... .. ..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~----------------------~~~~~-~~------------~~ 48 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC----------------------FSKDT-EG------------VS 48 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh----------------------hcccC-CC------------eE
Confidence 34577888999999999999996 568886644310 00000 01 33
Q ss_pred eeEEEEeecCCCcEEEEEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
|.-+-|+ ..++|..+.+. .+++.+++.+..+....+.. .+. ++..+. +.+
T Consensus 49 IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt---------~IL-------~VrmNr--~RL------ 100 (391)
T KOG2110|consen 49 IVEMLFS----SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT---------SIL-------AVRMNR--KRL------ 100 (391)
T ss_pred EEEeecc----cceeEEEecCCCceEEEEEcccCceEEEEecCC---------ceE-------EEEEcc--ceE------
Confidence 6667774 34777776543 58898888777666555532 222 233332 222
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---cCCeEEEEeCCCCCceee
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~ 269 (408)
++.-+ ..|.+|| ++.++....... ...+...+.++++++.+.++|.- ..|.|.+||+.+- +...
T Consensus 101 ------vV~Le-e~IyIyd-I~~MklLhTI~t----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~ 167 (391)
T KOG2110|consen 101 ------VVCLE-ESIYIYD-IKDMKLLHTIET----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVN 167 (391)
T ss_pred ------EEEEc-ccEEEEe-cccceeehhhhc----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-eeee
Confidence 33223 3499999 776554332211 13455667777888888899963 6899999999844 3433
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe-EEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
. +..|.+.+-+++|+++| .+||+++..|+ ||++.+..|+.+ ++|..... ...|.+++
T Consensus 168 ~-------I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl----~eFRRG~~----------~~~IySL~ 225 (391)
T KOG2110|consen 168 T-------INAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKL----YEFRRGTY----------PVSIYSLS 225 (391)
T ss_pred E-------EEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEe----eeeeCCce----------eeEEEEEE
Confidence 3 57899999999999999 99999999885 789999999765 55543311 25799999
Q ss_pred EccCCCEEEEeCC-CeEEEEECCC
Q 015363 349 FARNGRHILSRDY-MTLKLWDINM 371 (408)
Q Consensus 349 ~spdg~~l~s~~d-~~v~~wd~~~ 371 (408)
|+||+++|++.++ ++|.+|.++.
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999998876 9999999975
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=2.2e-16 Score=130.93 Aligned_cols=227 Identities=16% Similarity=0.290 Sum_probs=154.5
Q ss_pred ccceEEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 35 VDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 35 ~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
..+|.++.|.++.. .||||+.|..|+||.+......+ -.+...++..+..|. .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------------~~~~V~y~s~Ls~H~------------~ 66 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------------GDMKVEYLSSLSRHT------------R 66 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------------CceeEEEeecccCCc------------c
Confidence 35789999998755 99999999999999987665320 013455677888888 7
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
.|+++.|+|. |++||+|+.+|.|.+|....-... .. +. ..
T Consensus 67 aVN~vRf~p~--gelLASg~D~g~v~lWk~~~~~~~------~~------------------------d~-e~------- 106 (434)
T KOG1009|consen 67 AVNVVRFSPD--GELLASGGDGGEVFLWKQGDVRIF------DA------------------------DT-EA------- 106 (434)
T ss_pred eeEEEEEcCC--cCeeeecCCCceEEEEEecCcCCc------cc------------------------cc-hh-------
Confidence 7999999755 889999999999999987651100 00 00 00
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
+.......++..+.+|...|..++|+|++.+++++ .|..+++||+. .++...+
T Consensus 107 -----------------------~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-- 160 (434)
T KOG1009|consen 107 -----------------------DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-- 160 (434)
T ss_pred -----------------------hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee--
Confidence 00000111112246788999999999999999999 89999999999 4555544
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc----cccccccC--CCCcccccc-ccceeE
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS----KLFEEQEA--PGTRSFFTE-IIASIS 345 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~-h~~~i~ 345 (408)
+.+|...+..++|.|.+ +++++-+.|...+.+++.........- .....++. ...+.+..+ ...-..
T Consensus 161 -----~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 161 -----LDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred -----ccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 68899999999999999 999999999877777766543321100 00000100 000100000 123356
Q ss_pred EEEEccCCCEEEEe
Q 015363 346 DIKFARNGRHILSR 359 (408)
Q Consensus 346 ~~~~spdg~~l~s~ 359 (408)
.++|+|||.+|++.
T Consensus 235 RlsfTPdG~llvtP 248 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTP 248 (434)
T ss_pred hcccCCCCcEEEcc
Confidence 78999999999974
No 183
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=9.9e-17 Score=129.43 Aligned_cols=235 Identities=9% Similarity=0.083 Sum_probs=145.9
Q ss_pred cceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
...+|...|+.|.+.|+ .+++++||.|..|+||++++..+. .....+.+|.
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv--------------------~VfGG~egHr-------- 181 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV--------------------AVFGGVEGHR-------- 181 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE--------------------EEeccccccc--------
Confidence 45689999999999997 579999999999999999987642 1233457788
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccC----CCCc-ccCCCCCeEeecCCceeeEEc-cC
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN----VHPE-KAAGNGPIFGSHVSAIPKSYM-AN 182 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~-~~~~~~~v~~~~~~~~~~~~~-~~ 182 (408)
+.|.++.|+++ |.+|++++.|-++++|++...+....++.. .... ...|.-... --.|+ .+
T Consensus 182 ----deVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~-------fp~fst~d 248 (385)
T KOG1034|consen 182 ----DEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH-------FPDFSTTD 248 (385)
T ss_pred ----CcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc-------cccccccc
Confidence 66999999655 889999999999999999865433222211 0000 000000000 00000 00
Q ss_pred --CCeeecccccccCccccCCCCCceeeeceeeeccccc-----cccccceee--ccccccc--eEEEEeCCCCCEEEEe
Q 015363 183 --GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-----LVAGCRRIY--AHAHDYH--INSISNNSDGETFISA 251 (408)
Q Consensus 183 --~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~--v~~i~~~~~~~~l~~~ 251 (408)
..++.+..- -.+++++-+-++.|..|. .-..+.. +...+...+ ..-.... ..-.+|+|-++.||.|
T Consensus 249 iHrnyVDCvrw--~gd~ilSkscenaI~~w~-pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 249 IHRNYVDCVRW--FGDFILSKSCENAIVCWK-PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred cccchHHHHHH--HhhheeecccCceEEEEe-cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 001111100 125568888888999988 4211111 111111111 0112222 3345667888999999
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
..|.|.+||++........- ..-......|+..+|+.++ .+|+..+.|++|.-||..
T Consensus 326 nq~g~v~vwdL~~~ep~~~tt----l~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTT----LTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCCCcEEEEECCCCCCccCce----EEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 99999999998655421110 0011224568999999999 899999999999999864
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=6.4e-16 Score=122.67 Aligned_cols=217 Identities=16% Similarity=0.218 Sum_probs=152.4
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
.+.+.|.|+.|.|++..||+-. |..|.+|+++..... .+.+... .+.++.
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~----------------------vaev~ss-------~s~e~~ 170 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI----------------------VAEVLSS-------ESAEMR 170 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch----------------------heeeccc-------cccccc
Confidence 4566899999999998888876 779999999876531 0111100 001112
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEec-cCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFD-WNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
...++-+|+|..+|..+++ ..|+++..||+++.+....+. .+.. .+. .+.|+|+.+++
T Consensus 171 ~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq--------~vr-------dlDfNpnkq~~----- 229 (370)
T KOG1007|consen 171 HSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQ--------RVR-------DLDFNPNKQHI----- 229 (370)
T ss_pred ceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcc--------eee-------eccCCCCceEE-----
Confidence 5588899999888877765 568999999999765433222 1111 122 57888988876
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCceee
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+++++.|+.|++|| .+.. ..+++. +.+|.-+|.++.|+|... ++++| .|..|.+|....-....+
T Consensus 230 ------lvt~gDdgyvriWD-~R~t-----k~pv~e-l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q 296 (370)
T KOG1007|consen 230 ------LVTCGDDGYVRIWD-TRKT-----KFPVQE-LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ 296 (370)
T ss_pred ------EEEcCCCccEEEEe-ccCC-----Cccccc-cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence 79999999999999 4432 234444 489999999999999864 55566 899999997653221111
Q ss_pred Ee---------------ecCC------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 270 IV---------------DVKP------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 270 ~~---------------~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
+. +.++ .++..|...|++++|+.-.+-+||+-+.||++.|=.+.
T Consensus 297 i~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 297 IEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 10 0011 25678999999999999888899999999999986654
No 185
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.8e-16 Score=133.28 Aligned_cols=292 Identities=13% Similarity=0.164 Sum_probs=189.1
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
.-.|.+.|+.|.|+..|..|++|+.|..|.+||+...... +.--.+|.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~---------- 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC---------- 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence 3479999999999999999999999999999998876531 22235566
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|..-.|.|..+...+++++.||.+++=.+.. +.+..+.....+ .+.+. .++..|+..+.
T Consensus 186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h------~g~vh-------klav~p~sp~~--- 247 (559)
T KOG1334|consen 186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH------EGPVH-------KLAVEPDSPKP--- 247 (559)
T ss_pred --cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc------cCccc-------eeeecCCCCCc---
Confidence 667788899988888999999999999987653 333322222111 22233 45555555443
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeecccccc---ceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCC
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSDGE-TFISA-DDLRINLWNLEIS 264 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~ 264 (408)
+++++.|+.+.-.| ++.........|+. .+.. ....++.+|... .++++ .|..+++||.+.-
T Consensus 248 --------f~S~geD~~v~~~D-lr~~~pa~~~~cr~----~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 248 --------FLSCGEDAVVFHID-LRQDVPAEKFVCRE----ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred --------ccccccccceeeee-eccCCccceeeeec----cCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 58999999999888 54432222222222 2223 577899999875 77787 8999999998743
Q ss_pred CceeeE---eecCCCcc-cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 265 NQSFNI---VDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 265 ~~~~~~---~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
...-.. -.+-|..+ ......|++++|+.++..+|++ -.|-.|+++.-..+.-. .+. .. ....+..+..++||
T Consensus 315 ~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~-~p~-~~-s~~~~~~k~vYKGH 390 (559)
T KOG1334|consen 315 DKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGS-EPD-PS-SPREQYVKRVYKGH 390 (559)
T ss_pred hhccccchhhhcCCccccccCcccceeEEecCCccceeee-ecccceEEeccccccCC-CCC-CC-cchhhccchhhccc
Confidence 222000 00111111 1234568999999888455554 56778999843322110 000 00 00011223334454
Q ss_pred c--ceeEEEEE-ccCCCEEEEeCC-CeEEEEECCCCCCceeeeeecccccceEE
Q 015363 341 I--ASISDIKF-ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKVM 390 (408)
Q Consensus 341 ~--~~i~~~~~-spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 390 (408)
. ..|..+-| -|...|+++|+| |.|.||+-.+ ++.++.+.+....+++|-
T Consensus 391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred ccccccceeeeccCccceEEecCccceEEEEecch-hHHHHHhhcccceEeccC
Confidence 3 35777754 578899999999 9999999997 788888888777666654
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=137.93 Aligned_cols=277 Identities=13% Similarity=0.116 Sum_probs=176.9
Q ss_pred EEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEE
Q 015363 41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120 (408)
Q Consensus 41 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~ 120 (408)
-.|++|+++++....+ .|.||...++.++ +.+..|. .+++.+.+
T Consensus 22 avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~~~ 65 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGN-FVKVYSTATGECI-----------------------TSLEDHT------------APLTSVIV 65 (792)
T ss_pred cccccCCcEEEEeeCC-EEEEEecchHhhh-----------------------hhccccc------------Cccceeee
Confidence 4689999988777654 9999999988753 5678888 78999999
Q ss_pred eecCCC-cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCccc------CCCC-CeEeec-CCceeeEEcc----CCCeee
Q 015363 121 CQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA------AGNG-PIFGSH-VSAIPKSYMA----NGGCGE 187 (408)
Q Consensus 121 ~p~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~-~v~~~~-~~~~~~~~~~----~~~~l~ 187 (408)
.|.+.. .++.+++.||.|++||...++...++..+...... .... .++... +...-..+++ .+..+.
T Consensus 66 ~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~ 145 (792)
T KOG1963|consen 66 LPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFV 145 (792)
T ss_pred cCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeE
Confidence 887654 57779999999999999999988887766544211 0000 111111 0000001111 011000
Q ss_pred ----------cccccc-cCccccCCC-------CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEE
Q 015363 188 ----------RNFGCA-SNDSSFPPG-------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (408)
Q Consensus 188 ----------~~~~~~-~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (408)
.+.... ...++...+ .+..+.+|. +.... ...+.+.....|...+++.+++|.++++|
T Consensus 146 ~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~-v~~~~---~~~~~~~~~~~Htf~~t~~~~spn~~~~A 221 (792)
T KOG1963|consen 146 LATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYF-VPKHT---KHTSSRDITVHHTFNITCVALSPNERYLA 221 (792)
T ss_pred eeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEE-ecccc---eeeccchhhhhhcccceeEEeccccceEE
Confidence 000000 011111111 122334444 21111 11222222356777799999999999999
Q ss_pred Ee-cCCeEEEEeCCC-CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccc
Q 015363 250 SA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (408)
Q Consensus 250 ~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (408)
+| .||+|.+|.--. .+.... ...+..|...|++++|+++| .+|.+|+..+.+.+|.+.+++. +-++.
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t-----~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qfLPR 290 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSET-----CTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QFLPR 290 (792)
T ss_pred EeccCCcEEEEecccccccccc-----ceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----ccccc
Confidence 99 899999996542 121111 12367899999999999999 9999999999999999999863 22222
Q ss_pred ccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeee
Q 015363 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
- .++|..+.+|||+.+.+.. .|+.|.+-...+ .....++.+
T Consensus 291 L------------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsg 332 (792)
T KOG1963|consen 291 L------------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISG 332 (792)
T ss_pred c------------CCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccC
Confidence 2 4789999999999877765 788999988854 344444444
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.6e-15 Score=135.37 Aligned_cols=273 Identities=12% Similarity=0.184 Sum_probs=159.1
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
...|.-.++|.++||.++++|+|..||+|.+|.--.... +-.-.+.+.-|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~---------- 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH---------- 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc----------
Confidence 356888899999999999999999999999997332110 001124577787
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
..|++++|+++ |.+|++|+..+.+.+|.+.+++ .+.+..- .+.+. .+.++||+...
T Consensus 252 --~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRL--------gs~I~-------~i~vS~ds~~~---- 307 (792)
T KOG1963|consen 252 --DEVNSLSFSSD--GAYLLSGGREGVLVLWQLETGK-KQFLPRL--------GSPIL-------HIVVSPDSDLY---- 307 (792)
T ss_pred --cccceeEEecC--CceEeecccceEEEEEeecCCC-ccccccc--------CCeeE-------EEEEcCCCCeE----
Confidence 66999999755 9999999999999999999987 3333221 12233 57788888765
Q ss_pred ccccCccccCCCCCceeeeceeeecccccccc----ccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVA----GCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (408)
...-.|+.|.+.. ...++..... .+.........+-.+.++++|.-+.++-. ..+.|.+||+.+..
T Consensus 308 --------sl~~~DNqI~li~-~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 308 --------SLVLEDNQIHLIK-ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred --------EEEecCceEEEEe-ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 4444566666533 1111110000 00000001111223344444432222222 44444444443222
Q ss_pred ceeeEee------------------------------------------------------------cCCCcccCCcCCe
Q 015363 266 QSFNIVD------------------------------------------------------------VKPANMEDLTEVI 285 (408)
Q Consensus 266 ~~~~~~~------------------------------------------------------------~~~~~~~~~~~~v 285 (408)
...++.- +...-...|...+
T Consensus 379 ~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~ 458 (792)
T KOG1963|consen 379 TIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF 458 (792)
T ss_pred eeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee
Confidence 1111100 0000123455554
Q ss_pred EEEEEcC-CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeE
Q 015363 286 TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTL 364 (408)
Q Consensus 286 ~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v 364 (408)
...++.+ .....+++++.||.+++|-+...+.. .+....+.+..+-..|...+..++|+.||..|+.+-+++|
T Consensus 459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~------~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~I 532 (792)
T KOG1963|consen 459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI------YKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTI 532 (792)
T ss_pred EEEEEecCcccceeEEeccCCeEEEEEEeccccc------CcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEE
Confidence 4444443 33237899999999999988554322 1111112222222335678999999999999999988899
Q ss_pred EEEECCC
Q 015363 365 KLWDINM 371 (408)
Q Consensus 365 ~~wd~~~ 371 (408)
.+||..+
T Consensus 533 tiwd~~~ 539 (792)
T KOG1963|consen 533 TIWDYDT 539 (792)
T ss_pred EEecCCC
Confidence 9999987
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-15 Score=138.12 Aligned_cols=207 Identities=11% Similarity=0.091 Sum_probs=133.4
Q ss_pred cceeEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+.+++|+|+ |+.|+.++.+ ..|++||+.+++........... . ...|+|||+.+
T Consensus 204 ~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---------~-------~~~wSPDG~~L--- 262 (429)
T PRK01742 204 QPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---------G-------APAFSPDGSRL--- 262 (429)
T ss_pred CccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---------C-------ceeECCCCCEE---
Confidence 56899999765 8888887643 47999999988655443322111 1 47899999977
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 267 (408)
+++...++.+.+|. +.... .. ...+ ..+...+...+|+|||+.|+.+ .++...||+++.....
T Consensus 263 --------a~~~~~~g~~~Iy~-~d~~~----~~-~~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 263 --------AFASSKDGVLNIYV-MGANG----GT-PSQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred --------EEEEecCCcEEEEE-EECCC----CC-eEee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 23344667666664 22111 11 1222 4455567889999999977754 5788888887643333
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
... + .+.. ..+.|+|+| +.|++.+.++ +.+||+.++... .+... .....+
T Consensus 328 ~~~-------l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~~-------------~~~~~~ 377 (429)
T PRK01742 328 ASL-------V-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSST-------------FLDESP 377 (429)
T ss_pred eEE-------e-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecCC-------------CCCCCc
Confidence 322 1 1222 457899999 7887777665 556999887532 11111 012457
Q ss_pred EEccCCCEEEEeC-CCeEEEEECC-CCCCceeeeeecccc
Q 015363 348 KFARNGRHILSRD-YMTLKLWDIN-MDSGPVATFQVHEHL 385 (408)
Q Consensus 348 ~~spdg~~l~s~~-d~~v~~wd~~-~~~~~~~~~~~~~~~ 385 (408)
.|+|||++|+.++ ++.+.+|++. ..++..+.+..|.+.
T Consensus 378 ~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~ 417 (429)
T PRK01742 378 SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ 417 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC
Confidence 8999999999874 5777777652 247888888877764
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.2e-16 Score=130.03 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=140.3
Q ss_pred EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (408)
Q Consensus 39 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (408)
.+++|+.+|..|++|+.||++|||++..... +.....|. ..|.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-----------------------~l~e~~~~------------~eV~DL 192 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-----------------------ILEEIAHH------------AEVKDL 192 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-----------------------hhhhHhhc------------Cccccc
Confidence 7899999999999999999999999765442 34556676 569999
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC--CeeecccccccCc
Q 015363 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG--GCGERNFGCASND 196 (408)
Q Consensus 119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~ 196 (408)
.|+|+ |++|++-+.| ..+||+++++...........+.. +. .+.|+.++ ..+ .
T Consensus 193 ~FS~d--gk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~------~~-------~cRF~~d~~~~~l---------~ 247 (398)
T KOG0771|consen 193 DFSPD--GKFLASIGAD-SARVWSVNTGAALARKTPFSKDEM------FS-------SCRFSVDNAQETL---------R 247 (398)
T ss_pred eeCCC--CcEEEEecCC-ceEEEEeccCchhhhcCCcccchh------hh-------hceecccCCCceE---------E
Confidence 99755 8899999999 999999999855443332111110 00 23333333 111 0
Q ss_pred cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC
Q 015363 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (408)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (408)
+++.....+.|+.|+ +.--......+..+. ......|.+++++++|+++|.| .||.|-+++... -+....+
T Consensus 248 laa~~~~~~~v~~~~-~~~w~~~~~l~~~~~--~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~v---- 319 (398)
T KOG0771|consen 248 LAASQFPGGGVRLCD-ISLWSGSNFLRLRKK--IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYV---- 319 (398)
T ss_pred EEEecCCCCceeEEE-eeeeccccccchhhh--hhccCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEee----
Confidence 113334445566555 222111111111111 1222569999999999999999 999999999983 4444432
Q ss_pred CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
-..|...|+.+.|+|+. +++++.+.|.++.+..+.-.
T Consensus 320 --k~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 320 --KEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred --hhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence 46799999999999999 99999999999998877653
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=1.9e-13 Score=125.15 Aligned_cols=266 Identities=20% Similarity=0.363 Sum_probs=188.3
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
...|...|.++.+.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~--------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD--------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence 457899999999999999999999999999999876631 1233444221
Q ss_pred cccceeEEEEeecCCCc-EEEEEe-CCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 111 IEEKINKIRWCQSANSA-LYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~-~l~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
..+..+.+. .+++. .++..+ .|+.+.+|+... .........+.. .+. .+.++|++..+
T Consensus 110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~v~-------~~~~~~~~~~~- 170 (466)
T COG2319 110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE--------SVT-------SLAFSPDGKLL- 170 (466)
T ss_pred --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcc--------cEE-------EEEECCCCCEE-
Confidence 246777774 45565 455544 499999999997 555555444432 232 58999999866
Q ss_pred cccccccCccccCCCC-CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCC
Q 015363 188 RNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 264 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~ 264 (408)
++++. ++.+++|+ +.. ......+ ..|...+.+++|+|++. .++++ .|+.|++||.. .
T Consensus 171 -----------~~~~~~~~~~~~~~-~~~------~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~ 230 (466)
T COG2319 171 -----------ASGSSLDGTIKLWD-LRT------GKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-T 230 (466)
T ss_pred -----------EecCCCCCceEEEE-cCC------CceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-C
Confidence 66665 99999999 433 2233332 56889999999999998 56664 89999999887 3
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
...... .+..|.... ...|+|++ .++++++.|+.+++|+++..... +..+.+| ...|
T Consensus 231 ~~~~~~------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~------------~~~v 287 (466)
T COG2319 231 GKLLRS------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTLSGH------------SSSV 287 (466)
T ss_pred CcEEee------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEEecC------------CccE
Confidence 333331 156666664 34899999 88999999999999999976531 1222233 4789
Q ss_pred EEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeee--ecccccceEE
Q 015363 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKVM 390 (408)
Q Consensus 345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~--~~~~~~~~~~ 390 (408)
.++.|+|++..+++++ |+.+.+|++.+ ........ .|......+.
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCceEEEE
Confidence 9999999888888874 68899999987 45555554 6666433333
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=6.5e-16 Score=135.29 Aligned_cols=217 Identities=14% Similarity=0.191 Sum_probs=151.7
Q ss_pred eeeccceEEEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 32 ~~h~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
+.....|+.++|+| |...||+++.||.|+||.+..+... .+.......+.+|.
T Consensus 624 l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~----------------e~~~tPe~~lt~h~---------- 677 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP----------------ENEMTPEKILTIHG---------- 677 (1012)
T ss_pred cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC----------------cccCCcceeeeccc----------
Confidence 44667899999999 6789999999999999998876531 23334456788888
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
.+|++++|+|-.. +.|++++.|-+|++||+.+.+....+..|.. .|+ .++|+|+|+.+
T Consensus 678 --eKI~slRfHPLAa-dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd--------qIf-------~~AWSpdGr~~---- 735 (1012)
T KOG1445|consen 678 --EKITSLRFHPLAA-DVLAVASYDSTIELWDLANAKLYSRLVGHTD--------QIF-------GIAWSPDGRRI---- 735 (1012)
T ss_pred --ceEEEEEecchhh-hHhhhhhccceeeeeehhhhhhhheeccCcC--------cee-------EEEECCCCcce----
Confidence 8899999998543 4899999999999999999887777776643 455 79999999998
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e----cCCeEEEEeCCCCC
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A----DDLRINLWNLEISN 265 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~----~d~~i~iwd~~~~~ 265 (408)
++...||.|++|+ ....+... +.-...-..+--.|.|.-+|+++++ | +...|.+||.++-.
T Consensus 736 --------AtVcKDg~~rVy~-Prs~e~pv-----~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 736 --------ATVCKDGTLRVYE-PRSREQPV-----YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred --------eeeecCceEEEeC-CCCCCCcc-----ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 9999999999998 43322211 1000001122334667789988876 4 35678888877432
Q ss_pred -ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 266 -QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 266 -~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
..+.+.. +.. ...+.--.+.+|...+|++|-.|..|.+|.+-...
T Consensus 802 ~~pl~t~~-----lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 802 LRPLYTQV-----LDV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred CCcceeee-----ecc-cCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 1222111 111 11122234566765788999999999999986553
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=2.5e-14 Score=134.32 Aligned_cols=294 Identities=12% Similarity=0.147 Sum_probs=168.8
Q ss_pred cCcccceeeecccCcCcccceeeccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc
Q 015363 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (408)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (408)
.++..|+..... ......|...|..++.++. +.+++|||.||+|++|+.......+ ..+
T Consensus 1029 ~p~~gW~p~G~l----VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----------------~s~ 1088 (1431)
T KOG1240|consen 1029 SPPPGWNPRGIL----VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----------------GSA 1088 (1431)
T ss_pred CCCCCCCccceE----eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----------------cee
Confidence 345557776432 2245678899999998876 5999999999999999986543210 011
Q ss_pred ceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEee
Q 015363 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (408)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (408)
+...++.... .++.++..++. ++.+|+++.||.|++.++.....................|.+..
T Consensus 1089 rS~ltys~~~------------sr~~~vt~~~~--~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~- 1153 (1431)
T KOG1240|consen 1089 RSELTYSPEG------------SRVEKVTMCGN--GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVS- 1153 (1431)
T ss_pred eeeEEEeccC------------CceEEEEeccC--CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEE-
Confidence 1112222122 66888888755 77999999999999999986321111000000000001222221
Q ss_pred cCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE
Q 015363 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (408)
.-++....+- ..++.+...+.|..|| ..........+ .....+.|++++.+|.+++++.
T Consensus 1154 -----m~a~~~~~~S----------~~lvy~T~~~~iv~~D-~r~~~~~w~lk-----~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1154 -----MHAFTAIVQS----------HVLVYATDLSRIVSWD-TRMRHDAWRLK-----NQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred -----eecccccccc----------eeEEEEEeccceEEec-chhhhhHHhhh-----cCccccceeEEEecCCceEEEE
Confidence 1111111110 1236677778889999 43322111111 1233477999999999999999
Q ss_pred e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC--ceEEEEe--CCCeEEEEEcCCCceeccccccc
Q 015363 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSS--SKGSIRLIDMRQSALCDTHSKLF 325 (408)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~ 325 (408)
| ..|.+.+||++ .+..+... -..+..+++.+..+|..+ ...++++ ..+.|.+|++.++... .++
T Consensus 1213 Gts~G~l~lWDLR-F~~~i~sw------~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~----~vl 1281 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLR-FRVPILSW------EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ----TVL 1281 (1431)
T ss_pred ecCCceEEEEEee-cCceeecc------cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce----EEE
Confidence 9 89999999999 44444332 123447778888777653 4444444 4789999999988432 222
Q ss_pred ccc-cCCCCcccc------ccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCC
Q 015363 326 EEQ-EAPGTRSFF------TEIIASISDIKFARNGRHILSR-DYMTLKLWDINMD 372 (408)
Q Consensus 326 ~~~-~~~~~~~~~------~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~ 372 (408)
-.. ..+...... ..+.-......+..-+.++.+| +|..|+.||...+
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 111 111110000 0111122223333334566665 6899999999764
No 193
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.1e-14 Score=118.88 Aligned_cols=272 Identities=14% Similarity=0.133 Sum_probs=179.7
Q ss_pred eeeccceEEEEECCCCC--eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 32 VQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~--~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
+.....|+.++|.-+++ .|...+.+..+..+.+...... ++...........
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-----------------s~~~~~~~~~l~~--------- 105 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-----------------SSLDDAKTVSLGT--------- 105 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCccc-----------------ccccccccccccc---------
Confidence 44567788888887654 4444446667777776655432 1100111122222
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-----EEeccCCCCcccCCCCCeEeecCCceeeEEccCCC
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-----KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (408)
.+|..++. .|| .|++|-.+|.+.+|..+.+... ....+. .++ .+.-.+...
T Consensus 106 ---~~I~gl~~---~dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~----------g~~-------~~r~~~~~p 161 (412)
T KOG3881|consen 106 ---KSIKGLKL---ADG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP----------GLY-------DVRQTDTDP 161 (412)
T ss_pred ---ccccchhh---cCC-EEEEEecCCcEEEEeccCCccccccceeeecCC----------cee-------eeccCCCCC
Confidence 56777776 344 7889999999999999855421 111110 011 233333333
Q ss_pred eeecccccccCccccCCCCC--ceeeeceeeeccccccccccceeecc--ccccceEEEEeCCC--CCEEEEe-cCCeEE
Q 015363 185 CGERNFGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAH--AHDYHINSISNNSD--GETFISA-DDLRIN 257 (408)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~--~~~l~~~-~d~~i~ 257 (408)
.+ +++|+.. ..+++|| +.........+++..-.. .-.-+++++.|-+. ...||++ .-+.++
T Consensus 162 ~I-----------va~GGke~~n~lkiwd-le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 162 YI-----------VATGGKENINELKIWD-LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred ce-----------EecCchhcccceeeee-cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 33 4668888 8899999 655444333333322111 11235778889887 7899999 899999
Q ss_pred EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (408)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (408)
+||.+....++..+ .-...+++++...|++ +++++|..-+.+..+|++.++... ..+
T Consensus 230 ~YDt~~qRRPV~~f-------d~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g---~~~------------ 286 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQF-------DFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLG---CGL------------ 286 (412)
T ss_pred EecCcccCcceeEe-------ccccCcceeeeecCCC-cEEEEecccchhheecccCceeec---ccc------------
Confidence 99999777777654 3346779999999999 999999999999999999986542 223
Q ss_pred ccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceE
Q 015363 338 TEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKV 389 (408)
Q Consensus 338 ~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 389 (408)
.+..+.|+++..+|.+++|++++ |..|+|+|+.+ .+++............+
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~kvYvKs~lt~il 338 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLHKVYVKSRLTFIL 338 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhhhhhhhccccEEE
Confidence 33368899999999999999997 89999999998 56666554444433333
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.4e-15 Score=128.31 Aligned_cols=205 Identities=22% Similarity=0.324 Sum_probs=143.9
Q ss_pred CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (408)
Q Consensus 48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 127 (408)
..|+.++.||.+.|.+-... ......+|. +.|.+-+|+|+ |.
T Consensus 76 d~~~i~s~DGkf~il~k~~r------------------------VE~sv~AH~------------~A~~~gRW~~d--Gt 117 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR------------------------VERSISAHA------------AAISSGRWSPD--GA 117 (737)
T ss_pred ceEEEEcCCceEEEecccch------------------------hhhhhhhhh------------hhhhhcccCCC--Cc
Confidence 46888899999999885433 234677888 77999999655 88
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (408)
Q Consensus 128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (408)
-|++++.||.|++|.-.. ....+...+ ...++ +++|.|+...+ +++.+..-.|
T Consensus 118 gLlt~GEDG~iKiWSrsG-MLRStl~Q~--------~~~v~-------c~~W~p~S~~v-----------l~c~g~h~~I 170 (737)
T KOG1524|consen 118 GLLTAGEDGVIKIWSRSG-MLRSTVVQN--------EESIR-------CARWAPNSNSI-----------VFCQGGHISI 170 (737)
T ss_pred eeeeecCCceEEEEeccc-hHHHHHhhc--------CceeE-------EEEECCCCCce-----------EEecCCeEEE
Confidence 899999999999998543 222222111 22355 78999988765 3444443333
Q ss_pred eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (408)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (408)
+-.. ...+.++ ..+|++-|.++.|++..+++++| .|-..++||-. +...++ ...|.-+|+
T Consensus 171 KpL~--------~n~k~i~--WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~--------S~~~ey~IT 231 (737)
T KOG1524|consen 171 KPLA--------ANSKIIR--WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFT--------SAAEEYAIT 231 (737)
T ss_pred eecc--------cccceeE--EeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccccc--------CChhcccee
Confidence 3211 1111111 47999999999999999999999 99999999998 555543 466889999
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEE
Q 015363 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK 365 (408)
Q Consensus 287 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~ 365 (408)
+++|+|+. .++.++. .++++=..+ .+.|..++||+||..++.|. .|.+.
T Consensus 232 Sva~npd~--~~~v~S~-nt~R~~~p~---------------------------~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 232 SVAFNPEK--DYLLWSY-NTARFSSPR---------------------------VGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eeeecccc--ceeeeee-eeeeecCCC---------------------------ccceEEEEEcCCCceeeccccCceEE
Confidence 99999994 6666653 234421111 26799999999999999984 46654
Q ss_pred E
Q 015363 366 L 366 (408)
Q Consensus 366 ~ 366 (408)
+
T Consensus 282 ~ 282 (737)
T KOG1524|consen 282 V 282 (737)
T ss_pred E
Confidence 4
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=8.6e-15 Score=118.49 Aligned_cols=283 Identities=14% Similarity=0.179 Sum_probs=166.0
Q ss_pred ccceEEEEECCCCCeEE-EeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~-sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-+.|.-+.|..|..+++ ....++.|.+|++...+. ....+... +
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----------------------~ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----------------------YCKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----------------------EEEeccCC------------C
Confidence 46677889998876555 456788999999876542 23344444 7
Q ss_pred ceeEEEEeecCCC-cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 114 KINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 114 ~v~~v~~~p~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
++.+++|+|+ | ..|.+...|-.|.+|.+.+.+...+..... .+. .++|+|+|++.+.+...
T Consensus 93 gls~~~WSPd--grhiL~tseF~lriTVWSL~t~~~~~~~~pK~---------~~k-------g~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 93 GLSSISWSPD--GRHILLTSEFDLRITVWSLNTQKGYLLPHPKT---------NVK-------GYAFHPDGQFCAILSRR 154 (447)
T ss_pred cceeeeECCC--cceEeeeecceeEEEEEEeccceeEEeccccc---------Cce-------eEEECCCCceeeeeecc
Confidence 7999999866 7 466667789999999999887654332211 111 57999999986332222
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 272 (408)
...+++-.. .-+-|. ..+.+ .-..-..+.+.|+|||+.||+ ||.-..-+.. .
T Consensus 155 DCkdyv~i~----~c~~W~------------ll~~f-~~dT~DltgieWsPdg~~laV--------wd~~Leykv~-a-- 206 (447)
T KOG4497|consen 155 DCKDYVQIS----SCKAWI------------LLKEF-KLDTIDLTGIEWSPDGNWLAV--------WDNVLEYKVY-A-- 206 (447)
T ss_pred cHHHHHHHH----hhHHHH------------HHHhc-CCCcccccCceECCCCcEEEE--------ecchhhheee-e--
Confidence 211110000 000111 11111 223345778999999988874 4433111111 1
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec---------------------cccc--------
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD---------------------THSK-------- 323 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~~-------- 323 (408)
. .-.-.+..++|+|.+ ++|+.|+.|+.+|+.+--+.+... .++.
T Consensus 207 -----Y-e~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 207 -----Y-ERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred -----e-eeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 0 112457789999999 999999999999986532221100 0000
Q ss_pred ---ccccccCCC-------------------CccccccccceeEEEEEccCCCEEEEeCC---CeEEEEECCCCCCceee
Q 015363 324 ---LFEEQEAPG-------------------TRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVAT 378 (408)
Q Consensus 324 ---~~~~~~~~~-------------------~~~~~~~h~~~i~~~~~spdg~~l~s~~d---~~v~~wd~~~~~~~~~~ 378 (408)
.+..|.-+. +.. +..-...+.-++|++|..|+++-.| +.+.+||+++ .+....
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD-~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~av 357 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD-FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAV 357 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCC-CCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhh
Confidence 000000000 000 1111356788999999999999854 8999999986 344444
Q ss_pred eeecccccceEEecCCCeeeeeeceeeec
Q 015363 379 FQVHEHLRPKVMHSSKNYFMGLDNIHTLY 407 (408)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 407 (408)
+......|...+++-..+++.....-+||
T Consensus 358 LiQk~piraf~WdP~~prL~vctg~srLY 386 (447)
T KOG4497|consen 358 LIQKHPIRAFEWDPGRPRLVVCTGKSRLY 386 (447)
T ss_pred hhhccceeEEEeCCCCceEEEEcCCceEE
Confidence 44333445566666666666555555555
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.9e-14 Score=133.11 Aligned_cols=263 Identities=15% Similarity=0.198 Sum_probs=164.8
Q ss_pred ccceEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 35 VDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 35 ~~~V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
...|+.+.+-. |..++.+|+.||.|+||+-..... ...++++.+.+-++. +.. ...
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~------------------~~~eLVTaw~~Ls~~---~~~-~r~ 1166 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW------------------KKPELVTAWSSLSDQ---LPG-ARG 1166 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEeccccccc------------------CCceeEEeecccccc---Ccc-CCC
Confidence 45688888765 456899999999999997332210 012233333322110 000 000
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceee-EEccCCCeeecccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK-SYMANGGCGERNFG 191 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~l~~~~~ 191 (408)
.. .-+.|.. ..| +|++++.-+.|+|||.....+..-....... .+. ++ +....|..+
T Consensus 1167 ~~-~v~dWqQ-~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t-------~vT-------aLS~~~~~gn~i----- 1224 (1387)
T KOG1517|consen 1167 TG-LVVDWQQ-QSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSST-------LVT-------ALSADLVHGNII----- 1224 (1387)
T ss_pred CC-eeeehhh-hCC-eEEecCCeeEEEEEecccceeEeecccCCCc-------cce-------eecccccCCceE-----
Confidence 11 4467753 334 6777777899999999987665543332111 111 11 112234444
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccc--eEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCce
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH--INSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
++|-.||.|++|| .+-... ...+.. ...|... |..+.+.+.|- .|++| .+|.|++||++.. ..
T Consensus 1225 -------~AGfaDGsvRvyD-~R~a~~---ds~v~~-~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~ 1291 (1387)
T KOG1517|consen 1225 -------AAGFADGSVRVYD-RRMAPP---DSLVCV-YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SK 1291 (1387)
T ss_pred -------EEeecCCceEEee-cccCCc---ccccee-ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cc
Confidence 9999999999999 332111 122222 2667666 99999998774 48888 9999999999953 22
Q ss_pred eeEeecCCCcccCCc--C-CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363 268 FNIVDVKPANMEDLT--E-VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~--~-~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
..... +..|. + .++++..++.. .++|+|+. +.|+||++..... ..+..+ ..++..-.+.+
T Consensus 1292 e~~~~-----iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l-----~~~k~n-----~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1292 ETFLT-----IVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQL-----NIIKYN-----PGFMGQRIGSV 1354 (1387)
T ss_pred cccce-----eeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhh-----cccccC-----cccccCcCCCc
Confidence 22211 22222 3 48999999999 89999988 9999999976543 223222 11222234678
Q ss_pred EEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 345 SDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
.+++|+|.-.+||+|+ |.+|.||....
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecCC
Confidence 9999999988999995 69999998865
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3.6e-15 Score=128.89 Aligned_cols=222 Identities=14% Similarity=0.150 Sum_probs=141.0
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.+.+|.++|.|+++.+++..+++|+-||+|+.|++...... .+ .+-.......+.||.
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp------~d-------s~dp~vl~~~l~Ght--------- 396 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP------DD-------SYDPSVLSGTLLGHT--------- 396 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc------cc-------ccCcchhccceeccc---------
Confidence 45689999999999999999999999999999987632210 00 000112334678888
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+.|..+++++.+ ..|++++.||+++.|+...... .++...... +. +..+.+......+
T Consensus 397 ---davw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~------g~-------Plsvd~~ss~~a~--- 454 (577)
T KOG0642|consen 397 ---DAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH------GY-------PLSVDRTSSRPAH--- 454 (577)
T ss_pred ---cceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCcccc------CC-------cceEeeccchhHh---
Confidence 889999998764 4899999999999999887665 222211110 00 0012221111000
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceee---ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY---AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (408)
.++....+.-.+++ .+....-...... .......++-+.++|...+.+++ .|+.|+++|..+..
T Consensus 455 --------~~~s~~~~~~~~~~----~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 455 --------SLASFRFGYTSIDD----MEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred --------hhhhcccccccchh----hhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 01111111111111 1110000000000 01112457778899999999999 99999999998554
Q ss_pred ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
.... ...|...++++++.|+| -+|++++.|+.+++|.+....
T Consensus 523 ~l~s--------~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 523 ILHS--------MVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cchh--------eeeccceecceeecCCC-ceEEeecCCceeehhhccchh
Confidence 4432 56788999999999999 899999999999999987653
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=4.2e-13 Score=108.39 Aligned_cols=238 Identities=13% Similarity=0.178 Sum_probs=147.1
Q ss_pred eEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (408)
Q Consensus 38 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (408)
..+++|+.|..-+++|..+| .+||+.+.-... ...+.+.+- -.+..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-----------------------~~r~~~~~G----------~~~ve 53 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----------------------ASRQFIDGG----------FKIVE 53 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhh-----------------------hhhccccCc----------hhhhh
Confidence 34599999988888887765 899998743321 011111100 11333
Q ss_pred EEEeecCCCcEEEE-EeC------CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 118 IRWCQSANSALYLL-STN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 118 v~~~p~~~~~~l~~-~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
+-| ..| ++|. |+. -+.|.|||=...++...+.... .|. .+.+.++.
T Consensus 54 MLf--R~N--~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~---------~I~-------~V~l~r~r------- 106 (346)
T KOG2111|consen 54 MLF--RSN--YLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNS---------EIK-------AVKLRRDR------- 106 (346)
T ss_pred Hhh--hhc--eEEEecCCCCCCCCCceEEEEecccCcEEEEEEecc---------cee-------eEEEcCCe-------
Confidence 334 222 4443 332 2479999966666666555532 233 34444443
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE-e-cCCeEEEEeCCCCCce-
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQS- 267 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~- 267 (408)
++.-..+.|.+|. ....-. ...+..+ ......+.+++-+-+..+||. | .-|.|+|-|+......
T Consensus 107 --------iVvvl~~~I~Vyt-F~~n~k--~l~~~et--~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~ 173 (346)
T KOG2111|consen 107 --------IVVVLENKIYVYT-FPDNPK--LLHVIET--RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA 173 (346)
T ss_pred --------EEEEecCeEEEEE-cCCChh--heeeeec--ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC
Confidence 2223456677776 321100 0001111 111223444443334455554 4 6799999999854431
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe-EEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
..+ +..|...|.|++.+-+| .++|+++..|+ |||||..++..+ .++..... ...|.+
T Consensus 174 p~~-------I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l----~E~RRG~d----------~A~iy~ 231 (346)
T KOG2111|consen 174 PSI-------INAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL----QELRRGVD----------RADIYC 231 (346)
T ss_pred ceE-------EEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe----eeeecCCc----------hheEEE
Confidence 122 67899999999999999 99999999886 899999999765 44433211 257999
Q ss_pred EEEccCCCEEEEeCC-CeEEEEECCC
Q 015363 347 IKFARNGRHILSRDY-MTLKLWDINM 371 (408)
Q Consensus 347 ~~~spdg~~l~s~~d-~~v~~wd~~~ 371 (408)
++||||+.+|++++| |+|.||.++.
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999998 9999999975
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.3e-14 Score=130.17 Aligned_cols=218 Identities=11% Similarity=0.151 Sum_probs=138.0
Q ss_pred eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
..|...|.+++|||||+.||..+.+ ..|++||+.++... .+..+.+|
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~---------------------~l~~~~g~--------- 249 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK---------------------VVASFRGH--------- 249 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE---------------------EEecCCCc---------
Confidence 4567789999999999999988754 36999998776421 22223333
Q ss_pred cccccceeEEEEeecCCCcEEEEEe-CCCeEEEE--EcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363 109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLW--KVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
...++|+|+ |+.|+.++ .+|.+.|| |+.+++........ +.+. ...|+|||+.
T Consensus 250 ------~~~~~wSPD--G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------~~~~-------~~~wSpDG~~ 305 (429)
T PRK01742 250 ------NGAPAFSPD--GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA---------GNNT-------EPSWSPDGQS 305 (429)
T ss_pred ------cCceeECCC--CCEEEEEEecCCcEEEEEEECCCCCeEeeccCC---------CCcC-------CEEECCCCCE
Confidence 346899755 88888764 68866655 66666544432211 1111 5799999997
Q ss_pred eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCC
Q 015363 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~ 264 (408)
+ +++...++...+|+ +...... ... . .+.. ...+|+|+|+.++.. .+ .+.+||+.++
T Consensus 306 i-----------~f~s~~~g~~~I~~-~~~~~~~-----~~~-l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g 363 (429)
T PRK01742 306 I-----------LFTSDRSGSPQVYR-MSASGGG-----ASL-V-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSG 363 (429)
T ss_pred E-----------EEEECCCCCceEEE-EECCCCC-----eEE-e-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCC
Confidence 6 34555677888887 4321110 111 1 2222 357899999999887 54 4666999844
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC--CCceecccccccccccCCCCccccccccc
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (408)
.. ..+ ...+ ....+.|+|+| ++|++++.++.+.+|++. .+... +.+..+ .+
T Consensus 364 ~~-~~l-------t~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~~----~~l~~~------------~g 416 (429)
T PRK01742 364 ST-EVL-------SSTF--LDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRFK----ARLPGS------------DG 416 (429)
T ss_pred Ce-EEe-------cCCC--CCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCce----EEccCC------------CC
Confidence 32 221 1111 12467899999 899999889988888763 33222 444444 35
Q ss_pred eeEEEEEccC
Q 015363 343 SISDIKFARN 352 (408)
Q Consensus 343 ~i~~~~~spd 352 (408)
.+...+|+|-
T Consensus 417 ~~~~p~wsp~ 426 (429)
T PRK01742 417 QVKFPAWSPY 426 (429)
T ss_pred CCCCcccCCC
Confidence 6788899983
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1.4e-14 Score=124.67 Aligned_cols=176 Identities=12% Similarity=0.177 Sum_probs=128.6
Q ss_pred cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (408)
Q Consensus 127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (408)
+.|+.++.||.+.+.+-. ++.......|. +.+. +-.|+|+|.-+ ++.++||.
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE~sv~AH~--------~A~~-------~gRW~~dGtgL------------lt~GEDG~ 127 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVERSISAHA--------AAIS-------SGRWSPDGAGL------------LTAGEDGV 127 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhhhhhhhhh--------hhhh-------hcccCCCCcee------------eeecCCce
Confidence 478899999999987643 33333333321 2222 56799999998 99999999
Q ss_pred eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (408)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (408)
|++|. -.+ ..+.+ +......|+|++|.|+.+.++-+..+.+.|=.+....+.++ ...|.+-|.
T Consensus 128 iKiWS-rsG-------MLRSt-l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL 190 (737)
T KOG1524|consen 128 IKIWS-RSG-------MLRST-VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVL 190 (737)
T ss_pred EEEEe-ccc-------hHHHH-HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEE
Confidence 99998 222 22222 23445789999999999888888667777776664444443 678999999
Q ss_pred EEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEE
Q 015363 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL 366 (408)
Q Consensus 287 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~ 366 (408)
++.|+|.. .++++|+.|-..++||.....+ ..-..| .-+|++++|.|| +.++.++.+++++
T Consensus 191 ~~~W~~~s-~lI~sgGED~kfKvWD~~G~~L-----f~S~~~------------ey~ITSva~npd-~~~~v~S~nt~R~ 251 (737)
T KOG1524|consen 191 SLSWSTQS-NIIASGGEDFRFKIWDAQGANL-----FTSAAE------------EYAITSVAFNPE-KDYLLWSYNTARF 251 (737)
T ss_pred EeecCccc-cceeecCCceeEEeecccCccc-----ccCChh------------ccceeeeeeccc-cceeeeeeeeeee
Confidence 99999999 9999999999999999865422 343444 357999999999 6666676666664
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2e-13 Score=112.05 Aligned_cols=262 Identities=13% Similarity=0.153 Sum_probs=159.4
Q ss_pred ccceEEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 35 VDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 35 ~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
...|+|++|-|. +.-|+.|++.| |.||..+.....+..++-+.... -.+....+| -
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~---------~qvl~~pgh-------------~ 196 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHH---------LQVLQDPGH-------------N 196 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccc---------hhheeCCCC-------------c
Confidence 457999999996 66899998874 78998764432111111000000 001122333 4
Q ss_pred ceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 114 KINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
+|+++.|. +||..+++++ .|..|.|||..++......... .+.+. .+.|+|||..+
T Consensus 197 pVtsmqwn--~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--------lgg~s-------lLkwSPdgd~l------ 253 (445)
T KOG2139|consen 197 PVTSMQWN--EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--------LGGFS-------LLKWSPDGDVL------ 253 (445)
T ss_pred eeeEEEEc--CCCCEEeecccCcceEEEEcCCCCCcccccccC--------CCcee-------eEEEcCCCCEE------
Confidence 69999995 5588999887 6789999999999877665222 12222 58999999998
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceee---
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN--- 269 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~--- 269 (408)
+++.-|+..++|+ ..+.-.... . .-..+.|....|+|.|++|.-+..+.-++|.+.-.++...
T Consensus 254 ------faAt~davfrlw~-e~q~wt~er----w---~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~ 319 (445)
T KOG2139|consen 254 ------FAATCDAVFRLWQ-ENQSWTKER----W---ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLR 319 (445)
T ss_pred ------EEecccceeeeeh-hcccceecc----e---eccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccC
Confidence 9999999999996 333221111 1 1222489999999999988776444445565542222111
Q ss_pred ---------EeecCCCcccCC----cCCeEEEEEcCCCCceEEEEeCCC--------eEEEEEcCCCceecccccccccc
Q 015363 270 ---------IVDVKPANMEDL----TEVITSAEFHPTHCNMLAYSSSKG--------SIRLIDMRQSALCDTHSKLFEEQ 328 (408)
Q Consensus 270 ---------~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~ 328 (408)
+.++...+.... .+.+.+++|+|.| .+||+.-..+ .|.+||.+..-.+.-...-+.+.
T Consensus 320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g 398 (445)
T KOG2139|consen 320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG 398 (445)
T ss_pred cccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC
Confidence 111111111111 4667899999999 8888765433 46778877543321000011111
Q ss_pred cCCCCccccccccceeEEEEEcc---CCCEEEEe-CCCeEEEEECC
Q 015363 329 EAPGTRSFFTEIIASISDIKFAR---NGRHILSR-DYMTLKLWDIN 370 (408)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~~~~sp---dg~~l~s~-~d~~v~~wd~~ 370 (408)
.....++|+| +|.+|..+ +.|.+.-|++.
T Consensus 399 -------------e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 399 -------------EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred -------------CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1134466666 67788888 56888888875
No 202
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=5.5e-14 Score=112.32 Aligned_cols=116 Identities=16% Similarity=0.369 Sum_probs=87.0
Q ss_pred ccceEEEEeCCCCCEEEE--e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCe
Q 015363 233 DYHINSISNNSDGETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGS 306 (408)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~ 306 (408)
.+.|.+++|+|+|+.||+ | .+..|.+||++ ...... + +...+..+.|+|+| ++|++++. .|.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCcE
Confidence 356999999999998765 4 57899999997 333332 2 24567889999999 88888764 467
Q ss_pred EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C-----CCeEEEEECCCCCCceeee
Q 015363 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D-----YMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~-----d~~v~~wd~~~~~~~~~~~ 379 (408)
|.+||+++.+.+ ...+. ..+..++|+|||++|+++ . |+.++||+.. |+.+...
T Consensus 127 l~~wd~~~~~~i----~~~~~--------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~~~ 186 (194)
T PF08662_consen 127 LEFWDVRKKKKI----STFEH--------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLYKK 186 (194)
T ss_pred EEEEECCCCEEe----ecccc--------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeEec
Confidence 999999977543 33322 347899999999999986 2 5889999994 6666554
Q ss_pred e
Q 015363 380 Q 380 (408)
Q Consensus 380 ~ 380 (408)
.
T Consensus 187 ~ 187 (194)
T PF08662_consen 187 P 187 (194)
T ss_pred c
Confidence 3
No 203
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=2.2e-12 Score=118.07 Aligned_cols=255 Identities=20% Similarity=0.379 Sum_probs=177.2
Q ss_pred cceeeccceEEEEECCCCCeEEEeec-CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
....|...|.+++|+|++.++++++. ++.+++|+..... ....+.+|.
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~-------- 198 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----------------------PLSTLAGHT-------- 198 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----------------------eEEeeccCC--------
Confidence 45679999999999999998999885 9999999987633 234566677
Q ss_pred cccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEE-EeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
..|.+++|+|. +. .+++++.|+.|++||...+.... .+..+... . . ..|++++..+
T Consensus 199 ----~~v~~~~~~~~--~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-------~-~--------~~~~~~~~~~ 256 (466)
T COG2319 199 ----DPVSSLAFSPD--GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-------V-V--------SSFSPDGSLL 256 (466)
T ss_pred ----CceEEEEEcCC--cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-------e-e--------EeECCCCCEE
Confidence 77999999744 65 45555999999999888666665 34333221 0 1 1688888665
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (408)
++++.++.+++|+ +..... ..... ..|...+.++.|+|++..++++ .|+.+.+||.....
T Consensus 257 ------------~~~~~d~~~~~~~-~~~~~~-----~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 257 ------------ASGSSDGTIRLWD-LRSSSS-----LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred ------------EEecCCCcEEEee-ecCCCc-----EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 7899999999999 443222 12222 5678899999999988888887 67889999888444
Q ss_pred ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
...... ...|...+..+.|.+++ ..++.+ ..|+.+.+|++...... ...... ..+
T Consensus 318 ~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~-------------~~~ 373 (466)
T COG2319 318 LLSSLT------LKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKPL----KTLEGH-------------SNV 373 (466)
T ss_pred eEEEee------ecccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCcee----EEecCC-------------ceE
Confidence 333221 23566678899994342 344444 67899999999876411 121111 227
Q ss_pred EEEEEccCCCEEEE-e-CCCeEEEEECCCCCCceeeeeec
Q 015363 345 SDIKFARNGRHILS-R-DYMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 345 ~~~~~spdg~~l~s-~-~d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
..+.+++ ...+++ + .++.+.+|+... .........+
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 411 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLST-GSLLRNLDGH 411 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEeccc-CeeeeeccCC
Confidence 8889988 544444 4 469999999987 4555555444
No 204
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.7e-14 Score=116.13 Aligned_cols=227 Identities=11% Similarity=0.188 Sum_probs=148.2
Q ss_pred cceeeccceEEEEECC--CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363 30 EEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (408)
+...|...++.++|.. ....+.+|+.||+|++||+...... ....+..+.+
T Consensus 65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~---------------------a~~~~~~~~~------ 117 (376)
T KOG1188|consen 65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES---------------------ARISWTQQSG------ 117 (376)
T ss_pred eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh---------------------hheeccCCCC------
Confidence 4556788888999987 4678999999999999999876542 1122333321
Q ss_pred ccccccceeEEEEeecCCCcEEEEEe----CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC
Q 015363 108 SLEIEEKINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (408)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (408)
.+-.+++. +.++..+++|. .|-.|.+||++..+..
T Consensus 118 -----~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------------------------- 156 (376)
T KOG1188|consen 118 -----TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQL---------------------------------- 156 (376)
T ss_pred -----CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccch----------------------------------
Confidence 23445554 33455666653 4556667776644311
Q ss_pred CeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeC
Q 015363 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 261 (408)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~ 261 (408)
++.+...|...|+++.|+|.. ++|++| .||.|.+||+
T Consensus 157 -----------------------------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 157 -----------------------------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred -----------------------------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 111237888999999999976 788888 8999999999
Q ss_pred CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec---cc-------------cccc
Q 015363 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD---TH-------------SKLF 325 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~-------------~~~~ 325 (408)
......-.+. ..-.|...|.++.|..++-..+.+-+...+..+|+++.+.... ++ .+.+
T Consensus 196 ~~d~EeDaL~-----~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 196 KKDNEEDALL-----HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred CCCcchhhHH-----HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 8543221111 1234667799999998874568888889999999987663210 00 0011
Q ss_pred cccc-----------------------------CCCCcccccc-ccceeEEEEEccCCCEEEEeC-CCeEEEEECC
Q 015363 326 EEQE-----------------------------APGTRSFFTE-IIASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (408)
Q Consensus 326 ~~~~-----------------------------~~~~~~~~~~-h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~ 370 (408)
..|. .......+++ |..-|+++.|...+.++.+|+ ||.+.+|...
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 1110 0011222343 667788888888889999986 7999999953
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=2.7e-12 Score=113.18 Aligned_cols=216 Identities=12% Similarity=0.139 Sum_probs=128.7
Q ss_pred ceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 114 KINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
....++++|+ +++|++++ .++.|.+|++.. +.......... . ..+..+.++|+++.+
T Consensus 36 ~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-------~-------~~p~~i~~~~~g~~l----- 94 (330)
T PRK11028 36 QVQPMVISPD--KRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-------P-------GSPTHISTDHQGRFL----- 94 (330)
T ss_pred CCccEEECCC--CCEEEEEECCCCcEEEEEECCCCceEEeeeecC-------C-------CCceEEEECCCCCEE-----
Confidence 3667889654 77776654 688999999973 33322211110 0 012258999999987
Q ss_pred cccCccccC-CCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCcee
Q 015363 192 CASNDSSFP-PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSF 268 (408)
Q Consensus 192 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~ 268 (408)
++ ...++.|.+|+ +..... . ......+ .+......++++|++++++++ .++.|.+||++..+...
T Consensus 95 -------~v~~~~~~~v~v~~-~~~~g~-~-~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 95 -------FSASYNANCVSVSP-LDKDGI-P-VAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred -------EEEEcCCCeEEEEE-ECCCCC-C-CCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 44 34578999998 532111 1 1111111 122346778899999988765 68999999998533221
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCC--ceecccccccccccCCCCccccccccceeE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQS--ALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (408)
.... ....... ......+.|+|++ ++++++.. +++|.+|++... .. +.+..+..... .+. +.....
T Consensus 163 ~~~~-~~~~~~~-g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~~~~p~-----~~~-~~~~~~ 231 (330)
T PRK11028 163 AQEP-AEVTTVE-GAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEI--ECVQTLDMMPA-----DFS-DTRWAA 231 (330)
T ss_pred ccCC-CceecCC-CCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCE--EEEEEEecCCC-----cCC-CCccce
Confidence 1000 0000111 2335789999999 77766665 899999999742 21 11122211100 000 012345
Q ss_pred EEEEccCCCEEEEeC--CCeEEEEECCCCC
Q 015363 346 DIKFARNGRHILSRD--YMTLKLWDINMDS 373 (408)
Q Consensus 346 ~~~~spdg~~l~s~~--d~~v~~wd~~~~~ 373 (408)
.+.|+|+|++|+++. ++.|.+|+++..+
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 689999999999883 4899999997643
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=9.2e-14 Score=109.21 Aligned_cols=261 Identities=14% Similarity=0.153 Sum_probs=150.3
Q ss_pred CcccceeeecccCcCccc-ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCC----------CCCccccccccc
Q 015363 13 QPLEWKFSQVFGERTAGE-EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD----------NGGQRRDLEMMD 81 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~-~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~----------~~~~~~~~~~~~ 81 (408)
-...|.+.. ++.... ...|...|+.+..-|++ .|.+-++|+.+.+|++..... .+.|+..+....
T Consensus 36 ~V~~w~lqt---~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~ 111 (323)
T KOG0322|consen 36 IVKMWVLQT---ERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKP 111 (323)
T ss_pred eEEEEEeec---CccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCC
Confidence 344566664 222222 23578899999999885 488888999999999986331 123333221111
Q ss_pred cc---ccCCCccceeeeeccCCccc------c--cccccccccceeEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEE
Q 015363 82 YS---MSRHPEFRYKTEFQSHEPEF------D--YLKSLEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVK 149 (408)
Q Consensus 82 ~~---~~~~p~~~~~~~~~~h~~~~------~--~~~~~~~~~~v~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 149 (408)
.. ..+.|.-.. ..-|..+. . .-......+.+.+..|--..... ++++|-++|.+.+||+.++...
T Consensus 112 k~~eqll~yp~rgs---de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~ 188 (323)
T KOG0322|consen 112 KNSEQLLEYPSRGS---DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI 188 (323)
T ss_pred CcchhheecCCccc---chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee
Confidence 10 001110000 00000000 0 00001222556666653222222 3455669999999999988433
Q ss_pred EEeccCCCC--cccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeecccccccccccee
Q 015363 150 KVFDWNVHP--EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI 227 (408)
Q Consensus 150 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 227 (408)
..+...... ......+.+. ++.+.+.-..= ++++.+..+..|. +....+.... +.
T Consensus 189 ~~~~~~~kv~~~~ash~qpvl-------sldyas~~~rG------------isgga~dkl~~~S-l~~s~gslq~---~~ 245 (323)
T KOG0322|consen 189 IQLPQSSKVESPNASHKQPVL-------SLDYASSCDRG------------ISGGADDKLVMYS-LNHSTGSLQI---RK 245 (323)
T ss_pred eccccccccccchhhccCcce-------eeeechhhcCC------------cCCCccccceeee-eccccCcccc---cc
Confidence 222211110 0111122233 44554332221 7788888888888 5443221111 11
Q ss_pred eccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363 228 YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (408)
Q Consensus 228 ~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 306 (408)
...-....|..+...||++++|++ .|++|++|+.++. ..+.+ +.-|...|++++|+|+. .++|+++.|++
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAV-------LkyHsagvn~vAfspd~-~lmAaaskD~r 316 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAV-------LKYHSAGVNAVAFSPDC-ELMAAASKDAR 316 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhh-------hhhhhcceeEEEeCCCC-chhhhccCCce
Confidence 112233568889999999999998 9999999999954 44443 67799999999999998 89999999999
Q ss_pred EEEEEc
Q 015363 307 IRLIDM 312 (408)
Q Consensus 307 i~iwd~ 312 (408)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.2e-14 Score=116.62 Aligned_cols=291 Identities=11% Similarity=0.096 Sum_probs=180.3
Q ss_pred CcccceeeecccCcC----cccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCC
Q 015363 13 QPLEWKFSQVFGERT----AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHP 88 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~----~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (408)
-.+.|.+.+..-.+. ......|...|.|++|+...++|++|..+++|.+.|+++.+..
T Consensus 79 ~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi------------------ 140 (609)
T KOG4227|consen 79 HGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI------------------ 140 (609)
T ss_pred eeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee------------------
Confidence 346788887643332 2233457899999999999999999999999999999887642
Q ss_pred ccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-E-EEEeccCCCCcccCCCCC
Q 015363 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-V-KKVFDWNVHPEKAAGNGP 166 (408)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~-~~~~~~~~~~~~~~~~~~ 166 (408)
....|+. -.+.|..+.-+|. ...|++.+.++.|.+||.+... . ..++..+.. ..
T Consensus 141 ------~V~~~~~---------~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~-------~~ 196 (609)
T KOG4227|consen 141 ------YVANENN---------NRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG-------KN 196 (609)
T ss_pred ------eeecccC---------cccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCC-------cc
Confidence 2222321 0157999999887 4589999999999999998654 1 111111110 01
Q ss_pred eEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC
Q 015363 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (408)
Q Consensus 167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (408)
.+ .+.|+|....| +++.+..+-+.+|| .+.............-++.....-.++.|+|.|+
T Consensus 197 F~-------t~~F~P~~P~L-----------i~~~~~~~G~~~~D-~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 197 FY-------TAEFHPETPAL-----------ILVNSETGGPNVFD-RRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred ce-------eeeecCCCcee-----------EEeccccCCCCcee-eccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence 12 46677766544 57788888899999 4432221111100000122122335778999999
Q ss_pred EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (408)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (408)
.|.+- ....-.+||+-.....+-..+..+..+ .....+.+++|.-+ +.+++|+.+-.|++|.+....... -.+-
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY-~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~--G~~~ 332 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY-CNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSY--GFTQ 332 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEeccCCCCcc-eeeeeeeeeeeecc--eeeeccCcccceEEEecCCCcccc--Cccc
Confidence 88876 555566788873232222111111000 01234567888766 469999999999999886432110 0111
Q ss_pred ccccC---------CCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEEC
Q 015363 326 EEQEA---------PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDI 369 (408)
Q Consensus 326 ~~~~~---------~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~ 369 (408)
.+|.. .....++.+|.+-++.+.|+|...+|++.+ .+.++||.-
T Consensus 333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 12210 112344678889999999999988888776 699999954
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=4.8e-14 Score=121.34 Aligned_cols=92 Identities=10% Similarity=0.193 Sum_probs=75.5
Q ss_pred cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
..|+.++|+|||++||+. .||.++|||..+ ...+-+ +...-+...|++|+||| +++++|+.|..|.||.+
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~-------mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGV-------MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHH-------HHhhccceEEEEEcCCc-cEEEecCCcceEEEEEe
Confidence 579999999999999998 999999999983 333322 34456778999999999 99999999999999999
Q ss_pred CCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
...+.+ .--+ +|.++|..|+|.
T Consensus 362 ~erRVV----ARGq------------GHkSWVs~VaFD 383 (636)
T KOG2394|consen 362 EERRVV----ARGQ------------GHKSWVSVVAFD 383 (636)
T ss_pred ccceEE----Eecc------------ccccceeeEeec
Confidence 987655 2333 446899999998
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.60 E-value=1e-12 Score=116.30 Aligned_cols=236 Identities=14% Similarity=0.219 Sum_probs=147.3
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCC-CCcccccccccccccCCCccceeeeeccCCcccccc--
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDN-GGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL-- 106 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~-- 106 (408)
...+|.+.|+|++|+.||+++|+|+.|..|.||+.+-.... -+....++ -+.+.|-...+.+..-. +|...
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ----CMsFNP~~h~LasCsLs--dFglWS~ 121 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ----CMSFNPITHQLASCSLS--DFGLWSP 121 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee----EeecCchHHHhhhcchh--hccccCh
Confidence 34689999999999999999999999999999985432210 00000000 12233322211111000 00000
Q ss_pred -----cccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEcc
Q 015363 107 -----KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (408)
Q Consensus 107 -----~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (408)
.......+|.+.+| +.||++|+.|-.||+|.+-+-...+ ...+..+..+ +.+++ +++|+|
T Consensus 122 ~qK~V~K~kss~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~-----Nspiw-------si~~~p 186 (1081)
T KOG1538|consen 122 EQKSVSKHKSSSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEE-KVKIERPGGS-----NSPIW-------SICWNP 186 (1081)
T ss_pred hhhhHHhhhhheeEEEeee--cCCCcEEEEeccCceEEeecCCCCc-ceEEeCCCCC-----CCCce-------EEEecC
Confidence 00123367888889 5679999999999999998654333 3333333322 55677 788888
Q ss_pred CCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEe
Q 015363 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (408)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd 260 (408)
.... ...+.+.......++..|. +.+. ..++. ..-.....|+.+.++|.++..| .|+.+++|-
T Consensus 187 ~sg~-------G~~di~aV~DW~qTLSFy~-LsG~---~Igk~-----r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 187 SSGE-------GRNDILAVADWGQTLSFYQ-LSGK---QIGKD-----RALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred CCCC-------CccceEEEEeccceeEEEE-ecce---eeccc-----ccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 6531 1122234455555666555 3221 11111 1122445688999999999998 999999997
Q ss_pred CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
-+ +- .+- +......+|+.++..|++ +.++.|+.||+|..|++
T Consensus 251 R~-Gv-rLG-------Tvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 251 RD-GV-RLG-------TVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ec-Ce-EEe-------eccccceeEEEEEEccCC-ceEEEEEccCeeehhhh
Confidence 65 22 221 244467899999999999 99999999999999975
No 210
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=8e-13 Score=119.73 Aligned_cols=237 Identities=10% Similarity=0.075 Sum_probs=146.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEE--EeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK--VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
..|.++.|+|... .+++.|..+|.|.+||++.+.... ....... .....+. .+.|..+...
T Consensus 243 s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~----sh~~~v~-------~vvW~~~~~~----- 305 (555)
T KOG1587|consen 243 SEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV----SHSEPVT-------AVVWLQNEHN----- 305 (555)
T ss_pred CceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCcccccccc----cCCcCeE-------EEEEeccCCC-----
Confidence 6699999998643 588899999999999999776522 1111111 1122232 4566543332
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeec-----cccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCC
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-----HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEI 263 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~ 263 (408)
.-+++++.||.|..|+ +..........+..... ......+++++|.+.. ..|+.| ++|.|.--+...
T Consensus 306 -----~~f~s~ssDG~i~~W~-~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 306 -----TEFFSLSSDGSICSWD-TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred -----CceEEEecCCcEeeee-ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 1138888899999998 54422211111111110 1223458889998865 567778 899887633331
Q ss_pred CCcee-eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc
Q 015363 264 SNQSF-NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (408)
Q Consensus 264 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (408)
..... ..++. ...+..|.+.|+++.++|-++..|++++ |-+++||...... .|+..+..+ ..
T Consensus 380 ~~~~~~~~~~~-~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~------------~~ 442 (555)
T KOG1587|consen 380 YTPAPEVSYKG-HSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA---SPLLSLDSS------------PD 442 (555)
T ss_pred Ccccccccccc-cccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC---Ccchhhhhc------------cc
Confidence 22111 11110 0136678999999999999977777776 9999999877321 333455444 35
Q ss_pred eeEEEEEccCCC-EEEEeC-CCeEEEEECCCC-CCceeeeeecccccceE
Q 015363 343 SISDIKFARNGR-HILSRD-YMTLKLWDINMD-SGPVATFQVHEHLRPKV 389 (408)
Q Consensus 343 ~i~~~~~spdg~-~l~s~~-d~~v~~wd~~~~-~~~~~~~~~~~~~~~~~ 389 (408)
.|.+++|||--. .+++++ ||.|.+||+... ..++.+...+......+
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~ 492 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV 492 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence 699999999654 555665 699999999753 34555555543333333
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=6.1e-13 Score=120.74 Aligned_cols=208 Identities=14% Similarity=0.140 Sum_probs=127.2
Q ss_pred cceeEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+.+.+|+|+ |+.|+..+.+ ..|.+||+.+++.......... .. ...|+|||+.+
T Consensus 196 ~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~---------~~-------~~~~SPDG~~l--- 254 (427)
T PRK02889 196 EPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS---------NS-------APAWSPDGRTL--- 254 (427)
T ss_pred CCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC---------cc-------ceEECCCCCEE---
Confidence 56889999765 8888877632 4699999998876554333211 11 57899999876
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCce
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 267 (408)
+++.+.++...+|. +..... ..+.+ ..+........|+|||+.|+.. .++...+|.+......
T Consensus 255 --------a~~~~~~g~~~Iy~-~d~~~~-----~~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 255 --------AVALSRDGNSQIYT-VNADGS-----GLRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred --------EEEEccCCCceEEE-EECCCC-----CcEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 24556677777766 322111 11222 3344445678899999988754 4566677765422222
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
...+ ... .......+|+|+| ++++..+.++ .|.+||+.++... .+... ...
T Consensus 320 ~~~l-----t~~--g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~-----~lt~~-------------~~~ 373 (427)
T PRK02889 320 AQRV-----TFT--GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVT-----ALTDT-------------TRD 373 (427)
T ss_pred eEEE-----ecC--CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeE-----EccCC-------------CCc
Confidence 2211 112 2233467999999 7887766554 6999999887542 22211 123
Q ss_pred EEEEEccCCCEEEEeC-C-Ce--EEEEECCCCCCceeeeeeccc
Q 015363 345 SDIKFARNGRHILSRD-Y-MT--LKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 345 ~~~~~spdg~~l~s~~-d-~~--v~~wd~~~~~~~~~~~~~~~~ 384 (408)
....|+|||++|+.+. + +. +.+.++ .+...+.+..+.+
T Consensus 374 ~~p~~spdg~~l~~~~~~~g~~~l~~~~~--~g~~~~~l~~~~g 415 (427)
T PRK02889 374 ESPSFAPNGRYILYATQQGGRSVLAAVSS--DGRIKQRLSVQGG 415 (427)
T ss_pred cCceECCCCCEEEEEEecCCCEEEEEEEC--CCCceEEeecCCC
Confidence 5679999999988763 3 43 444455 4566666655544
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=1.1e-14 Score=123.08 Aligned_cols=262 Identities=11% Similarity=0.143 Sum_probs=178.2
Q ss_pred CCCcccccCcccceeeecc-cCcCcc-------cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccc
Q 015363 5 GGSSEAAAQPLEWKFSQVF-GERTAG-------EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRD 76 (408)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~-~~~~~~-------~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~ 76 (408)
.|.=++...+.-|++.|.- .+.... ...-..-.-..+.++.+|++|+.|+.-|.|-.+|+.++...
T Consensus 91 ~G~le~e~~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~------ 164 (545)
T KOG1272|consen 91 AGYLEAEGLEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH------ 164 (545)
T ss_pred CCcccccCCcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee------
Confidence 3444555566777777631 110000 00011223467889999999999999999999999887631
Q ss_pred cccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCC
Q 015363 77 LEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV 156 (408)
Q Consensus 77 ~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 156 (408)
..+.- ...|.++.|.-+ .++| +......+.|||-...++.++.....
T Consensus 165 -----------------~Ei~v-------------~Etv~Dv~~LHn--eq~~-AVAQK~y~yvYD~~GtElHClk~~~~ 211 (545)
T KOG1272|consen 165 -----------------FEINV-------------METVRDVTFLHN--EQFF-AVAQKKYVYVYDNNGTELHCLKRHIR 211 (545)
T ss_pred -----------------eeeeh-------------hhhhhhhhhhcc--hHHH-HhhhhceEEEecCCCcEEeehhhcCc
Confidence 22222 256999999743 4344 55667789999977665444333221
Q ss_pred CCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccce
Q 015363 157 HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI 236 (408)
Q Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 236 (408)
+. .+.|.|..-.| ++++..|.++.-| +...+ .+..+ ....+.+
T Consensus 212 ----------v~-------rLeFLPyHfLL------------~~~~~~G~L~Y~D-VS~Gk------lVa~~-~t~~G~~ 254 (545)
T KOG1272|consen 212 ----------VA-------RLEFLPYHFLL------------VAASEAGFLKYQD-VSTGK------LVASI-RTGAGRT 254 (545)
T ss_pred ----------hh-------hhcccchhhee------------eecccCCceEEEe-echhh------hhHHH-HccCCcc
Confidence 11 56777777666 8899999999888 54322 22222 3344677
Q ss_pred EEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 237 ~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
..++-+|-+..+-+| ..|+|.+|.-.......+ +-.|.++|.++++.++| +++|+.+.|..++|||+++.
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcceEEECCCC-cEEeecccccceeEeeeccc
Confidence 788889988888899 999999999985555544 56799999999999999 99999999999999999987
Q ss_pred ceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (408)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~ 369 (408)
..+ .++... -....++||..| +||.+-...|.+|.=
T Consensus 326 ~ql----~t~~tp-------------~~a~~ls~Sqkg-lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 326 YQL----HTYRTP-------------HPASNLSLSQKG-LLALSYGDHVQIWKD 361 (545)
T ss_pred ccc----ceeecC-------------CCcccccccccc-ceeeecCCeeeeehh
Confidence 532 222221 246778888654 455553348999953
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.5e-12 Score=118.08 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=127.1
Q ss_pred cceeEEEEeecCCCcEEEEEe---CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLST---NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+.+.+|+|+ |+.|+..+ .+..|.+|++.+++...+....... . ...|+|||+.+
T Consensus 199 ~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~---------~-------~~~~SPDG~~L--- 257 (429)
T PRK03629 199 QPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN---------G-------APAFSPDGSKL--- 257 (429)
T ss_pred CceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc---------C-------CeEECCCCCEE---
Confidence 56889999765 88888764 3457999999988765544332211 1 47899999987
Q ss_pred cccccCccccCCCCC--ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEE--eCCC
Q 015363 190 FGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLW--NLEI 263 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iw--d~~~ 263 (408)
+++...+ ..|.+|| +.... . +.+ ..+...+....|+|||+.|+.. .++...+| |+..
T Consensus 258 --------a~~~~~~g~~~I~~~d-~~tg~------~-~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 258 --------AFALSKTGSLNLYVMD-LASGQ------I-RQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred --------EEEEcCCCCcEEEEEE-CCCCC------E-EEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 2332333 3577777 43211 1 111 2333456788999999988765 34444555 5552
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
+.... +...........|+|+| +.++..+.+ ..|.+||+.++.. ..+...
T Consensus 321 -g~~~~--------lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~~------------ 373 (429)
T PRK03629 321 -GAPQR--------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTDT------------ 373 (429)
T ss_pred -CCeEE--------eecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCCC------------
Confidence 22222 12223345678999999 777665543 3688899987753 222211
Q ss_pred cceeEEEEEccCCCEEEEeC-C---CeEEEEECCCCCCceeeeeecccc
Q 015363 341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL 385 (408)
Q Consensus 341 ~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~~~~~~~~~~~~~~~ 385 (408)
.......|+|||++|+.++ + ..+.+++++ |...+.+.+|.+.
T Consensus 374 -~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~ 419 (429)
T PRK03629 374 -FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQ 419 (429)
T ss_pred -CCCCCceECCCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCC
Confidence 1124578999999998763 4 246777874 5777777776654
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=7.6e-13 Score=115.04 Aligned_cols=265 Identities=16% Similarity=0.219 Sum_probs=166.4
Q ss_pred ceeeccceEEEEECCCCCe-EEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~-l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.+.|...-+.|..+|||+| +|||.+--.|++||+..... .|..|...
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------------------------KFERhlDa------- 94 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------------------------KFERHLDA------- 94 (703)
T ss_pred hcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-------------------------eeeecccc-------
Confidence 4568888899999999996 57888999999999886543 34444421
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..|.-.-. +.|-+..+.-..|++|.+...-.......+.-... .++++.-.--|
T Consensus 95 ---e~V~feiL--sDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GR------------------Dm~y~~~scDl--- 148 (703)
T KOG2321|consen 95 ---EVVDFEIL--SDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGR------------------DMKYHKPSCDL--- 148 (703)
T ss_pred ---cceeEEEe--ccchhhheEeecCceeeehhhcCeeeeeecCcCCc------------------cccccCCCccE---
Confidence 22333333 22334455556777777654332221111111000 12222111111
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
+.++....|.-++ +.. +..+..+ ....+.++++..++-..+|++| .+|.|.+||.+. +...
T Consensus 149 ---------y~~gsg~evYRlN-LEq------GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv 210 (703)
T KOG2321|consen 149 ---------YLVGSGSEVYRLN-LEQ------GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRV 210 (703)
T ss_pred ---------EEeecCcceEEEE-ccc------ccccccc-ccccccceeeeecCccceEEecccCceEEEecchh-hhhh
Confidence 3333344444333 211 2222332 4445789999999999999999 899999999994 4333
Q ss_pred eEeecCCCcccCCcC-----CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 269 NIVDVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
..++... ....|.+ .|+++.|+.+| -.+++|+.+|.+.|||+++.+.+ ....|.. ..+
T Consensus 211 ~~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl-----~~kdh~~----------e~p 273 (703)
T KOG2321|consen 211 GTLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPL-----LVKDHGY----------ELP 273 (703)
T ss_pred eeeeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCce-----eecccCC----------ccc
Confidence 3333211 1233333 49999999999 99999999999999999998653 2233321 257
Q ss_pred eEEEEEccC--CCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEE
Q 015363 344 ISDIKFARN--GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVM 390 (408)
Q Consensus 344 i~~~~~spd--g~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 390 (408)
|..+.|-+. ...|++.+...++|||-.+ |++...+..-.. .+.+|
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~-lND~C 320 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTSD-LNDFC 320 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhccccc-CCceeeccccCC-cCcee
Confidence 999999775 5678888779999999998 788887776555 33344
No 215
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.8e-12 Score=99.84 Aligned_cols=214 Identities=17% Similarity=0.268 Sum_probs=135.6
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.+.+|.++|+.++|. ..+|++|+ ||.|+=|..........+++..+ ....++....
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe-------------~~~P~~~~~~-------- 112 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWE-------------VKIPMQVDAV-------- 112 (325)
T ss_pred eccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhh-------------hcCccccCcc--------
Confidence 346799999999998 45677776 49999999876543212222111 1111111000
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
+ -..|+++-.-|..+ -++.++.|+.++-||+++++..+.
T Consensus 113 e-vPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~-------------------------------------- 151 (325)
T KOG0649|consen 113 E-VPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQRE-------------------------------------- 151 (325)
T ss_pred c-CCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEE--------------------------------------
Confidence 0 03388888877654 455666899999999999986654
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
+.+|.+.|.++.-......+++| .||++++||+++ .+..
T Consensus 152 ---------------------------------------~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v 191 (325)
T KOG0649|consen 152 ---------------------------------------YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHV 191 (325)
T ss_pred ---------------------------------------EcCCcceeeeeeecccCcceeecCCCccEEEEeccc-ccee
Confidence 25666778888774445566677 999999999995 4444
Q ss_pred eEeec-C-CCcccCC-cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363 269 NIVDV-K-PANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (408)
Q Consensus 269 ~~~~~-~-~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (408)
+++.. + +..+..| ..+|.+++.+. .+|++|+ ...+.+|.+++.... .++.-. ..+.
T Consensus 192 ~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t----~vfpip-------------a~v~ 250 (325)
T KOG0649|consen 192 SMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSEST----CVFPIP-------------ARVH 250 (325)
T ss_pred EEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCce----EEEecc-------------ccee
Confidence 44332 1 1112222 34577777654 4677664 567999999987543 444433 4588
Q ss_pred EEEEccCCCEEEEeCCCeEEEEECC
Q 015363 346 DIKFARNGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 346 ~~~~spdg~~l~s~~d~~v~~wd~~ 370 (408)
.+.|..| ..|+.|..+.|.-|.+.
T Consensus 251 ~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 251 LVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred Eeeeecc-eEEEeccccceeeeeec
Confidence 8888643 34444445789999885
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.8e-13 Score=108.65 Aligned_cols=214 Identities=13% Similarity=0.205 Sum_probs=140.2
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
+..+.-++|++.-.-+|++..|-.|++|+-+.... ..++... +..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrn 142 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRN 142 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcc
Confidence 34577899999766789999999999999665321 1222221 155
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
|+|++|-|... +.|+.|+.. -|.+|.......... .
T Consensus 143 vtclawRPlsa-selavgCr~-gIciW~~s~tln~~r---------------~--------------------------- 178 (445)
T KOG2139|consen 143 VTCLAWRPLSA-SELAVGCRA-GICIWSDSRTLNANR---------------N--------------------------- 178 (445)
T ss_pred eeEEEeccCCc-ceeeeeecc-eeEEEEcCccccccc---------------c---------------------------
Confidence 99999987644 466666655 488998763321100 0
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEee
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~ 272 (408)
..+...+...+.. ..+| ..|+++.|++||..++++ .|..|.|||..++. ...+.
T Consensus 179 ----~~~~s~~~~qvl~-----------------~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~- 234 (445)
T KOG2139|consen 179 ----IRMMSTHHLQVLQ-----------------DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLI- 234 (445)
T ss_pred ----cccccccchhhee-----------------CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-ccccc-
Confidence 0000111111100 2455 679999999999999997 79999999999543 33221
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
.-..+.++-+.|+||+ .+|.+++-|+..++|+........ +-..+ ++.|...+|+|+
T Consensus 235 ------~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~e---rw~lg-------------sgrvqtacWspc 291 (445)
T KOG2139|consen 235 ------PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKE---RWILG-------------SGRVQTACWSPC 291 (445)
T ss_pred ------ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceec---ceecc-------------CCceeeeeecCC
Confidence 1234567889999999 888888999999999654432221 11111 257999999999
Q ss_pred CCEEEEeCCCeEEEEECCCCCC
Q 015363 353 GRHILSRDYMTLKLWDINMDSG 374 (408)
Q Consensus 353 g~~l~s~~d~~v~~wd~~~~~~ 374 (408)
|++|+-+..+.-++|.+...++
T Consensus 292 GsfLLf~~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 292 GSFLLFACSGSPRLYSLTFDGE 313 (445)
T ss_pred CCEEEEEEcCCceEEEEeecCC
Confidence 9998877655666676655433
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.5e-13 Score=115.03 Aligned_cols=200 Identities=12% Similarity=0.113 Sum_probs=134.2
Q ss_pred eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (408)
.+++|+ .+|..+++++.||++|+|+..+.........+ .+.|. .+.|+|||+.+
T Consensus 148 k~vaf~--~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~--------~~eV~-------DL~FS~dgk~l--------- 201 (398)
T KOG0771|consen 148 KVVAFN--GDGSKLATGGTDGTLRVWEWPSMLTILEEIAH--------HAEVK-------DLDFSPDGKFL--------- 201 (398)
T ss_pred eEEEEc--CCCCEeeeccccceEEEEecCcchhhhhhHhh--------cCccc-------cceeCCCCcEE---------
Confidence 678885 55899999999999999996654333222222 22343 79999999998
Q ss_pred ccccCCCCCceeeeceeeeccccccccccceeec-cccccceEEEEeCCCC---CEE-EE-e-cCCeEEEEeCCCCCcee
Q 015363 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDG---ETF-IS-A-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~---~~l-~~-~-~d~~i~iwd~~~~~~~~ 268 (408)
++-+.+ ..++|+ +.... +..... ...+..+..+.|+.++ .++ ++ . .-+.|+.||+......
T Consensus 202 ---asig~d-~~~VW~-~~~g~------~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~- 269 (398)
T KOG0771|consen 202 ---ASIGAD-SARVWS-VNTGA------ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS- 269 (398)
T ss_pred ---EEecCC-ceEEEE-eccCc------hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-
Confidence 888888 999999 44321 111111 1222345566777665 322 22 2 5677788777643332
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
..... .........|++++.+++| +++|.|+.||.|.|++..+.+... ..- ..|...|+.+.
T Consensus 270 ~~l~~--~~~~~~~~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~---~vk------------~aH~~~VT~lt 331 (398)
T KOG0771|consen 270 NFLRL--RKKIKRFKSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQ---YVK------------EAHLGFVTGLT 331 (398)
T ss_pred cccch--hhhhhccCcceeEEEcCCC-cEEEEeccCCcEEEEEeceeeeeE---eeh------------hhheeeeeeEE
Confidence 11111 1122234568999999999 999999999999999998775431 222 33568999999
Q ss_pred EccCCCEEEEe-CCCeEEEEECCC
Q 015363 349 FARNGRHILSR-DYMTLKLWDINM 371 (408)
Q Consensus 349 ~spdg~~l~s~-~d~~v~~wd~~~ 371 (408)
|+||.+++++- ++.+..+..+.-
T Consensus 332 F~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 332 FSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCcCcccccccCCceeEEEEee
Confidence 99999999986 467888877764
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=5.6e-13 Score=125.50 Aligned_cols=239 Identities=16% Similarity=0.220 Sum_probs=151.7
Q ss_pred CCCccceeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-EEeccCCCCcccCCC
Q 015363 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGN 164 (408)
Q Consensus 86 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~ 164 (408)
++|.+..++.+..|. ..|..++.++ +.+.+|++|+.||+|++|+++.-... .+...
T Consensus 1034 W~p~G~lVAhL~Ehs------------~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS---------- 1090 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS------------SAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS---------- 1090 (1431)
T ss_pred CCccceEeehhhhcc------------ccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeee----------
Confidence 356666777777777 7788888874 44579999999999999998743211 11000
Q ss_pred CCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccc-cccccceee-ccccccceEEEEeC
Q 015363 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-LVAGCRRIY-AHAHDYHINSISNN 242 (408)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~v~~i~~~ 242 (408)
.+.+++.+.....+....+.+.++.++.||.|++.+ +...+.. ....+.+.. ......-|..-++.
T Consensus 1091 -----------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~-id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~ 1158 (1431)
T KOG1240|consen 1091 -----------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR-IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT 1158 (1431)
T ss_pred -----------eEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE-ccccccccceeeeeecccccCCCceEEeeccc
Confidence 344555555554555555555558889999999987 5442111 111122211 11222223333443
Q ss_pred CC-CC-EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec
Q 015363 243 SD-GE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319 (408)
Q Consensus 243 ~~-~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 319 (408)
.. +. .++.+ ..+.|..||++........ ......+.|++++.+|.+ ++++.|+..|.+.+||+|-+..+
T Consensus 1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i- 1230 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI- 1230 (1431)
T ss_pred ccccceeEEEEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee-
Confidence 32 33 56666 8899999999954443322 133446779999999999 89999999999999999977543
Q ss_pred ccccccccccCCCCccccccccceeEEEEEcc---CCCEEEEe-C-C-CeEEEEECCCCCCceeeeeec
Q 015363 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSR-D-Y-MTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---dg~~l~s~-~-d-~~v~~wd~~~~~~~~~~~~~~ 382 (408)
..+..+. ..+|..+..+| .....+++ + . +.|.+|++.+ |.+-.++-..
T Consensus 1231 ---~sw~~P~-----------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1231 ---LSWEHPA-----------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWAS 1284 (1431)
T ss_pred ---ecccCcc-----------cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcC
Confidence 3333221 25677777766 33455554 3 3 8999999998 5665555443
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=5.6e-11 Score=98.18 Aligned_cols=160 Identities=13% Similarity=0.190 Sum_probs=110.4
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..|.+|++. .++|+++-.+. |.|||+++-+.+..+....... . .+. ++..++.+.++
T Consensus 88 t~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~----~-gl~-------AlS~n~~n~yl------ 144 (391)
T KOG2110|consen 88 TSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNP----K-GLC-------ALSPNNANCYL------ 144 (391)
T ss_pred CceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCc----c-ceE-------eeccCCCCceE------
Confidence 459999984 34777776655 9999999988776655432110 0 111 23333333344
Q ss_pred ccCccccC-CCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCe-EEEEeCCCCCceee
Q 015363 193 ASNDSSFP-PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR-INLWNLEISNQSFN 269 (408)
Q Consensus 193 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~-i~iwd~~~~~~~~~ 269 (408)
.+- ....|.|.+|| +.+ -++... +.+|.+.+.+++|+++|.+||++ +.|+ ||||.+..+.+..+
T Consensus 145 -----Ayp~s~t~GdV~l~d-~~n------l~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 145 -----AYPGSTTSGDVVLFD-TIN------LQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred -----EecCCCCCceEEEEE-ccc------ceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 122 33468999999 433 222333 37999999999999999999999 6665 69999986665555
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
.- . ......|.+++|+|++ ++|++.+..++|.++.+...
T Consensus 212 FR---R---G~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 FR---R---GTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ee---C---CceeeEEEEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence 31 1 1124568899999999 99999999999999988754
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.5e-12 Score=118.56 Aligned_cols=203 Identities=12% Similarity=0.053 Sum_probs=123.5
Q ss_pred cceeEEEEeecCCCcEEEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+.+.+|+|+ |+.|+..+. +..|.+||+.+++...+...... . ....|+|+|+.+
T Consensus 204 ~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~---------~-------~~~~~SpDG~~l--- 262 (433)
T PRK04922 204 EPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI---------N-------GAPSFSPDGRRL--- 262 (433)
T ss_pred CccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC---------c-------cCceECCCCCEE---
Confidence 56889999765 878888763 34799999998876554332211 1 146899999876
Q ss_pred cccccCccccCCCCC--ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCe--EEEEeCCC
Q 015363 190 FGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR--INLWNLEI 263 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~--i~iwd~~~ 263 (408)
+++.+.+ ..|.+|+ +..... +. +..+.......+|+|||+.|+.. .++. |.++|+..
T Consensus 263 --------~~~~s~~g~~~Iy~~d-~~~g~~-------~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 263 --------ALTLSRDGNPEIYVMD-LGSRQL-------TR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred --------EEEEeCCCCceEEEEE-CCCCCe-------EE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 2333333 4677777 432211 11 13333445678999999988865 3444 66666653
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
+....+ ..+......++|+|+| +.++..+.++ .|.+||+.++... .+...
T Consensus 326 -g~~~~l--------t~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~~------------ 378 (433)
T PRK04922 326 -GSAERL--------TFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTPG------------ 378 (433)
T ss_pred -CCeEEe--------ecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-----ECCCC------------
Confidence 222221 1122334568999999 7777655432 6999999877532 22211
Q ss_pred cceeEEEEEccCCCEEEEeC-C---CeEEEEECCCCCCceeeeeecc
Q 015363 341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 383 (408)
Q Consensus 341 ~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~~~~~~~~~~~~~ 383 (408)
.......|+|||++|+..+ + ..|.+++++ +...+.+..+.
T Consensus 379 -~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~ 422 (433)
T PRK04922 379 -SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD--GRVRQRLVSAD 422 (433)
T ss_pred -CCCCCceECCCCCEEEEEEecCCceEEEEEECC--CCceEEcccCC
Confidence 1234568999999887652 2 457777774 45556555443
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.8e-12 Score=114.50 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=123.1
Q ss_pred cceeEEEEeecCCCcEEEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+.+.+|+|+ |+.|+..+. +..|.+||+.+++...+..... .+. ...|+|||+.+
T Consensus 202 ~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g---------~~~-------~~~~SPDG~~l--- 260 (435)
T PRK05137 202 SLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQRELVGNFPG---------MTF-------APRFSPDGRKV--- 260 (435)
T ss_pred CCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC---------ccc-------CcEECCCCCEE---
Confidence 66999999765 888888753 4689999999887655433221 111 56899999876
Q ss_pred cccccCccccCCCCCce--eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--CeEEEEeCCC
Q 015363 190 FGCASNDSSFPPGGVSS--LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLEI 263 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--~~i~iwd~~~ 263 (408)
+++.+.++. |.+|| +.... .+. +..+........|+|||+.++.. .+ ..|+++|+.
T Consensus 261 --------a~~~~~~g~~~Iy~~d-~~~~~-------~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~- 322 (435)
T PRK05137 261 --------VMSLSQGGNTDIYTMD-LRSGT-------TTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD- 322 (435)
T ss_pred --------EEEEecCCCceEEEEE-CCCCc-------eEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-
Confidence 244444444 55555 32211 112 23344456678999999988765 33 367888877
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
++....+ ..+...+....|+|+| +.|+..+.+ ..|.+||+..+.. +.+...
T Consensus 323 g~~~~~l--------t~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~~------------ 376 (435)
T PRK05137 323 GSNPRRI--------SFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTSG------------ 376 (435)
T ss_pred CCCeEEe--------ecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccCC------------
Confidence 3333322 2223445678999999 777766543 3688888765432 222111
Q ss_pred cceeEEEEEccCCCEEEEe-CC-C-----eEEEEECCCCCCceeeee
Q 015363 341 IASISDIKFARNGRHILSR-DY-M-----TLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 341 ~~~i~~~~~spdg~~l~s~-~d-~-----~v~~wd~~~~~~~~~~~~ 380 (408)
..+..+.|+|||++|+.. .+ + .+.++|++. ...+.+.
T Consensus 377 -~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g--~~~~~l~ 420 (435)
T PRK05137 377 -FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG--RNEREVP 420 (435)
T ss_pred -CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC--CceEEcc
Confidence 135678999999988764 22 2 567777753 3334443
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=2.2e-10 Score=101.10 Aligned_cols=281 Identities=11% Similarity=0.139 Sum_probs=159.3
Q ss_pred eeccceEEEEECCCCCeEEEeec----CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
.-....+-++++|++++|.+... +|.|..|.+..... ..+.+.......
T Consensus 34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g-------- 86 (345)
T PF10282_consen 34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG-------- 86 (345)
T ss_dssp EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS--------
T ss_pred cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC--------
Confidence 34455678899999999988876 57999999876421 111222222111
Q ss_pred cccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCC-CcEEEEeccCCCC-cccCCCCCeEeecCCceeeEEccCCCe
Q 015363 109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHP-EKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
.....+++. +++.+++++. .+|.|.++++.. +............ ....+ .......+..+.++|+|+.
T Consensus 87 ----~~p~~i~~~--~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~---~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 87 ----SSPCHIAVD--PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP---DRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST---TTTSSTCEEEEEE-TTSSE
T ss_pred ----CCcEEEEEe--cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc---cccccccceeEEECCCCCE
Confidence 335667785 5588888876 699999999986 4443322110000 00000 0000112236889999998
Q ss_pred eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCC
Q 015363 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~ 263 (408)
+ +++.-....|.+|+ +......... ...+........+.++|+|+++++.+. .++.|.++++..
T Consensus 158 v-----------~v~dlG~D~v~~~~-~~~~~~~l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 158 V-----------YVPDLGADRVYVYD-IDDDTGKLTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp E-----------EEEETTTTEEEEEE-E-TTS-TEEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred E-----------EEEecCCCEEEEEE-EeCCCceEEE--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 7 23334455788888 5443311111 111112344668899999999988765 689999999983
Q ss_pred CCcee---eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--CceecccccccccccCCCCccccc
Q 015363 264 SNQSF---NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFT 338 (408)
Q Consensus 264 ~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 338 (408)
....+ +.+...+....+ ......|+++|+|..++++....+.|.+|++.. +.+. .+..+...
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~--~~~~~~~~---------- 290 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT--LVQTVPTG---------- 290 (345)
T ss_dssp TTTEEEEEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE--EEEEEEES----------
T ss_pred cCCceeEEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE--EEEEEeCC----------
Confidence 22222 222222111221 225789999999933444445578999999943 3321 11222211
Q ss_pred cccceeEEEEEccCCCEEEEeC--CCeEEEEECCCCCCceee
Q 015363 339 EIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVAT 378 (408)
Q Consensus 339 ~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~~~~~~~~ 378 (408)
......++++|+|++|+++. ++.|.+|+++...-.+..
T Consensus 291 --G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 291 --GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp --SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred --CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 13478999999999999873 489999988643333333
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.9e-12 Score=115.42 Aligned_cols=219 Identities=11% Similarity=0.123 Sum_probs=133.1
Q ss_pred eeccceEEEEECCCCCeEEEeec---CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.+...+.+.+|||||+.||..+. +..|.+|++.+++.. .+..+.++
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---------------------~l~~~~~~---------- 244 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------------QVASFPRH---------- 244 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------------EccCCCCC----------
Confidence 45567999999999998887543 347889998776421 12222222
Q ss_pred ccccceeEEEEeecCCCcEEEEE-eCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 110 EIEEKINKIRWCQSANSALYLLS-TNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
+..++|+|+ |+.|+.. +.++ .|.+||+.+++.......... + ....|+|+|+.+
T Consensus 245 -----~~~~~~SPD--G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~---------~-------~~~~wSPDG~~I 301 (429)
T PRK03629 245 -----NGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN---------N-------TEPTWFPDSQNL 301 (429)
T ss_pred -----cCCeEECCC--CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCC---------c-------CceEECCCCCEE
Confidence 456889755 8778765 4454 588999998876554332211 1 157899999977
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--CeEEEEeCC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLE 262 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--~~i~iwd~~ 262 (408)
+++...++...+|. +..... .. +.+ ..+........|+|||+.++.. .+ ..|.+||+.
T Consensus 302 -----------~f~s~~~g~~~Iy~-~d~~~g----~~-~~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 302 -----------AYTSDQAGRPQVYK-VNINGG----AP-QRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred -----------EEEeCCCCCceEEE-EECCCC----Ce-EEe-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 23444445555554 221111 11 111 2222345578899999998765 33 468889987
Q ss_pred CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe---EEEEEcCCCceecccccccccccCCCCcccccc
Q 015363 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS---IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (408)
++. ...+ .. ........|+||| +.|+.++.++. +.++++..... ..+.++
T Consensus 364 ~g~-~~~L--------t~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~-----~~l~~~----------- 416 (429)
T PRK03629 364 TGG-VQVL--------TD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK-----ARLPAT----------- 416 (429)
T ss_pred CCC-eEEe--------CC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCe-----EECccC-----------
Confidence 443 3221 11 1122467899999 88888777653 67777754322 334444
Q ss_pred ccceeEEEEEcc
Q 015363 340 IIASISDIKFAR 351 (408)
Q Consensus 340 h~~~i~~~~~sp 351 (408)
.+.+...+|+|
T Consensus 417 -~~~~~~p~Wsp 427 (429)
T PRK03629 417 -DGQVKFPAWSP 427 (429)
T ss_pred -CCCcCCcccCC
Confidence 35677888887
No 224
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.49 E-value=1.4e-13 Score=124.53 Aligned_cols=206 Identities=12% Similarity=0.172 Sum_probs=138.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..|.|+.| +..|.++++|+.|..++||.+++..+.....++... +. .++.+.+...
T Consensus 191 naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d--------it-------dlavs~~n~~------- 246 (1113)
T KOG0644|consen 191 NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD--------IT-------DLAVSSNNTM------- 246 (1113)
T ss_pred hheeeeee--ccccceEeecCccceeeeeeccchhhhccCCCCccc--------cc-------hhccchhhhh-------
Confidence 88999999 555999999999999999999999888777776433 21 2333434433
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 272 (408)
+++++.|..|++|. +.. ..++.. +.+|.+.|++++|+|-. .++.||++++||.+ ..... +.
T Consensus 247 -----iaaaS~D~vIrvWr-l~~------~~pvsv-LrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~--y~ 307 (1113)
T KOG0644|consen 247 -----IAAASNDKVIRVWR-LPD------GAPVSV-LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRI--YV 307 (1113)
T ss_pred -----hhhcccCceEEEEe-cCC------CchHHH-HhccccceeeeccCccc---cCCCCCceEecccc-ccccc--cC
Confidence 48999999999999 433 334444 48999999999999965 34499999999998 21111 11
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE-------------------------------------EcCCC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI-------------------------------------DMRQS 315 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw-------------------------------------d~~~~ 315 (408)
-+|..+.+ ..-+.++.|...+ .-+++++.|+.-..| ++-++
T Consensus 308 prp~~~~~-~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 308 PRPLKFTE-KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred CCCCCccc-ccceeeeeccccc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc
Confidence 11111222 2334455555555 555555555544444 33333
Q ss_pred ceecccccccccccCCCCccccccccceeEEEEEccCCCEEE-Ee-CCCeEEEEECCCCCCceeeee
Q 015363 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SR-DYMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~-s~-~d~~v~~wd~~~~~~~~~~~~ 380 (408)
.+ .+...+|...+..+.++|-+..++ ++ -||...|||+.. |.+++.+.
T Consensus 386 ~l----------------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~ 435 (1113)
T KOG0644|consen 386 QL----------------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYF 435 (1113)
T ss_pred hh----------------hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc-CCcceeee
Confidence 22 222456678899999999666555 44 479999999996 78877765
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=7.9e-13 Score=114.03 Aligned_cols=76 Identities=13% Similarity=0.276 Sum_probs=61.2
Q ss_pred cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC-------------------
Q 015363 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT------------------- 293 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------------- 293 (408)
+...|++|+|||+++++| .|..|.||.+. .++.+. .-.+|+.+|..++|+|-
T Consensus 333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-erRVVA-------RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~ 404 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-ERRVVA-------RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSD 404 (636)
T ss_pred cceEEEEEcCCccEEEecCCcceEEEEEec-cceEEE-------eccccccceeeEeecccccccccccccccccccccc
Confidence 678899999999999999 99999999998 444433 25789999999999831
Q ss_pred ------------C----------------CceEEEEeCCCeEEEEEcCCCce
Q 015363 294 ------------H----------------CNMLAYSSSKGSIRLIDMRQSAL 317 (408)
Q Consensus 294 ------------~----------------~~~l~s~~~dg~i~iwd~~~~~~ 317 (408)
+ ...|.+.+.|..+.+||+....+
T Consensus 405 ~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 405 VAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred hhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 0 13678889999999999976543
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=1.1e-10 Score=102.98 Aligned_cols=259 Identities=10% Similarity=0.121 Sum_probs=145.8
Q ss_pred EEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (408)
Q Consensus 39 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (408)
..+.|+|||++++++++||.|.++|+.+.+. +..++.. ....++
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-----------------------v~~i~~G-------------~~~~~i 83 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV-----------------------VATIKVG-------------GNPRGI 83 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------------EEEEE-S-------------SEEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------------EEEEecC-------------CCcceE
Confidence 3477999999999999999999999987763 3333332 336789
Q ss_pred EEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCcc
Q 015363 119 RWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (408)
Q Consensus 119 ~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (408)
+++|+ |++++++. .++.+.++|.++.+.............. ....+. .+..+|.....
T Consensus 84 ~~s~D--G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~-------aIv~s~~~~~f----------- 142 (369)
T PF02239_consen 84 AVSPD--GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG-PESRVA-------AIVASPGRPEF----------- 142 (369)
T ss_dssp EE--T--TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT-S---EE-------EEEE-SSSSEE-----------
T ss_pred EEcCC--CCEEEEEecCCCceeEeccccccceeecccccccccc-cCCCce-------eEEecCCCCEE-----------
Confidence 99654 88888775 7899999999998887766543221100 111121 34445554422
Q ss_pred ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecC-
Q 015363 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVK- 274 (408)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~- 274 (408)
+++.-+.+.|.+-| ...... ..... ..-........|+|++++++.+ .+..|-++|..+.+. ...++..
T Consensus 143 Vv~lkd~~~I~vVd-y~d~~~-----~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~g~ 214 (369)
T PF02239_consen 143 VVNLKDTGEIWVVD-YSDPKN-----LKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDTGK 214 (369)
T ss_dssp EEEETTTTEEEEEE-TTTSSC-----EEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE-SS
T ss_pred EEEEccCCeEEEEE-eccccc-----cceee-ecccccccccccCcccceeeecccccceeEEEeeccceE-EEEeeccc
Confidence 24444445565544 222110 00011 1222456678999999988775 677899999874332 2222110
Q ss_pred -C----------------------------------C------------cccCCcCCeEEEEEcCCCCceEEEE----eC
Q 015363 275 -P----------------------------------A------------NMEDLTEVITSAEFHPTHCNMLAYS----SS 303 (408)
Q Consensus 275 -~----------------------------------~------------~~~~~~~~v~~~~~~p~~~~~l~s~----~~ 303 (408)
+ . ++.....+ .-+..+|++ .++.+. ..
T Consensus 215 ~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~ 292 (369)
T PF02239_consen 215 KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPD 292 (369)
T ss_dssp SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SS
T ss_pred cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCC
Confidence 0 0 00111122 446678999 666665 44
Q ss_pred CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--CC-CeEEEEECCCCCCceeeee
Q 015363 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY-MTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d-~~v~~wd~~~~~~~~~~~~ 380 (408)
.++|.++|.++.+.+ ..+.... ...+..+.|++||+++..+ .. +.|.+||..+ .+.++.++
T Consensus 293 ~~~v~viD~~tl~~~----~~i~~~~-----------~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T-l~~~~~i~ 356 (369)
T PF02239_consen 293 ADTVQVIDKKTLKVV----KTITPGP-----------GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT-LKEKKRIP 356 (369)
T ss_dssp HT-EEEEECCGTEEE----E-HHHHH-----------T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT-TEEEEEEE
T ss_pred CceEEEEECcCccee----EEEeccC-----------CCcEeccEECCCCCEEEEEEecCCCEEEEEECCC-cEEEEEEE
Confidence 689999999988554 3333221 1248899999999987765 33 5999999998 68888776
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.2e-11 Score=112.79 Aligned_cols=200 Identities=9% Similarity=0.092 Sum_probs=123.0
Q ss_pred eeeccceEEEEECCCCCeEEEeec---CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
..|...+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+..+.
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~------------------------~~l~~~~-------- 245 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR------------------------ELVGNFP-------- 245 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE------------------------EEeecCC--------
Confidence 356778999999999999888764 46899999877642 1223333
Q ss_pred cccccceeEEEEeecCCCcEEE-EEeCCCe--EEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363 109 LEIEEKINKIRWCQSANSALYL-LSTNDKT--IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~-~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
..+...+|+|+ |+.|+ +.+.++. |.+||+.+++......... ... ...|+|||+.
T Consensus 246 ----g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~---------~~~-------~~~~spDG~~ 303 (435)
T PRK05137 246 ----GMTFAPRFSPD--GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA---------IDT-------SPSYSPDGSQ 303 (435)
T ss_pred ----CcccCcEECCC--CCEEEEEEecCCCceEEEEECCCCceEEccCCCC---------ccC-------ceeEcCCCCE
Confidence 44678899755 77765 4455554 7777888877654432211 111 4689999998
Q ss_pred eecccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c-C--CeEEEE
Q 015363 186 GERNFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-D--LRINLW 259 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d--~~i~iw 259 (408)
+ +++...++ .|.+++ +.... .+.+ ..+...+....|+|+|+.++.. . . ..|.+|
T Consensus 304 i-----------~f~s~~~g~~~Iy~~d-~~g~~-------~~~l-t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 304 I-----------VFESDRSGSPQLYVMN-ADGSN-------PRRI-SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred E-----------EEEECCCCCCeEEEEE-CCCCC-------eEEe-ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 7 23333333 455555 32211 1111 2223445678899999998875 2 2 468888
Q ss_pred eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC------CeEEEEEcCCCc
Q 015363 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSA 316 (408)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~ 316 (408)
|+.. +.. .. +.. ...+..+.|+|+| +.|+..+.+ ..+.++|+..+.
T Consensus 364 d~~~-~~~-~~-------lt~-~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 364 KPDG-SGE-RI-------LTS-GFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ECCC-Cce-Ee-------ccC-CCCCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCc
Confidence 8763 322 21 111 1235678999999 666655442 357788886653
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=5e-13 Score=113.18 Aligned_cols=200 Identities=11% Similarity=0.118 Sum_probs=149.8
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
-..+.+ +.+|..++.+++.|.|..+|..++++...+..... |. .+.|..+.++
T Consensus 132 PY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et---------v~-------Dv~~LHneq~--------- 184 (545)
T KOG1272|consen 132 PYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET---------VR-------DVTFLHNEQF--------- 184 (545)
T ss_pred Ceeeee--cCCccEEEecCCccceeeeecccceeeeeeehhhh---------hh-------hhhhhcchHH---------
Confidence 456677 46699999999999999999999987766554322 11 3555555554
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (408)
++......+.+|| - .+ ..-.|++.. ..|..+.|-|-.-+|+++ ..|.++.-|+.+++..-.
T Consensus 185 ----~AVAQK~y~yvYD-~---~G-tElHClk~~-----~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~---- 246 (545)
T KOG1272|consen 185 ----FAVAQKKYVYVYD-N---NG-TELHCLKRH-----IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS---- 246 (545)
T ss_pred ----HHhhhhceEEEec-C---CC-cEEeehhhc-----CchhhhcccchhheeeecccCCceEEEeechhhhhHH----
Confidence 5667778888888 2 11 112343333 678899999999888888 899999999996554432
Q ss_pred CCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC
Q 015363 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (408)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg 353 (408)
+....+.+..|+-+|-+ -++-+|...|+|.+|...+...+ ..+..| .++|.++++.++|
T Consensus 247 ----~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePL----vKiLcH------------~g~V~siAv~~~G 305 (545)
T KOG1272|consen 247 ----IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPL----VKILCH------------RGPVSSIAVDRGG 305 (545)
T ss_pred ----HHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchH----HHHHhc------------CCCcceEEECCCC
Confidence 34456778889999999 89999999999999998876443 455555 4889999999999
Q ss_pred CEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363 354 RHILSRD-YMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 354 ~~l~s~~-d~~v~~wd~~~~~~~~~~~~~ 381 (408)
+|+||++ |..++|||+++. ..+.++..
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~-~ql~t~~t 333 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNF-YQLHTYRT 333 (545)
T ss_pred cEEeecccccceeEeeeccc-cccceeec
Confidence 9999975 899999999984 44444443
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.45 E-value=9.7e-13 Score=106.82 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=138.6
Q ss_pred EEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEE
Q 015363 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (408)
Q Consensus 40 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~ 119 (408)
-.+|||+|+++|++++- ++.|-|..+.+. .+.|.. - ++|.-+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-----------------------~qlf~c-l------------dki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-----------------------HQLFLC-L------------DKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH-----------------------HHHHHH-H------------HHhhhee
Confidence 45799999999999877 787888765542 111111 1 5588899
Q ss_pred EeecCCCcEEEE-EeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363 120 WCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (408)
Q Consensus 120 ~~p~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (408)
|. .+..+++. ...|+.|.+|++...+....+...... +. .+.|+|+|+.+ +
T Consensus 56 W~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag--------ls-------~~~WSPdgrhi-----------L 107 (447)
T KOG4497|consen 56 WK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG--------LS-------SISWSPDGRHI-----------L 107 (447)
T ss_pred ee--ccceeeeeeeeccceEEEEEeecceeEEEeccCCCc--------ce-------eeeECCCcceE-----------e
Confidence 96 33444444 468899999999988766554433211 22 58999999876 4
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCC
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 276 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (408)
.+...+-.|.+|. +........ .-....+..++|+|||++.+.. .|.. ..+++. ..+...+. .
T Consensus 108 ~tseF~lriTVWS-L~t~~~~~~--------~~pK~~~kg~~f~~dg~f~ai~sRrDCk-dyv~i~-~c~~W~ll----~ 172 (447)
T KOG4497|consen 108 LTSEFDLRITVWS-LNTQKGYLL--------PHPKTNVKGYAFHPDGQFCAILSRRDCK-DYVQIS-SCKAWILL----K 172 (447)
T ss_pred eeecceeEEEEEE-eccceeEEe--------cccccCceeEEECCCCceeeeeecccHH-HHHHHH-hhHHHHHH----H
Confidence 6778889999999 544322111 2223456889999999998876 3321 111111 01110000 0
Q ss_pred cccCCcCCeEEEEEcCCCCceEEEEeC--CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363 277 NMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (408)
Q Consensus 277 ~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~ 354 (408)
.+.-..-..+.+.|+||| ..||+=.+ +-.|..|... -.+..+.|+|.++
T Consensus 173 ~f~~dT~DltgieWsPdg-~~laVwd~~Leykv~aYe~~----------------------------lG~k~v~wsP~~q 223 (447)
T KOG4497|consen 173 EFKLDTIDLTGIEWSPDG-NWLAVWDNVLEYKVYAYERG----------------------------LGLKFVEWSPCNQ 223 (447)
T ss_pred hcCCCcccccCceECCCC-cEEEEecchhhheeeeeeec----------------------------cceeEEEeccccc
Confidence 122233446789999999 77765322 1222222211 3578899999999
Q ss_pred EEEEeC-CCeEEEEECC
Q 015363 355 HILSRD-YMTLKLWDIN 370 (408)
Q Consensus 355 ~l~s~~-d~~v~~wd~~ 370 (408)
+|+.|+ |+.+++-+--
T Consensus 224 flavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHF 240 (447)
T ss_pred eEEeeccchhhhhhcee
Confidence 999996 7888875543
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.2e-11 Score=112.66 Aligned_cols=201 Identities=12% Similarity=0.151 Sum_probs=120.8
Q ss_pred eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
..+...+.+.+|+|||+.|+..+.+ ..|.+|++.+++.. .+....
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------------------------~l~~~~-------- 247 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------------------------LVASFR-------- 247 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE------------------------EeccCC--------
Confidence 3466789999999999999987743 46999998776421 122222
Q ss_pred cccccceeEEEEeecCCCcEEEE-EeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363 109 LEIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
....+++|+|+ |+.++. .+.++ .|.+||+.+++......... .. ....|+|||+.
T Consensus 248 ----g~~~~~~~SpD--G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~---------~~-------~~~~~spDG~~ 305 (433)
T PRK04922 248 ----GINGAPSFSPD--GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG---------ID-------TEPTWAPDGKS 305 (433)
T ss_pred ----CCccCceECCC--CCEEEEEEeCCCCceEEEEECCCCCeEECccCCC---------Cc-------cceEECCCCCE
Confidence 22457899755 776654 45555 69999999887654332211 01 14689999997
Q ss_pred eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c-C--CeEEEEeC
Q 015363 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-D--LRINLWNL 261 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d--~~i~iwd~ 261 (408)
+ +++...++...+|. +.... ....+. ..+......++|+|+|+.++.. . + ..|.+||+
T Consensus 306 l-----------~f~sd~~g~~~iy~-~dl~~----g~~~~l--t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 306 I-----------YFTSDRGGRPQIYR-VAASG----GSAERL--TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred E-----------EEEECCCCCceEEE-EECCC----CCeEEe--ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 7 23333444444443 21111 111111 1122234468999999998865 3 3 36999999
Q ss_pred CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCC
Q 015363 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQS 315 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~ 315 (408)
.++ .... +. +........|+|+| +.++..+.+ +.|.++++..+
T Consensus 368 ~~g-~~~~--------Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 368 STG-SVRT--------LT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCC-CeEE--------CC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCC
Confidence 743 3322 22 12233467999999 766665543 46778888544
No 231
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.44 E-value=2.7e-11 Score=98.21 Aligned_cols=173 Identities=10% Similarity=0.229 Sum_probs=124.4
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEe-CCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFER-TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
....|...|++|+|+|..+.|++|+.|..-.+|.. +++. ++....+..++
T Consensus 50 tls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~---------------------WkptlvLlRiN-------- 100 (361)
T KOG1523|consen 50 TLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT---------------------WKPTLVLLRIN-------- 100 (361)
T ss_pred ehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe---------------------eccceeEEEec--------
Confidence 34568999999999999999999999999999997 4443 22233344455
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..+++|.|+|. .+.||+|+.-+.|.||-++...--.+.+.
T Consensus 101 ----rAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKh---------------------------------- 140 (361)
T KOG1523|consen 101 ----RAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKH---------------------------------- 140 (361)
T ss_pred ----cceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhh----------------------------------
Confidence 67999999876 55999999999999987764431111000
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
. ...+...|++++|+|++-+|++| .|+..++|..--.+
T Consensus 141 --------------------------------i-------kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~-- 179 (361)
T KOG1523|consen 141 --------------------------------I-------KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG-- 179 (361)
T ss_pred --------------------------------h-------CCccccceeeeeccCCcceecccccCcceeEEEEeeec--
Confidence 0 12334668889999998888888 78888888653110
Q ss_pred eeEeecCC---------------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 268 FNIVDVKP---------------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 268 ~~~~~~~~---------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
++-+| .++....+++..+.|+|+| ..|+-.+.|..+.+-|.....
T Consensus 180 ---Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 180 ---VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ---cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence 00000 1122346789999999999 999999999999999987654
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=2.1e-11 Score=101.38 Aligned_cols=204 Identities=14% Similarity=0.171 Sum_probs=138.4
Q ss_pred CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (408)
Q Consensus 48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 127 (408)
..|++|-.+|.+.+|..+.+... ...+..+..+ ..+..+.-+|... .
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~h-------------------ss~l~~la~g-------------~g~~~~r~~~~~p-~ 162 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLH-------------------SSKLIKLATG-------------PGLYDVRQTDTDP-Y 162 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccc-------------------cccceeeecC-------------CceeeeccCCCCC-c
Confidence 35888889999999998865421 0111223333 3355666654433 3
Q ss_pred EEEEEeCC--CeEEEEEcCCCcEEEEeccCCCCc-ccCCCCCeEeecCCceeeEEccC--CCeeecccccccCccccCCC
Q 015363 128 LYLLSTND--KTIKLWKVQEKKVKKVFDWNVHPE-KAAGNGPIFGSHVSAIPKSYMAN--GGCGERNFGCASNDSSFPPG 202 (408)
Q Consensus 128 ~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~ 202 (408)
.+|+|+.. ..+++||++.. .+++.....+. ...-.-+++.. .+.|.+. ... +++++
T Consensus 163 Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~t-----di~Fl~g~~~~~------------fat~T 223 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWIT-----DIRFLEGSPNYK------------FATIT 223 (412)
T ss_pred eEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeec-----cceecCCCCCce------------EEEEe
Confidence 77779988 89999999988 44444433221 11011123322 3444444 333 48899
Q ss_pred CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCC
Q 015363 203 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (408)
Q Consensus 203 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (408)
.-+.+++|| ...+ .+++..+ .--..+++++...|.++++++| .-+.+..||++....... .+.+-
T Consensus 224 ~~hqvR~YD-t~~q-----RRPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~-------~~kg~ 289 (412)
T KOG3881|consen 224 RYHQVRLYD-TRHQ-----RRPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC-------GLKGI 289 (412)
T ss_pred cceeEEEec-Cccc-----CcceeEe-ccccCcceeeeecCCCcEEEEecccchhheecccCceeecc-------ccCCc
Confidence 999999999 4321 2333333 3445779999999999999999 899999999994443332 26777
Q ss_pred cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
.+.++++..+|.+ .++|+++-|+.+||+|+.+.+++
T Consensus 290 tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred cCCcceEEEcCCC-ceEEeeccceeEEEeecccchhh
Confidence 8899999999999 99999999999999999996554
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3e-10 Score=99.01 Aligned_cols=163 Identities=13% Similarity=0.208 Sum_probs=105.2
Q ss_pred eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE--e-c
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS--A-D 252 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~-~ 252 (408)
.+.|++-|.-|-.+........-.+-....++++.+ ..+. .+... ....++|.++.|+|+++-|++ | .
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~-t~g~------s~~V~--L~k~GPVhdv~W~~s~~EF~VvyGfM 292 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA-TQGE------SVSVP--LLKEGPVHDVTWSPSGREFAVVYGFM 292 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEE-ecCc------eEEEe--cCCCCCceEEEECCCCCEEEEEEecc
Confidence 467777776654332222221112223345566655 2211 11111 233588999999999988876 4 6
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCceeccccccccccc
Q 015363 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQE 329 (408)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (408)
-..+.|||++ ....+.+ ..++=.++-|+|.| ++++.++- .|.|-+||+.+.+.+ ..+...
T Consensus 293 PAkvtifnlr-~~~v~df----------~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i----~~~~a~- 355 (566)
T KOG2315|consen 293 PAKVTIFNLR-GKPVFDF----------PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLI----AKFKAA- 355 (566)
T ss_pred cceEEEEcCC-CCEeEeC----------CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhc----cccccC-
Confidence 8899999999 5544432 24455789999999 77776654 489999999986544 333333
Q ss_pred CCCCccccccccceeEEEEEccCCCEEEEe--C-----CCeEEEEECCCCCCceeee
Q 015363 330 APGTRSFFTEIIASISDIKFARNGRHILSR--D-----YMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 330 ~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~-----d~~v~~wd~~~~~~~~~~~ 379 (408)
.-+-+.|+|||++++++ + |+.++||+.. |..+...
T Consensus 356 -------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt--G~~l~~~ 397 (566)
T KOG2315|consen 356 -------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT--GSLLHEK 397 (566)
T ss_pred -------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec--Cceeehh
Confidence 23557999999999986 3 5889999995 5655543
No 234
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.6e-10 Score=103.12 Aligned_cols=207 Identities=13% Similarity=0.110 Sum_probs=117.4
Q ss_pred cceeEEEEeecCCCcE--EE-EEeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 113 EKINKIRWCQSANSAL--YL-LSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~--l~-~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
..+..-+|+|+ |+. ++ +...++ .|.+.++.+++...+....... . ...|+|||+.|.
T Consensus 185 ~~~~sP~wSPD--G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~---------~-------~p~wSPDG~~La 246 (428)
T PRK01029 185 SLSITPTWMHI--GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ---------L-------MPTFSPRKKLLA 246 (428)
T ss_pred CCcccceEccC--CCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc---------c-------ceEECCCCCEEE
Confidence 34667899866 554 32 333443 5777788888766655443221 1 468999998872
Q ss_pred cccccccCccccCCCC----CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEE--
Q 015363 188 RNFGCASNDSSFPPGG----VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLW-- 259 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iw-- 259 (408)
++... +..+..|+ +.... .+...+. ...........+|+|||+.|+.. .++...+|
T Consensus 247 -----------f~s~~~g~~di~~~~~~-~~~g~---~g~~~~l-t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 247 -----------FISDRYGNPDLFIQSFS-LETGA---IGKPRRL-LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred -----------EEECCCCCcceeEEEee-cccCC---CCcceEe-ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 32222 22233344 22110 1111121 12222334567999999987765 45655555
Q ss_pred eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCceecccccccccccCCCCccc
Q 015363 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 336 (408)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (408)
++...+..... +..+...+....|+|+| +.|+..+.+ ..|.+||+.+++.. .+...
T Consensus 311 ~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~-----~Lt~~-------- 369 (428)
T PRK01029 311 QIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDY-----QLTTS-------- 369 (428)
T ss_pred ECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeE-----EccCC--------
Confidence 44322221221 23334456788999999 777665543 47999999887542 22211
Q ss_pred cccccceeEEEEEccCCCEEEE-eC---CCeEEEEECCCCCCceeee
Q 015363 337 FTEIIASISDIKFARNGRHILS-RD---YMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 337 ~~~h~~~i~~~~~spdg~~l~s-~~---d~~v~~wd~~~~~~~~~~~ 379 (408)
...+....|+|||++|+. +. ...|.+||+.. ++..+..
T Consensus 370 ----~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-g~~~~Lt 411 (428)
T PRK01029 370 ----PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT-KKTRKIV 411 (428)
T ss_pred ----CCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCEEEee
Confidence 124567899999998874 32 26788889875 4444333
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.7e-11 Score=110.09 Aligned_cols=199 Identities=12% Similarity=0.164 Sum_probs=117.4
Q ss_pred eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.. .+....
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~------------------------~l~~~~-------- 239 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR------------------------VVANFK-------- 239 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE------------------------EeecCC--------
Confidence 3567789999999999999887643 35999998876531 122122
Q ss_pred cccccceeEEEEeecCCCcEEEE-EeCCCeEEEEEc--CCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363 109 LEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
..+...+|+|+ |+.|+. .+.++...+|.+ .++......... +.. ....|+|||+.
T Consensus 240 ----g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------~~~-------~~~~wSpDG~~ 297 (427)
T PRK02889 240 ----GSNSAPAWSPD--GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS---------GID-------TEPFFSPDGRS 297 (427)
T ss_pred ----CCccceEECCC--CCEEEEEEccCCCceEEEEECCCCCcEECCCCC---------CCC-------cCeEEcCCCCE
Confidence 33567899765 777764 567887666654 444433321111 001 14689999998
Q ss_pred eecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cC---CeEEEEeC
Q 015363 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---LRINLWNL 261 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---~~i~iwd~ 261 (408)
+ +++....+...+|. +..... ...+. ..........+|+|+|++++.. .+ ..|.+||+
T Consensus 298 l-----------~f~s~~~g~~~Iy~-~~~~~g----~~~~l--t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 298 I-----------YFTSDRGGAPQIYR-MPASGG----AAQRV--TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred E-----------EEEecCCCCcEEEE-EECCCC----ceEEE--ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 7 24444456666666 322111 11111 1111223457899999998865 33 26999999
Q ss_pred CCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-C--eEEEEEcC
Q 015363 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G--SIRLIDMR 313 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g--~i~iwd~~ 313 (408)
.++. ...+ ... .....+.|+|+| +.|+..+.+ | .+.+.++.
T Consensus 360 ~~g~-~~~l--------t~~-~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 360 ATGQ-VTAL--------TDT-TRDESPSFAPNG-RYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CCCC-eEEc--------cCC-CCccCceECCCC-CEEEEEEecCCCEEEEEEECC
Confidence 8443 3221 111 223578999999 666666543 3 35555553
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=6e-11 Score=94.89 Aligned_cols=112 Identities=15% Similarity=0.229 Sum_probs=75.8
Q ss_pred cceeEEEEeecCCCcEEEEE--eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 113 EKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
++|.+++|+|+ |+.||+. ..++.|.+||++ .+....+... ... .+.|+|+|+.+
T Consensus 60 ~~I~~~~WsP~--g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~----------~~n-------~i~wsP~G~~l---- 115 (194)
T PF08662_consen 60 GPIHDVAWSPN--GNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQ----------PRN-------TISWSPDGRFL---- 115 (194)
T ss_pred CceEEEEECcC--CCEEEEEEccCCcccEEEcCc-ccEeEeecCC----------Cce-------EEEECCCCCEE----
Confidence 45999999876 6676554 467899999997 3323322211 111 58999999998
Q ss_pred ccccCccccCCC---CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c------CCeEEEEe
Q 015363 191 GCASNDSSFPPG---GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D------DLRINLWN 260 (408)
Q Consensus 191 ~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~------d~~i~iwd 260 (408)
+.++ ..|.+.+|| +...+ .+. ......++.++|+|+|++|+++ . |..++||+
T Consensus 116 --------~~~g~~n~~G~l~~wd-~~~~~------~i~---~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 116 --------VLAGFGNLNGDLEFWD-VRKKK------KIS---TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred --------EEEEccCCCcEEEEEE-CCCCE------Eee---ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 5443 357899999 44211 111 2222457899999999999986 2 78899999
Q ss_pred CCCCCce
Q 015363 261 LEISNQS 267 (408)
Q Consensus 261 ~~~~~~~ 267 (408)
.. ++..
T Consensus 178 ~~-G~~l 183 (194)
T PF08662_consen 178 FQ-GRLL 183 (194)
T ss_pred ec-CeEe
Confidence 97 4433
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=3e-10 Score=103.83 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=121.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+...+|+|+ |++++.+..+ ..|++||+.+++......... ... ...|+|+|+.+
T Consensus 190 ~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~---------~~~-------~~~~spDg~~l--- 248 (417)
T TIGR02800 190 EPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQREKVASFPG---------MNG-------APAFSPDGSKL--- 248 (417)
T ss_pred CceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC---------Ccc-------ceEECCCCCEE---
Confidence 45788889655 8888887643 489999999886554433221 111 47899999876
Q ss_pred cccccCccccCCCCC--ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEEeCCC
Q 015363 190 FGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEI 263 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~ 263 (408)
+++.+.+ ..|.+|+ +..... ..+ ..+........|+|+++.|+.. .++ .|.++|+..
T Consensus 249 --------~~~~~~~~~~~i~~~d-~~~~~~-------~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 249 --------AVSLSKDGNPDIYVMD-LDGKQL-------TRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred --------EEEECCCCCccEEEEE-CCCCCE-------EEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 2333333 4566666 332111 111 2333334567899999988764 333 577778773
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
. .... +..+...+..+.|+|++ .+++.++.++ .|.+||+.++.. ..+...
T Consensus 312 ~-~~~~--------l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~------------ 364 (417)
T TIGR02800 312 G-EVRR--------LTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTDT------------ 364 (417)
T ss_pred C-CEEE--------eecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccCC------------
Confidence 3 3222 22234456788999999 7787777765 788999887543 222211
Q ss_pred cceeEEEEEccCCCEEEEeC-C---CeEEEEECCCCCCceeeeee
Q 015363 341 IASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 341 ~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~~~~~~~~~~~ 381 (408)
.......|+|||++|+..+ + ..+.+.+.. ++....+..
T Consensus 365 -~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~--g~~~~~~~~ 406 (417)
T TIGR02800 365 -GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD--GRFRARLPL 406 (417)
T ss_pred -CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC--CceeeECCC
Confidence 1233468999999888763 2 345666653 455555543
No 238
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.1e-08 Score=85.07 Aligned_cols=299 Identities=10% Similarity=0.121 Sum_probs=179.3
Q ss_pred ccCcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeec---CCeEEEEEeCCC--CCCCCccccccccccccc
Q 015363 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDT--RDNGGQRRDLEMMDYSMS 85 (408)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~ 85 (408)
+..-..|++...-++....+.+.+.+.++-|+|+|++++|.++-. +|.|--|.++.. ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--------------- 79 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--------------- 79 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------------
Confidence 445567888865677777788889999999999999999988865 477888887753 221
Q ss_pred CCCccceee--eeccCCcccccccccccccceeEEEEeecCCCcEEEEEe-CCCeEEEEEcCC-CcEEEEeccCCCCccc
Q 015363 86 RHPEFRYKT--EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKA 161 (408)
Q Consensus 86 ~~p~~~~~~--~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~ 161 (408)
++. ...+ .+-..+++ +++|++++++. .-|.|.++-++. |........-.+....
T Consensus 80 ------~ln~~~~~g--------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~ 137 (346)
T COG2706 80 ------FLNRQTLPG--------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG 137 (346)
T ss_pred ------EeeccccCC--------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC
Confidence 111 1122 22467788 45688888876 568999999865 4433221111111000
Q ss_pred CCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEe
Q 015363 162 AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN 241 (408)
Q Consensus 162 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 241 (408)
+. ..-...-.....+.|+++++ ++..-....|.+|+ +..... ....... .......+.|.|
T Consensus 138 -p~--~rQ~~~h~H~a~~tP~~~~l-----------~v~DLG~Dri~~y~-~~dg~L--~~~~~~~--v~~G~GPRHi~F 198 (346)
T COG2706 138 -PH--ERQESPHVHSANFTPDGRYL-----------VVPDLGTDRIFLYD-LDDGKL--TPADPAE--VKPGAGPRHIVF 198 (346)
T ss_pred -CC--ccccCCccceeeeCCCCCEE-----------EEeecCCceEEEEE-cccCcc--ccccccc--cCCCCCcceEEE
Confidence 00 00000001246788999887 22223334566777 442111 1111111 133456789999
Q ss_pred CCCCCEEEEe--cCCeEEEEeCCCCCce---eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCeEEEEEcCCC
Q 015363 242 NSDGETFISA--DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQS 315 (408)
Q Consensus 242 ~~~~~~l~~~--~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~ 315 (408)
+|++++.... -+++|.+|..+..... ++.+..-|..+.+ ..+...|..+|+| ++|.++.. ...|.++.+...
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-TNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC-CCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCC
Confidence 9999988775 5999999999854333 3333333444444 4556789999999 77776543 457888877654
Q ss_pred ceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-C-CeEEEEECCCCCCceeee
Q 015363 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATF 379 (408)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d-~~v~~wd~~~~~~~~~~~ 379 (408)
.-. -.+.+.. ..+....++..|+|.|++|+++. + ..|.+|..+...-.+..+
T Consensus 277 ~g~----L~~~~~~--------~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 277 GGK----LELVGIT--------PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCE----EEEEEEe--------ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 221 1111110 11123468899999999999883 3 789999887643334333
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.34 E-value=2.5e-10 Score=93.63 Aligned_cols=205 Identities=12% Similarity=0.227 Sum_probs=139.4
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-..+++++.++++...|++|-..|++.=+.+...-. ...+...+..|. .
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~------------~ 115 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ------------A 115 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh------------c
Confidence 356799999999999999999999998887654321 111234456666 7
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
.|..+.|+- .-+++++.+.|..+.---.+.+..+.-....... . .+.+.-. +
T Consensus 116 ~v~~~if~~--~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~--------------t--~~~~d~~--~-------- 167 (404)
T KOG1409|consen 116 RVSAIVFSL--THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA--------------S--ALQFDAL--Y-------- 167 (404)
T ss_pred ceeeEEecC--CceeEEEeccccceEEEeeccCCcccceEeeccC--------------C--CCceeeE--E--------
Confidence 799999964 3569999999987764444444332211111000 0 0000000 2
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
.+.|...+.|.+.. +.... -..+.. ..+|.+.+.+++|.|....|.+| .|..+.+||+. ..+....
T Consensus 168 ----~fvGd~~gqvt~lr-~~~~~----~~~i~~-~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~-- 234 (404)
T KOG1409|consen 168 ----AFVGDHSGQITMLK-LEQNG----CQLITT-FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY-- 234 (404)
T ss_pred ----EEecccccceEEEE-EeecC----CceEEE-EcCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee--
Confidence 26777777776644 21111 112222 38999999999999999999999 99999999998 4443332
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
.+.+|...|..+...+-- +.+.+++.||.|.+||++..
T Consensus 235 ----el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 235 ----ELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ----eeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccce
Confidence 267889999999888887 88999999999999998754
No 240
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=7e-12 Score=108.61 Aligned_cols=166 Identities=21% Similarity=0.271 Sum_probs=118.0
Q ss_pred ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC-CceEEEEeCCCe
Q 015363 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGS 306 (408)
Q Consensus 229 ~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~ 306 (408)
+.+|.+.|++++|+.+|.+|++| +|-.+.|||.- ..+.+..+ -++|...|.++.|-|.. .+++++|..|..
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSI------STGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecch-hcceeeee------ecccccceeEEeeeccCCCeEEEeccCcce
Confidence 58999999999999999999999 99999999998 44444443 57899999999999853 378899999999
Q ss_pred EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC-CEEEEe-CCCeEEEEECCCCCCceeeeeeccc
Q 015363 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
|+++|+...+. --..|........+.-|...|..++-.|++ ..+-++ .||+|+-+|++.+..+-.....|..
T Consensus 119 i~lfdl~~~~~------~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 119 IKLFDLDSSKE------GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred EEEEecccccc------cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 99999986432 111122222233455667899999999998 445566 4799999999974333333322222
Q ss_pred c----------cceEEecCCCeeeee---eceeeec
Q 015363 385 L----------RPKVMHSSKNYFMGL---DNIHTLY 407 (408)
Q Consensus 385 ~----------~~~~~~~~~~~~~~~---d~~~~~~ 407 (408)
. ..+..++....++++ |.|-+||
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY 228 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY 228 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence 2 222224555666655 7777777
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.1e-10 Score=102.75 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=117.9
Q ss_pred cceeEEEEeecCCCcEEEEEeC-CC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTN-DK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+.+..|+|+ |+.|+..+. ++ .|.+||+.+++.......... .. ...|+|||+.+
T Consensus 218 ~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~---------~~-------~~~wSPDG~~L--- 276 (448)
T PRK04792 218 EPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI---------NG-------APRFSPDGKKL--- 276 (448)
T ss_pred CcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCC---------cC-------CeeECCCCCEE---
Confidence 55888999765 888887653 33 688889988876544332211 11 46899999977
Q ss_pred cccccCccccCCCCCce--eeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEEeCCC
Q 015363 190 FGCASNDSSFPPGGVSS--LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEI 263 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~ 263 (408)
+++...++. |.++| +...+ .+.+ ..+.......+|+||++.++.. .++ .|.++|+.+
T Consensus 277 --------a~~~~~~g~~~Iy~~d-l~tg~-------~~~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 277 --------ALVLSKDGQPEIYVVD-IATKA-------LTRI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred --------EEEEeCCCCeEEEEEE-CCCCC-------eEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 233444554 55555 32211 1111 2333455678999999988764 344 466667763
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CC--eEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
+ +...+ +..+ ......+|+|+| +.|+..+. ++ .|.++|+.++.. ..+....
T Consensus 340 g-~~~~L------t~~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~~~----------- 393 (448)
T PRK04792 340 G-KVSRL------TFEG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTSTR----------- 393 (448)
T ss_pred C-CEEEE------ecCC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccCCC-----------
Confidence 3 32221 1122 223457999999 66665544 44 456678777643 1121110
Q ss_pred cceeEEEEEccCCCEEEEe-C-CC--eEEEEECCCCCCceeeeeeccc
Q 015363 341 IASISDIKFARNGRHILSR-D-YM--TLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 341 ~~~i~~~~~spdg~~l~s~-~-d~--~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
......|+|||++|+.. . ++ .+.+++. .+...+.+..+.+
T Consensus 394 --~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~--~G~~~~~l~~~~g 437 (448)
T PRK04792 394 --LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI--DGRFKARLPAGQG 437 (448)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEEC--CCCceEECcCCCC
Confidence 11234799999988765 2 33 4667776 3666666665433
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.2e-10 Score=102.01 Aligned_cols=127 Identities=12% Similarity=0.140 Sum_probs=102.5
Q ss_pred CCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc
Q 015363 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (408)
Q Consensus 243 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 321 (408)
.+...++-| ..|.|.+|++.. ++....+ .-..|.+.|.++.++.+- ..|.+++.|+.+..|+.......
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~-g~it~~~-----st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~--- 137 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAG-GEITAKL-----STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVII--- 137 (541)
T ss_pred CCceEEEeecCCccEEEEEecC-CeEEEEE-----ecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceee---
Confidence 345567778 899999999984 4433322 236799999999999888 89999999999999999987543
Q ss_pred ccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCC
Q 015363 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSK 394 (408)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (408)
+.+... ...+.+++.+|||+.|++++. .|++||+++ ++.+.+|.||.++.+.+.+.-.
T Consensus 138 -~~~~~~------------~~~~~sl~is~D~~~l~~as~-~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 138 -RIWKEQ------------KPLVSSLCISPDGKILLTASR-QIKVLDIET-KEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred -eeeccC------------CCccceEEEcCCCCEEEeccc-eEEEEEccC-ceEEEEecCCCcceEEEEEEEe
Confidence 444444 256889999999999999985 999999998 8999999999999888775443
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=1e-10 Score=108.91 Aligned_cols=189 Identities=16% Similarity=0.146 Sum_probs=136.7
Q ss_pred CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (408)
Q Consensus 126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (408)
...++.+..++.+.+||...+............ ..+ ....+-++++.-++ ++|+-.+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-------~l~----~~~~~g~s~~~~~i------------~~gsv~~ 155 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-------TLY----SSLIIGDSAEELYI------------ASGSVFG 155 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceE-------EEE----eEEEEeccCcEEEE------------Eeccccc
Confidence 457888899999999999877554433221110 000 00012233333343 8899999
Q ss_pred eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (408)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
.|.+|+ ... +. .+. .+.+|.+.+..+.++.||+++++. +|.++++|++++...... ..-+|...
T Consensus 156 ~iivW~-~~~-dn----~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-------~~fgHsaR 220 (967)
T KOG0974|consen 156 EIIVWK-PHE-DN----KPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-------TGFGHSAR 220 (967)
T ss_pred cEEEEe-ccc-cC----Ccc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc-------ccccccce
Confidence 999999 431 11 111 248999999999999999999999 999999999996554431 25679999
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCe
Q 015363 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMT 363 (408)
Q Consensus 285 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~ 363 (408)
|..+.|.|+ .+++++.|.+.++|+...... ..+.+|. ...|..++..++...++|+ .|+.
T Consensus 221 vw~~~~~~n---~i~t~gedctcrvW~~~~~~l-----~~y~~h~-----------g~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 221 VWACCFLPN---RIITVGEDCTCRVWGVNGTQL-----EVYDEHS-----------GKGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred eEEEEeccc---eeEEeccceEEEEEeccccee-----hhhhhhh-----------hcceeEEEEcCCceEEEeeccCcc
Confidence 999999988 699999999999996654322 4566663 2478999999988888887 4799
Q ss_pred EEEEECCC
Q 015363 364 LKLWDINM 371 (408)
Q Consensus 364 v~~wd~~~ 371 (408)
+++||+..
T Consensus 282 lk~~~l~~ 289 (967)
T KOG0974|consen 282 LKLWDLNG 289 (967)
T ss_pred hhhhhhhc
Confidence 99999975
No 244
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=1.8e-11 Score=119.73 Aligned_cols=224 Identities=16% Similarity=0.292 Sum_probs=157.7
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeec-cCCcccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKS 108 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~ 108 (408)
....|-..|.++.=+|...+.+||+.||.|++|....+... ..++ +..
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-----------------------~~~rt~g~-------- 2251 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-----------------------VCFRTAGN-------- 2251 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE-----------------------EEeeccCc--------
Confidence 33456678999999999999999999999999998766532 1222 122
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
++|+.+.|+ .+|..+..+..||.+.+|..... ....
T Consensus 2252 ----s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~pk---~~~s----------------------------------- 2287 (2439)
T KOG1064|consen 2252 ----SRVTRSRFN--HQGNKFGIVDGDGDLSLWQASPK---PYTS----------------------------------- 2287 (2439)
T ss_pred ----chhhhhhhc--ccCCceeeeccCCceeecccCCc---ceec-----------------------------------
Confidence 668999996 45789999999999999987611 1000
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe----cCCeEEEEeCCCC
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEIS 264 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~d~~i~iwd~~~~ 264 (408)
.+.|+.....+.|-. ..++++ +++.+.+||....
T Consensus 2288 ----------------------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2288 ----------------------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred ----------------------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 134444455555543 455553 5789999998744
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
.....+ -..|.+.++++++.|.. ++|++|+.+|.|++||++..++. +.++ .
T Consensus 2326 ~~~s~v-------~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~-----------------~ 2376 (2439)
T KOG1064|consen 2326 PMNSLV-------HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQ-----------------A 2376 (2439)
T ss_pred ccccee-------eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhh-----------------h
Confidence 433222 36799999999999999 99999999999999999976432 1111 1
Q ss_pred EEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceeeec
Q 015363 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLY 407 (408)
Q Consensus 345 ~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 407 (408)
+. ...++++|+ .|.++||++... ..++++..-. .+..+ ....+..+-+|.+.|||
T Consensus 2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~-~ll~~~p~e~-ak~gf-Fr~~g~Q~~v~~~nrif 2432 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEF-GLLHTFPSEH-AKQGF-FRNIGMQINVGQCNRIF 2432 (2439)
T ss_pred ----hh-hhheeeccCcccceEEEEcccc-chhhcCchhh-cccch-hhhcCceeeeccCceEE
Confidence 34 456888885 699999999974 7777775433 33333 33344677888888886
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=7.5e-10 Score=101.33 Aligned_cols=202 Identities=12% Similarity=0.114 Sum_probs=119.0
Q ss_pred cceeEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTND---KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..+....|+|+ |+.|+..+.+ ..|.+|++.+++...+...... .. ...|+|+|+.+
T Consensus 199 ~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~---------~~-------~~~~SpDG~~l--- 257 (430)
T PRK00178 199 EPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL---------NG-------APAWSPDGSKL--- 257 (430)
T ss_pred CceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC---------cC-------CeEECCCCCEE---
Confidence 55889999765 8888776633 3689999998876554332211 11 46899999876
Q ss_pred cccccCccccCCCCC--ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--CeEEEEeCCC
Q 015363 190 FGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLEI 263 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--~~i~iwd~~~ 263 (408)
+++...+ ..|.++| +..... +.+ ..+........|+|||+.++.. .+ ..|+++|+..
T Consensus 258 --------a~~~~~~g~~~Iy~~d-~~~~~~-------~~l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 258 --------AFVLSKDGNPEIYVMD-LASRQL-------SRV-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred --------EEEEccCCCceEEEEE-CCCCCe-------EEc-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 2333333 3566666 332211 111 2333445567899999877654 33 3577777763
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CC--eEEEEEcCCCceecccccccccccCCCCccccccc
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (408)
+ ....+. ..+ .......|+|+| +.++..+. ++ .|.+||+.++.. +.+...
T Consensus 321 g-~~~~lt------~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~~------------ 373 (430)
T PRK00178 321 G-RAERVT------FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTDT------------ 373 (430)
T ss_pred C-CEEEee------cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccCC------------
Confidence 3 332221 111 223457899999 77766654 33 588899987753 222111
Q ss_pred cceeEEEEEccCCCEEEEeC--C--CeEEEEECCCCCCceeeeeec
Q 015363 341 IASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 341 ~~~i~~~~~spdg~~l~s~~--d--~~v~~wd~~~~~~~~~~~~~~ 382 (408)
.......|+|||++|+..+ + ..|.+++++ +...+.+..+
T Consensus 374 -~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~ 416 (430)
T PRK00178 374 -SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA 416 (430)
T ss_pred -CCCCCceECCCCCEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence 0112458999999988652 2 456666664 4555555443
No 246
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=2.3e-09 Score=87.17 Aligned_cols=162 Identities=19% Similarity=0.282 Sum_probs=109.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
.+|.+|.+.++ .+++. ..+.|.||... +-+....+....+| .| .. +++-..+...
T Consensus 95 ~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NP-----kG-lC-------~~~~~~~k~~------ 150 (346)
T KOG2111|consen 95 SEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP-----KG-LC-------SLCPTSNKSL------ 150 (346)
T ss_pred cceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCC-----Cc-eE-------eecCCCCceE------
Confidence 66999999532 56554 45689999987 44545544443322 11 11 1111111112
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCe-EEEEeCCCCCceee
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR-INLWNLEISNQSFN 269 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~-i~iwd~~~~~~~~~ 269 (408)
+++-|-.-|.|.+-| +...... .-.. ..+|...|.|++.+-+|..+|++ ..|+ |+|||..++....+
T Consensus 151 -----LafPg~k~GqvQi~d-L~~~~~~----~p~~-I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 151 -----LAFPGFKTGQVQIVD-LASTKPN----APSI-INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred -----EEcCCCccceEEEEE-hhhcCcC----CceE-EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 245566779999888 4332221 1122 48999999999999999999999 6664 79999997666555
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
.- -......|.+|+|||+. .+||+++..|+|.|+.++...
T Consensus 220 ~R------RG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 220 LR------RGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ee------cCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence 31 12234669999999999 999999999999999988643
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=5.9e-10 Score=97.85 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=93.6
Q ss_pred cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (408)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 308 (408)
..|.+.|+++.++.+-..|.++ .|+.+..|+.. ..+.+.+ ..+....+.+++.+||+ ..+++++ ++|+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~-------~~~~~~~~~sl~is~D~-~~l~~as--~~ik 167 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI-------WKEQKPLVSSLCISPDG-KILLTAS--RQIK 167 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee-------eccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence 6788999999999888889988 99999999998 4555544 34556678899999999 8888875 6899
Q ss_pred EEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC-----CCEEEEeC--CCeEEEEECCC
Q 015363 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-----GRHILSRD--YMTLKLWDINM 371 (408)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd-----g~~l~s~~--d~~v~~wd~~~ 371 (408)
+||+.+++.+ ..|.+| .+.|+++.|--+ |.++.++. +..+.+|-+..
T Consensus 168 ~~~~~~kevv----~~ftgh------------~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 168 VLDIETKEVV----ITFTGH------------GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEccCceEE----EEecCC------------CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999765 666666 688999999887 88888863 47788887765
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.28 E-value=4.1e-09 Score=93.03 Aligned_cols=251 Identities=11% Similarity=0.110 Sum_probs=141.4
Q ss_pred CeE-EEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCC
Q 015363 48 DHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (408)
Q Consensus 48 ~~l-~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~ 126 (408)
+++ ++-..+|.|.+.|..+.+. +..+.... ..-..+.|+ +||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~-----------------------~~~i~~~~------------~~h~~~~~s--~Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV-----------------------VARIPTGG------------APHAGLKFS--PDG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE-----------------------EEEEE-ST------------TEEEEEE-T--T-S
T ss_pred cEEEEEecCCCEEEEEECCCCeE-----------------------EEEEcCCC------------CceeEEEec--CCC
Confidence 444 4555689999999877652 34444332 222345674 558
Q ss_pred cEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCce
Q 015363 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (408)
Q Consensus 127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (408)
.++++++.||.|.++|+.+.+..........+ ..+++++||+++ +++....+.
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~----------------~~i~~s~DG~~~-----------~v~n~~~~~ 101 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNP----------------RGIAVSPDGKYV-----------YVANYEPGT 101 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSEE----------------EEEEE--TTTEE-----------EEEEEETTE
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCCc----------------ceEEEcCCCCEE-----------EEEecCCCc
Confidence 89999999999999999999987766553322 268999999987 344557888
Q ss_pred eeeceeeeccccccccccceeec------cccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcc
Q 015363 207 LRLPVVVTSQETNLVAGCRRIYA------HAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANM 278 (408)
Q Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (408)
+.++| ....+ .++.+. .....++..|..+|....++.. +.+.|.+.|.......... .
T Consensus 102 v~v~D-~~tle------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~-------~ 167 (369)
T PF02239_consen 102 VSVID-AETLE------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT-------T 167 (369)
T ss_dssp EEEEE-TTT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE-------E
T ss_pred eeEec-ccccc------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee-------e
Confidence 99888 33222 122110 1133567788888888866665 6689988898754332211 1
Q ss_pred cCCcCCeEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCceecccccc-cccccCC-------C-----------------
Q 015363 279 EDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKL-FEEQEAP-------G----------------- 332 (408)
Q Consensus 279 ~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~-------~----------------- 332 (408)
...........|+|++ +++ ++...+..|.++|.++++.... +.. -..|..+ .
T Consensus 168 i~~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~-i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVAL-IDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp EE--TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEE-EE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred ecccccccccccCccc-ceeeecccccceeEEEeeccceEEEE-eeccccccccccccccCCCcceEEeeccccceeccc
Confidence 1123456789999999 655 4455677899999888754410 000 0000000 0
Q ss_pred ----Cc-----------cccccccceeEEEEEccCCCEEEEe----CC-CeEEEEECCCCCCceeeee
Q 015363 333 ----TR-----------SFFTEIIASISDIKFARNGRHILSR----DY-MTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 333 ----~~-----------~~~~~h~~~i~~~~~spdg~~l~s~----~d-~~v~~wd~~~~~~~~~~~~ 380 (408)
.. ..+.....+ .-+.-+|++++|... .+ ++|.++|.++ .+.++++.
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~ 311 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKVVKTIT 311 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEEEE-HH
T ss_pred ccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC-cceeEEEe
Confidence 00 001111122 456779999999987 45 9999999997 45555554
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=1.5e-08 Score=87.49 Aligned_cols=254 Identities=10% Similarity=0.116 Sum_probs=143.2
Q ss_pred ECCCCCeEEEeec----------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCC-ccccccccccc
Q 015363 43 FDKSGDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE-PEFDYLKSLEI 111 (408)
Q Consensus 43 ~s~~~~~l~sg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~-~~~~~~~~~~~ 111 (408)
+||||+.|+++.. +..|.+||..+.+.. ..+..-. +++. .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~-----------------------~~i~~p~~p~~~------~ 103 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI-----------------------ADIELPEGPRFL------V 103 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE-----------------------eEEccCCCchhh------c
Confidence 9999998877665 679999999887642 1111000 0000 0
Q ss_pred ccceeEEEEeecCCCcEEEEEe-C-CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 112 EEKINKIRWCQSANSALYLLST-N-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
......++++ +||+++++.. . +..|.+.|+.+++.+......... .++..+.. ..+....||..+.
T Consensus 104 ~~~~~~~~ls--~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-------~vy~t~e~-~~~~~~~Dg~~~~-- 171 (352)
T TIGR02658 104 GTYPWMTSLT--PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-------HIFPTAND-TFFMHCRDGSLAK-- 171 (352)
T ss_pred cCccceEEEC--CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-------EEEEecCC-ccEEEeecCceEE--
Confidence 0113456775 4588888765 4 789999999999988876653321 12211111 1223345555431
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceE-EEEeCC-CCCEEEEecCCeEEEEeCCCCCc-
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNS-DGETFISADDLRINLWNLEISNQ- 266 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~-~~~~l~~~~d~~i~iwd~~~~~~- 266 (408)
++-..+|.... .....+ ......+. .-.+.+ +|+.+.....|.|.+.|+.....
T Consensus 172 ---------v~~d~~g~~~~-------------~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 172 ---------VGYGTKGNPKI-------------KPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred ---------EEecCCCceEE-------------eeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 22222222111 000000 00000000 003344 88888888459999999753221
Q ss_pred ---eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEE-Ee---------CCCeEEEEEcCCCceecccccccccccCCCC
Q 015363 267 ---SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SS---------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (408)
Q Consensus 267 ---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (408)
.+.++......-....+...-++++|++ +.+.. .. ..+.|.++|..+++.+ ..+...
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~vG----- 298 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIELG----- 298 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeCC-----
Confidence 2222111000001123444459999999 55544 31 1258999999998765 333322
Q ss_pred ccccccccceeEEEEEccCCC-EEEEeC--CCeEEEEECCCCCCceeee
Q 015363 334 RSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 334 ~~~~~~h~~~i~~~~~spdg~-~l~s~~--d~~v~~wd~~~~~~~~~~~ 379 (408)
..+..++++||++ +|++.+ ++.|.+.|+.+ ++.++++
T Consensus 299 --------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 299 --------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred --------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 3688999999999 777664 48999999998 7888887
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=8.7e-10 Score=88.58 Aligned_cols=210 Identities=15% Similarity=0.093 Sum_probs=135.7
Q ss_pred cceeEEEEeecCC-Cc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 113 EKINKIRWCQSAN-SA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 113 ~~v~~v~~~p~~~-~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
+.+..+.|+-.+. |. .++-+..+|.|.++..........+..-... ........++.|++.+..+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~---------ki~~~~~lslD~~~~~~~i---- 136 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK---------KISVVEALSLDISTSGTKI---- 136 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh---------hhhheeeeEEEeeccCceE----
Confidence 5578888875433 33 4566678899999987755443333221100 0000012256778877776
Q ss_pred ccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCcee
Q 015363 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
+++..+|.+.+-+ ..+.. -+..+. .+.|........|+... +++.+| +|+.+..||++.++..+
T Consensus 137 --------~vs~s~G~~~~v~---~t~~~--le~vq~-wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 137 --------FVSDSRGSISGVY---ETEMV--LEKVQT-WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred --------EEEcCCCcEEEEe---cceee--eeeccc-ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 7777788777422 11111 111122 47888889888888654 677788 99999999999665443
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
.. ...-|...|.+|.-+|..+.++++|+.|-.|++||.|+... |+. ++.- .+.|+.+.
T Consensus 203 ~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k---Pl~--~~~v-----------~GGVWRi~ 260 (339)
T KOG0280|consen 203 WH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK---PLF--KAKV-----------GGGVWRIK 260 (339)
T ss_pred ee------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC---ccc--cCcc-----------ccceEEEE
Confidence 21 24568889999999988779999999999999999996532 222 2221 37899999
Q ss_pred EccC--CCEEEEeCCCeEEEEECCC
Q 015363 349 FARN--GRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 349 ~spd--g~~l~s~~d~~v~~wd~~~ 371 (408)
++|. +++|+++-.+-.+|-+.+.
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecc
Confidence 9994 3455555444556666554
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.8e-09 Score=96.49 Aligned_cols=205 Identities=12% Similarity=0.137 Sum_probs=115.4
Q ss_pred eccceEEEEECCCCCeE---EEeecCC--eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 34 EVDIISAIEFDKSGDHL---ATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l---~sg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
....+.+-+|+|||+.+ ++...+| .|.+.++.+++.. .+..+.+.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---------------------~lt~~~g~--------- 232 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---------------------KILALQGN--------- 232 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------------------EeecCCCC---------
Confidence 34456778999998742 2444444 4666677666431 22233332
Q ss_pred cccccceeEEEEeecCCCcEEEEEeC-----CCeEEEEEcCCC---cEEEEeccCCCCcccCCCCCeEeecCCceeeEEc
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~-----d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (408)
....+|+|+ |+.|+..+. |-.+..|++..+ +...+...... .. ....|+
T Consensus 233 ------~~~p~wSPD--G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~--------~~-------~~p~wS 289 (428)
T PRK01029 233 ------QLMPTFSPR--KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG--------TQ-------GNPSFS 289 (428)
T ss_pred ------ccceEECCC--CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC--------Cc-------CCeEEC
Confidence 446789755 878877653 223445676643 22222221100 00 146899
Q ss_pred cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c--CCeE
Q 015363 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--DLRI 256 (408)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--d~~i 256 (408)
|||+.+ +++...++...+|. +..... ....+.+ ..+...+....|+|||+.|+.. . ...|
T Consensus 290 PDG~~L-----------af~s~~~g~~~ly~-~~~~~~---g~~~~~l-t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I 353 (428)
T PRK01029 290 PDGTRL-----------VFVSNKDGRPRIYI-MQIDPE---GQSPRLL-TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQI 353 (428)
T ss_pred CCCCEE-----------EEEECCCCCceEEE-EECccc---ccceEEe-ccCCCCccceeECCCCCEEEEEEcCCCCcEE
Confidence 999976 24444456555555 221100 0111111 2333456788999999988865 3 3479
Q ss_pred EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCce
Q 015363 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSAL 317 (408)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~ 317 (408)
.+||+.++ .... +......+....|+|+| +.|+.... ...|.++|+..++.
T Consensus 354 ~v~dl~~g-~~~~--------Lt~~~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 354 CVYDLATG-RDYQ--------LTTSPENKESPSWAIDS-LHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEECCCC-CeEE--------ccCCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCE
Confidence 99999844 3332 22223345679999999 66654433 35788889887754
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.9e-09 Score=98.66 Aligned_cols=199 Identities=15% Similarity=0.185 Sum_probs=115.2
Q ss_pred eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
..+...+...+|+|||+.|+..+.+ ..|.+|++.+++.. .+....
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~------------------------~l~~~~-------- 242 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE------------------------QITNFE-------- 242 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE------------------------EccCCC--------
Confidence 3567788999999999998876644 36888898776421 111111
Q ss_pred cccccceeEEEEeecCCCcEEEE-EeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363 109 LEIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
..+...+|+|+ |+.|+. ...++ .|.+||+.+++......... .. ....|+|+|+.
T Consensus 243 ----g~~~~~~~SpD--G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~---------~~-------~~~~~spDg~~ 300 (430)
T PRK00178 243 ----GLNGAPAWSPD--GSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA---------ID-------TEPFWGKDGRT 300 (430)
T ss_pred ----CCcCCeEECCC--CCEEEEEEccCCCceEEEEECCCCCeEEcccCCC---------Cc-------CCeEECCCCCE
Confidence 22456889755 777764 44454 68888998887654332211 01 14689999987
Q ss_pred eecccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEE
Q 015363 186 GERNFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLW 259 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iw 259 (408)
+ +++...++ .|.+++ +...+ ..+....+ .......|+|+|+.++.. .++ .|.++
T Consensus 301 i-----------~f~s~~~g~~~iy~~d-~~~g~------~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 301 L-----------YFTSDRGGKPQIYKVN-VNGGR------AERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred E-----------EEEECCCCCceEEEEE-CCCCC------EEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 6 23333344 344444 22211 11111111 223356899999998865 333 57888
Q ss_pred eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCC
Q 015363 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQS 315 (408)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~ 315 (408)
|+.++. ...+ .. ........|+|+| +.++..+.+ ..|.++++...
T Consensus 361 dl~tg~-~~~l--------t~-~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 361 DLQRGS-VRIL--------TD-TSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ECCCCC-EEEc--------cC-CCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCC
Confidence 988433 2221 11 1112256899999 666655543 34666676543
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.23 E-value=1.6e-09 Score=99.10 Aligned_cols=197 Identities=14% Similarity=0.159 Sum_probs=117.5
Q ss_pred eeeccceEEEEECCCCCeEEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
..+...+.+.+|+|||++||.++.. ..|.+|++.++... .+..+.
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------------------------~~~~~~-------- 233 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------------------------KVASFP-------- 233 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE------------------------EeecCC--------
Confidence 3456678899999999999987654 47999998776421 122222
Q ss_pred cccccceeEEEEeecCCCcEEEE-EeCCC--eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCe
Q 015363 109 LEIEEKINKIRWCQSANSALYLL-STNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (408)
..+.+++|+|+ |+.|+. .+.++ .|.+|++.++........... . ....|+|+|+.
T Consensus 234 ----~~~~~~~~spD--g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~---------~-------~~~~~s~dg~~ 291 (417)
T TIGR02800 234 ----GMNGAPAFSPD--GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGI---------D-------TEPSWSPDGKS 291 (417)
T ss_pred ----CCccceEECCC--CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCC---------C-------CCEEECCCCCE
Confidence 33567889655 766664 44444 588889988765544322110 1 13578899987
Q ss_pred eecccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC---eEEEE
Q 015363 186 GERNFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL---RINLW 259 (408)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~---~i~iw 259 (408)
+ +++....+ .|.+++ +...+ ...+ ..+......+.|+|++++++.+ .++ .|.+|
T Consensus 292 l-----------~~~s~~~g~~~iy~~d-~~~~~-------~~~l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 292 I-----------AFTSDRGGSPQIYMMD-ADGGE-------VRRL-TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred E-----------EEEECCCCCceEEEEE-CCCCC-------EEEe-ecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 6 23333333 455545 22111 1111 2233456678999999998877 444 78888
Q ss_pred eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEEEEcC
Q 015363 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMR 313 (408)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~ 313 (408)
|+.+ +.. .. +... .......|+|++ +.|+..+.++ .+.+.+..
T Consensus 352 d~~~-~~~-~~-------l~~~-~~~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 352 DLDG-GGE-RV-------LTDT-GLDESPSFAPNG-RMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred eCCC-CCe-EE-------ccCC-CCCCCceECCCC-CEEEEEEeCCCcEEEEEEECC
Confidence 9874 322 22 1111 123456899999 6666665543 45555543
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.6e-09 Score=98.97 Aligned_cols=199 Identities=14% Similarity=0.134 Sum_probs=110.4
Q ss_pred eeccceEEEEECCCCCeEEEeecC-C--eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRG-G--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.. .+..+.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---------------------~lt~~~------------ 261 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---------------------KVTSFP------------ 261 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------------EecCCC------------
Confidence 456678899999999988876543 3 5778888766421 111122
Q ss_pred ccccceeEEEEeecCCCcEEEE-EeCCCe--EEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 110 EIEEKINKIRWCQSANSALYLL-STNDKT--IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~-~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
......+|+|+ |+.|+. .+.++. |.++|+.+++.......... . ....|+|||+.+
T Consensus 262 ---g~~~~~~wSPD--G~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~---------~-------~~p~wSpDG~~I 320 (448)
T PRK04792 262 ---GINGAPRFSPD--GKKLALVLSKDGQPEIYVVDIATKALTRITRHRAI---------D-------TEPSWHPDGKSL 320 (448)
T ss_pred ---CCcCCeeECCC--CCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCC---------c-------cceEECCCCCEE
Confidence 22346789755 777765 456664 77778888775543322110 1 146899999877
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEEeCC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLE 262 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~ 262 (408)
+++...++...+|. +.... ++..+. ..........+|+|||+.++.. .++ .|.++|+.
T Consensus 321 -----------~f~s~~~g~~~Iy~-~dl~~----g~~~~L--t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 321 -----------IFTSERGGKPQIYR-VNLAS----GKVSRL--TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred -----------EEEECCCCCceEEE-EECCC----CCEEEE--ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence 23333344444443 21111 111111 1111223456899999988765 444 45556776
Q ss_pred CCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe-CCC--eEEEEEcCC
Q 015363 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLIDMRQ 314 (408)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg--~i~iwd~~~ 314 (408)
++. ...+ ... .......|+|+| +.|+..+ .++ .+.+++...
T Consensus 383 ~g~-~~~l--------t~~-~~d~~ps~spdG-~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 383 TGA-MQVL--------TST-RLDESPSVAPNG-TMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CCC-eEEc--------cCC-CCCCCceECCCC-CEEEEEEecCCceEEEEEECCC
Confidence 332 2221 111 112245899999 6555544 344 366777643
No 255
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.9e-10 Score=97.39 Aligned_cols=270 Identities=13% Similarity=0.135 Sum_probs=177.1
Q ss_pred ceeeccceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccc
Q 015363 31 EVQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (408)
..+|...|..-.|-|. .+-+++++.||.|++=.+...... +-...+..|.
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~--------------------e~t~rl~~h~-------- 232 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV--------------------ENTKRLAPHE-------- 232 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce--------------------ecceeccccc--------
Confidence 4579899998889884 567999999999998876543211 0112345566
Q ss_pred cccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 109 ~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
++|..++.-|... ..|.+++.|+.+.-.|++.+.....+....... ...|. ...++..|-....
T Consensus 233 ----g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~----~~~v~-----L~~Ia~~P~nt~~-- 296 (559)
T KOG1334|consen 233 ----GPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE----KERVG-----LYTIAVDPRNTNE-- 296 (559)
T ss_pred ----CccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCC----cccee-----eeeEecCCCCccc--
Confidence 7788899877655 478899999999999998765433332111110 00111 1145555554432
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceee-----ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCC
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-----AHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~ 262 (408)
+++++.+..+++|| ..+.........+..+ .....-.|++++++.++.-|.++ .|-.|+++.-.
T Consensus 297 ---------faVgG~dqf~RvYD-~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 297 ---------FAVGGSDQFARVYD-QRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred ---------cccCChhhhhhhhc-ccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 48899999999999 5553333222222222 22334569999999887766666 89999999554
Q ss_pred CCCc--eeeEe---ecCCCcccCCcCC--eEEEEE-cCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc
Q 015363 263 ISNQ--SFNIV---DVKPANMEDLTEV--ITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (408)
Q Consensus 263 ~~~~--~~~~~---~~~~~~~~~~~~~--v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (408)
.+.. +...- ...+..+.+|... |..+-| -|.. .++++|+.=|.|.||+-.+++.+ ..+++..
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii----~~MegDr----- 436 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEII----RFMEGDR----- 436 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhHHH----HHhhccc-----
Confidence 2211 00000 0001125667543 556655 5666 89999999999999999998665 6666653
Q ss_pred cccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 335 SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 335 ~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
.-|+|+-=+|--..||+++ |..|+||--.+
T Consensus 437 -------~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 437 -------HVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred -------ceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 4799999999999999886 79999998743
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2.3e-09 Score=96.41 Aligned_cols=282 Identities=13% Similarity=0.159 Sum_probs=170.7
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
+.......|++|+....++|+|+.||.+++..+.+..... ..+. ++...+...-+.+.||+
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-~~~g-------laa~snLsmNQtLeGH~----------- 71 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-NKSG-------LAAASNLSMNQTLEGHN----------- 71 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcc-cccc-------cccccccchhhhhccCc-----------
Confidence 3456678999999999999999999999999988765321 1111 11222333446788998
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
+.|..+.|. .+.+.|-++..+|.|.+|-+-.+........+. +.++.. +++|..+|..+
T Consensus 72 -~sV~vvTWN--e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnR-------nKSvV~------SmsWn~dG~kI----- 130 (1189)
T KOG2041|consen 72 -ASVMVVTWN--ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNR-------NKSVVV------SMSWNLDGTKI----- 130 (1189)
T ss_pred -ceEEEEEec--cccccccccCCCceEEEEeeecccHHHHHhhCc-------CccEEE------EEEEcCCCcEE-----
Confidence 779999995 556788888999999999887765432221111 112221 68999999887
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 270 (408)
.....||.|.+=. + ++..... +. +. ......+.|++|.+.+..+ ..|.+++||.+. .-..++
T Consensus 131 -------cIvYeDGavIVGs-v---dGNRIwg--Ke-Lk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqg-nF~~Kl 193 (1189)
T KOG2041|consen 131 -------CIVYEDGAVIVGS-V---DGNRIWG--KE-LK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQG-NFERKL 193 (1189)
T ss_pred -------EEEEccCCEEEEe-e---ccceecc--hh-cc--hheccceeecccHHHHHhhhcCCcEEEecccc-cHHHhh
Confidence 5566676665433 1 1111110 00 01 1234577899999888888 899999999862 211110
Q ss_pred -----eecCCCcccCCcCCeEEEEEc--------CCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363 271 -----VDVKPANMEDLTEVITSAEFH--------PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (408)
Q Consensus 271 -----~~~~~~~~~~~~~~v~~~~~~--------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (408)
++.. ..+......+..+.|. |+. ..|+.+-.+|.+.|-.-.+.. .|+ .+..
T Consensus 194 ~~~c~Vn~t-g~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~---~Pv-v~dt---------- 257 (1189)
T KOG2041|consen 194 EKDCEVNGT-GIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDP---EPV-VVDT---------- 257 (1189)
T ss_pred hhceEEeee-eeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCC---CCe-EEec----------
Confidence 0000 0011122224455553 465 678888888887774322211 111 1111
Q ss_pred ccccceeEEEEEccCCCEEEEeC-C---------CeEEEEECCCCCCceeeeeecccccceEEe
Q 015363 338 TEIIASISDIKFARNGRHILSRD-Y---------MTLKLWDINMDSGPVATFQVHEHLRPKVMH 391 (408)
Q Consensus 338 ~~h~~~i~~~~~spdg~~l~s~~-d---------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~ 391 (408)
...|..+.|+++|.+|+.++ + +.|.++.- -|..+.+++........++-
T Consensus 258 ---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp--~G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 258 ---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP--YGHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred ---ccEeecceecCCCcEEEEccCcccccCccccceEEEecc--chhheEEEecCCceeeeeEE
Confidence 14688999999999999752 1 34555544 36667777665555555543
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.19 E-value=2.3e-07 Score=82.06 Aligned_cols=220 Identities=10% Similarity=0.111 Sum_probs=126.9
Q ss_pred cceeEEEEeecCCCcEEEEEeC----CCeEEEEEcCCC--cEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCee
Q 015363 113 EKINKIRWCQSANSALYLLSTN----DKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~----d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
.....++++| ++.+|.++.. ++.|..|++... ++..+-... ..+..+..++.+|+++.+
T Consensus 37 ~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-------------~~g~~p~~i~~~~~g~~l 101 (345)
T PF10282_consen 37 ENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-------------SGGSSPCHIAVDPDGRFL 101 (345)
T ss_dssp SSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-------------ESSSCEEEEEECTTSSEE
T ss_pred CCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-------------cCCCCcEEEEEecCCCEE
Confidence 3466788865 4778887765 579999988763 443322221 112233368899999987
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccc-ccccccccee---e---ccccccceEEEEeCCCCCEEEEe--cCCeEE
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQE-TNLVAGCRRI---Y---AHAHDYHINSISNNSDGETFISA--DDLRIN 257 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~---~---~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~ 257 (408)
+++-..++.|.+++ +.... ........+. - .........++.++|+++++++. ....|.
T Consensus 102 -----------~vany~~g~v~v~~-l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 102 -----------YVANYGGGSVSVFP-LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp -----------EEEETTTTEEEEEE-ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred -----------EEEEccCCeEEEEE-ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 23345688888887 44321 1111000000 0 01123557899999999988876 577899
Q ss_pred EEeCCCCCceeeE-eecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC--CCceecccccccccccCCCCc
Q 015363 258 LWNLEISNQSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTR 334 (408)
Q Consensus 258 iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~ 334 (408)
+|+++.....+.. ..+ .+. .....+.+.|+|++..++++...+++|.++++. .+... .+........
T Consensus 170 ~~~~~~~~~~l~~~~~~---~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~~~~---- 239 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSI---KVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--EIQTISTLPE---- 239 (345)
T ss_dssp EEEE-TTS-TEEEEEEE---ECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESCET----
T ss_pred EEEEeCCCceEEEeecc---ccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--EEEEeeeccc----
Confidence 9999854422211 111 122 245578999999994444555568899999998 33221 1111111100
Q ss_pred cccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363 335 SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM 371 (408)
Q Consensus 335 ~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~ 371 (408)
-+.+ ......++++|||++|+++. .++|.+|+++.
T Consensus 240 -~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 240 -GFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp -TSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred -cccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 0111 12578899999999999873 48999999953
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.1e-09 Score=95.92 Aligned_cols=165 Identities=12% Similarity=0.164 Sum_probs=113.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
+.++++..++- ..+|++|+.+|.|..||.+.......+...... .-.|-
T Consensus 176 ~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v-------------------~s~pg---------- 224 (703)
T KOG2321|consen 176 GELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV-------------------NSHPG---------- 224 (703)
T ss_pred ccceeeeecCc--cceEEecccCceEEEecchhhhhheeeeccccc-------------------CCCcc----------
Confidence 66899999754 448999999999999999987665544332110 00000
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEe
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 271 (408)
......|+++.|+.+|-.+++| .+|.|.|||+++....+..
T Consensus 225 -------------------------------------~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k- 266 (703)
T KOG2321|consen 225 -------------------------------------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK- 266 (703)
T ss_pred -------------------------------------ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-
Confidence 1111458999999999999999 9999999999965554421
Q ss_pred ecCCCcccCCcCCeEEEEEcCCCC-ceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc
Q 015363 272 DVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (408)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 350 (408)
-.+...+|..+.|.+.+. ..+++ .....++|||-.+|+.. ..++. +..++++++-
T Consensus 267 ------dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~----asiEp-------------t~~lND~C~~ 322 (703)
T KOG2321|consen 267 ------DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPM----ASIEP-------------TSDLNDFCFV 322 (703)
T ss_pred ------ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCce----eeccc-------------cCCcCceeee
Confidence 223356788999987742 34444 45678999999998543 23332 2569999999
Q ss_pred cCCCEEEEeCC-CeEEEEECC
Q 015363 351 RNGRHILSRDY-MTLKLWDIN 370 (408)
Q Consensus 351 pdg~~l~s~~d-~~v~~wd~~ 370 (408)
|++-+++++.+ ..+..|=+.
T Consensus 323 p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 323 PGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCceEEEecCCCcceeEEcc
Confidence 99989988854 555555443
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=4.9e-09 Score=86.18 Aligned_cols=264 Identities=14% Similarity=0.213 Sum_probs=149.6
Q ss_pred cceeeecccCcCc----ccceeeccceEEEEECCCCC--eEEEeecCCeEEEEEeCCCCCCCCcccccccccc-----c-
Q 015363 16 EWKFSQVFGERTA----GEEVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY-----S- 83 (408)
Q Consensus 16 ~w~~~~~~~~~~~----~~~~~h~~~V~~~~~s~~~~--~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~- 83 (408)
.+++...|....+ ...+.-...|+.+.|.+++. .+...+.|.+|++|.+....... ..-.++..+. .
T Consensus 61 ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~~~~~~~~~l 139 (433)
T KOG1354|consen 61 EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEEGPPGTITSL 139 (433)
T ss_pred ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccccCCCCcccee
Confidence 5667666643322 22334567899999999754 56677789999999987654321 0000111000 0
Q ss_pred -c------cCCCccceeeee-ccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCC-CcEEEEecc
Q 015363 84 -M------SRHPEFRYKTEF-QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDW 154 (408)
Q Consensus 84 -~------~~~p~~~~~~~~-~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~ 154 (408)
+ ....+..+...+ .+|. -.|++|.++ .|++.+++ +.|=.|.+|+++- .+.-.+...
T Consensus 140 r~p~~~~~~~~vea~prRv~aNaHt------------yhiNSIS~N--sD~Et~lS-ADdLRINLWnlei~d~sFnIVDI 204 (433)
T KOG1354|consen 140 RLPVEGRHDLEVEASPRRVYANAHT------------YHINSISVN--SDKETFLS-ADDLRINLWNLEIIDQSFNIVDI 204 (433)
T ss_pred eceeeccccceeeeeeeeeccccce------------eEeeeeeec--CccceEee-ccceeeeeccccccCCceeEEEc
Confidence 0 000011111111 3344 669999994 55666655 5677899999873 232232222
Q ss_pred CCCC-cccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccc---------ccccc
Q 015363 155 NVHP-EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN---------LVAGC 224 (408)
Q Consensus 155 ~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~ 224 (408)
.... +.. ...| ++..|+|..-.+ ++..+..|+|++-| ++....- +....
T Consensus 205 KP~nmEeL--teVI-------TsaEFhp~~cn~-----------f~YSSSKGtIrLcD-mR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 205 KPANMEEL--TEVI-------TSAEFHPHHCNV-----------FVYSSSKGTIRLCD-MRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred cccCHHHH--HHHH-------hhhccCHhHccE-----------EEEecCCCcEEEee-chhhhhhcchhhhhccccCCc
Confidence 2111 000 0000 133455554332 35677889999988 5421110 00001
Q ss_pred ceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCccc---C--CcCCe---EEEEEcCCCCc
Q 015363 225 RRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANME---D--LTEVI---TSAEFHPTHCN 296 (408)
Q Consensus 225 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~--~~~~v---~~~~~~p~~~~ 296 (408)
-+.+...--..|..+.|+++|+++++-+--+|++||+....++...+++...-.. . ....| ..++|+-++ .
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-S 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-c
Confidence 1111223335678899999999999988899999999866767766544221000 0 01112 467899888 8
Q ss_pred eEEEEeCCCeEEEEEcCCCce
Q 015363 297 MLAYSSSKGSIRLIDMRQSAL 317 (408)
Q Consensus 297 ~l~s~~~dg~i~iwd~~~~~~ 317 (408)
++++|+.....++++...|..
T Consensus 343 ~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred eEecccccceEEEecCCCCcc
Confidence 999999999999999766643
No 260
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=1.3e-08 Score=80.88 Aligned_cols=246 Identities=12% Similarity=0.062 Sum_probs=149.7
Q ss_pred CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCCc
Q 015363 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (408)
Q Consensus 48 ~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 127 (408)
.+||.|+..|...+|...+.+.. +.....|...+ .-+...+-+ ..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h----------------------~~~cd~snn~v---------~~~~r~cd~----~~ 129 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGH----------------------LYQCDVSNNDV---------TLVKRYCDL----KF 129 (344)
T ss_pred cEEEeccccceeeeecccCcccc----------------------eeeecccccch---------hhhhhhccc----cc
Confidence 47999999999999998876531 12222222110 001111211 22
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (408)
Q Consensus 128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (408)
.+..++.|.++++.+++.+........+.- ... .+.++++++.+ ++.+....|
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~--------~~n-------s~~~snd~~~~------------~~Vgds~~V 182 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNL--------TQN-------SLHYSNDPSWG------------SSVGDSRRV 182 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecccc--------cee-------eeEEcCCCceE------------EEecCCCcc
Confidence 567788999999999886644333322210 011 57888999887 777777777
Q ss_pred eeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE
Q 015363 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (408)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (408)
-.|. +.+.... ..++........-.+..|+.....+|++ .||++.|||++....+...+. .+-+.|.+.++
T Consensus 183 f~y~-id~~sey----~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s---strp~hnGa~R 254 (344)
T KOG4532|consen 183 FRYA-IDDESEY----IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS---STRPHHNGAFR 254 (344)
T ss_pred eEEE-eCCccce----eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc---ccCCCCCCceE
Confidence 7776 4331111 1111112223344577899999999999 999999999997665543321 23456899999
Q ss_pred EEEEcCCCCc-eEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEE
Q 015363 287 SAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (408)
Q Consensus 287 ~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~ 365 (408)
.+.|+|-|.. +|...-.=+.+.+.|+|++..+... ...+.. .+...+..|..-.|+.++.-+.+.+.-.+.
T Consensus 255 ~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I-~i~~d~-------~~~~~tq~ifgt~f~~~n~s~~v~~e~~~a 326 (344)
T KOG4532|consen 255 VCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI-VIPDDV-------ERKHNTQHIFGTNFNNENESNDVKNELQGA 326 (344)
T ss_pred EEEecCCCcceEEEEecCcceEEEEEcccCceeeEE-ecCccc-------cccccccccccccccCCCcccccccchhhh
Confidence 9999987643 4444445688999999998765211 111110 111113447777888877777666554666
Q ss_pred EEECCC
Q 015363 366 LWDINM 371 (408)
Q Consensus 366 ~wd~~~ 371 (408)
-|++..
T Consensus 327 e~ni~s 332 (344)
T KOG4532|consen 327 EYNILS 332 (344)
T ss_pred eeeccc
Confidence 677754
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=4.2e-08 Score=84.31 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=86.9
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCC-eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
.+...|.-..+.-. ++-++.|..|| .+-++|..+++....... -+.+. ++..+++|+.+
T Consensus 357 ~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e~kr~e~~---------lg~I~-------av~vs~dGK~~-- 416 (668)
T COG4946 357 GKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGEVKRIEKD---------LGNIE-------AVKVSPDGKKV-- 416 (668)
T ss_pred CCCCceEEEEEccC--CcceEEeccCCceEEEEecCCceEEEeeCC---------ccceE-------EEEEcCCCcEE--
Confidence 44466777777544 45788899999 999999999987765544 23455 68999999987
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c----CCeEEEEeCCC
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D----DLRINLWNLEI 263 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~----d~~i~iwd~~~ 263 (408)
+.+.....+.+.| +.+...... .....+-|+.++|+|+++++|-+ - ...|+++|+.
T Consensus 417 ----------vvaNdr~el~vid-idngnv~~i-------dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~- 477 (668)
T COG4946 417 ----------VVANDRFELWVID-IDNGNVRLI-------DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD- 477 (668)
T ss_pred ----------EEEcCceEEEEEE-ecCCCeeEe-------cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-
Confidence 7777777788777 544333222 23344679999999999999987 3 4578999998
Q ss_pred CCceee
Q 015363 264 SNQSFN 269 (408)
Q Consensus 264 ~~~~~~ 269 (408)
+++...
T Consensus 478 ~~Kiy~ 483 (668)
T COG4946 478 GGKIYD 483 (668)
T ss_pred CCeEEE
Confidence 444443
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=2e-07 Score=91.64 Aligned_cols=296 Identities=14% Similarity=0.186 Sum_probs=156.3
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCC---CccceeeeeccCCccccc------
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRH---PEFRYKTEFQSHEPEFDY------ 105 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~h~~~~~~------ 105 (408)
.+.|.|++||||+.+||..+.++++.+...+-.. ....++...+.....+ .=++..+.|+|..+.-..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~---i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDP---ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE---EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 4689999999999999999999998876532110 0001111100000000 000011222222211000
Q ss_pred -c-----cccccccceeEEEEeecCCCcEEEEEeC------CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363 106 -L-----KSLEIEEKINKIRWCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (408)
Q Consensus 106 -~-----~~~~~~~~v~~v~~~p~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (408)
+ ..+...+.-..|+| ..||++||+.+- -+.+|||+-+ |....+.+.... -
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g--------L------- 258 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG--------L------- 258 (928)
T ss_pred CCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC--------c-------
Confidence 0 00002234567889 678999999763 2689999876 544443331110 0
Q ss_pred ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c
Q 015363 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (408)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (408)
...++|-|.|..|+..+...+ ...|.+|+ - ++...++..-.+ ......|..+.|++|+.+||.. .
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~---------~~~VvFfE-r---NGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPD---------RHDVVFFE-R---NGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCC---------CcEEEEEe-c---CCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEec
Confidence 116899999998844332111 24455554 1 111111111111 2345678999999999999998 5
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC----CCcee---c-ccccc
Q 015363 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR----QSALC---D-THSKL 324 (408)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~~~~---~-~~~~~ 324 (408)
|. |.+|-..+.. -+....+ .+.. ...+..+.|+|..+..|...+.+|.+..++.. .+... + ..+..
T Consensus 325 ~~-vqLWt~~NYH-WYLKqei---~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaV 398 (928)
T PF04762_consen 325 DR-VQLWTRSNYH-WYLKQEI---RFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAV 398 (928)
T ss_pred CC-ceEEEeeCCE-EEEEEEE---EccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEE
Confidence 54 9999887432 1111111 0222 23344599999887888888887777665432 11000 0 00011
Q ss_pred ccc----------ccCCCCcccc-ccccceeEEEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363 325 FEE----------QEAPGTRSFF-TEIIASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (408)
Q Consensus 325 ~~~----------~~~~~~~~~~-~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~ 371 (408)
..| -.-|.+...+ -.....|.+++|++++..+++- +|+.|.+|....
T Consensus 399 IDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 399 IDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 111 1011111111 1234689999999988766665 689999998654
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=1.6e-08 Score=81.53 Aligned_cols=127 Identities=12% Similarity=0.056 Sum_probs=94.3
Q ss_pred eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 314 (408)
..++.|++.+..++++ ++|.+.+-+... ....+. +..+.|.-.++...|+...++++.+|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~-~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE-MVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce-eeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4577899999999999 899998544431 111111 236789999999999988889999999999999999994
Q ss_pred CceecccccccccccCCCCccccccccceeEEEEEcc-CCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
.+. ..+... +-|...|.++.-+| .+.+|++|+ |..|++||.++-++++..-...
T Consensus 198 p~~-----~i~~n~---------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~ 253 (339)
T KOG0280|consen 198 PKT-----FIWHNS---------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG 253 (339)
T ss_pred Ccc-----eeeecc---------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc
Confidence 322 112111 33567899998886 578999998 5899999999777877654443
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=5.2e-07 Score=90.44 Aligned_cols=287 Identities=11% Similarity=0.074 Sum_probs=152.7
Q ss_pred EEEEECCC-CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeecc--CCcccccccccccccce
Q 015363 39 SAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS--HEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 39 ~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--h~~~~~~~~~~~~~~~v 115 (408)
..++++++ ++++++-+.+++|++||..+... ..+.+ ..+.-+-.-....-...
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i------------------------~~ig~~g~~G~~dG~~~~a~f~~P 626 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI------------------------VQIGSTGEEGLRDGSFEDATFNRP 626 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE------------------------EEEccCCCcCCCCCchhccccCCC
Confidence 35788875 66777777788999999764321 01100 00000000000000235
Q ss_pred eEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCe--EeecCCceeeEEccCCCeeeccccc
Q 015363 116 NKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI--FGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..+++.++ +..|+++. ..+.|+++|+.++........ .........+.. ...-..+..++++|++..+
T Consensus 627 ~GIavd~~--gn~LYVaDt~n~~Ir~id~~~~~V~tlag~-G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L------ 697 (1057)
T PLN02919 627 QGLAYNAK--KNLLYVADTENHALREIDFVNETVRTLAGN-GTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV------ 697 (1057)
T ss_pred cEEEEeCC--CCEEEEEeCCCceEEEEecCCCEEEEEecc-CcccCCCCCChhhhHhhcCCCeEEEEecCCCeE------
Confidence 77888543 55555554 567899999988765443221 100000000000 0001234468888854433
Q ss_pred ccCccccCCCCCceeeeceeeecccccc-c--cccce----eeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCC
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNL-V--AGCRR----IYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--~~~~~----~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~ 263 (408)
+++...++.|++|+ ........ . +.... ......-.....|+++|++..|+.+ .++.|++||+.+
T Consensus 698 -----yVad~~~~~I~v~d-~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 698 -----YIAMAGQHQIWEYN-ISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred -----EEEECCCCeEEEEE-CCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 26667778888887 32211100 0 00000 0000111345679999999866555 689999999985
Q ss_pred CCceeeEeecCC------CcccC--------CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363 264 SNQSFNIVDVKP------ANMED--------LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (408)
Q Consensus 264 ~~~~~~~~~~~~------~~~~~--------~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (408)
..... ...-.+ ..+.. .......++++++| .++++-..+++|++||..++... .+.+..
T Consensus 772 g~~~~-~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~-----tiaG~G 844 (1057)
T PLN02919 772 GGSRL-LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVT-----TLAGTG 844 (1057)
T ss_pred CcEEE-EEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEE-----EEeccC
Confidence 43211 100000 00000 11124689999999 88888888999999999877542 121110
Q ss_pred CCCCc--cccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 330 APGTR--SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 330 ~~~~~--~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
..... ....+.......++++++|+++++-. ++.|++||+++
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 00000 00112224578899999999777764 59999999987
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=8.6e-08 Score=79.85 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=112.7
Q ss_pred eeEEccCCCeeecccccccCccccCC---CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPP---GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 251 (408)
-++++|+.+.| +++ +..+.|.-|. +...++.......... .+ .+...+++++++++++++
T Consensus 44 yl~~~~~~~~L------------Y~v~~~~~~ggvaay~-iD~~~G~Lt~ln~~~~-~g--~~p~yvsvd~~g~~vf~An 107 (346)
T COG2706 44 YLAVNPDQRHL------------YVVNEPGEEGGVAAYR-IDPDDGRLTFLNRQTL-PG--SPPCYVSVDEDGRFVFVAN 107 (346)
T ss_pred eEEECCCCCEE------------EEEEecCCcCcEEEEE-EcCCCCeEEEeecccc-CC--CCCeEEEECCCCCEEEEEE
Confidence 58999999887 433 2345666665 4332222111111111 22 233788999999999998
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCC----------eEEEEEcCCCCceEEEEeC-CCeEEEEEcCCCceec
Q 015363 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV----------ITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCD 319 (408)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~ 319 (408)
.-|.|.++-++..+.....+.. ..|.+. +....+.|++ ++|++..- -.+|.+|++..+.+..
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~-----~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQV-----VKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred ccCceEEEEEcccCCccccceee-----eecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCcccc
Confidence 6899999999865554443221 222222 7889999999 77777654 4579999999876542
Q ss_pred ccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCCCCCceeeeeeccc
Q 015363 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
.....++. .+..+.|.|+|++++...-. +++|.+|..+.....+..++.+..
T Consensus 182 ~~~~~v~~-------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 182 ADPAEVKP-------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred ccccccCC-------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence 22222211 25678999999999988764 499999999875455555555433
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=1.8e-07 Score=74.60 Aligned_cols=204 Identities=10% Similarity=0.043 Sum_probs=125.7
Q ss_pred cEEEEEeCCCeEEEEEcCCCcEE-EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363 127 ALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (408)
Q Consensus 127 ~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (408)
.+||.|+.-|...+|...+.+.. .....+... +.... ..+....-++.++.|.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~------------------v~~~~--------r~cd~~~~~~i~sndh 138 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNND------------------VTLVK--------RYCDLKFPLNIASNDH 138 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccc------------------hhhhh--------hhcccccceeeccCCc
Confidence 48999999999999999866532 222221110 00000 0000111136667788
Q ss_pred eeeeceeeeccccccccccceeecccccc--ceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCc
Q 015363 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (408)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
++++.+ +...... ..-|.. .+++++++++++++++. +...|..|.+......+..+.. ....
T Consensus 139 t~k~~~-~~~~s~~---------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-----a~t~ 203 (344)
T KOG4532|consen 139 TGKTMV-VSGDSNK---------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-----APTS 203 (344)
T ss_pred ceeEEE-EecCccc---------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-----cccC
Confidence 888776 3321110 012222 37889999999999987 8899999999855443322211 1122
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC--EEEEeC
Q 015363 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSRD 360 (408)
Q Consensus 283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~--~l~s~~ 360 (408)
..=.+.+|+... ..+|++..||++.|||+|...... ...... -..|.+.+..+.|++-|. +|+-..
T Consensus 204 D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm---~~~sst--------rp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 204 DHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPM---AEISST--------RPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred CCceeeeeccCc-ceEEEEecCCcEEEEEecccccch---hhhccc--------CCCCCCceEEEEecCCCcceEEEEec
Confidence 333678999988 899999999999999999765321 111111 122568999999998654 455454
Q ss_pred -CCeEEEEECCCCCCceeeeeeccc
Q 015363 361 -YMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 361 -d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
-+.+.+-|+++ ++-.+.+...+.
T Consensus 272 hfs~~hv~D~R~-~~~~q~I~i~~d 295 (344)
T KOG4532|consen 272 HFSRVHVVDTRN-YVNHQVIVIPDD 295 (344)
T ss_pred CcceEEEEEccc-CceeeEEecCcc
Confidence 48999999998 565555544433
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.03 E-value=1.5e-07 Score=81.67 Aligned_cols=281 Identities=12% Similarity=0.119 Sum_probs=163.1
Q ss_pred cceEEEEECCCCCeEEEeecCC---------------eEEEEEeCCCCCCCCc-ccccccccc-cccCCCccceeeeecc
Q 015363 36 DIISAIEFDKSGDHLATGDRGG---------------RVVLFERTDTRDNGGQ-RRDLEMMDY-SMSRHPEFRYKTEFQS 98 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~dg---------------~i~iw~~~~~~~~~~~-~~~~~~~~~-~~~~~p~~~~~~~~~~ 98 (408)
..|.-+.|+|.++||.+-++.+ .+.+||..++...-.. ....+..+- .+.++-+-.+...+-+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 4478899999999999976544 4899999887642111 111110000 0111111111111111
Q ss_pred CCcccc---------cccccccccceeEEEEeecCCCcEEEE-----EeCCCeEEEEEcCCCcEEEEeccCCCCcccCCC
Q 015363 99 HEPEFD---------YLKSLEIEEKINKIRWCQSANSALYLL-----STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (408)
Q Consensus 99 h~~~~~---------~~~~~~~~~~v~~v~~~p~~~~~~l~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
|.-.+. ..+.+. ...|....|+|..|+..|+. ...++++++|.+..+..+....+...
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~------- 223 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV------- 223 (561)
T ss_pred CeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-------
Confidence 110000 001111 26688899998877766665 35788999999986665544333211
Q ss_pred CCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC
Q 015363 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (408)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (408)
+.+.+.|.+.|+.+..+...... .-=+--....+.+++ +...+. +.. ..-.++|..++|.|.
T Consensus 224 --------~~~qLkW~~~g~~ll~l~~t~~k-snKsyfgesnLyl~~-~~e~~i-------~V~-~~~~~pVhdf~W~p~ 285 (561)
T COG5354 224 --------SGVQLKWQVLGKYLLVLVMTHTK-SNKSYFGESNLYLLR-ITERSI-------PVE-KDLKDPVHDFTWEPL 285 (561)
T ss_pred --------cccEEEEecCCceEEEEEEEeee-cccceeccceEEEEe-eccccc-------cee-ccccccceeeeeccc
Confidence 12257899999887544221110 000111234566666 332111 111 133578999999999
Q ss_pred CCEEEE--e-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---CeEEEEEcCCCcee
Q 015363 245 GETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALC 318 (408)
Q Consensus 245 ~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~ 318 (408)
++.|++ | .+..+.++|++ +.-... +. ...=..+.|+|.+ ++++.++-| |.|-+||......+
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr-~Nl~~~--------~P--e~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLR-GNLRFY--------FP--EQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred CCceeEEecccccceeecccc-cceEEe--------cC--CcccccccccCcc-cEEEEecCCccccceEEeccCCceEE
Confidence 988775 4 78999999999 332221 11 2223568999999 777776654 78999998876544
Q ss_pred cccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-------CCCeEEEEECCC
Q 015363 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-------DYMTLKLWDINM 371 (408)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-------~d~~v~~wd~~~ 371 (408)
. ..+.+. ...-+.|+|||+++.+. -|..|+|||+..
T Consensus 354 ~---~~~~~~--------------n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 A---GAFNGL--------------NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred E---EEeecC--------------CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 1 234433 23557899999998865 247899999963
No 268
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.4e-08 Score=95.17 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=138.9
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
.++|....+..+...++.++.++.+.|||...... ....++.+.. --
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~-----------------------~~~i~~~er~----------~l 133 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSV-----------------------LSKIQSDERC----------TL 133 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCce-----------------------ehhcCCCceE----------EE
Confidence 45555555556677889999999999999876642 1112211100 00
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
..++-+--+.+.-++++|+.-+.|.+|+......-..+.+| .|.++ .+.++.+|.++
T Consensus 134 ~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH--------eG~iF-------~i~~s~dg~~i-------- 190 (967)
T KOG0974|consen 134 YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH--------EGSIF-------SIVTSLDGRYI-------- 190 (967)
T ss_pred EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc--------CCceE-------EEEEccCCcEE--------
Confidence 11122211233447888999999999998833222223333 45566 78999999998
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (408)
++.+.|.++++|+ +...+... .. .-+|..++..+.|.|. .++++ .|.+.++|+.+ ..+ ++.
T Consensus 191 ----~s~SdDRsiRlW~-i~s~~~~~-----~~-~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~-l~~--- 252 (967)
T KOG0974|consen 191 ----ASVSDDRSIRLWP-IDSREVLG-----CT-GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQ-LEV--- 252 (967)
T ss_pred ----EEEecCcceeeee-cccccccC-----cc-cccccceeEEEEeccc--eeEEeccceEEEEEecc-cce-ehh---
Confidence 9999999999999 54433222 11 3689999999999998 77777 99999999877 332 222
Q ss_pred CCCcccCCc-CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 274 KPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 274 ~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
+.+|. ..+..++..+.. ...++++.|+.+++||+...
T Consensus 253 ----y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 253 ----YDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ----hhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhcc
Confidence 45554 458899999888 89999999999999998653
No 269
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.1e-08 Score=87.21 Aligned_cols=292 Identities=13% Similarity=0.137 Sum_probs=184.4
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
-|.+.|+-+.-+ ..+++.+++.||.++.|.-..-. -.+++..+..|.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL------------ 53 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL------------ 53 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH------------
Confidence 477777777544 46789999999999999854311 123455677777
Q ss_pred cceeEEEEeecCCCcEEEEEeC-CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
..|.+++.+ .++-++.+.+. |..++++|+++-......+...-|.. +-+....|..+
T Consensus 54 ~~I~sl~~S--~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---------------a~wv~skGd~~----- 111 (558)
T KOG0882|consen 54 GVILSLAVS--YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---------------AEWVTSKGDKI----- 111 (558)
T ss_pred HHHHhhhcc--ccceeEeeccCcccceeEEEeeccchhhhcccccCCCc---------------eEEecCCCCee-----
Confidence 557788774 55877888676 99999999998766544444332210 11222223111
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce-ee
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FN 269 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~ 269 (408)
..+.++.-.++.+.++| - ..+. .+...+..-|..+|..+.+.+.+..+++. ..|.|..|.....-+. -.
T Consensus 112 ---s~IAVs~~~sg~i~VvD-~-~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~ 182 (558)
T KOG0882|consen 112 ---SLIAVSLFKSGKIFVVD-G-FGDF----CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT 182 (558)
T ss_pred ---eeEEeecccCCCcEEEC-C-cCCc----CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence 01125556677777777 1 1111 11112236688999999999999999998 7999999998731111 11
Q ss_pred Eeec--CC----CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc-----cCCCC-----
Q 015363 270 IVDV--KP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ-----EAPGT----- 333 (408)
Q Consensus 270 ~~~~--~~----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~----- 333 (408)
-+.. +. ..+........++.|+|++ ..+++-+.|..|++++.++++.. +.+... ..+..
T Consensus 183 ~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklv----qeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 183 NLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLV----QEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred cccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhh----hhhhccchhhhhccccccccc
Confidence 0111 10 0122234556899999999 88999899999999999999654 111111 00000
Q ss_pred ----------cccccccc-ceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCC
Q 015363 334 ----------RSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSK 394 (408)
Q Consensus 334 ----------~~~~~~h~-~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (408)
+.-+..|. ..-..+.|...|++|+-|+-=.|++.++.+ +.+++.+-..+..|..-.++|+
T Consensus 258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q 328 (558)
T KOG0882|consen 258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQ 328 (558)
T ss_pred eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHh
Confidence 00011121 234567899999999999877899999998 6888888776665554444444
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=3.7e-08 Score=82.84 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=66.8
Q ss_pred cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (408)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 308 (408)
.+|-..++.++|+||+++++++ .|..|++-..... ..+..+ .-+|...|..++.-++. .|++++.|++|+
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~Iesf------clGH~eFVS~isl~~~~--~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESF------CLGHKEFVSTISLTDNY--LLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhh------ccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence 6888999999999999999999 8999999777622 222221 46799999999998874 699999999999
Q ss_pred EEEcCCCcee
Q 015363 309 LIDMRQSALC 318 (408)
Q Consensus 309 iwd~~~~~~~ 318 (408)
+||+++++.+
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999999765
No 271
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=6.2e-07 Score=78.79 Aligned_cols=75 Identities=13% Similarity=0.266 Sum_probs=51.0
Q ss_pred cCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363 282 TEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (408)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s 358 (408)
...|...+|-|.| ..+++-+. ..++.+|.+.+.....+.++.+... ..+.+.|+|.|++++.
T Consensus 445 ke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~--------------~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 445 KESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK--------------FANTVFWSPKGRFVVV 509 (698)
T ss_pred chheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhccc--------------ccceEEEcCCCcEEEE
Confidence 4567788999999 55554433 3578889887432211222333322 3578999999999987
Q ss_pred e---C-CCeEEEEECCC
Q 015363 359 R---D-YMTLKLWDINM 371 (408)
Q Consensus 359 ~---~-d~~v~~wd~~~ 371 (408)
+ + .|.+.++|++.
T Consensus 510 a~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDY 526 (698)
T ss_pred EEecccccceEEEecch
Confidence 6 4 38999999985
No 272
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.93 E-value=2.4e-06 Score=69.29 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=33.8
Q ss_pred ceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 342 ~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
..|..|..||||..||+.. +|.|.+|++.+ -++.+....++.
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs-L~~~~~W~~~eq 272 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPS-LRLQRSWKQDEQ 272 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCc-chhhcccchhhC
Confidence 5799999999999999996 69999999986 455555554433
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=5e-07 Score=81.47 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=111.5
Q ss_pred ceeEEEEeecCCCcE-EEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 114 KINKIRWCQSANSAL-YLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~-l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.+....|+|+ |+. ++..+. +..|.++|+.+++...+..... ... ...|+|||+.+.
T Consensus 189 ~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g---------~~~-------~~~~SPDG~~la-- 248 (419)
T PRK04043 189 LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG---------MLV-------VSDVSKDGSKLL-- 248 (419)
T ss_pred CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC---------cEE-------eeEECCCCCEEE--
Confidence 4567889765 664 554432 4578899999888776654322 111 357999998762
Q ss_pred cccccCccccCC--CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCC--eEEEEeCCC
Q 015363 190 FGCASNDSSFPP--GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDL--RINLWNLEI 263 (408)
Q Consensus 190 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~--~i~iwd~~~ 263 (408)
++. ..+..|.+++ +..... +.+ ..+........|+|||+.|+-. ..+ .|.+.|+..
T Consensus 249 ---------~~~~~~g~~~Iy~~d-l~~g~~-------~~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 249 ---------LTMAPKGQPDIYLYD-TNTKTL-------TQI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred ---------EEEccCCCcEEEEEE-CCCCcE-------EEc-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 222 2345566656 322211 111 2222223345799999877754 223 677778873
Q ss_pred CCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---------CeEEEEEcCCCceecccccccccccCCCCc
Q 015363 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---------GSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (408)
+...++ +..+. ....|+|+| +.++..+.. ..|.+.|+.++.. +.+...
T Consensus 311 -g~~~rl------t~~g~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~~------ 367 (419)
T PRK04043 311 -GSVEQV------VFHGK----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTAN------ 367 (419)
T ss_pred -CCeEeC------ccCCC----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCCC------
Confidence 333222 11111 124899999 666655543 3688888877753 222221
Q ss_pred cccccccceeEEEEEccCCCEEEEeC-C---CeEEEEECCCCCCceeeeee
Q 015363 335 SFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 335 ~~~~~h~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~~~~~~~~~~~ 381 (408)
.......|+|||+.|+... + ..+.+.++ .|.....+..
T Consensus 368 -------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l--~g~~~~~l~~ 409 (419)
T PRK04043 368 -------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL--NYNKSFLFPL 409 (419)
T ss_pred -------CCcCCeEECCCCCEEEEEEccCCcEEEEEEec--CCCeeEEeec
Confidence 1123478999999887652 2 34555666 4555555543
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=6.8e-09 Score=90.76 Aligned_cols=217 Identities=15% Similarity=0.135 Sum_probs=131.1
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
...+|.+.|.+++--.+.+-+++++.|.+|++|.++..... ..+..+.-+++.|+
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~----------------~~tsaCQfTY~aHk--------- 784 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE----------------IGTSACQFTYQAHK--------- 784 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc----------------cccceeeeEhhhcc---------
Confidence 45689999998876667777999999999999998754210 01122344678888
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.+|.++.|..+ - -..++.|+-|.+||.--++........... + .+..+.++
T Consensus 785 ---k~i~~igfL~~--l--r~i~ScD~giHlWDPFigr~Laq~~dapk~------~----------------a~~~ikcl 835 (1034)
T KOG4190|consen 785 ---KPIHDIGFLAD--L--RSIASCDGGIHLWDPFIGRLLAQMEDAPKE------G----------------AGGNIKCL 835 (1034)
T ss_pred ---Ccccceeeeec--c--ceeeeccCcceeecccccchhHhhhcCccc------C----------------CCceeEec
Confidence 78999999643 2 234567899999998766544321111100 0 01111111
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceee--ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
.......+++-++...+|+++| .+..+-. |.... ..+.+.-++++++.+.|+.++.+ ++|.|.+.|.+++ +
T Consensus 836 ~nv~~~iliAgcsaeSTVKl~D-aRsce~~----~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G-~ 909 (1034)
T KOG4190|consen 836 ENVDRHILIAGCSAESTVKLFD-ARSCEWT----CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNG-K 909 (1034)
T ss_pred ccCcchheeeeccchhhheeee-cccccce----eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCC-c
Confidence 1111111234457788899888 4332221 11111 13445678999999999999999 9999999999954 4
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEE-EEcCCC
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL-IDMRQS 315 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i-wd~~~~ 315 (408)
.++. .....-....++ .|.. +.|+....|.++.+ |....+
T Consensus 910 vINs-------wrpmecdllqla-apsd-q~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 910 VINS-------WRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred eecc-------CCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCC
Confidence 3332 111111122222 2444 67777777888877 766555
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.7e-07 Score=84.69 Aligned_cols=248 Identities=11% Similarity=0.112 Sum_probs=154.3
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
..+|+..|.-+.|+.+.+.|-|...+|.|.+|-+-.+... ..+.....
T Consensus 67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~-----------------------EEMiNnRn--------- 114 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC-----------------------EEMINNRN--------- 114 (1189)
T ss_pred hccCcceEEEEEeccccccccccCCCceEEEEeeecccHH-----------------------HHHhhCcC---------
Confidence 3479999999999999999999999999999998776531 11111111
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-EEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
++.|.+++| +.+|+.++..-.||.|.+=.++.++.- +.++..... .+.|++|.+.+
T Consensus 115 -KSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~-----------------hv~ws~D~~~~--- 171 (1189)
T KOG2041|consen 115 -KSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLA-----------------HVLWSEDLEQA--- 171 (1189)
T ss_pred -ccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccceecchhcchhecc-----------------ceeecccHHHH---
Confidence 166999999 567999999999999988877754321 111111110 47899998876
Q ss_pred cccccCccccCCCCCceeeeceeeec-cccccccccceee---ccccccceEEEEe--------CCCCCEEEEe-cCCeE
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTS-QETNLVAGCRRIY---AHAHDYHINSISN--------NSDGETFISA-DDLRI 256 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~v~~i~~--------~~~~~~l~~~-~d~~i 256 (408)
+.+-.+|.+.+|| -.+ ........|.... .......+-.+.| -|+...|+.+ .+|.+
T Consensus 172 ---------Lf~~ange~hlyd-nqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~ 241 (1189)
T KOG2041|consen 172 ---------LFKKANGETHLYD-NQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM 241 (1189)
T ss_pred ---------HhhhcCCcEEEec-ccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence 6777788999988 322 1111111221111 0111122444554 3577889999 89999
Q ss_pred EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---------eEEEEEcCCCceeccccccccc
Q 015363 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---------SIRLIDMRQSALCDTHSKLFEE 327 (408)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~ 327 (408)
.+-.-.....+.- + . ..-.+..+.|+++| .+||.++.+. .|.+|..- |.. +.+++.
T Consensus 242 QiMR~eND~~Pvv-~-------d-tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i----~gtlkv 306 (1189)
T KOG2041|consen 242 QIMRSENDPEPVV-V-------D-TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY-GHI----VGTLKV 306 (1189)
T ss_pred hhhhhcCCCCCeE-E-------e-cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-hhh----eEEEec
Confidence 8876664333322 1 1 13557889999999 8999887653 34444322 211 134443
Q ss_pred ccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~ 370 (408)
+ ...|++++|-..|-.++.+-|+.|.+=+++
T Consensus 307 p------------g~~It~lsWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 307 P------------GSCITGLSWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred C------------CceeeeeEEcCCceEEEEEecceEEEEeec
Confidence 3 256777777766666665555555444333
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=1.4e-08 Score=91.79 Aligned_cols=209 Identities=17% Similarity=0.349 Sum_probs=139.4
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
+.-.+++.++.++|.|+-+|.+++-|.. +-|++..-.. .+.+..+..
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~p-------------------pr~l~h~tp------------- 67 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTP-------------------PRWLHHITP------------- 67 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcCeE-EEeccCCCCC-------------------ceeeeccCc-------------
Confidence 3456788999999999999999988744 6676544211 111221221
Q ss_pred ccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
-.|-.+.|+|.+...+-++......-.+|++..
T Consensus 68 -w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~---------------------------------------------- 100 (1081)
T KOG0309|consen 68 -WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK---------------------------------------------- 100 (1081)
T ss_pred -chhcceecccCCCCceeEEecCcchhhhhhhhc----------------------------------------------
Confidence 237788898876655555554444445565432
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceee
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
+.+..|.++ +.+|...|+.+.|+|+. ..++++ .|-.+..||++.....+.
T Consensus 101 ----------ss~~aIef~------------------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y 152 (1081)
T KOG0309|consen 101 ----------SSSNAIEFV------------------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY 152 (1081)
T ss_pred ----------CCccceEEE------------------EecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence 122222221 37888899999999987 567777 899999999997776665
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 349 (408)
.. ..-......++|+-..+..+|+ +....|++||++.+.. ++..+++| ...|+.+.|
T Consensus 153 s~-------~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~---pl~s~K~~------------vs~vn~~~f 209 (1081)
T KOG0309|consen 153 ST-------SSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGST---PLCSLKGH------------VSSVNSIDF 209 (1081)
T ss_pred ee-------ecccccCceeeecccCcchhhh-ccCCceEEEeccCCCc---ceEEeccc------------ceeeehHHH
Confidence 42 2223445789999877566665 5677899999998863 33455554 578888888
Q ss_pred cc--CCCEEEEeCCCeEEEEECCC
Q 015363 350 AR--NGRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 350 sp--dg~~l~s~~d~~v~~wd~~~ 371 (408)
.. .+..+-++.|++|++||..+
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hhhhhhhhcccCCCCceeeecccc
Confidence 75 34444445689999999976
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.87 E-value=1.1e-05 Score=79.74 Aligned_cols=340 Identities=12% Similarity=0.111 Sum_probs=174.7
Q ss_pred eccceEEEEECCCCCeEEEeec---C---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccc-
Q 015363 34 EVDIISAIEFDKSGDHLATGDR---G---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL- 106 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~---d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~- 106 (408)
+.+.-..|+|-.||.++|+.+. . ..+|||+.++. .. ....+.+.....+++.|...++...+.+....+.+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-L~-stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-LQ-STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-EE-eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence 4556678999999999999875 2 57999998733 21 22234455555788999998887766533221111
Q ss_pred ---ccc----------ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCC
Q 015363 107 ---KSL----------EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (408)
Q Consensus 107 ---~~~----------~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (408)
..+ .....|..+.|+ ++++.||....|. |.+|-..+-..-......... ...+
T Consensus 286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn--~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-----~~~~------ 351 (928)
T PF04762_consen 286 FERNGLRHGEFTLRFDPEEEKVIELAWN--SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-----SESV------ 351 (928)
T ss_pred EecCCcEeeeEecCCCCCCceeeEEEEC--CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-----CCCC------
Confidence 001 234679999996 5577898877665 999999887643332222111 0000
Q ss_pred ceeeEEccCCCe-eecccc-cc--cCcc----c----cCCCCCceeeecee----eecccc--ccccccceeeccccccc
Q 015363 174 AIPKSYMANGGC-GERNFG-CA--SNDS----S----FPPGGVSSLRLPVV----VTSQET--NLVAGCRRIYAHAHDYH 235 (408)
Q Consensus 174 ~~~~~~~~~~~~-l~~~~~-~~--~~~~----~----~~~~~~~~i~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~ 235 (408)
..+.|+|.... +..+.. .. ...+ . ......+.+.+-|- +..... .+...+...+ .-...
T Consensus 352 -~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l--~~~~~ 428 (928)
T PF04762_consen 352 -NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL--ELPSP 428 (928)
T ss_pred -CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE--cCCCC
Confidence 02566665322 211110 00 0000 0 01112233333220 000000 1111122222 23467
Q ss_pred eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce-------eeEeecC---CCcccCCcCCeEEEEEcCCCCceEEEEeCC
Q 015363 236 INSISNNSDGETFISA-DDLRINLWNLEISNQS-------FNIVDVK---PANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-------~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 304 (408)
|.+++|++++..+++- .||.|.+|........ ...+... ..........+..+.|..+. .+++....+
T Consensus 429 v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 507 (928)
T PF04762_consen 429 VNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD-TLLVLSDSD 507 (928)
T ss_pred cEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC-EEEEEEecC
Confidence 9999999999877777 9999999986532211 0000000 00111224457888998887 666655554
Q ss_pred ---CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC-EEEEeCCCeEEEEECCCCCCceeeee
Q 015363 305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~-~l~s~~d~~v~~wd~~~~~~~~~~~~ 380 (408)
..+.++++....... .+...... .+.+..+...++.. .++-..+|.+...+.......+..+.
T Consensus 508 ~~~~~i~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp 574 (928)
T PF04762_consen 508 SNQSKIVLVDIDDSENSA-SVESSTEV------------DGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFP 574 (928)
T ss_pred cccceEEEEEeccCCCce-eEEEEecc------------CceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCC
Confidence 678888874332110 00111111 13455555566555 33334578888666654322222222
Q ss_pred ecccccceEEecCCC----eeeeeeceeeec
Q 015363 381 VHEHLRPKVMHSSKN----YFMGLDNIHTLY 407 (408)
Q Consensus 381 ~~~~~~~~~~~~~~~----~~~~~d~~~~~~ 407 (408)
.... ...++..... -++++++.++||
T Consensus 575 ~~c~-~~~~~~~~~~~~~~~~~GLs~~~~Ly 604 (928)
T PF04762_consen 575 QPCP-WMEVCQINGSEDKRVLFGLSSNGRLY 604 (928)
T ss_pred CCCc-EEEEEEECCccceeEEEEECCCCEEE
Confidence 2111 1122222222 367777777776
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.85 E-value=7e-08 Score=76.55 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=61.5
Q ss_pred cceEEEEeCCCCCEE-EEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363 234 YHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 311 (408)
..|.+++-+|..+.+ ++| +||.+-+||.+....+.. .+..|+..++.+-|+|..+..|.++++||.+.-||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 448999999987555 456 899999999996543332 26789999999999999989999999999999999
Q ss_pred cCC
Q 015363 312 MRQ 314 (408)
Q Consensus 312 ~~~ 314 (408)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=6.5e-08 Score=81.40 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=82.4
Q ss_pred EEEEeCCCCCEEEEe----cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 237 NSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 237 ~~i~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
+.+.+..+......+ +...+.+|.... ..+. .+-+|-..++.++|+||+ ++++++..|..|++-.+
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~--------~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~y 180 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADS-GRCE--------PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRY 180 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccc-cCcc--------hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEec
Confidence 344444444433333 455566666553 2222 257899999999999999 99999999999999776
Q ss_pred CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeee
Q 015363 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
..-..+ ..++-||..-|..++.-++ ..|++| +|++|++||+.+ |+.+.++..
T Consensus 181 pa~f~I---------------esfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s-gk~L~t~dl 233 (390)
T KOG3914|consen 181 PATFVI---------------ESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS-GKLLDTCDL 233 (390)
T ss_pred Ccccch---------------hhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc-CCcccccch
Confidence 543222 1234567789999999865 456666 689999999998 788776654
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.82 E-value=2.7e-06 Score=85.40 Aligned_cols=246 Identities=9% Similarity=0.072 Sum_probs=135.7
Q ss_pred ceEEEEECCCCCeEEEee-cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363 37 IISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 37 ~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (408)
....|++++++..|+++. ..+.|+++|..++... .+...+. .-..+.+.. ......-...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-----tlag~G~---------~g~~~~gg~-----~~~~~~ln~P 685 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVR-----TLAGNGT---------KGSDYQGGK-----KGTSQVLNSP 685 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-----EEeccCc---------ccCCCCCCh-----hhhHhhcCCC
Confidence 357889998887666654 3467898987665321 0000000 000000000 0000000224
Q ss_pred eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (408)
..++|.|. ++.++++.+.++.|++||..++...... .................-..+..++++|+++.+
T Consensus 686 ~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~~~-G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~L--------- 754 (1057)
T PLN02919 686 WDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRVFS-GDGYERNLNGSSGTSTSFAQPSGISLSPDLKEL--------- 754 (1057)
T ss_pred eEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEEEe-cCCccccCCCCccccccccCccEEEEeCCCCEE---------
Confidence 57899753 3556777778899999999887654322 111000000000000111345578999999865
Q ss_pred ccccCCCCCceeeeceeeecccccc-c-c-----ccceeec-------cccccceEEEEeCCCCCEEEEe-cCCeEEEEe
Q 015363 196 DSSFPPGGVSSLRLPVVVTSQETNL-V-A-----GCRRIYA-------HAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (408)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~-~-~-----~~~~~~~-------~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd 260 (408)
+++...++.|++|| +....... . + .....+- ...-.....++++++|+++++- .+++|++||
T Consensus 755 --YVADs~n~~Irv~D-~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD 831 (1057)
T PLN02919 755 --YIADSESSSIRALD-LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD 831 (1057)
T ss_pred --EEEECCCCeEEEEE-CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence 35666778999998 44321110 0 0 0000000 0011234688999999987777 899999999
Q ss_pred CCCCCceeeEeecCC------CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCce
Q 015363 261 LEISNQSFNIVDVKP------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 317 (408)
..+ +....+...-. ....+.......++++++| +++++-+.+++|++||+.++..
T Consensus 832 ~~t-g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 832 PAT-KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCC-CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 983 33333321100 0011222356789999999 8888888999999999988754
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.79 E-value=2.3e-06 Score=74.51 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=70.0
Q ss_pred EEEeCCCCCEEEEe------------cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe--C
Q 015363 238 SISNNSDGETFISA------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--S 303 (408)
Q Consensus 238 ~i~~~~~~~~l~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~ 303 (408)
.+.|++.|++|..- ....+.|+++.. . .+.. .....++|...+|.|.+ +.|++.+ .
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~-~i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~ 296 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-R-SIPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYM 296 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-c-ccce-------eccccccceeeeecccC-CceeEEeccc
Confidence 46788888877631 124567777762 2 1111 11457889999999999 5555544 5
Q ss_pred CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-C---CeEEEEECCC
Q 015363 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINM 371 (408)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d---~~v~~wd~~~ 371 (408)
+..+.++|++.. +. .. .++ +.=+.+.|+|.+++++.++ | |.+-+||...
T Consensus 297 pa~~s~~~lr~N-l~----~~--~Pe------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 297 PASVSVFDLRGN-LR----FY--FPE------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ccceeecccccc-eE----Ee--cCC------------cccccccccCcccEEEEecCCccccceEEeccCC
Confidence 889999999976 22 12 221 2335678999999888752 2 8999999865
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.7e-06 Score=74.89 Aligned_cols=283 Identities=14% Similarity=0.222 Sum_probs=147.4
Q ss_pred eeccceEEEEECCCCCeEEEeec-----------CCeEEEEEeCCCCCCCCcccccccccc----cccCCCccceeeeec
Q 015363 33 QEVDIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDY----SMSRHPEFRYKTEFQ 97 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~~ 97 (408)
.|. .|.-+.|||..+||+|-+. ...+.|||+.++...-.... . .... -.+++.+-++.+.+.
T Consensus 248 ~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~-~-~~~~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 248 YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV-I-KSPYLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceec-c-CCCccccceEEeccCCceeEEec
Confidence 354 3788999999999999653 25789999999865211111 0 0111 112233333333332
Q ss_pred cCC------cccccc--cccccccceeEEEEeecCCCcEEEEEeC-----CCeEEEEEcCCCcEEEEeccCCCCcccCCC
Q 015363 98 SHE------PEFDYL--KSLEIEEKINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (408)
Q Consensus 98 ~h~------~~~~~~--~~~~~~~~v~~v~~~p~~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
+.. +.|..+ +++.. +.|....|+|. +.+||.-.. -..+.+..+-+++.++......-
T Consensus 325 ~~sisIyEtpsf~lld~Kslki-~gIr~FswsP~--~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV------- 394 (698)
T KOG2314|consen 325 GNSISIYETPSFMLLDKKSLKI-SGIRDFSWSPT--SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV------- 394 (698)
T ss_pred cceEEEEecCceeeecccccCC-ccccCcccCCC--cceEEEEcccccCCcceEEEEecCccceeeeccceee-------
Confidence 211 001000 11111 45677777765 445554321 11344444444443333222110
Q ss_pred CCeEeecCCceeeEEccCCCeeecc-cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC
Q 015363 165 GPIFGSHVSAIPKSYMANGGCGERN-FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (408)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 243 (408)
....+-|-.+|.+|..- ..++.. -..+.-..+.++. +...+..... ..-...|...+|-|
T Consensus 395 --------sDckLhWQk~gdyLcvkvdR~tK~---~~~g~f~n~eIfr-ireKdIpve~-------velke~vi~FaWEP 455 (698)
T KOG2314|consen 395 --------SDCKLHWQKSGDYLCVKVDRHTKS---KVKGQFSNLEIFR-IREKDIPVEV-------VELKESVIAFAWEP 455 (698)
T ss_pred --------eccEEEeccCCcEEEEEEEeeccc---cccceEeeEEEEE-eeccCCCcee-------eecchheeeeeecc
Confidence 11145666777765221 000000 0122223344444 3222221111 12235688899999
Q ss_pred CCCEEEE--e--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---CCCeEEEEEcCCCc
Q 015363 244 DGETFIS--A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSA 316 (408)
Q Consensus 244 ~~~~l~~--~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~ 316 (408)
.|+.+++ | ...++.+|.+++......++. .+. ....+.+.|+|.| ++++.+. ..|.+.++|+....
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk----~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK----ELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCCCchhhhh----hhc--ccccceEEEcCCC-cEEEEEEecccccceEEEecchhh
Confidence 9998875 4 467889998884333222211 122 2446789999999 8777664 46889999987532
Q ss_pred eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-------CCeEEEEECC
Q 015363 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDIN 370 (408)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-------d~~v~~wd~~ 370 (408)
... .....| ...+.+-|.|.|+|+++++ |..-+||++.
T Consensus 529 ~k~---~~~~eh-------------~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 529 LKD---TASPEH-------------FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhh---ccCccc-------------cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 210 112222 3467899999999999873 2445677764
No 283
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.79 E-value=4.9e-07 Score=74.75 Aligned_cols=245 Identities=12% Similarity=0.146 Sum_probs=142.8
Q ss_pred eeeccceEEEEECCCCCeEEEeecCCeEEEEEe-CCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFER-TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 32 ~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
.+|.+.|++...-|...-+++.+.|.+++||-- +.++- .|+.. |.
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-----------------wpsI~-------~~---------- 66 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-----------------WPSIY-------HY---------- 66 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-----------------Cchhh-------hh----------
Confidence 367888888888888777999999999999963 33321 01100 11
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEe-ccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF-DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
...+++++.+.+. ...|+++-..|++.-+.+...-..... ..... ..+.+. ++.|+-..+.+
T Consensus 67 mP~~~~~~~y~~e--~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~-----h~~~v~-------~~if~~~~e~V--- 129 (404)
T KOG1409|consen 67 MPSPCSAMEYVSE--SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLA-----HQARVS-------AIVFSLTHEWV--- 129 (404)
T ss_pred CCCCceEeeeecc--ceEEEEEEecceEEEEEhhhhhhhcchhhhhhh-----hhccee-------eEEecCCceeE---
Confidence 1166888888643 567888888999888876532111110 00000 011122 34444444443
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe-cCCeEEEEeCCCCCc
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~iwd~~~~~~ 266 (408)
++.+.|..+. |. ....... .+| ....+.+..++- .+...| ..|.|..-.+.. ..
T Consensus 130 ---------~s~~~dk~~~-~h-c~e~~~~----------lg~-Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~-~~ 186 (404)
T KOG1409|consen 130 ---------LSTGKDKQFA-WH-CTESGNR----------LGG-YNFETPASALQFDALYAFVGDHSGQITMLKLEQ-NG 186 (404)
T ss_pred ---------EEeccccceE-EE-eeccCCc----------ccc-eEeeccCCCCceeeEEEEecccccceEEEEEee-cC
Confidence 5555555443 11 1110000 000 001111111111 133344 456665555542 21
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEE
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (408)
+..+ .++.+|...+++++|.|.. .+|.+|..|..+.+||+-.++-.. ..+. +|...|..
T Consensus 187 ~~~i-----~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~---~el~------------gh~~kV~~ 245 (404)
T KOG1409|consen 187 CQLI-----TTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTA---YELQ------------GHNDKVQA 245 (404)
T ss_pred CceE-----EEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCccee---eeec------------cchhhhhh
Confidence 1111 1368899999999999998 999999999999999997654321 3333 44577888
Q ss_pred EEEccCCCEEEEeC-CCeEEEEECCC
Q 015363 347 IKFARNGRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 347 ~~~spdg~~l~s~~-d~~v~~wd~~~ 371 (408)
+...+--+.|.+++ ||.|.+||.+.
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEeccc
Confidence 88777778888875 79999999986
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.5e-06 Score=73.60 Aligned_cols=202 Identities=13% Similarity=0.178 Sum_probs=121.2
Q ss_pred eeccceEEEEECCCCC--eEEE-----eecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccc
Q 015363 33 QEVDIISAIEFDKSGD--HLAT-----GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~--~l~s-----g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 105 (408)
-|...|+.+.+||.+. .+|+ ++.-+.|+||........ .. .....=|+.
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~----~~-------------~a~ksFFka------- 218 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH----QP-------------VANKSFFKA------- 218 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc----ch-------------hhhcccccc-------
Confidence 3678899999999743 5554 355678999987632210 00 000011121
Q ss_pred ccccccccceeEEEEeecCCCcEEEEEe--CC---------CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCc
Q 015363 106 LKSLEIEEKINKIRWCQSANSALYLLST--ND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (408)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~~~~~l~~~~--~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (408)
+ =..+.|.+-..+ +|+.++ -| .++++.+++...+...+.. .|+|.
T Consensus 219 -------d-kvqm~WN~~gt~-LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k---------~GPVh------ 274 (566)
T KOG2315|consen 219 -------D-KVQMKWNKLGTA-LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK---------EGPVH------ 274 (566)
T ss_pred -------c-eeEEEeccCCce-EEEEEEEeecCCCccccccceEEEEEecCceEEEecCC---------CCCce------
Confidence 1 235678655333 333332 23 3577777773333322222 45566
Q ss_pred eeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe---
Q 015363 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--- 251 (408)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--- 251 (408)
++.|+|+++.... +.|-.-..+.++| ++. .++. .-..++=+++-|+|.|++++.+
T Consensus 275 -dv~W~~s~~EF~V----------vyGfMPAkvtifn-lr~-------~~v~---df~egpRN~~~fnp~g~ii~lAGFG 332 (566)
T KOG2315|consen 275 -DVTWSPSGREFAV----------VYGFMPAKVTIFN-LRG-------KPVF---DFPEGPRNTAFFNPHGNIILLAGFG 332 (566)
T ss_pred -EEEECCCCCEEEE----------EEecccceEEEEc-CCC-------CEeE---eCCCCCccceEECCCCCEEEEeecC
Confidence 7999999987644 3345556777777 221 2222 2233556788999999998864
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC------CCeEEEEEcCCC
Q 015363 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQS 315 (408)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~ 315 (408)
-.|.|.+||+.+ .+++.. +.. ...+-..|+||| ++|++++. |..++||++...
T Consensus 333 NL~G~mEvwDv~n-~K~i~~-------~~a--~~tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 333 NLPGDMEVWDVPN-RKLIAK-------FKA--ANTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCCCceEEEeccc-hhhccc-------ccc--CCceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecCc
Confidence 379999999995 444322 222 223568999999 88888865 678999998644
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=4.6e-08 Score=80.65 Aligned_cols=131 Identities=14% Similarity=0.158 Sum_probs=94.7
Q ss_pred ccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC----ceeeEeecCCCcccCCcCCeEEEEEcC-CCCceEEEEeCCCe
Q 015363 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISN----QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGS 306 (408)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~ 306 (408)
...|.++.|...++++..| .+|.|..+|++... .+.. .--|...|+++..-. ++ +.|++.+.+|+
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--------rlyh~Ssvtslq~Lq~s~-q~LmaS~M~gk 322 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--------RLYHDSSVTSLQILQFSQ-QKLMASDMTGK 322 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--------EEEcCcchhhhhhhcccc-ceEeeccCcCc
Confidence 4568888899889999999 99999999998652 2222 223788899988776 55 78888899999
Q ss_pred EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeeccc
Q 015363 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
|++||+|.-+. ...+.++++|-+. ....-+...+....++++ +|...+||.++. +.++.+++-...
T Consensus 323 ikLyD~R~~K~-~~~V~qYeGHvN~----------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~s 389 (425)
T KOG2695|consen 323 IKLYDLRATKC-KKSVMQYEGHVNL----------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPYS 389 (425)
T ss_pred eeEeeehhhhc-ccceeeeeccccc----------ccccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCCc
Confidence 99999997643 2345777887321 122223445555666665 579999999997 788888766544
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=2.7e-07 Score=73.31 Aligned_cols=73 Identities=23% Similarity=0.392 Sum_probs=60.0
Q ss_pred CeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc-CCCEEEEeC-C
Q 015363 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-Y 361 (408)
Q Consensus 284 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-dg~~l~s~~-d 361 (408)
.|++++-+|...+++++|+.||.+.+||.+... .|...+..| ...|+.+-|+| ++..|++++ |
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ah------------k~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAH------------KAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHh------------hhhhhheeccCCCchheeEecCC
Confidence 389999999887888999999999999999763 334555555 57899999999 677888875 6
Q ss_pred CeEEEEECCC
Q 015363 362 MTLKLWDINM 371 (408)
Q Consensus 362 ~~v~~wd~~~ 371 (408)
|.+..||..+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999974
No 287
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=3.6e-08 Score=56.19 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=31.1
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEE
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~ 63 (408)
..+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357999999999999999999999999999997
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=7.7e-08 Score=84.37 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=115.7
Q ss_pred ecccccccCccccCCCCCceeeeceeeec-cccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTS-QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 265 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~ 265 (408)
+.+..-.+...+++++.|++|++|. ++. .+......|..++ ..|..+|.++.|-.+-++++++ |+.|++||.-.+.
T Consensus 739 Rai~AidNENSFiSASkDKTVKLWS-ik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr 815 (1034)
T KOG4190|consen 739 RAIAAIDNENSFISASKDKTVKLWS-IKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGR 815 (1034)
T ss_pred HHHHhcccccceeeccCCceEEEEE-eccccCccccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccc
Confidence 3344444556679999999999999 554 5555666777776 8999999999999888887765 5779999987444
Q ss_pred ceeeEeecCCCcccCCcCCeEEEEEcCC-CCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCccccccccce
Q 015363 266 QSFNIVDVKPANMEDLTEVITSAEFHPT-HCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
...+..+ ....+.+..+..-|+ ...++.+| +...+|+++|.+..... ..++.-..+.+ ...
T Consensus 816 ~Laq~~d------apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~----~E~kVcna~~P-------na~ 878 (1034)
T KOG4190|consen 816 LLAQMED------APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT----CELKVCNAPGP-------NAL 878 (1034)
T ss_pred hhHhhhc------CcccCCCceeEecccCcchheeeeccchhhheeeecccccce----eeEEeccCCCC-------chh
Confidence 3332211 111222333333333 21444444 67899999999987543 22222111111 256
Q ss_pred eEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeee
Q 015363 344 ISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 344 i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~ 379 (408)
+.+++..|.|++|+++ +.|+|.+-|.++ |+.+..+
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINsw 914 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSW 914 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccC
Confidence 8899999999999999 789999999998 6765544
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=5.8e-07 Score=81.70 Aligned_cols=254 Identities=10% Similarity=0.126 Sum_probs=147.0
Q ss_pred eEEEEECCC--CC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccc
Q 015363 38 ISAIEFDKS--GD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (408)
Q Consensus 38 V~~~~~s~~--~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (408)
|-.++|+|. .. .+++-+.. .-.+|++..... -...-.+.+|. ..
T Consensus 70 vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss~--------------------~aIef~lhghs------------ra 116 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSSS--------------------NAIEFVLHGHS------------RA 116 (1081)
T ss_pred hcceecccCCCCceeEEecCcc-hhhhhhhhcCCc--------------------cceEEEEecCc------------cc
Confidence 667788875 23 44544444 455899765432 11223467787 78
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
|+++.|.|... ..+++++-|-.+..||+++...-.-.....+ .....+.|+-....+
T Consensus 117 itd~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--------------s~asqVkwnyk~p~v-------- 173 (1081)
T KOG0309|consen 117 ITDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--------------SAASQVKWNYKDPNV-------- 173 (1081)
T ss_pred eeccccCCCCC-cceeeccccccceeeeccCCCcceeeeeccc--------------ccCceeeecccCcch--------
Confidence 99999998644 4899999999999999987643211110000 011145665444433
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCceeeEee
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 272 (408)
.+.+..+.|.+|| .+.. ..++.. +.+|...|+.++|+.-- ..+.++ .|++|+.||........+.
T Consensus 174 ----lasshg~~i~vwd-~r~g-----s~pl~s-~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~-- 240 (1081)
T KOG0309|consen 174 ----LASSHGNDIFVWD-LRKG-----STPLCS-LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR-- 240 (1081)
T ss_pred ----hhhccCCceEEEe-ccCC-----CcceEE-ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce--
Confidence 6667788899999 4332 223333 26677888888887543 334455 8999999999855443321
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
......+|..-++-|-|.-++.-- -.+..+.+++.+.... .......+.+...|.||...|....|-.
T Consensus 241 -----~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~------e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 241 -----TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL------EWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred -----eccccCcceeccccccCceeEeccccCCeeeeeccccchhh------hhccccCCcceeeecCcchHHHHHhhhh
Confidence 222356677777888763332211 1233455555443321 1111111223334555566676655543
Q ss_pred --------C--CCEEEEeC-CCeEEEEECCC
Q 015363 352 --------N--GRHILSRD-YMTLKLWDINM 371 (408)
Q Consensus 352 --------d--g~~l~s~~-d~~v~~wd~~~ 371 (408)
| .-.|++=+ |..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2 22577754 89999999865
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.66 E-value=9.2e-05 Score=62.31 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=129.3
Q ss_pred EEEECC-CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEE
Q 015363 40 AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (408)
Q Consensus 40 ~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v 118 (408)
++.|.+ ++.++++--..+.|..|+..++... .+.. .....+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------------------------~~~~--------------~~~~G~ 45 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE------------------------VIDL--------------PGPNGM 45 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE------------------------EEES--------------SSEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE------------------------EEec--------------CCCceE
Confidence 567888 6777777778899999998776421 1111 125667
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (408)
Q Consensus 119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (408)
++.. +++ .++.+..++. .++|..+++........... .... .+..+++.++|...
T Consensus 46 ~~~~-~~g-~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~-----~~~~-----~~ND~~vd~~G~ly------------ 100 (246)
T PF08450_consen 46 AFDR-PDG-RLYVADSGGI-AVVDPDTGKVTVLADLPDGG-----VPFN-----RPNDVAVDPDGNLY------------ 100 (246)
T ss_dssp EEEC-TTS-EEEEEETTCE-EEEETTTTEEEEEEEEETTC-----SCTE-----EEEEEEE-TTS-EE------------
T ss_pred EEEc-cCC-EEEEEEcCce-EEEecCCCcEEEEeeccCCC-----cccC-----CCceEEEcCCCCEE------------
Confidence 7752 334 5666666554 55599998776665552111 0001 12257777888754
Q ss_pred cCCCCC--------ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCc-e
Q 015363 199 FPPGGV--------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ-S 267 (408)
Q Consensus 199 ~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~-~ 267 (408)
++.... +.|..++ .. . +. ... ...-...+.|+|+|+++.|..+ ..+.|..|++..... .
T Consensus 101 ~t~~~~~~~~~~~~g~v~~~~---~~-~----~~-~~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 101 VTDSGGGGASGIDPGSVYRID---PD-G----KV-TVV-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL 170 (246)
T ss_dssp EEEECCBCTTCGGSEEEEEEE---TT-S----EE-EEE-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred EEecCCCccccccccceEEEC---CC-C----eE-EEE-ecCcccccceEECCcchheeecccccceeEEEeccccccce
Confidence 221111 3444433 11 1 11 111 1122457899999999988765 688899999874443 1
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
.....+ ..+....+..-.+++..+| ++.++....+.|.++|.+ ++.+ ..+.... ..++++
T Consensus 171 ~~~~~~--~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~~----~~i~~p~------------~~~t~~ 230 (246)
T PF08450_consen 171 SNRRVF--IDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKLL----REIELPV------------PRPTNC 230 (246)
T ss_dssp EEEEEE--EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEE----EEEE-SS------------SSEEEE
T ss_pred eeeeeE--EEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccEE----EEEcCCC------------CCEEEE
Confidence 111000 0122222346789999999 888887789999999988 6544 3333331 358899
Q ss_pred EEc-cCCCEEE
Q 015363 348 KFA-RNGRHIL 357 (408)
Q Consensus 348 ~~s-pdg~~l~ 357 (408)
+|. |+.+.|+
T Consensus 231 ~fgg~~~~~L~ 241 (246)
T PF08450_consen 231 AFGGPDGKTLY 241 (246)
T ss_dssp EEESTTSSEEE
T ss_pred EEECCCCCEEE
Confidence 994 6655554
No 291
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.65 E-value=1.8e-05 Score=71.26 Aligned_cols=132 Identities=12% Similarity=0.068 Sum_probs=79.0
Q ss_pred CCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccc
Q 015363 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (408)
Q Consensus 245 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 323 (408)
+..+..+ .++.+..||.++++..... + ... ...+.. .+ ..++.++.||.|..+|..+++.+.+. .
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~-~-----~~~----~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W~~-~ 306 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKR-D-----ASS----YQGPAV--DD-NRLYVTDADGVVVALDRRSGSELWKN-D 306 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEee-c-----cCC----ccCceE--eC-CEEEEECCCCeEEEEECCCCcEEEcc-c
Confidence 3455555 8899999999865544332 0 111 112222 34 46777788999999999988654210 0
Q ss_pred ccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeec
Q 015363 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDN 402 (408)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 402 (408)
.+... ....... .+..|++++ +|.|.++|.++ ++.+..++.+.........+.++.++...+
T Consensus 307 ~~~~~--------------~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 307 ELKYR--------------QLTAPAV--VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred cccCC--------------ccccCEE--ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 11110 1111112 355677664 69999999987 788888887664333333456677776666
Q ss_pred eeeec
Q 015363 403 IHTLY 407 (408)
Q Consensus 403 ~~~~~ 407 (408)
...||
T Consensus 370 dG~l~ 374 (377)
T TIGR03300 370 DGDLY 374 (377)
T ss_pred CceEE
Confidence 66665
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=1e-05 Score=73.16 Aligned_cols=193 Identities=8% Similarity=0.112 Sum_probs=107.8
Q ss_pred cceEEEEECCCCCe-EEEeecC---CeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 36 DIISAIEFDKSGDH-LATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 36 ~~V~~~~~s~~~~~-l~sg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
+.+....|+|||+. ++..+.+ ..|.++|+.+++.. .+. ...
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------------------~lt---~~~----------- 232 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------------------KIA---SSQ----------- 232 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------------------EEe---cCC-----------
Confidence 46778999999984 6654443 46888888776531 111 112
Q ss_pred ccceeEEEEeecCCCcEEEEE-eCC--CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 112 EEKINKIRWCQSANSALYLLS-TND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~-~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
+.+....|+|+ |+.++.. +.+ ..|.++++.+++..++....... ....|+|||+.+
T Consensus 233 -g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d----------------~~p~~SPDG~~I-- 291 (419)
T PRK04043 233 -GMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGID----------------VNGNFVEDDKRI-- 291 (419)
T ss_pred -CcEEeeEECCC--CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCcc----------------CccEECCCCCEE--
Confidence 33556789755 7666554 333 46777788888765543332110 135799999877
Q ss_pred ccccccCccccCCCCCc--eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--------CeE
Q 015363 189 NFGCASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--------LRI 256 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--------~~i 256 (408)
+++....+ .|.+.+ +... ...+....+. . ...|+|+|+.++.. .. ..|
T Consensus 292 ---------~F~Sdr~g~~~Iy~~d-l~~g------~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 292 ---------VFVSDRLGYPNIFMKK-LNSG------SVEQVVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred ---------EEEECCCCCceEEEEE-CCCC------CeEeCccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 24433344 344444 2221 1111111111 1 24899999988764 22 367
Q ss_pred EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-C--eEEEEEcCCC
Q 015363 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G--SIRLIDMRQS 315 (408)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g--~i~iwd~~~~ 315 (408)
.+.|+..+ .... +... .......|+||| +.++..+.+ + .+.+.++...
T Consensus 352 ~v~d~~~g-~~~~--------LT~~-~~~~~p~~SPDG-~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 352 YLISTNSD-YIRR--------LTAN-GVNQFPRFSSDG-GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEECCCC-CeEE--------CCCC-CCcCCeEECCCC-CEEEEEEccCCcEEEEEEecCCC
Confidence 88888743 3322 2221 122358999999 666555442 2 3566666544
No 293
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=2.4e-07 Score=91.92 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=112.5
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCcee
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 268 (408)
.++....+.++|+.||.+++|. +.... .+..+.......|+.+.|+.+|+.+..+ .||.+.+|... .+ ++
T Consensus 2215 ~sHp~~~~Yltgs~dgsv~~~~--w~~~~-----~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk-~~ 2285 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFE--WGHGQ-----QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK-PY 2285 (2439)
T ss_pred cCCCCCceEEecCCCceEEEEe--ccCCC-----eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc-ce
Confidence 3344444559999999999998 33221 1111122333788999999999999999 89999999998 33 22
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC---CCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (408)
. +...|........|-- .++++++. ++.+.+||..-.... . ..-. .|.+.++
T Consensus 2286 ~-------s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~-s--~v~~------------~H~~gaT 2340 (2439)
T KOG1064|consen 2286 T-------SWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN-S--LVHT------------CHDGGAT 2340 (2439)
T ss_pred e-------ccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc-c--eeee------------ecCCCce
Confidence 2 2577888888888864 35666543 688999997643211 0 1113 3457899
Q ss_pred EEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeecc
Q 015363 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (408)
Q Consensus 346 ~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~ 383 (408)
++++-|.-+.|++|+ +|.|++||++. .++.++++.-.
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~~~ 2378 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQALD 2378 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhhhh
Confidence 999999999999997 69999999996 57777776633
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.56 E-value=1.7e-05 Score=64.47 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=35.6
Q ss_pred CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccccccc
Q 015363 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (408)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (408)
....|..|..+||| .+||+...+|.|.+|++.+-... +.+...+
T Consensus 228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~----~~W~~~e 271 (282)
T PF15492_consen 228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQ----RSWKQDE 271 (282)
T ss_pred CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhh----cccchhh
Confidence 35679999999999 99999999999999999876543 4444443
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=2.7e-07 Score=52.49 Aligned_cols=37 Identities=27% Similarity=0.628 Sum_probs=33.0
Q ss_pred eeeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEE
Q 015363 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWK 142 (408)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd 142 (408)
++..+++|. +.|++++|+|+ +.+|++++.|++|++||
T Consensus 3 ~~~~~~~h~------------~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHS------------SSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSS------------SSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCC------------CcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 466789998 78999999866 77999999999999997
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=4e-05 Score=71.38 Aligned_cols=234 Identities=16% Similarity=0.213 Sum_probs=137.9
Q ss_pred cccceeeecccCcCcccceeecc-ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363 14 PLEWKFSQVFGERTAGEEVQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (408)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (408)
...|+-=+.|.....+....-.+ .|+| |++.+..+|.|+.+|.|.+.+..- ..
T Consensus 3 l~qWrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~s~------------------------~~ 56 (933)
T KOG2114|consen 3 LKQWRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNSSF------------------------QL 56 (933)
T ss_pred hhhcceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecccc------------------------ee
Confidence 34677666666544322111122 4544 567888899999999998888432 23
Q ss_pred eeeeccCCcccccccccccccc-eeEEEEeecCCC-cEEEEEeCCC-----eEEEEEcCCC------cEE---EEeccCC
Q 015363 93 KTEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANS-ALYLLSTNDK-----TIKLWKVQEK------KVK---KVFDWNV 156 (408)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~-v~~v~~~p~~~~-~~l~~~~~d~-----~i~vwd~~~~------~~~---~~~~~~~ 156 (408)
...|+++. .. |..+-. -++ .+|++.+.|+ .+++|+++.- ++. .......
T Consensus 57 ~~~fqa~~------------~siv~~L~~---~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~n 121 (933)
T KOG2114|consen 57 IRGFQAYE------------QSIVQFLYI---LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKN 121 (933)
T ss_pred eehheecc------------hhhhhHhhc---ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCC
Confidence 45677776 44 333332 223 4666666554 5999998732 222 1111111
Q ss_pred CCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccce
Q 015363 157 HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI 236 (408)
Q Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 236 (408)
. .. ..++. .++.+.+-+.+ +.|-.+|.|..+. .+.......+..+......+|
T Consensus 122 p-~~---~~p~s-------~l~Vs~~l~~I------------v~Gf~nG~V~~~~----GDi~RDrgsr~~~~~~~~~pI 174 (933)
T KOG2114|consen 122 P-TN---PSPAS-------SLAVSEDLKTI------------VCGFTNGLVICYK----GDILRDRGSRQDYSHRGKEPI 174 (933)
T ss_pred C-CC---CCcce-------EEEEEccccEE------------EEEecCcEEEEEc----CcchhccccceeeeccCCCCc
Confidence 1 00 11111 46666666666 8888899888754 222111111222234456789
Q ss_pred EEEEeCCCCCE-EEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 237 NSISNNSDGET-FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 237 ~~i~~~~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
+.+++..++.. ++++....|.+|.+........+ +..|...+.|..+++.. ..|++++ +..+.+||....
T Consensus 175 TgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~-------ld~~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 175 TGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKV-------LDNNGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred eeeEEecCCceeEEEEecceeEEEEecCCCcceee-------eccCCccceeeecCCCC-ccEEEec-CceEEEEcCCCc
Confidence 99999988876 44446678999999833312322 56778888999998876 4344443 457999999876
Q ss_pred ceecccccccc-cc
Q 015363 316 ALCDTHSKLFE-EQ 328 (408)
Q Consensus 316 ~~~~~~~~~~~-~~ 328 (408)
+.| ..+. ++
T Consensus 246 ~~c----faf~~g~ 255 (933)
T KOG2114|consen 246 GPC----FAFEVGE 255 (933)
T ss_pred cee----eeecCCC
Confidence 555 5555 44
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.54 E-value=1.9e-05 Score=68.52 Aligned_cols=120 Identities=16% Similarity=0.253 Sum_probs=91.5
Q ss_pred cccccceEEEEeCCCCCEEEEe-cCC-eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeE
Q 015363 230 HAHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (408)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 307 (408)
.++...|+-..+.-+++-++.| .|| .+-+||.+++. ... +...-+.|.++..+|+| ..++.+.....|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr--------~e~~lg~I~av~vs~dG-K~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKR--------IEKDLGNIEAVKVSPDG-KKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEE--------eeCCccceEEEEEcCCC-cEEEEEcCceEE
Confidence 4556678877787777788888 777 99999999443 222 34456779999999999 888888888999
Q ss_pred EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe---CC--CeEEEEECCCCCCce
Q 015363 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY--MTLKLWDINMDSGPV 376 (408)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~---~d--~~v~~wd~~~~~~~~ 376 (408)
.+.|+.++.. +.....+ -+-|+..+|||++++||-+ +. ..|+++|+.. ++..
T Consensus 426 ~vididngnv-----~~idkS~-----------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy 482 (668)
T COG4946 426 WVIDIDNGNV-----RLIDKSE-----------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIY 482 (668)
T ss_pred EEEEecCCCe-----eEecccc-----------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEE
Confidence 9999999865 3333222 2579999999999999987 22 7899999986 4443
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.50 E-value=0.00021 Score=60.10 Aligned_cols=228 Identities=12% Similarity=0.107 Sum_probs=130.4
Q ss_pred cceeEEEEeecCCCcEEEEEeCCC-eEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
.+...++.+|. ....++.+-+-| ...+||..+++....+....... .+. --.|++||+.|.+..+
T Consensus 5 ~RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyG------Hg~fs~dG~~LytTEn 70 (305)
T PF07433_consen 5 ARGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYG------HGVFSPDGRLLYTTEN 70 (305)
T ss_pred ccccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------Eec------CEEEcCCCCEEEEecc
Confidence 34455777663 245677777666 46789999998877665432221 110 3579999998833222
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEec--------CCeEEEEeCCC
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD--------DLRINLWNLEI 263 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------d~~i~iwd~~~ 263 (408)
=.....|.|-+|| +... ...+.. ...|.-....+.+.|||+.|+.+. .|+-++ ++.+
T Consensus 71 -------d~~~g~G~IgVyd-~~~~-----~~ri~E-~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~t 135 (305)
T PF07433_consen 71 -------DYETGRGVIGVYD-AARG-----YRRIGE-FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDT 135 (305)
T ss_pred -------ccCCCcEEEEEEE-CcCC-----cEEEeE-ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chhh
Confidence 1135568999999 4411 111122 245555567788999998887652 133332 3332
Q ss_pred CCceeeEeecCC------Ccc--cCCcCCeEEEEEcCCCCceEEEEeCCC-------eEEEEEcCCCceecccccccccc
Q 015363 264 SNQSFNIVDVKP------ANM--EDLTEVITSAEFHPTHCNMLAYSSSKG-------SIRLIDMRQSALCDTHSKLFEEQ 328 (408)
Q Consensus 264 ~~~~~~~~~~~~------~~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~ 328 (408)
....+..++... ..+ .-|...++.++++++| ..++..-..| .|.+++.... . ..+...
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~p 208 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPAP 208 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccCC
Confidence 232222221111 123 3477789999999999 5555443332 2333333221 1 112111
Q ss_pred cCCCCccccccccceeEEEEEccCCCEEEEeC-C-CeEEEEECCCCCCceeeeeec
Q 015363 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d-~~v~~wd~~~~~~~~~~~~~~ 382 (408)
+ .....-...|-+|++++++.++++.+ - +.+.+||..+ ++.+....-.
T Consensus 209 ~-----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~ 258 (305)
T PF07433_consen 209 E-----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLP 258 (305)
T ss_pred h-----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccC
Confidence 0 11122236789999999999888775 3 9999999998 6776665443
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.4e-05 Score=73.78 Aligned_cols=194 Identities=12% Similarity=0.107 Sum_probs=125.7
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccc
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (408)
...+.++|++++ +++|+-|+-+|.|++++...... ....|.
T Consensus 37 ~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------------~~~~~s------------ 77 (846)
T KOG2066|consen 37 LQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------------TNFDHS------------ 77 (846)
T ss_pred HhhhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------------cccccc------------
Confidence 456788888885 67899999999999999765421 112222
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccC-----CCeee
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-----GGCGE 187 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~l~ 187 (408)
.. +.+|+++++|+.||+|.|-.+-+.+......++... . +++++|+ .+.
T Consensus 78 ~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpi---------k-------sial~Pd~~~~~sk~-- 131 (846)
T KOG2066|consen 78 SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPI---------K-------SIALHPDFSRQQSKQ-- 131 (846)
T ss_pred cc--------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcc---------e-------eEEeccchhhhhhhh--
Confidence 11 456899999999999999999888776666664332 2 5788887 223
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCce
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 267 (408)
+++|+..| +.++. ++ ..+......+....++|.++.|. |+++|-++|-.|++||+......
T Consensus 132 ----------fv~GG~ag-lvL~e--r~----wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l 192 (846)
T KOG2066|consen 132 ----------FVSGGMAG-LVLSE--RN----WLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRL 192 (846)
T ss_pred ----------eeecCcce-EEEeh--hh----hhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEecccccee
Confidence 27788887 66654 11 00111111235566899999995 78999997777999999954433
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
.. ++-.. ...........+.|.++. .|+.| ...+|+|..++.+
T Consensus 193 ~~-i~~p~-~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 193 TN-IPPPS-QSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKKR 235 (846)
T ss_pred ec-cCCCC-CCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEecc
Confidence 33 22111 011112223568898886 56665 4557899888833
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=0.00055 Score=57.63 Aligned_cols=251 Identities=13% Similarity=0.095 Sum_probs=137.2
Q ss_pred eEEEEECC-CCCeEEEeecCCe-EEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363 38 ISAIEFDK-SGDHLATGDRGGR-VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 38 V~~~~~s~-~~~~l~sg~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (408)
...++.+| ++..+|.+.+-|+ ..+||..+++.. ..+ ..| .-..|.+|-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~----~~~--------~a~---~gRHFyGHg--------------- 56 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL----QRL--------WAP---PGRHFYGHG--------------- 56 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee----eEE--------cCC---CCCEEecCE---------------
Confidence 34778888 5677888887775 578998877642 000 000 112355564
Q ss_pred eEEEEeecCCCcEEEEEe-----CCCeEEEEEcC-CCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 116 NKIRWCQSANSALYLLST-----NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~-----~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
.|+ ++|.+|++.- ..|.|-|||.. +-+.+..+..+. ..+..+.+.|||+.|...
T Consensus 57 ---~fs--~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G---------------IGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 57 ---VFS--PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG---------------IGPHELLLMPDGETLVVA 116 (305)
T ss_pred ---EEc--CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC---------------cChhhEEEcCCCCEEEEE
Confidence 675 4588888863 46789999999 333333333221 112246677777655332
Q ss_pred cccccC------ccccCCCCCceeeeceeeecccccccccccee-ec--cccccceEEEEeCCCCCEEEEe-cCC-----
Q 015363 190 FGCASN------DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI-YA--HAHDYHINSISNNSDGETFISA-DDL----- 254 (408)
Q Consensus 190 ~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~i~~~~~~~~l~~~-~d~----- 254 (408)
.|.... .-+-....+.++...| ... +..+.. .+ .-|...++.++++++|..++.. ..+
T Consensus 117 NGGI~Thpd~GR~kLNl~tM~psL~~ld-~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~ 189 (305)
T PF07433_consen 117 NGGIETHPDSGRAKLNLDTMQPSLVYLD-ARS------GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA 189 (305)
T ss_pred cCCCccCcccCceecChhhcCCceEEEe-cCC------CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence 221100 0011112222222222 111 111111 02 3356679999999999887765 332
Q ss_pred --eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceE-EEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363 255 --RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (408)
Q Consensus 255 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (408)
.|-+++.. ..+..+.........-...+-+|++++++ .++ +|+-..+.+.+||..++..+ ....-.
T Consensus 190 ~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~~----~~~~l~--- 258 (305)
T PF07433_consen 190 PPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGGRVAVWDAATGRLL----GSVPLP--- 258 (305)
T ss_pred CCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCCEEEEEECCCCCEe----eccccC---
Confidence 23344333 22333222222223345778999999999 555 55555789999999999664 222222
Q ss_pred CCccccccccceeEEEEEccCCCEEEEeCCCeEEEEE
Q 015363 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD 368 (408)
Q Consensus 332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd 368 (408)
.+..++-.+++ ++++...|.+....
T Consensus 259 -----------D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 259 -----------DACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred -----------ceeeeeecCCc-eEEeCCCccEEEcc
Confidence 35667777666 77776666644433
No 301
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.45 E-value=0.00016 Score=64.47 Aligned_cols=280 Identities=16% Similarity=0.134 Sum_probs=132.4
Q ss_pred ceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCC--Ccccccccc---------cc-----cccCCC----ccceeeee
Q 015363 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG--GQRRDLEMM---------DY-----SMSRHP----EFRYKTEF 96 (408)
Q Consensus 37 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~--~~~~~~~~~---------~~-----~~~~~p----~~~~~~~~ 96 (408)
.|+.+.|+++..-||+|...|.|.||.+..++..+ .....++.. .. .-+..| .+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999999987765422 000111100 00 001111 12222223
Q ss_pred ccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCcee
Q 015363 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (408)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (408)
+... ++|++++.+.- | ++|.|..+|.+.|.|++....+.................+. +
T Consensus 83 ~~~~------------g~vtal~~S~i--G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt-------~ 140 (395)
T PF08596_consen 83 DAKQ------------GPVTALKNSDI--G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT-------S 140 (395)
T ss_dssp ---S-------------SEEEEEE-BT--S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE-------E
T ss_pred eccC------------CcEeEEecCCC--c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee-------E
Confidence 3333 78999999522 4 99999999999999998887766543332100000011111 2
Q ss_pred eEEc-----cCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEE-eCCC------
Q 015363 177 KSYM-----ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS-NNSD------ 244 (408)
Q Consensus 177 ~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~------ 244 (408)
+.|. .|+. ....+++|...|.+..|.++-.............. ..+.+.|..|. ++.+
T Consensus 141 ieF~vm~~~~D~y---------SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 141 IEFSVMTLGGDGY---------SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESAL 210 (395)
T ss_dssp EEEEEEE-TTSSS---------EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B
T ss_pred EEEEEEecCCCcc---------cceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCccc
Confidence 3332 2220 11224788888999988843222222222222211 23444444443 2211
Q ss_pred ---------------CCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc-----CCCCceEEEEeCC
Q 015363 245 ---------------GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSSK 304 (408)
Q Consensus 245 ---------------~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~s~~~d 304 (408)
..+++++.+..++++...+.+...+. + ........+.+- ..+ ..|++-..+
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~ 281 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGG-YCLVCLFNN 281 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETT
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCc-eEEEEEECC
Confidence 12444457788999988855444333 2 111222334442 345 788888999
Q ss_pred CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (408)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~ 369 (408)
|.|++|.+..-+.+ ..+.-+. ......+....++++|..++-.+...+.++.+
T Consensus 282 G~i~i~SLP~Lkei----~~~~l~~--------~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 282 GSIRIYSLPSLKEI----KSVSLPP--------PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp SEEEEEETTT--EE----EEEE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred CcEEEEECCCchHh----hcccCCC--------ccccccccccEECCCCCEEEEeCcccEEEEEE
Confidence 99999999876544 2222211 00123445667899999887665444444443
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=9.2e-05 Score=71.74 Aligned_cols=220 Identities=13% Similarity=0.137 Sum_probs=128.3
Q ss_pred cceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (408)
+.|.++.|..++.-++.+..+|.|.+-|..+... ..-+.. ...|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------eivg~v-----------d~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------EIVGNV-----------DNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------eeeeec-----------cCce
Confidence 5789999999998899999999999988766542 111111 1669
Q ss_pred eEEEEeecCCCcEEEEEeCCCeEEEEEc----CCCcEE--------EEeccCCC--CcccCCC------------CCeE-
Q 015363 116 NKIRWCQSANSALYLLSTNDKTIKLWKV----QEKKVK--------KVFDWNVH--PEKAAGN------------GPIF- 168 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~----~~~~~~--------~~~~~~~~--~~~~~~~------------~~v~- 168 (408)
.+++|+|+ .+.++..+.++++.+-.- -..+.. ........ ..++..+ ....
T Consensus 113 ~aaswS~D--ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~ 190 (1265)
T KOG1920|consen 113 SAASWSPD--EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE 190 (1265)
T ss_pred EEEeecCC--CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccccc
Confidence 99999766 779998888888776532 111111 00000000 0001000 0000
Q ss_pred --eecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC
Q 015363 169 --GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (408)
Q Consensus 169 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (408)
..++..+.+.|--||++.+... +......+.|++|| -. ........ ...+.=.+++|-|.|.
T Consensus 191 ~~~~~~~~~~IsWRgDg~~fAVs~-------~~~~~~~RkirV~d-rE-g~Lns~se-------~~~~l~~~LsWkPsgs 254 (1265)
T KOG1920|consen 191 QIEQDDHKTSISWRGDGEYFAVSF-------VESETGTRKIRVYD-RE-GALNSTSE-------PVEGLQHSLSWKPSGS 254 (1265)
T ss_pred chhhccCCceEEEccCCcEEEEEE-------EeccCCceeEEEec-cc-chhhcccC-------cccccccceeecCCCC
Confidence 1223445688999998762110 01123338999999 21 11111111 1112335789999999
Q ss_pred EEEEe----cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEE---EeCCCeEEEEEcCCC
Q 015363 247 TFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY---SSSKGSIRLIDMRQS 315 (408)
Q Consensus 247 ~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s---~~~dg~i~iwd~~~~ 315 (408)
.+++- +|+.|.+|.-+.-...--. + .++.....+..++|+.++ .+||. ......|++|-+.+.
T Consensus 255 ~iA~iq~~~sd~~IvffErNGL~hg~f~--l---~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFERNGLRHGEFV--L---PFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eEeeeeecCCCCcEEEEecCCccccccc--c---CCcccccchheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence 99974 5778999987622221100 0 123333448999999999 88887 445566999988765
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=1.4e-06 Score=72.13 Aligned_cols=160 Identities=10% Similarity=0.119 Sum_probs=100.2
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccc
Q 015363 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (408)
Q Consensus 119 ~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (408)
+|+-+.-|.. ++.+-+-.|-+-+++++...... . .+.|+ ++.|...+..+
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-s---------ksDVf-------AlQf~~s~nLv------------ 267 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-S---------KSDVF-------ALQFAGSDNLV------------ 267 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccccc-c---------chhHH-------HHHhcccCCee------------
Confidence 6653323433 45566667788888877533221 1 11222 44555555554
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCC
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (408)
+.|..+|.|..+| ++.... ....+... --|+..|+++..-. ++.+|.++ .+|+|++||++..+....+ .
T Consensus 268 ~~GcRngeI~~iD-LR~rnq-G~~~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V-----~ 338 (425)
T KOG2695|consen 268 FNGCRNGEIFVID-LRCRNQ-GNGWCAQR--LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSV-----M 338 (425)
T ss_pred EecccCCcEEEEE-eeeccc-CCCcceEE--EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccce-----e
Confidence 9999999999999 554322 11233333 36788899887765 66777766 8999999999954432211 2
Q ss_pred cccCCcCCeE--EEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 277 NMEDLTEVIT--SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 277 ~~~~~~~~v~--~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
++.+|-..-. -+-.++.. ..+++++.|...+||.++.+.+.
T Consensus 339 qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 339 QYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred eeeccccccccccccccccc-ceEEEccCeeEEEEEecccCcee
Confidence 2566643322 23345555 68888999999999999998664
No 304
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.41 E-value=0.0011 Score=57.85 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=106.7
Q ss_pred EeecCCCcEEEEEe----------CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 120 ~~p~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
++ ++|+.++++. .+..|.+||+.+.+....+.....+...... .+..+.++|||+.+
T Consensus 53 ~s--pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~--------~~~~~~ls~dgk~l--- 119 (352)
T TIGR02658 53 VA--SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT--------YPWMTSLTPDNKTL--- 119 (352)
T ss_pred EC--CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC--------ccceEEECCCCCEE---
Confidence 65 4476666654 5889999999999988877765443211111 12257899999987
Q ss_pred cccccCccccCC--CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCce
Q 015363 190 FGCASNDSSFPP--GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 267 (408)
+.. +.+..|.+.| +...+. ...+... ....-...+ +...++.+.||......+...++.
T Consensus 120 ---------~V~n~~p~~~V~VvD-~~~~kv------v~ei~vp--~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 120 ---------LFYQFSPSPAVGVVD-LEGKAF------VRMMDVP--DCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred ---------EEecCCCCCEEEEEE-CCCCcE------EEEEeCC--CCcEEEEec-CCccEEEeecCceEEEEecCCCce
Confidence 433 3368888888 332111 1111000 001111111 111222223333333322222221
Q ss_pred eeEeecCCCcccCCcCCe-EEEEEcC-CCCceEEEEeCCCeEEEEEcCCCceec-ccccccccccCCCCcccccccccee
Q 015363 268 FNIVDVKPANMEDLTEVI-TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v-~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
. .... .-+......+ ..-.|.+ +| .++..... |.|.+.|+....... .++..+..... +.-+ ..+.+
T Consensus 181 ~-~~~~--~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---~~~w--rP~g~ 250 (352)
T TIGR02658 181 K-IKPT--EVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---ADGW--RPGGW 250 (352)
T ss_pred E-Eeee--eeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeecccccc---cccc--CCCcc
Confidence 1 0000 0011100000 0114456 77 55555444 999999975543211 11111111100 0000 11344
Q ss_pred EEEEEccCCCEEEEeC---------C--CeEEEEECCCCCCceeeeee
Q 015363 345 SDIKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 345 ~~~~~spdg~~l~s~~---------d--~~v~~wd~~~~~~~~~~~~~ 381 (408)
.-++++|+++.|+... + +.|.++|..+ ++.+..+..
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v 297 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL 297 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC
Confidence 4599999999888731 1 5899999998 677777654
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.37 E-value=1.1e-05 Score=66.01 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=77.3
Q ss_pred cceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCceeeEeec-----CC---CcccCCcCCeEEEEEcCCCCceEEEEeC
Q 015363 234 YHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDV-----KP---ANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (408)
Q Consensus 234 ~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~-----~~---~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 303 (408)
.-|++..|+|... .+..+ +.|.|++-|++....+.....+ .+ .-+.+-...|..+.|+++| +++++-+
T Consensus 222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd- 299 (460)
T COG5170 222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD- 299 (460)
T ss_pred HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-
Confidence 3467788888753 34444 8999999999844333221110 00 0122233567889999999 8877643
Q ss_pred CCeEEEEEcCCCceecccccccccccCCC--Ccccccccccee---EEEEEccCCCEEEEeCC-CeEEEEECC
Q 015363 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPG--TRSFFTEIIASI---SDIKFARNGRHILSRDY-MTLKLWDIN 370 (408)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~i---~~~~~spdg~~l~s~~d-~~v~~wd~~ 370 (408)
=-+|+|||.+..+ .|+++...|.... ...++. ...| ..+.||.|.+.+.+|+. +..-++-..
T Consensus 300 yltvkiwDvnm~k---~pikTi~~h~~l~~~l~d~YE--nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 300 YLTVKIWDVNMAK---NPIKTIPMHCDLMDELNDVYE--NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred cceEEEEeccccc---CCceeechHHHHHHHHHhhhh--ccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 4689999999876 3456665553210 001110 1122 35788888888888874 566666543
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=1.3e-05 Score=71.77 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=64.1
Q ss_pred cceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 30 ~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
..+.....|.|++++|+.+.|+.|+.||.|.+||...+.. .+....
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-------------------------~~~ka~--------- 299 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-------------------------LLAKAE--------- 299 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-------------------------eeeeec---------
Confidence 4467888999999999999999999999999999765532 121122
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcE
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV 148 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~ 148 (408)
-.++.++|+|+ |..+++|+..|.+.+||+.-...
T Consensus 300 ---~~P~~iaWHp~--gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 300 ---FIPTLIAWHPD--GAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred ---ccceEEEEcCC--CcEEEEEcCCceEEEEEeecCcc
Confidence 33788999765 88999999999999999975543
No 307
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.32 E-value=0.00023 Score=64.14 Aligned_cols=203 Identities=7% Similarity=0.020 Sum_probs=100.6
Q ss_pred CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCc-------ccCCCCCeEeecCCceeeEEcc-CCCeeecccc------
Q 015363 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-------KAAGNGPIFGSHVSAIPKSYMA-NGGCGERNFG------ 191 (408)
Q Consensus 126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~------ 191 (408)
+..++.++.++.+..||.++++.+.......... .....+.++.......-.++.+ +|+.+-....
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 3467778889999999999988766554432210 0011122222222122223332 3433311100
Q ss_pred --------c-----ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEE
Q 015363 192 --------C-----ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN 257 (408)
Q Consensus 192 --------~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~ 257 (408)
. .....++.++.++.+..+| ....+ ..... . . ....... ..+..++.+ .+|.+.
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d-~~tG~------~~W~~-~-~-~~~~~p~--~~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALD-LRSGR------VLWKR-D-A-SSYQGPA--VDDNRLYVTDADGVVV 292 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEE-CCCCc------EEEee-c-c-CCccCce--EeCCEEEEECCCCeEE
Confidence 0 0112344555677777777 32211 11111 0 0 0111111 235566666 899999
Q ss_pred EEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccc
Q 015363 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (408)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (408)
.+|..+++...+... +.. ....+... .+ ..+++++.+|.|+++|..+++.. ..++.+.
T Consensus 293 ~~d~~tG~~~W~~~~-----~~~--~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~~----~~~~~~~-------- 350 (377)
T TIGR03300 293 ALDRRSGSELWKNDE-----LKY--RQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSFV----ARLKTDG-------- 350 (377)
T ss_pred EEECCCCcEEEcccc-----ccC--CccccCEE--EC-CEEEEEeCCCEEEEEECCCCCEE----EEEEcCC--------
Confidence 999985554433200 111 11122222 24 57888899999999999998765 3333221
Q ss_pred cccccee-EEEEEccCCCEEEEeCCCeEEEE
Q 015363 338 TEIIASI-SDIKFARNGRHILSRDYMTLKLW 367 (408)
Q Consensus 338 ~~h~~~i-~~~~~spdg~~l~s~~d~~v~~w 367 (408)
..+ ....+ .++++++.+.||.|..|
T Consensus 351 ----~~~~~sp~~-~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 351 ----SGIASPPVV-VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ----CccccCCEE-ECCEEEEEeCCceEEEe
Confidence 112 12222 24555555567888776
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.30 E-value=0.001 Score=56.02 Aligned_cols=208 Identities=10% Similarity=0.095 Sum_probs=116.7
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEc-cCCCeeecccccccC
Q 015363 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERNFGCASN 195 (408)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 195 (408)
++.|.+. ++.++++-...+.|..|+..+++.... .... +..+.+. +++..+
T Consensus 4 gp~~d~~-~g~l~~~D~~~~~i~~~~~~~~~~~~~-~~~~-----------------~~G~~~~~~~g~l~--------- 55 (246)
T PF08450_consen 4 GPVWDPR-DGRLYWVDIPGGRIYRVDPDTGEVEVI-DLPG-----------------PNGMAFDRPDGRLY--------- 55 (246)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEE-ESSS-----------------EEEEEEECTTSEEE---------
T ss_pred ceEEECC-CCEEEEEEcCCCEEEEEECCCCeEEEE-ecCC-----------------CceEEEEccCCEEE---------
Confidence 4678542 466777766889999999988865442 2211 1145555 555543
Q ss_pred ccccCCCCCceeeeceeeeccccccccccceeeccc-cccceEEEEeCCCCCEEEEe-cC--------CeEEEEeCCCCC
Q 015363 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DD--------LRINLWNLEISN 265 (408)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~d--------~~i~iwd~~~~~ 265 (408)
.+...+. .++| ....+..... ...... .....+.++++|+|++.++. .. +.|..++.. .
T Consensus 56 ----v~~~~~~-~~~d-~~~g~~~~~~---~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~ 124 (246)
T PF08450_consen 56 ----VADSGGI-AVVD-PDTGKVTVLA---DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--G 124 (246)
T ss_dssp ----EEETTCE-EEEE-TTTTEEEEEE---EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--S
T ss_pred ----EEEcCce-EEEe-cCCCcEEEEe---eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--C
Confidence 3333332 3324 2221111000 000011 34678899999999988874 22 456666665 2
Q ss_pred ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeE
Q 015363 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (408)
+.... ...-.....|+|+|++..++++-+..+.|..+++..........+.+.... .-.+..-
T Consensus 125 ~~~~~--------~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~g~pD 187 (246)
T PF08450_consen 125 KVTVV--------ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP---------GGPGYPD 187 (246)
T ss_dssp EEEEE--------EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S---------SSSCEEE
T ss_pred eEEEE--------ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC---------CCCcCCC
Confidence 32222 112344689999999933445667788999999874332001112221110 0013477
Q ss_pred EEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeeec
Q 015363 346 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 346 ~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
.+++..+|++.++. ..+.|.+++-+ |+.+..+...
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p 223 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELP 223 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-S
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCC
Confidence 89999999887776 45899999985 7888888776
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.00021 Score=60.88 Aligned_cols=222 Identities=14% Similarity=0.109 Sum_probs=116.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..|.+++|+|..+| ++..++.+..|+|.|+++..+......+. .++ +++|.-|....
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a~~---------~~w-------SC~wDlde~h~------ 250 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIAYN---------QIW-------SCCWDLDERHV------ 250 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheeccC---------Cce-------eeeeccCCcce------
Confidence 66999999988665 88899999999999999987766555432 344 56776665432
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEE------eCCCCCEEEEecCCeEEEEeCCCCCc
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS------NNSDGETFISADDLRINLWNLEISNQ 266 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~------~~~~~~~l~~~~d~~i~iwd~~~~~~ 266 (408)
++.|..+|.|.+|| ++..+.......- .....+|..++ ..+.+.+|+... -.+..|.+.....
T Consensus 251 -----IYaGl~nG~VlvyD-~R~~~~~~~e~~a----~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~ 319 (463)
T KOG1645|consen 251 -----IYAGLQNGMVLVYD-MRQPEGPLMELVA----NVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAE 319 (463)
T ss_pred -----eEEeccCceEEEEE-ccCCCchHhhhhh----hhccCcceeecccCccccccccceEEeee-hhhhhhhhhcccc
Confidence 48999999999999 6554432111000 01112333332 233344444331 1245666553322
Q ss_pred eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC---eEEE----EEcCCCceecccccccccccCCCCcccccc
Q 015363 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRL----IDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~i----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (408)
....+ .-.+..+.+.++++.+....+|++.-.+. +++. -|.+.|..+-..-....+.... .-
T Consensus 320 ~~p~v-----lele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~------kl 388 (463)
T KOG1645|consen 320 CLPCV-----LELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQT------KL 388 (463)
T ss_pred CCCcc-----cccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccc------cc
Confidence 21110 01122455667777775535555554321 1111 1112221110000111011000 00
Q ss_pred ccceeEEEEEccCCCEEEEe-CC-CeEEEEECCCCCCceeeeeec
Q 015363 340 IIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 340 h~~~i~~~~~spdg~~l~s~-~d-~~v~~wd~~~~~~~~~~~~~~ 382 (408)
..-..+.=.++.++|+.- ++ +.+.+||..+ ...++++.-.
T Consensus 389 --~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s-~evvQ~l~~~ 430 (463)
T KOG1645|consen 389 --STTQAIRAVEDNNYIVVVGDSTNELILQDPHS-FEVVQTLALS 430 (463)
T ss_pred --ccccceeccccccEEEEecCCcceeEEeccch-hheeeecccC
Confidence 001112223566777654 44 9999999998 6888888765
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.3e-05 Score=69.01 Aligned_cols=226 Identities=9% Similarity=0.000 Sum_probs=132.5
Q ss_pred cccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEecc-CCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW-NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
|.+.|+.+.-.. .+++.+++.||.++.|.-..-.-...... ..+ .+.+. .++.+-+|...
T Consensus 8 hrd~i~hv~~tk---a~fiiqASlDGh~KFWkKs~isGvEfVKhFraH------L~~I~-------sl~~S~dg~L~--- 68 (558)
T KOG0882|consen 8 HRDVITHVFPTK---AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAH------LGVIL-------SLAVSYDGWLF--- 68 (558)
T ss_pred ccceeeeEeeeh---hheEEeeecchhhhhcCCCCccceeehhhhHHH------HHHHH-------hhhccccceeE---
Confidence 335577666532 35999999999999998665222222111 111 11111 34444555443
Q ss_pred cccccCccccCCCC-CceeeeceeeeccccccccccceeeccccccceEEEEeCCCC--CEEEEe--cCCeEEEEeCCCC
Q 015363 190 FGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA--DDLRINLWNLEIS 264 (408)
Q Consensus 190 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~--~d~~i~iwd~~~~ 264 (408)
.+... |..++++| +.+.+.....+. .+++ +.+. ...++.. ..++.+ .++.+.++|-...
T Consensus 69 ---------~Sv~d~Dhs~KvfD-vEn~DminmiKL--~~lP---g~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d 132 (558)
T KOG0882|consen 69 ---------RSVEDPDHSVKVFD-VENFDMINMIKL--VDLP---GFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGD 132 (558)
T ss_pred ---------eeccCcccceeEEE-eeccchhhhccc--ccCC---CceE-EecCCCCeeeeEEeecccCCCcEEECCcCC
Confidence 66555 89999999 655444211110 0011 2222 1122321 245555 7999999998844
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC-CceecccccccccccCCCCccccccccce
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (408)
....... -.-|..+|..+.++|-+ ..+++....|.|.-|.... .+.....+..-..|+ .....+......
T Consensus 133 ~~q~~~f------kklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e--TdLy~f~K~Kt~ 203 (558)
T KOG0882|consen 133 FCQDGYF------KKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE--TDLYGFPKAKTE 203 (558)
T ss_pred cCcccee------cccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCcccccccccccc--chhhcccccccC
Confidence 4222211 34588999999999999 8888888899999998873 110000000000000 001112223456
Q ss_pred eEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceeeeee
Q 015363 344 ISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 344 i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
..++.|+|+|..+.+- .|..|+++++++ |+.++.+..
T Consensus 204 pts~Efsp~g~qistl~~DrkVR~F~~Kt-GklvqeiDE 241 (558)
T KOG0882|consen 204 PTSFEFSPDGAQISTLNPDRKVRGFVFKT-GKLVQEIDE 241 (558)
T ss_pred ccceEEccccCcccccCcccEEEEEEecc-chhhhhhhc
Confidence 7899999999999986 579999999998 787776654
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=7.2e-06 Score=73.32 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=60.3
Q ss_pred CCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363 280 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (408)
Q Consensus 280 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~ 359 (408)
.....+.+++++|+. ..|+.|+.||.|.+||...+.. .+... .-.++.++|+|+|.++++|
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t------~~~ka------------~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVT------LLAKA------------EFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCee------eeeee------------cccceEEEEcCCCcEEEEE
Confidence 356778999999999 9999999999999999987632 11111 1357889999999999999
Q ss_pred CC-CeEEEEECCC
Q 015363 360 DY-MTLKLWDINM 371 (408)
Q Consensus 360 ~d-~~v~~wd~~~ 371 (408)
++ |.+.+||+..
T Consensus 318 s~qGelQ~FD~AL 330 (545)
T PF11768_consen 318 SEQGELQCFDMAL 330 (545)
T ss_pred cCCceEEEEEeec
Confidence 87 9999999976
No 312
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=6.7e-05 Score=69.19 Aligned_cols=222 Identities=10% Similarity=0.095 Sum_probs=121.6
Q ss_pred eeccceEEEEECCC------C------CeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCC
Q 015363 33 QEVDIISAIEFDKS------G------DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (408)
Q Consensus 33 ~h~~~V~~~~~s~~------~------~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 100 (408)
.|...|+.+.|.|- + -+||++...|.|.|||...... ...++.|.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----------------------~~~l~~~~ 109 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----------------------INWLSHSN 109 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----------------------hhhhcCCC
Confidence 47899999999872 1 2688888999999999876653 23456666
Q ss_pred cccccccccccccceeEEEEeecCCCc--EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363 101 PEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (408)
Q Consensus 101 ~~~~~~~~~~~~~~v~~v~~~p~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (408)
++|.+++|.|..+.+ .|++-..-.++.+|+..+|+........... .. ++.
T Consensus 110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i---------Ls------~f~ 162 (1062)
T KOG1912|consen 110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI---------LS------CFR 162 (1062)
T ss_pred ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc---------ee------eee
Confidence 779999999876644 5666677789999999999876554432211 10 122
Q ss_pred EccCC-CeeecccccccC----ccccCCCCCceeeeceeeecc--ccc-----cccccceeeccccc---cceEEEEeCC
Q 015363 179 YMANG-GCGERNFGCASN----DSSFPPGGVSSLRLPVVVTSQ--ETN-----LVAGCRRIYAHAHD---YHINSISNNS 243 (408)
Q Consensus 179 ~~~~~-~~l~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~--~~~-----~~~~~~~~~~~~~~---~~v~~i~~~~ 243 (408)
+.|-. +.+ ++.+.... .++...-.++..+.+. +... +.. .......+...... ...-.++|+|
T Consensus 163 ~DPfd~rh~-~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 163 VDPFDSRHF-CVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eCCCCcceE-EEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 22211 111 00000000 0011111122222222 1111 000 00000000000000 0012356777
Q ss_pred CC-CEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC-ceEEEEeCCCeEEEEEcCC
Q 015363 244 DG-ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQ 314 (408)
Q Consensus 244 ~~-~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~ 314 (408)
.- +.++......+.++|++ -..++..+.+ ..+.+.-+.+-|++. ..|.+...||.+.+|-.+.
T Consensus 241 ~~rn~lfi~~prellv~dle-~~~~l~vvpi-------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLE-YECCLAVVPI-------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhceEEEEeccceEEEcch-hhceeEEEEe-------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 65 44455577889999999 5555555432 234455677777762 4678888899999997654
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=1.3e-06 Score=81.11 Aligned_cols=217 Identities=17% Similarity=0.267 Sum_probs=133.8
Q ss_pred ceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccc
Q 015363 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (408)
Q Consensus 31 ~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (408)
+..|...-+|++|+-+.++|+.|+..|.|+++++.++.. .....+|.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~---------- 1143 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQ---------- 1143 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------------cccccccc----------
Confidence 346788899999999999999999999999999998864 24567777
Q ss_pred cccceeEEEEeecCCCcEEEEEe--CCCeEEEEEcCC-CcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 111 IEEKINKIRWCQSANSALYLLST--NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 111 ~~~~v~~v~~~p~~~~~~l~~~~--~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
+.|+-+.-+ .+|+.+++.+ ..--..+|++.+ +.....+.. .. ++.|+...+.-
T Consensus 1144 --SavT~vePs--~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e--d~-----------------~vkFsn~~q~r- 1199 (1516)
T KOG1832|consen 1144 --SAVTLVEPS--VDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE--DK-----------------AVKFSNSLQFR- 1199 (1516)
T ss_pred --ccccccccc--CCcceeeeeccccCchHHHhccccccCccccccc--cc-----------------eeehhhhHHHH-
Confidence 778887764 5577766654 233578999875 222222221 11 34555443332
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeec---cccccceEEEEeCCCCCEEEEecCCeEEEEeCCCC
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA---HAHDYHINSISNNSDGETFISADDLRINLWNLEIS 264 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~ 264 (408)
+.|.......+|| +... .+..+++ .+....-+.+.|+|+..+++ .|| .+||++..
T Consensus 1200 -----------~~gt~~d~a~~YD-vqT~------~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1200 -----------ALGTEADDALLYD-VQTC------SPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIP 1257 (1516)
T ss_pred -----------HhcccccceEEEe-cccC------cHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccH
Confidence 5566667788888 4321 1111111 11122236788999987766 444 48999944
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
+.+.. +...... -.-.|+|.| .-++.-+ .|||+++.+.+ +..+.- .-
T Consensus 1258 -~aIh~-------FD~ft~~-~~G~FHP~g-~eVIINS-----EIwD~RTF~lL----h~VP~L--------------dq 1304 (1516)
T KOG1832|consen 1258 -EAIHR-------FDQFTDY-GGGGFHPSG-NEVIINS-----EIWDMRTFKLL----HSVPSL--------------DQ 1304 (1516)
T ss_pred -HHHhh-------hhhheec-ccccccCCC-ceEEeec-----hhhhhHHHHHH----hcCccc--------------cc
Confidence 43332 2211111 234799999 6565544 48999998654 333222 12
Q ss_pred EEEEEccCCCEEEEe
Q 015363 345 SDIKFARNGRHILSR 359 (408)
Q Consensus 345 ~~~~~spdg~~l~s~ 359 (408)
..+.|+..|..+++.
T Consensus 1305 c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eEEEeccCccchhhh
Confidence 456787777766653
No 314
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.00099 Score=55.15 Aligned_cols=218 Identities=11% Similarity=0.153 Sum_probs=108.9
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..+..++|.|+ ++.++++....+.|...+++ ++.+......... -.- .+++..++.++
T Consensus 22 ~e~SGLTy~pd-~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~-------D~E-------gI~y~g~~~~v------ 79 (248)
T PF06977_consen 22 DELSGLTYNPD-TGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFG-------DYE-------GITYLGNGRYV------ 79 (248)
T ss_dssp S-EEEEEEETT-TTEEEEEETTTTEEEEEETT---EEEEEE-SS-S-------SEE-------EEEE-STTEEE------
T ss_pred CCccccEEcCC-CCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCC-------Cce-------eEEEECCCEEE------
Confidence 45999999764 24577777888999888875 6666665553211 111 56777777665
Q ss_pred ccCccccCCCCCceeeeceeeeccccc-cccc--ccee-eccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC--CC
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETN-LVAG--CRRI-YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SN 265 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~--~~ 265 (408)
++...++.+.+++ +...... .... .... +...++..+-.++|+|.++.|+.+ ...-..+|.++. ..
T Consensus 80 ------l~~Er~~~L~~~~-~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~ 152 (248)
T PF06977_consen 80 ------LSEERDQRLYIFT-IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG 152 (248)
T ss_dssp ------EEETTTTEEEEEE-E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S
T ss_pred ------EEEcCCCcEEEEE-EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc
Confidence 5555677777766 4221111 1111 0111 112355678999999998877777 666666776653 12
Q ss_pred ceeeEeecCC-CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCcccccccccee
Q 015363 266 QSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
.......... .........+.+++++|....+++....+..|..+| ..|+.+. ...+.... .-+.......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~--~~~L~~g~-----~gl~~~~~Qp 224 (248)
T PF06977_consen 153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVS--SLSLDRGF-----HGLSKDIPQP 224 (248)
T ss_dssp S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEE--EEE-STTG-----GG-SS---SE
T ss_pred cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEE--EEEeCCcc-----cCcccccCCc
Confidence 2222111100 001122344788999998767888888889999999 4554331 01111100 0000001246
Q ss_pred EEEEEccCCCEEEEeCCCeEEEE
Q 015363 345 SDIKFARNGRHILSRDYMTLKLW 367 (408)
Q Consensus 345 ~~~~~spdg~~l~s~~d~~v~~w 367 (408)
-.|+|.++|++.+++.-+..+.|
T Consensus 225 EGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT--EEEEETTTEEEEE
T ss_pred cEEEECCCCCEEEEcCCceEEEe
Confidence 78999999988777765655554
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.19 E-value=0.00032 Score=68.14 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=102.7
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCcc---ceeeeeccCCcccccc-----
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF---RYKTEFQSHEPEFDYL----- 106 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~h~~~~~~~----- 106 (408)
.+.|.+++||||++.++..+..+++.+-.. +-.. ...++++.......-+++. +..+.|+|..+....-
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~--i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ 185 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTK-DFEP--IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEK 185 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEec-cccc--hhccccccccccccccceecccccceeeecchhhhcccccccc
Confidence 568999999999999999988888865443 1111 1111221111100111111 1111233222100000
Q ss_pred -c---ccccccceeEEEEeecCCCcEEEEEe----CC-CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceee
Q 015363 107 -K---SLEIEEKINKIRWCQSANSALYLLST----ND-KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (408)
Q Consensus 107 -~---~~~~~~~v~~v~~~p~~~~~~l~~~~----~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (408)
+ ..+..+.=+.|.| ..||++||+.. .+ +.|++||.+ +....+...... ...++
T Consensus 186 ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~---------------l~~~L 247 (1265)
T KOG1920|consen 186 EKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG---------------LQHSL 247 (1265)
T ss_pred cccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccc---------------cccce
Confidence 0 0012233456899 67798998842 34 899999987 433222111110 01168
Q ss_pred EEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEE---e-cC
Q 015363 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS---A-DD 253 (408)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~---~-~d 253 (408)
+|-|.|..+++++.. ..++.|.++. -.+.. .+...-.+ ......+..++|+.++.+||+ . ..
T Consensus 248 sWkPsgs~iA~iq~~---------~sd~~IvffE-rNGL~---hg~f~l~~-p~de~~ve~L~Wns~sdiLAv~~~~~e~ 313 (1265)
T KOG1920|consen 248 SWKPSGSLIAAIQCK---------TSDSDIVFFE-RNGLR---HGEFVLPF-PLDEKEVEELAWNSNSDILAVVTSNLEN 313 (1265)
T ss_pred eecCCCCeEeeeeec---------CCCCcEEEEe-cCCcc---ccccccCC-cccccchheeeecCCCCceeeeeccccc
Confidence 999999887544332 2334666665 22211 11111111 223344889999999999997 3 45
Q ss_pred CeEEEEeCCC
Q 015363 254 LRINLWNLEI 263 (408)
Q Consensus 254 ~~i~iwd~~~ 263 (408)
..|++|-+.+
T Consensus 314 ~~v~lwt~~N 323 (1265)
T KOG1920|consen 314 SLVQLWTTGN 323 (1265)
T ss_pred ceEEEEEecC
Confidence 5699998874
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00024 Score=66.45 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=96.8
Q ss_pred eeeeceeeeccccccccccc---eeec---cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC--CCceeeEeecCCC
Q 015363 206 SLRLPVVVTSQETNLVAGCR---RIYA---HAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKPA 276 (408)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~ 276 (408)
.+++|+ +...+......|. +.+. .....++.+++++.+-..+|+| .+|.|.++.=+- .+.....+
T Consensus 93 llkiw~-lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~----- 166 (933)
T KOG2114|consen 93 LLKIWD-LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY----- 166 (933)
T ss_pred EEEEec-ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-----
Confidence 589999 7665544434444 2221 1235678899999999999999 999999884321 11111111
Q ss_pred cccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEE
Q 015363 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (408)
Q Consensus 277 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l 356 (408)
......+|+.+.+..++ ..++.......|.+|.+..... ..+.+..+ .....|.+|++....+
T Consensus 167 -~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y~l~gr~p---~~~~ld~~------------G~~lnCss~~~~t~qf 229 (933)
T KOG2114|consen 167 -SHRGKEPITGLALRSDG-KSVLFVATTEQVMLYSLSGRTP---SLKVLDNN------------GISLNCSSFSDGTYQF 229 (933)
T ss_pred -eccCCCCceeeEEecCC-ceeEEEEecceeEEEEecCCCc---ceeeeccC------------CccceeeecCCCCccE
Confidence 22346889999999998 4423333456799999884320 11223333 4678899998755546
Q ss_pred EEeCCCeEEEEECCCCCCceeeee-ecc
Q 015363 357 LSRDYMTLKLWDINMDSGPVATFQ-VHE 383 (408)
Q Consensus 357 ~s~~d~~v~~wd~~~~~~~~~~~~-~~~ 383 (408)
+++.+..+.+|+.+. ..+-.+|. +|.
T Consensus 230 Ica~~e~l~fY~sd~-~~~cfaf~~g~k 256 (933)
T KOG2114|consen 230 ICAGSEFLYFYDSDG-RGPCFAFEVGEK 256 (933)
T ss_pred EEecCceEEEEcCCC-cceeeeecCCCe
Confidence 666666999999985 34444444 443
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.15 E-value=0.0022 Score=58.16 Aligned_cols=132 Identities=8% Similarity=-0.008 Sum_probs=74.3
Q ss_pred CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccc
Q 015363 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (408)
Q Consensus 246 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 324 (408)
..++.+ .++.+..+|..+++...+. + +.. ...+.. .+ ..++.++.+|.+..+|..+++..-+. ..
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~-~-----~~~----~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~-~~ 322 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKR-E-----YGS----VNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQ-SD 322 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEee-c-----CCC----ccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcc-cc
Confidence 344444 7899999999866554432 0 111 112222 34 46667778999999999988653210 00
Q ss_pred cccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeecee
Q 015363 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIH 404 (408)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 404 (408)
+ .. ......... ++.+++...+|.|.+.|.++ |+.+...+........-....++.++..++..
T Consensus 323 ~-~~-------------~~~~sp~v~-~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G 386 (394)
T PRK11138 323 L-LH-------------RLLTAPVLY-NGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFLSEPVVADDKLLIQARDG 386 (394)
T ss_pred c-CC-------------CcccCCEEE-CCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcceeCCEEECCEEEEEeCCc
Confidence 0 00 011111121 44444444579999999997 78877766533222222224566777777777
Q ss_pred eec
Q 015363 405 TLY 407 (408)
Q Consensus 405 ~~~ 407 (408)
.||
T Consensus 387 ~l~ 389 (394)
T PRK11138 387 TVY 389 (394)
T ss_pred eEE
Confidence 776
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.15 E-value=4.8e-05 Score=71.38 Aligned_cols=184 Identities=15% Similarity=0.150 Sum_probs=122.0
Q ss_pred CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (408)
Q Consensus 126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (408)
++.++-|+....+..+|+++.+..+........ ..-.-.+++.+ ++|...|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-----------------v~imR~Nnr~l------------f~G~t~G 197 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-----------------VTIMRYNNRNL------------FCGDTRG 197 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCc-----------------eEEEEecCcEE------------Eeecccc
Confidence 446777887778888898887766655443211 12233445555 9999999
Q ss_pred eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--c--------CCeEEEEeCCCCCceeeEeecCC
Q 015363 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVKP 275 (408)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--------d~~i~iwd~~~~~~~~~~~~~~~ 275 (408)
+|.+-| ... -+.++.+ .+|.+.|..+.. .|+.|+++ + |.-|+|||++..+...-
T Consensus 198 ~V~LrD-~~s------~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P------ 261 (1118)
T KOG1275|consen 198 TVFLRD-PNS------FETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP------ 261 (1118)
T ss_pred eEEeec-CCc------Cceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC------
Confidence 999877 433 2334444 889988876554 68888874 2 45689999995543321
Q ss_pred CcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (408)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~ 355 (408)
+.-+.++ .-+.|.|.-+..+++++..|...+-|..+...- +...+.-+.. ++.+..+++|++|..
T Consensus 262 --I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~----------~s~i~~fDiSsn~~a 326 (1118)
T KOG1275|consen 262 --IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPN----------GSGISAFDISSNGDA 326 (1118)
T ss_pred --cccccCc-hhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccC----------CCcceeEEecCCCce
Confidence 1222222 457899988788999999999999884432210 0122221211 245999999999999
Q ss_pred EEEeC-CCeEEEEEC
Q 015363 356 ILSRD-YMTLKLWDI 369 (408)
Q Consensus 356 l~s~~-d~~v~~wd~ 369 (408)
|+.|+ +|.|.+|.-
T Consensus 327 lafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccCcEeeecC
Confidence 99996 699999973
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.06 E-value=3.2e-06 Score=75.88 Aligned_cols=211 Identities=14% Similarity=0.178 Sum_probs=128.6
Q ss_pred cceEEEEECCC--CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 36 DIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 36 ~~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-.+.|+++.-+ ..+++.|..+|.|.|-........ -.....+|. .
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------------s~E~tp~~a------------r 103 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------------SAEVTPGYA------------R 103 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------------cceeccccc------------c
Confidence 34677777654 358999999999999887654320 000112232 5
Q ss_pred ceeEEEEeecCCCcEEEEEe----CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 114 KINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
..++++|.+- |.+.||+|- .|..+.|||+.++-....-... +.. + ....-..++|..+.+.+
T Consensus 104 ~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~-----fs~-~----~l~gqns~cwlrd~klv--- 169 (783)
T KOG1008|consen 104 PCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL-----FSS-S----TLDGQNSVCWLRDTKLV--- 169 (783)
T ss_pred cccccccccc-cHHHHHhhhhhhcccCCccceecccccCCCccccc-----ccc-c----cccCccccccccCcchh---
Confidence 6889999864 445677663 5678999999876321111110 000 0 00111146777777766
Q ss_pred cccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-CCCEEEEecCCeEEEEe-CCCCCce
Q 015363 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISADDLRINLWN-LEISNQS 267 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~d~~i~iwd-~~~~~~~ 267 (408)
.+|...+.++++| ++.... .. ..-....+..+.++| .++++++-.|+.|.+|| .+.-+..
T Consensus 170 ---------laGm~sr~~~ifd-lRqs~~-------~~-~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienp 231 (783)
T KOG1008|consen 170 ---------LAGMTSRSVHIFD-LRQSLD-------SV-SSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENP 231 (783)
T ss_pred ---------hcccccchhhhhh-hhhhhh-------hh-hhhhhhhcccceecCCCCCceeccccCceeeccchhhhccH
Confidence 8888889999998 432111 00 012224567788898 77888877899999999 4433333
Q ss_pred eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-CeEEEEEcCC
Q 015363 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQ 314 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~ 314 (408)
+..+.- .-......+..++|.|..+.++++...| ++|++||+..
T Consensus 232 l~~i~~---~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 232 LQIILR---NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHHHhh---CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 322110 0111123588999999876677777765 7899999864
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.01 E-value=0.0038 Score=52.19 Aligned_cols=194 Identities=12% Similarity=0.069 Sum_probs=95.4
Q ss_pred CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCc
Q 015363 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (408)
Q Consensus 126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (408)
+..+++++.++.+..||..+++............. .....+..+ +.+..++
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-----------------~~~~~~~~v------------~v~~~~~ 86 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-----------------APVVDGGRV------------YVGTSDG 86 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-----------------GEEEETTEE------------EEEETTS
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-----------------eeeeccccc------------cccccee
Confidence 45788889999999999999998877766332110 001111221 3333445
Q ss_pred eeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCC---
Q 015363 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL--- 281 (408)
Q Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--- 281 (408)
.+..+| ....+.. ............ .........++..++.+ .++.|..+|.++++...+. .........+
T Consensus 87 ~l~~~d-~~tG~~~--W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 87 SLYALD-AKTGKVL--WSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISS 161 (238)
T ss_dssp EEEEEE-TTTSCEE--EEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEE
T ss_pred eeEecc-cCCccee--eeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceee
Confidence 555555 2221111 000000000000 01111122236777777 7999999999955544332 2211000000
Q ss_pred cCCeEEEEEcCCCCceEEEEeCCCe-EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC
Q 015363 282 TEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (408)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~ 360 (408)
...+..-....++ .+..++.++. +.+ |+.+++.. +.... ..+..+ ..+++..|+.++
T Consensus 162 ~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~~------w~~~~------------~~~~~~-~~~~~~~l~~~~ 219 (238)
T PF13360_consen 162 FSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEKL------WSKPI------------SGIYSL-PSVDGGTLYVTS 219 (238)
T ss_dssp ETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEEE------EEECS------------S-ECEC-EECCCTEEEEEE
T ss_pred ecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCEE------EEecC------------CCccCC-ceeeCCEEEEEe
Confidence 0111222222244 4555566664 555 99998632 21110 112221 345667777664
Q ss_pred -CCeEEEEECCCCCCce
Q 015363 361 -YMTLKLWDINMDSGPV 376 (408)
Q Consensus 361 -d~~v~~wd~~~~~~~~ 376 (408)
++.|..||+++ |+.+
T Consensus 220 ~~~~l~~~d~~t-G~~~ 235 (238)
T PF13360_consen 220 SDGRLYALDLKT-GKVV 235 (238)
T ss_dssp TTTEEEEEETTT-TEEE
T ss_pred CCCEEEEEECCC-CCEE
Confidence 79999999998 5544
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=5.8e-05 Score=68.88 Aligned_cols=120 Identities=10% Similarity=0.132 Sum_probs=86.5
Q ss_pred cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
..+.--+++..+++++.| +-|.+++|+-..+..... ...+..+.+..+..+++. .++|+|+..|.|.++.+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQL 105 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-------cccCccceEEEEEecchh-HhhhhhcCCceEEeehh
Confidence 445445667788999999 899999999874332221 123345556778888888 89999999999999988
Q ss_pred CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (408)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~ 371 (408)
.....- . ..+..+. -..|...|++++|++|+..|++|++ |+|.+-.++.
T Consensus 106 ~~~~p~--~-~~~~t~~-------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 106 NKELPR--D-LDYVTPC-------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hccCCC--c-ceeeccc-------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 764221 1 1111111 1236789999999999999999987 9999998876
No 322
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.00051 Score=63.65 Aligned_cols=250 Identities=11% Similarity=0.096 Sum_probs=146.0
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
-.++.|+|+ | +||.|+. ..|.+-|..+-+.++.++.+... |. .+.|.|....-..+.-...
T Consensus 18 ~~A~Dw~~~--G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~--------V~-------~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 18 RNAADWSPS--G-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSA--------VT-------SVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred ccccccCcc--c-eEEEecC-ceEEEEehhhhhhhhccccCccc--------ee-------EEEeccCCCchhccCcccc
Confidence 567889765 5 7777654 57888898888888877776532 32 5677776544333332334
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC---CCC-EEEEe-cCCeEEEEeCCCCCceee
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGE-TFISA-DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~-~l~~~-~d~~i~iwd~~~~~~~~~ 269 (408)
...++++...|.|.+|| +... ..+.. +..|...+..++|-+ +.+ .|++- ....+.+|+..++++..+
T Consensus 79 ~lliAsaD~~GrIil~d-~~~~------s~~~~-l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVD-FVLA------SVINW-LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred ceeEEeccccCcEEEEE-ehhh------hhhhh-hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence 45678899999999999 3221 11111 366677788888765 343 34444 789999999997776654
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc---cCCC-Cc-ccc--cccc-
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ---EAPG-TR-SFF--TEII- 341 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~-~~-~~~--~~h~- 341 (408)
.........|+.+.|..++.+..-+..|.+.+-+.-..+.-+.+.+.++-. ..+. .+ .+. ..++
T Consensus 151 --------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 151 --------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred --------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 233345567899999887777777778888777654332221111222111 0000 00 000 0000
Q ss_pred --------ceeEEEEEccCCCEEEE-eCCCeEEEEECCCCCCceeeeeeccc-----------ccceEEecCCCeeeee
Q 015363 342 --------ASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEH-----------LRPKVMHSSKNYFMGL 400 (408)
Q Consensus 342 --------~~i~~~~~spdg~~l~s-~~d~~v~~wd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 400 (408)
-....++|+|.-+.++- .-...+.++|++- ..++.+..-..+ .+..+.+++.+.++.+
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 01224577886554443 4457899999986 466655544433 2445555555555544
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=1.4e-05 Score=74.59 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=84.2
Q ss_pred cccccceEEEEeCCCCCEEEEe---cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363 230 HAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (408)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 306 (408)
.+|...|+.+.-+.+|..+.+. +.--..+|+.......... +. .-.++.|+..- +.-+.|+....
T Consensus 1140 ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs-------f~----ed~~vkFsn~~-q~r~~gt~~d~ 1207 (1516)
T KOG1832|consen 1140 NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHS-------FD----EDKAVKFSNSL-QFRALGTEADD 1207 (1516)
T ss_pred cccccccccccccCCcceeeeeccccCchHHHhccccccCcccc-------cc----ccceeehhhhH-HHHHhcccccc
Confidence 6788888888888888877765 3346789999854433322 22 23578898876 55566666678
Q ss_pred EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeeccccc
Q 015363 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR 386 (408)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~ 386 (408)
..+||+.++..+... +.+... .+-.-+.+.|+|+..+|+- || .+||++.. +.++.|.......
T Consensus 1208 a~~YDvqT~~~l~ty---lt~~~~---------~~y~~n~a~FsP~D~LIln--dG--vLWDvR~~-~aIh~FD~ft~~~ 1270 (1516)
T KOG1832|consen 1208 ALLYDVQTCSPLQTY---LTDTVT---------SSYSNNLAHFSPCDTLILN--DG--VLWDVRIP-EAIHRFDQFTDYG 1270 (1516)
T ss_pred eEEEecccCcHHHHh---cCcchh---------hhhhccccccCCCcceEee--Cc--eeeeeccH-HHHhhhhhheecc
Confidence 999999999766321 222110 0112256778887776652 22 36888763 5566555544333
Q ss_pred ceEEecCCCeee
Q 015363 387 PKVMHSSKNYFM 398 (408)
Q Consensus 387 ~~~~~~~~~~~~ 398 (408)
....+++.++++
T Consensus 1271 ~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1271 GGGFHPSGNEVI 1282 (1516)
T ss_pred cccccCCCceEE
Confidence 344444444443
No 324
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0014 Score=59.26 Aligned_cols=202 Identities=15% Similarity=0.144 Sum_probs=112.7
Q ss_pred cceeEEEEeecCCCcEEEEEe---CC-CeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeec
Q 015363 113 EKINKIRWCQSANSALYLLST---ND-KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (408)
..+..-+|+|+ +..++..+ .. ..+.++++.+++...+........ ...|+|||+.+
T Consensus 193 ~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~----------------~P~fspDG~~l-- 252 (425)
T COG0823 193 SLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG----------------APAFSPDGSKL-- 252 (425)
T ss_pred cceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccceeeccCCccC----------------CccCCCCCCEE--
Confidence 44677788765 55554442 33 469999999988777766543321 46899999887
Q ss_pred ccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCe--EEEEeCCCC
Q 015363 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR--INLWNLEIS 264 (408)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~--i~iwd~~~~ 264 (408)
+++...++...+|- ..- .... ...+ ....+.-..-.|+|||+.++-. ..|. |.+++.+.
T Consensus 253 ---------~f~~~rdg~~~iy~-~dl-~~~~----~~~L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g- 315 (425)
T COG0823 253 ---------AFSSSRDGSPDIYL-MDL-DGKN----LPRL-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG- 315 (425)
T ss_pred ---------EEEECCCCCccEEE-EcC-CCCc----ceec-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC-
Confidence 57777777766654 211 1111 1111 2222222366899999988865 3444 55556652
Q ss_pred CceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC-CCe--EEEEEcCCCceecccccccccccCCCCcccccccc
Q 015363 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (408)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (408)
... ..+ +... ..-....|+|+| .+++..+. +|. |.+.|+.++... +.+...
T Consensus 316 ~~~-~ri-----T~~~--~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~~----~~lt~~------------- 369 (425)
T COG0823 316 SQV-TRL-----TFSG--GGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGKI----RILTST------------- 369 (425)
T ss_pred Cce-eEe-----eccC--CCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCCCcE----EEcccc-------------
Confidence 222 221 1222 222278999999 66665553 354 666666655421 222222
Q ss_pred ceeEEEEEccCCCEEEEeCC--CeEEEEECCCCCCcee
Q 015363 342 ASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVA 377 (408)
Q Consensus 342 ~~i~~~~~spdg~~l~s~~d--~~v~~wd~~~~~~~~~ 377 (408)
.....-+|.|+|+.+...+. +.=.++.+...++..+
T Consensus 370 ~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 370 YLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred ccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 22345678899988876532 3334444444344443
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00028 Score=65.57 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=92.8
Q ss_pred ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCC
Q 015363 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (408)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (408)
++-|+..|.|++++ ... .+ +.. ..|... ..+|.+++++ .||+|.|..+.+.+.... ++
T Consensus 52 ~~~GtH~g~v~~~~-~~~-------~~-~~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~-~d---- 110 (846)
T KOG2066|consen 52 FALGTHRGAVYLTT-CQG-------NP-KTN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ-YD---- 110 (846)
T ss_pred eeeccccceEEEEe-cCC-------cc-ccc-cccccc------ccCCceEEEecCCCcEEEeeccCCcccee-Ee----
Confidence 47788889999877 211 11 110 122211 5679999999 999999999885554432 21
Q ss_pred cccCCcCCeEEEEEcCC----CCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccC
Q 015363 277 NMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (408)
Q Consensus 277 ~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spd 352 (408)
-..++.+++++|+ ..+.+++|+..| +.++.-+-.... .....++. .++|.++.|.
T Consensus 111 ----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----~~v~l~~~----------eG~I~~i~W~-- 169 (846)
T KOG2066|consen 111 ----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----DSVVLSEG----------EGPIHSIKWR-- 169 (846)
T ss_pred ----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----cceeeecC----------ccceEEEEec--
Confidence 2566889999998 236899999888 878765433221 11122221 3789999995
Q ss_pred CCEEEEeCCCeEEEEECCCCCCceeee
Q 015363 353 GRHILSRDYMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 353 g~~l~s~~d~~v~~wd~~~~~~~~~~~ 379 (408)
|.+||-++|-.|++||+.+ ++.+-.+
T Consensus 170 g~lIAWand~Gv~vyd~~~-~~~l~~i 195 (846)
T KOG2066|consen 170 GNLIAWANDDGVKVYDTPT-RQRLTNI 195 (846)
T ss_pred CcEEEEecCCCcEEEeccc-cceeecc
Confidence 8899999988899999987 4444444
No 326
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.85 E-value=0.014 Score=49.99 Aligned_cols=263 Identities=12% Similarity=0.119 Sum_probs=126.5
Q ss_pred eEEEEECCCCCeEEEee----------cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccc
Q 015363 38 ISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (408)
Q Consensus 38 V~~~~~s~~~~~l~sg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (408)
.-.+..+|+++.+++++ +.-.|.+||..+.... .+++ ..+..+....
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~----~EI~-------iP~k~R~~~~------------ 94 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT----GEIE-------IPPKPRAQVV------------ 94 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE----EEEE-------ETTS-B--BS------------
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc----ceEe-------cCCcchheec------------
Confidence 34567899999888753 3458999998876421 0000 0000011000
Q ss_pred ccccccceeEEEEeecCCCcEEEEE--eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCC-C
Q 015363 108 SLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-G 184 (408)
Q Consensus 108 ~~~~~~~v~~v~~~p~~~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~ 184 (408)
.......++ .+|+++++. +--..|.|-|+..++........... ..-|.+ .
T Consensus 95 -----~~~~~~~ls--~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~-------------------~iyP~~~~ 148 (342)
T PF06433_consen 95 -----PYKNMFALS--ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCW-------------------LIYPSGNR 148 (342)
T ss_dssp -------GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEE-------------------EEEEEETT
T ss_pred -----ccccceEEc--cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEE-------------------EEEecCCC
Confidence 112234553 456676664 34557888888888887766664321 111111 1
Q ss_pred eeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCC-CCEEEEecCCeEEEEeCCC
Q 015363 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEI 263 (408)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~d~~i~iwd~~~ 263 (408)
.+ .+-..||.+.-.. +.. ++....+....+....+..+..-++... +.++....+|.|+--|+..
T Consensus 149 ~F------------~~lC~DGsl~~v~-Ld~-~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg 214 (342)
T PF06433_consen 149 GF------------SMLCGDGSLLTVT-LDA-DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSG 214 (342)
T ss_dssp EE------------EEEETTSCEEEEE-ETS-TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETT
T ss_pred ce------------EEEecCCceEEEE-ECC-CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccC
Confidence 11 3334455444433 221 1111111112221222222223333333 3455566788888888873
Q ss_pred CCcee-eEeecCC-Cc--ccCCcCCeEEEEEcCCCCceEEEEeCC----------CeEEEEEcCCCceeccccccccccc
Q 015363 264 SNQSF-NIVDVKP-AN--MEDLTEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDMRQSALCDTHSKLFEEQE 329 (408)
Q Consensus 264 ~~~~~-~~~~~~~-~~--~~~~~~~v~~~~~~p~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~ 329 (408)
..... ...++-. .. -....+.-.-+++++.. ..|.+--.. ..|.++|+.+++.+ ..+...
T Consensus 215 ~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv----~Ri~l~- 288 (342)
T PF06433_consen 215 DSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV----ARIPLE- 288 (342)
T ss_dssp SSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE----EEEEEE-
T ss_pred CcccccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCCCeEE----EEEeCC-
Confidence 33211 1111100 00 00011222347777655 333333221 25888899998766 344332
Q ss_pred CCCCccccccccceeEEEEEccCCC-EEEEe--CCCeEEEEECCCCCCceeeeeec
Q 015363 330 APGTRSFFTEIIASISDIKFARNGR-HILSR--DYMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 330 ~~~~~~~~~~h~~~i~~~~~spdg~-~l~s~--~d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
..+.+|..+.|.+ +|++. .++.+.+||..+ |+.++++.+-
T Consensus 289 ------------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~l 331 (342)
T PF06433_consen 289 ------------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQL 331 (342)
T ss_dssp ------------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred ------------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhcc
Confidence 3577899998776 55543 468999999998 7999888754
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.80 E-value=0.018 Score=51.32 Aligned_cols=247 Identities=12% Similarity=0.145 Sum_probs=116.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccC-CCCCeEee--cCCceeeEEccCCCeeecc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA-GNGPIFGS--HVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~~~~~~~l~~~ 189 (408)
..+....|+|+ |+.++... ++.|.+++..++...++.... ...... -...++.- -.....++|+||++.+..+
T Consensus 43 ~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 43 PKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp TTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred cccccceeecC--CCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 55888999876 77887764 678999998887555443322 110000 00001100 0223478999999988654
Q ss_pred cccccC----------------------ccccCCCCCceeeecee-eeccccccccccceeeccccccceEEEEeCCCCC
Q 015363 190 FGCASN----------------------DSSFPPGGVSSLRLPVV-VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (408)
Q Consensus 190 ~~~~~~----------------------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (408)
...... .+-..|..+..+.++-+ +...+......+ .. .......+..+.|.+++.
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~-~~-~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP-NS-LNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE----HH-HHTSSEEEEEEEEEETTE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec-cc-cCCCccCcccceecCCCc
Confidence 221110 11233455555555330 222111110000 00 123345688999999998
Q ss_pred EEE-Ee---c--CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc-CCCCceEEEEeCCCe--EEEEEcCCCce
Q 015363 247 TFI-SA---D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS--IRLIDMRQSAL 317 (408)
Q Consensus 247 ~l~-~~---~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~--i~iwd~~~~~~ 317 (408)
.|+ .- . ...+.++|..++........... +--..-....|. +++..++.....||. |.+++...+..
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~----~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~ 272 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD----GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP 272 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS----SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC----cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence 444 32 2 23455667764333322211111 111111244554 676566666667775 44455554432
Q ss_pred ecccccccccccCCCCccccccccceeEE-EEEccCCCEEE-EeC--C-CeEEEEECCCC-CCceeeeeeccccc
Q 015363 318 CDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHIL-SRD--Y-MTLKLWDINMD-SGPVATFQVHEHLR 386 (408)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~spdg~~l~-s~~--d-~~v~~wd~~~~-~~~~~~~~~~~~~~ 386 (408)
+.+... .-.|.. +.|+++++.|+ ++. + ..-.||.++.. +..++.+....+.-
T Consensus 273 -----~~lT~G------------~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~ 330 (353)
T PF00930_consen 273 -----RQLTSG------------DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH 330 (353)
T ss_dssp -----EESS-S------------SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred -----eccccC------------ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence 222211 134544 67888877554 442 2 55566655554 55666666554443
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.80 E-value=0.0028 Score=60.88 Aligned_cols=153 Identities=15% Similarity=0.172 Sum_probs=91.9
Q ss_pred CcEEEEE-eCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCC
Q 015363 126 SALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (408)
Q Consensus 126 ~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (408)
..+|+.. .....|+-.|++.|+.+.....+... . ...+.|+.+.-.. + ..-.+.|-.+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-------~---------v~~~~p~~K~aql----t-~e~tflGls~ 551 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-------P---------VVDIAPDSKFAQL----T-NEQTFLGLSD 551 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCc-------c---------eeEeccccccccc----C-CCceEEEECC
Confidence 3344443 35678889999999998877776532 1 1344444332100 0 0112666677
Q ss_pred ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcC
Q 015363 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (408)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (408)
..+..|| .+-..........+.+ .....++|++-+.+|. +|+| .+|.||+||-- +.+... .+++...
T Consensus 552 n~lfriD-pR~~~~k~v~~~~k~Y--~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~-g~~AKT-------~lp~lG~ 619 (794)
T PF08553_consen 552 NSLFRID-PRLSGNKLVDSQSKQY--SSKNNFSCFATTEDGY-IAVGSNKGDIRLYDRL-GKRAKT-------ALPGLGD 619 (794)
T ss_pred CceEEec-cCCCCCceeecccccc--ccCCCceEEEecCCce-EEEEeCCCcEEeeccc-chhhhh-------cCCCCCC
Confidence 7777777 4322111111111111 3345688888888875 5555 99999999954 333222 2677789
Q ss_pred CeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 284 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
+|..|..+.|| +++++.+ +..|.|++..
T Consensus 620 pI~~iDvt~DG-kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 620 PIIGIDVTADG-KWILATC-KTYLLLIDTL 647 (794)
T ss_pred CeeEEEecCCC-cEEEEee-cceEEEEEEe
Confidence 99999999999 6666544 5678888763
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0017 Score=61.05 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=77.9
Q ss_pred ccceEE-EEECCCCCeEEEee----cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccc
Q 015363 35 VDIISA-IEFDKSGDHLATGD----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (408)
Q Consensus 35 ~~~V~~-~~~s~~~~~l~sg~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (408)
.+.|.. ..|+|...++|+++ +.|.|.||-- +++.. -.. ++.
T Consensus 14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPq-------------------r~V--t~P------------ 59 (1416)
T KOG3617|consen 14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQ-------------------RDV--TYP------------ 59 (1416)
T ss_pred ccccccccccCCCCceeEEEEecCCCCceEEEEec-CCCCC-------------------ccc--ccc------------
Confidence 344444 57999999999887 4688988853 33211 000 111
Q ss_pred ccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecc
Q 015363 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (408)
Q Consensus 110 ~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (408)
-.+++++|+|. .-.|+.|-.-|.+.+|...+.+...+...+..+ +. .+.|+++|.++
T Consensus 60 ---~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~--------i~-------~l~wS~~G~~l--- 116 (1416)
T KOG3617|consen 60 ---VHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAP--------IQ-------GLDWSHDGTVL--- 116 (1416)
T ss_pred ---eehhhhccChH--HHHHhhccccceeEEEecCCceeeeeccCCCCC--------ce-------eEEecCCCCeE---
Confidence 23678999876 446777888899999999887765554444332 22 58999999998
Q ss_pred cccccCccccCCCCCceeeece
Q 015363 190 FGCASNDSSFPPGGVSSLRLPV 211 (408)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~ 211 (408)
+++..-|.+.+|.
T Consensus 117 ---------~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 117 ---------MTLDNPGSVHLWR 129 (1416)
T ss_pred ---------EEcCCCceeEEEE
Confidence 9999999999998
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0002 Score=61.09 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=63.9
Q ss_pred ccccccceEEEEeCCCCC-EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363 229 AHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (408)
Q Consensus 229 ~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 306 (408)
+..+...|++++|+|..+ ++..+ -+..|+|.|+++.. .... +..+ ..+++++|.-+...++.+|-..|.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vss-------y~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSS-------YIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeh-------eecc-CCceeeeeccCCcceeEEeccCce
Confidence 578888999999999987 45556 79999999999443 3332 3344 778999999998788899999999
Q ss_pred EEEEEcCCCc
Q 015363 307 IRLIDMRQSA 316 (408)
Q Consensus 307 i~iwd~~~~~ 316 (408)
|.+||++..+
T Consensus 260 VlvyD~R~~~ 269 (463)
T KOG1645|consen 260 VLVYDMRQPE 269 (463)
T ss_pred EEEEEccCCC
Confidence 9999999764
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00082 Score=61.70 Aligned_cols=207 Identities=12% Similarity=0.134 Sum_probs=119.8
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCC
Q 015363 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (408)
Q Consensus 124 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (408)
..+++++.|+.-|.+.+++-..++.......-. .+.+. ....+++...+ +.|+.
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~-------~~~~~-------~~~vs~~e~lv------------Aagt~ 96 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA-------TGITC-------VRSVSSVEYLV------------AAGTA 96 (726)
T ss_pred cCCceEEEecccceEEEEecCchhhhcccccCc-------cceEE-------EEEecchhHhh------------hhhcC
Confidence 447799999999999999988876544322111 11222 45666666665 88888
Q ss_pred CceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCc
Q 015363 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (408)
Q Consensus 204 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
.|.|.++. +.. ...............|...|++++|++++..+.+| ..|+|.+-.+... .... .+...+..-.
T Consensus 97 ~g~V~v~q-l~~-~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~---~~~q~il~~d 170 (726)
T KOG3621|consen 97 SGRVSVFQ-LNK-ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFL---SKSQEILSED 170 (726)
T ss_pred CceEEeeh-hhc-cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhc---cccceeeccC
Confidence 88888877 443 22222222223335578899999999999999999 8999998888741 1111 1111223335
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccc-eeEEEEEcc-----CCCEE
Q 015363 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFAR-----NGRHI 356 (408)
Q Consensus 283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~sp-----dg~~l 356 (408)
..|-.+.+... .+|++... +-.++++..+.. +.+-.. .. .+ .-...+|-| +..+|
T Consensus 171 s~IVQlD~~q~--~LLVStl~--r~~Lc~tE~eti-----~QIG~k-~R---------~~~~~~GACF~~g~~~~q~~~I 231 (726)
T KOG3621|consen 171 SEIVQLDYLQS--YLLVSTLT--RCILCQTEAETI-----TQIGKK-PR---------KSLIDFGACFFPGQCKAQKPQI 231 (726)
T ss_pred cceEEeecccc--eehHhhhh--hhheeecchhHH-----HHhcCC-Cc---------CCccccceEEeeccccCCCceE
Confidence 66666666532 44544332 234555554421 111111 10 01 012233433 33456
Q ss_pred EEeCCCeEEEEECCCCCCceeeeeec
Q 015363 357 LSRDYMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 357 ~s~~d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
+++.- ..++|.++..|..+++..-.
T Consensus 232 ycaRP-G~RlWead~~G~V~~Thqfk 256 (726)
T KOG3621|consen 232 YCARP-GLRLWEADFAGEVIKTHQFK 256 (726)
T ss_pred EEecC-CCceEEeecceeEEEeeehh
Confidence 66543 56789888777777766543
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.72 E-value=0.017 Score=46.87 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=48.2
Q ss_pred CCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeEEEEeecCCC
Q 015363 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (408)
Q Consensus 47 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~ 126 (408)
|++++.|++.|.+.+.+.+++... ..+..- +.|.+-+-. +.++
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~-----------------------w~f~~~-------------~~vk~~a~~-d~~~ 105 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQI-----------------------WNFVIL-------------ETVKVRAQC-DFDG 105 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhhe-----------------------eeeeeh-------------hhhccceEE-cCCC
Confidence 667889999999999999888532 122211 112221111 3457
Q ss_pred cEEEEEeCCCeEEEEEcCCCcEEEEecc
Q 015363 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (408)
Q Consensus 127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 154 (408)
.++..++.|++.+..|..+..++...+-
T Consensus 106 glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 106 GLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ceEEEecCCCcEEEecccccceEEeccc
Confidence 7999999999999999998877665443
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00029 Score=65.89 Aligned_cols=109 Identities=8% Similarity=0.218 Sum_probs=76.1
Q ss_pred eEEEEeecCCCcEEEEEe----CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 116 NKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
+-..|+|..+ +|++++ +.|.|.|+- ++|+...-...+ +.+. +++|+|..-.+
T Consensus 19 ti~SWHPseP--lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-----------~hat-----SLCWHpe~~vL----- 74 (1416)
T KOG3617|consen 19 TISSWHPSEP--LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-----------VHAT-----SLCWHPEEFVL----- 74 (1416)
T ss_pred cccccCCCCc--eeEEEEecCCCCceEEEEe-cCCCCCcccccc-----------eehh-----hhccChHHHHH-----
Confidence 4467988755 888775 567787773 344432222111 1111 58999988776
Q ss_pred cccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCC
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~ 263 (408)
+.|-+.|.+.+|. .... ...+....|..+|..+.|+|+|..+.++ .-|.|.+|....
T Consensus 75 -------a~gwe~g~~~v~~-~~~~-------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 75 -------AQGWEMGVSDVQK-TNTT-------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred -------hhccccceeEEEe-cCCc-------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 8898999999987 2221 1122246788999999999999999999 899999998873
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.69 E-value=0.0043 Score=57.56 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=54.4
Q ss_pred cceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCC-----CcccCCcCCeEEEEEcCCCCceEEEEeCCCe
Q 015363 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 306 (408)
.....++++|||++++++ -+.+|.++|+...+..+.- ++++ .+..- .......+|.++| ..+.+---|..
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~-~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsq 397 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG-KIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQ 397 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc-cCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecce
Confidence 456789999999998876 6999999999854432100 0000 00111 2233568999999 88888888999
Q ss_pred EEEEEcCC
Q 015363 307 IRLIDMRQ 314 (408)
Q Consensus 307 i~iwd~~~ 314 (408)
|..||+..
T Consensus 398 v~kwn~~~ 405 (635)
T PRK02888 398 IVKWNIEA 405 (635)
T ss_pred eEEEehHH
Confidence 99999886
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.67 E-value=0.015 Score=52.77 Aligned_cols=29 Identities=3% Similarity=0.013 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCeEEEEEcCCCcEEEEecc
Q 015363 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (408)
Q Consensus 126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 154 (408)
+..++.++.++.+..+|.++++.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 44777888999999999999987776554
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.65 E-value=0.0083 Score=49.78 Aligned_cols=201 Identities=11% Similarity=0.120 Sum_probs=98.8
Q ss_pred eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (408)
.++|.|+...+ +++....+.|..++ . + ++.++.+........-.|++..++.++++. .++
T Consensus 26 GLTy~pd~~tL-----------faV~d~~~~i~els-~---~----G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 26 GLTYNPDTGTL-----------FAVQDEPGEIYELS-L---D----GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQ 86 (248)
T ss_dssp EEEEETTTTEE-----------EEEETTTTEEEEEE-T---T------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTT
T ss_pred ccEEcCCCCeE-----------EEEECCCCEEEEEc-C---C----CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCC
Confidence 68999987766 24455566665544 1 1 122222211223457788888888777777 799
Q ss_pred eEEEEeCCCCCceeeEee---cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--C-cee-ccccccccc
Q 015363 255 RINLWNLEISNQSFNIVD---VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--S-ALC-DTHSKLFEE 327 (408)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~-~~~-~~~~~~~~~ 327 (408)
.+.++++........... +.......++..+-.++|+|.+ +.|+.+-...-..||.++. . ... ......+..
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 999999853332222111 1100112345668899999998 5555666666667777654 1 110 000001110
Q ss_pred ccCCCCccccccccceeEEEEEccCC-CEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceee
Q 015363 328 QEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHT 405 (408)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~~~~spdg-~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 405 (408)
. ......+.+++++|.. .+++-++ ...|..+|. .|+++..+.-..+..-....+-+.+=|++|..++
T Consensus 166 ~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 166 D---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR--QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE-T--T--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred c---------cceeccccceEEcCCCCeEEEEECCCCeEEEECC--CCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 0 0112457889999964 4444444 489999995 3788887766554332222355677888888888
Q ss_pred ec
Q 015363 406 LY 407 (408)
Q Consensus 406 ~~ 407 (408)
||
T Consensus 235 LY 236 (248)
T PF06977_consen 235 LY 236 (248)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 337
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.63 E-value=0.028 Score=46.95 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCceeeeceee
Q 015363 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV 213 (408)
Q Consensus 134 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 213 (408)
.+|+|..||..+++.+......... . .. .....+++..+ ++++.++.+..|| .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~-----~-~~--------~~~~~~~~~~v------------~~~~~~~~l~~~d-~ 53 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGI-----G-GP--------VATAVPDGGRV------------YVASGDGNLYALD-A 53 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSC-----S-SE--------EETEEEETTEE------------EEEETTSEEEEEE-T
T ss_pred CCCEEEEEECCCCCEEEEEECCCCC-----C-Cc--------cceEEEeCCEE------------EEEcCCCEEEEEE-C
Confidence 3688999999999888776552211 0 00 01122234443 5556778888877 3
Q ss_pred eccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC
Q 015363 214 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP 292 (408)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 292 (408)
...+..-...+ ....... ... .+..++.+ .++.+..+|..+++...+..... ..... ....+....
T Consensus 54 ~tG~~~W~~~~-----~~~~~~~---~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~ 120 (238)
T PF13360_consen 54 KTGKVLWRFDL-----PGPISGA---PVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAV 120 (238)
T ss_dssp TTSEEEEEEEC-----SSCGGSG---EEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEE
T ss_pred CCCCEEEEeec-----cccccce---eee-cccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceE
Confidence 22211111110 0000001 111 23444444 77899999988666665532211 01111 111222222
Q ss_pred CCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 293 THCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 293 ~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
.+ ..++++..++.|..+|+++|+.+
T Consensus 121 ~~-~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 121 DG-DRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp ET-TEEEEEETCSEEEEEETTTTEEE
T ss_pred ec-CEEEEEeccCcEEEEecCCCcEE
Confidence 25 67788888999999999999765
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.62 E-value=0.0066 Score=55.12 Aligned_cols=138 Identities=13% Similarity=0.087 Sum_probs=74.0
Q ss_pred ceeeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c
Q 015363 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (408)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (408)
+..+.++|+|+.+ +. ..+|...+|. . ...+ ....+.-..++|.+.+ .+|+- .
T Consensus 35 p~~ls~npngr~v------------~V-~g~geY~iyt-~---------~~~r---~k~~G~g~~~vw~~~n-~yAv~~~ 87 (443)
T PF04053_consen 35 PQSLSHNPNGRFV------------LV-CGDGEYEIYT-A---------LAWR---NKAFGSGLSFVWSSRN-RYAVLES 87 (443)
T ss_dssp -SEEEE-TTSSEE------------EE-EETTEEEEEE-T---------TTTE---EEEEEE-SEEEE-TSS-EEEEE-T
T ss_pred CeeEEECCCCCEE------------EE-EcCCEEEEEE-c---------cCCc---ccccCceeEEEEecCc-cEEEEEC
Confidence 3478999999986 33 5566666554 1 0000 1112445567898855 46666 7
Q ss_pred CCeEEEE-eCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCC
Q 015363 253 DLRINLW-NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (408)
Q Consensus 253 d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (408)
..+|.++ +.. .... .. +.. ...+..+-. | .+|+..+.+ .|.+||..+++.+ +.+..
T Consensus 88 ~~~I~I~kn~~-~~~~-k~-------i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i----~~i~v---- 144 (443)
T PF04053_consen 88 SSTIKIYKNFK-NEVV-KS-------IKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLI----RRIDV---- 144 (443)
T ss_dssp TS-EEEEETTE-E-TT--------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EE----EEESS----
T ss_pred CCeEEEEEcCc-cccc-eE-------EcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHccee----eEEec----
Confidence 8889996 443 2221 11 111 112333332 7 777776544 8999999998765 33332
Q ss_pred CCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 332 ~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~ 371 (408)
..|..+.|+++|.+++-.++..+.+.+.+.
T Consensus 145 ----------~~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 145 ----------SAVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp -----------E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred ----------CCCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 248999999999999988777888888754
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.58 E-value=0.0067 Score=54.06 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=26.2
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCCC
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~ 68 (408)
...+....|||+|+.+|... ++.|.+++..++.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 46788999999999998885 5789999876653
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.55 E-value=0.012 Score=53.52 Aligned_cols=219 Identities=11% Similarity=0.119 Sum_probs=99.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
.....+.++|+ |.++++ ..||...++.....+....-.. ....|.+.+++
T Consensus 33 ~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~~r~k~~G~g--------------------~~~vw~~~n~y------- 82 (443)
T PF04053_consen 33 IYPQSLSHNPN--GRFVLV-CGDGEYEIYTALAWRNKAFGSG--------------------LSFVWSSRNRY------- 82 (443)
T ss_dssp S--SEEEE-TT--SSEEEE-EETTEEEEEETTTTEEEEEEE---------------------SEEEE-TSSEE-------
T ss_pred cCCeeEEECCC--CCEEEE-EcCCEEEEEEccCCcccccCce--------------------eEEEEecCccE-------
Confidence 34778889654 877777 6677777877444333322111 14677776665
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEee
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 272 (408)
++-...+.|.++.-+.... .+.+... ..+..|-. |.+|....++.|.+||+.+ ++.+..++
T Consensus 83 ------Av~~~~~~I~I~kn~~~~~-------~k~i~~~--~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~ 143 (443)
T PF04053_consen 83 ------AVLESSSTIKIYKNFKNEV-------VKSIKLP--FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRID 143 (443)
T ss_dssp ------EEE-TTS-EEEEETTEE-T-------T-----S--S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEES
T ss_pred ------EEEECCCeEEEEEcCcccc-------ceEEcCC--cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEe
Confidence 4444466777643011111 0011011 12333322 8888777666999999994 44544332
Q ss_pred cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCc---cccccccceeEEEEE
Q 015363 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFTEIIASISDIKF 349 (408)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~i~~~~~ 349 (408)
-..|..+.|++++ .++|..+.+ .+.|++....... . ....+.. ....+....|.+.+|
T Consensus 144 ---------v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~-----~---~~~~g~e~~f~~~~E~~~~IkSg~W 204 (443)
T PF04053_consen 144 ---------VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVA-----A---IPEEGVEDAFELIHEISERIKSGCW 204 (443)
T ss_dssp ---------S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHH-----H---BTTTB-GGGEEEEEEE-S--SEEEE
T ss_pred ---------cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcc-----c---ccccCchhceEEEEEecceeEEEEE
Confidence 2237899999999 888877644 6777765533000 0 0000000 001111357889999
Q ss_pred ccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCC--Ceeeeeeceeee
Q 015363 350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSK--NYFMGLDNIHTL 406 (408)
Q Consensus 350 spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~ 406 (408)
..| -+|.+... .++.+=-. +...++.+.. ..-+..... +.+..+||..++
T Consensus 205 ~~d-~fiYtT~~-~lkYl~~G-e~~~i~~ld~----~~yllgy~~~~~~ly~~Dr~~~v 256 (443)
T PF04053_consen 205 VED-CFIYTTSN-HLKYLVNG-ETGIIAHLDK----PLYLLGYLPKENRLYLIDRDGNV 256 (443)
T ss_dssp ETT-EEEEE-TT-EEEEEETT-EEEEEEE-SS------EEEEEETTTTEEEEE-TT--E
T ss_pred EcC-EEEEEcCC-eEEEEEcC-CcceEEEcCC----ceEEEEEEccCCEEEEEECCCCE
Confidence 876 55666555 77773221 1122333322 222222233 677788886654
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.52 E-value=0.00017 Score=40.15 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=28.8
Q ss_pred eeccceEEEEECCCCCeEEEeecCCeEEEEE
Q 015363 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (408)
Q Consensus 33 ~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~ 63 (408)
.|.+.|.++.|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5788999999999999999999999999996
No 342
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.52 E-value=0.0037 Score=59.35 Aligned_cols=159 Identities=8% Similarity=0.041 Sum_probs=98.2
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
|+-++. |+..+.+|...|+|.+-|..+.+.+..+..|... -..|.-.|..+.+ .|++-
T Consensus 180 v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-----------------iSDfDv~GNlLit-CG~S~ 237 (1118)
T KOG1275|consen 180 VTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-----------------ISDFDVQGNLLIT-CGYSM 237 (1118)
T ss_pred eEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccc-----------------eeeeeccCCeEEE-eeccc
Confidence 555554 4678999999999999999999988888777543 2345555555411 11111
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCC-CEEEEe-cCCeEEEEeCCCCCce-eeEe
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS-FNIV 271 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~-~~~~ 271 (408)
.. ..-..|.-|++|| ++........ .-+.+ ..-+.|+|.- ..++++ ..|...+-|..+.... ..+.
T Consensus 238 R~--~~l~~D~FvkVYD-LRmmral~PI-------~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~ 306 (1118)
T KOG1275|consen 238 RR--YNLAMDPFVKVYD-LRMMRALSPI-------QFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK 306 (1118)
T ss_pred cc--ccccccchhhhhh-hhhhhccCCc-------ccccC-chhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence 10 1113467789999 6554332211 11111 2345677763 445555 8899999884322221 1111
Q ss_pred ecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
- .......+..+.+++++ +.+|.|..+|.|.+|--
T Consensus 307 ~-----v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 307 M-----VNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD 341 (1118)
T ss_pred E-----EccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence 1 22334558999999999 99999999999999973
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00077 Score=61.07 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=61.9
Q ss_pred cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE-EEEEcCCCCceEEEEeCCCeEEEEE
Q 015363 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 311 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd 311 (408)
..+.-+.|+|.-.++|.+ .+|.|.+..++ ..+... ++-+...++ +++|.||| ++||.|-.||+|++-|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 457778999999999999 89999999888 554443 343455555 99999999 9999999999999999
Q ss_pred cCCCcee
Q 015363 312 MRQSALC 318 (408)
Q Consensus 312 ~~~~~~~ 318 (408)
+.++..+
T Consensus 91 ve~~~~l 97 (665)
T KOG4640|consen 91 VEKGGRL 97 (665)
T ss_pred ccCCCce
Confidence 9998654
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.48 E-value=0.0048 Score=59.36 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=71.7
Q ss_pred EEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccccccc
Q 015363 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (408)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (408)
.-+.| ++..+..||.+..+..+. ......+ .......|++-..+| +||+|+.+|.||+||- .+... -..+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v--~~~~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A---KT~l 614 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLV--DSQSKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA---KTAL 614 (794)
T ss_pred ceEEEECCCceEEeccCCCCCcee--ecccccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh---hhcC
Confidence 34556 899999999996543211 1000112 234557888888888 8999999999999993 33221 0222
Q ss_pred ccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~ 370 (408)
+ +...+|..|..+.||+||++..+..+.|++..
T Consensus 615 p------------~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 615 P------------GLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred C------------CCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 2 22478999999999999998888889998864
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.46 E-value=9.9e-05 Score=66.69 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=121.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEE-EE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (408)
..+.|+++.-+.+...+++|..+|.|-+-.++...-. .. ...+. ..+.+++|++-....
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a---------------r~Ct~lAwneLDtn~---- 117 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA---------------RPCTSLAWNELDTNH---- 117 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc---------------ccccccccccccHHH----
Confidence 6688888875555457888889999999887754322 00 00000 111245666542221
Q ss_pred ccccCccccCC----CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCC
Q 015363 191 GCASNDSSFPP----GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (408)
Q Consensus 191 ~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~ 265 (408)
+++| ..+..+.+|| +...-..+.... .+..+-.....+++|..+.+++.+| ....++++|++...
T Consensus 118 -------LAagldkhrnds~~~Iwd-i~s~ltvPke~~--~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 118 -------LAAGLDKHRNDSSLKIWD-INSLLTVPKESP--LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred -------HHhhhhhhcccCCcccee-cccccCCCcccc--ccccccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 2333 3457889999 433211111111 1111122445688999888999999 88899999998332
Q ss_pred ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc-CCCceecccccccccccCCCCcccccccccee
Q 015363 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (408)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (408)
..... + ....+..+..+|-.+.++++-. ||.|.+||. +.- ..++..+...+.+.+ ..+
T Consensus 188 ~~~~s-------v--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni---enpl~~i~~~~N~~~--------~~l 246 (783)
T KOG1008|consen 188 DSVSS-------V--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI---ENPLQIILRNENKKP--------KQL 246 (783)
T ss_pred hhhhh-------h--hhhhcccceecCCCCCceeccc-cCceeeccchhhh---ccHHHHHhhCCCCcc--------cce
Confidence 21111 1 2334667888884437777655 999999994 322 233344333322111 358
Q ss_pred EEEEEccCCC-EEEEe-CC-CeEEEEECCC
Q 015363 345 SDIKFARNGR-HILSR-DY-MTLKLWDINM 371 (408)
Q Consensus 345 ~~~~~spdg~-~l~s~-~d-~~v~~wd~~~ 371 (408)
..++|.|... .|++. .| ++|+++|+..
T Consensus 247 ~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 247 FALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8999999543 34444 45 9999999874
No 346
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.02 Score=47.57 Aligned_cols=204 Identities=10% Similarity=0.099 Sum_probs=115.2
Q ss_pred eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (408)
++.|+|+.+.+ |+......-.++- . ..+..++.+....-...-.|.+..++++.++- .++
T Consensus 90 ~LTynp~~rtL------------Fav~n~p~~iVEl--t-----~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~ 150 (316)
T COG3204 90 SLTYNPDTRTL------------FAVTNKPAAIVEL--T-----KEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDR 150 (316)
T ss_pred ceeeCCCcceE------------EEecCCCceEEEE--e-----cCCceEEEecccccCChhHeEEecCCEEEEEehhcc
Confidence 78999999987 5544443333221 1 11222222111111234456777677777776 799
Q ss_pred eEEEEeCCCCCceeeEee--cCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363 255 RINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (408)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (408)
.+.++.+......+.... +........+...-.++|+|.. ..|..+-...-+.||.+.... ..+..|....
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~~~~ 223 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHASLD 223 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCC------cccccccccC
Confidence 999988875433332211 1111122225567789999999 777777777777777766432 1222221100
Q ss_pred CccccccccceeEEEEEccC-CCEEEEeC-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceeeec
Q 015363 333 TRSFFTEIIASISDIKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLY 407 (408)
Q Consensus 333 ~~~~~~~h~~~i~~~~~spd-g~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 407 (408)
+...-.-....|.++.|.+. +.+|+-+. ++.+.-.|.. |.++..+.-+.+....-...-+.+-+++|...+||
T Consensus 224 ~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY 298 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY 298 (316)
T ss_pred cccccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence 00000001235778888874 44555554 4788778875 57677777666654444445577778999998888
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.11 Score=47.26 Aligned_cols=32 Identities=13% Similarity=0.361 Sum_probs=24.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK 147 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~ 147 (408)
+.|.++.|.. .+.|++-..||.++++|+....
T Consensus 81 ~~iv~~~wt~---~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 81 GRIVGMGWTD---DEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred CCEEEEEECC---CCeEEEEEcCCEEEEEeCCCce
Confidence 4599999953 3567788899999999987443
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.35 E-value=0.074 Score=49.72 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceec----ccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD----THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (408)
Q Consensus 283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s 358 (408)
.....+.++|||..+++++..+.+|.+.|+.+.+..- .+-..+.+.- .-.......+|.++|....|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev---------evGlGPLHTaFDg~G~ayts 391 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP---------ELGLGPLHTAFDGRGNAYTT 391 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee---------ccCCCcceEEECCCCCEEEe
Confidence 4457899999994455555668999999998764210 0000000000 00123456789999875555
Q ss_pred e-CCCeEEEEECCC
Q 015363 359 R-DYMTLKLWDINM 371 (408)
Q Consensus 359 ~-~d~~v~~wd~~~ 371 (408)
- -|..|..||+..
T Consensus 392 lf~dsqv~kwn~~~ 405 (635)
T PRK02888 392 LFLDSQIVKWNIEA 405 (635)
T ss_pred EeecceeEEEehHH
Confidence 5 478999999975
No 349
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.31 E-value=0.0012 Score=38.62 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.3
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCC
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTD 66 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~ 66 (408)
-...|.+++|+|...+||.|+.+|.|.|+.++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 345699999999999999999999999999843
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0017 Score=59.02 Aligned_cols=80 Identities=20% Similarity=0.227 Sum_probs=62.1
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
-.-.|.-+.|+|.-.++|++..+|.|.+..+.-.+ +..+.-|. .
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR------------------------lwtip~p~------------~ 62 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR------------------------LWTIPIPG------------E 62 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccce------------------------eEeccCCC------------C
Confidence 34568889999999999999999988888766332 22333333 3
Q ss_pred cee-EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEE
Q 015363 114 KIN-KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV 151 (408)
Q Consensus 114 ~v~-~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 151 (408)
.++ +++|- +||+++|+|-.||+|++.|++++..+..
T Consensus 63 ~v~~sL~W~--~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 63 NVTASLCWR--PDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ccceeeeec--CCCCEEEEEecCCeEEEEEccCCCceec
Confidence 355 99995 5599999999999999999999876654
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.0032 Score=56.91 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=85.0
Q ss_pred cceEEEEeCCCCCEEEEe--c--C-CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCe--
Q 015363 234 YHINSISNNSDGETFISA--D--D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-- 306 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-- 306 (408)
..+..-+|+|++..++.- . . ..+.++|++.+...... ++.++. ...+|+|||.+++++...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~---~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNN---GAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCcc---CCccCCCCCCEEEEEECCCCCcc
Confidence 456677899999877653 2 2 45999999965544322 133333 457999999666666667775
Q ss_pred EEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC--CeEEEEECCCCCCceeeeeeccc
Q 015363 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d--~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
|.++|+..+... .+.... +.-..-.|+|||++|+-.+| |.-.||-.+.++...+.+....+
T Consensus 264 iy~~dl~~~~~~-----~Lt~~~------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~ 326 (425)
T COG0823 264 IYLMDLDGKNLP-----RLTNGF------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG 326 (425)
T ss_pred EEEEcCCCCcce-----ecccCC------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC
Confidence 555677665421 122111 12235689999999997754 66566655555555555555444
Q ss_pred ccceEEecCCCeeeeeec
Q 015363 385 LRPKVMHSSKNYFMGLDN 402 (408)
Q Consensus 385 ~~~~~~~~~~~~~~~~d~ 402 (408)
-...-....+++.|+++.
T Consensus 327 ~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 327 GNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCcCccCCCCCCEEEEEe
Confidence 433222344555555544
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.18 E-value=0.041 Score=38.75 Aligned_cols=66 Identities=20% Similarity=0.349 Sum_probs=44.5
Q ss_pred eEEEEe---CCCC-CEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE
Q 015363 236 INSISN---NSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (408)
Q Consensus 236 v~~i~~---~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 310 (408)
|+++++ ..+| +.|++| +|..|++|+-+. ...+ +.. ...|+++.-...+ .|+.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------i~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------ITE-TDKVTSLCSLGGG--RFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------Eec-ccceEEEEEcCCC--EEEEEecCCEEEEE
Confidence 444544 3343 566677 999999998762 2222 122 4557777777665 69999999999999
Q ss_pred EcCC
Q 015363 311 DMRQ 314 (408)
Q Consensus 311 d~~~ 314 (408)
+-..
T Consensus 69 ~~~~ 72 (111)
T PF14783_consen 69 DRSQ 72 (111)
T ss_pred eCcc
Confidence 8754
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.18 E-value=0.00072 Score=37.38 Aligned_cols=33 Identities=36% Similarity=0.547 Sum_probs=29.4
Q ss_pred ccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (408)
Q Consensus 278 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 311 (408)
+..|...|.++.|+|.+ .++++++.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 45677889999999998 8999999999999996
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.97 E-value=0.0028 Score=37.03 Aligned_cols=30 Identities=20% Similarity=0.636 Sum_probs=26.9
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~ 144 (408)
..|.+++|||. ..++|.++.||.|.++++.
T Consensus 12 ~~v~~~~w~P~--mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPT--MDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCC--CCEEEEEECCCeEEEEECC
Confidence 67999999987 5599999999999999984
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.91 E-value=0.039 Score=38.85 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=22.6
Q ss_pred eeEEEEeec-CC-CcEEEEEeCCCeEEEEEcC
Q 015363 115 INKIRWCQS-AN-SALYLLSTNDKTIKLWKVQ 144 (408)
Q Consensus 115 v~~v~~~p~-~~-~~~l~~~~~d~~i~vwd~~ 144 (408)
|++++++.- .+ ...|++|+.|..|++|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~ 33 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD 33 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC
Confidence 677887752 22 2579999999999999855
No 356
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.0026 Score=50.48 Aligned_cols=104 Identities=12% Similarity=0.178 Sum_probs=59.3
Q ss_pred CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeE-EEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc
Q 015363 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (408)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 321 (408)
.+..+++| .+|.|.+|.....+.....+ ......+- .+.--.++ .+..+++.||.|+.|++...+.+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~~--- 137 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRV-------CSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKVL--- 137 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhh-------hcccccceecccccccc-ceeEEeccCCceeeeccccCcee---
Confidence 35677788 99999999987444332221 11122222 22222333 58889999999999999887654
Q ss_pred ccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C-CCeEEEEECC
Q 015363 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D-YMTLKLWDIN 370 (408)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~-d~~v~~wd~~ 370 (408)
.....|.. .++.....+..+++|+.+ + |..++.|++.
T Consensus 138 -g~~g~h~~-----------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 138 -GYVGQHNF-----------ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred -eeeccccC-----------CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 22222210 233344444455555554 3 4666677665
No 357
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.032 Score=50.06 Aligned_cols=143 Identities=16% Similarity=0.151 Sum_probs=88.3
Q ss_pred ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCC-------EEEEe-cCCeEEEEeCCCCCc-ee
Q 015363 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-------TFISA-DDLRINLWNLEISNQ-SF 268 (408)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~-~d~~i~iwd~~~~~~-~~ 268 (408)
+.++.....++-.| +...+. +... .-+.. |+-+.+.|+.. .-+.| +|..|.-||.+-.+. .+
T Consensus 349 l~~~~~~~~l~klD-IE~GKI------VeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLD-IERGKI------VEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred eeCCCCcCcceeee-ccccee------eeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 45666666666666 433222 2222 22222 66667777642 12346 899999999985444 22
Q ss_pred eEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEE
Q 015363 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 348 (408)
.....+ .+.. .....|.+-..+| ++|+|+.+|.|++||- .+.... ..+++- ..+|..+.
T Consensus 420 ~~~q~k--qy~~-k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK---TAlPgL------------G~~I~hVd 478 (644)
T KOG2395|consen 420 AVVQSK--QYST-KNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK---TALPGL------------GDAIKHVD 478 (644)
T ss_pred eeeecc--cccc-ccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhh---hccccc------------CCceeeEE
Confidence 221111 1211 2334566666676 8999999999999997 442210 223333 57899999
Q ss_pred EccCCCEEEEeCCCeEEEEECC
Q 015363 349 FARNGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 349 ~spdg~~l~s~~d~~v~~wd~~ 370 (408)
.+.||++|++..+..+.+-++.
T Consensus 479 vtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 479 VTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eeccCcEEEEecccEEEEEEEe
Confidence 9999999998887788887775
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.75 E-value=0.31 Score=41.76 Aligned_cols=123 Identities=7% Similarity=0.107 Sum_probs=66.5
Q ss_pred cceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCc-----ccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN-----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 308 (408)
..+.+++|. ++.++.|......+.|+.+ .....+....... ......++..+..+ ++ .+|++- |..-.
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-e~Ll~~--~~~g~ 211 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-EFLLCY--DNIGV 211 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCCceEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeC-Cc-eEEEEe--cceEE
Confidence 667888888 6677777455578889883 3333332211100 00112233333443 34 555543 33333
Q ss_pred EEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeec
Q 015363 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
+.|. .|.......-.+. ..+.++++. ..||++-.++.|.+|++.+ +++++++...
T Consensus 212 fv~~-~G~~~r~~~i~W~---------------~~p~~~~~~--~pyli~~~~~~iEV~~~~~-~~lvQ~i~~~ 266 (275)
T PF00780_consen 212 FVNK-NGEPSRKSTIQWS---------------SAPQSVAYS--SPYLIAFSSNSIEVRSLET-GELVQTIPLP 266 (275)
T ss_pred EEcC-CCCcCcccEEEcC---------------CchhEEEEE--CCEEEEECCCEEEEEECcC-CcEEEEEECC
Confidence 3344 3332211111111 235556663 4688888777899999998 7999988754
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.33 Score=40.42 Aligned_cols=224 Identities=11% Similarity=0.083 Sum_probs=114.0
Q ss_pred eeEEEEeecCCCcEEEEEeCCCe-EEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccc
Q 015363 115 INKIRWCQSANSALYLLSTNDKT-IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (408)
-..|+|+|... .-++.+-+-|+ ..++|....+...+........ .+. --.|+|||.+|....+.
T Consensus 70 ~Hgi~~~p~~~-ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH-------fyG------HGvfs~dG~~LYATEnd- 134 (366)
T COG3490 70 GHGIAFHPALP-RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH-------FYG------HGVFSPDGRLLYATEND- 134 (366)
T ss_pred cCCeecCCCCc-ceEEEEecCCceEEEECCCCCcCcEEEecccCce-------eec------ccccCCCCcEEEeecCC-
Confidence 44577776544 24555555554 4677888776555444332221 110 24688999987332221
Q ss_pred cCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEE--------eCCCCC
Q 015363 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW--------NLEISN 265 (408)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iw--------d~~~~~ 265 (408)
+ -..-|.|-+|| ....- ... -. ...|.-....+.+.+||+.++.+.. -|..- +++..+
T Consensus 135 -----f-d~~rGViGvYd-~r~~f-qrv----gE-~~t~GiGpHev~lm~DGrtlvvanG-GIethpdfgR~~lNldsMe 200 (366)
T COG3490 135 -----F-DPNRGVIGVYD-AREGF-QRV----GE-FSTHGIGPHEVTLMADGRTLVVANG-GIETHPDFGRTELNLDSME 200 (366)
T ss_pred -----C-CCCCceEEEEe-ccccc-cee----cc-cccCCcCcceeEEecCCcEEEEeCC-ceecccccCccccchhhcC
Confidence 1 23447889998 43211 111 12 2566666778999999999987632 12222 233233
Q ss_pred ceeeEeec------CCCccc--CCcCCeEEEEEcCCCCceEEEEeCCCe-----EEEEEcCCCceecccccccccccCCC
Q 015363 266 QSFNIVDV------KPANME--DLTEVITSAEFHPTHCNMLAYSSSKGS-----IRLIDMRQSALCDTHSKLFEEQEAPG 332 (408)
Q Consensus 266 ~~~~~~~~------~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (408)
..+.+++. ...++. -+...++.++..++| .+++.+-..|. -.+=-.+.++ +++.+...
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~----~l~~~~~p---- 271 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGE----PLEFLDLP---- 271 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCC----cCcccCCC----
Confidence 33332220 111222 344567888888888 55544432221 0000111111 11222211
Q ss_pred CccccccccceeEEEEEccCCCEEEEeC--CCeEEEEECCCCCCceee
Q 015363 333 TRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVAT 378 (408)
Q Consensus 333 ~~~~~~~h~~~i~~~~~spdg~~l~s~~--d~~v~~wd~~~~~~~~~~ 378 (408)
+.+.......|-+++.+.+..+++..+ .+...+||..+ |..+..
T Consensus 272 -ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~ 317 (366)
T COG3490 272 -EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSE 317 (366)
T ss_pred -HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC-CcEEec
Confidence 111122234577788886555555443 37899999998 665543
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0073 Score=58.58 Aligned_cols=97 Identities=15% Similarity=0.318 Sum_probs=69.4
Q ss_pred ceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCC
Q 015363 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG 374 (408)
Q Consensus 296 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~ 374 (408)
-.++.|+..|.+-..|+... . +.+...+ .-.++|++++|+.||+.++.| .+|.|.+||+.. ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L-----~~~~~ne---------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-L-----GPLHQNE---------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-c-----chhhcCC---------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 57888998999999888764 1 1111110 013789999999999999999 689999999998 79
Q ss_pred ceeeeeecccccc-eEEecC--CCe-eeeeeceeeecC
Q 015363 375 PVATFQVHEHLRP-KVMHSS--KNY-FMGLDNIHTLYE 408 (408)
Q Consensus 375 ~~~~~~~~~~~~~-~~~~~~--~~~-~~~~d~~~~~~~ 408 (408)
.++.+..|..... .+.... ++. ++..|+.+..|+
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~ 201 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWK 201 (1206)
T ss_pred ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEE
Confidence 9999988877633 333222 233 677787776664
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.57 Score=42.26 Aligned_cols=210 Identities=9% Similarity=0.090 Sum_probs=123.5
Q ss_pred eEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 116 NKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 116 ~~v~~~p~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
..++.++. +. .++....++.|.+.|..+.+......... .+..+.+.++++.+
T Consensus 77 ~~i~v~~~--~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----------------~P~~~~~~~~~~~v-------- 130 (381)
T COG3391 77 AGVAVNPA--GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----------------GPVGLAVDPDGKYV-------- 130 (381)
T ss_pred cceeeCCC--CCeEEEecCCCCeEEEEcCcccceeeEeeecc----------------CCceEEECCCCCEE--------
Confidence 34566433 44 45555567899999977766655443322 22268899999876
Q ss_pred CccccCCC---CCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceee
Q 015363 195 NDSSFPPG---GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (408)
Q Consensus 195 ~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~ 269 (408)
+.+. .++.+.+.| -.. .........+. .+ ..++++|+|..+... .++.|.+.|.. ......
T Consensus 131 ----YV~n~~~~~~~vsvid-~~t------~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~ 196 (381)
T COG3391 131 ----YVANAGNGNNTVSVID-AAT------NKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVR 196 (381)
T ss_pred ----EEEecccCCceEEEEe-CCC------CeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCC-Ccceec
Confidence 3322 356666655 111 11111111111 22 789999999977776 69999999976 332221
Q ss_pred EeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC--CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEE
Q 015363 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (408)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 347 (408)
........ -......+.++|++....++-..+ +.+...|..++..... ...... . ....+
T Consensus 197 --~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~---~~~~~~-----------~-~~~~v 258 (381)
T COG3391 197 --GSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT---DLPVGS-----------G-APRGV 258 (381)
T ss_pred --cccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe---cccccc-----------C-CCCce
Confidence 00000011 123346799999994344444433 5899999988765421 011110 1 24567
Q ss_pred EEccCCCEEEEe-CC-CeEEEEECCCCCCceeeeeeccc
Q 015363 348 KFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 348 ~~spdg~~l~s~-~d-~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
..+|+|+++... .. +.+.+-|..+ ......+.....
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~-~~v~~~~~~~~~ 296 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGAT-DRVVKTGPTGNE 296 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCC-Cceeeeeccccc
Confidence 899999999988 44 8999999987 466665554443
No 362
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.48 E-value=0.29 Score=39.45 Aligned_cols=139 Identities=10% Similarity=0.062 Sum_probs=79.1
Q ss_pred ccceEEEEeCCCCCEEEEe-cC---------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe
Q 015363 233 DYHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (408)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 302 (408)
..+.+.-..+|+|++++.. .| |.++.|-.. .+.-.+ ...-..-..++|+.+...+.+.-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence 3556777889999997643 32 344444443 111111 111122356899988844555556
Q ss_pred CCCeEEEEE--cCCCceeccc-ccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCCCCCceee
Q 015363 303 SKGSIRLID--MRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVAT 378 (408)
Q Consensus 303 ~dg~i~iwd--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~~~~~~~~ 378 (408)
.+-+|.-|| ..+|....+. +..++.... .++ ...-.++...+|.+.++. +.++|...|..+ |+.++.
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~-------~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e 248 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP-------FES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE 248 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCC-------cCC-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence 678887787 6666443211 111111100 000 112234556678877777 569999999998 899999
Q ss_pred eeecccccceEE
Q 015363 379 FQVHEHLRPKVM 390 (408)
Q Consensus 379 ~~~~~~~~~~~~ 390 (408)
+.-......+.|
T Consensus 249 iklPt~qitscc 260 (310)
T KOG4499|consen 249 IKLPTPQITSCC 260 (310)
T ss_pred EEcCCCceEEEE
Confidence 988755544444
No 363
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.0039 Score=59.22 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=72.3
Q ss_pred cceEEEEeCC---CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEE-----------EcCCCCceE
Q 015363 234 YHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE-----------FHPTHCNML 298 (408)
Q Consensus 234 ~~v~~i~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~p~~~~~l 298 (408)
..+.-|.|.| +..++-.+ .++.|++...+..... + +.+|..++..++ .+||| ..|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--l-------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~ 250 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--L-------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVF 250 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHHH--H-------HHhcCCCcccHHHHhhchhhheeeCCCC-cEE
Confidence 3445566655 44555566 7888888777643332 1 344665555443 68999 999
Q ss_pred EEEeCCCeEEEEEcC-CCceecccccccccccC-CCCccccccccceeEEEEEccCCCEEEEeCC--CeEEEEECCCCCC
Q 015363 299 AYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEA-PGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSG 374 (408)
Q Consensus 299 ~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d--~~v~~wd~~~~~~ 374 (408)
|.++.||.++.|.+. +++...+++..++.|.. +..+..+..|...+.++.+ -.++++++| ..+++|.-.. -+
T Consensus 251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~---w~~~Itttd~nre~k~w~~a~-w~ 326 (1283)
T KOG1916|consen 251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGK---WVLRITTTDVNREEKFWAEAP-WQ 326 (1283)
T ss_pred EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccce---eEEEEecccCCcceeEeeccc-hh
Confidence 999999999999764 33333344556666631 1111001111111111111 135667765 7899998765 34
Q ss_pred ce
Q 015363 375 PV 376 (408)
Q Consensus 375 ~~ 376 (408)
|+
T Consensus 327 Cl 328 (1283)
T KOG1916|consen 327 CL 328 (1283)
T ss_pred hh
Confidence 44
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.016 Score=56.36 Aligned_cols=105 Identities=15% Similarity=0.269 Sum_probs=70.6
Q ss_pred CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccc
Q 015363 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (408)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 322 (408)
.+..++.| +.|.+...|....-.... .-..-.++|++++|+.+| .+++.|-.+|.|.+||+..++..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~-------~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l---- 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLH-------QNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKIL---- 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhh-------cCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcce----
Confidence 45567777 888888888873211110 012236789999999999 99999999999999999988654
Q ss_pred cccccccCCCCccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCC
Q 015363 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (408)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~ 371 (408)
+.+..+..| ...|..+.+..++..+++++. |. +|.+.-
T Consensus 166 ~~i~e~~ap---------~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 166 KVITEHGAP---------VTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eeeeecCCc---------cceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 554444211 134555566666666777764 55 676654
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.34 E-value=0.44 Score=43.66 Aligned_cols=115 Identities=14% Similarity=0.218 Sum_probs=67.7
Q ss_pred ceEEEEeCCCCCEEEEe-c-C----CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC----
Q 015363 235 HINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 304 (408)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---- 304 (408)
.+....++|+++++|.+ + . ..|+++|++++...... +.. .....+.|.+++ ..|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IEN--PKFSSVSWSDDG-KGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EEE--EESEEEEECTTS-SEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------ccc--cccceEEEeCCC-CEEEEEEeCcccc
Confidence 34467899999999865 2 3 46999999955332222 111 111349999998 555544432
Q ss_pred -------CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--C--C-CeEEEEECCC
Q 015363 305 -------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--Y-MTLKLWDINM 371 (408)
Q Consensus 305 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~--d-~~v~~wd~~~ 371 (408)
..|++|.+.+....+. ..++.... ......+..++|+++|+.. + + ..+.+-++..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~--lvfe~~~~----------~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDE--LVFEEPDE----------PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-E--EEEC-TTC----------TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cccCCCCcEEEEEECCCChHhCe--eEEeecCC----------CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 2377788776643211 23333321 1125678899999998753 2 3 5688888875
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.32 E-value=0.69 Score=44.15 Aligned_cols=112 Identities=10% Similarity=0.166 Sum_probs=53.3
Q ss_pred eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccc-cccccceeeccccccceEEEEeCCCCCEEEEecCC
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-LVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~ 254 (408)
.+.|+|||..+..+. ++.|.+--++...... ....+ +.+...-...+.++.|..++.+++...++
T Consensus 452 sl~wSpDG~RiA~i~-------------~g~v~Va~Vvr~~~G~~~l~~~-~~l~~~l~~~~~~l~W~~~~~L~V~~~~~ 517 (591)
T PRK13616 452 ELQLSRDGVRAAMII-------------GGKVYLAVVEQTEDGQYALTNP-REVGPGLGDTAVSLDWRTGDSLVVGRSDP 517 (591)
T ss_pred eEEECCCCCEEEEEE-------------CCEEEEEEEEeCCCCceeeccc-EEeecccCCccccceEecCCEEEEEecCC
Confidence 789999999884322 2455543312222221 11111 11112223346789999999866444333
Q ss_pred eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEE
Q 015363 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (408)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 309 (408)
...+|.+.-.+.....+ .-......+..++-+++ . ++....++.+.+
T Consensus 518 ~~~v~~v~vDG~~~~~~-----~~~n~~~~v~~vaa~~~--~-iyv~~~~g~~~l 564 (591)
T PRK13616 518 EHPVWYVNLDGSNSDAL-----PSRNLSAPVVAVAASPS--T-VYVTDARAVLQL 564 (591)
T ss_pred CCceEEEecCCcccccc-----CCCCccCceEEEecCCc--e-EEEEcCCceEEe
Confidence 33344443223221110 01112456777777763 3 444455664443
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.19 Score=45.42 Aligned_cols=116 Identities=11% Similarity=0.008 Sum_probs=71.0
Q ss_pred eeEEEEeecCCCcEE-----EEEeCCCeEEEEEcCCCc--EEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeee
Q 015363 115 INKIRWCQSANSALY-----LLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (408)
Q Consensus 115 v~~v~~~p~~~~~~l-----~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (408)
|+-+.+.|+..+..+ +.|-.|+.|.-||.+-.. .+...+.+... ..... .+.+-..+|.
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~----~k~nF-------sc~aTT~sG~--- 443 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS----TKNNF-------SCFATTESGY--- 443 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc----ccccc-------ceeeecCCce---
Confidence 777777665443333 456688899999987321 12222221110 00001 1333344443
Q ss_pred cccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCC
Q 015363 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLE 262 (408)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~ 262 (408)
+++|+.+|.|++||. .....++.+++-..+|..|..+.+|.++++..+..+.+.++.
T Consensus 444 ----------IvvgS~~GdIRLYdr--------i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 ----------IVVGSLKGDIRLYDR--------IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ----------EEEeecCCcEEeehh--------hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 388999999999991 222223335777889999999999999887766777777764
No 368
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.29 E-value=0.28 Score=44.16 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=50.3
Q ss_pred cccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcc-cCCcCCeEEEEEcC-----CC--CceEEE
Q 015363 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHP-----TH--CNMLAY 300 (408)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p-----~~--~~~l~s 300 (408)
....++|++++.+. =.++|.| .+|.+.|.|++ +-..+....++.... ......++++.|.. |+ .-.|.+
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECC-CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 45578999999974 4588889 89999999998 444433333322111 12345678888862 21 136888
Q ss_pred EeCCCeEEEEEcC
Q 015363 301 SSSKGSIRLIDMR 313 (408)
Q Consensus 301 ~~~dg~i~iwd~~ 313 (408)
|+..|.+.+|.+.
T Consensus 161 GTn~G~v~~fkIl 173 (395)
T PF08596_consen 161 GTNSGNVLTFKIL 173 (395)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCCEEEEEEe
Confidence 8999999999875
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.23 E-value=0.31 Score=42.85 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=79.2
Q ss_pred ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCC
Q 015363 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (408)
Q Consensus 205 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (408)
|.|.+++ +..... ...+..........++|++++-- +..|+.+..+.|.+|++.......... .......
T Consensus 62 Gri~v~~-i~~~~~-~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~------~~~~~~~ 131 (321)
T PF03178_consen 62 GRILVFE-ISESPE-NNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKA------FYDSPFY 131 (321)
T ss_dssp EEEEEEE-ECSS------EEEEEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEE------EE-BSSS
T ss_pred cEEEEEE-EEcccc-cceEEEEEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhh------eecceEE
Confidence 8888888 544200 00111111113345778888755 445777777999999999555233321 1112235
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCe
Q 015363 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMT 363 (408)
Q Consensus 285 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~ 363 (408)
+.++... + .+++.|..-..+.++..+..... +..+..... ...+.++.|-+|+..++.++ +|.
T Consensus 132 i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~---l~~va~d~~----------~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 132 ITSLSVF--K-NYILVGDAMKSVSLLRYDEENNK---LILVARDYQ----------PRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp EEEEEEE--T-TEEEEEESSSSEEEEEEETTTE----EEEEEEESS-----------BEEEEEEEE-SSSEEEEEETTSE
T ss_pred EEEEecc--c-cEEEEEEcccCEEEEEEEccCCE---EEEEEecCC----------CccEEEEEEecCCcEEEEEcCCCe
Confidence 6666655 5 57888888888888755542110 112211111 24688999987777777775 599
Q ss_pred EEEEECC
Q 015363 364 LKLWDIN 370 (408)
Q Consensus 364 v~~wd~~ 370 (408)
+.++...
T Consensus 196 l~~l~~~ 202 (321)
T PF03178_consen 196 LFVLRYN 202 (321)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9999886
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.15 E-value=0.77 Score=39.75 Aligned_cols=108 Identities=9% Similarity=0.082 Sum_probs=61.2
Q ss_pred eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCC
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (408)
.++|+||++.+ +++-+..+.|.-|+ +....................+..-.++...+|.+.+++ .+|
T Consensus 167 Gla~SpDg~tl-----------y~aDT~~~~i~r~~-~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 167 GLAFSPDGKTL-----------YVADTPANRIHRYD-LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred ceEECCCCCEE-----------EEEeCCCCeEEEEe-cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 69999999877 34444456676666 332222222221122223344556677888889988766 544
Q ss_pred -eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc-CCCCceEEEEeCC
Q 015363 255 -RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSK 304 (408)
Q Consensus 255 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~d 304 (408)
.|.+|+.+ ++ .+..+. +. ...+++++|- |+...+++++...
T Consensus 235 ~~v~~~~pd-G~-l~~~i~-----lP--~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 235 GRVVRFNPD-GK-LLGEIK-----LP--VKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEEEECCC-Cc-EEEEEE-----CC--CCCCccceEeCCCcCEEEEEecCC
Confidence 99999998 44 443332 22 2456677774 4443455555433
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.04 E-value=1.1 Score=40.47 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=58.2
Q ss_pred CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc---------
Q 015363 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--------- 351 (408)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--------- 351 (408)
....+.++..+|++ ++.|+...=|+|.|+|+.++..+ +.++|..... .+++....-..
T Consensus 306 ~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv----rmWKGYRdAq--------c~wi~~~~~~~~~~~~~~~~ 372 (415)
T PF14655_consen 306 SKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV----RMWKGYRDAQ--------CGWIEVPEEGDRDRSNSNSP 372 (415)
T ss_pred CCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh----hhhccCccce--------EEEEEeeccccccccccccc
Confidence 34557889999998 88888766799999999998654 6677664210 11111111000
Q ss_pred -----CCCEEEE-e-CCCeEEEEECCCCCCceeeeeecc
Q 015363 352 -----NGRHILS-R-DYMTLKLWDINMDSGPVATFQVHE 383 (408)
Q Consensus 352 -----dg~~l~s-~-~d~~v~~wd~~~~~~~~~~~~~~~ 383 (408)
...+|+. + --|.|.||.+++ |..+..+....
T Consensus 373 ~~~~~~~l~LvIyaprRg~lEvW~~~~-g~Rv~a~~v~k 410 (415)
T PF14655_consen 373 KSSSRFALFLVIYAPRRGILEVWSMRQ-GPRVAAFNVGK 410 (415)
T ss_pred CCCCcceEEEEEEeccCCeEEEEecCC-CCEEEEEEeCC
Confidence 1234443 3 359999999998 78888887643
No 372
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.99 E-value=0.04 Score=31.15 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=24.5
Q ss_pred eeEEEEEccCC---CEEEEeCC-CeEEEEECCC
Q 015363 343 SISDIKFARNG---RHILSRDY-MTLKLWDINM 371 (408)
Q Consensus 343 ~i~~~~~spdg---~~l~s~~d-~~v~~wd~~~ 371 (408)
.|.++.|||+. .+|+-+.+ +.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58999999854 48888876 9999999985
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.97 E-value=1.3 Score=40.65 Aligned_cols=246 Identities=13% Similarity=0.154 Sum_probs=118.3
Q ss_pred ceEEEEECCCCCeEEEe-ecCC----eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccc
Q 015363 37 IISAIEFDKSGDHLATG-DRGG----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (408)
Q Consensus 37 ~V~~~~~s~~~~~l~sg-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (408)
.+...++||+|++||.+ +..| .++++|+.+++.. ...+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l----------------------~d~i~~------------- 169 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL----------------------PDGIEN------------- 169 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE----------------------EEEEEE-------------
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc----------------------CCcccc-------------
Confidence 45578899999988865 3334 5999999887531 001111
Q ss_pred ccceeEEEEeecCCCcEEEEEeC-----------CCeEEEEEcCCCcEE--EEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363 112 EEKINKIRWCQSANSALYLLSTN-----------DKTIKLWKVQEKKVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (408)
Q Consensus 112 ~~~v~~v~~~p~~~~~~l~~~~~-----------d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (408)
.....+.|.++ ++.|+.... ...|+.|++.+.... .++...... .... .+.
T Consensus 170 -~~~~~~~W~~d--~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~------~~~~-------~~~ 233 (414)
T PF02897_consen 170 -PKFSSVSWSDD--GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP------FWFV-------SVS 233 (414)
T ss_dssp -EESEEEEECTT--SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT------TSEE-------EEE
T ss_pred -cccceEEEeCC--CCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC------cEEE-------EEE
Confidence 11223899644 556655542 334778888766433 444333221 0011 577
Q ss_pred EccCCCeeecccccccCccccCCCCC-ceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe----cC
Q 015363 179 YMANGGCGERNFGCASNDSSFPPGGV-SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DD 253 (408)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~d 253 (408)
.+++++.+... ...+.+ ..+.+.+ +.... .. ....+.+.....+....+... .+.+++.. ..
T Consensus 234 ~s~d~~~l~i~---------~~~~~~~s~v~~~d-~~~~~-~~-~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~ 300 (414)
T PF02897_consen 234 RSKDGRYLFIS---------SSSGTSESEVYLLD-LDDGG-SP-DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPN 300 (414)
T ss_dssp E-TTSSEEEEE---------EESSSSEEEEEEEE-CCCTT-TS-S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT
T ss_pred ecCcccEEEEE---------EEccccCCeEEEEe-ccccC-CC-cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCC
Confidence 88898886210 112222 4455544 22210 00 011111112222222333333 44444433 36
Q ss_pred CeEEEEeCCCCCc--eeeEeecCCCcccCCcC--CeEEEEEcCCCCceEEEEeCCC--eEEEEEcC-CCceecccccccc
Q 015363 254 LRINLWNLEISNQ--SFNIVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKG--SIRLIDMR-QSALCDTHSKLFE 326 (408)
Q Consensus 254 ~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~-~~~~~~~~~~~~~ 326 (408)
+.|.-.++..... .... +..+.. .+..+... +..+++....++ .|+++++. .... ....
T Consensus 301 ~~l~~~~l~~~~~~~~~~~-------l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~-----~~~~ 366 (414)
T PF02897_consen 301 GRLVAVDLADPSPAEWWTV-------LIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKES-----REIP 366 (414)
T ss_dssp -EEEEEETTSTSGGGEEEE-------EE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEE-----EEEE
T ss_pred cEEEEecccccccccceeE-------EcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEE-----eeec
Confidence 7787788875543 1111 233444 34444443 424555555554 68888888 3322 2222
Q ss_pred cccCCCCccccccccceeEEEEEccCCCEEE-E-eC--C-CeEEEEECCC
Q 015363 327 EQEAPGTRSFFTEIIASISDIKFARNGRHIL-S-RD--Y-MTLKLWDINM 371 (408)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~-s-~~--d-~~v~~wd~~~ 371 (408)
... .+.|..+...+++..+. + .+ - .++..||+.+
T Consensus 367 ~p~-----------~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 367 LPE-----------AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp SSS-----------SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred CCc-----------ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 221 14566666666655443 2 22 2 8899999987
No 374
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.95 E-value=1.2 Score=40.00 Aligned_cols=122 Identities=12% Similarity=0.132 Sum_probs=55.9
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc--CCCCceEEEEeCCCeEEEEEc-CCCceecccccccccc
Q 015363 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQ 328 (408)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~ 328 (408)
...++++||+. ..+..+.+++ .........+.|. |+...-|+.+.-.++|..|-- ..+.-..+.+..+...
T Consensus 220 yG~~l~vWD~~-~r~~~Q~idL-----g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 220 YGHSLHVWDWS-TRKLLQTIDL-----GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred ccCeEEEEECC-CCcEeeEEec-----CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 45789999999 6667776653 2222334566664 444233444444555655543 3332221111222111
Q ss_pred -----cCCCCccccccccceeEEEEEccCCCEEEEe--CCCeEEEEECCCCCCceeee
Q 015363 329 -----EAPGTRSFFTEIIASISDIKFARNGRHILSR--DYMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 329 -----~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d~~v~~wd~~~~~~~~~~~ 379 (408)
..+.....|..-..-|+++..|.|.++|..+ -+|.|+.||+....++..+-
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe
Confidence 1111111122223568999999999999877 36999999998765554443
No 375
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.89 E-value=0.041 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCC--ceEEEEeCCCeEEEEEcCCC
Q 015363 283 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 283 ~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~ 315 (408)
+.++++.|+|... .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999998763 58888888899999999953
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.97 Score=37.99 Aligned_cols=173 Identities=10% Similarity=0.119 Sum_probs=98.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccc
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (408)
..|.++.|+|+ ...|++......-.+|=..+|+.+.......-.. +=.+.+..++++.
T Consensus 86 ~nvS~LTynp~--~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D--------------pE~Ieyig~n~fv------ 143 (316)
T COG3204 86 ANVSSLTYNPD--TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD--------------PETIEYIGGNQFV------ 143 (316)
T ss_pred ccccceeeCCC--cceEEEecCCCceEEEEecCCceEEEecccccCC--------------hhHeEEecCCEEE------
Confidence 55999999776 4467777777777777777788877766543110 0035555555544
Q ss_pred ccCccccCCCCCceeeeceeeeccccccccc----cceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCce
Q 015363 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----CRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (408)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 267 (408)
++--.++.+.++. +.......... +.... ...+...-.++|+|.+..|..+ +-.-+.||.+......
T Consensus 144 ------i~dER~~~l~~~~-vd~~t~~~~~~~~~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~ 215 (316)
T COG3204 144 ------IVDERDRALYLFT-VDADTTVISAKVQKIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS 215 (316)
T ss_pred ------EEehhcceEEEEE-EcCCccEEeccceEEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc
Confidence 4444555555544 22211111110 11111 1225678899999999888888 7777777777633322
Q ss_pred eeEeecCCCcc--cCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 268 FNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 268 ~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
+........+. .-.-..|.++.|++....+|+-+..++.+.-.|....
T Consensus 216 l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 216 LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 22110000000 0011346778898766477777777888877777644
No 377
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.73 E-value=0.56 Score=45.70 Aligned_cols=91 Identities=18% Similarity=0.333 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC--Cce-------ecccccccccccCCCCcccc-ccccceeEEEEEccC
Q 015363 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SAL-------CDTHSKLFEEQEAPGTRSFF-TEIIASISDIKFARN 352 (408)
Q Consensus 283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~-------~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~spd 352 (408)
-.|..+.++|+| .++|..+..|...+ .+.. +.. .....+++.-. ..+| ..+...|..+.|+|.
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~-----~~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVD-----ERFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEec-----hhhccCCCCceEEEEEEcCC
Confidence 458899999999 88888777664444 3321 100 00000111111 1112 234568999999995
Q ss_pred ---CCEEEE-eCCCeEEEEECCCCCCceeeee
Q 015363 353 ---GRHILS-RDYMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 353 ---g~~l~s-~~d~~v~~wd~~~~~~~~~~~~ 380 (408)
+..|+. .+|+++++||+.....+.+++.
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 456655 5899999999987666666665
No 378
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.68 E-value=0.57 Score=44.44 Aligned_cols=117 Identities=10% Similarity=0.156 Sum_probs=68.0
Q ss_pred eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEc--CCCCceEEEEeCCCeEEEEEc
Q 015363 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~ 312 (408)
..-+.-+.-++..++- +..++.|||.+.+.-..+. .+ ...+.|..+.|. |++ +.+++.+-...|.+|--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence 3344444444444444 6678999999854422221 13 346778999885 778 66777777888888853
Q ss_pred CC-----CceecccccccccccCCCCcccccccc-ceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363 313 RQ-----SALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 313 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~spdg~~l~s~~d~~v~~wd~~~ 371 (408)
.. ......+++.+. +..|+ .+|.+..|.++|.++++++ +.+.|+|-.-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~----------i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~~ 157 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKID----------ISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKWL 157 (631)
T ss_pred cchhhhcCCcccceeEEEE----------eecCCCCCccceeEecCCeEEEEeC-CEEEEECCCc
Confidence 21 111111111111 11112 4689999999987666554 4788887643
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.56 E-value=1.1 Score=42.75 Aligned_cols=128 Identities=11% Similarity=0.137 Sum_probs=66.4
Q ss_pred eEEEEeCCCCCEEEEe-cC-CeEEEEeCCCCCceeeEeecCCCccc-CCcCCeEEEEEcCCCCceEEEEeCCCeEEE---
Q 015363 236 INSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRL--- 309 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i--- 309 (408)
.+.-.|+|+|..+++. +. ..+++.+.....+ +..+.+...... .....|..+.|+||| ..++... +++|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq-l~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ-LARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCce-EEEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 6778999998888776 32 2334443332222 222222111111 224569999999999 6665544 577776
Q ss_pred EEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCcee
Q 015363 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA 377 (408)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~ 377 (408)
-....+.........+.. +-...+.++.|.+++.+++...++...+|.+.-+|....
T Consensus 476 vr~~~G~~~l~~~~~l~~-----------~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 476 EQTEDGQYALTNPREVGP-----------GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD 532 (591)
T ss_pred EeCCCCceeecccEEeec-----------ccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc
Confidence 333333211000011111 112336789999999866554443344555554444433
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.29 Score=40.73 Aligned_cols=103 Identities=13% Similarity=0.161 Sum_probs=65.3
Q ss_pred eEEEEeCCCCC-EEEEe-cCC-eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC-----CeE
Q 015363 236 INSISNNSDGE-TFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSI 307 (408)
Q Consensus 236 v~~i~~~~~~~-~l~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i 307 (408)
-..|+++|.-. -++.+ .-| ...++|......+..+...+...+-+| =.||||| .+|.+.-+| |.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG-~~LYATEndfd~~rGVi 142 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDG-RLLYATENDFDPNRGVI 142 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCC-cEEEeecCCCCCCCceE
Confidence 34577888653 34445 434 457889885555554433222223333 4799999 777766544 789
Q ss_pred EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC
Q 015363 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (408)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~ 360 (408)
-|||.+.+- ..+.++..| .-....+.|.+||+.|+.+.
T Consensus 143 GvYd~r~~f---qrvgE~~t~------------GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 143 GVYDAREGF---QRVGEFSTH------------GIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred EEEeccccc---ceecccccC------------CcCcceeEEecCCcEEEEeC
Confidence 999998552 222455544 34567899999999998763
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.37 E-value=1.5 Score=37.42 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=69.2
Q ss_pred eEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeec-CC------CcccCCcCCeEEEE--EcCCCCceEEEEeCCCe
Q 015363 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV-KP------ANMEDLTEVITSAE--FHPTHCNMLAYSSSKGS 306 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~------~~~~~~~~~v~~~~--~~p~~~~~l~s~~~dg~ 306 (408)
|..+...|+-+.|++-.|+.+.++++..-......... .+ ..+ .....+...+ -...+...|+++ ...+
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va-~kk~ 115 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVA-VKKK 115 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc-cccCCeeEEeeccccccceEEEEE-ECCE
Confidence 78888888888877777799999998743332210000 00 001 1122333333 223342444444 4568
Q ss_pred EEEEEcCCCceec-ccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCce
Q 015363 307 IRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV 376 (408)
Q Consensus 307 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~ 376 (408)
|.+|......... ...+.+... ..+..++|. +..|+.|......+.|+.+ +...
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp-------------~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~ 170 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLP-------------DPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPS 170 (275)
T ss_pred EEEEEEECCcccccceeEEEEcC-------------CCcEEEEEe--CCEEEEEeCCceEEEecCC-CCce
Confidence 9998887642111 122333333 568889998 5677777555788899985 3443
No 382
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.29 E-value=0.84 Score=40.99 Aligned_cols=67 Identities=6% Similarity=0.091 Sum_probs=33.7
Q ss_pred cceEEEEeCCCCCEEEEecCCeEEEEeCCCCC----ceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe
Q 015363 234 YHINSISNNSDGETFISADDLRINLWNLEISN----QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 302 (408)
...+.+++.+++ ++++......++.|..... +...++.--+..-..+......++|.|+| .+.++-+
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 346789999988 5555444433444554221 11112111000001123346789999999 6555444
No 383
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.25 E-value=1.4 Score=36.27 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=49.1
Q ss_pred CCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
-|++++.| ..|.+++.+.+++.+..+..- . ..-=......+++ .++..|+.|+..+..|.++...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-----~---~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-----L---ETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeee-----h---hhhccceEEcCCC-ceEEEecCCCcEEEecccccceE
Confidence 36678888 899999999997767665421 1 1111245667888 89999999999999999987544
No 384
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.24 E-value=2 Score=37.83 Aligned_cols=205 Identities=14% Similarity=0.247 Sum_probs=104.2
Q ss_pred eccceEEEEECCC----CCeEEEeec----------CCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccC
Q 015363 34 EVDIISAIEFDKS----GDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (408)
Q Consensus 34 h~~~V~~~~~s~~----~~~l~sg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h 99 (408)
+...+..+.+..+ ..+|++|+. .|.|.++++...... ..
T Consensus 25 ~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~------------------~~--------- 77 (321)
T PF03178_consen 25 HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN------------------NF--------- 77 (321)
T ss_dssp EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------------------------------
T ss_pred eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc------------------ce---------
Confidence 3344555566553 468888763 289999998764100 00
Q ss_pred CcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcCCCc-EEEEeccCCCCcccCCCCCeEeecCCceeeE
Q 015363 100 EPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (408)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (408)
.+..+...+.+++|++++-. ++ +|++ +..+.|.+|++...+ ........... . ...
T Consensus 78 --~l~~i~~~~~~g~V~ai~~~---~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~-------~---------i~s 134 (321)
T PF03178_consen 78 --KLKLIHSTEVKGPVTAICSF---NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPF-------Y---------ITS 134 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEEE---TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSS-------S---------EEE
T ss_pred --EEEEEEEEeecCcceEhhhh---CC-EEEE-eecCEEEEEEccCcccchhhheecceE-------E---------EEE
Confidence 01111122233779998874 24 4444 345899999999887 55544443211 0 122
Q ss_pred EccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEE
Q 015363 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN 257 (408)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~ 257 (408)
....+..+ +.|+....+.++. ........ ...-.......++++.+-++++.++.+ .+|.+.
T Consensus 135 l~~~~~~I------------~vgD~~~sv~~~~-~~~~~~~l----~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 135 LSVFKNYI------------LVGDAMKSVSLLR-YDEENNKL----ILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp EEEETTEE------------EEEESSSSEEEEE-EETTTE-E----EEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred EeccccEE------------EEEEcccCEEEEE-EEccCCEE----EEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 22334444 7777777777654 22211100 000012234568888888666788888 899999
Q ss_pred EEeCCCC------Cc-eeeEeecCCCcccCCcCCeEEE---EEcC--CCCc-----eEEEEeCCCeEEEE
Q 015363 258 LWNLEIS------NQ-SFNIVDVKPANMEDLTEVITSA---EFHP--THCN-----MLAYSSSKGSIRLI 310 (408)
Q Consensus 258 iwd~~~~------~~-~~~~~~~~~~~~~~~~~~v~~~---~~~p--~~~~-----~l~s~~~dg~i~iw 310 (408)
++..... +. .+.... .+ .....|+++ ++.| .+.. .++.++.+|.|...
T Consensus 198 ~l~~~~~~~~~~~~~~~L~~~~----~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 198 VLRYNPEIPNSRDGDPKLERIS----SF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE-SS-SSTTTTTTBEEEEE----EE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEECCCCcccccccccceeEE----EE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9987621 11 111110 01 123556666 5555 2212 47778889988843
No 385
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.08 E-value=1.8 Score=41.73 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=66.1
Q ss_pred CCCEEEEe-cCCeEEEEeCCC-------C----CceeeEeecCCCcccCCcCCeEEEEEc--CCCCceEEEEeCCCeEEE
Q 015363 244 DGETFISA-DDLRINLWNLEI-------S----NQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRL 309 (408)
Q Consensus 244 ~~~~l~~~-~d~~i~iwd~~~-------~----~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~dg~i~i 309 (408)
....|+.+ +||.|.+|.++. . ........++|.-...-...+++++++ ... +++|++++...|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEE
Confidence 44677777 999999997632 1 000000112221111234568899998 777 89999998888888
Q ss_pred EEcCCCceecccccccccccCCCCccccccccceeEEEEEccCC-----C-EEEEeC-CCeEEEEEC
Q 015363 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-----R-HILSRD-YMTLKLWDI 369 (408)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg-----~-~l~s~~-d~~v~~wd~ 369 (408)
|-....... ......+ .|...|.+|+|-++. . +|++++ .|.+.+|++
T Consensus 192 Faf~l~~~r---~~~~~s~----------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDER---FYHVPSH----------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccc---ccccccc----------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 866542110 0111111 123568899998743 2 555566 599999888
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.07 E-value=0.57 Score=43.25 Aligned_cols=117 Identities=11% Similarity=0.213 Sum_probs=71.1
Q ss_pred cceEEEEeCCCC-----CEEEEecCCeEEEEeCCCCCce------eeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe
Q 015363 234 YHINSISNNSDG-----ETFISADDLRINLWNLEISNQS------FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (408)
Q Consensus 234 ~~v~~i~~~~~~-----~~l~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 302 (408)
..|..+.|.|-+ .+||+--...|.+|.+...... .++-+++. .+.- -...+.|+|.. .+|+.-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-~~pv---LpQGCVWHPk~-~iL~VLT 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-PFPV---LPQGCVWHPKK-AILTVLT 131 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-Cccc---CCCcccccCCC-ceEEEEe
Confidence 568899999863 4555557899999998622111 11111100 0111 11357899998 7777766
Q ss_pred CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe--CCCeEEEEECC
Q 015363 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DYMTLKLWDIN 370 (408)
Q Consensus 303 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~--~d~~v~~wd~~ 370 (408)
....-.+++++...... -..+.+ .+.|.|.+|.+||+.|+.+ +-=.-++||-.
T Consensus 132 ~~dvSV~~sV~~d~srV--kaDi~~-------------~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRV--KADIKT-------------SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCceE--EEeccC-------------CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 66555566766543210 012222 2679999999999998876 33556788865
No 387
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.01 E-value=1.2 Score=41.25 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=34.5
Q ss_pred EEEccCCCEEEEeCC--CeEEEEECCCC-CCceeeeeecccccceEEecCCCe
Q 015363 347 IKFARNGRHILSRDY--MTLKLWDINMD-SGPVATFQVHEHLRPKVMHSSKNY 396 (408)
Q Consensus 347 ~~~spdg~~l~s~~d--~~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 396 (408)
++|+|....+|.++. +.|.||.+... ..-++.++-...+|++=-+|..+.
T Consensus 344 iAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdk 396 (671)
T PF15390_consen 344 IAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDK 396 (671)
T ss_pred eeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCC
Confidence 689999999999875 89999988642 244666666666655444444444
No 388
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=2.8 Score=37.84 Aligned_cols=203 Identities=8% Similarity=0.042 Sum_probs=118.6
Q ss_pred EEEEECCCCC-eEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccceeE
Q 015363 39 SAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (408)
Q Consensus 39 ~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (408)
..++.++.+. ..++...++.|.+.|..+.... .....+ .....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~----------------------~~~~vG--------------~~P~~ 120 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL----------------------GSIPVG--------------LGPVG 120 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccccee----------------------eEeeec--------------cCCce
Confidence 3567777776 4444445678999996554321 001111 12566
Q ss_pred EEEeecCCCcEEEEEeC---CCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeeccccccc
Q 015363 118 IRWCQSANSALYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (408)
Q Consensus 118 v~~~p~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (408)
+++.|. ++.+.++.. ++++.+.|..+.+.......... +..+++.|+|..+
T Consensus 121 ~~~~~~--~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~----------------P~~~a~~p~g~~v-------- 174 (381)
T COG3391 121 LAVDPD--GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT----------------PTGVAVDPDGNKV-------- 174 (381)
T ss_pred EEECCC--CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC----------------cceEEECCCCCeE--------
Confidence 788544 656655543 78899999888877665333211 1268899999876
Q ss_pred CccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC--CeEEEEeCCCCCceeeE
Q 015363 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNI 270 (408)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~ 270 (408)
.++-..++.|.+.+ ........ ...... ..-......+.++|++..+... .+ +.+...|..........
T Consensus 175 ---yv~~~~~~~v~vi~-~~~~~v~~-~~~~~~--~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 175 ---YVTNSDDNTVSVID-TSGNSVVR-GSVGSL--VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred ---EEEecCCCeEEEEe-CCCcceec-cccccc--cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 23335677777766 33322211 110000 1112334578999999977765 23 58888888843322211
Q ss_pred eecCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCCeEEEEEcCCCcee
Q 015363 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALC 318 (408)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~ 318 (408)
. ..+.. ....+..+|+| ..+.+. ...+.+.+-|..+....
T Consensus 248 ~------~~~~~-~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 248 L------PVGSG-APRGVAVDPAG-KAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred c------ccccC-CCCceeECCCC-CEEEEEecCCCeEEEEeCCCCcee
Confidence 1 11111 44678999999 665555 44588999998887553
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.82 E-value=1.1 Score=42.60 Aligned_cols=90 Identities=12% Similarity=0.269 Sum_probs=57.4
Q ss_pred CcccceeeecccCcCcccceeeccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccccCCCccce
Q 015363 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (408)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (408)
....|.....|... ....+-+.-|.-++.-++-+....+.|||...+.. ++
T Consensus 15 ~~~~w~~t~~~~T~--------i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l---------------------E~ 65 (631)
T PF12234_consen 15 NKIEWLLTSTFETG--------ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL---------------------EY 65 (631)
T ss_pred CeEEEEEEEEEecC--------CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE---------------------EE
Confidence 45567766554422 12334444444455444444445899999876642 12
Q ss_pred eeeeccCCcccccccccccccceeEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 015363 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (408)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~ 144 (408)
...|.. . +.|.++.|...++|+.+++.+..+.|.++.-.
T Consensus 66 ~~~f~~-~------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 66 EESFSE-D------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred eeeecC-C------------CceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 223321 2 67999999999999999999999999998643
No 390
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.81 E-value=0.8 Score=40.40 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=59.5
Q ss_pred ceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC----CCceEEEEeCC------
Q 015363 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSK------ 304 (408)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~d------ 304 (408)
..+.|+|.|+|++|++-..|.|++++.. +.....+..+. ............++++|+ + .+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~-~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPDFASNG-YLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC--EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccccCCCC-EEEEEEEcccCCCCC
Confidence 4578999999988887789999999943 33212222221 113334567899999995 4 444444422
Q ss_pred --CeEEEEEcCCCc-eecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363 305 --GSIRLIDMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (408)
Q Consensus 305 --g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~ 359 (408)
..|.-|....+. ........+..... ..-..| .-..|.|.|||.+.++.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----~~~~~H--~g~~l~fgpDG~LYvs~ 131 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPD----TSSGNH--NGGGLAFGPDGKLYVSV 131 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-----CSSSS---EEEEEE-TTSEEEEEE
T ss_pred cceeeEEEeccCCccccccceEEEEEeCC----CCCCCC--CCccccCCCCCcEEEEe
Confidence 245555554331 11000011111100 001122 34569999999766654
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.66 E-value=2.3 Score=35.81 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=61.1
Q ss_pred ceEEEEeCCCCCEEEEe-cCCeEEEEe-CCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---CCCeEEE
Q 015363 235 HINSISNNSDGETFISA-DDLRINLWN-LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRL 309 (408)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~i 309 (408)
.+....|++++...+.. .+...+++. ..........++ .......|..++++||| ..+|... .++.|.+
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~-----~~~~~~~I~~l~vSpDG-~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD-----WPGLRGRITALRVSPDG-TRVAVVVEDGGGGRVYV 140 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec-----ccccCCceEEEEECCCC-cEEEEEEecCCCCeEEE
Confidence 57778999998877776 556666663 222222211111 11112279999999999 5554443 2567776
Q ss_pred EEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (408)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~ 359 (408)
--+.....- .+ ..+... ..........+.+++|.+++.+++.+
T Consensus 141 a~V~r~~~g-~~-~~l~~~-----~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 141 AGVVRDGDG-VP-RRLTGP-----RRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EEEEeCCCC-Cc-ceeccc-----eEecccccCcceeeeecCCCEEEEEe
Confidence 654322110 00 011000 00011113578999999999988877
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.56 E-value=5.4 Score=39.57 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCceEEEEeC----------CCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCC
Q 015363 285 ITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (408)
Q Consensus 285 v~~~~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~ 354 (408)
+.++.|..|...++++|+. .|+|.++.+...+.+ +....+.- .+.+.++.-- +|+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L----~~v~e~~v----------~Gav~aL~~f-ngk 841 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL----ELVAETVV----------KGAVYALVEF-NGK 841 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce----eeeeeeee----------ccceeehhhh-CCe
Confidence 4556688774378887753 478888887763222 22222211 1445555432 566
Q ss_pred EEEEeCCCeEEEEECCCCCCceeeeeecccccceEEecCCCeee-eeece
Q 015363 355 HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFM-GLDNI 403 (408)
Q Consensus 355 ~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 403 (408)
+||+-. ..|++|+..+ .+.++.-..+......+.-...+|.+ ..|-+
T Consensus 842 llA~In-~~vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm 889 (1096)
T KOG1897|consen 842 LLAGIN-QSVRLYEWTT-ERELRIECNISNPIIALDLQVKGDEIAVGDLM 889 (1096)
T ss_pred EEEecC-cEEEEEEccc-cceehhhhcccCCeEEEEEEecCcEEEEeecc
Confidence 665444 4899999987 46777666666665555544445543 33443
No 393
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.54 E-value=4.2 Score=38.21 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=22.5
Q ss_pred CCCEEEEeC-CCeEEEEECCCCCCceeeeee
Q 015363 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 352 dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~ 381 (408)
.+..|+.++ ||.|+.+|.++ |+.+-.++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~t-G~~lW~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATT-GKELWKFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCC-CceeeEEEC
Confidence 456677764 79999999998 788777665
No 394
>PHA02713 hypothetical protein; Provisional
Probab=94.50 E-value=1.5 Score=41.88 Aligned_cols=66 Identities=8% Similarity=0.031 Sum_probs=36.2
Q ss_pred CCCEEEEe-cC------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCC--eEEEEEcCC
Q 015363 244 DGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQ 314 (408)
Q Consensus 244 ~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~~ 314 (408)
++.+.+.| .+ ..+..||.++.++-.... .+.........+.+ ++ .+.++|+.++ .+..||..+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-----~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-----TTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-----ccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence 45666665 32 246778887412222211 12222222223333 56 8899999888 677788877
Q ss_pred Cce
Q 015363 315 SAL 317 (408)
Q Consensus 315 ~~~ 317 (408)
.+-
T Consensus 535 ~~W 537 (557)
T PHA02713 535 YEW 537 (557)
T ss_pred ccc
Confidence 653
No 395
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.49 E-value=0.38 Score=39.43 Aligned_cols=79 Identities=9% Similarity=0.087 Sum_probs=52.3
Q ss_pred EcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEEC
Q 015363 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (408)
Q Consensus 290 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~ 369 (408)
+..++ .+|++-+.+|.+++||+.+++....++....--....... ......|..+.++.+|.-|++-++|..+.|+.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 34456 7788889999999999999876533211110000000000 02346789999999999998888888999998
Q ss_pred CC
Q 015363 370 NM 371 (408)
Q Consensus 370 ~~ 371 (408)
+.
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 75
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.43 E-value=0.083 Score=42.25 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=49.9
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (408)
+.|+.+|.|.+|. . +...... .........-...|..-.++.+..++ .|+.|+.|++. ..+....
T Consensus 74 ~vG~~dg~v~~~n-~-n~~g~~~----d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~------- 139 (238)
T KOG2444|consen 74 MVGTSDGAVYVFN-W-NLEGAHS----DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGY------- 139 (238)
T ss_pred EeecccceEEEec-C-CccchHH----HhhhcccccceeccccccccceeEEeccCCceeeeccc-cCceeee-------
Confidence 7889999999987 2 2111100 00001111112222223344466666 89999999998 3333322
Q ss_pred ccCCc-CCeEEEEEcCCCCceEEEE--eCCCeEEEEEcCC
Q 015363 278 MEDLT-EVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQ 314 (408)
Q Consensus 278 ~~~~~-~~v~~~~~~p~~~~~l~s~--~~dg~i~iwd~~~ 314 (408)
...|. .++.....+-.+ .+++.+ +.|..++.|++..
T Consensus 140 ~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 140 VGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 12233 233333333333 455555 5555666666553
No 397
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=2.7 Score=37.72 Aligned_cols=118 Identities=12% Similarity=0.134 Sum_probs=73.7
Q ss_pred cccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEE
Q 015363 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (408)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 310 (408)
..++|.++.|++|.+.+|+- .+.+|.+++.. +.+...... .........|....|..+- -+|..+..| +-+|
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~~~---~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLEYT---QECKTKNANILGFCWTSST--EIAFITDQG-IEFY 137 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhHHH---HHhccCcceeEEEEEecCe--eEEEEecCC-eEEE
Confidence 34689999999999999998 99999999985 332221111 1122334558888998663 455555444 6777
Q ss_pred EcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C-C-CeEEEEECCC
Q 015363 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-Y-MTLKLWDINM 371 (408)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-d-~~v~~wd~~~ 371 (408)
.....+. .++..+.+ ...|+-..|.++-+.+.-+ + . +++.=+.+++
T Consensus 138 ~v~pekr---slRlVks~------------~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 138 QVLPEKR---SLRLVKSH------------NLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEchhhh---hhhhhhhc------------ccCccEEEEccccceEeeeccccccccccEEEee
Confidence 6655432 22444444 3567778888887755433 2 2 5555565654
No 398
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.00 E-value=3.8 Score=35.67 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=42.5
Q ss_pred EEEeCCCCCEEEEe---------cCC--eEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEE-eCCC
Q 015363 238 SISNNSDGETFISA---------DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKG 305 (408)
Q Consensus 238 ~i~~~~~~~~l~~~---------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg 305 (408)
-+++++..+.|.+- .|+ .|.++|+.+.+ .+..++ + ...+.+|+.+.+...+|++. ..++
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~-----l---~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-RVARIP-----L---EHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-EEEEEE-----E---EEEESEEEEESSSS-EEEEEETTTT
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe-EEEEEe-----C---CCccceEEEccCCCcEEEEEcCCCC
Confidence 46777655444432 122 46677887443 333322 1 23467899998875566544 4589
Q ss_pred eEEEEEcCCCcee
Q 015363 306 SIRLIDMRQSALC 318 (408)
Q Consensus 306 ~i~iwd~~~~~~~ 318 (408)
.|.+||..+++.+
T Consensus 313 ~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 313 TLDVYDAATGKLV 325 (342)
T ss_dssp EEEEEETTT--EE
T ss_pred eEEEEeCcCCcEE
Confidence 9999999999765
No 399
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.92 E-value=4.4 Score=36.04 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=51.3
Q ss_pred cCCeEEEEEcCCCCceEEEEeC---CC-eEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEE
Q 015363 282 TEVITSAEFHPTHCNMLAYSSS---KG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (408)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~s~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~ 357 (408)
..++..+.|+|..+.+|+.|-. +. .-|||-+++.....++++ .+.. ...+..=-|.|||..|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~---~~~~----------~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH---RRME----------GESVGHEFWVPDGSTIW 253 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------T----------TEEEEEEEE-TTSS-EE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee---cCCC----------CcccccccccCCCCEEE
Confidence 5677899999998788888754 22 135565554322212222 1110 13455667999998765
Q ss_pred E-e----C-CCeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeec
Q 015363 358 S-R----D-YMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDN 402 (408)
Q Consensus 358 s-~----~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 402 (408)
- + . +..|.-+|..+ ++........ ...-+.+..++.+++.|-
T Consensus 254 y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p--~~~H~~ss~Dg~L~vGDG 301 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDT-GERRRLMEMP--WCSHFMSSPDGKLFVGDG 301 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT---EEEEEEE---SEEEEEE-TTSSEEEEEE
T ss_pred EEeecCCCCceEEEeeCCCC-CCceEEEeCC--ceeeeEEcCCCCEEEecC
Confidence 3 2 2 35677778877 3433222221 233444556667776653
No 400
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.91 E-value=6.1 Score=39.52 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=78.8
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (408)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (408)
+|.++.|++-..+..++++. -..-.+.+ .+..|.. .++.+| -...+++||+...+.+.+....+ -
T Consensus 911 ~g~~ytyk~~~~g~~lellh-----~T~~~~~v--~Ai~~f~-~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~--~---- 975 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLH-----KTEIPGPV--GAICPFQ-GRVLAG-VGRFLRLYDLGKKKLLRKCELKF--I---- 975 (1205)
T ss_pred CCceEEEEEEecCceeeeee-----ccCCCccc--eEEeccC-CEEEEe-cccEEEEeeCChHHHHhhhhhcc--C----
Confidence 45567776654444443321 11122333 5666777 444443 46789999998876553211111 1
Q ss_pred CccccccccceeEEEEEccCCCEEEEeCC-CeEEEEECCCCCCceeeeeecccc--cceEEecCCCeeeeeeceeeec
Q 015363 333 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL--RPKVMHSSKNYFMGLDNIHTLY 407 (408)
Q Consensus 333 ~~~~~~~h~~~i~~~~~spdg~~l~s~~d-~~v~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~ 407 (408)
...|..+.+. +..|+.|+- -.|.++..+.+++.+..+-..+.. ...+..+..+.+.+.|||+.+|
T Consensus 976 --------p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~ 1043 (1205)
T KOG1898|consen 976 --------PNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIA 1043 (1205)
T ss_pred --------ceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEE
Confidence 2568888874 677888853 566666555556777777666555 4555556777889999999876
No 401
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.87 E-value=4 Score=35.44 Aligned_cols=135 Identities=10% Similarity=0.110 Sum_probs=78.1
Q ss_pred cceEEEEeCCCCCEEEEe-c-----C----CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeC
Q 015363 234 YHINSISNNSDGETFISA-D-----D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~-----d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 303 (408)
...+.+.+.|+|.+.++. . . ..-.+|-+...+...+. +..+-..-+.|+||||+ +.|..+..
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-------ecCcEEecCceEECCCC-CEEEEEeC
Confidence 456678889999888865 4 0 11133433311222222 23334445789999999 55555544
Q ss_pred -CCeEEEEEcCC--CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CC-CeEEEEECCCCCCceee
Q 015363 304 -KGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVAT 378 (408)
Q Consensus 304 -dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d-~~v~~wd~~~~~~~~~~ 378 (408)
.+.|..|++.. +..-.+.... .+....+..-.++...+|.+-+++ .. +.|..|+-+ ++++..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~-----------~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~ 249 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFV-----------DFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLGE 249 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEE-----------EccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEEE
Confidence 58888888763 2111000001 111112455667778888877655 34 499999986 688888
Q ss_pred eeecccccceE
Q 015363 379 FQVHEHLRPKV 389 (408)
Q Consensus 379 ~~~~~~~~~~~ 389 (408)
+..+.....++
T Consensus 250 i~lP~~~~t~~ 260 (307)
T COG3386 250 IKLPVKRPTNP 260 (307)
T ss_pred EECCCCCCccc
Confidence 88875433333
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.81 E-value=4.5 Score=35.76 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=39.1
Q ss_pred CCeEEEEEcC-------CCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCE
Q 015363 283 EVITSAEFHP-------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (408)
Q Consensus 283 ~~v~~~~~~p-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~ 355 (408)
..+..+.|.. .| .+|++.-..+.|....+.....+......+ ......+.++++.|||.+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRG-DLFVADYGGGRIWRLDLDEDGSVTEEEEFL------------GGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp --EEEEEEE-SSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEEEC------------TTSSS-EEEEEEETTSEE
T ss_pred cccCceEEECCccCccccC-cEEEecCCCCEEEEEeeecCCCccceEEcc------------ccCCCCceEEEEcCCCeE
Confidence 4456666653 23 456655556778887776553221111111 122347999999999998
Q ss_pred EEEeC-CCeEE
Q 015363 356 ILSRD-YMTLK 365 (408)
Q Consensus 356 l~s~~-d~~v~ 365 (408)
.++.+ +|.|.
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 88765 57663
No 403
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.55 E-value=3.3 Score=38.00 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=38.3
Q ss_pred cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC
Q 015363 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 294 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 294 (408)
...+.|+|.|++++|++- ..|+|++++..... ......+..............|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCCc
Confidence 456789999999998888 47999999865322 2111111110011125668899999884
No 404
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.52 E-value=9 Score=38.35 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=49.2
Q ss_pred cceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
..-..|.|.++.+.|+.++...+.++|++.......++ .......|..+.-+|..+.+++.- ....|...++.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~------~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~ 276 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLV------TAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVK 276 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhc------cCCChhheeeEEecCCccceEEEE-ecCeEEEEEcc
Confidence 34557889989889998888889999999544321121 233456788888888843333333 24678888887
Q ss_pred C
Q 015363 314 Q 314 (408)
Q Consensus 314 ~ 314 (408)
.
T Consensus 277 ~ 277 (765)
T PF10214_consen 277 S 277 (765)
T ss_pred C
Confidence 7
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=3.7 Score=41.37 Aligned_cols=88 Identities=10% Similarity=0.043 Sum_probs=52.2
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (408)
+....|+.|++.. +....... .. ..-....++++|+|.|..++.| ..|++.-|-.. .. ....+.- ..
T Consensus 172 av~l~dlsl~V~~-~~~~~~~v-----~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-le-ik~~ip~--Pp 239 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKS-TKQLAQNV-----TS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LE-IKSEIPE--PP 239 (1405)
T ss_pred hhhccccchhhhh-hhhhhhhh-----cc--cCcccceeeEEeccccceeeEecCCCeEEEeecc-cc-eeecccC--CC
Confidence 5667777777655 22211111 11 1223568899999999999999 89999888665 22 1111110 11
Q ss_pred ccCCcCCeEEEEEcCCCCceEEE
Q 015363 278 MEDLTEVITSAEFHPTHCNMLAY 300 (408)
Q Consensus 278 ~~~~~~~v~~~~~~p~~~~~l~s 300 (408)
... ...|.++.|-... .++++
T Consensus 240 ~~e-~yrvl~v~Wl~t~-eflvv 260 (1405)
T KOG3630|consen 240 VEE-NYRVLSVTWLSTQ-EFLVV 260 (1405)
T ss_pred cCC-CcceeEEEEecce-eEEEE
Confidence 111 5678999998776 45444
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.21 E-value=7.6 Score=38.17 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=54.0
Q ss_pred cceEEEEeCCCCCEEEEecCCeEEEEeCCC----------CCc--eeeEeecCCCcc-cCCcCCeEEEEEcCCC--CceE
Q 015363 234 YHINSISNNSDGETFISADDLRINLWNLEI----------SNQ--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML 298 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~----------~~~--~~~~~~~~~~~~-~~~~~~v~~~~~~p~~--~~~l 298 (408)
..|..|.++|+|.+++......|.|-.+.. +.. ..+.+.+...-+ ..+...|..+.|+|.+ ...|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 568899999999999887444555554431 111 122222222112 2345678899999984 2678
Q ss_pred EEEeCCCeEEEEEcCCCc
Q 015363 299 AYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 299 ~s~~~dg~i~iwd~~~~~ 316 (408)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 888899999999997543
No 407
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.79 E-value=3.1 Score=32.72 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=25.6
Q ss_pred cceeEEEEeec---CC-CcEEEEEeCCCeEEEEEcCC
Q 015363 113 EKINKIRWCQS---AN-SALYLLSTNDKTIKLWKVQE 145 (408)
Q Consensus 113 ~~v~~v~~~p~---~~-~~~l~~~~~d~~i~vwd~~~ 145 (408)
..|..++|||. ++ +-+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37999999984 22 34677789999999998773
No 408
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.76 E-value=6.8 Score=34.87 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=48.2
Q ss_pred cccceEEEEeCCCCCEEEE-e----cCCe-EEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe---
Q 015363 232 HDYHINSISNNSDGETFIS-A----DDLR-INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--- 302 (408)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~-~----~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--- 302 (408)
....+..+.|+|....+++ | .+.. -++|=+++.+.....+. . ......+..=-|.|+|..+...+.
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~---~~~~e~~gHEfw~~DG~~i~y~~~~~~ 260 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--R---RMEGESVGHEFWVPDGSTIWYDSYTPG 260 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETT
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--c---CCCCcccccccccCCCCEEEEEeecCC
Confidence 3456778899997755543 4 2332 25565554444333211 1 112345666789999944333232
Q ss_pred -CCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363 303 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (408)
Q Consensus 303 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s 358 (408)
.+..|.-+|..++... ...... +-..+--++||+++|.
T Consensus 261 ~~~~~i~~~d~~t~~~~----~~~~~p--------------~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 261 GQDFWIAGYDPDTGERR----RLMEMP--------------WCSHFMSSPDGKLFVG 299 (386)
T ss_dssp T--EEEEEE-TTT--EE----EEEEE---------------SEEEEEE-TTSSEEEE
T ss_pred CCceEEEeeCCCCCCce----EEEeCC--------------ceeeeEEcCCCCEEEe
Confidence 1345777788776431 111111 2335556789988875
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.40 E-value=4.2 Score=37.16 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=63.9
Q ss_pred Ee-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccc
Q 015363 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (408)
Q Consensus 250 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (408)
.| ++..|.-.|.+..+..+.....+. +.+ .....+..-..+| ++|+++..|-|++||--.-..- ..+++-
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~esKd--Y~t-Kn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAK----talP~l 602 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVVESKD--YKT-KNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAK----TALPGL 602 (776)
T ss_pred EeecccceEEecccccCCceeeeeehh--ccc-cccccccccccCc--eEEEecCCCceeeehhhcchhh----hcCccc
Confidence 45 777777778776554444432221 111 1223344444455 8999999999999995432110 222222
Q ss_pred cCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCC
Q 015363 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (408)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~ 371 (408)
...|..+..+.+|++|++.....+.+-|+.-
T Consensus 603 ------------G~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 603 ------------GDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred ------------ccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 4679999999999998887666888888863
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.31 E-value=12 Score=36.49 Aligned_cols=74 Identities=8% Similarity=0.170 Sum_probs=48.6
Q ss_pred cceEEEEeC--CCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC--Cc---eEEEEeCCC
Q 015363 234 YHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN---MLAYSSSKG 305 (408)
Q Consensus 234 ~~v~~i~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~s~~~dg 305 (408)
..+.+++++ ...+++|++ ....|.||-........... .-..+...|.+|+|-++. +. .+++++-.|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~-----~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV-----PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc-----cccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 357788888 778888888 67778777665321111110 011245567889987654 12 778888899
Q ss_pred eEEEEEc
Q 015363 306 SIRLIDM 312 (408)
Q Consensus 306 ~i~iwd~ 312 (408)
.+.+|++
T Consensus 239 ~v~~~~I 245 (717)
T PF08728_consen 239 EVWTFKI 245 (717)
T ss_pred cEEEEEE
Confidence 9999888
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.86 E-value=7.8 Score=37.14 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCC-----eEEEEEcCCCcEEEEecc
Q 015363 125 NSALYLLSTNDK-----TIKLWKVQEKKVKKVFDW 154 (408)
Q Consensus 125 ~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~ 154 (408)
+|.+.|+|+.|| ++-.||..+.+...+...
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCC
Confidence 377889999886 467778777766554433
No 412
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.66 E-value=1.5 Score=34.45 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=26.0
Q ss_pred CeEEEEEcCCC-----CceEEEEeCCCeEEEEEcCC
Q 015363 284 VITSAEFHPTH-----CNMLAYSSSKGSIRLIDMRQ 314 (408)
Q Consensus 284 ~v~~~~~~p~~-----~~~l~s~~~dg~i~iwd~~~ 314 (408)
.+..++|||.| ..+||+.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999965 35899999999999998664
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.65 E-value=2.6 Score=37.90 Aligned_cols=68 Identities=7% Similarity=-0.059 Sum_probs=32.9
Q ss_pred cceEEEEeCCCCCEEEEe--cCCeEEEEeCCCCCceeeEeecCCCcc---------c--CCcCCeEEEEEcCCCCceEEE
Q 015363 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANM---------E--DLTEVITSAEFHPTHCNMLAY 300 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~--~~~~~v~~~~~~p~~~~~l~s 300 (408)
.-|+.|..|.|.++|..+ -.|.|+.||+........+-++..... . .-.+...-+..|.||.++.+|
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 457899999999999876 799999999997666554433211100 0 112234567788888444444
Q ss_pred E
Q 015363 301 S 301 (408)
Q Consensus 301 ~ 301 (408)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 3
No 414
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.44 E-value=0.82 Score=40.79 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.5
Q ss_pred ceeEEEEEccCCCEEEEeCCCeEEEEECCCC
Q 015363 342 ASISDIKFARNGRHILSRDYMTLKLWDINMD 372 (408)
Q Consensus 342 ~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~ 372 (408)
..+.-+++||++.+|++-+.|.++++.+++.
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSEDQGKIRLAQLENR 388 (733)
T ss_pred cCcceeeeCcccchheeecCCceEEEEecCC
Confidence 3566789999999999888899999999874
No 415
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.43 E-value=3.9 Score=37.08 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=31.1
Q ss_pred eccceEEEEECCCCCeEEEeecCCeEEEEEeCCCCC
Q 015363 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD 69 (408)
Q Consensus 34 h~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~ 69 (408)
....+.+|..+|++++.|+...-|+|.|+|+.++..
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 456689999999999999988889999999987753
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.28 E-value=8.1 Score=32.58 Aligned_cols=159 Identities=12% Similarity=0.163 Sum_probs=84.7
Q ss_pred ceEEEEECCCCCeEEEee---cCCeEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCccccccccccccc
Q 015363 37 IISAIEFDKSGDHLATGD---RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (408)
Q Consensus 37 ~V~~~~~s~~~~~l~sg~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (408)
.+.+.+++++++.+|... ....+.++...+... ..+.+ .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------------------------~~~~g--------------~ 66 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------------------------PVLTG--------------G 66 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------------------------eeccC--------------C
Confidence 678999999999776655 223444444332211 11122 2
Q ss_pred ceeEEEEeecCCCcEEEEEeCCCeEEEEE-cCCCcEEEE-eccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccc
Q 015363 114 KINKIRWCQSANSALYLLSTNDKTIKLWK-VQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (408)
Q Consensus 114 ~v~~v~~~p~~~~~~l~~~~~d~~i~vwd-~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (408)
.+....|.++ +...+....+...+++. ..++..... ...... .+.|. .+.++|||..+..
T Consensus 67 ~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~------~~~I~-------~l~vSpDG~RvA~--- 128 (253)
T PF10647_consen 67 SLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL------RGRIT-------ALRVSPDGTRVAV--- 128 (253)
T ss_pred ccccccccCC--CCEEEEEcCCCceEEEEecCCCcceeEEeccccc------CCceE-------EEEECCCCcEEEE---
Confidence 3777888654 66666656566666664 233322211 111100 01233 6899999998732
Q ss_pred cccCccccCCCCCceeeeceeeecccc--ccccccceeeccccccceEEEEeCCCCCEEEEe--cCCeEEE
Q 015363 192 CASNDSSFPPGGVSSLRLPVVVTSQET--NLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINL 258 (408)
Q Consensus 192 ~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~i 258 (408)
+.....++.|.+--+....+. .....+... .......+..++|.+++.+++.+ .+..+..
T Consensus 129 ------v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~-~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 129 ------VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV-APPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ------EEecCCCCeEEEEEEEeCCCCCcceeccceEe-cccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 222334566666552333333 111122222 12334678999999999888876 4443433
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=8 Score=34.93 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=76.5
Q ss_pred eEEEEeCCCCCEEEEecCCeEEEEeCCCCCc--eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 236 INSISNNSDGETFISADDLRINLWNLEISNQ--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
-+.+-|+..++.+++...|.+.-|-+...+. +... -....++|.++.|++|. +.+|+--.+.+|.+++..
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSf-------dm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISF-------DMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFI 96 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCcee-------eecCCCceeEEEeccCc-ceEEEEecCceEEEEecC
Confidence 3445555555555554445555565542221 1111 12235689999999999 999999999999999884
Q ss_pred CCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeeecccc
Q 015363 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHL 385 (408)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~~ 385 (408)
..... ....++ .+..+..|....|+.+ .-+|--++..+-+|....+.+.++..+.|..-
T Consensus 97 ~d~~~-----l~~~~~-------ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~n 155 (657)
T KOG2377|consen 97 PDNSQ-----LEYTQE-------CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLN 155 (657)
T ss_pred CCchh-----hHHHHH-------hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccC
Confidence 43221 111111 1111346888999854 66666666667777776555555555555443
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.80 E-value=1.5 Score=36.03 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=48.4
Q ss_pred eCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCccc-------CCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 241 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 241 ~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
+...+.+|.+- .+|.+++||+.+.+..+..+.+.|. +. .....|..+.++.+| .-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecc
Confidence 34467777766 9999999999965544433222211 11 345678899999888 6566554 578899987
Q ss_pred CCCc
Q 015363 313 RQSA 316 (408)
Q Consensus 313 ~~~~ 316 (408)
.-+.
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 7553
No 419
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.57 E-value=9.1 Score=32.98 Aligned_cols=130 Identities=11% Similarity=0.149 Sum_probs=67.1
Q ss_pred eEEEEeCCCCCEEEE--e--c-C--------CeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCC-----ce
Q 015363 236 INSISNNSDGETFIS--A--D-D--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-----NM 297 (408)
Q Consensus 236 v~~i~~~~~~~~l~~--~--~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-----~~ 297 (408)
|..+...+.+++.+. | . . -+|.+||+.+ .+.++.+.+.+.... ..+.+..+.+..... ..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t-~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKT-NQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTT-TCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCC-CcEEEEEECChHHcc-cccccceEEEEccCCCCcceEE
Confidence 455666666665553 3 1 1 3788899994 457777766554343 356678888876321 22
Q ss_pred EEEEeCCCeEEEEEcCCCceecccccccccccCCCCc---cccc----cccceeEEEEEcc---CCCEEEEeCCCeEEEE
Q 015363 298 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFT----EIIASISDIKFAR---NGRHILSRDYMTLKLW 367 (408)
Q Consensus 298 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~h~~~i~~~~~sp---dg~~l~s~~d~~v~~w 367 (408)
.++=+..+-|.++|+.+++.. +.+..+..+.+. .... .....+..++.+| +|++|+-+.-..-++|
T Consensus 81 YItD~~~~glIV~dl~~~~s~----Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly 156 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSW----RVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLY 156 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEE----EEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEE
T ss_pred EEeCCCcCcEEEEEccCCcEE----EEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEE
Confidence 333334568999999998653 333222222111 0000 1123367777766 7777776643334455
Q ss_pred ECCC
Q 015363 368 DINM 371 (408)
Q Consensus 368 d~~~ 371 (408)
.+.+
T Consensus 157 ~v~T 160 (287)
T PF03022_consen 157 RVPT 160 (287)
T ss_dssp EEEH
T ss_pred EEEH
Confidence 5543
No 420
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.31 E-value=14 Score=33.58 Aligned_cols=113 Identities=11% Similarity=0.150 Sum_probs=67.1
Q ss_pred ccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCc----eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEE
Q 015363 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQ----SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (408)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 308 (408)
...++.+.+.+++.+++++..|.+.. ....+.. .+... ........+..+.|.+++ ..+++ +..|.+.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~~~a~-G~~G~v~ 351 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-EAWAA-GGSGILL 351 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeec-----ccCCCCcceEEEEEcCCC-cEEEE-ECCCcEE
Confidence 35688999999999998887776543 3331221 11111 111122458899999887 65555 4677666
Q ss_pred EEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEE
Q 015363 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 367 (408)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~w 367 (408)
... ..++. ++..... .........+.|.++++.+++|.+|.|.-|
T Consensus 352 ~s~-D~G~t-------W~~~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGKS-------WKRDKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EeC-CCCcc-------eeEcccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 553 33322 1111000 001245779999988999999998887655
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.08 E-value=12 Score=32.46 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=64.8
Q ss_pred ccceEEEEeCCCCCEEEEecCCeE-EEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363 233 DYHINSISNNSDGETFISADDLRI-NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (408)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 311 (408)
...++.+..+++|++++++..|.+ .-||-. ....... -..-...|..|.|+|++ .+.+.+ ..|.|++=+
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~------~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPH------NRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEE------E--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEE------ccCccceehhceecCCC-CEEEEe-CCcEEEEcc
Confidence 366888889999999999955554 456654 2222221 12235779999999998 665644 888898877
Q ss_pred cCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeeee
Q 015363 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
..... ..+..+..+ ...-.-.+.+++|.+++...++|..|.+. ...+ .|+.-+..+.
T Consensus 214 ~~~~~------~~w~~~~~~-----~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~D-gGktW~~~~~ 270 (302)
T PF14870_consen 214 DPDDG------ETWSEPIIP-----IKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTD-GGKTWQKDRV 270 (302)
T ss_dssp -TTEE------EEE---B-T-----TSS--S-EEEEEESSSS-EEEEESTT-EE-EESS-TTSS-EE-GG
T ss_pred CCCCc------cccccccCC-----cccCceeeEEEEecCCCCEEEEeCCccEE-EeCC-CCccceECcc
Confidence 21111 122111100 00001348999999999988888776443 3344 3666665554
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=6.7 Score=39.67 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=66.1
Q ss_pred ceEEEEeCCCCCE-EEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 235 HINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 235 ~v~~i~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
...++.|+|.-.. .+.. .|+.|++..+....+.... + .-....++++|+|.| ..++.|-..|++.-|..
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-------~-p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-------F-PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-------c-CcccceeeEEecccc-ceeeEecCCCeEEEeec
Confidence 3457788887533 3344 8999998887744333321 1 124557999999999 89999999999998865
Q ss_pred CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE
Q 015363 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (408)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s 358 (408)
.-... ..+.+.. +.+ ...|.+|+|-..-.+|+.
T Consensus 228 ~leik-----~~ip~Pp-------~~e-~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 228 SLEIK-----SEIPEPP-------VEE-NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cccee-----ecccCCC-------cCC-CcceeEEEEecceeEEEE
Confidence 43211 1111111 001 257999999987777775
No 423
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=6.4 Score=40.39 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=54.5
Q ss_pred cccceEEEEeCCCCCEEEEecCCeEEEEeCC--CCC----ceeeEeecC--------C--Cccc-CCcCCeEEEEEcCCC
Q 015363 232 HDYHINSISNNSDGETFISADDLRINLWNLE--ISN----QSFNIVDVK--------P--ANME-DLTEVITSAEFHPTH 294 (408)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~--~~~----~~~~~~~~~--------~--~~~~-~~~~~v~~~~~~p~~ 294 (408)
....|+++....+|++|.+|.||. +|.+. ... +..+.+... | ..+. .+..+|..+......
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 346688999889999999996664 44432 100 000111000 0 1123 567789999999888
Q ss_pred CceEEEEeCCCeEEEEEcCCC
Q 015363 295 CNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 295 ~~~l~s~~~dg~i~iwd~~~~ 315 (408)
.++.+-+..++|.+||+...
T Consensus 255 -~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 255 -NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred -ceeeeeccCceEEEEEccCC
Confidence 89999999999999999873
No 424
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.59 E-value=20 Score=34.43 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=21.8
Q ss_pred CcEEEEEeCC------CeEEEEEcCCCcEEEEeccC
Q 015363 126 SALYLLSTND------KTIKLWKVQEKKVKKVFDWN 155 (408)
Q Consensus 126 ~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~ 155 (408)
+..+++|+.| .++..||..+++........
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~ 368 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN 368 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCcc
Confidence 5788889888 36778888888876644443
No 425
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.55 E-value=8.6 Score=35.41 Aligned_cols=93 Identities=10% Similarity=0.101 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCceEEEEeCCCeEEEEEcC---------CCceecccccccccccCCCCcccccc-ccceeEEEEEccCC
Q 015363 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMR---------QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNG 353 (408)
Q Consensus 284 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~spdg 353 (408)
.|..+..+|.| ..++-.+.+|.+.++=-+ .++.... .+++.-. ..+|.. -.-.+..++|+|+.
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~-CRt~~i~-----~~~ftss~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVN-CRTTPVA-----ERFFTSSTSLTLKQAAWHPSS 177 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEE-EEeeccc-----ceeeccCCceeeeeccccCCc
Confidence 46778899999 777777788876665322 1211000 0111111 111111 12357789999965
Q ss_pred ----CEEEEeCCCeEEEEECCCCCCceeeeeeccc
Q 015363 354 ----RHILSRDYMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 354 ----~~l~s~~d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
.+++-.+|..|++||+... ..+....+..+
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~-telylqpgepg 211 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEP-TELYLQPGEPG 211 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCc-chhhccCCCcC
Confidence 4555568899999999874 44444444433
No 426
>PRK10115 protease 2; Provisional
Probab=89.13 E-value=25 Score=34.80 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=63.9
Q ss_pred cceEEEEeCCCCCEEEEe-c-----CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCC---
Q 015363 234 YHINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--- 304 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--- 304 (408)
..+..+.++|++++|+.+ + ...|++.|+.++...... +.. .-..++|.+++ +.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-------i~~---~~~~~~w~~D~-~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-------LDN---VEPSFVWANDS-WTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-------ccC---cceEEEEeeCC-CEEEEEEecCCC
Confidence 346778899999999876 2 236788888744321111 221 11469999999 555544332
Q ss_pred ---CeEEEEEcCCCceecccccccccccCCCCccccccccceeE-EEEEccCCCEEEEe--C--CCeEEEEECC
Q 015363 305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR--D--YMTLKLWDIN 370 (408)
Q Consensus 305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~spdg~~l~s~--~--d~~v~~wd~~ 370 (408)
..|+.+++.++...+. ..++... .... .+..+.|+++++.. + ++.+.+++..
T Consensus 196 ~~~~~v~~h~lgt~~~~d~--lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDE--LVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCEEEEEECCCChhHCe--EEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 3677788877632111 2233221 1122 33344488876643 2 3789999954
No 427
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.97 E-value=0.11 Score=46.55 Aligned_cols=136 Identities=9% Similarity=0.035 Sum_probs=85.4
Q ss_pred eeEEccCCCeeecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe--cC
Q 015363 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (408)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d 253 (408)
...|-+++..+ +.+..+..+..|| -.. +..-. .......-.++|+.++..++.. ..
T Consensus 39 ~~~w~~e~~nl------------avaca~tiv~~YD-~ag-------q~~le--~n~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 39 IHRWRPEGHNL------------AVACANTIVIYYD-KAG-------QVILE--LNPTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred eeeEecCCCce------------ehhhhhhHHHhhh-hhc-------ceecc--cCCchhHhhhhhccccchhhhhhhcC
Confidence 45677777666 7777788888888 111 11000 1122344567888888777664 78
Q ss_pred CeEEEEeCCCCCceeeEeecCCCcccC-CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC
Q 015363 254 LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (408)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (408)
+.+.+||+.+. ...++ .+.+ |.. .-+.|++-. ..++.+...+.+.|++..+.+.. ... |
T Consensus 97 ~piylwd~n~e-ytqqL------E~gg~~s~--sll~wsKg~-~el~ig~~~gn~viynhgtsR~i----iv~-G----- 156 (615)
T KOG2247|consen 97 GPIYLWDVNSE-YTQQL------ESGGTSSK--SLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRI----IVM-G----- 156 (615)
T ss_pred CCeeechhhhh-hHHHH------hccCcchH--HHHhhccCC-ccccccccccceEEEeccchhhh----hhh-c-----
Confidence 99999999832 22111 0111 222 227889888 78888888999999998876432 111 2
Q ss_pred CccccccccceeEEEEEccCCCEEEEe
Q 015363 333 TRSFFTEIIASISDIKFARNGRHILSR 359 (408)
Q Consensus 333 ~~~~~~~h~~~i~~~~~spdg~~l~s~ 359 (408)
.|..++.+++|.+.+..+..+
T Consensus 157 ------kh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 157 ------KHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred ------ccccceeEEEecccceeeecC
Confidence 135788999999877655543
No 428
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.97 E-value=18 Score=33.08 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=36.2
Q ss_pred cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC
Q 015363 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 294 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 294 (408)
+++..+++||+++++|.- .+|.+.+.+.+-. +.+..+++ . -......|.|.-+.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~-----~-~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDT-----D-SKSPPKQMAWCGND 271 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeec-----C-cCCCCcEEEEECCC
Confidence 579999999999999987 8899999887633 33322221 1 12344567776544
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.79 E-value=11 Score=30.42 Aligned_cols=153 Identities=12% Similarity=0.176 Sum_probs=79.0
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-c---CC---eEEEE-eCCC---CCce
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DL---RINLW-NLEI---SNQS 267 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---d~---~i~iw-d~~~---~~~~ 267 (408)
+.+.....|.+|+ +...+. ..+..+ .--+.|..+..+..|+++++- . .. .+++| +.+. ....
T Consensus 32 fva~~g~~Vev~~-l~~~~~----~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 32 FVAASGCKVEVYD-LEQEEC----PLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred EEEcCCCEEEEEE-cccCCC----ceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 4446667799999 542211 122222 222778999999999999985 2 22 45664 2221 1111
Q ss_pred ee--Eee--cCCC------------cccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceeccc--cccccccc
Q 015363 268 FN--IVD--VKPA------------NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--SKLFEEQE 329 (408)
Q Consensus 268 ~~--~~~--~~~~------------~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~ 329 (408)
.. +.. ..+. .++ -...+.+++..|...+++ .|+ ++++.||.+......... +-.|+.+
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~- 180 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDFERS- 180 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEechhh-
Confidence 11 111 0000 011 134556777777653544 443 678999988755321110 0111111
Q ss_pred CCCCcccccccc-ceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363 330 APGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 330 ~~~~~~~~~~h~-~~i~~~~~spdg~~l~s~~d~~v~~wd~~ 370 (408)
.+.-|. ..+..+++. +.|+|..++..++++.+.
T Consensus 181 ------l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 181 ------LIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ------hhheecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 111111 235566664 679998888888888763
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.68 E-value=15 Score=31.81 Aligned_cols=117 Identities=12% Similarity=0.199 Sum_probs=61.9
Q ss_pred cccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (408)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 311 (408)
-..+|..+.|.|++.+.+.+..|.|++=+.......... .+. .+....-.+..++|.+++ .+.|+|+ .|.+ +..
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~-~~~--~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S 258 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE-PII--PIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVS 258 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE----B---TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEE
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc-ccC--CcccCceeeEEEEecCCC-CEEEEeC-CccE-EEe
Confidence 346799999999998888778888888772212222111 000 111223447899999998 7777665 4443 344
Q ss_pred cCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEE
Q 015363 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 367 (408)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~w 367 (408)
...++. ++.... .....+.+..+.|.++.+-++.|.+|.|.=|
T Consensus 259 ~DgGkt-------W~~~~~------~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGKT-------WQKDRV------GENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSTTSS--------EE-GG------GTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCCcc-------ceECcc------ccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 555532 111100 0000245788999888888899999887655
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.57 E-value=0.74 Score=44.70 Aligned_cols=97 Identities=13% Similarity=0.271 Sum_probs=59.5
Q ss_pred cCcccceeeecccCcCcccce----eeccceEEEEECC---CCCeEEEeecCCeEEEEEeCCCCCCCCcccccccccccc
Q 015363 12 AQPLEWKFSQVFGERTAGEEV----QEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSM 84 (408)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~----~h~~~V~~~~~s~---~~~~l~sg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 84 (408)
+..+.|+....-|+-...-++ .-...+.-+.|.| +.-++..+-.++.|++..+++...
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--------------- 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--------------- 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---------------
Confidence 456778888754543322111 1223345556665 567888888999999888765431
Q ss_pred cCCCccceeeeeccCCcccccccccccccceeEEEEe---------ecCCCcEEEEEeCCCeEEEEEcC
Q 015363 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC---------QSANSALYLLSTNDKTIKLWKVQ 144 (408)
Q Consensus 85 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~v~~~---------p~~~~~~l~~~~~d~~i~vwd~~ 144 (408)
..+.+|. ..+..++|. -++||+.|+.+..||.++.|.+.
T Consensus 218 ---------~l~rsHs------------~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 218 ---------SLFRSHS------------QRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ---------HHHHhcC------------CCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 2345565 333333321 14568899999999999888764
No 432
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.34 E-value=8.4 Score=28.44 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=63.5
Q ss_pred EeCCCCCEEEEe-cCCeEEEEeCCCCCc-------eeeEeecCCCcccCCcCCeEEEEEcC---C-CCceEEEEeCCCeE
Q 015363 240 SNNSDGETFISA-DDLRINLWNLEISNQ-------SFNIVDVKPANMEDLTEVITSAEFHP---T-HCNMLAYSSSKGSI 307 (408)
Q Consensus 240 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p---~-~~~~l~s~~~dg~i 307 (408)
.|......|+++ .-++|.|++...... .+..+ .-...|++++-.| + +...|+.|+ ...|
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--------Nin~~italaaG~l~~~~~~D~LliGt-~t~l 75 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--------NINQEITALAAGRLKPDDGRDCLLIGT-QTSL 75 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--------ECCCceEEEEEEecCCCCCcCEEEEec-cceE
Confidence 455566677777 788888888663321 12222 1245567765443 2 235677665 5678
Q ss_pred EEEEcCCCceecccccccccccCCCCccccccccceeEEEEEcc----CCCEEEEeCCCeEEEEECC
Q 015363 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR----NGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp----dg~~l~s~~d~~v~~wd~~ 370 (408)
..||+.....+ ..-+ -...|+++.+-. +..+++.|+...|.-||..
T Consensus 76 laYDV~~N~d~----Fyke-------------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 76 LAYDVENNSDL----FYKE-------------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred EEEEcccCchh----hhhh-------------CccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 99999887532 1111 124677776632 4567777878888888875
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.64 E-value=17 Score=31.18 Aligned_cols=249 Identities=8% Similarity=0.044 Sum_probs=115.2
Q ss_pred eeEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-----cEEEEeccCCCC---cccCCCCCeEeecCCceeeEEccCCCee
Q 015363 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEK-----KVKKVFDWNVHP---EKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (408)
Q Consensus 115 v~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (408)
-..|+++|. +.+-++...-+...+||.... ....+......+ ....+. .+.|+......
T Consensus 25 ~WGia~~p~--~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PT-----------GiVfN~~~~F~ 91 (336)
T TIGR03118 25 AWGLSYRPG--GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPT-----------GQVFNGSDTFV 91 (336)
T ss_pred cceeEecCC--CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCcc-----------EEEEeCCCceE
Confidence 457889765 667777777888999998711 111112211111 111122 23333322221
Q ss_pred ecccccccCccccCCCCCceeeeceeeeccccccccccceeeccccccce-EEEEeC--CCCCEEEEe--cCCeEEEEeC
Q 015363 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI-NSISNN--SDGETFISA--DDLRINLWNL 261 (408)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~--~~~~~l~~~--~d~~i~iwd~ 261 (408)
..-.+.+....++-++++|+|.-|. -.-........ ...+.......| ..+++. ..+.+|..+ ..++|.+||-
T Consensus 92 vt~~g~~~~a~Fif~tEdGTisaW~-p~v~~t~~~~~-~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 92 VSGEGITGPSRFLFVTEDGTLSGWA-PALGTTRMTRA-EIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred EcCCCcccceeEEEEeCCceEEeec-CcCCccccccc-EEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 1111111112235678999999887 21111100000 011101111222 344544 346777776 7999999987
Q ss_pred CCCCceeeEeecCCCcccCCcCC-----------eEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccC
Q 015363 262 EISNQSFNIVDVKPANMEDLTEV-----------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (408)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~-----------v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (408)
. -.+...--.+....+...-.+ |+-..-.++. +.=+.|..-|.|-+||+... .+ +.+...
T Consensus 170 ~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~-l~----~r~as~-- 240 (336)
T TIGR03118 170 S-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQ-LL----RRVASS-- 240 (336)
T ss_pred c-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCc-EE----EEeccC--
Confidence 6 222110000000011111111 1111112222 22233344578999998643 33 222111
Q ss_pred CCCccccccccceeEEEEEcc------CCCEEEEe-CCCeEEEEECCCCCCceeeeeeccc---ccceEEecCCCe
Q 015363 331 PGTRSFFTEIIASISDIKFAR------NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEH---LRPKVMHSSKNY 396 (408)
Q Consensus 331 ~~~~~~~~~h~~~i~~~~~sp------dg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 396 (408)
+.-...+.|+..| .|.+|+.- .||+|..||..+ ++.+-.+....+ ...-|+.+..+.
T Consensus 241 --------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s-G~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 241 --------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS-GAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred --------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC-CceeeeecCCCCCeEEecCeEEeeeCC
Confidence 1123456777765 46666655 689999999987 565555544333 355555554444
No 434
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.49 E-value=24 Score=31.74 Aligned_cols=111 Identities=9% Similarity=0.091 Sum_probs=54.6
Q ss_pred cceEEEEeCCCCCEEEEe-c-----------C-CeEEEEeCCCC-Cce--eeEeecCCCcccCCcCCeEEEEEcCCCCce
Q 015363 234 YHINSISNNSDGETFISA-D-----------D-LRINLWNLEIS-NQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNM 297 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~-----------d-~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 297 (408)
.....|+|.++|+++++. . . ..|.+++-... ++. ..+ +.......+.+++.+++ +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG--V 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC--E
Confidence 346688999999988874 1 1 26766654322 221 122 22223345789998887 4
Q ss_pred EEEEeCCCeEEEEEcCCCceeccccccc-ccccCCCCccccccccceeEEEEEccCCCEEEEe
Q 015363 298 LAYSSSKGSIRLIDMRQSALCDTHSKLF-EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (408)
Q Consensus 298 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~ 359 (408)
+++ +.....++.|.......+.....+ .+-... -..+......++|.|||.+.++-
T Consensus 85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~~ 141 (367)
T TIGR02604 85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFNH 141 (367)
T ss_pred EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEec
Confidence 443 334333344543221111000111 111000 00012347789999999876653
No 435
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.39 E-value=30 Score=34.75 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=76.7
Q ss_pred cccceEEEEeC---C----CCCEEEEecCCeEEEEeCCCCCc------eeeEeecCC-Cccc---CCcCCeEEEEEcCCC
Q 015363 232 HDYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANME---DLTEVITSAEFHPTH 294 (408)
Q Consensus 232 ~~~~v~~i~~~---~----~~~~l~~~~d~~i~iwd~~~~~~------~~~~~~~~~-~~~~---~~~~~v~~~~~~p~~ 294 (408)
...+|..|+|. . ..++|++-....+.|+...-... ....++..+ .++. ....+...++|+|..
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 34667777777 2 22455555667777777221111 000000000 0011 123445789999987
Q ss_pred CceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCC
Q 015363 295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD 372 (408)
Q Consensus 295 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~ 372 (408)
...||.....|...||++............+..........=..++ +.-..+.|.++-..|+.++...+.++|+++.
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~-s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~ 234 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEEL-SNWKRILWVSDSNRLLVCNRSKLMLIDFESN 234 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCccc-CcceeeEecCCCCEEEEEcCCceEEEECCCC
Confidence 7899999999999999993221110000111111000000000111 3445789999988999998889999999873
No 436
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.59 E-value=25 Score=31.04 Aligned_cols=164 Identities=11% Similarity=0.148 Sum_probs=81.9
Q ss_pred cceEEEEeCC-CCCEEEEecCCe------EEEEeCCCCC---ceeeE---eecCCC---cccCCcCCeEEEEEcCCCCce
Q 015363 234 YHINSISNNS-DGETFISADDLR------INLWNLEISN---QSFNI---VDVKPA---NMEDLTEVITSAEFHPTHCNM 297 (408)
Q Consensus 234 ~~v~~i~~~~-~~~~l~~~~d~~------i~iwd~~~~~---~~~~~---~~~~~~---~~~~~~~~v~~~~~~p~~~~~ 297 (408)
+.+..+.+.+ ++.+++.++++. +..+++.... ..... ..++.. .+.......-+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 5678888985 455555556666 6555555311 11111 111100 011011133478887777 77
Q ss_pred EEEEeCC------CeEEEEEcCCCceecccccccccccCC--CCc-cccccccceeEEEEEccCCCEEEEe------CCC
Q 015363 298 LAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAP--GTR-SFFTEIIASISDIKFARNGRHILSR------DYM 362 (408)
Q Consensus 298 l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~h~~~i~~~~~spdg~~l~s~------~d~ 362 (408)
+++.-.+ ..|..++.. +... ..+.-+... ... ..-........+|+++|||+.|+++ .|+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 7777667 788888876 5432 122111000 000 0011123578999999999965543 232
Q ss_pred --e-------EEEEECC--CCCCceeeeeeccc---------ccceEEecCCCeeeeeece
Q 015363 363 --T-------LKLWDIN--MDSGPVATFQVHEH---------LRPKVMHSSKNYFMGLDNI 403 (408)
Q Consensus 363 --~-------v~~wd~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~ 403 (408)
. ++++..+ +.+.+.+.+...-. ....+..+-++.++.+.|.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence 2 5555554 32333444333221 2344555666667776665
No 437
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.49 E-value=19 Score=31.80 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=67.5
Q ss_pred eEEEEeCCCCCEEEEe-cC------CeEEEEeCCCCCceeeEeecCCC--------cccCCcCCeEEEEEcCCCCceEEE
Q 015363 236 INSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPA--------NMEDLTEVITSAEFHPTHCNMLAY 300 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~s 300 (408)
.-+|++.+++.++++. .+ ..|..++.. + .....+.+... .-...+..+-+|+++|+| +.|.+
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~ 163 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFA 163 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEE
Confidence 4466777888888887 67 788888876 3 33333322110 112235668899999999 65555
Q ss_pred EeC-----CC--e-------EEEE--EcCC-CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-C--
Q 015363 301 SSS-----KG--S-------IRLI--DMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-- 360 (408)
Q Consensus 301 ~~~-----dg--~-------i~iw--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~-- 360 (408)
+.. |+ . ++|+ |..+ +.......+.+..... ......|..+.+-+++++|+-- +
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~-------~~~~~~isd~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT-------APGDNGISDIAALPDGRLLVLERDFS 236 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcccc-------ccCCCCceeEEEECCCcEEEEEccCC
Confidence 433 22 1 4454 4443 1111111111111000 0013578999999999988853 1
Q ss_pred ---CCeEEEEECC
Q 015363 361 ---YMTLKLWDIN 370 (408)
Q Consensus 361 ---d~~v~~wd~~ 370 (408)
...++|+.+.
T Consensus 237 ~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 237 PGTGNYKRIYRVD 249 (326)
T ss_pred CCccceEEEEEEE
Confidence 2455555544
No 438
>PHA02713 hypothetical protein; Provisional
Probab=84.48 E-value=30 Score=33.20 Aligned_cols=26 Identities=4% Similarity=0.125 Sum_probs=17.0
Q ss_pred CcEEEEEeCC------CeEEEEEcCCCcEEEE
Q 015363 126 SALYLLSTND------KTIKLWKVQEKKVKKV 151 (408)
Q Consensus 126 ~~~l~~~~~d------~~i~vwd~~~~~~~~~ 151 (408)
+..++.|+.+ ..+..||..++.....
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~ 335 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVEL 335 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeC
Confidence 5677777753 3477788887765443
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.43 E-value=0.21 Score=44.82 Aligned_cols=140 Identities=9% Similarity=0.092 Sum_probs=87.1
Q ss_pred EEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCc
Q 015363 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (408)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (408)
...|-| ++.-++.++.+..+..||-........ .. .+.. ..++|..++..+
T Consensus 39 ~~~w~~--e~~nlavaca~tiv~~YD~agq~~le~-n~---------tg~a-------ldm~wDkegdvl---------- 89 (615)
T KOG2247|consen 39 IHRWRP--EGHNLAVACANTIVIYYDKAGQVILEL-NP---------TGKA-------LDMAWDKEGDVL---------- 89 (615)
T ss_pred eeeEec--CCCceehhhhhhHHHhhhhhcceeccc-CC---------chhH-------hhhhhccccchh----------
Confidence 445644 455688888888999888654432221 11 1111 146666666654
Q ss_pred cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCC
Q 015363 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (408)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (408)
++.+...+.+.+|+ +......... +-..|.... +.|++....++.+ ..+.+.+++..+.+....
T Consensus 90 -avlAek~~piylwd-~n~eytqqLE-----~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv------ 154 (615)
T KOG2247|consen 90 -AVLAEKTGPIYLWD-VNSEYTQQLE-----SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV------ 154 (615)
T ss_pred -hhhhhcCCCeeech-hhhhhHHHHh-----ccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhh------
Confidence 46677889999999 5442221110 001122222 6799999999999 899999999987665543
Q ss_pred CcccCCcCCeEEEEEcCCCCceEEEEeCC
Q 015363 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (408)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 304 (408)
...|...++++++.+.+ + .+.++.|
T Consensus 155 --~Gkh~RRgtq~av~lEd-~-vil~dcd 179 (615)
T KOG2247|consen 155 --MGKHQRRGTQIAVTLED-Y-VILCDCD 179 (615)
T ss_pred --hcccccceeEEEecccc-e-eeecCcH
Confidence 23388889999999987 4 4444433
No 440
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.39 E-value=34 Score=31.64 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=25.2
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeCCC
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~ 67 (408)
-+.-+.|+|.|||++|++--..|.|++++-.+.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 455789999999987776654699999975543
No 441
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.98 E-value=5.2 Score=22.25 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=23.4
Q ss_pred cCCCEEEEeC--CCeEEEEECCCCCCceeeeeec
Q 015363 351 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 351 pdg~~l~s~~--d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
|++++|+++. +++|.++|..+ ++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECC
Confidence 6788777763 48999999987 6777777653
No 442
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.97 E-value=4.6 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=17.9
Q ss_pred CcCCeEEEEEcCCCCceEEEEeCC--CeEEEE
Q 015363 281 LTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 310 (408)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~s~~~d--g~i~iw 310 (408)
....-....|+|||..++.+...+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567899999994444444445 555555
No 443
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.36 E-value=7.7 Score=37.12 Aligned_cols=75 Identities=8% Similarity=0.083 Sum_probs=40.7
Q ss_pred CCCCEEEEe-cCCeEEEEeCCC---CCceeeEeecCCC-------cc--------cCCcCCeEEEEEcC----CCCceEE
Q 015363 243 SDGETFISA-DDLRINLWNLEI---SNQSFNIVDVKPA-------NM--------EDLTEVITSAEFHP----THCNMLA 299 (408)
Q Consensus 243 ~~~~~l~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~-------~~--------~~~~~~v~~~~~~p----~~~~~l~ 299 (408)
++...++.+ .||.+....... .+........... .+ ......+..+++++ +. .+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence 456667777 888888777664 2222222111110 00 01123455666666 44 7899
Q ss_pred EEeCCCeEEEEEcCCCcee
Q 015363 300 YSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 300 s~~~dg~i~iwd~~~~~~~ 318 (408)
+.+.|+++|+||+.++..+
T Consensus 235 tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EEETTSEEEEEETTTTCEE
T ss_pred EEeCCCeEEEEECCCCeEE
Confidence 9999999999999999763
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=82.91 E-value=42 Score=31.55 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=17.2
Q ss_pred CcEEEEEeCC--CeEEEEEcCCCcEEEE
Q 015363 126 SALYLLSTND--KTIKLWKVQEKKVKKV 151 (408)
Q Consensus 126 ~~~l~~~~~d--~~i~vwd~~~~~~~~~ 151 (408)
+...+.|+.+ .++..||..+++....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 6677777754 3577788777665544
No 445
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.26 E-value=37 Score=30.47 Aligned_cols=113 Identities=11% Similarity=0.109 Sum_probs=66.3
Q ss_pred ccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc-eeeEee-cC
Q 015363 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFNIVD-VK 274 (408)
Q Consensus 198 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~-~~ 274 (408)
++....+|.+..|.+....+.....+.++.+.. ...+..+........|..+ ++.-|.-|+.+.... ....+. ..
T Consensus 174 a~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~ 251 (381)
T PF02333_consen 174 AFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD 251 (381)
T ss_dssp EEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS
T ss_pred EEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc
Confidence 477788899999983333444455566666522 3468888888888889989 888888888763221 112221 11
Q ss_pred CCcccCCcCCeEEEEEc--CCCC-ceEEEEeCCCeEEEEEcCCC
Q 015363 275 PANMEDLTEVITSAEFH--PTHC-NMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 275 ~~~~~~~~~~v~~~~~~--p~~~-~~l~s~~~dg~i~iwd~~~~ 315 (408)
-......|-.|+.- +++. .+|++.-.+++..+|+.+..
T Consensus 252 ---g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 252 ---GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ---SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ---ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 11223456666653 3432 45555555889999998754
No 446
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=81.81 E-value=62 Score=32.73 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=61.0
Q ss_pred EeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCC--CCc---eEEEEeCCCeEEEEEcC
Q 015363 240 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCN---MLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 240 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~---~l~s~~~dg~i~iwd~~ 313 (408)
+.+.+...++.+ .++.+...++...+ ..... ...-...|.|+.++|- +++ +++.|..+..+.+.-..
T Consensus 494 ~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 494 VVSANASQVVVAGGGLALFYLEIEDGG-LREVS------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred EEeecceEEEEecCccEEEEEEeeccc-eeeee------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 333344444444 66777777776333 22211 1223456889999976 333 88888876655544322
Q ss_pred -CCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CCCeEEEEECCC
Q 015363 314 -QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (408)
Q Consensus 314 -~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d~~v~~wd~~~ 371 (408)
..... ....+.+..- ...|.-..|-.|..+|.++ .||.+..|.++.
T Consensus 567 pd~~~~--~~~~l~~~~i----------PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 567 PDLILI--THEQLSGEII----------PRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred CCccee--eeeccCCCcc----------chheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 22111 0011111111 1345556666678888888 589988876654
No 447
>PHA03098 kelch-like protein; Provisional
Probab=81.58 E-value=50 Score=31.52 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=17.6
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCcEEEE
Q 015363 126 SALYLLSTND-----KTIKLWKVQEKKVKKV 151 (408)
Q Consensus 126 ~~~l~~~~~d-----~~i~vwd~~~~~~~~~ 151 (408)
+..++.|+.+ ..+..||..+++....
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 5677788765 3467788877766543
No 448
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.51 E-value=5.6 Score=22.10 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=19.1
Q ss_pred CCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 292 PTHCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 292 p~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
|++..++++...+++|.++|..+++.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 566345555556899999999877554
No 449
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=81.44 E-value=48 Score=31.24 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=24.5
Q ss_pred cEEEEEeCCCeEEEEEcCCCcEEEEeccC
Q 015363 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (408)
Q Consensus 127 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 155 (408)
..++.++.++.|.-+|.++++.+......
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 47888889999999999999988776654
No 450
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.04 E-value=13 Score=35.61 Aligned_cols=41 Identities=10% Similarity=0.296 Sum_probs=29.1
Q ss_pred eeEEEEee--cCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccC
Q 015363 115 INKIRWCQ--SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (408)
Q Consensus 115 v~~v~~~p--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 155 (408)
+..++..+ -.+..++++.+.|+++|+||+.++++.......
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 44455543 113468999999999999999999997766554
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.57 E-value=60 Score=31.75 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=28.0
Q ss_pred cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
...+..+..||+. ++|+--..+|.|.+-++...+
T Consensus 216 ~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 216 NSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred CceEEEEEEcCCc-ceEEEEecCCcEEEEecchhh
Confidence 4557789999999 899988899999998877653
No 452
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.54 E-value=6.1 Score=35.60 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=25.9
Q ss_pred ceEEEEeCCCCCEEEEecCCeEEEEeCCCCC
Q 015363 235 HINSISNNSDGETFISADDLRINLWNLEISN 265 (408)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~ 265 (408)
.+.-++++|.+.++++-+.|.++++.+++..
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 359 APQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred CcceeeeCcccchheeecCCceEEEEecCCC
Confidence 4567899999999998888999999888543
No 453
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.09 E-value=11 Score=34.68 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=53.2
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEeC---------CCCCCCCcccccccccccccCCCccceeeeeccCCccccc
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERT---------DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~---------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 105 (408)
.=.|..+..++.|..+|-.+.+|.+.++=.. +++.+..|+.. .-.-++.+.- .|
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~----------~i~~~~ftss-~~------ 165 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTT----------PVAERFFTSS-TS------ 165 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEee----------cccceeeccC-Cc------
Confidence 3457888999999999999999877664311 11110001100 0000011100 11
Q ss_pred ccccccccceeEEEEeecC--CCcEEEEEeCCCeEEEEEcCCCcEE
Q 015363 106 LKSLEIEEKINKIRWCQSA--NSALYLLSTNDKTIKLWKVQEKKVK 149 (408)
Q Consensus 106 ~~~~~~~~~v~~v~~~p~~--~~~~l~~~~~d~~i~vwd~~~~~~~ 149 (408)
-.+..++|+|+. | ..+..-+.|++||+|++......
T Consensus 166 -------ltl~Qa~WHP~S~~D-~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 166 -------LTLKQAAWHPSSILD-PHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred -------eeeeeccccCCccCC-ceEEEEecCcEEEEEecCCcchh
Confidence 237778999876 4 46777789999999999865433
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=79.56 E-value=44 Score=29.61 Aligned_cols=118 Identities=11% Similarity=0.064 Sum_probs=68.3
Q ss_pred ccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
...++++.+.++++.++++..|.+.+=..+ .+...+.... ........+..+.+.|++ .++++ +.+|.|.. ..
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~---~~~~~~~~l~~v~~~~~~-~~~~~-G~~G~v~~-S~ 286 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPII---PEITNGYGYLDLAYRTPG-EIWAG-GGNGTLLV-SK 286 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccC---CccccccceeeEEEcCCC-CEEEE-cCCCeEEE-eC
Confidence 356889999999998888877776532233 3333322110 001112347889999987 65555 45776553 34
Q ss_pred CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECC
Q 015363 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (408)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~ 370 (408)
..++.- ....... .-......+.|..+++.+++|..|.|.-|+=.
T Consensus 287 d~G~tW----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 287 DGGKTW----EKDPVGE---------EVPSNFYKIVFLDPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCCCCC----eECCcCC---------CCCcceEEEEEeCCCceEEECCCceEEEecCC
Confidence 444211 1111100 00135777888888888888888999887643
No 455
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.55 E-value=33 Score=28.22 Aligned_cols=98 Identities=12% Similarity=0.172 Sum_probs=61.0
Q ss_pred eEEEEeCCCCCEEEEe--cCCeEEEEe--CCCCCc--eeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEE
Q 015363 236 INSISNNSDGETFISA--DDLRINLWN--LEISNQ--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~--~d~~i~iwd--~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 309 (408)
-+.++|+.+.+.+..- -+-.|.-|| ..++.- ...+++++..+-.++.. .-.++..-+| .++++.-+.++|..
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~ID~eG-~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMTIDTEG-NLYVATFNGGTVQK 237 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcceEccCC-cEEEEEecCcEEEE
Confidence 3578899888877765 467777787 332211 12223332211111111 1245556688 88888888999999
Q ss_pred EEcCCCceecccccccccccCCCCccccccccceeEEEEEcc
Q 015363 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
.|..+|+.+ .++.-+ +..|++++|--
T Consensus 238 ~dp~tGK~L----~eiklP------------t~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKIL----LEIKLP------------TPQITSCCFGG 263 (310)
T ss_pred ECCCCCcEE----EEEEcC------------CCceEEEEecC
Confidence 999999876 444444 25799999974
No 456
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=77.92 E-value=41 Score=28.39 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=98.3
Q ss_pred eEEEEECCCCCeEEEeecCC--eEEEEEeCCCCCCCCcccccccccccccCCCccceeeeeccCCcccccccccccccce
Q 015363 38 ISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (408)
Q Consensus 38 V~~~~~s~~~~~l~sg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (408)
...+.|..+|.++-+.+.-| .|+.+|+.+++.. ....+...- --
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~---------------------~~~~l~~~~-------------Fg 92 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL---------------------QSVPLPPRY-------------FG 92 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE---------------------EEEE-TTT---------------E
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE---------------------EEEECCccc-------------cc
Confidence 45678877888877777666 6888888877531 011111110 01
Q ss_pred eEEEEeecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccC
Q 015363 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (408)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (408)
-.++.. ++..+...=.++...+||..+-+....+.... .|+ .++ .+++.+
T Consensus 93 EGit~~---~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~-------EGW---------GLt--~dg~~L--------- 142 (264)
T PF05096_consen 93 EGITIL---GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG-------EGW---------GLT--SDGKRL--------- 142 (264)
T ss_dssp EEEEEE---TTEEEEEESSSSEEEEEETTTTEEEEEEE-SS-------S-----------EEE--ECSSCE---------
T ss_pred eeEEEE---CCEEEEEEecCCeEEEEccccceEEEEEecCC-------cce---------EEE--cCCCEE---------
Confidence 123331 23455556678899999999888777766542 122 223 455554
Q ss_pred ccccCCCCCceeeeceeeeccccccccccceee-ccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeec
Q 015363 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (408)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 273 (408)
+.......+..+| ....+.. ..+... ....-..++.+.+- +|.+.|=. ....|...|.. .+.....+++
T Consensus 143 ---i~SDGS~~L~~~d-P~~f~~~---~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~-tG~V~~~iDl 213 (264)
T PF05096_consen 143 ---IMSDGSSRLYFLD-PETFKEV---RTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE-TGKVVGWIDL 213 (264)
T ss_dssp ---EEE-SSSEEEEE--TTT-SEE---EEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETT-T-BEEEEEE-
T ss_pred ---EEECCccceEEEC-CcccceE---EEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC-CCeEEEEEEh
Confidence 4445555666655 2221110 000000 01111345556664 56555555 66777777887 4555555543
Q ss_pred CCCc--------ccCCcCCeEEEEEcCCCCceEEEEe
Q 015363 274 KPAN--------MEDLTEVITSAEFHPTHCNMLAYSS 302 (408)
Q Consensus 274 ~~~~--------~~~~~~~v~~~~~~p~~~~~l~s~~ 302 (408)
.... ......-.+.|+++|....++++|-
T Consensus 214 s~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 214 SGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred hHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 2210 0111355789999998867777774
No 457
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=76.93 E-value=86 Score=31.53 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=48.7
Q ss_pred ccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeE----eecC------C--CcccCCcCCeEEEEEcCCCCceEE
Q 015363 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI----VDVK------P--ANMEDLTEVITSAEFHPTHCNMLA 299 (408)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~----~~~~------~--~~~~~~~~~v~~~~~~p~~~~~l~ 299 (408)
.+.|.+++...-+..++.. .||+|.++|-.+.+..... .+.. . ..++. -..+..++|||++ ..++
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~-~~~~~~vafSPt~-c~~v 336 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPC-IQPPLHVAFSPTM-CSLV 336 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccccc-CCCCceEEECccc-ceEE
Confidence 3567888877778888888 9999999998865443322 0000 0 01111 1134468899999 7888
Q ss_pred EEeCCCeEE
Q 015363 300 YSSSKGSIR 308 (408)
Q Consensus 300 s~~~dg~i~ 308 (408)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 888888866
No 458
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.53 E-value=80 Score=30.95 Aligned_cols=137 Identities=13% Similarity=0.150 Sum_probs=71.6
Q ss_pred ceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEE-EEcC
Q 015363 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL-IDMR 313 (408)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i-wd~~ 313 (408)
.+-.+.|+.+..++....+|++++|++- +.. .+... ...+.....|..+.+..+| -.+++ .+|++.+ -+..
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~-ie~~s---vg~e~~~~~I~ec~~f~~G-Vavlt--~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL-GEF-IESNS---VGFESQMSDIVECRFFHNG-VAVLT--VSGQVILINGVE 156 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc-hhh-hcccc---cccccccCceeEEEEecCc-eEEEe--cCCcEEEEcCCC
Confidence 6778999998888877799999999987 222 11100 0122233445555555566 32222 3343333 2222
Q ss_pred CCce----------e-cccccccccccCCC---------------------CccccccccceeEEEEEccCCCEEEEeC-
Q 015363 314 QSAL----------C-DTHSKLFEEQEAPG---------------------TRSFFTEIIASISDIKFARNGRHILSRD- 360 (408)
Q Consensus 314 ~~~~----------~-~~~~~~~~~~~~~~---------------------~~~~~~~h~~~i~~~~~spdg~~l~s~~- 360 (408)
.... . ..+...+..|.... -...+..-.+.+..+..||+.++|+-=.
T Consensus 157 ~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 157 EPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred cchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence 1100 0 00001111110000 0000111124577889999999998764
Q ss_pred CCeEEEEECCCCCCceeeee
Q 015363 361 YMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 361 d~~v~~wd~~~~~~~~~~~~ 380 (408)
.|.|.+-+.+. .+.+..+.
T Consensus 237 ~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 237 TGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred CCcEEEEecch-hhhhhccC
Confidence 58998888876 56666665
No 459
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=76.20 E-value=9.9 Score=25.90 Aligned_cols=43 Identities=9% Similarity=0.137 Sum_probs=27.0
Q ss_pred EeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC
Q 015363 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (408)
Q Consensus 301 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~ 360 (408)
+..+|++..||..+++.. ..+.+- ...+.|++++|+.+|+.+.
T Consensus 33 ~~~~GRll~ydp~t~~~~----vl~~~L-------------~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETT----VLLDGL-------------YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEE----EEEEEE-------------SSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEE----EehhCC-------------CccCeEEEcCCCCEEEEEe
Confidence 345678888999887541 122222 3568899999999888873
No 460
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=75.72 E-value=49 Score=28.08 Aligned_cols=221 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred ecCCCcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCC
Q 015363 122 QSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201 (408)
Q Consensus 122 p~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (408)
|.++|..-.++...+.|--.|..+++.... -...+..+..+..-|||..- ++-
T Consensus 69 papdG~VWft~qg~gaiGhLdP~tGev~~y---------------pLg~Ga~Phgiv~gpdg~~W------------itd 121 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPATGEVETY---------------PLGSGASPHGIVVGPDGSAW------------ITD 121 (353)
T ss_pred cCCCCceEEecCccccceecCCCCCceEEE---------------ecCCCCCCceEEECCCCCee------------Eec
Q ss_pred CCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCC
Q 015363 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (408)
Q Consensus 202 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (408)
+.....++ .......+....-...-........|.+.|++.+++..|.---.|-. ...++++ -...
T Consensus 122 ~~~aI~R~------dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa--~~~i~vf------paPq 187 (353)
T COG4257 122 TGLAIGRL------DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPA--RNVISVF------PAPQ 187 (353)
T ss_pred CcceeEEe------cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcc--cCceeee------ccCC
Q ss_pred cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCC
Q 015363 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (408)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d 361 (408)
....+.|+..|+| .+.++.-.+..|-..|..++.. ..+...+.. ...-..+--+|.|+.-++-..
T Consensus 188 G~gpyGi~atpdG-svwyaslagnaiaridp~~~~a-----ev~p~P~~~---------~~gsRriwsdpig~~wittwg 252 (353)
T COG4257 188 GGGPYGICATPDG-SVWYASLAGNAIARIDPFAGHA-----EVVPQPNAL---------KAGSRRIWSDPIGRAWITTWG 252 (353)
T ss_pred CCCCcceEECCCC-cEEEEeccccceEEcccccCCc-----ceecCCCcc---------cccccccccCccCcEEEeccC
Q ss_pred -CeEEEEECCCCCCceeeeeecccccceEEecCCCeeeeeeceeeec
Q 015363 362 -MTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMGLDNIHTLY 407 (408)
Q Consensus 362 -~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 407 (408)
+.+..||-.+ .....++-... --..+-|.+|+..++|
T Consensus 253 ~g~l~rfdPs~--~sW~eypLPgs-------~arpys~rVD~~grVW 290 (353)
T COG4257 253 TGSLHRFDPSV--TSWIEYPLPGS-------KARPYSMRVDRHGRVW 290 (353)
T ss_pred CceeeEeCccc--ccceeeeCCCC-------CCCcceeeeccCCcEE
No 461
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.88 E-value=54 Score=28.18 Aligned_cols=56 Identities=9% Similarity=0.196 Sum_probs=38.4
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEe------CCCeEEEEEcCCCce
Q 015363 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS------SKGSIRLIDMRQSAL 317 (408)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~ 317 (408)
-..|++||.. ..+-... -.+-.+.|+.|.|..+. ++++.|. ....+..||..+...
T Consensus 15 C~~lC~yd~~-~~qW~~~-------g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTD-NSQWSSP-------GNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECC-CCEeecC-------CCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCee
Confidence 3468999988 3333221 23356789999998666 7888775 356788899887643
No 462
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=73.35 E-value=68 Score=29.88 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=44.0
Q ss_pred eEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC
Q 015363 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 313 (408)
..+..-... .++|.+ ..|-|++||.- +..... .+++....|..+....+| .++++.+ ...+.+-|++
T Consensus 565 Fss~~tTes-GyIa~as~kGDirLyDRi-g~rAKt-------alP~lG~aIk~idvta~G-k~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 565 FSSGMTTES-GYIAAASRKGDIRLYDRI-GKRAKT-------ALPGLGDAIKHIDVTANG-KHILATC-KNYLLLTDVP 632 (776)
T ss_pred ccccccccC-ceEEEecCCCceeeehhh-cchhhh-------cCcccccceeeeEeecCC-cEEEEee-cceEEEEecc
Confidence 334433333 467776 89999999975 332222 256777889999999999 5554443 4567777765
No 463
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=72.80 E-value=58 Score=27.57 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=68.4
Q ss_pred ceEEEEeCCCCCEEEE-e--cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363 235 HINSISNNSDGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (408)
Q Consensus 235 ~v~~i~~~~~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 311 (408)
-...+.|..++.++-+ | ....|+.+|+.++ +.....++.+.-+ --.+....+ .+..-.=.++...+||
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg-~~~~~~~l~~~~F------gEGit~~~d--~l~qLTWk~~~~f~yd 116 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG-KVLQSVPLPPRYF------GEGITILGD--KLYQLTWKEGTGFVYD 116 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS-SEEEEEE-TTT--------EEEEEEETT--EEEEEESSSSEEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCC-cEEEEEECCcccc------ceeEEEECC--EEEEEEecCCeEEEEc
Confidence 3557888777777665 4 4668999999954 4444433322111 123444433 4555566789999999
Q ss_pred cCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC-CCeEEEEECCCCCCceeeeeec
Q 015363 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (408)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~ 382 (408)
..+.+.. ..+.-. +.=+.++ .||+.|+.++ ...+.++|-.+ -+..+.+...
T Consensus 117 ~~tl~~~----~~~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~ 168 (264)
T PF05096_consen 117 PNTLKKI----GTFPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVT 168 (264)
T ss_dssp TTTTEEE----EEEE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-E
T ss_pred cccceEE----EEEecC-------------CcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEE
Confidence 9987654 333322 1224455 4666666663 47999999876 4556555544
No 464
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.70 E-value=36 Score=25.24 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=44.4
Q ss_pred ccceEEEEeCC-----CCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCC--CceEEEEeCCC
Q 015363 233 DYHINSISNNS-----DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CNMLAYSSSKG 305 (408)
Q Consensus 233 ~~~v~~i~~~~-----~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg 305 (408)
...|++++-.+ +...|+.|....+..||+......+ ...-...|.++.+-.-+ +.-++..+.+.
T Consensus 47 n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F---------yke~~DGvn~i~~g~~~~~~~~l~ivGGnc 117 (136)
T PF14781_consen 47 NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF---------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNC 117 (136)
T ss_pred CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh---------hhhCccceeEEEEEecCCCCCcEEEECceE
Confidence 35566665433 3468888888899999998554443 22334667777663221 12344444567
Q ss_pred eEEEEEcCCC
Q 015363 306 SIRLIDMRQS 315 (408)
Q Consensus 306 ~i~iwd~~~~ 315 (408)
.|.-||....
T Consensus 118 si~Gfd~~G~ 127 (136)
T PF14781_consen 118 SIQGFDYEGN 127 (136)
T ss_pred EEEEeCCCCc
Confidence 7777776544
No 465
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.86 E-value=1.2e+02 Score=30.65 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=19.9
Q ss_pred ceEEEEeCCCeEEEEEcCCCcee
Q 015363 296 NMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 296 ~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
..++.++.|+.+.-.|.++++.+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEE
Confidence 46777888999999999999876
No 466
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=70.81 E-value=12 Score=18.86 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=20.2
Q ss_pred cceeEEEEeecCCCcEEEEEeCCCeEEEEE
Q 015363 113 EKINKIRWCQSANSALYLLSTNDKTIKLWK 142 (408)
Q Consensus 113 ~~v~~v~~~p~~~~~~l~~~~~d~~i~vwd 142 (408)
+.|.+++.. ..+++++.+-+.+|+|.
T Consensus 2 E~i~aia~g----~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG----DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc----CCEEEEEeCCCeEEecC
Confidence 348888874 23899999999999873
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=70.43 E-value=83 Score=28.38 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=101.1
Q ss_pred CcEEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCC--
Q 015363 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG-- 203 (408)
Q Consensus 126 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 203 (408)
.++++....++-+.+||+...+....-....+. |- +.--|.-+|+.+ +++++...
T Consensus 68 kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NN--------VD------vrygf~l~g~~v---------Dlavas~R~~ 124 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNN--------VD------VRYGFPLNGKTV---------DLAVASDRSD 124 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS-EEEEE-SS-EEE--------EE------EEEEEEETTEEE---------EEEEEEE-CC
T ss_pred cceEEEEeCCCCEEEEcCCCcEEEeecCCCcce--------ee------eecceecCCceE---------EEEEEecCcC
Confidence 557777889999999999987665442221111 00 001111223321 12233222
Q ss_pred -Cceeeeceeeecccccc--ccccceeeccccccceEEEEe--CC-CCCEEEE-e-cCCeEEEEeCCCCCc-eeeEeecC
Q 015363 204 -VSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISN--NS-DGETFIS-A-DDLRINLWNLEISNQ-SFNIVDVK 274 (408)
Q Consensus 204 -~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~--~~-~~~~l~~-~-~d~~i~iwd~~~~~~-~~~~~~~~ 274 (408)
...|++|. +....... .......+ ......++.+++ +| +|.+.+. . .+|.+.-|.+...+. .+.-..++
T Consensus 125 g~n~l~~f~-id~~~g~L~~v~~~~~p~-~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR 202 (381)
T PF02333_consen 125 GRNSLRLFR-IDPDTGELTDVTDPAAPI-ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVR 202 (381)
T ss_dssp CT-EEEEEE-EETTTTEEEE-CBTTC-E-E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEE
T ss_pred CCCeEEEEE-ecCCCCcceEcCCCCccc-ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEE
Confidence 24688887 54322111 11000000 111134566665 34 4555444 4 789898887753222 11111111
Q ss_pred CCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecc-cccccccccCCCCccccccccceeEEEEEcc--
Q 015363 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFAR-- 351 (408)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-- 351 (408)
.+.. ...+-.+...... ..|..+-++.-|.-|+......... .+....+. .....|..|++-.
T Consensus 203 --~f~~-~sQ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~----------~l~aDvEGlaly~~~ 268 (381)
T PF02333_consen 203 --EFKV-GSQPEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD----------GLVADVEGLALYYGS 268 (381)
T ss_dssp --EEE--SS-EEEEEEETTT-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS----------SB-S-EEEEEEEE-C
T ss_pred --EecC-CCcceEEEEeccc-CCEEEecCccEEEEEecCCCCCCcceeeeccccc----------ccccCccceEEEecC
Confidence 1221 3467788888777 7888898888787787764321100 01111111 1235677777753
Q ss_pred CCC-EEEEe--CCCeEEEEECCCCCCceeeeee
Q 015363 352 NGR-HILSR--DYMTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 352 dg~-~l~s~--~d~~v~~wd~~~~~~~~~~~~~ 381 (408)
+++ ||+++ .+++..+|+.......+-.|..
T Consensus 269 ~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 269 DGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp CC-EEEEEEEGGGTEEEEEESSTT--EEEEEEE
T ss_pred CCCeEEEEEcCCCCeEEEEecCCCCcccceEEe
Confidence 433 55544 4689999999864454555543
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=69.28 E-value=76 Score=27.49 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=38.1
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcC------CCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP------THCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
.-|.|.+||.. + +.++.+. ..+.-...+.|+..| .+ .+|+---.||+|..+|..+++.+
T Consensus 220 G~G~VdvFd~~-G-~l~~r~a-----s~g~LNaPWG~a~APa~FG~~sg-~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 220 GLGYVNVFTLN-G-QLLRRVA-----SSGRLNAPWGLAIAPESFGSLSG-ALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred CcceEEEEcCC-C-cEEEEec-----cCCcccCCceeeeChhhhCCCCC-CeEEeecCCceeEEecCCCCcee
Confidence 44789999998 3 3333221 223334456777755 34 66666667999999999988654
No 469
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=68.38 E-value=81 Score=27.49 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=47.5
Q ss_pred EEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEe-CC---
Q 015363 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY--- 361 (408)
Q Consensus 286 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~-~d--- 361 (408)
.+..|+ +| ++.++-+..|.+.-+|..+|+.. ++..++ +....++|. |.+++.| |-
T Consensus 206 hSPRWh-dg-rLwvldsgtGev~~vD~~~G~~e--~Va~vp---------------G~~rGL~f~--G~llvVgmSk~R~ 264 (335)
T TIGR03032 206 HSPRWY-QG-KLWLLNSGRGELGYVDPQAGKFQ--PVAFLP---------------GFTRGLAFA--GDFAFVGLSKLRE 264 (335)
T ss_pred cCCcEe-CC-eEEEEECCCCEEEEEcCCCCcEE--EEEECC---------------CCCccccee--CCEEEEEeccccC
Confidence 345665 34 67788888899999998877542 223333 335677776 7777655 21
Q ss_pred -----------------CeEEEEECCCCCCceeeeee
Q 015363 362 -----------------MTLKLWDINMDSGPVATFQV 381 (408)
Q Consensus 362 -----------------~~v~~wd~~~~~~~~~~~~~ 381 (408)
.-|.+-|+++ |..+..++-
T Consensus 265 ~~~f~glpl~~~l~~~~CGv~vidl~t-G~vv~~l~f 300 (335)
T TIGR03032 265 SRVFGGLPIEERLDALGCGVAVIDLNS-GDVVHWLRF 300 (335)
T ss_pred CCCcCCCchhhhhhhhcccEEEEECCC-CCEEEEEEe
Confidence 2366778887 677666654
No 470
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=67.60 E-value=34 Score=33.73 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=50.6
Q ss_pred CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeC
Q 015363 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (408)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~ 360 (408)
...+|.+.++..| ++.++.+|.|.++...+.... ..+..| ..|...|+++..+.+|-+++-++
T Consensus 625 g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~----~~leah---------qee~~~Vthm~~~~~gVwvafas 687 (925)
T KOG3522|consen 625 GSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRS----WDLEAH---------QEEAHSVTHMLYLDNGVWVAFAS 687 (925)
T ss_pred CCccccchhhhhc----eeeeecCCceEEEechhcccc----chhHHH---------HhhcceEEEEEeeCCceEEEEcC
Confidence 3566788888655 344667999999998776433 344444 33346899999998888887775
Q ss_pred CCeEEEEECCC
Q 015363 361 YMTLKLWDINM 371 (408)
Q Consensus 361 d~~v~~wd~~~ 371 (408)
...+++++..+
T Consensus 688 G~~~rlfhtet 698 (925)
T KOG3522|consen 688 GDEERLFHTET 698 (925)
T ss_pred CCEEEEecccc
Confidence 44677766554
No 471
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.69 E-value=16 Score=18.83 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=20.0
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEE
Q 015363 128 LYLLSTNDKTIKLWKVQEKKVKKV 151 (408)
Q Consensus 128 ~l~~~~~d~~i~vwd~~~~~~~~~ 151 (408)
.+++++.++.+..+|.++++....
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888999999999998876653
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=65.56 E-value=73 Score=25.94 Aligned_cols=160 Identities=9% Similarity=0.109 Sum_probs=79.0
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEeccCCCCcccCCCCCeEeecCCceeeEEccCCCeeecccccccCccccCCCCCcee
Q 015363 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (408)
Q Consensus 128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (408)
.|+.+.....|.+|++.+..+.....+.. -+.+. .+.++..|.++.++..-.... ....+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-------v~~V~-------~l~y~~~GDYlvTlE~k~~~~------~~~fv 89 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-------VGRVL-------QLVYSEAGDYLVTLEEKNKRS------PVDFV 89 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-------hhhee-------EEEeccccceEEEEEeecCCc------cceEE
Confidence 55555777889999998554444333322 22344 688888899887664433222 01133
Q ss_pred eeceeeecccc---------------c-----cccccceeeccccccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCc-
Q 015363 208 RLPVVVTSQET---------------N-----LVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ- 266 (408)
Q Consensus 208 ~~~~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~- 266 (408)
++|- =|+... . ........+--.-...+.+++..|-..-|+.|.++.+.+|.+.....
T Consensus 90 R~Y~-NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~ 168 (215)
T PF14761_consen 90 RAYF-NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQ 168 (215)
T ss_pred EEEE-EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEe
Confidence 3332 121110 0 00000111101123456788888876667777778899998763221
Q ss_pred --eeeEeecCCCcccCCcCC-eEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 267 --SFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 267 --~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
.+.++++...-+.-|.+. ...+++. + .++|..+ +-.+++..+
T Consensus 169 ~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~-~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 169 SEKFSFLDFERSLIDHIDNFKPTQVAIC--E-GYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cccccEEechhhhhheecCceEEEEEEE--e-eEEEEec-CCEEEEEEE
Confidence 122333221111212222 3455554 3 4566544 556666544
No 473
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=65.17 E-value=1.5e+02 Score=29.48 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=24.1
Q ss_pred ccceEEEEECCCCCeEEEeecCCeEEEEEe
Q 015363 35 VDIISAIEFDKSGDHLATGDRGGRVVLFER 64 (408)
Q Consensus 35 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~ 64 (408)
.+.|-+.+||.|.+.++....+..|.+++-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 567889999999987777777778888873
No 474
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=64.20 E-value=17 Score=18.24 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=16.8
Q ss_pred eEEEEEcCCCCceEEEEeCCCeEEEE
Q 015363 285 ITSAEFHPTHCNMLAYSSSKGSIRLI 310 (408)
Q Consensus 285 v~~~~~~p~~~~~l~s~~~dg~i~iw 310 (408)
...++++++| +++++=+...+|.++
T Consensus 4 P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 3567777777 777666666666654
No 475
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=63.69 E-value=1.2e+02 Score=27.85 Aligned_cols=111 Identities=8% Similarity=0.066 Sum_probs=59.6
Q ss_pred cccCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCC-----CCCEEEEecCCeEEEEeCCCCCce----
Q 015363 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-----DGETFISADDLRINLWNLEISNQS---- 267 (408)
Q Consensus 197 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~d~~i~iwd~~~~~~~---- 267 (408)
.++.|+..|.+++|+ ....+......... ..-..+|..+..-+ +...||.-.-..+.+|.+......
T Consensus 39 ~IivGS~~G~LrIy~-P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 39 KIIVGSYSGILRIYD-PSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred EEEEeccccEEEEEc-cCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 358899999999998 43222111111111 12235666665432 223444447788888888422111
Q ss_pred --eeEeecCCCcccCC--cCCeEEEEEcCCC----CceEEEEeCCCeEEEEEcCCCc
Q 015363 268 --FNIVDVKPANMEDL--TEVITSAEFHPTH----CNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 268 --~~~~~~~~~~~~~~--~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
..+.. +-.| .....++.+-|-| ..++..=+-||.+.+|+-+...
T Consensus 115 ~~~~L~~-----~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 115 NQYQLEL-----IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred cEEEEEE-----EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 11110 1112 1223455554443 3678888999999999987653
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=62.92 E-value=1.2e+02 Score=27.64 Aligned_cols=123 Identities=10% Similarity=0.085 Sum_probs=68.4
Q ss_pred eEEEEeCCCCCEEEEecCCeEEE-EeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCC
Q 015363 236 INSISNNSDGETFISADDLRINL-WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (408)
Q Consensus 236 v~~i~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 314 (408)
...+..++++.+++.+..|.+.. ||-. ....+.++ ......+..+.+.+++ .+++++ .+|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~~------~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPHN------RASARRIQNMGWRADG-GLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEec------CCCccceeeeeEcCCC-CEEEEe-CCceEEE-ecCC
Confidence 45567788888888886565432 3332 21112211 1224557899999998 766655 5666543 3333
Q ss_pred CceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeee
Q 015363 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~ 380 (408)
+..- . ...+..... ..-...+.++.|.+++..+++|..|.+....- .|+..+..+
T Consensus 310 G~~~-~-~~~f~~~~~-------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~ 364 (398)
T PLN00033 310 GLTE-E-DFDFEEADI-------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDK 364 (398)
T ss_pred CCcc-c-ccceeeccc-------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEcc
Confidence 3210 0 001111100 00013588999999999999998887766643 356655544
No 477
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=62.61 E-value=32 Score=23.31 Aligned_cols=29 Identities=3% Similarity=0.125 Sum_probs=23.6
Q ss_pred eeEEEEEccCCCEEEEeC--CCeEEEEECCC
Q 015363 343 SISDIKFARNGRHILSRD--YMTLKLWDINM 371 (408)
Q Consensus 343 ~i~~~~~spdg~~l~s~~--d~~v~~wd~~~ 371 (408)
.-+.+.++|++++|..++ .+.|.+|+...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 457789999999998874 48999998753
No 478
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.14 E-value=1.6e+02 Score=28.25 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=24.1
Q ss_pred CCCEEEEeC-CCeEEEEECCCCCCceeeeeeccc
Q 015363 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH 384 (408)
Q Consensus 352 dg~~l~s~~-d~~v~~wd~~~~~~~~~~~~~~~~ 384 (408)
.+.+++.++ +|.++.+|.++ |+.+-.++-...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~T-Ge~lw~~~~g~~ 503 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKT-GEELWKFKTGSG 503 (527)
T ss_pred CCcEEEEECCCCeEEEEECCC-CCEeEEEeCCCC
Confidence 445666675 79999999999 788887766543
No 479
>PRK13684 Ycf48-like protein; Provisional
Probab=61.04 E-value=1.2e+02 Score=26.90 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=71.9
Q ss_pred ccceEEEEeCCCCCEEEEecCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEc
Q 015363 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (408)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 312 (408)
...+..+.+.|++.+++++..|.+..- .+........+ ...-...++.+.+.|++ .+++++ ..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccC
Confidence 356888999999988888877765432 12233333322 12234568899999998 766665 5676653233
Q ss_pred CCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEEeCCCeEEEEECCCCCCceeeee
Q 015363 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380 (408)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s~~d~~v~~wd~~~~~~~~~~~~ 380 (408)
..+.. +.....+. ..-...+.++.+.|++..++++.+|.|. ...+ .++..+..+
T Consensus 243 d~G~s-------W~~~~~~~-----~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d-~G~tW~~~~ 296 (334)
T PRK13684 243 DDLES-------WSKPIIPE-----ITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKD-GGKTWEKDP 296 (334)
T ss_pred CCCCc-------cccccCCc-----cccccceeeEEEcCCCCEEEEcCCCeEE-EeCC-CCCCCeECC
Confidence 33321 11110000 0001357889999998888888877665 3444 355555544
No 480
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=60.67 E-value=1.9e+02 Score=29.16 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCC-Cc------cccccccceeEEEEEccCCCE
Q 015363 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG-TR------SFFTEIIASISDIKFARNGRH 355 (408)
Q Consensus 283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~h~~~i~~~~~spdg~~ 355 (408)
..|.++.....+ .+++..-.||+|.++|-.+.+.+... . .....+. .. ..| .+...+..++|||.+.-
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~--~-~~~~~~~~v~s~~~~Gf~f-p~~~~~~~vafSPt~c~ 334 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNET--R-TNGEPPNTVTSLFQAGFHF-PCIQPPLHVAFSPTMCS 334 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhccc--c-cccCCcccccccccccccc-ccCCCCceEEECcccce
Confidence 456677777777 78899999999999999888654211 0 0001100 00 011 11124566899999988
Q ss_pred EEEeC-CCeEE
Q 015363 356 ILSRD-YMTLK 365 (408)
Q Consensus 356 l~s~~-d~~v~ 365 (408)
++.-+ ++.+.
T Consensus 335 ~v~~~~~~~~~ 345 (753)
T PF11635_consen 335 LVQIDEDGKTK 345 (753)
T ss_pred EEEEecCCCce
Confidence 88764 56655
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=59.91 E-value=53 Score=32.37 Aligned_cols=46 Identities=2% Similarity=-0.054 Sum_probs=27.5
Q ss_pred CCCEEEEe-CCCeEEEEECCCCCCceeeeeecccccceEEecCCCeeee
Q 015363 352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKVMHSSKNYFMG 399 (408)
Q Consensus 352 dg~~l~s~-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (408)
+..++.-+ .+|.|+-+|+. ++....+......+.-...+..+.+++
T Consensus 517 c~~~l~y~t~~G~v~~yn~e--~kl~e~~kfp~~v~df~v~pVH~t~v~ 563 (1243)
T COG5290 517 CQTLLRYGTCVGVVKHYNFE--EKLYELLKFPNGVIDFSVDPVHSTLVA 563 (1243)
T ss_pred HHHHHhhcccceeEEEecch--hhhHHHhhCCCceeEEEeeccccceee
Confidence 44566666 57999999995 455555544444444444455555443
No 482
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=58.48 E-value=78 Score=26.69 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=44.3
Q ss_pred cCCeEEEEE------cCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEc-cCCC
Q 015363 282 TEVITSAEF------HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA-RNGR 354 (408)
Q Consensus 282 ~~~v~~~~~------~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-pdg~ 354 (408)
...|+||+- .++....|+.|+++|.|.|.|-...... ..+.-...| ..-...-.|. -|.+
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il----~~~~lpsvP---------v~i~~~G~~devdyR 242 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTIL----KQVQLPSVP---------VFISVSGQYDEVDYR 242 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeE----EEEecCCCc---------eEEEEEeeeeccceE
Confidence 445666653 2334468999999999999998876543 222222110 0111223454 5777
Q ss_pred EEEEeCCCeEEEE
Q 015363 355 HILSRDYMTLKLW 367 (408)
Q Consensus 355 ~l~s~~d~~v~~w 367 (408)
.++++.||.|++-
T Consensus 243 I~Va~Rdg~iy~i 255 (257)
T PF14779_consen 243 IVVACRDGKIYTI 255 (257)
T ss_pred EEEEeCCCEEEEE
Confidence 7888888888764
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.12 E-value=2.6e+02 Score=29.76 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=51.8
Q ss_pred CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcC----CC---ceeccc-c-cccccccCCCCccccccccceeEEEEEcc
Q 015363 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR----QS---ALCDTH-S-KLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (408)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~---~~~~~~-~-~~~~~~~~~~~~~~~~~h~~~i~~~~~sp 351 (408)
....|.++....+| ++|.+|- || .+|.+- .+ +.|.+. + +..-..-.|....++..+..+|..+....
T Consensus 177 dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 177 DGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 35568899988888 8877765 55 455432 11 111000 0 00000001222223345667999999987
Q ss_pred CCCEEEEeCC-CeEEEEECCCCC
Q 015363 352 NGRHILSRDY-MTLKLWDINMDS 373 (408)
Q Consensus 352 dg~~l~s~~d-~~v~~wd~~~~~ 373 (408)
.-..|.+-+. ++|.+||+...|
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ccceeeeeccCceEEEEEccCCC
Confidence 7777777765 999999998643
No 484
>PHA03098 kelch-like protein; Provisional
Probab=56.67 E-value=1.9e+02 Score=27.71 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=16.7
Q ss_pred CcEEEEEeCCC------eEEEEEcCCCcEEEE
Q 015363 126 SALYLLSTNDK------TIKLWKVQEKKVKKV 151 (408)
Q Consensus 126 ~~~l~~~~~d~------~i~vwd~~~~~~~~~ 151 (408)
+..++.|+.++ .+..||..+.+....
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 326 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKV 326 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeEC
Confidence 45677776442 567788887776543
No 485
>PRK10115 protease 2; Provisional
Probab=56.24 E-value=2.2e+02 Score=28.40 Aligned_cols=33 Identities=3% Similarity=-0.036 Sum_probs=23.6
Q ss_pred cceEEEEECCCCCeEEEeecC-----CeEEEEEeCCCC
Q 015363 36 DIISAIEFDKSGDHLATGDRG-----GRVVLFERTDTR 68 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~d-----g~i~iw~~~~~~ 68 (408)
-.+..+.++|||++||.+... ..|++-|+.++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 347778999999988876432 367778877654
No 486
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=55.85 E-value=45 Score=20.31 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=25.1
Q ss_pred eEEEEEccCCCEEEEeC------CCeEEEEECCCCCCceeee
Q 015363 344 ISDIKFARNGRHILSRD------YMTLKLWDINMDSGPVATF 379 (408)
Q Consensus 344 i~~~~~spdg~~l~s~~------d~~v~~wd~~~~~~~~~~~ 379 (408)
+.+++.-|||+.|++|. +....++.++.+|.+=.+|
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttF 44 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTF 44 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCc
Confidence 57788999999999983 2356677777655544443
No 487
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=55.77 E-value=59 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=24.1
Q ss_pred cceEEEEeCCCCCEEEEe--cCCeEEEEeCC
Q 015363 234 YHINSISNNSDGETFISA--DDLRINLWNLE 262 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~iwd~~ 262 (408)
...+.|.++|++++|..+ ..+.|++|...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 446789999999988877 68999999875
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=54.81 E-value=1.4e+02 Score=25.78 Aligned_cols=61 Identities=11% Similarity=0.300 Sum_probs=37.3
Q ss_pred ceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCc--eeeEeecCCCcccCC-cCCeEEEEEcC--CCCceEEEE
Q 015363 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQ--SFNIVDVKPANMEDL-TEVITSAEFHP--THCNMLAYS 301 (408)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~-~~~v~~~~~~p--~~~~~l~s~ 301 (408)
....++++++|.++++- ..+.|..|+....-. ...++- .... -.++..+.+.+ +| .+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~-----~d~~~l~~pd~~~i~~~~~g-~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA-----QDPRTLQWPDGLKIDPEGDG-YLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE-----E-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE-----EcCceeeccceeeeccccCc-eEEEEE
Confidence 45577888999888887 899999999984221 122211 1111 35677888888 66 444443
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.48 E-value=35 Score=33.25 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=41.5
Q ss_pred cceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCcccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEE
Q 015363 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (408)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 311 (408)
..++++.-+|.+..++.+ .||.|.+|+.-...+ .++ -....+-..+.|...| |++...|.++.-|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q-ski--------~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ-SKI--------CEEAKPKENLVFTNHG---LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch-hhh--------hhhcCCccceeeeccc---eEEEeccchhheee
Confidence 457788889999999999 999999999873322 111 1112223445665555 45555566555553
No 490
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=54.23 E-value=35 Score=18.58 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=23.4
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEeccCC
Q 015363 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNV 156 (408)
Q Consensus 128 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 156 (408)
.+.+++.||.|.-.|.++|+.+.......
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45666999999999999999887766543
No 491
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=50.82 E-value=2.3e+02 Score=27.11 Aligned_cols=68 Identities=7% Similarity=0.117 Sum_probs=36.3
Q ss_pred EEEEe-cCCeEEEEeCCCCCceeeEeecCC-CcccC---CcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCcee
Q 015363 247 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMED---LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (408)
Q Consensus 247 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~---~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 318 (408)
.++.+ .++.|.-+|..+++...+. +... ..... ....-..+++. + ..++.++.|+.|.-.|.++++.+
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~-~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKY-DPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEe-cCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCEE
Confidence 44444 6777888888865554442 1100 00000 00000112332 2 35666778999999999999876
No 492
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.64 E-value=3.2e+02 Score=28.68 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=27.3
Q ss_pred cceEEEEECCCCCeEEEeecCCeEEEEEeCCC
Q 015363 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (408)
Q Consensus 36 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~ 67 (408)
.....++|+|.-.++|.|+..|.|+++-...-
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccce
Confidence 45678899999999999999999999986543
No 493
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=50.55 E-value=1.3e+02 Score=23.97 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEEE-e------CC-CeEEEEECCCCCCce
Q 015363 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-R------DY-MTLKLWDINMDSGPV 376 (408)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~s-~------~d-~~v~~wd~~~~~~~~ 376 (408)
|.|+|.|..++....-.+...... .....+-|-.|..+++. | ++ |.|+++++.+ ++..
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k-------------~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~t-g~~~ 153 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEK-------------YSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNT-GNLT 153 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccc-------------cCCceeEEecCCcEEEEEccccceEccCCeEEEEEccC-Ccee
Confidence 578888888775421001111111 22346778777666553 2 45 8899999998 6666
Q ss_pred eeeeecccccceEEecCCCeeeee
Q 015363 377 ATFQVHEHLRPKVMHSSKNYFMGL 400 (408)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~ 400 (408)
..+..+..-...+..-+.++.+-+
T Consensus 154 ~ly~~~dkkqQVis~e~~gd~L~L 177 (200)
T PF15525_consen 154 ELYEWKDKKQQVISAEKNGDNLNL 177 (200)
T ss_pred EeeeccccceeEEEEEEeCCEEEE
Confidence 666655554555555555555433
No 494
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=50.51 E-value=1.7e+02 Score=25.35 Aligned_cols=142 Identities=10% Similarity=0.043 Sum_probs=78.7
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe-cCCeEEEEeCCCCCceeeEeecCCCc
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (408)
+.+..+.-+++.| +...+....... +. -.+.-.++.. .|++...+ -|.-..+.|+.+...+...- +
T Consensus 100 yvad~ssGL~IvD-IS~P~sP~~~~~----ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lag-----r 166 (370)
T COG5276 100 YVADWSSGLRIVD-ISTPDSPTLIGF----LN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAG-----R 166 (370)
T ss_pred EEEcCCCceEEEe-ccCCCCcceecc----cc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeee-----e
Confidence 5566777788888 554332111110 11 1122334444 57888777 46667788998665543221 1
Q ss_pred ccCCcCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCceecccccccccccCCCCccccccccceeEEEEEccCCCEEE
Q 015363 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (408)
Q Consensus 278 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~spdg~~l~ 357 (408)
.......-..++.+ | ++...+..|+-+.+-|+..... -.|.++-.. ...+..+..+++-.+++
T Consensus 167 ya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~s-----Pvli~~~n~---------g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 167 YALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHS-----PVLIGSYNT---------GPGTYSVSVSDNRAYLV 229 (370)
T ss_pred eccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCC-----CeEEEEEec---------CCceEEEEecCCeeEEE
Confidence 22223333556665 5 5566666888899999987643 344444221 12577788887766666
Q ss_pred EeCCCeEEEEECCC
Q 015363 358 SRDYMTLKLWDINM 371 (408)
Q Consensus 358 s~~d~~v~~wd~~~ 371 (408)
..+. .+.+-|.+.
T Consensus 230 vy~e-gvlivd~s~ 242 (370)
T COG5276 230 VYDE-GVLIVDVSG 242 (370)
T ss_pred Eccc-ceEEEecCC
Confidence 5544 344555554
No 495
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=49.78 E-value=29 Score=19.08 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=15.3
Q ss_pred CcEEEEEeCCCeEEEEEcCC
Q 015363 126 SALYLLSTNDKTIKLWKVQE 145 (408)
Q Consensus 126 ~~~l~~~~~d~~i~vwd~~~ 145 (408)
+..++.++.||.+..+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 44888999999999998764
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.38 E-value=62 Score=31.67 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.9
Q ss_pred cCCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCCc
Q 015363 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (408)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 316 (408)
...++++.-+|.+ +-++.++.||.|++|+.....
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccc
Confidence 4557889999999 899999999999999986653
No 497
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.55 E-value=1.5e+02 Score=24.11 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=16.4
Q ss_pred CcCCeEEEEEcCCCCceEEEEe
Q 015363 281 LTEVITSAEFHPTHCNMLAYSS 302 (408)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~s~~ 302 (408)
+....+.+++.|++.+++++|-
T Consensus 227 ~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 227 NDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccccccceeecCcCCeEEEecC
Confidence 4556778999999867777763
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=47.06 E-value=2.3e+02 Score=26.05 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCeEEEEEcCCC
Q 015363 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (408)
Q Consensus 283 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 315 (408)
..|.+++..+.. +++++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeCC
Confidence 348899999998 89999999999999999753
No 499
>PHA02790 Kelch-like protein; Provisional
Probab=44.58 E-value=2.8e+02 Score=26.19 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=17.8
Q ss_pred CcEEEEEeCCC---eEEEEEcCCCcEEEE
Q 015363 126 SALYLLSTNDK---TIKLWKVQEKKVKKV 151 (408)
Q Consensus 126 ~~~l~~~~~d~---~i~vwd~~~~~~~~~ 151 (408)
|...+.|+.++ .+..||..+.+....
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 66777777553 467788887776553
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=43.84 E-value=71 Score=21.82 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=23.9
Q ss_pred cCCCCCceeeeceeeeccccccccccceeeccccccceEEEEeCCCCCEEEEe
Q 015363 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (408)
Q Consensus 199 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (408)
+.+..+|.+..|| .... ....+ ...-...+.|++++|+..++.+
T Consensus 31 le~~~~GRll~yd-p~t~-------~~~vl-~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 31 LEGRPTGRLLRYD-PSTK-------ETTVL-LDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHT---EEEEEEE-TTTT-------EEEEE-EEEESSEEEEEE-TTSSEEEEE
T ss_pred ecCCCCcCEEEEE-CCCC-------eEEEe-hhCCCccCeEEEcCCCCEEEEE
Confidence 4566677777777 2221 11111 1112457899999999988887
Done!